Query 044502
Match_columns 262
No_of_seqs 124 out of 437
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 4.3E-95 9E-100 620.6 18.1 238 4-241 1-238 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 2.8E-91 6.1E-96 625.0 25.3 235 8-242 1-237 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 8.9E-87 1.9E-91 594.9 23.3 235 8-242 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 8.7E-83 1.9E-87 559.1 21.3 240 7-246 1-241 (247)
5 PF13424 TPR_12: Tetratricopep 96.4 0.0041 9E-08 45.0 3.5 54 150-205 22-75 (78)
6 KOG1840 Kinesin light chain [C 93.1 11 0.00023 37.9 18.6 186 10-210 201-401 (508)
7 TIGR00990 3a0801s09 mitochondr 92.6 3.1 6.8E-05 41.8 14.0 53 150-204 484-536 (615)
8 KOG1840 Kinesin light chain [C 92.1 14 0.00031 37.0 19.1 184 10-216 285-490 (508)
9 PF12862 Apc5: Anaphase-promot 89.2 2.3 4.9E-05 32.3 7.3 72 132-209 2-74 (94)
10 PF13414 TPR_11: TPR repeat; P 80.6 6.2 0.00013 27.2 5.7 46 150-204 20-66 (69)
11 PF07719 TPR_2: Tetratricopept 78.8 5.4 0.00012 23.5 4.2 30 11-40 4-33 (34)
12 PF13374 TPR_10: Tetratricopep 77.7 2.3 5E-05 26.1 2.4 23 150-172 19-41 (42)
13 PF13174 TPR_6: Tetratricopept 76.8 5.8 0.00013 23.1 3.9 31 10-40 2-32 (33)
14 PF04781 DUF627: Protein of un 76.6 6.3 0.00014 31.6 5.1 58 105-163 16-74 (111)
15 TIGR02917 PEP_TPR_lipo putativ 71.3 1.2E+02 0.0025 30.4 14.9 31 10-40 467-497 (899)
16 PF13181 TPR_8: Tetratricopept 70.6 8.1 0.00018 22.8 3.5 29 11-39 4-32 (34)
17 PF12569 NARP1: NMDA receptor- 69.2 1.3E+02 0.0029 30.2 17.9 62 143-205 156-223 (517)
18 PF00515 TPR_1: Tetratricopept 69.1 13 0.00028 22.0 4.2 30 11-40 4-33 (34)
19 PF13428 TPR_14: Tetratricopep 67.8 12 0.00027 23.9 4.2 30 11-40 4-33 (44)
20 TIGR00990 3a0801s09 mitochondr 63.5 1.7E+02 0.0036 29.4 17.2 73 150-231 525-597 (615)
21 PF05010 TACC: Transforming ac 62.5 21 0.00045 31.7 5.8 84 13-109 123-206 (207)
22 PF13431 TPR_17: Tetratricopep 61.7 8.3 0.00018 23.8 2.3 34 155-197 1-34 (34)
23 TIGR02917 PEP_TPR_lipo putativ 60.2 1.9E+02 0.0041 28.9 16.5 57 10-69 705-761 (899)
24 PF13424 TPR_12: Tetratricopep 59.4 36 0.00079 23.8 5.8 38 171-210 1-38 (78)
25 COG0233 Frr Ribosome recycling 56.1 44 0.00096 29.2 6.6 73 39-112 105-177 (187)
26 CHL00033 ycf3 photosystem I as 55.7 85 0.0018 25.6 8.2 69 150-227 89-163 (168)
27 PRK15363 pathogenicity island 53.2 70 0.0015 27.1 7.2 72 146-230 82-155 (157)
28 smart00028 TPR Tetratricopepti 52.7 33 0.00072 17.9 3.9 29 11-39 4-32 (34)
29 PF01765 RRF: Ribosome recycli 52.6 51 0.0011 27.7 6.4 73 39-112 85-157 (165)
30 PRK10049 pgaA outer membrane p 52.6 2.9E+02 0.0064 28.8 14.9 59 10-71 85-143 (765)
31 PF13371 TPR_9: Tetratricopept 52.1 58 0.0012 22.3 5.7 61 150-228 12-72 (73)
32 PF13414 TPR_11: TPR repeat; P 50.4 77 0.0017 21.4 7.4 44 10-54 5-48 (69)
33 PF13176 TPR_7: Tetratricopept 50.1 34 0.00073 20.9 3.8 26 11-36 2-27 (36)
34 PF14559 TPR_19: Tetratricopep 50.0 62 0.0013 21.8 5.5 44 150-202 8-51 (68)
35 PRK10049 pgaA outer membrane p 49.2 3.3E+02 0.0072 28.4 14.5 58 11-70 119-176 (765)
36 COG3947 Response regulator con 48.2 29 0.00062 32.8 4.4 45 188-237 291-335 (361)
37 PF13432 TPR_16: Tetratricopep 47.9 83 0.0018 21.1 6.4 53 13-67 2-54 (65)
38 KOG4759 Ribosome recycling fac 47.7 91 0.002 28.7 7.5 71 39-112 183-253 (263)
39 PRK12794 flaF flagellar biosyn 47.4 25 0.00055 28.5 3.6 58 181-238 3-61 (122)
40 PRK12793 flaF flagellar biosyn 47.4 24 0.00051 28.4 3.3 53 185-238 6-59 (115)
41 KOG4162 Predicted calmodulin-b 46.6 1.3E+02 0.0029 31.7 9.3 96 95-205 411-507 (799)
42 TIGR00496 frr ribosome recycli 46.5 66 0.0014 27.7 6.2 73 39-112 94-166 (176)
43 PF13432 TPR_16: Tetratricopep 46.1 54 0.0012 22.0 4.7 34 7-40 30-63 (65)
44 PF10516 SHNi-TPR: SHNi-TPR; 44.1 28 0.0006 22.4 2.7 38 130-170 1-38 (38)
45 TIGR02521 type_IV_pilW type IV 43.7 1.7E+02 0.0037 23.5 16.7 56 10-67 33-88 (234)
46 PF08424 NRDE-2: NRDE-2, neces 43.7 1.2E+02 0.0027 28.1 8.0 85 149-240 118-212 (321)
47 cd00520 RRF Ribosome recycling 43.4 70 0.0015 27.5 5.9 73 39-112 99-171 (179)
48 PRK00083 frr ribosome recyclin 43.0 81 0.0017 27.3 6.2 73 39-112 103-175 (185)
49 PRK11788 tetratricopeptide rep 42.0 2.7E+02 0.0059 25.4 14.7 24 13-36 112-135 (389)
50 PRK15179 Vi polysaccharide bio 41.9 4.3E+02 0.0093 27.6 13.2 129 9-164 87-219 (694)
51 CHL00033 ycf3 photosystem I as 41.7 78 0.0017 25.8 5.8 68 121-204 33-100 (168)
52 PRK14720 transcript cleavage f 40.7 59 0.0013 35.0 5.9 75 120-207 100-180 (906)
53 COG4499 Predicted membrane pro 38.5 50 0.0011 32.2 4.5 47 175-221 231-282 (434)
54 PRK09782 bacteriophage N4 rece 36.9 6E+02 0.013 27.8 14.2 23 13-35 514-536 (987)
55 PF10083 DUF2321: Uncharacteri 35.7 2.4E+02 0.0053 24.0 7.7 33 26-58 83-115 (158)
56 PRK02603 photosystem I assembl 34.1 1.3E+02 0.0028 24.7 6.0 50 150-205 52-101 (172)
57 PF12895 Apc3: Anaphase-promot 33.7 50 0.0011 23.7 3.1 43 156-201 41-83 (84)
58 PF13429 TPR_15: Tetratricopep 33.5 1.1E+02 0.0023 27.2 5.8 162 13-206 49-210 (280)
59 PF14559 TPR_19: Tetratricopep 32.6 1.5E+02 0.0033 19.7 6.0 52 20-73 3-54 (68)
60 PF06552 TOM20_plant: Plant sp 32.1 1.5E+02 0.0033 25.9 6.1 84 130-223 32-121 (186)
61 cd02656 MIT MIT: domain contai 32.0 1.9E+02 0.0041 20.6 6.6 27 10-36 8-34 (75)
62 cd02682 MIT_AAA_Arch MIT: doma 31.9 2.1E+02 0.0046 21.2 6.5 27 10-36 8-34 (75)
63 PF12688 TPR_5: Tetratrico pep 31.7 1.7E+02 0.0038 23.3 6.1 50 150-205 18-67 (120)
64 PF13371 TPR_9: Tetratricopept 31.4 92 0.002 21.3 4.0 29 11-39 32-60 (73)
65 KOG1156 N-terminal acetyltrans 30.0 3.8E+02 0.0083 28.0 9.4 165 41-237 3-198 (700)
66 TIGR03302 OM_YfiO outer membra 29.7 3.5E+02 0.0075 22.9 17.0 62 9-71 34-97 (235)
67 PRK11447 cellulose synthase su 29.4 7.9E+02 0.017 27.0 15.5 55 13-69 356-410 (1157)
68 PRK15359 type III secretion sy 29.2 2.3E+02 0.0051 22.7 6.6 47 149-204 74-120 (144)
69 PLN03088 SGT1, suppressor of 28.0 1.5E+02 0.0033 27.8 6.0 46 154-203 50-97 (356)
70 PRK02603 photosystem I assembl 27.8 3.4E+02 0.0073 22.2 7.7 68 150-226 89-162 (172)
71 COG3063 PilF Tfp pilus assembl 26.8 89 0.0019 28.5 3.9 46 149-203 85-130 (250)
72 PF08899 DUF1844: Domain of un 26.6 1.2E+02 0.0026 22.5 4.0 29 24-54 40-68 (74)
73 PRK11447 cellulose synthase su 26.6 8.9E+02 0.019 26.6 16.2 32 10-41 114-145 (1157)
74 cd05804 StaR_like StaR_like; a 25.9 4.9E+02 0.011 23.4 11.2 163 6-202 41-212 (355)
75 KOG1126 DNA-binding cell divis 25.8 86 0.0019 32.4 4.0 68 127-203 483-550 (638)
76 KOG0547 Translocase of outer m 25.6 87 0.0019 31.7 3.9 40 150-204 132-177 (606)
77 KOG0687 26S proteasome regulat 24.3 3.3E+02 0.0072 26.3 7.3 78 129-209 53-137 (393)
78 PF02259 FAT: FAT domain; Int 24.3 5.2E+02 0.011 23.1 11.5 30 9-38 147-176 (352)
79 PF05008 V-SNARE: Vesicle tran 23.2 2.9E+02 0.0062 19.8 6.6 67 26-93 3-70 (79)
80 TIGR02795 tol_pal_ybgF tol-pal 22.7 3E+02 0.0066 19.9 7.5 43 11-53 5-49 (119)
81 PF08631 SPO22: Meiosis protei 22.5 5.6E+02 0.012 23.0 8.5 88 150-238 10-100 (278)
82 PRK15331 chaperone protein Sic 22.0 5.1E+02 0.011 22.2 8.2 69 149-232 87-155 (165)
83 PLN03088 SGT1, suppressor of 21.9 6.7E+02 0.014 23.5 10.5 59 9-69 37-95 (356)
84 PRK15326 type III secretion sy 21.8 1.5E+02 0.0032 22.4 3.7 36 149-186 20-59 (80)
85 KOG3785 Uncharacterized conser 21.7 1.9E+02 0.004 28.4 5.2 38 149-187 160-197 (557)
86 PF07309 FlaF: Flagellar prote 21.6 94 0.002 24.7 2.8 49 189-238 10-58 (113)
87 KOG1107 Membrane coat complex 21.5 1.7E+02 0.0038 30.6 5.2 42 149-190 656-698 (760)
88 PRK11189 lipoprotein NlpI; Pro 21.5 2.1E+02 0.0045 26.0 5.4 32 9-40 237-268 (296)
89 PHA02103 hypothetical protein 21.4 35 0.00075 27.4 0.2 14 129-142 78-91 (135)
90 PRK10370 formate-dependent nit 21.0 2.3E+02 0.0049 24.3 5.4 57 9-67 108-167 (198)
91 COG3629 DnrI DNA-binding trans 20.3 6.8E+02 0.015 23.2 8.5 61 10-70 155-216 (280)
92 PF12753 Nro1: Nuclear pore co 20.3 1.3E+02 0.0027 29.5 3.8 127 96-234 74-216 (404)
93 KOG4626 O-linked N-acetylgluco 20.0 53 0.0012 34.2 1.3 46 149-203 268-313 (966)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-95 Score=620.57 Aligned_cols=238 Identities=76% Similarity=1.155 Sum_probs=233.1
Q ss_pred chhhHHhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhH
Q 044502 4 TEKERETHVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNV 83 (262)
Q Consensus 4 ~~~~re~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~ 83 (262)
|+..|++.+|+|+|++||+||++|++-||.++..+.+|+.+|||||||||||+||.||+|||++++++||+++++++.++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 55569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHH
Q 044502 84 KLIKGYRHKVEEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATA 163 (262)
Q Consensus 84 ~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a 163 (262)
.+|++||++|++||..||++|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccCCCC
Q 044502 164 NKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPE 241 (262)
Q Consensus 164 ~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~ 241 (262)
...||||||||||||||||||||||+|++++||.+||+|||+||++||+|+|++|+|||+||||||||||+||++.+.
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~ 238 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEY 238 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997543
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=2.8e-91 Score=624.95 Aligned_cols=235 Identities=76% Similarity=1.117 Sum_probs=227.7
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHH
Q 044502 8 RETHVYMAKLAEQAERYEEMVESMKKVAKL-G-CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKL 85 (262)
Q Consensus 8 re~l~~~Aklaeq~eRy~dm~~~mk~~i~~-~-~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~ 85 (262)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|+++++++..++++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877777778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 044502 86 IKGYRHKVEEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANK 165 (262)
Q Consensus 86 i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 165 (262)
+++||++|++||..+|++||+|||++|||.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+.
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccCCCCC
Q 044502 166 DLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPED 242 (262)
Q Consensus 166 ~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~~ 242 (262)
+|||||||||||+||||||||||+|++++||++|++|||+|++++|+|+|++|+|+|+|||||||||++|+++.+++
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~ 237 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDD 237 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986644
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=8.9e-87 Score=594.87 Aligned_cols=235 Identities=71% Similarity=1.095 Sum_probs=223.5
Q ss_pred HHhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHH
Q 044502 8 RETHVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIK 87 (262)
Q Consensus 8 re~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~ 87 (262)
|++++|||||++|+|||+||+++||++++.+++||.|||||||+||||+|+++|+|||+|++++++++.+|++.+++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccC
Q 044502 88 GYRHKVEEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDL 167 (262)
Q Consensus 88 ~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L 167 (262)
+||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+.+|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccCCCCC
Q 044502 168 PSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPED 242 (262)
Q Consensus 168 ~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~~ 242 (262)
|||||+||||+||||||||||+|++++||+||++|||+|++++++++|++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987665
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-83 Score=559.10 Aligned_cols=240 Identities=79% Similarity=1.141 Sum_probs=233.4
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHH
Q 044502 7 ERETHVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLI 86 (262)
Q Consensus 7 ~re~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i 86 (262)
+|++++++|+|++|++||+||+.+|+.+++.+.+||.+|||||||+|||+||++|++||+|++|+||+++++++.++..|
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC-cchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhc
Q 044502 87 KGYRHKVEEELSKICGDILTIIDKHLIPSSTS-GEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANK 165 (262)
Q Consensus 87 ~~yr~kie~EL~~~C~eii~lId~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~ 165 (262)
..||++|+.||..+|++|+.++|.+|+|.++. .|++|||+|||||||||++||..|++|++++++++++|+.|+++++.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccCCCCCCCC
Q 044502 166 DLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGE 245 (262)
Q Consensus 166 ~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e~~~~~~~ 245 (262)
.|+|||||||||+||||||||||+|.|++||.|||+|||+||.++|++++++|+|||+||||||||||+|+++.++++..
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~~ 240 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEKE 240 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997776554
Q ss_pred c
Q 044502 246 D 246 (262)
Q Consensus 246 ~ 246 (262)
.
T Consensus 241 ~ 241 (247)
T KOG0841|consen 241 A 241 (247)
T ss_pred c
Confidence 4
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.36 E-value=0.0041 Score=44.97 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 205 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 205 (262)
+.|...|++|+++ ...+++.||...-...|.+..++. +|+.++|++..++|++-
T Consensus 22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 6799999999999 457899888888888888888887 69999999999998764
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.07 E-value=11 Score=37.89 Aligned_cols=186 Identities=18% Similarity=0.182 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHc----C--CCCC-HHHHHHHHHHHhhhhhhhHHHHHHHHh-hhhhhhhcc--C
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKL----G--CEMT-VEERNLLSVGYKNVIGARRASWRIMSS-IEQKEESKG--N 79 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~----~--~~Lt-~eERnLLsvayKn~i~~~R~s~R~l~~-ieqk~~~~~--~ 79 (262)
.+.++|.+..+.|+|+..+...++.++. . ..+- ..-.+-|++.|-+. +..+.|..++.. +...+...| +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4456788888889999999999998865 1 1222 22334455555443 445556555532 222222223 3
Q ss_pred hhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHH
Q 044502 80 EHNVKLIKG-----YRHKVEEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLK 154 (262)
Q Consensus 80 ~~~~~~i~~-----yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~ 154 (262)
+.....+.+ |+.-=-.|-...|+.+++|..+.+. +..++-.- .+.++..-.....=.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~--~~~~~v~~-----------~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG--ASHPEVAA-----------QLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc--cChHHHHH-----------HHHHHHHHHHHhcchhHHHH
Confidence 332222221 3333336778899999999988333 33332221 22333222222233478899
Q ss_pred HHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 044502 155 GYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAEL 210 (262)
Q Consensus 155 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 210 (262)
.|+.|+.+....+.+.||.-=|+--|+++.|+- +|..++|.++.++|+...-+-.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcc
Confidence 999999999888999999999999999999886 7999999999999988775533
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.60 E-value=3.1 Score=41.80 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 204 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 204 (262)
+.|...|++|+++.. ...+.++..++ .++.+..+|+-.|+.++|+.+.++|+.
T Consensus 484 ~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 484 DEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 578888888887753 23333332222 345555666667888888887776643
No 8
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=92.10 E-value=14 Score=37.01 Aligned_cols=184 Identities=16% Similarity=0.117 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHH-H--------HhhhhhhhHHHHHHHHhhhhhhhh
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLG----CEMTVEERNLLSV-G--------YKNVIGARRASWRIMSSIEQKEES 76 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~----~~Lt~eERnLLsv-a--------yKn~i~~~R~s~R~l~~ieqk~~~ 76 (262)
-+.-+|.+....|+|++.-.+++.+++.- +....+=-..|+. + |...+.-.+.+.+++. ...+
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g- 360 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG- 360 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-
Confidence 45577888888899999999999888642 2233332222222 1 3444545555555543 1111
Q ss_pred ccChhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHH
Q 044502 77 KGNEHNVKLIKGYRHKV---------EEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKE 147 (262)
Q Consensus 77 ~~~~~~~~~i~~yr~ki---------e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~ 147 (262)
..++ .+..++..+ -+|=..+-..+|.+.....=. .+..--.+++.|-.+|+|-.
T Consensus 361 ~~~~----~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~--~~~~~~~~l~~la~~~~~~k----------- 423 (508)
T KOG1840|consen 361 EDNV----NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGK--KDYGVGKPLNQLAEAYEELK----------- 423 (508)
T ss_pred ccch----HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccC--cChhhhHHHHHHHHHHHHhc-----------
Confidence 1110 111111111 134455666666666554421 23344577778877775422
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcc
Q 044502 148 AAEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEE 216 (262)
Q Consensus 148 ~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee 216 (262)
-...|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=...+++.+.+
T Consensus 424 ~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred ccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 1256889999999999 78999999999999999984 5668999999999999886666666666554
No 9
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=89.20 E-value=2.3 Score=32.30 Aligned_cols=72 Identities=21% Similarity=0.226 Sum_probs=52.3
Q ss_pred hhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhh-hhhHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 044502 132 YYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPSTHPIRLGLA-LNFSVFYYEIMNSPERACHLAKQAFDEAIAE 209 (262)
Q Consensus 132 yyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLa-LN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ 209 (262)
|.+|+--+..++- ..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..
T Consensus 2 ~l~~~~~~~~~dy-----~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 2 YLRYLNALRSGDY-----SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHcCCH-----HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 4456655555543 45788888888888776766654455544 788887776 599999999999888888764
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=80.61 E-value=6.2 Score=27.16 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhC-ChHHHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMN-SPERACHLAKQAFD 204 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~-~~~~A~~iak~afd 204 (262)
+.|...|++|+++. |.| -.+..|.++-|+. +| ++++|+...++|+.
T Consensus 20 ~~A~~~~~~ai~~~-----p~~---~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 20 EEAIEYFEKAIELD-----PNN---AEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHS-----TTH---HHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-----CCC---HHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 57899999999762 334 4477888888776 57 79999998888764
No 11
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.79 E-value=5.4 Score=23.45 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
+..++.+..+.|+|++.++++++++..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999987663
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.66 E-value=2.3 Score=26.14 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCc
Q 044502 150 EQSLKGYEAASATANKDLPSTHP 172 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~p 172 (262)
+.|...|++|+.+.+.-++|.||
T Consensus 19 ~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 19 EEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHH---------
T ss_pred chhhHHHHHHHHHHHHHhccccc
Confidence 57999999999999888899998
No 13
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.81 E-value=5.8 Score=23.06 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999987653
No 14
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.58 E-value=6.3 Score=31.63 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=40.1
Q ss_pred HHHHHhccCCCCCCcchhhHHhhhccchhhhhhhccc-chHHHHHHHHHHHHHHHHHHHH
Q 044502 105 LTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKV-DQERKEAAEQSLKGYEAASATA 163 (262)
Q Consensus 105 i~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~-~~~~~~~~~~A~~aY~~A~~~a 163 (262)
+.||.+.+...- +.++-.|-+...|+.|..+|.... .+-+....-.|.+||.+|..++
T Consensus 16 L~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 16 LEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 444444443222 223334778899999999999865 4667788899999999997654
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=71.30 E-value=1.2e+02 Score=30.44 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
-+..++.+..+.|+|++.+.++.+++..+|.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 3455666777777777777777777665443
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.55 E-value=8.1 Score=22.80 Aligned_cols=29 Identities=31% Similarity=0.364 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGC 39 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~ 39 (262)
+..++++..+.|+|+.++.+++++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56789999999999999999999998755
No 17
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=69.16 E-value=1.3e+02 Score=30.23 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCC------CCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 044502 143 QERKEAAEQSLKGYEAASATANKDLPS------THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 205 (262)
Q Consensus 143 ~~~~~~~~~A~~aY~~A~~~a~~~L~p------t~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 205 (262)
..+..++..-...|...++... .+++ ..|.-+--++.|-.-+|+.+|+.++|++...+|++-
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4556667777777766655442 2332 357777778888888999999999999988877543
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=69.06 E-value=13 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
+..++.+..+.++|++.+.+.+++++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788889999999999999999988774
No 19
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=67.77 E-value=12 Score=23.90 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
...+|+...+.|++++.+..+++++...|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999988775
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=63.51 E-value=1.7e+02 Score=29.41 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLR 229 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLr 229 (262)
+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-..-+-+.--+|.+++.+-..++
T Consensus 525 ~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 525 IEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666654 3555553 22334444444 79999999988887666543222222235666666644444
Q ss_pred hh
Q 044502 230 DN 231 (262)
Q Consensus 230 DN 231 (262)
.+
T Consensus 596 ~~ 597 (615)
T TIGR00990 596 ED 597 (615)
T ss_pred HH
Confidence 44
No 21
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=62.50 E-value=21 Score=31.67 Aligned_cols=84 Identities=24% Similarity=0.311 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHH
Q 044502 13 YMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHK 92 (262)
Q Consensus 13 ~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~k 92 (262)
|+++|..+-.||+-| |.-++..-+..++|..-+-..++.-+...+..+|--.. +-.+ .-..|. -+.+
T Consensus 123 y~~~l~~~eqry~aL----K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~-------~~~S-Le~~Le-QK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQAL----KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEM-------KVQS-LEESLE-QKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHH-HHHHHH-HHHH
Confidence 566677666777544 33333333345566666666666666667776665421 0000 000111 1222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044502 93 VEEELSKICGDILTIID 109 (262)
Q Consensus 93 ie~EL~~~C~eii~lId 109 (262)
=..||..||+|+|.=++
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 23799999999987553
No 22
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=61.65 E-value=8.3 Score=23.76 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=23.6
Q ss_pred HHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHH
Q 044502 155 GYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACH 197 (262)
Q Consensus 155 aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~ 197 (262)
+|++|+++ .|.|| ....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n~---~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNNA---EAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCCH---HHHHHHHHHHHH-CcCHHhhcC
Confidence 36677644 35554 456788898886 599999863
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=60.16 E-value=1.9e+02 Score=28.91 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSS 69 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ 69 (262)
-...++.+..+.|+|++.+..+++++...|.- .-..-+..+|.. .+....+...+..
T Consensus 705 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~-~g~~~~A~~~~~~ 761 (899)
T TIGR02917 705 GFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLA-SGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 34567788888888888888888888765543 222233333332 2344444444443
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=59.40 E-value=36 Score=23.84 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=30.3
Q ss_pred CcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 044502 171 HPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAEL 210 (262)
Q Consensus 171 ~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~l 210 (262)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 77788888899998886 69999999999999888 5444
No 25
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=56.11 E-value=44 Score=29.21 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044502 39 CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHL 112 (262)
Q Consensus 39 ~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 112 (262)
|+||.|-|.-|.--.|...-..|-|.|-+..=-.. ..+...+-..+-.+-.++.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d-~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAND-KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999988888888887531111 10101111123356667788888888888888888765
No 26
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=55.69 E-value=85 Score=25.61 Aligned_cols=69 Identities=16% Similarity=0.020 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHH------HHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYY------EIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTL 223 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~y------Ei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 223 (262)
+.|..+|++|+.+ .|.+ .+...|.++.++ .-+|+.+.|.....+|+.---. .-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHHH
Confidence 5688899998865 2333 233445555555 2468988888777776533222 22355566666665
Q ss_pred HHHH
Q 044502 224 IMQL 227 (262)
Q Consensus 224 IlqL 227 (262)
.|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 5543
No 27
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=53.20 E-value=70 Score=27.14 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccc--hHhHHH
Q 044502 146 KEAAEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEES--YKDSTL 223 (262)
Q Consensus 146 ~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~--y~ds~~ 223 (262)
..--+.|..+|..|..+. |.||- ...|.++-+.- +|+.+.|. ++|+.||.--...++.. ..-+..
T Consensus 82 ~g~~~~AI~aY~~A~~L~-----~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~ 148 (157)
T PRK15363 82 QKHWGEAIYAYGRAAQIK-----IDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEK 148 (157)
T ss_pred HhhHHHHHHHHHHHHhcC-----CCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHH
Confidence 334567888888887554 44542 14555555553 68887765 58888887665443321 222555
Q ss_pred HHHHHHh
Q 044502 224 IMQLLRD 230 (262)
Q Consensus 224 IlqLLrD 230 (262)
.+..|.|
T Consensus 149 ~L~~l~~ 155 (157)
T PRK15363 149 MLQQLSD 155 (157)
T ss_pred HHHHhhc
Confidence 5555544
No 28
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.74 E-value=33 Score=17.94 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGC 39 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~ 39 (262)
+..++.+..+.++|++.+.++.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34677888889999999999998886654
No 29
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=52.58 E-value=51 Score=27.74 Aligned_cols=73 Identities=22% Similarity=0.193 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044502 39 CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHL 112 (262)
Q Consensus 39 ~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 112 (262)
|.+|.|-|.-|....|......|.++|-+..--.+.- +........-.+-.++++++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999998865222211 000000013345556677777777777777777643
No 30
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=52.57 E-value=2.9e+02 Score=28.77 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIE 71 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ie 71 (262)
-...++.+.-..|++++.+..+++++...|+-.. ...+..++.. .+....+...+....
T Consensus 85 a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~~al 143 (765)
T PRK10049 85 YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3456677777788888888888888877666554 6667766654 366666666665433
No 31
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=52.10 E-value=58 Score=22.32 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLL 228 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLL 228 (262)
+.|.++++.++.+ +|-...+-++++.+++. +|+.++|+....++.... + ...+...++++|
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~--------p-~~~~~~~~~a~l 72 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALELS--------P-DDPDARALRAML 72 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHC--------C-CcHHHHHHHHhc
Confidence 3455555555433 45556667778888887 699999988777666221 1 344556666554
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=50.44 E-value=77 Score=21.44 Aligned_cols=44 Identities=23% Similarity=0.275 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYK 54 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayK 54 (262)
.+..++.+.-+.|+|++++.++++.++.+|.- ..=..-++.+|.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~ 48 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYM 48 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH
Confidence 45678899999999999999999999987763 333344444443
No 33
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=50.12 E-value=34 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAK 36 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~ 36 (262)
+..++.+..+.|+|+.++.+.++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46789999999999999999998553
No 34
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=50.04 E-value=62 Score=21.80 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 202 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~a 202 (262)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..++
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 4677777777644 44445556667777777 59999988876654
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=49.22 E-value=3.3e+02 Score=28.39 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSI 70 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~i 70 (262)
+..++.+....|++++.+..+++++...|. +.+-...+..++.. -+..-.+++.+..+
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~-~~~~e~Al~~l~~~ 176 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN-NRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-CCChHHHHHHHHhC
Confidence 777899999999999999999999998777 44444556666653 23333456555543
No 36
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.17 E-value=29 Score=32.84 Aligned_cols=45 Identities=27% Similarity=0.351 Sum_probs=39.0
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhcc
Q 044502 188 IMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 237 (262)
Q Consensus 188 i~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~ 237 (262)
-.|.+.+|+++.+.++. +|.|+|++++.-+.++-.++||+..=.+
T Consensus 291 e~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 291 EAGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred HcCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 36999999999998764 7899999999999999999999976543
No 37
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=47.90 E-value=83 Score=21.09 Aligned_cols=53 Identities=17% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHH
Q 044502 13 YMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIM 67 (262)
Q Consensus 13 ~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l 67 (262)
.+|...-+.|+|++.+..+++++..+|. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 3678888999999999999999987755 5555556666554 334444443333
No 38
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=47.71 E-value=91 Score=28.71 Aligned_cols=71 Identities=25% Similarity=0.273 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044502 39 CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHL 112 (262)
Q Consensus 39 ~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 112 (262)
|..|.|-|.-|+...+.+...+|.|+|-+..=--+...+... ..-.+-.++++.+|..+.++.++.+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~---~~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKK---SLSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999886422222111111 12245556788888888888888888765
No 39
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=47.43 E-value=25 Score=28.50 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=39.5
Q ss_pred hHHH-HHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccC
Q 044502 181 FSVF-YYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD 238 (262)
Q Consensus 181 ~SVF-~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e 238 (262)
+|.+ |-++......+.++=..+|..+...|....+..-.+....++-|..|..+|+.-
T Consensus 3 ~a~~AY~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~~ 61 (122)
T PRK12794 3 MAAQAYARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSIF 61 (122)
T ss_pred hHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3444 444555556666677778888888777665543233356789999999999963
No 40
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=47.38 E-value=24 Score=28.43 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=42.0
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccC
Q 044502 185 YYEIMNSPE-RACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD 238 (262)
Q Consensus 185 ~yEi~~~~~-~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e 238 (262)
|-+++.+.. .+.++=.++|..++..|....+..- ++...++-|.+|-.+|+--
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~~ 59 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTVL 59 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999988877665544 6778889999999999963
No 41
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=46.60 E-value=1.3e+02 Score=31.72 Aligned_cols=96 Identities=20% Similarity=0.236 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcc-cchHHHHHHHHHHHHHHHHHHHHhccCCCCCcc
Q 044502 95 EELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFK-VDQERKEAAEQSLKGYEAASATANKDLPSTHPI 173 (262)
Q Consensus 95 ~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pi 173 (262)
+|..++...+|++... . ...-+--.+++-|=-|-..|--. ..++|...-.++.++|++|.+ +.|+||
T Consensus 411 eegldYA~kai~~~~~----~--~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp- 478 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGG----Q--RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP- 478 (799)
T ss_pred hhHHHHHHHHHHHhhh----h--hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc-
Confidence 4556666666653311 0 11111223456677777666554 356788888999999999874 568899
Q ss_pred hhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 044502 174 RLGLALNFSVFYYEIMNSPERACHLAKQAFDE 205 (262)
Q Consensus 174 rLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 205 (262)
-...+.|++|-+ .++.+.|.+.++.++.-
T Consensus 479 --~~if~lalq~A~-~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 479 --LVIFYLALQYAE-QRQLTSALDYAREALAL 507 (799)
T ss_pred --hHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 334555665554 58888888887777544
No 42
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=46.47 E-value=66 Score=27.65 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044502 39 CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHL 112 (262)
Q Consensus 39 ~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 112 (262)
|+||.|-|.=|....|...-..|.++|-+..---+. .+........-++-.++++++|..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999888888888888888775311110 0000000011244555667777777777777777654
No 43
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=46.12 E-value=54 Score=22.05 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=27.8
Q ss_pred hHHhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 7 ERETHVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 7 ~re~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
+.+-+..++.+..+.|+|++.+.++.+++...|.
T Consensus 30 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 30 NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3456778899999999999999999999987653
No 44
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=44.06 E-value=28 Score=22.40 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=29.2
Q ss_pred cchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 044502 130 GDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPST 170 (262)
Q Consensus 130 gDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt 170 (262)
+|.|--++|+.-..++. ++|.+=|++|+++-++.+||.
T Consensus 1 Adv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 1 ADVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred CcHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 45666778887766654 578999999999988777773
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=43.70 E-value=1.7e+02 Score=23.52 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHH
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIM 67 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l 67 (262)
-+..++...-..|+|+.++..+++++...|.- ..-...++..|-.. +....+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD-YLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 45667888888899999999999998776543 33444455554332 3333444444
No 46
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.70 E-value=1.2e+02 Score=28.10 Aligned_cols=85 Identities=21% Similarity=0.314 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhcc----------CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccch
Q 044502 149 AEQSLKGYEAASATANKD----------LPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESY 218 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~----------L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y 218 (262)
+......|.+++...... .+.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 345666777776665432 233355788899999999999 599999999999887776643333333222
Q ss_pred HhHHHHHHHHHhhHhhhccCCC
Q 044502 219 KDSTLIMQLLRDNLTLWTSDLP 240 (262)
Q Consensus 219 ~ds~~IlqLLrDNL~lW~~e~~ 240 (262)
. +.++.=-.=|.++.+
T Consensus 197 ~------~~~~~fe~FWeS~vp 212 (321)
T PF08424_consen 197 S------ERLESFEEFWESEVP 212 (321)
T ss_pred H------HHHHHHHHHhCcCCC
Confidence 1 444444578999766
No 47
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=43.44 E-value=70 Score=27.46 Aligned_cols=73 Identities=22% Similarity=0.241 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044502 39 CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHL 112 (262)
Q Consensus 39 ~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 112 (262)
|++|.|-|.=|....|...-..|.++|-+..--.+.- +........-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998888888888888888887753111110 000000001234445666777777777777776544
No 48
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=42.97 E-value=81 Score=27.33 Aligned_cols=73 Identities=19% Similarity=0.210 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044502 39 CEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHL 112 (262)
Q Consensus 39 ~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~L 112 (262)
|+||.|-|.=|....|...-..|.+.|-+..--.+.-.+ .......-++-.++.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999888888888888888875321111000 0000011234455666777777777777776644
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=41.96 E-value=2.7e+02 Score=25.38 Aligned_cols=24 Identities=8% Similarity=-0.006 Sum_probs=11.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Q 044502 13 YMAKLAEQAERYEEMVESMKKVAK 36 (262)
Q Consensus 13 ~~Aklaeq~eRy~dm~~~mk~~i~ 36 (262)
.++.+..+.|+|++...+++++.+
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHc
Confidence 334444444555555555555443
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=41.94 E-value=4.3e+02 Score=27.64 Aligned_cols=129 Identities=13% Similarity=0.001 Sum_probs=71.7
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-hhhhhHHHHHHHHhhhhhhhhccChhhHHHHH
Q 044502 9 ETHVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKN-VIGARRASWRIMSSIEQKEESKGNEHNVKLIK 87 (262)
Q Consensus 9 e~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn-~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~ 87 (262)
+-+.-+|.+..+.|||+|....+..+++..|+...=-.++-.+-.+. -+..-+...+.+-.. .+.... ..
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~-~~ 157 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAR-EI 157 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHH-HH
Confidence 45677899999999999999999999999888754444433333222 222222222222111 111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhh---HHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHh
Q 044502 88 GYRHKVEEELSKICGDILTIIDKHLIPSSTSGEATV---FYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATAN 164 (262)
Q Consensus 88 ~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskv---fy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~ 164 (262)
.-+-+.-.++ .-+++.+.+.++.|-|...+.+..+ .-+|-.|+. +.|..+|++|++...
T Consensus 158 ~~~a~~l~~~-g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~-----------------~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 158 LLEAKSWDEI-GQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL-----------------WRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHh-cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhhC
Confidence 1112222222 4567888888888766554444333 333444543 456777777776653
No 51
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=41.69 E-value=78 Score=25.82 Aligned_cols=68 Identities=18% Similarity=0.102 Sum_probs=42.2
Q ss_pred hhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHH
Q 044502 121 ATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAK 200 (262)
Q Consensus 121 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak 200 (262)
..+.++-..|-.+.-... .+.|...|++|+.+. |.++.......|.++.+.. .|+.++|+...+
T Consensus 33 ~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~ 96 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTS-NGEHTKALEYYF 96 (168)
T ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345554555555543321 357888999998763 2233333345666655554 799999999988
Q ss_pred HHHH
Q 044502 201 QAFD 204 (262)
Q Consensus 201 ~afd 204 (262)
+|+.
T Consensus 97 ~Al~ 100 (168)
T CHL00033 97 QALE 100 (168)
T ss_pred HHHH
Confidence 8774
No 52
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=40.74 E-value=59 Score=35.02 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=47.9
Q ss_pred chhhHHhhhccchhh------hhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChH
Q 044502 120 EATVFYYKMKGDYYR------YLAEFKVDQERKEAAEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPE 193 (262)
Q Consensus 120 eskvfy~KmkgDyyR------YlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~ 193 (262)
....||++.-|||+. .+|++-. +-.-.++|..+|++++++ .|.||. +||+=-|+|.-. +.+
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYEEE-DKE 166 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHHHh-hHH
Confidence 444555556666543 2333321 112236788999998855 377764 566656666555 999
Q ss_pred HHHHHHHHHHHHHH
Q 044502 194 RACHLAKQAFDEAI 207 (262)
Q Consensus 194 ~A~~iak~afd~Ai 207 (262)
+|.+++++|+.--+
T Consensus 167 KA~~m~~KAV~~~i 180 (906)
T PRK14720 167 KAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999977644
No 53
>COG4499 Predicted membrane protein [Function unknown]
Probab=38.49 E-value=50 Score=32.18 Aligned_cols=47 Identities=28% Similarity=0.391 Sum_probs=40.0
Q ss_pred hhhhhhhHHHHHHHhCChHHHHHHHHHH-----HHHHHHhhccCCccchHhH
Q 044502 175 LGLALNFSVFYYEIMNSPERACHLAKQA-----FDEAIAELDTLSEESYKDS 221 (262)
Q Consensus 175 LgLaLN~SVF~yEi~~~~~~A~~iak~a-----fd~Ai~~ld~l~ee~y~ds 221 (262)
|-|++=|++|+|-+.-..+.||.-|.+| +++.|..|+.+|.++-+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 3467889999999999999999999999 5889999999988765554
No 54
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=36.92 E-value=6e+02 Score=27.82 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Q 044502 13 YMAKLAEQAERYEEMVESMKKVA 35 (262)
Q Consensus 13 ~~Aklaeq~eRy~dm~~~mk~~i 35 (262)
.++.+..+.|+|++.+...++++
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHh
Confidence 34444455566666665555544
No 55
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.72 E-value=2.4e+02 Score=23.99 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhh
Q 044502 26 EMVESMKKVAKLGCEMTVEERNLLSVGYKNVIG 58 (262)
Q Consensus 26 dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~ 58 (262)
..++..+++++...+||.+|++.|..+...++-
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhh
Confidence 456777888888899999999999999988764
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=34.07 E-value=1.3e+02 Score=24.69 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 205 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 205 (262)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|+..
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 468889998887642 222223345666666665 79999999988777653
No 57
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=33.73 E-value=50 Score=23.68 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=19.5
Q ss_pred HHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHH
Q 044502 156 YEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 201 (262)
Q Consensus 156 Y~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~ 201 (262)
|.+|+++.+. .+.+|..+....-++--++ -+|+.++|+..-++
T Consensus 41 y~~A~~~~~~--~~~~~~~~~~~~l~a~~~~-~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 41 YEEAIELLQK--LKLDPSNPDIHYLLARCLL-KLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHC--HTHHHCHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhc
Confidence 4444444432 2333333343443433333 36777777765544
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=33.54 E-value=1.1e+02 Score=27.16 Aligned_cols=162 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHH
Q 044502 13 YMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHK 92 (262)
Q Consensus 13 ~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~k 92 (262)
.+|.|+...+++++.+.+..+++..++.-...-.+|... + .-+....+.+++...-++.. ........+.-|
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~--~~~~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~--- 120 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L--QDGDPEEALKLAEKAYERDG--DPRYLLSALQLY--- 120 (280)
T ss_dssp --------------------------------------------------------------------------H-H---
T ss_pred ccccccccccccccccccccccccccccccccccccccc-c--cccccccccccccccccccc--ccchhhHHHHHH---
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 044502 93 VEEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPSTHP 172 (262)
Q Consensus 93 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~p 172 (262)
.-..-..++.++|+... .....+.-.+|+-+.|.+|.-.-+ .++|..+|++|+.+. |.||
T Consensus 121 ---~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~a~~~~~~G~----------~~~A~~~~~~al~~~-----P~~~ 180 (280)
T PF13429_consen 121 ---YRLGDYDEAEELLEKLE--ELPAAPDSARFWLALAEIYEQLGD----------PDKALRDYRKALELD-----PDDP 180 (280)
T ss_dssp ---HHTT-HHHHHHHHHHHH--H-T---T-HHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHH------TT-H
T ss_pred ---HHHhHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcC-----CCCH
Q ss_pred chhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHH
Q 044502 173 IRLGLALNFSVFYYEIMNSPERACHLAKQAFDEA 206 (262)
Q Consensus 173 irLgLaLN~SVF~yEi~~~~~~A~~iak~afd~A 206 (262)
- +++.-++.+--.|+.++|..+.+..-..+
T Consensus 181 ~----~~~~l~~~li~~~~~~~~~~~l~~~~~~~ 210 (280)
T PF13429_consen 181 D----ARNALAWLLIDMGDYDEAREALKRLLKAA 210 (280)
T ss_dssp H----HHHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred H----HHHHHHHHHHHCCChHHHHHHHHHHHHHC
No 59
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=32.57 E-value=1.5e+02 Score=19.73 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=36.8
Q ss_pred HhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhh
Q 044502 20 QAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQK 73 (262)
Q Consensus 20 q~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk 73 (262)
+.|+|++.+..+++++..+|. +.+=+-.|..+|-.. +..-.|.+++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 468899999999999988777 666666676666554 6666677777665444
No 60
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.12 E-value=1.5e+02 Score=25.92 Aligned_cols=84 Identities=26% Similarity=0.295 Sum_probs=49.3
Q ss_pred cchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCCCc---chhhhhhhhHHHHHHHhCChHHHHH---HHHHHH
Q 044502 130 GDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPSTHP---IRLGLALNFSVFYYEIMNSPERACH---LAKQAF 203 (262)
Q Consensus 130 gDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~p---irLgLaLN~SVF~yEi~~~~~~A~~---iak~af 203 (262)
|...==++-|..+.+.+..++.|..-|++|+.+- |..+ .-||.|+--=-|+ ..+..+|-. .|...|
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~-----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~F 103 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN-----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYF 103 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHH
Confidence 4444456667788888889999999999998663 2222 4466665544443 355555544 556668
Q ss_pred HHHHHhhccCCccchHhHHH
Q 044502 204 DEAIAELDTLSEESYKDSTL 223 (262)
Q Consensus 204 d~Ai~~ld~l~ee~y~ds~~ 223 (262)
+.|... .-+.+.|+-+..
T Consensus 104 qkAv~~--~P~ne~Y~ksLe 121 (186)
T PF06552_consen 104 QKAVDE--DPNNELYRKSLE 121 (186)
T ss_dssp HHHHHH---TT-HHHHHHHH
T ss_pred HHHHhc--CCCcHHHHHHHH
Confidence 888763 234456776643
No 61
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=32.04 E-value=1.9e+02 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAK 36 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~ 36 (262)
.++-.|--+++.|+|++.+.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566777888999999988888775
No 62
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=31.86 E-value=2.1e+02 Score=21.17 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAK 36 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~ 36 (262)
.++-+|--+++.|||++.+.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456667777888999988877666654
No 63
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=31.68 E-value=1.7e+02 Score=23.29 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDE 205 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~ 205 (262)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5799999999752 244 5555556666665555 579999999999887654
No 64
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=31.42 E-value=92 Score=21.25 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGC 39 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~ 39 (262)
...+|.+..+.|+|.+.+..+.++++..|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666666777777766666665544
No 65
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=30.04 E-value=3.8e+02 Score=27.99 Aligned_cols=165 Identities=17% Similarity=0.212 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHhhh-hhhhHHHHHHHHhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 044502 41 MTVEERNLLSVGYKNV-IGARRASWRIMSSIEQKEESKGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHLIPSSTSG 119 (262)
Q Consensus 41 Lt~eERnLLsvayKn~-i~~~R~s~R~l~~ieqk~~~~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~ 119 (262)
|++.|-.||-.+.|.. ..+++.+++.+.+|-.+....|.+-..+-+.-+.--=. ++....|-.-|- .+.
T Consensus 3 l~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~-------~ea~~~vr~glr---~d~ 72 (700)
T KOG1156|consen 3 LSPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK-------EEAYELVRLGLR---NDL 72 (700)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch-------HHHHHHHHHHhc---cCc
Confidence 8889999999999984 56679999999988876544444322211111100001 233333332221 122
Q ss_pred chhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccC------------------------------CC
Q 044502 120 EATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDL------------------------------PS 169 (262)
Q Consensus 120 eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L------------------------------~p 169 (262)
.| -++|+.-|=+||---++ ..|..||+.|+.+...++ |.
T Consensus 73 ~S-~vCwHv~gl~~R~dK~Y----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~ 141 (700)
T KOG1156|consen 73 KS-HVCWHVLGLLQRSDKKY----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS 141 (700)
T ss_pred cc-chhHHHHHHHHhhhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh
Confidence 22 35677777777632211 457778888865543222 11
Q ss_pred CCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhcc
Q 044502 170 THPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTS 237 (262)
Q Consensus 170 t~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~ 237 (262)
.|.-++|+| |=++ ..|+...|..|...-..... ..++-+.|.-+..+ |..|..+-..
T Consensus 142 ~ra~w~~~A----vs~~-L~g~y~~A~~il~ef~~t~~---~~~s~~~~e~se~~---Ly~n~i~~E~ 198 (700)
T KOG1156|consen 142 QRASWIGFA----VAQH-LLGEYKMALEILEEFEKTQN---TSPSKEDYEHSELL---LYQNQILIEA 198 (700)
T ss_pred hHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHhhc---cCCCHHHHHHHHHH---HHHHHHHHHc
Confidence 222233333 3233 35888888888765444433 45566666655544 3444444433
No 66
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=29.67 E-value=3.5e+02 Score=22.90 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhhhhhhHHHHHHHHhhh
Q 044502 9 ETHVYMAKLAEQAERYEEMVESMKKVAKLGCEM--TVEERNLLSVGYKNVIGARRASWRIMSSIE 71 (262)
Q Consensus 9 e~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~L--t~eERnLLsvayKn~i~~~R~s~R~l~~ie 71 (262)
+.+..++...-+.|+|++.+..+.+++..+|.- ..+-+..+..+|-.. +....|...+..+.
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l 97 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFI 97 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Confidence 456677778888999999999999999877643 334445555554432 44555555555443
No 67
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=29.39 E-value=7.9e+02 Score=26.98 Aligned_cols=55 Identities=9% Similarity=-0.113 Sum_probs=34.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 044502 13 YMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSS 69 (262)
Q Consensus 13 ~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ 69 (262)
.++.++-..|+|++.+..+++++..+|.-. .=...|..+|.. .+....|.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345566678999999999999998877532 233344555432 3444555555543
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=29.22 E-value=2.3e+02 Score=22.68 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFD 204 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd 204 (262)
.+.|..+|+.|+.+ .|.+|- ...|.++-+ .-+|++++|+....+|+.
T Consensus 74 ~~~A~~~y~~Al~l-----~p~~~~---a~~~lg~~l-~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 74 YTTAINFYGHALML-----DASHPE---PVYQTGVCL-KMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHhc-----CCCCcH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Confidence 35789999999854 455542 122222322 247999999887666654
No 69
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=28.02 E-value=1.5e+02 Score=27.85 Aligned_cols=46 Identities=17% Similarity=0.136 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhc--cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 044502 154 KGYEAASATANK--DLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 203 (262)
Q Consensus 154 ~aY~~A~~~a~~--~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~af 203 (262)
.-|++|+..+.. .+.|.+| ...++.++.++. +|+.+.|+...++|+
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~---~a~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLA---KAYLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCH---HHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 445555555432 2444333 233444444443 577777766444433
No 70
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=27.80 E-value=3.4e+02 Score=22.15 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHH------hCChHHHHHHHHHHHHHHHHhhccCCccchHhHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEI------MNSPERACHLAKQAFDEAIAELDTLSEESYKDSTL 223 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi------~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 223 (262)
+.|..+|++|+.+. |.++ ....+.+..++.+ .++.+.|....++|.+-.-.-+ .++.+.|.++..
T Consensus 89 ~~A~~~~~~al~~~-----p~~~---~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 159 (172)
T PRK02603 89 DKALEYYHQALELN-----PKQP---SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-RLAPNNYIEAQN 159 (172)
T ss_pred HHHHHHHHHHHHhC-----cccH---HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHH
Confidence 56888899888652 3332 2223444444432 2345555554444433222212 244555655544
Q ss_pred HHH
Q 044502 224 IMQ 226 (262)
Q Consensus 224 Ilq 226 (262)
.+.
T Consensus 160 ~~~ 162 (172)
T PRK02603 160 WLK 162 (172)
T ss_pred HHH
Confidence 443
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=26.76 E-value=89 Score=28.52 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 203 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~af 203 (262)
.+.|.+.|++|+.++-. + =-+--||.-|++.. |.+++|...-.+|.
T Consensus 85 ~~~A~e~YrkAlsl~p~-----~---GdVLNNYG~FLC~q-g~~~eA~q~F~~Al 130 (250)
T COG3063 85 NDLADESYRKALSLAPN-----N---GDVLNNYGAFLCAQ-GRPEEAMQQFERAL 130 (250)
T ss_pred hhhHHHHHHHHHhcCCC-----c---cchhhhhhHHHHhC-CChHHHHHHHHHHH
Confidence 36789999999866532 2 12345899999995 69999877655543
No 72
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=26.65 E-value=1.2e+02 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 044502 24 YEEMVESMKKVAKLGCEMTVEERNLLSVGYK 54 (262)
Q Consensus 24 y~dm~~~mk~~i~~~~~Lt~eERnLLsvayK 54 (262)
.=||...++. .+.+.|+.+|+.+|..+.-
T Consensus 40 tID~L~mL~e--KTkGNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 40 TIDLLAMLQE--KTKGNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHHH--HHccCCCHHHHHHHHHHHH
Confidence 3356655554 5689999999999977643
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=26.58 E-value=8.9e+02 Score=26.61 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCEM 41 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~L 41 (262)
..+.+|++.-..|+|++.+..+++++..+|+-
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~ 145 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPPE 145 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCC
Confidence 35778899999999999999999998765543
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=25.86 E-value=4.9e+02 Score=23.38 Aligned_cols=163 Identities=13% Similarity=0.001 Sum_probs=0.0
Q ss_pred hhHHhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---------hhhhhhHHHHHHHHhhhhhhhh
Q 044502 6 KERETHVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYK---------NVIGARRASWRIMSSIEQKEES 76 (262)
Q Consensus 6 ~~re~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayK---------n~i~~~R~s~R~l~~ieqk~~~ 76 (262)
+.++.....+-++-..|+++.+..++.++++..|.-. .+++ ...+.....-+.+.........
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 112 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--------LALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPD 112 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--------HHHHHhHHHHHhcccccCchhHHHHHhccCcCCCC
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHH
Q 044502 77 KGNEHNVKLIKGYRHKVEEELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGY 156 (262)
Q Consensus 77 ~~~~~~~~~i~~yr~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY 156 (262)
.......-..-.....--++-...|...+.+-... ...+..++.+.....+. +.|...|
T Consensus 113 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------------------~~~~~~la~i~~~~g~~---~eA~~~l 171 (355)
T cd05804 113 YWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------------------AWAVHAVAHVLEMQGRF---KEGIAFM 171 (355)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------------cHHHHHHHHHHHHcCCH---HHHHHHH
Q ss_pred HHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHH
Q 044502 157 EAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQA 202 (262)
Q Consensus 157 ~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~a 202 (262)
++++..... ....+....++.+.++.. .|+.++|+.+..++
T Consensus 172 ~~~l~~~~~----~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~~ 212 (355)
T cd05804 172 ESWRDTWDC----SSMLRGHNWWHLALFYLE-RGDYEAALAIYDTH 212 (355)
T ss_pred HhhhhccCC----CcchhHHHHHHHHHHHHH-CCCHHHHHHHHHHH
No 75
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.79 E-value=86 Score=32.35 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=41.7
Q ss_pred hhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 044502 127 KMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 203 (262)
Q Consensus 127 KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~af 203 (262)
++-++.||-+.....---|++--+.|+-.|++|++ +||.-.-+.--...++.. +|..++|+++-.+|+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 34555555554444332333334556666666653 456556666666777665 799999999998884
No 76
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.56 E-value=87 Score=31.68 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHH------HHHhCChHHHHHHHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFY------YEIMNSPERACHLAKQAFD 204 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~------yEi~~~~~~A~~iak~afd 204 (262)
+.|.++|.+|++++-.+ +||| |+-+|+.++-++.+.+|+.
T Consensus 132 ~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~Vied~TkALE 177 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEKVIEDCTKALE 177 (606)
T ss_pred HHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHHHHHHHHHHhh
No 77
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=24.30 E-value=3.3e+02 Score=26.27 Aligned_cols=78 Identities=23% Similarity=0.394 Sum_probs=51.6
Q ss_pred ccchhhhhhhccc---chHHHH----HHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHH
Q 044502 129 KGDYYRYLAEFKV---DQERKE----AAEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQ 201 (262)
Q Consensus 129 kgDyyRYlaE~~~---~~~~~~----~~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~ 201 (262)
-++||.|+||-.. +.++-. .-+.=.+-..++.+-|++++.- +-+| ...+|-+-||..| ||++.|.+..+.
T Consensus 53 Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE-~ev~-ea~~~kaeYycqi-gDkena~~~~~~ 129 (393)
T KOG0687|consen 53 MAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGE-SEVR-EAMLRKAEYYCQI-GDKENALEALRK 129 (393)
T ss_pred cchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcch-HHHH-HHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3678899988432 222211 1222234456667777766554 3333 3467888888876 999999999999
Q ss_pred HHHHHHHh
Q 044502 202 AFDEAIAE 209 (262)
Q Consensus 202 afd~Ai~~ 209 (262)
+++++++-
T Consensus 130 t~~ktvs~ 137 (393)
T KOG0687|consen 130 TYEKTVSL 137 (393)
T ss_pred HHHHHhhc
Confidence 99999874
No 78
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=24.26 E-value=5.2e+02 Score=23.12 Aligned_cols=30 Identities=27% Similarity=0.451 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Q 044502 9 ETHVYMAKLAEQAERYEEMVESMKKVAKLG 38 (262)
Q Consensus 9 e~l~~~Aklaeq~eRy~dm~~~mk~~i~~~ 38 (262)
.-.+.+|+++-.+|+|+=...++.++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 456789999999999999988888877644
No 79
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=23.21 E-value=2.9e+02 Score=19.76 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHhhhhhh-hhccChhhHHHHHHHHHHH
Q 044502 26 EMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSSIEQKE-ESKGNEHNVKLIKGYRHKV 93 (262)
Q Consensus 26 dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ieqk~-~~~~~~~~~~~i~~yr~ki 93 (262)
....-+...+..-+.++.++|+-...-....+..-..-+..+.. |-+. ...........++.||..+
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~-E~~~~p~s~r~~~~~kl~~yr~~l 70 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMEL-EVRSLPPSERNQYKSKLRSYRSEL 70 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444334455577777777777777777666555532 2111 1011112445566666554
No 80
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=22.73 E-value=3e+02 Score=19.89 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 044502 11 HVYMAKLAEQAERYEEMVESMKKVAKLGC--EMTVEERNLLSVGY 53 (262)
Q Consensus 11 l~~~Aklaeq~eRy~dm~~~mk~~i~~~~--~Lt~eERnLLsvay 53 (262)
+...+....+.|+|++.+..+.+++..+| .+..+-+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34455556666777777777766665443 33344444444443
No 81
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=22.55 E-value=5.6e+02 Score=22.97 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhh-hhhhhHHHHHHHhCChHHHHHHHHHHHHHHH--HhhccCCccchHhHHHHHH
Q 044502 150 EQSLKGYEAASATANKDLPSTHPIRLG-LALNFSVFYYEIMNSPERACHLAKQAFDEAI--AELDTLSEESYKDSTLIMQ 226 (262)
Q Consensus 150 ~~A~~aY~~A~~~a~~~L~pt~pirLg-LaLN~SVF~yEi~~~~~~A~~iak~afd~Ai--~~ld~l~ee~y~ds~~Ilq 226 (262)
+.|.-.|.+|-.+.. .++|....+|+ +.+|+.+-.+.--++.+.|+..-++|++-.- ..++..+.+...==..|++
T Consensus 10 ~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 568888888887775 78888989988 7889999999863499999999999987632 2333333333222356777
Q ss_pred HHHhhHhhhccC
Q 044502 227 LLRDNLTLWTSD 238 (262)
Q Consensus 227 LLrDNL~lW~~e 238 (262)
+|-...-.|...
T Consensus 89 ~La~~~l~~~~~ 100 (278)
T PF08631_consen 89 LLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHcCCCh
Confidence 777777777653
No 82
>PRK15331 chaperone protein SicA; Provisional
Probab=22.03 E-value=5.1e+02 Score=22.18 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHH
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLL 228 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLL 228 (262)
=++|.++|--|.-+... .|.-|.+.| -.|=.+|++.+|.. +|.-|+..-. ..+-..-+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~--dp~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKN--DYRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccC--CCCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 34566666666555432 222244444 34446789988876 8888877311 112223355666666
Q ss_pred HhhH
Q 044502 229 RDNL 232 (262)
Q Consensus 229 rDNL 232 (262)
..|.
T Consensus 152 ~~~~ 155 (165)
T PRK15331 152 KTAE 155 (165)
T ss_pred Hccc
Confidence 5554
No 83
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=21.88 E-value=6.7e+02 Score=23.51 Aligned_cols=59 Identities=10% Similarity=0.050 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 044502 9 ETHVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIMSS 69 (262)
Q Consensus 9 e~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l~~ 69 (262)
.-+..+|.+..+.|+|++.+..+.+++..+|.. ..=...+..+|-. .+.+..|.+.+..
T Consensus 37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 37 ELYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 345677788888899999999988888877653 3345555555543 4666666666644
No 84
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=21.82 E-value=1.5e+02 Score=22.42 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhh----hhhhhHHHHH
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRLG----LALNFSVFYY 186 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirLg----LaLN~SVF~y 186 (262)
+....+.-+.|++-- +..|.||..|+ +.-+|++|+-
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~RN 59 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYRN 59 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344555566665443 48899999998 5667777654
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.71 E-value=1.9e+02 Score=28.44 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHH
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYE 187 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yE 187 (262)
+--....||+|+++=+.-| .++|-++||-.+.+..||.
T Consensus 160 vhYmR~HYQeAIdvYkrvL-~dn~ey~alNVy~ALCyyK 197 (557)
T KOG3785|consen 160 VHYMRMHYQEAIDVYKRVL-QDNPEYIALNVYMALCYYK 197 (557)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcChhhhhhHHHHHHHHHh
Confidence 4455778999999986544 4799999999999998884
No 86
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=21.65 E-value=94 Score=24.72 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=30.3
Q ss_pred hCChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhhhccC
Q 044502 189 MNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSD 238 (262)
Q Consensus 189 ~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~lW~~e 238 (262)
......+.++=..+|..+...|....+..-. +..-+.-|.+|..+|+.-
T Consensus 10 ~~~~~~~Re~E~~~l~~a~~~L~~A~~~~~~-~~~~~~AL~~N~rLW~~~ 58 (113)
T PF07309_consen 10 AQSTRSPREIEARALARAARRLERAREAGPR-SREALEALHFNRRLWTIF 58 (113)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHH
Confidence 3334444555566777777777665532222 223239999999999963
No 87
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=1.7e+02 Score=30.59 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchh-hhhhhhHHHHHHHhC
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRL-GLALNFSVFYYEIMN 190 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirL-gLaLN~SVF~yEi~~ 190 (262)
-++..+|+++|+.+|.+.+.|+-++-| -=+||--.|+||--+
T Consensus 656 GkRVleCLkkAlkIA~qcmd~~~~vqLFIEILnrYiYfyek~n 698 (760)
T KOG1107|consen 656 GKRVLECLKKALKIAQQCMDNLRQVQLFIEILNRYIYFYEKGN 698 (760)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhhhhcCC
Confidence 467899999999999999999988777 447898888888533
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=21.48 E-value=2.1e+02 Score=25.98 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=28.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC
Q 044502 9 ETHVYMAKLAEQAERYEEMVESMKKVAKLGCE 40 (262)
Q Consensus 9 e~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~ 40 (262)
+-..+++++..+.|+|++.+.+.++++..+|.
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 34678999999999999999999999988764
No 89
>PHA02103 hypothetical protein
Probab=21.36 E-value=35 Score=27.37 Aligned_cols=14 Identities=43% Similarity=0.693 Sum_probs=11.3
Q ss_pred ccchhhhhhhcccc
Q 044502 129 KGDYYRYLAEFKVD 142 (262)
Q Consensus 129 kgDyyRYlaE~~~~ 142 (262)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 56999999986655
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=21.05 E-value=2.3e+02 Score=24.26 Aligned_cols=57 Identities=18% Similarity=0.070 Sum_probs=37.1
Q ss_pred HhHHHHHHH-HHHhCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhhhhHHHHHHH
Q 044502 9 ETHVYMAKL-AEQAER--YEEMVESMKKVAKLGCEMTVEERNLLSVGYKNVIGARRASWRIM 67 (262)
Q Consensus 9 e~l~~~Akl-aeq~eR--y~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn~i~~~R~s~R~l 67 (262)
+-+..+|.+ ..+.|+ +++....+.+++..+|. +.+=+.+|..++-. .+....|....
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~ 167 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHH
Confidence 445666774 467787 58999999999988776 44566777666543 34444444433
No 91
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=20.30 E-value=6.8e+02 Score=23.21 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-hhhhhHHHHHHHHhh
Q 044502 10 THVYMAKLAEQAERYEEMVESMKKVAKLGCEMTVEERNLLSVGYKN-VIGARRASWRIMSSI 70 (262)
Q Consensus 10 ~l~~~Aklaeq~eRy~dm~~~mk~~i~~~~~Lt~eERnLLsvayKn-~i~~~R~s~R~l~~i 70 (262)
-+..+|....-++|++..+..++++++..|-=.+.=+.|+...+++ -.+.-..+++.++..
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456777777789999999999999998766656666677777665 455555555555554
No 92
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=20.27 E-value=1.3e+02 Score=29.50 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCcchhhHHhhhccchhhhhhhcccchHHHHHHHHHHHHHHHHHHHHhccCCCC-Ccch
Q 044502 96 ELSKICGDILTIIDKHLIPSSTSGEATVFYYKMKGDYYRYLAEFKVDQERKEAAEQSLKGYEAASATANKDLPST-HPIR 174 (262)
Q Consensus 96 EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~A~~aY~~A~~~a~~~L~pt-~pir 174 (262)
=++.-|+.+|+.-+.-=-+. .=...|| -.=|=---.++.|..++......+...++|..|++.+..-+.+. +.++
T Consensus 74 GiIHECDRLLR~~e~~~~~~---~Lp~~Fh-aIYalALsELa~f~~~~~~~~~~~~v~efFdaAlER~e~Gl~~~p~s~~ 149 (404)
T PF12753_consen 74 GIIHECDRLLRNSEEEEKKK---ELPDRFH-AIYALALSELAIFKAEEEEEKKREKVSEFFDAALERVELGLEKFPDSIL 149 (404)
T ss_dssp HHHHHHHHHHHHSS-GG------GS-HHHH-HHHHHHHHHHHHTHHHHGGGS-TT--HHHHHHHHHHHHHGGSSS--H-H
T ss_pred cchHHHHHHHHccccccccc---cccHHHH-HHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHHHHHHhhhhcCCCchh
Confidence 34566777776653210000 0112444 44444444566666666554444567788899998887543321 2245
Q ss_pred hhhh-----hhhHHHHHH----HhC------ChHHHHHHHHHHHHHHHHhhccCCccchHhHHHHHHHHHhhHhh
Q 044502 175 LGLA-----LNFSVFYYE----IMN------SPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTL 234 (262)
Q Consensus 175 LgLa-----LN~SVF~yE----i~~------~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~IlqLLrDNL~l 234 (262)
|-|+ |+--.+.|= .-. +..+...-|+..|..+-.. ..++--|+|.|-|=|.+
T Consensus 150 L~l~~skIll~rIpL~yiS~L~~~S~~~~~~~l~~~Ld~a~~~f~~~~~~--------a~~~~eiLq~ldDLLdI 216 (404)
T PF12753_consen 150 LLLAKSKILLQRIPLQYISQLSVESKVEKKLDLSEQLDEALKVFEVAEKK--------AEETFEILQALDDLLDI 216 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-GGGTT------------S-HHHHHHHH--------HHHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHhccHHHHhhcccccccccccccchhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHhhH
Confidence 5554 343333331 001 1223333344444444332 23677788888775544
No 93
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.00 E-value=53 Score=34.25 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 044502 149 AEQSLKGYEAASATANKDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAF 203 (262)
Q Consensus 149 ~~~A~~aY~~A~~~a~~~L~pt~pirLgLaLN~SVF~yEi~~~~~~A~~iak~af 203 (262)
-++|..||+.|+ +++|.|.+--| |.++-|||- |+.+-||.--++|+
T Consensus 268 ~d~Avs~Y~rAl-----~lrpn~A~a~g---Nla~iYyeq-G~ldlAI~~Ykral 313 (966)
T KOG4626|consen 268 FDRAVSCYLRAL-----NLRPNHAVAHG---NLACIYYEQ-GLLDLAIDTYKRAL 313 (966)
T ss_pred chHHHHHHHHHH-----hcCCcchhhcc---ceEEEEecc-ccHHHHHHHHHHHH
Confidence 357777887776 46777766555 777888884 89888888888773
Done!