Query 044503
Match_columns 113
No_of_seqs 140 out of 214
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 03:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 7.5E-37 1.6E-41 221.9 3.4 98 13-110 15-119 (119)
2 PLN03221 rapid alkalinization 100.0 3.2E-35 7E-40 217.4 5.6 75 36-110 45-137 (137)
3 PF05498 RALF: Rapid ALkaliniz 100.0 3.4E-29 7.3E-34 165.9 2.8 65 46-110 2-66 (66)
4 PF07172 GRP: Glycine rich pro 91.7 0.23 5.1E-06 34.8 3.4 20 1-21 1-20 (95)
5 PF07172 GRP: Glycine rich pro 65.8 6.2 0.00013 27.6 2.5 18 13-30 9-26 (95)
6 PF09680 Tiny_TM_bacill: Prote 63.5 6.9 0.00015 21.6 1.9 16 4-19 4-19 (24)
7 PF15240 Pro-rich: Proline-ric 61.4 5.9 0.00013 31.1 1.9 22 13-34 3-24 (179)
8 TIGR01732 tiny_TM_bacill conse 61.1 7.7 0.00017 21.8 1.8 18 4-21 6-23 (26)
9 PF06387 Calcyon: D1 dopamine 37.5 50 0.0011 26.2 3.6 52 6-63 87-147 (186)
10 PF13179 DUF4006: Family of un 36.3 58 0.0012 21.9 3.3 24 2-25 12-35 (66)
11 PF06900 DUF1270: Protein of u 35.3 59 0.0013 21.0 3.1 19 4-22 6-24 (53)
12 PF05782 ECM1: Extracellular m 34.0 40 0.00086 30.6 2.9 21 1-25 1-21 (544)
13 PRK11874 petL cytochrome b6-f 32.4 75 0.0016 18.3 2.9 20 1-20 1-20 (30)
14 PRK06287 cobalt transport prot 29.6 60 0.0013 23.1 2.7 19 18-36 16-36 (107)
15 PF10717 ODV-E18: Occlusion-de 28.3 67 0.0015 22.6 2.7 22 8-29 31-52 (85)
16 PRK10894 lipopolysaccharide tr 25.3 91 0.002 23.4 3.2 14 9-22 6-19 (180)
17 PRK01470 tatA twin arginine tr 23.2 90 0.002 19.7 2.4 16 1-16 1-16 (51)
18 PRK00442 tatA twin arginine tr 22.7 78 0.0017 22.4 2.2 12 1-12 1-13 (92)
19 PF04360 Serglycin: Serglycin 21.8 89 0.0019 24.1 2.5 32 31-62 31-67 (150)
20 PF12911 OppC_N: N-terminal TM 21.5 1.4E+02 0.003 17.8 2.9 17 8-24 19-35 (56)
21 PRK00191 tatA twin arginine tr 20.4 1.1E+02 0.0023 21.4 2.5 16 1-16 1-16 (84)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=221.94 Aligned_cols=98 Identities=42% Similarity=0.749 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhhcccc-CCCC-C-CCccc-e-eccc--CcccccCCCccccccccCCCccccccccCCCCCCCCCCCC
Q 044503 13 FLALGIVMAMMASETNAF-DSGN-W-GRLTN-I-GRIE--DDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGAS 85 (113)
Q Consensus 13 ~~~~~~~la~~~~~~~~~-~~~~-~-~~C~g-v-ec~~--~eeE~~m~se~~RR~L~~~~yIsY~aL~~~~vpC~~~g~s 85 (113)
+|.+.+++|.+.+...+. +++- . ..|+| + ||+. +|+|++||||++||+|++++||||+||++|++||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~~rYISYgALrrd~vPCsrrG~S 94 (119)
T PLN03222 15 ILTVHFLFAAVTSQSTGFSGDFMPIDSKCNGTIAECSLSTAEEEFEMDSEINRRILATTKYISYGALRRNTVPCSRRGAS 94 (119)
T ss_pred hhHHHHHHHHhhcccccccccccCCCCcCCCCHHHhhcccccchhccccHHHHHHHhhcCeecHHHhcCCCCCCCCCCCC
Confidence 344555666676665443 2221 1 46999 8 9985 4778999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcccccccC
Q 044503 86 YYNCNGGGPTNPYRRGCTAITNCQR 110 (113)
Q Consensus 86 Y~nC~~~~~aNPYtRGCs~itrCrr 110 (113)
||||++++|+|||+|||++||||||
T Consensus 95 YynC~~~~~ANPY~RGCs~ITrCrR 119 (119)
T PLN03222 95 YYNCRRGAQANPYSRGCSAITRCRR 119 (119)
T ss_pred ccccCCCCCCCCCCCCchhhccccC
Confidence 9999998999999999999999997
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=100.00 E-value=3.2e-35 Score=217.41 Aligned_cols=75 Identities=48% Similarity=0.866 Sum_probs=68.8
Q ss_pred CCccc-e-ecc-------------cCcc---cccCCCccccccccCCCccccccccCCCCCCCCCCCCccCCCCCCCCCC
Q 044503 36 GRLTN-I-GRI-------------EDDT---EVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNP 97 (113)
Q Consensus 36 ~~C~g-v-ec~-------------~~ee---E~~m~se~~RR~L~~~~yIsY~aL~~~~vpC~~~g~sY~nC~~~~~aNP 97 (113)
..|.| + ||+ +++| |++||||++||+|++++||||+||++|++||+++|+|||||++++|+||
T Consensus 45 ~~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~~rYISYgALrrd~vPCsrrG~SYynC~~~~pANP 124 (137)
T PLN03221 45 TECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILATRRYISYGALRRNTIPCSRRGASYYNCRRGAQANP 124 (137)
T ss_pred CcccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhcCCccCHHHhccCCCCCCCCCCCccccCCCCCCCC
Confidence 45999 8 996 2222 7899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccC
Q 044503 98 YRRGCTAITNCQR 110 (113)
Q Consensus 98 YtRGCs~itrCrr 110 (113)
|+|||++||||||
T Consensus 125 Y~RGCs~ITRCrR 137 (137)
T PLN03221 125 YSRGCSAITRCRR 137 (137)
T ss_pred CCCCcccccccCC
Confidence 9999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.95 E-value=3.4e-29 Score=165.90 Aligned_cols=65 Identities=54% Similarity=1.031 Sum_probs=62.0
Q ss_pred CcccccCCCccccccccCCCccccccccCCCCCCCCCCCCccCCCCCCCCCCCCCCCcccccccC
Q 044503 46 DDTEVLMPTEDSRRHLNAAGFISYRALQGNSVPCNRRGASYYNCNGGGPTNPYRRGCTAITNCQR 110 (113)
Q Consensus 46 ~eeE~~m~se~~RR~L~~~~yIsY~aL~~~~vpC~~~g~sY~nC~~~~~aNPYtRGCs~itrCrr 110 (113)
+|+|+.|+||++||+|++++||||+||++|++||.++|.+|++|.+++|+|||+|||++||||||
T Consensus 2 ee~~~~~~s~~~~R~~a~~~yIsYgaL~~~~~pc~~~g~~~~~c~~~~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 2 EEEEVVMESEASRRILAARRYISYGALRRDRVPCSPRGCSYYNCCPRQPANPYSRGCSKITRCRR 66 (66)
T ss_pred hhHHhhhhhHHHHHHHhcCCeecchhccCCCCCCCcccCCCcccCCCCCCCCCCCCCCccccCCC
Confidence 46789999999999999989999999999999999999999999888999999999999999997
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=91.72 E-value=0.23 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 044503 1 MGTAKQLLISMVFLALGIVMA 21 (113)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~la 21 (113)
|. +|.++++.+|||++|+|+
T Consensus 1 Ma-SK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAALLLIS 20 (95)
T ss_pred Cc-hhHHHHHHHHHHHHHHHH
Confidence 77 555555544555544443
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=65.79 E-value=6.2 Score=27.64 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhhhcccc
Q 044503 13 FLALGIVMAMMASETNAF 30 (113)
Q Consensus 13 ~~~~~~~la~~~~~~~~~ 30 (113)
|.+++++|.+++|++++.
T Consensus 9 L~l~LA~lLlisSevaa~ 26 (95)
T PF07172_consen 9 LGLLLAALLLISSEVAAR 26 (95)
T ss_pred HHHHHHHHHHHHhhhhhH
Confidence 333444555666666653
No 6
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=63.48 E-value=6.9 Score=21.62 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 044503 4 AKQLLISMVFLALGIV 19 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (113)
..|.+++.+|++|+++
T Consensus 4 ~~FalivVLFILLiIv 19 (24)
T PF09680_consen 4 SGFALIVVLFILLIIV 19 (24)
T ss_pred ccchhHHHHHHHHHHh
Confidence 4678888877776543
No 7
>PF15240 Pro-rich: Proline-rich
Probab=61.41 E-value=5.9 Score=31.09 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhccccCCCC
Q 044503 13 FLALGIVMAMMASETNAFDSGN 34 (113)
Q Consensus 13 ~~~~~~~la~~~~~~~~~~~~~ 34 (113)
+|+|.+||-+++||-+...+++
T Consensus 3 lVLLSvALLALSSAQ~~dEdv~ 24 (179)
T PF15240_consen 3 LVLLSVALLALSSAQSTDEDVS 24 (179)
T ss_pred hHHHHHHHHHhhhccccccccc
Confidence 3344444444566665554554
No 8
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=61.07 E-value=7.7 Score=21.82 Aligned_cols=18 Identities=39% Similarity=0.401 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 044503 4 AKQLLISMVFLALGIVMA 21 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~~la 21 (113)
..|.+++.+|++|+++.+
T Consensus 6 ~gf~livVLFILLIIiga 23 (26)
T TIGR01732 6 GGFALIVVLFILLVIVGA 23 (26)
T ss_pred cchHHHHHHHHHHHHhhe
Confidence 457788888887766544
No 9
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=37.46 E-value=50 Score=26.23 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCc-cc-e----ecccCccc---ccCCCccccccccC
Q 044503 6 QLLISMVFLALGIVMAMMASETNAFDSGNWGRL-TN-I----GRIEDDTE---VLMPTEDSRRHLNA 63 (113)
Q Consensus 6 ~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~~C-~g-v----ec~~~eeE---~~m~se~~RR~L~~ 63 (113)
..++.++|++-++.|.|- -+.+ .+ .+| +| + -|....=| -+||.+.+||+++.
T Consensus 87 lI~~alAfl~Cv~~Lv~Y----Ka~w-YD-qsCPdGFv~khk~C~P~~LemYY~eqdp~~~~~~~ta 147 (186)
T PF06387_consen 87 LIAFALAFLGCVVFLVMY----KAIW-YD-QSCPDGFVLKHKRCTPLTLEMYYTEQDPERRRSLYTA 147 (186)
T ss_pred HHHHHHHHHHHHHHHHhh----eeee-ec-ccCCCcceeecccccchhhhheecccCCCcccchhhh
Confidence 344555566655555543 2220 11 477 56 3 48643223 36889999999975
No 10
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=36.31 E-value=58 Score=21.86 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 044503 2 GTAKQLLISMVFLALGIVMAMMAS 25 (113)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~la~~~~ 25 (113)
|+.-++++++++|++++.|...+-
T Consensus 12 Gi~G~LIAvvLLLsIl~~lt~~ai 35 (66)
T PF13179_consen 12 GITGMLIAVVLLLSILAFLTYWAI 35 (66)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHH
Confidence 556677888877777666655443
No 11
>PF06900 DUF1270: Protein of unknown function (DUF1270); InterPro: IPR009682 This entry is represented by Bacteriophage 92, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus and phage proteins of 53 residues in length. The function of this family is unknown.
Probab=35.30 E-value=59 Score=21.04 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 044503 4 AKQLLISMVFLALGIVMAM 22 (113)
Q Consensus 4 ~~~~~~~~~~~~~~~~la~ 22 (113)
-||+++.+.|.+|.++|..
T Consensus 6 kSylIA~l~ftvlsi~L~~ 24 (53)
T PF06900_consen 6 KSYLIANLCFTVLSIALMP 24 (53)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999988888777764
No 12
>PF05782 ECM1: Extracellular matrix protein 1 (ECM1); InterPro: IPR008605 This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalised thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness [].; GO: 0005576 extracellular region
Probab=34.03 E-value=40 Score=30.57 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=13.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhh
Q 044503 1 MGTAKQLLISMVFLALGIVMAMMAS 25 (113)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~la~~~~ 25 (113)
|||.+-+++++ ++|||+.+|+
T Consensus 1 MGt~srAALvL----acLAvaSaAS 21 (544)
T PF05782_consen 1 MGTMSRAALVL----ACLAVASAAS 21 (544)
T ss_pred CchHHHHHHHH----HHHHHHHHhh
Confidence 89888776666 5555554444
No 13
>PRK11874 petL cytochrome b6-f complex subunit PetL; Reviewed
Probab=32.38 E-value=75 Score=18.30 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=14.2
Q ss_pred CchhHHHHHHHHHHHHHHHH
Q 044503 1 MGTAKQLLISMVFLALGIVM 20 (113)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~l 20 (113)
||+..|...+.+|+.+.+.|
T Consensus 1 mgvv~y~~~l~~~~g~A~gl 20 (30)
T PRK11874 1 MGIVFFLGYLGVFTGIALGL 20 (30)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 78888888877776654444
No 14
>PRK06287 cobalt transport protein CbiN; Validated
Probab=29.61 E-value=60 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=9.9
Q ss_pred HHHHHHhh--hccccCCCCCC
Q 044503 18 IVMAMMAS--ETNAFDSGNWG 36 (113)
Q Consensus 18 ~~la~~~~--~~~~~~~~~~~ 36 (113)
+++|.+.+ |++.-+.|+|.
T Consensus 16 ll~a~~~s~~AS~~PDGLEws 36 (107)
T PRK06287 16 LLIAILAPFLASGDPDGLESA 36 (107)
T ss_pred HHHHHHHHhhhcCCCcHHHHH
Confidence 34444444 33444677883
No 15
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=28.32 E-value=67 Score=22.59 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccc
Q 044503 8 LISMVFLALGIVMAMMASETNA 29 (113)
Q Consensus 8 ~~~~~~~~~~~~la~~~~~~~~ 29 (113)
+++++.++|++.|..++|-.+.
T Consensus 31 LivLVIIiLlImlfqsSS~~~~ 52 (85)
T PF10717_consen 31 LIVLVIIILLIMLFQSSSNGNS 52 (85)
T ss_pred HHHHHHHHHHHHHHhccCCCCC
Confidence 3444444455555555554433
No 16
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=25.34 E-value=91 Score=23.36 Aligned_cols=14 Identities=0% Similarity=0.228 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 044503 9 ISMVFLALGIVMAM 22 (113)
Q Consensus 9 ~~~~~~~~~~~la~ 22 (113)
+.+++++++|+++.
T Consensus 6 ~~~~~~~~ll~~~~ 19 (180)
T PRK10894 6 LNLLLASSLLAASI 19 (180)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555555443
No 17
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=23.23 E-value=90 Score=19.68 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=9.1
Q ss_pred CchhHHHHHHHHHHHH
Q 044503 1 MGTAKQLLISMVFLAL 16 (113)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (113)
||..-..+++.++++|
T Consensus 1 mgig~~elliI~vi~l 16 (51)
T PRK01470 1 MGMSFSHLLIVLLIIF 16 (51)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6666666666644444
No 18
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=22.73 E-value=78 Score=22.42 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=5.6
Q ss_pred CchhHH-HHHHHH
Q 044503 1 MGTAKQ-LLISMV 12 (113)
Q Consensus 1 ~~~~~~-~~~~~~ 12 (113)
||..+. ++++++
T Consensus 1 Mg~~g~~elliIl 13 (92)
T PRK00442 1 MGIFDWKHWIVIL 13 (92)
T ss_pred CCCccHHHHHHHH
Confidence 554433 555543
No 19
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=21.77 E-value=89 Score=24.06 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=18.9
Q ss_pred CCCCCCCcc--c-e-ecccC-cccccCCCcccccccc
Q 044503 31 DSGNWGRLT--N-I-GRIED-DTEVLMPTEDSRRHLN 62 (113)
Q Consensus 31 ~~~~~~~C~--g-v-ec~~~-eeE~~m~se~~RR~L~ 62 (113)
.-..|-.|+ + - .|+++ .--|.+....+-||+.
T Consensus 31 ArYqWVrC~PDsnsANCieEKGP~FdL~pGesnrI~p 67 (150)
T PF04360_consen 31 ARYQWVRCNPDSNSANCIEEKGPLFDLLPGESNRILP 67 (150)
T ss_pred cceeEEecCCCCCCCccccccCCceecCCCccccCCC
Confidence 335588896 3 3 89864 2236664445566663
No 20
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.50 E-value=1.4e+02 Score=17.76 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 044503 8 LISMVFLALGIVMAMMA 24 (113)
Q Consensus 8 ~~~~~~~~~~~~la~~~ 24 (113)
++.++++++++++|..+
T Consensus 19 ~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 19 VIGLIILLILVLLAIFA 35 (56)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 21
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=20.44 E-value=1.1e+02 Score=21.40 Aligned_cols=16 Identities=19% Similarity=0.173 Sum_probs=8.9
Q ss_pred CchhHHHHHHHHHHHH
Q 044503 1 MGTAKQLLISMVFLAL 16 (113)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (113)
||..-..++++++++|
T Consensus 1 m~ig~~ElliI~vI~l 16 (84)
T PRK00191 1 MSLGPWEIGIIVLLII 16 (84)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 6666666666644433
Done!