Query 044503
Match_columns 113
No_of_seqs 140 out of 214
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:13:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044503.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044503hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oqw_A Fimbrial protein; type 16.7 1.1E+02 0.0038 20.6 3.0 16 7-22 6-21 (144)
2 3sok_A Fimbrial protein; pilus 16.5 1.1E+02 0.0038 21.0 3.0 16 7-22 6-21 (151)
3 1cz6_A Protein (androctonin); 16.2 53 0.0018 17.4 0.9 15 78-92 9-23 (26)
4 2hi2_A Fimbrial protein; type 15.4 95 0.0033 21.1 2.4 16 7-22 6-21 (158)
5 1wqb_A Aptotoxin VII; spider'S 10.9 1.3E+02 0.0044 16.5 1.6 16 30-45 11-26 (32)
6 1e9t_A HITF, intestinal trefoi 10.4 2E+02 0.007 17.4 2.6 16 75-90 17-32 (59)
7 1co7_I BPTI, bovine pancreatic 9.8 63 0.0021 21.3 0.0 6 16-21 14-19 (99)
8 1qle_D Cytochrome AA3, ccytoch 7.8 2.4E+02 0.0081 16.3 2.0 7 16-22 34-40 (43)
9 3arc_L Photosystem II reaction 7.6 3.3E+02 0.011 15.5 2.5 12 3-14 15-26 (37)
10 3u02_A Putative transcription- 7.4 1.2E+02 0.004 23.6 0.6 12 94-105 46-58 (252)
No 1
>1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1
Probab=16.73 E-value=1.1e+02 Score=20.60 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 044503 7 LLISMVFLALGIVMAM 22 (113)
Q Consensus 7 ~~~~~~~~~~~~~la~ 22 (113)
+++++++++++++++.
T Consensus 6 llivi~Ii~il~~ia~ 21 (144)
T 1oqw_A 6 LMIVVAIIGILAAIAI 21 (144)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555566655554
No 2
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=16.51 E-value=1.1e+02 Score=20.98 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 044503 7 LLISMVFLALGIVMAM 22 (113)
Q Consensus 7 ~~~~~~~~~~~~~la~ 22 (113)
+++++++++++++++.
T Consensus 6 llvviaIigiLaaia~ 21 (151)
T 3sok_A 6 LMIVVAIIGILAAFAI 21 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555556655554
No 3
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=16.16 E-value=53 Score=17.41 Aligned_cols=15 Identities=47% Similarity=1.190 Sum_probs=10.8
Q ss_pred CCCCCCCCccCCCCC
Q 044503 78 PCNRRGASYYNCNGG 92 (113)
Q Consensus 78 pC~~~g~sY~nC~~~ 92 (113)
-|.++|--||.|..+
T Consensus 9 icrrrggcyykctnr 23 (26)
T 1cz6_A 9 ICRRRGGCYYKCTNR 23 (26)
T ss_dssp ECCSSSCCEEEECCC
T ss_pred HHHhcCceEEEccCC
Confidence 377777778888764
No 4
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=15.45 E-value=95 Score=21.10 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 044503 7 LLISMVFLALGIVMAM 22 (113)
Q Consensus 7 ~~~~~~~~~~~~~la~ 22 (113)
++++++++.+++++++
T Consensus 6 l~vvi~ii~il~~~~~ 21 (158)
T 2hi2_A 6 LMIVIAIVGILAAVAL 21 (158)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445545555555443
No 5
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=10.85 E-value=1.3e+02 Score=16.54 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=10.9
Q ss_pred cCCCCCCCccceeccc
Q 044503 30 FDSGNWGRLTNIGRIE 45 (113)
Q Consensus 30 ~~~~~~~~C~gvec~~ 45 (113)
-++.+|+-|.|..|-+
T Consensus 11 cgpwewpccsglkcdg 26 (32)
T 1wqb_A 11 CGPWEWPCCSGLKCDG 26 (32)
T ss_dssp CCSSSSCBCTTCEESS
T ss_pred cCCccCccccCccccC
Confidence 4677888888755543
No 6
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=10.42 E-value=2e+02 Score=17.36 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCccCCC
Q 044503 75 NSVPCNRRGASYYNCN 90 (113)
Q Consensus 75 ~~vpC~~~g~sY~nC~ 90 (113)
+++.|...|.+-..|.
T Consensus 17 ~R~dCG~pgit~~~C~ 32 (59)
T 1e9t_A 17 DRVDCGYPHVTPKECN 32 (59)
T ss_dssp TCCCCCCSSCCTTTTT
T ss_pred hcccCCCCCCCHHHHh
Confidence 4455533333333443
No 7
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=9.78 E-value=63 Score=21.29 Aligned_cols=6 Identities=33% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHH
Q 044503 16 LGIVMA 21 (113)
Q Consensus 16 ~~~~la 21 (113)
|+.+|.
T Consensus 14 ll~~l~ 19 (99)
T 1co7_I 14 LLGTLA 19 (99)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333333
No 8
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=7.85 E-value=2.4e+02 Score=16.28 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 044503 16 LGIVMAM 22 (113)
Q Consensus 16 ~~~~la~ 22 (113)
++++||+
T Consensus 34 ~ll~mai 40 (43)
T 1qle_D 34 VLVFLAL 40 (43)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334443
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=7.58 E-value=3.3e+02 Score=15.52 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHH
Q 044503 3 TAKQLLISMVFL 14 (113)
Q Consensus 3 ~~~~~~~~~~~~ 14 (113)
|+-|+.++++|+
T Consensus 15 TSLy~GLLlifv 26 (37)
T 3arc_L 15 TSLYLGLLLILV 26 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 344555555433
No 10
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=7.40 E-value=1.2e+02 Score=23.65 Aligned_cols=12 Identities=50% Similarity=0.971 Sum_probs=0.0
Q ss_pred CCCCC-CCCCccc
Q 044503 94 PTNPY-RRGCTAI 105 (113)
Q Consensus 94 ~aNPY-tRGCs~i 105 (113)
|..|| ||||...
T Consensus 46 P~iP~KTrgN~a~ 58 (252)
T 3u02_A 46 PNVPYKTRGNGAV 58 (252)
T ss_dssp TTC-----CCEEE
T ss_pred CCCCccCCCCcEE
Done!