Query 044503
Match_columns 113
No_of_seqs 140 out of 214
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044503.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044503hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1omca_ g.3.6.1 (A:) Conotoxin 33.9 6.4 0.00046 19.9 0.8 20 78-102 7-26 (27)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 28.5 23 0.0017 21.2 3.0 16 7-22 6-21 (158)
3 d1e9ta_ g.16.1.1 (A:) Intestin 18.0 43 0.0032 19.1 2.6 17 75-91 17-33 (59)
4 d1hvwa_ g.3.6.2 (A:) Atracotox 17.3 24 0.0017 17.5 1.1 13 90-102 2-14 (26)
5 d1ce3a_ g.69.1.1 (A:) Multidom 9.9 1.4E+02 0.01 16.9 3.2 28 74-103 3-30 (54)
6 d2v5za2 d.16.1.5 (A:290-401) M 9.3 47 0.0034 19.1 0.8 10 95-104 101-110 (112)
7 d2dw4a3 d.16.1.5 (A:655-763) L 8.7 61 0.0044 18.2 1.2 11 94-104 98-108 (109)
8 d1cr8a_ g.12.1.1 (A:) Ligand-b 8.7 54 0.0039 17.2 0.9 15 36-50 22-37 (42)
9 d1d2la_ g.12.1.1 (A:) Ligand-b 7.7 55 0.004 17.5 0.6 14 36-49 23-37 (45)
10 d1k7ba_ g.12.1.1 (A:) soluble 7.5 68 0.005 16.7 0.9 14 37-50 25-39 (42)
No 1
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=33.95 E-value=6.4 Score=19.91 Aligned_cols=20 Identities=45% Similarity=1.104 Sum_probs=12.1
Q ss_pred CCCCCCCCccCCCCCCCCCCCCCCC
Q 044503 78 PCNRRGASYYNCNGGGPTNPYRRGC 102 (113)
Q Consensus 78 pC~~~g~sY~nC~~~~~aNPYtRGC 102 (113)
.|++. | |||.. .-|||+.-|
T Consensus 7 scspt--s-ynccr--scnpytkrc 26 (27)
T d1omca_ 7 SCSPT--S-YNCCR--SCNPYTKRC 26 (27)
T ss_dssp BCCTT--T-TCBSS--CEETTTTEE
T ss_pred cCCCc--c-cchhc--ccCcccccc
Confidence 46652 3 46665 567898654
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=28.47 E-value=23 Score=21.15 Aligned_cols=16 Identities=19% Similarity=0.422 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 044503 7 LLISMVFLALGIVMAM 22 (113)
Q Consensus 7 ~~~~~~~~~~~~~la~ 22 (113)
|+++++.|.+|++|+.
T Consensus 6 LlVViaIIgILaaia~ 21 (158)
T d2pila_ 6 LMIVIAIVGILAAVAL 21 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555556655554
No 3
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.01 E-value=43 Score=19.13 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCccCCCC
Q 044503 75 NSVPCNRRGASYYNCNG 91 (113)
Q Consensus 75 ~~vpC~~~g~sY~nC~~ 91 (113)
.++.|.+.|.+...|..
T Consensus 17 ~R~dCg~~git~~~C~~ 33 (59)
T d1e9ta_ 17 DRVDCGYPHVTPKECNN 33 (59)
T ss_dssp TCCCCCCSSCCTTTTTT
T ss_pred ccccCCCCCCCHHHHhh
Confidence 45566655554445544
No 4
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=17.29 E-value=24 Score=17.47 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCC
Q 044503 90 NGGGPTNPYRRGC 102 (113)
Q Consensus 90 ~~~~~aNPYtRGC 102 (113)
.|.++.-||+..|
T Consensus 2 ipsgqpcpynenc 14 (26)
T d1hvwa_ 2 IPSGQPCPYNENC 14 (26)
T ss_dssp BCTTSBCSSTTSB
T ss_pred CCCCCcCCCCccc
Confidence 3444445666444
No 5
>d1ce3a_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=9.87 E-value=1.4e+02 Score=16.95 Aligned_cols=28 Identities=29% Similarity=0.479 Sum_probs=16.3
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCCCCCc
Q 044503 74 GNSVPCNRRGASYYNCNGGGPTNPYRRGCT 103 (113)
Q Consensus 74 ~~~vpC~~~g~sY~nC~~~~~aNPYtRGCs 103 (113)
+...-|+++-+ |.-|+. -...++.+.|+
T Consensus 3 aC~~~CDprIa-y~iCPr-Se~k~~~~iCt 30 (54)
T d1ce3a_ 3 ACTLNCDPRIA-YGVCPR-SEEKKNDRICT 30 (54)
T ss_dssp CCCSSCCTTCC-EEECSS-CCCCSCCCCSC
T ss_pred cCccccCCcee-eeECCC-ccccccCCccc
Confidence 33445776654 667765 34455667764
No 6
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.25 E-value=47 Score=19.06 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=7.9
Q ss_pred CCCCCCCCcc
Q 044503 95 TNPYRRGCTA 104 (113)
Q Consensus 95 aNPYtRGCs~ 104 (113)
.+||+||+-.
T Consensus 101 ~dp~~~GsYs 110 (112)
T d2v5za2 101 EEQYSGGCYT 110 (112)
T ss_dssp GCTTTCSSSC
T ss_pred CCCccCcccc
Confidence 4799999854
No 7
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.70 E-value=61 Score=18.21 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=8.4
Q ss_pred CCCCCCCCCcc
Q 044503 94 PTNPYRRGCTA 104 (113)
Q Consensus 94 ~aNPYtRGCs~ 104 (113)
..+||+||+-.
T Consensus 98 ~~dp~~~GsYS 108 (109)
T d2dw4a3 98 RADPWARGSYS 108 (109)
T ss_dssp TTCTTTSSSCE
T ss_pred CCCCccCEecC
Confidence 45899999843
No 8
>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69 E-value=54 Score=17.25 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=10.0
Q ss_pred CCccc-eecccCcccc
Q 044503 36 GRLTN-IGRIEDDTEV 50 (113)
Q Consensus 36 ~~C~g-vec~~~eeE~ 50 (113)
..|+| .+|.+.++|.
T Consensus 22 ~~CDg~~DC~DgsDE~ 37 (42)
T d1cr8a_ 22 WRCDGDTDCMDSSDEK 37 (42)
T ss_dssp GSSSSSCCSSSSTTTT
T ss_pred hcCCCcCcCCCcchhc
Confidence 57888 4887555553
No 9
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.68 E-value=55 Score=17.50 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=9.3
Q ss_pred CCccce-ecccCccc
Q 044503 36 GRLTNI-GRIEDDTE 49 (113)
Q Consensus 36 ~~C~gv-ec~~~eeE 49 (113)
..|+|+ +|.+.++|
T Consensus 23 ~~CDg~~DC~DgsDE 37 (45)
T d1d2la_ 23 WKCDGDNDCLDNSDE 37 (45)
T ss_dssp GTTTSSCTTTTCSTT
T ss_pred hhCcCcCcCCCCCCC
Confidence 578884 88754444
No 10
>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}
Probab=7.46 E-value=68 Score=16.71 Aligned_cols=14 Identities=7% Similarity=-0.185 Sum_probs=0.0
Q ss_pred Cccce-ecccCcccc
Q 044503 37 RLTNI-GRIEDDTEV 50 (113)
Q Consensus 37 ~C~gv-ec~~~eeE~ 50 (113)
.|+|+ +|.+.++|.
T Consensus 25 ~CDg~~DC~DgsDE~ 39 (42)
T d1k7ba_ 25 LCDGHPDCDDGRDEW 39 (42)
T ss_dssp SSCSSCCSSSSTTTG
T ss_pred cCCCcCcCcCChhhh
Done!