Your job contains 1 sequence.
>044504
MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT
DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS
MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK
KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE
LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA
EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044504
(525 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 2504 3.3e-260 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 1729 4.5e-178 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 1728 5.7e-178 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 1721 3.1e-177 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 1721 3.1e-177 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 1718 6.5e-177 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 1718 6.5e-177 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 1715 1.4e-176 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 1708 7.5e-176 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 1707 9.6e-176 1
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 1636 3.2e-168 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 1627 2.9e-167 1
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 1612 1.1e-165 1
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 1577 5.7e-162 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 1492 5.8e-153 1
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 1337 1.5e-136 1
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 1245 1.1e-133 2
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 1245 1.1e-133 2
GENEDB_PFALCIPARUM|PF14_0364 - symbol:PF14_0364 "cleavage... 812 1.2e-114 3
UNIPROTKB|Q8IL83 - symbol:PF14_0364 "Cleavage and polyade... 812 1.2e-114 3
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 839 6.3e-110 2
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 883 2.0e-88 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 882 2.5e-88 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 861 4.3e-86 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 860 5.4e-86 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 860 5.4e-86 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 858 8.9e-86 1
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 847 1.3e-84 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 847 1.3e-84 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 846 1.7e-84 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 844 2.7e-84 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 840 7.2e-84 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 806 2.9e-80 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 803 6.0e-80 1
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 801 9.7e-80 1
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 758 3.5e-75 1
GENEDB_PFALCIPARUM|PFC0825c - symbol:PFC0825c "cleavage a... 537 2.6e-62 3
UNIPROTKB|O77371 - symbol:PFC0825c "Cleavage and polyaden... 537 2.6e-62 3
UNIPROTKB|C9JZH6 - symbol:CPSF3 "Cleavage and polyadenyla... 525 1.7e-50 1
UNIPROTKB|C9J979 - symbol:CPSF3L "Integrator complex subu... 287 5.3e-48 2
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 475 3.4e-45 1
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 408 5.2e-41 2
UNIPROTKB|E9PI75 - symbol:CPSF3L "Integrator complex subu... 392 2.1e-36 1
UNIPROTKB|E9PIG1 - symbol:CPSF3L "Integrator complex subu... 388 5.7e-36 1
TIGR_CMR|CHY_2049 - symbol:CHY_2049 "metallo-beta-lactama... 293 1.2e-35 2
TIGR_CMR|CPS_2623 - symbol:CPS_2623 "metallo-beta-lactama... 377 8.3e-35 1
UNIPROTKB|Q9KV92 - symbol:VC_0264 "Putative uncharacteriz... 373 2.2e-34 1
TIGR_CMR|VC_0264 - symbol:VC_0264 "conserved hypothetical... 373 2.2e-34 1
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 372 3.9e-34 2
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 372 3.9e-34 2
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 342 4.2e-31 2
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 341 1.0e-30 1
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 340 1.5e-30 2
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 347 2.0e-30 2
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 344 3.2e-30 2
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 342 7.1e-30 2
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 342 7.1e-30 2
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 342 7.1e-30 2
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 337 3.1e-29 2
TIGR_CMR|DET_1061 - symbol:DET_1061 "metallo-beta-lactama... 264 3.4e-29 2
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 333 3.7e-29 2
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 336 4.0e-29 2
UNIPROTKB|Q8EJC6 - symbol:SO_0541 "RNA-metabolizing metal... 236 7.4e-28 2
TIGR_CMR|SO_0541 - symbol:SO_0541 "metallo-beta-lactamase... 236 7.4e-28 2
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 279 2.6e-22 2
UNIPROTKB|E9PIL7 - symbol:CPSF3L "Integrator complex subu... 258 1.8e-21 1
UNIPROTKB|Q81SC3 - symbol:BA_1737 "Metallo-beta-lactamase... 272 2.6e-21 1
TIGR_CMR|BA_1737 - symbol:BA_1737 "metallo-beta-lactamase... 272 2.6e-21 1
UNIPROTKB|Q74C32 - symbol:GSU1843 "RNA exonuclease, beta-... 154 7.9e-19 4
TIGR_CMR|GSU_1843 - symbol:GSU_1843 "metallo-beta-lactama... 154 7.9e-19 4
UNIPROTKB|E9PQF0 - symbol:CPSF3L "Integrator complex subu... 229 2.6e-18 1
DICTYBASE|DDB_G0282473 - symbol:ints9 "integrator complex... 190 2.6e-18 3
UNIPROTKB|Q0C1L6 - symbol:HNE_1669 "Putative uncharacteri... 173 4.3e-13 3
UNIPROTKB|H0YBH8 - symbol:INTS9 "Integrator complex subun... 154 1.0e-10 2
UNIPROTKB|F6XI08 - symbol:INTS9 "Uncharacterized protein"... 173 7.3e-10 2
CGD|CAL0004705 - symbol:orf19.325 species:5476 "Candida a... 187 7.8e-10 2
UNIPROTKB|Q5AEE3 - symbol:CFT2 "Putative uncharacterized ... 187 7.8e-10 2
RGD|1311539 - symbol:Ints9 "integrator complex subunit 9"... 170 1.6e-09 2
UNIPROTKB|F1MMA6 - symbol:INTS9 "Integrator complex subun... 169 2.0e-09 2
UNIPROTKB|Q2KJA6 - symbol:INTS9 "Integrator complex subun... 169 2.0e-09 2
MGI|MGI:1098533 - symbol:Ints9 "integrator complex subuni... 167 3.3e-09 2
UNIPROTKB|Q9NV88 - symbol:INTS9 "Integrator complex subun... 166 4.2e-09 2
UNIPROTKB|F1RJQ5 - symbol:INTS9 "Uncharacterized protein"... 167 4.6e-09 1
UNIPROTKB|H7BYQ6 - symbol:INTS9 "Integrator complex subun... 166 5.5e-09 1
UNIPROTKB|G3XAN1 - symbol:INTS9 "Integrator complex subun... 162 5.8e-09 2
UNIPROTKB|Q5ZKK2 - symbol:INTS9 "Integrator complex subun... 164 7.0e-09 2
ZFIN|ZDB-GENE-061013-129 - symbol:ints9 "integrator compl... 157 4.1e-08 2
WB|WBGene00017608 - symbol:F19F10.12 species:6239 "Caenor... 128 9.3e-08 2
UNIPROTKB|E5RG70 - symbol:INTS9 "Integrator complex subun... 140 1.8e-07 2
UNIPROTKB|E5RK47 - symbol:INTS9 "Integrator complex subun... 112 4.8e-06 2
FB|FBgn0036570 - symbol:IntS9 "Integrator 9" species:7227... 138 8.3e-06 1
UNIPROTKB|Q87XP2 - symbol:PSPTO_4134 "Uncharacterized pro... 129 1.2e-05 2
TIGR_CMR|NSE_0829 - symbol:NSE_0829 "metallo-beta-lactama... 124 5.7e-05 2
TIGR_CMR|CHY_1157 - symbol:CHY_1157 "metallo-beta-lactama... 114 0.00014 2
UNIPROTKB|G4N6C6 - symbol:MGG_06570 "Uncharacterized prot... 107 0.00061 3
UNIPROTKB|E2QVB2 - symbol:INTS9 "Uncharacterized protein"... 118 0.00063 1
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 2504 (886.5 bits), Expect = 3.3e-260, P = 3.3e-260
Identities = 469/517 (90%), Positives = 503/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL+TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLAEKTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
Identities = 315/510 (61%), Positives = 397/510 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ +SGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
VK+ F Y I++P DL ++ L+ + +TQ +
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVTQTL 515
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
Identities = 321/528 (60%), Positives = 405/528 (76%)
Query: 2 ASVGQPPSLKRRDAPVS----REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP 57
A+ PP L+R+ + +S E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP
Sbjct: 20 AACSSPP-LRRQISEMSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHP 78
Query: 58 AYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL 117
GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+
Sbjct: 79 GLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW 138
Query: 118 LLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177
LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMF
Sbjct: 139 LLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMF 198
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
M++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF +
Sbjct: 199 MIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNT 258
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY
Sbjct: 259 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 318
Query: 298 ILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC
Sbjct: 319 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 378
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 417
+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F
Sbjct: 379 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 438
Query: 418 LKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAK 474
++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK
Sbjct: 439 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 498
Query: 475 TIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
+G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 499 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 546
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 1721 (610.9 bits), Expect = 3.1e-177, P = 3.1e-177
Identities = 315/508 (62%), Positives = 395/508 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 1721 (610.9 bits), Expect = 3.1e-177, P = 3.1e-177
Identities = 315/508 (62%), Positives = 395/508 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 1718 (609.8 bits), Expect = 6.5e-177, P = 6.5e-177
Identities = 314/508 (61%), Positives = 395/508 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 1718 (609.8 bits), Expect = 6.5e-177, P = 6.5e-177
Identities = 314/508 (61%), Positives = 395/508 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 1715 (608.8 bits), Expect = 1.4e-176, P = 1.4e-176
Identities = 313/508 (61%), Positives = 395/508 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAG+++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 1708 (606.3 bits), Expect = 7.5e-176, P = 7.5e-176
Identities = 315/511 (61%), Positives = 395/511 (77%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK---VSVEDML 134
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKV K +S +DML
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVRKCSNISADDML 125
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR
Sbjct: 126 YTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSR 185
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FA
Sbjct: 186 QEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFA 245
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NP
Sbjct: 246 LGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNP 305
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGT
Sbjct: 306 FVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGT 365
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +
Sbjct: 366 LAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQN 425
Query: 435 EMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VS
Sbjct: 426 EMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVS 485
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
GILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 GILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 516
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 1707 (606.0 bits), Expect = 9.6e-176, P = 9.6e-176
Identities = 314/516 (60%), Positives = 396/516 (76%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D PV + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
+DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 ADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PDI I ESTYG +H+ R RE RF + +H +++ GR L
Sbjct: 185 GDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 245 IPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY
Sbjct: 305 NINNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILV
Sbjct: 365 CVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILV 424
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 425 HGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCSQ 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
G+ VSGILVKK F+Y I++P DL ++ L+ + + Q
Sbjct: 485 GQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQ 520
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
Identities = 300/507 (59%), Positives = 381/507 (75%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAK +
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAV 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K EVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 1627 (577.8 bits), Expect = 2.9e-167, P = 2.9e-167
Identities = 300/519 (57%), Positives = 395/519 (76%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L ITP+G+G+EVGRSCV + YKGK ++FDCG+HPAYSG+ +LP+FD
Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFD 81
Query: 70 EIDPSA--IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
I+ ID+LL++HFHLDHAA++PYF+ KT FKGRVFMTH TKAIY +LL+DYVKVS
Sbjct: 82 SIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSN 141
Query: 128 VSVED-MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ +D MLFD+ D++RS++KIE + + Q VE NGIK C+ AGHVLGAAMFM++IAGV++
Sbjct: 142 ITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKI 201
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AE P D+ IIESTYGVQ+H+PR REKRFT +H + + G
Sbjct: 202 LYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNG 261
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+ LIP FALGRAQELLLILDEYW +P+ H++PIYYAS LAKKCM VY+TYI MN+R+R
Sbjct: 262 KCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVR 321
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
QF SNPF+FKHI + I+ F D GP V MASPG LQSGLSRQLF+ WCSDK+N VI
Sbjct: 322 AQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVI 381
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
PGY VEGTLAK I+SEP E+T ++ + PLN+ V Y+SFSAH+D+ QTS F++E+ PP++
Sbjct: 382 PGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHV 441
Query: 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
+LVHG+++EM RL+ L+ + N ++TPKN SV + F EK+AKT+G + P+
Sbjct: 442 VLVHGDANEMSRLRQSLVAKFKTIN--VLTPKNAMSVALEFRPEKVAKTLGSIITNPPKQ 499
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ + GILV K FT+ I++ D+H ++ L T I Q++T
Sbjct: 500 NDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLT 538
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 1612 (572.5 bits), Expect = 1.1e-165, P = 1.1e-165
Identities = 296/476 (62%), Positives = 370/476 (77%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG 169
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AG
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 120
Query: 170 HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNI 229
HVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R
Sbjct: 121 HVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE 180
Query: 230 REKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKK 289
RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKK
Sbjct: 181 REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKK 240
Query: 290 CMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLS 349
CMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLS
Sbjct: 241 CMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLS 300
Query: 350 RQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHA 409
R+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH
Sbjct: 301 RELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT 360
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMY 466
DY QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V +
Sbjct: 361 DYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 420
Query: 467 FNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
F EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 421 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 476
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 1577 (560.2 bits), Expect = 5.7e-162, P = 5.7e-162
Identities = 285/508 (56%), Positives = 375/508 (73%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L TPLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID+LLI
Sbjct: 9 DSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
THFHLDH +LP+ L+KT F+G+ FMTHATKAIY++LL DYV++SK D L+ E D
Sbjct: 69 THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDD 128
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ +SM KIE +DF + EVNGI+FW Y AGHVLGA FM++IAGVRVLYTGD+S EDRH
Sbjct: 129 LEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRH 188
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P +P + I ESTYG Q H+ R +REKRFT ++H +++GGR LIPAFA+G AQ
Sbjct: 189 LCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIPAFAIGPAQ 248
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
EL+LILDEYW +H E H+IP+YYAS LAKKCM+VYQT++ MN RI+ Q A NPF FKH
Sbjct: 249 ELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAVKNPFIFKH 308
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+S L +D F D GP VV+A+PG LQSG SR+LF+ WC D KN C+I GY VEGTLAK I
Sbjct: 309 VSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCVEGTLAKHI 368
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+ ++G P+ MQV Y+SFSAH DY QTS F+K L PP+++LVHGE HEM RL
Sbjct: 369 LSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSNFVKALKPPHLVLVHGELHEMSRL 428
Query: 440 KTKLMTELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
K+ + + D N ++ P+N + +++ F EK AK IG+LA++ PE ET+SG+LVK
Sbjct: 429 KSGIERQFQDDNIPIEVHNPRNTERLQLQFRGEKTAKVIGKLAQRVPENNETISGVLVKN 488
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQRIT 525
F+Y IM P++L ++ L +++ QR++
Sbjct: 489 NFSYSIMVPEELGSYTSLRISSLEQRMS 516
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 276/512 (53%), Positives = 371/512 (72%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAPV D L LGAGNEVGRSC + YKGKT++ D G+HPAY+G++ALP+FDE D
Sbjct: 10 DAPVD-PSDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDL 68
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S +DVLLI+HFHLDH ASLPY ++KT F+GRVFMTH TKA+ K LL+DYVKVS V +ED
Sbjct: 69 STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQ 128
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L+DE+D+ + D+IE +D+H T+EV GIKF Y AGHVLGA M+ V++AGV +L+TGDYS
Sbjct: 129 LYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYS 188
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
REEDRHL AE+P PD+ I ESTYG HQPR +E R ++IHSTI GGRVL+P F
Sbjct: 189 REEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVF 248
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQELLLILDEYW+NH + ++PIYYAS LA+KCMA++QTY+ MN+ IR FA N
Sbjct: 249 ALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERN 308
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF F+ + L +++ F D+GPSV++ASPG LQ+G+SR L + W D +N ++ GY VEG
Sbjct: 309 PFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEG 368
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+AK I +EP E+ ++G P M V +SF+AH DY Q S F+ + +IILVHGE
Sbjct: 369 TMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQ 428
Query: 434 HEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
MGRLK+ L ++ + + K+ TP+NC + + F E++ + +G++A P+ G+ +S
Sbjct: 429 TNMGRLKSALASKFHNRKVDVKVYTPRNCVPLYLPFKGERLVRALGKVAVHKPKEGDIMS 488
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
GIL++K Y++M+ +DL FS L+T +TQ+
Sbjct: 489 GILIQKDANYKLMSAEDLRDFSDLTTTVLTQK 520
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 1337 (475.7 bits), Expect = 1.5e-136, P = 1.5e-136
Identities = 254/474 (53%), Positives = 343/474 (72%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--SVEDM------LFDEQDI 140
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + S M LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPEF---HNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+ MGRLK+ L++ A D + P+NC V++ F K+AK +G + +
Sbjct: 434 NPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNE 487
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 1245 (443.3 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 241/478 (50%), Positives = 336/478 (70%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 164
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VED-------MLFDEQ 138
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 165 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 224
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDYSREE+R
Sbjct: 225 DIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENR 284
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +PR E++ T IH+TI++GGRVL+P FALG A
Sbjct: 285 HLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLTTHIHATIAKGGRVLLPVFALGNA 344
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS---NPF 315
QELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR A+S NPF
Sbjct: 345 QELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSASSEKSNPF 404
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 405 DFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTM 464
Query: 376 AKTIISEPKEV-TLMN-GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + + N +T P + + ISF+AH D+ Q S F++++ P +ILVHG+S
Sbjct: 465 AKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKVILVHGDS 524
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
MGRLK+ L+++ A D K+ PKNC+ + + F K+AK +G LAE+ +V
Sbjct: 525 VPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIGFKGLKIAKVLGSLAEEQLQV 582
Score = 86 (35.3 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
+ G+ VSG+LV K F ++ DLH F+QLST+ + ++
Sbjct: 633 KTGQVVSGVLVSKDFNLNLLQLQDLHEFTQLSTSIVKSKM 672
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 1245 (443.3 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 241/478 (50%), Positives = 336/478 (70%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 164
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VED-------MLFDEQ 138
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 165 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 224
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDYSREE+R
Sbjct: 225 DIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENR 284
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +PR E++ T IH+TI++GGRVL+P FALG A
Sbjct: 285 HLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLTTHIHATIAKGGRVLLPVFALGNA 344
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS---NPF 315
QELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR A+S NPF
Sbjct: 345 QELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSASSEKSNPF 404
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 405 DFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTM 464
Query: 376 AKTIISEPKEV-TLMN-GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + + N +T P + + ISF+AH D+ Q S F++++ P +ILVHG+S
Sbjct: 465 AKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKVILVHGDS 524
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
MGRLK+ L+++ A D K+ PKNC+ + + F K+AK +G LAE+ +V
Sbjct: 525 VPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIGFKGLKIAKVLGSLAEEQLQV 582
Score = 86 (35.3 bits), Expect = 1.1e-133, Sum P(2) = 1.1e-133
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
+ G+ VSG+LV K F ++ DLH F+QLST+ + ++
Sbjct: 633 KTGQVVSGVLVSKDFNLNLLQLQDLHEFTQLSTSIVKSKM 672
>GENEDB_PFALCIPARUM|PF14_0364 [details] [associations]
symbol:PF14_0364 "cleavage and polyadenylation
specifity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014187 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 RefSeq:XP_001348538.1 ProteinModelPortal:Q8IL83
PRIDE:Q8IL83 EnsemblProtists:PF14_0364:mRNA GeneID:811946
KEGG:pfa:PF14_0364 EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH
ProtClustDB:CLSZ2457730 Uniprot:Q8IL83
Length = 876
Score = 812 (290.9 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 163/388 (42%), Positives = 245/388 (63%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+DE DI+++MD IE L+FHQ E +KF Y AGHV+GA MF+V+I +R LYTGD
Sbjct: 165 NVLYDENDIDKTMDLIETLNFHQNFEFPNVKFTAYRAGHVIGACMFLVEINNIRFLYTGD 224
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE RF +++ S I+ G+VL+P
Sbjct: 225 YSREIDRHIPIAEIPNIDVHVLICEGTYGIKVHDDRKKREIRFLNILTSMINNKGKVLLP 284
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-A 310
FALGRAQELLLIL+E+W + NIPI+Y S +A K + +Y+T+I E ++
Sbjct: 285 VFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYETFINLCGEFVKKVVNE 344
Query: 311 NSNPFKFKHISPLNSIDDFS-----DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK++ S++ S D P V+MASPG LQ+G+S+ +F+I SDKK+ +
Sbjct: 345 GKNPFNFKYVKYAKSLESISSYLYQDNNPCVIMASPGMLQNGISKNIFNIIASDKKSGVI 404
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY V+GTLA + +EP+ VT+ N + ISFSAH+D+ QT TF+++L PN
Sbjct: 405 LTGYTVKGTLADELKTEPEFVTI-NDKVVKRKCRFEQISFSAHSDFNQTKTFIEKLKCPN 463
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
++LVHG+ +E+ RLK KL+ E + + TP+ Q + +F ++G+L+E +
Sbjct: 464 VVLVHGDKNELNRLKNKLIEEKQYLS--VFTPELLQKLSFHFEQNDSLISLGKLSEHIKK 521
Query: 486 VGETVS--GILVKKGFTYQIMAPDDLHI 511
+ + + G+ +KK + M +D HI
Sbjct: 522 INKKIKLEGLKMKK----EKMIANDEHI 545
Score = 301 (111.0 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 53/102 (51%), Positives = 71/102 (69%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + +++ DCGIHPA+ G+ LP +D D S +D+ LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
+DH+ +LPY + KT FKGR+FMT ATK+I LL DY ++ K
Sbjct: 66 MDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARIEK 107
Score = 52 (23.4 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 479 LAEKTPEVGETVSGILVKKGFTYQIMA-PDDLHIFSQLSTANITQRI 524
++ + V + GI++ + I+ P+D++ ++ L TA I Q I
Sbjct: 583 ISNEKHNVNNQIEGIIITEPQNVPILIYPNDIYEYTNLKTAMIDQTI 629
Score = 37 (18.1 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 116 KLLLTD-YVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN 159
K++ D ++ V K + D+ DE+++ S K +D H +N
Sbjct: 537 KMIANDEHISV-KNEMGDINNDEENLQISDKKKNKVDEHDKHNIN 580
>UNIPROTKB|Q8IL83 [details] [associations]
symbol:PF14_0364 "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014187
GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 RefSeq:XP_001348538.1
ProteinModelPortal:Q8IL83 PRIDE:Q8IL83
EnsemblProtists:PF14_0364:mRNA GeneID:811946 KEGG:pfa:PF14_0364
EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH ProtClustDB:CLSZ2457730
Uniprot:Q8IL83
Length = 876
Score = 812 (290.9 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 163/388 (42%), Positives = 245/388 (63%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+DE DI+++MD IE L+FHQ E +KF Y AGHV+GA MF+V+I +R LYTGD
Sbjct: 165 NVLYDENDIDKTMDLIETLNFHQNFEFPNVKFTAYRAGHVIGACMFLVEINNIRFLYTGD 224
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE RF +++ S I+ G+VL+P
Sbjct: 225 YSREIDRHIPIAEIPNIDVHVLICEGTYGIKVHDDRKKREIRFLNILTSMINNKGKVLLP 284
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-A 310
FALGRAQELLLIL+E+W + NIPI+Y S +A K + +Y+T+I E ++
Sbjct: 285 VFALGRAQELLLILEEHWDKNKHLQNIPIFYISSMATKSLCIYETFINLCGEFVKKVVNE 344
Query: 311 NSNPFKFKHISPLNSIDDFS-----DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK++ S++ S D P V+MASPG LQ+G+S+ +F+I SDKK+ +
Sbjct: 345 GKNPFNFKYVKYAKSLESISSYLYQDNNPCVIMASPGMLQNGISKNIFNIIASDKKSGVI 404
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY V+GTLA + +EP+ VT+ N + ISFSAH+D+ QT TF+++L PN
Sbjct: 405 LTGYTVKGTLADELKTEPEFVTI-NDKVVKRKCRFEQISFSAHSDFNQTKTFIEKLKCPN 463
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
++LVHG+ +E+ RLK KL+ E + + TP+ Q + +F ++G+L+E +
Sbjct: 464 VVLVHGDKNELNRLKNKLIEEKQYLS--VFTPELLQKLSFHFEQNDSLISLGKLSEHIKK 521
Query: 486 VGETVS--GILVKKGFTYQIMAPDDLHI 511
+ + + G+ +KK + M +D HI
Sbjct: 522 INKKIKLEGLKMKK----EKMIANDEHI 545
Score = 301 (111.0 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 53/102 (51%), Positives = 71/102 (69%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + +++ DCGIHPA+ G+ LP +D D S +D+ LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
+DH+ +LPY + KT FKGR+FMT ATK+I LL DY ++ K
Sbjct: 66 MDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARIEK 107
Score = 52 (23.4 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 479 LAEKTPEVGETVSGILVKKGFTYQIMA-PDDLHIFSQLSTANITQRI 524
++ + V + GI++ + I+ P+D++ ++ L TA I Q I
Sbjct: 583 ISNEKHNVNNQIEGIIITEPQNVPILIYPNDIYEYTNLKTAMIDQTI 629
Score = 37 (18.1 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 116 KLLLTD-YVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN 159
K++ D ++ V K + D+ DE+++ S K +D H +N
Sbjct: 537 KMIANDEHISV-KNEMGDINNDEENLQISDKKKNKVDEHDKHNIN 580
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 839 (300.4 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 164/301 (54%), Positives = 209/301 (69%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-SVED 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+V+ S D
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSD 133
Query: 133 M---LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ Y AGHVLGAAMF++ IAG+ +L+T
Sbjct: 134 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILFT 193
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL A +P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 194 GDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 253
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 254 LMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 313
Query: 309 F 309
F
Sbjct: 314 F 314
Score = 635 (228.6 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
Identities = 126/268 (47%), Positives = 176/268 (65%)
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L+ E D ++ IE +DF+ T +N I+ Y AGHVLGAAMF++ IAG+ +L+TGDYS
Sbjct: 138 LYTEHDHLSTLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILFTGDYS 197
Query: 194 REEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
REEDRHL A +P+ D+ I EST+G+ + PR RE I +++GGRVL+P
Sbjct: 198 REEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRVLMPV 257
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--- 309
FALGRAQELLLIL+EYW HPE IPIYY A++CM VYQTYI +MN+ I+ F
Sbjct: 258 FALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQR 317
Query: 310 -----------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCS 358
++ P+ FK++ L S++ F DVG V++ASPG LQ+G SR+L + W
Sbjct: 318 MAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAP 377
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEV 386
+++N V+ GY VEGT+AK +++EP ++
Sbjct: 378 NERNGVVMTGYSVEGTMAKQLLNEPDQI 405
Score = 267 (99.0 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
Identities = 64/155 (41%), Positives = 93/155 (60%)
Query: 387 TLMNG------LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
T MNG + P V ISF+AH D + F++E+ P +ILVHGE H+M RLK
Sbjct: 419 TRMNGNDEEQKIMIPRRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLK 478
Query: 441 TKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT-P---EVGE--TVSG 492
+KL++ A+ K+ TP NC+ V + F +K+AK +G+LA+ T P E G+ ++G
Sbjct: 479 SKLLSLNAEKTVKVKVYTPANCEEVRIPFRKDKIAKVVGKLAQTTLPTDNEDGDGPLMAG 538
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
+LV+ GF +MAPDDL ++ L+T IT Q IT
Sbjct: 539 VLVQNGFDLSLMAPDDLREYAGLATTTITCKQHIT 573
Score = 49 (22.3 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 8 PSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILF 51
P ++ D + + + ITP AG+ +G + +S G ILF
Sbjct: 149 PLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILF 192
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 194/521 (37%), Positives = 297/521 (57%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN-SEKMAKTIGRLAEKT-----PEV 486
+ +M LK K+ E + P N ++ ++ N S + ++G L +T P+
Sbjct: 417 AKKMEFLKQKIEQEF---HVNCYMPANGETTSIFTNPSIPVDISLGLLKRETAIGLLPDA 473
Query: 487 GET--VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ + G L+ K ++++++P+ +L A R T
Sbjct: 474 KKPKLMHGTLIMKDNSFRLVSPEQA--LKELGLAEHQLRFT 512
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 194/521 (37%), Positives = 297/521 (57%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN-SEKMAKTIGRLAEKT-----PEV 486
+ +M LK K+ E + P N ++ ++ N S + ++G L +T P+
Sbjct: 417 AKKMEFLKQKIEQEF---HVNCYMPANGETTTIFTNPSIPVDISLGLLKRETAIGLLPDA 473
Query: 487 GET--VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ + G L+ K ++++++P+ +L A R T
Sbjct: 474 KKPKLMHGTLIMKDNSFRLVSPEQA--LKELGLAEHQLRFT 512
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 189/519 (36%), Positives = 291/519 (56%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTPEV 486
+M L+ K+ E C N + +T S+ + + + + + G L E K P +
Sbjct: 419 KMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGLLPEAKKPRL 478
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ G L+ K +++++ + +L A R T
Sbjct: 479 ---LHGTLIMKDSNFRLVSSEQA--LKELGLAEHQLRFT 512
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 189/519 (36%), Positives = 293/519 (56%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTPEV 486
+M LK K+ EL +C N + +T S+ + + + + + G L E K P +
Sbjct: 419 KMEFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRL 478
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ G L+ K +++++ + +L A R T
Sbjct: 479 ---LHGTLIMKDSNFRLVSSEQA--LKELGLAEHQLRFT 512
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
Identities = 189/519 (36%), Positives = 291/519 (56%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTPEV 486
+M L+ K+ E C N + +T S+ + + + + + G L E K P +
Sbjct: 419 KMEFLRQKIEQEFRVSCYMPANGETVTLPTSPSIPVGISLGLLKREMVQGLLPEAKKPRL 478
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ G L+ K +++++ + +L A R T
Sbjct: 479 ---LHGTLIMKDNNFRLVSSEQA--LKELGLAEHQLRFT 512
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
Identities = 189/518 (36%), Positives = 289/518 (55%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKGEANFFTS 122
Query: 138 QDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 182
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FALG
Sbjct: 183 DRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 242
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F+
Sbjct: 243 RAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFE 300
Query: 317 FKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+
Sbjct: 301 FKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTV 358
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+ +
Sbjct: 359 GHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAKK 418
Query: 436 MGRLKTKLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTPEVG 487
M LK K+ E +C N + +T S+ + + + + + G L + K P +
Sbjct: 419 MEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPDAKKPRL- 477
Query: 488 ETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ G L+ K +++++ + +L A R T
Sbjct: 478 --LHGTLIMKDSNFRLVSSEQA--LKELGLAEHQLRFT 511
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 182/443 (41%), Positives = 256/443 (57%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT+
Sbjct: 302 FKHIKPFDKAY-IDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 NKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAGKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKN 459
L++K+ E N + P N
Sbjct: 421 KFLRSKIKDEF---NLETYMPAN 440
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 186/516 (36%), Positives = 284/516 (55%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKAVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ L + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLELEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELA-DC----NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
+M LK K+ E C N + +T S+ + + + + + + +
Sbjct: 419 KMEFLKQKIEQEFRLSCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPDAKKARL 478
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ G L+ K T+++++ + +L A R T
Sbjct: 479 LHGTLIMKDSTFRLVSSEQA--LKELGLAEHQLRFT 512
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 188/521 (36%), Positives = 293/521 (56%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H + +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGE 416
Query: 433 SHEMGRLKTKLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTP 484
+ +M LK K+ E +C N + +T S+ + + + + + G L + K P
Sbjct: 417 AKKMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPDVKKP 476
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ + G L+ K +++++ + +L A R T
Sbjct: 477 RL---LHGTLIMKDSNFRLVSSEQA--LKELGLAEHQLRFT 512
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 844 (302.2 bits), Expect = 2.7e-84, P = 2.7e-84
Identities = 188/519 (36%), Positives = 288/519 (55%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTPEV 486
+M LK K+ E +C N + +T S+ + + + + + G L + K P +
Sbjct: 419 KMEFLKQKIEQEFRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPDAKKPRL 478
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ G L+ K +++++ + +L A R T
Sbjct: 479 ---LHGTLIMKDSNFRLVSSEQA--LKELGLAEHQLRFT 512
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
Identities = 186/512 (36%), Positives = 287/512 (56%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 196 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 255
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 256 ILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 313
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 314 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 371
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 372 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 431
Query: 442 KLMTEL-ADC----NTKIITPKNCQSVEMYFNSEKMAKTI--GRLAE-KTPEVGETVSGI 493
K+ EL +C N + +T S+ + + + + + G L E K P + + G
Sbjct: 432 KIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRL---LHGT 488
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
L+ K +++++ + +L A R T
Sbjct: 489 LIMKDSNFRLVSSEQA--LKELGLAEHQLRFT 518
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 169/433 (39%), Positives = 245/433 (56%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I PLGAG +VGRSC+ ++ GK I+ DCG+H Y P F I +D
Sbjct: 7 EIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 126
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
DI M K+ H+ + V N + + AGHVLGAAMF + + VLYTGDY+
Sbjct: 127 SDDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMT 186
Query: 196 EDRHLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA LP P + I ESTY + + RE+ F +H + +GG+V+IP FA
Sbjct: 187 PDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHECVMKGGKVIIPVFA 246
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L+ YW N+PIY++ LA++ Y+ +I NE I+ F N
Sbjct: 247 LGRAQELCILLESYWERMAL--NVPIYFSQGLAERANQYYRLFISWTNENIKKTFVERNM 304
Query: 315 FKFKHISPLNS-IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F+FKHI P+ +D GP V+ ++PG L G S ++F WCSD N ++PGY V G
Sbjct: 305 FEFKHIKPMEKGCED--QPGPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGYCVAG 362
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ +I+ K++ + + + + V Y+SFSAHAD +++ P +++ VHGE+
Sbjct: 363 TVGARVINGEKKIEIDQKMHE-IRLGVEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEA 421
Query: 434 HEMGRLKTKLMTE 446
+M LK K+ E
Sbjct: 422 SKMEFLKGKVEKE 434
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 175/445 (39%), Positives = 251/445 (56%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSCV ++ K I+FDCG+H + P F I + ID ++
Sbjct: 5 VVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDCVI 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LP+F E + G ++MT TKAI +LL DY K++ + E F Q
Sbjct: 65 ITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTAQM 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ ++ HQT++V+ + Y AGHVLGAAMF + V+YTGDY+ DR
Sbjct: 125 IKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL +A + Q PD+ I E+TY + + RE+ F IH + +GG+VLIP FALGR
Sbjct: 185 HLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALGRV 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL +++D YW H IPIY+++ LA+K Y+ +I N++I+ F N F FK
Sbjct: 245 QELCILIDSYWEQMNLGH-IPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMFDFK 303
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI P S D G V+ A+PG L +G S ++F W ++ N +IPGY V GT+
Sbjct: 304 HIKPFQS--HLVDAPGAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVGN 361
Query: 378 TII---------SEPKE--VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
++ S+P+ V + T + ++H +SFSAHAD +K P N+
Sbjct: 362 KLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFSAHADAKGILQLIKMSNPRNV 421
Query: 427 ILVHGESHEMGRLKTKLMTELA-DC 450
ILVHGE +MG L K++ E+ +C
Sbjct: 422 ILVHGEKEKMGFLSQKIIKEMGVNC 446
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 190/506 (37%), Positives = 283/506 (55%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I + +D ++
Sbjct: 6 VTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAM----FMVDIAGVRVLYTGDYSR 194
I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM F V + V V YT
Sbjct: 126 IKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQSRFRV-VYTVSVSYTYSNLM 184
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
LRAA + + PDI I ESTY + + RE+ F +H T+ +GG+VLIP FA
Sbjct: 185 TPASDLRAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFA 244
Query: 255 LGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
LGRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F
Sbjct: 245 LGRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQR 300
Query: 313 NPFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
N F+FKHI + ++D GP VV A+PG L +G S Q+F W ++KN ++PGY V
Sbjct: 301 NMFEFKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCV 358
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+GT+ I++ K++ + T + +QV Y+SFSAHAD ++ P N++LVHG
Sbjct: 359 QGTVGHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHG 418
Query: 432 ESHEMGRLKTKLMTELA-DC-------NTKIITPKNCQSVEMYFNSEKMAKTIGR-LAE- 481
E+ +M LK K+ E + C T I+T + V++ N K +G L +
Sbjct: 419 EAKKMEFLKDKIEQEFSISCFMPANGETTTIVTNPSVP-VDISLNLLKREMALGGPLPDA 477
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPD 507
K P T+ G L+ K + ++++P+
Sbjct: 478 KKPR---TMHGTLIMKDNSLRLVSPE 500
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 164/444 (36%), Positives = 242/444 (54%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY--VKVSKVSVEDMLFDEQDIN 141
FH+DH +LPYF E + G ++M++ TKA+ L+L DY V V + E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEE-LFTTTHIA 126
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
M K+ +D QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 127 NCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHL 186
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AA++ + D+ I ESTY + + RE+ F +H ++ GG+ LIP+FALGRAQE
Sbjct: 187 GAAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQE 246
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
L ++LD+YW +PIY++S L + Y+ I ++ ++ + NPF FK++
Sbjct: 247 LCMLLDDYWERMNI--KVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKNV 304
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KTI 379
+ GP V+ A+PG L +G S ++F W N +PGY V GT+ K +
Sbjct: 305 KDFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKLM 363
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+P V L NG + +VH ++FS H D K L P N++LVHGE M L
Sbjct: 364 AGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMIL 423
Query: 440 KTKLMTELADCNTKIITPKNCQSV 463
K K+ +EL + P N ++V
Sbjct: 424 KEKITSEL---DIPCFVPANGETV 444
>GENEDB_PFALCIPARUM|PFC0825c [details] [associations]
symbol:PFC0825c "cleavage and polyadenylation
specificity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 GO:GO:0003729 GO:GO:0016787
EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 537 (194.1 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 131/402 (32%), Positives = 214/402 (53%)
Query: 50 LFDCGI--HPAYSGMAALPYFDEIDPSAIDVLLITH--------FHLDHAASLPYFLEKT 99
+ DC I H + ALP+F EI ++L+++ LD EK
Sbjct: 169 IIDCVIISHFHMDHIGALPFFTEILKYR-GIILMSYPTKALSPILLLDSCRVTDMKWEKK 227
Query: 100 TFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN 159
F+ ++ M + +LL +Y ++ + + +E +I +DK+ L ++T E+
Sbjct: 228 NFERQIKMLNEKSD--ELL--NY-NINCIKKDPWNINEDNIYNCIDKVIGLQINETFELG 282
Query: 160 GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY 219
+ Y AGHVLGA ++ +++ V+YTGDY+ D+HL +A +P +P+I I ESTY
Sbjct: 283 DMSITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIPDKHLGSANIPSLNPEIFISESTY 342
Query: 220 GVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIP 279
+ + E +++H + +GG+VLIP FA+GRAQEL ++LD+YW + H P
Sbjct: 343 ATYVRPTKKASELELCNLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKM-KIH-YP 400
Query: 280 IYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP-LNSIDDFSDVGPSVVM 338
IY+ L + Y+ Y +N + N F F +ISP LN+ ++ P V+
Sbjct: 401 IYFGCGLTENANKYYKIYSSWINSSCMSN-EKENLFDFANISPFLNNY--LNEKRPMVLF 457
Query: 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLT-APLN 397
A+PG L +GLS + F W + +N V+PGY V+GT+ +I K+++L +G T +
Sbjct: 458 ATPGMLHTGLSLKAFKAWAGNPQNLIVLPGYCVQGTVGHKLIMGEKQISL-DGTTYIKVL 516
Query: 398 MQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
++ Y+SFSAHAD +K + P N+I VHGE + M +L
Sbjct: 517 CKIIYLSFSAHADSNGIQQLIKHVSPKNVIFVHGEKNGMQKL 558
Score = 109 (43.4 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++II LGAG VGRSCV + + + ++FDCG H Y P F+
Sbjct: 8 KIIIQVLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFN 54
Score = 47 (21.6 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 425 NIILVHGESHE-MGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAK 474
N I +H H+ + +LK K+ K I N Q ++Y N K K
Sbjct: 589 NYIYIHKNIHKHILQLKKKIT------KNKHINTTNIQKTDLYINENKKKK 633
>UNIPROTKB|O77371 [details] [associations]
symbol:PFC0825c "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
InterPro:IPR001279 SMART:SM00849 Pfam:PF07521 GO:GO:0003729
GO:GO:0016787 EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 537 (194.1 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 131/402 (32%), Positives = 214/402 (53%)
Query: 50 LFDCGI--HPAYSGMAALPYFDEIDPSAIDVLLITH--------FHLDHAASLPYFLEKT 99
+ DC I H + ALP+F EI ++L+++ LD EK
Sbjct: 169 IIDCVIISHFHMDHIGALPFFTEILKYR-GIILMSYPTKALSPILLLDSCRVTDMKWEKK 227
Query: 100 TFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN 159
F+ ++ M + +LL +Y ++ + + +E +I +DK+ L ++T E+
Sbjct: 228 NFERQIKMLNEKSD--ELL--NY-NINCIKKDPWNINEDNIYNCIDKVIGLQINETFELG 282
Query: 160 GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY 219
+ Y AGHVLGA ++ +++ V+YTGDY+ D+HL +A +P +P+I I ESTY
Sbjct: 283 DMSITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIPDKHLGSANIPSLNPEIFISESTY 342
Query: 220 GVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIP 279
+ + E +++H + +GG+VLIP FA+GRAQEL ++LD+YW + H P
Sbjct: 343 ATYVRPTKKASELELCNLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKKM-KIH-YP 400
Query: 280 IYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP-LNSIDDFSDVGPSVVM 338
IY+ L + Y+ Y +N + N F F +ISP LN+ ++ P V+
Sbjct: 401 IYFGCGLTENANKYYKIYSSWINSSCMSN-EKENLFDFANISPFLNNY--LNEKRPMVLF 457
Query: 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLT-APLN 397
A+PG L +GLS + F W + +N V+PGY V+GT+ +I K+++L +G T +
Sbjct: 458 ATPGMLHTGLSLKAFKAWAGNPQNLIVLPGYCVQGTVGHKLIMGEKQISL-DGTTYIKVL 516
Query: 398 MQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
++ Y+SFSAHAD +K + P N+I VHGE + M +L
Sbjct: 517 CKIIYLSFSAHADSNGIQQLIKHVSPKNVIFVHGEKNGMQKL 558
Score = 109 (43.4 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++II LGAG VGRSCV + + + ++FDCG H Y P F+
Sbjct: 8 KIIIQVLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFN 54
Score = 47 (21.6 bits), Expect = 2.6e-62, Sum P(3) = 2.6e-62
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 425 NIILVHGESHE-MGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAK 474
N I +H H+ + +LK K+ K I N Q ++Y N K K
Sbjct: 589 NYIYIHKNIHKHILQLKKKIT------KNKHINTTNIQKTDLYINENKKKK 633
>UNIPROTKB|C9JZH6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 GO:GO:0003723
GO:GO:0004521 GO:GO:0008409 EMBL:AC080162 HGNC:HGNC:2326
ChiTaRS:CPSF3 IPI:IPI00807384 ProteinModelPortal:C9JZH6 SMR:C9JZH6
STRING:C9JZH6 Ensembl:ENST00000475482 HOGENOM:HOG000191757
ArrayExpress:C9JZH6 Bgee:C9JZH6 Uniprot:C9JZH6
Length = 136
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 93/136 (68%), Positives = 113/136 (83%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG 169
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AG
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 120
Query: 170 HVLGAAMFMVDIAGVR 185
HVLGAAMFM++IAGV+
Sbjct: 121 HVLGAAMFMIEIAGVK 136
>UNIPROTKB|C9J979 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 InterPro:IPR022712 Pfam:PF10996 HOGENOM:HOG000231294
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00514808
ProteinModelPortal:C9J979 SMR:C9J979 STRING:C9J979
Ensembl:ENST00000434694 ArrayExpress:C9J979 Bgee:C9J979
Uniprot:C9J979
Length = 344
Score = 287 (106.1 bits), Expect = 5.3e-48, Sum P(2) = 5.3e-48
Identities = 57/142 (40%), Positives = 84/142 (59%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEV 158
Q I M K+ + HQTV+V
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQV 144
Score = 243 (90.6 bits), Expect = 5.3e-48, Sum P(2) = 5.3e-48
Identities = 47/119 (39%), Positives = 72/119 (60%)
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 219 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 278
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 279 CILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHI 335
Score = 37 (18.1 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 168 AGHVLGAAMFMVDIAGVRVL 187
AG +G + +V IAG V+
Sbjct: 11 AGQDVGRSCILVSIAGKNVM 30
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 93/232 (40%), Positives = 138/232 (59%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGK 234
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 408 (148.7 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 116/377 (30%), Positives = 193/377 (51%)
Query: 21 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
G + +TPL G NE S + +S G L DCG + + P + S ID +
Sbjct: 2 GTSVQVTPLCGVYNENPLSYL-VSIDGFNFLIDCGWNDLFDTSLLEP-LSRV-ASTIDAV 58
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-VSKVSVEDM-LFD 136
L++H H +LPY +++ V+ AT+ +++L LLT Y + +S+ V D LF
Sbjct: 59 LLSHPDTLHIGALPYAMKQLGLSAPVY---ATEPVHRLGLLTMYDQFLSRKQVSDFDLFT 115
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
DI+ + + L + Q ++G I + AGH+LG +++ + G V+Y DY
Sbjct: 116 LDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDY 175
Query: 193 SREEDRHLRAAELPQF-SPDICIIESTYGVQLHQP-RNIREKRFTDVIHSTISQGGRVLI 250
+ ++RHL L F P + I ++ + + +Q R R+K F D I + GG VL+
Sbjct: 176 NHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLL 235
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P GR ELLLIL+++WS F + PIY+ + ++ + ++++ M++ I F
Sbjct: 236 PVDTAGRVLELLLILEQHWSQRG-F-SFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFE 293
Query: 311 NS--NPFKFKHISPL-NSID-DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
S N F +H++ L N D D + GP VV+AS L++G +R++F W +D +N +
Sbjct: 294 TSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLF 353
Query: 367 PGYVVEGTLAKTIISEP 383
GTLA+ + S P
Sbjct: 354 TETGQFGTLARMLQSAP 370
Score = 58 (25.5 bits), Expect = 5.2e-41, Sum P(2) = 5.2e-41
Identities = 22/117 (18%), Positives = 53/117 (45%)
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ G + E T + + + P +V + N L ++ + + + +D + + + P
Sbjct: 506 VDGRLDEATASLMLDTRPSKV-MSNELIVTVSCSLVKMDYEGRSDGRSIKSMIAHVSPLK 564
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
++LVH + LK + + C + P+ ++V++ S+ A + +L+EK
Sbjct: 565 LVLVHAIAEATEHLKQHCLNNI--C-PHVYAPQIEETVDV--TSDLCAYKV-QLSEK 615
>UNIPROTKB|E9PI75 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI01011963
ProteinModelPortal:E9PI75 SMR:E9PI75 Ensembl:ENST00000527719
ArrayExpress:E9PI75 Bgee:E9PI75 Uniprot:E9PI75
Length = 209
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 80/194 (41%), Positives = 115/194 (59%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIE 216
A + + P++ I E
Sbjct: 196 AWIDKCRPNLLITE 209
>UNIPROTKB|E9PIG1 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00981641
ProteinModelPortal:E9PIG1 SMR:E9PIG1 Ensembl:ENST00000530031
ArrayExpress:E9PIG1 Bgee:E9PIG1 Uniprot:E9PIG1
Length = 249
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 79/192 (41%), Positives = 114/192 (59%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 57 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 116
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 117 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 176
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 177 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 236
Query: 203 AELPQFSPDICI 214
A + + P++ I
Sbjct: 237 AWIDKCRPNLLI 248
>TIGR_CMR|CHY_2049 [details] [associations]
symbol:CHY_2049 "metallo-beta-lactamase family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 RefSeq:YP_360868.1
ProteinModelPortal:Q3AAG6 STRING:Q3AAG6 GeneID:3728507
KEGG:chy:CHY_2049 PATRIC:21277179 HOGENOM:HOG000244774 KO:K07576
OMA:GGRIVHH BioCyc:CHYD246194:GJCN-2048-MONOMER Uniprot:Q3AAG6
Length = 504
Score = 293 (108.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 88/303 (29%), Positives = 150/303 (49%)
Query: 160 GIKFWCYTAGHVLGAAMFMVDIAG---VR-VLYTGDYSREEDRHLRAAELPQFSP--DIC 213
G++ + AGH+LG+AM + G R +L+TGD R ++ PQ P DI
Sbjct: 152 GLEVTFFDAGHILGSAMIKIAYKGQDATRTILFTGDLGRNGRPFMKE---PQKVPLTDIL 208
Query: 214 IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP 273
++ESTYG ++ + +I + G ++IPAFA+ R Q+L+ IL++ N
Sbjct: 209 VLESTYGDRVRSEEGDLKTLLKSLIEKVYRRNGNLIIPAFAMERTQDLIYILNDLVENK- 267
Query: 274 EFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFK--H--ISPLNSIDD 328
E I +Y SPLA + +++ Y + NE + + +P F H +S +S+
Sbjct: 268 EVPPIDVYIDSPLAVEITKLFKKYPMFFNEEYKEKLNRGDDPLAFPGLHFSVSQEDSVK- 326
Query: 329 FSDVGPSVVMASPGGLQSGLSRQLF--DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV 386
+++ ++++++ G +G R ++W + +A ++ GY + TL + ++ KEV
Sbjct: 327 LNNISRAIIISASGMADAGRIRHHLKHNLWRPE--SAVLLVGYQAQDTLGRKLLDGAKEV 384
Query: 387 TLMNGLTAPLNMQV-HYISFSAHADYAQTSTFLKELM--PPNIILVHGESHEMGRLKTKL 443
+M G + +V HY SAHAD + F+ P I LVHGE LK KL
Sbjct: 385 KIM-GEEIAVKAEVYHYDGLSAHADQRELLAFIGRFSQKPAQIYLVHGEDEARLNLK-KL 442
Query: 444 MTE 446
+ E
Sbjct: 443 IEE 445
Score = 157 (60.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 46/174 (26%), Positives = 79/174 (45%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHF 84
+T GA + V SC + G L DCG+ + Y + +P I+ +L+TH
Sbjct: 3 LTFFGAADTVTGSCYLFNVAGHKFLVDCGLFQGPKAIKERNYGEFPFNPREIEFILLTHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF--------D 136
H+DH+ +P ++K FKG ++ T T + ++L D V ++ VE +
Sbjct: 63 HIDHSGLIPKLVKKG-FKGTIYATEPTVDLAAVMLPDSGHVQEMEVERKNRKLRRAGKPE 121
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-------GIKFWCYTAGHVLGAAMFMVDIAG 183
Q I + D L + Q + + G++ + AGH+LG+AM + G
Sbjct: 122 LQPIYTADDAFNALAYFQKIPLETPITPLPGLEVTFFDAGHILGSAMIKIAYKG 175
>TIGR_CMR|CPS_2623 [details] [associations]
symbol:CPS_2623 "metallo-beta-lactamase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:YP_269337.1
ProteinModelPortal:Q481D2 STRING:Q481D2 GeneID:3521490
KEGG:cps:CPS_2623 PATRIC:21468305 OMA:HGPMVII
ProtClustDB:CLSK2524370 BioCyc:CPSY167879:GI48-2685-MONOMER
Uniprot:Q481D2
Length = 451
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 113/440 (25%), Positives = 209/440 (47%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHF 84
IT LG V S ++ IL DCG++ Y + A +D ++D +++TH
Sbjct: 3 ITFLGGTGTVTGSKYFVETSTTKILVDCGLYQGYKWLRARNREPLPLDLKSLDAIVLTHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YV-----------KVSKVSVE 131
HLDH+ +P L K F+G V+ AT ++ +LL D ++ K+S+
Sbjct: 63 HLDHSGFIPA-LYKQGFRGHVYAHQATISLCSILLPDSGHIQEDDAKFYGKHKISRHENP 121
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
+ L+D+ + + +DF++ ++ I+ +AGH+LGAA ++ G RV ++GD
Sbjct: 122 EPLYDKATAEACLSLFKAVDFNEEFKIGDIEIELQSAGHILGAASVILKADGKRVGFSGD 181
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
R +D + + P D+ ++ESTYG +LH + E+ ++++ST +GG +LIP
Sbjct: 182 VGRPDDIIMYPPK-PLPPVDLLLLESTYGNRLHDKEDAFEQ-LAEIVNSTAKKGGALLIP 239
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--F 309
+FA+GR + + +L +P+Y SP+A +Y + +N R+ N+
Sbjct: 240 SFAVGRTEAVQHMLASLMKKEL-IPKLPVYLDSPMAINVFNIYCEHF-DLN-RLSNEECL 296
Query: 310 ANSNPFKF-KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
N F + + ++ + + P +++A G G D + + G
Sbjct: 297 EMCNVATFTRTVDESKALSEL--IMPHIIIAGSGMATGGRILHHLKRLLGDYRTTVLFTG 354
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLK--ELMPPN 425
Y+ GT +++ V + +G P+ +V ++ S H DY + +L+ +L P
Sbjct: 355 YLSGGTRGAKMLAGKDNVKI-HGKWLPVKARVEVLNGLSGHGDYEDITQWLQISKLHPKT 413
Query: 426 -IILVHGESHEMGRLKTKLM 444
++LVHGE ++ LM
Sbjct: 414 KVLLVHGEPEASESMRDHLM 433
>UNIPROTKB|Q9KV92 [details] [associations]
symbol:VC_0264 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K07576 OMA:CHIDHVG PIR:F82345 RefSeq:NP_229920.1
ProteinModelPortal:Q9KV92 DNASU:2614470 GeneID:2614470
KEGG:vch:VC0264 PATRIC:20079570 ProtClustDB:CLSK2517501
Uniprot:Q9KV92
Length = 455
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 115/435 (26%), Positives = 204/435 (46%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+R + ++ G + G SC + G+ +L DCG+ + G P E +D
Sbjct: 13 NRRNNMEVVHHGGKASVTG-SCHELRADGQALLIDCGL---FQGADERPLAVEFALGHVD 68
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
L++TH H+DH LP+ L K ++ T AT + L+L D +K+ ++ + E
Sbjct: 69 ALILTHAHIDHIGRLPWLLA-AGLKQPIYSTAATAELVPLMLEDGLKL-QLGMSPKQ-SE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIK---FWC--YTAGHVLGAAMFMVDIA-GVRVLYTGD 191
+ + + V D+ + V + W AGH+LG+A + G V+++GD
Sbjct: 126 RVLTEVRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNGEVVVFSGD 185
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
L + P+ + D IE+TYG + H+ R +R +I +++ GG +LIP
Sbjct: 186 LGPSHTPLLPDPQSPERA-DYLFIETTYGDKQHEDVQSRGQRLRAMIERSLTDGGAILIP 244
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY--ILSMNERIRNQF 309
AF++GR QELL +++ + N+PI SP+A++ Y+ + + + R Q
Sbjct: 245 AFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQLWGREAKARLQM 304
Query: 310 ANSNPFKFK-------HISPLNSIDDFSDVGPS-VVMASPGGLQSGLSRQLFDIWCSDKK 361
+ +P F+ H + ++ + G + +V+A+ G Q G DK+
Sbjct: 305 -HRHPLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRIMDYLKALLPDKR 363
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKE 420
++ G+ EGTL ++I S V + G +N +H +S +SAHAD A F+
Sbjct: 364 TDLILAGFQAEGTLGRSIQSGQPSVWI-EGTEVEVNAHIHTMSGYSAHADKADLLRFITG 422
Query: 421 L--MPPNIILVHGES 433
+ P + L+HGE+
Sbjct: 423 IPEKPKQVHLIHGEA 437
>TIGR_CMR|VC_0264 [details] [associations]
symbol:VC_0264 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K07576 OMA:CHIDHVG
PIR:F82345 RefSeq:NP_229920.1 ProteinModelPortal:Q9KV92
DNASU:2614470 GeneID:2614470 KEGG:vch:VC0264 PATRIC:20079570
ProtClustDB:CLSK2517501 Uniprot:Q9KV92
Length = 455
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 115/435 (26%), Positives = 204/435 (46%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+R + ++ G + G SC + G+ +L DCG+ + G P E +D
Sbjct: 13 NRRNNMEVVHHGGKASVTG-SCHELRADGQALLIDCGL---FQGADERPLAVEFALGHVD 68
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
L++TH H+DH LP+ L K ++ T AT + L+L D +K+ ++ + E
Sbjct: 69 ALILTHAHIDHIGRLPWLLA-AGLKQPIYSTAATAELVPLMLEDGLKL-QLGMSPKQ-SE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIK---FWC--YTAGHVLGAAMFMVDIA-GVRVLYTGD 191
+ + + V D+ + V + W AGH+LG+A + G V+++GD
Sbjct: 126 RVLTEVRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNGEVVVFSGD 185
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
L + P+ + D IE+TYG + H+ R +R +I +++ GG +LIP
Sbjct: 186 LGPSHTPLLPDPQSPERA-DYLFIETTYGDKQHEDVQSRGQRLRAMIERSLTDGGAILIP 244
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY--ILSMNERIRNQF 309
AF++GR QELL +++ + N+PI SP+A++ Y+ + + + R Q
Sbjct: 245 AFSVGRTQELLFDIEQLIFSQQIDANLPIILDSPMAQRVTRSYRRFKQLWGREAKARLQM 304
Query: 310 ANSNPFKFK-------HISPLNSIDDFSDVGPS-VVMASPGGLQSGLSRQLFDIWCSDKK 361
+ +P F+ H + ++ + G + +V+A+ G Q G DK+
Sbjct: 305 -HRHPLAFEQCITVEDHRTHERLVNRLASTGEAAIVVAASGMCQGGRIMDYLKALLPDKR 363
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKE 420
++ G+ EGTL ++I S V + G +N +H +S +SAHAD A F+
Sbjct: 364 TDLILAGFQAEGTLGRSIQSGQPSVWI-EGTEVEVNAHIHTMSGYSAHADKADLLRFITG 422
Query: 421 L--MPPNIILVHGES 433
+ P + L+HGE+
Sbjct: 423 IPEKPKQVHLIHGEA 437
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 372 (136.0 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 102/365 (27%), Positives = 177/365 (48%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--SAIDVLLITHFHLD 87
GA +E G C + G IL DCG + L YF+E+ P I +LI+H
Sbjct: 12 GAKDE-GPLCYLLQVDGDYILLDCGWDERFG----LQYFEELKPFIPKISAVLISHPDPL 66
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-FDEQDINRSMDK 146
H LPY + K V+ T + ++ + D V S + VE+ + D++ + +K
Sbjct: 67 HLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMV-YSHLDVEEFEHYTLDDVDTAFEK 125
Query: 147 IEVLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMV-DIAGVRVLYTGDYSREEDRHLRA 202
+E + ++QTV + +G+ F AGH+LG +++ + + G ++Y D++ +++RHL
Sbjct: 126 VEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNG 185
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNI-REKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
F+ +I + + L Q R R+++ I T+ Q G +I GR EL
Sbjct: 186 CSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLEL 245
Query: 262 LLILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS---NPFKF 317
+LD+ WSN + S +A + ++ + MNE++ ++S NPF
Sbjct: 246 AHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTL 305
Query: 318 KHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
KH++ +S + V P VV+ S ++SG SR+LF WCSD +N ++ TLA
Sbjct: 306 KHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLA 365
Query: 377 KTIIS 381
+++
Sbjct: 366 AKLVN 370
Score = 58 (25.5 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
++ ++ +I + +D T L L+P II+VHG
Sbjct: 565 VSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHG 600
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 372 (136.0 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 102/365 (27%), Positives = 177/365 (48%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--SAIDVLLITHFHLD 87
GA +E G C + G IL DCG + L YF+E+ P I +LI+H
Sbjct: 12 GAKDE-GPLCYLLQVDGDYILLDCGWDERFG----LQYFEELKPFIPKISAVLISHPDPL 66
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-FDEQDINRSMDK 146
H LPY + K V+ T + ++ + D V S + VE+ + D++ + +K
Sbjct: 67 HLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMV-YSHLDVEEFEHYTLDDVDTAFEK 125
Query: 147 IEVLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMV-DIAGVRVLYTGDYSREEDRHLRA 202
+E + ++QTV + +G+ F AGH+LG +++ + + G ++Y D++ +++RHL
Sbjct: 126 VEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNG 185
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNI-REKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
F+ +I + + L Q R R+++ I T+ Q G +I GR EL
Sbjct: 186 CSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLEL 245
Query: 262 LLILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS---NPFKF 317
+LD+ WSN + S +A + ++ + MNE++ ++S NPF
Sbjct: 246 AHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTL 305
Query: 318 KHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
KH++ +S + V P VV+ S ++SG SR+LF WCSD +N ++ TLA
Sbjct: 306 KHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLA 365
Query: 377 KTIIS 381
+++
Sbjct: 366 AKLVN 370
Score = 58 (25.5 bits), Expect = 3.9e-34, Sum P(2) = 3.9e-34
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
++ ++ +I + +D T L L+P II+VHG
Sbjct: 565 VSCRIEFIEYEGISDGESTKKLLAGLLPRQIIVVHG 600
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 342 (125.4 bits), Expect = 4.2e-31, Sum P(2) = 4.2e-31
Identities = 96/363 (26%), Positives = 170/363 (46%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA +E C + IL DCG + ++ +D +L++H H
Sbjct: 12 GAMDE-SPPCYILQIDDVRILLDCGWDEKFDANFIKELKRQVH--TLDAVLLSHPDAYHL 68
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDKIE 148
+LPY + K ++ T + ++ + D + +S ++ D LF D++ + +KI
Sbjct: 69 GALPYLVGKLGLNCPIYATIPVFKMGQMFMYD-LYMSHFNMGDFDLFSLDDVDTAFEKIT 127
Query: 149 VLDFHQTVEVN----GIKFWCYTAGHVLGAAMF-MVDIAGVRVLYTGDYSREEDRHLRAA 203
L ++QTV + GI AGH++G ++ +V + ++Y D++ +++RHL
Sbjct: 128 QLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGC 187
Query: 204 ELPQFSPDICIIESTYGVQLHQPRN-IREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
EL + +I Y Q Q R R+++ I T+ G VLI GR EL
Sbjct: 188 ELDRLQRPSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELA 247
Query: 263 LILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKH 319
+LD+ W N + + ++ + ++ I M++++ F A +NPF+FKH
Sbjct: 248 HMLDQLWKNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKH 307
Query: 320 ISPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
I +S+ D + GP VV+AS L+SG +R LF W S+ N+ ++ GTLA
Sbjct: 308 IQLCHSLADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAM 367
Query: 378 TII 380
++
Sbjct: 368 ELV 370
Score = 67 (28.6 bits), Expect = 4.2e-31, Sum P(2) = 4.2e-31
Identities = 19/89 (21%), Positives = 43/89 (48%)
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
++ +P ++ + T +N QV I F +D L +L P +I++HG + G
Sbjct: 526 LLEKPTKL-ISQRKTIEVNAQVQRIDFEGRSDGESMLKILSQLRPRRVIVIHGTAE--G- 581
Query: 439 LKTKLMTELADCNT--KIITPKNCQSVEM 465
T+++ + N ++ TP+ + +++
Sbjct: 582 --TQVVARHCEQNVGARVFTPQKGEIIDV 608
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 341 (125.1 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 101/376 (26%), Positives = 173/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + ID +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS----MDIIDSLRKHVHQIDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGSVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPSE 374
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 340 (124.7 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 101/381 (26%), Positives = 173/381 (45%)
Query: 27 TPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVLLITHFH 85
T L + C + IL DCG+ +Y+ + L +++ ID +L++H
Sbjct: 8 TALSGAKDESPPCYLLEIDDFCILLDCGL--SYNLDFSLLEPLEKV-AKKIDAVLLSHSD 64
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV--KVSKVSVEDMLFDEQDINRS 143
H LPY + K G ++ T + + L D K+S+ + D D
Sbjct: 65 TTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEEFQQYSLDNIDSCFG 124
Query: 144 MDKIEVLDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
D+ + L F Q ++G I Y AGH +GA+++ + ++Y DY+ + H
Sbjct: 125 EDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHRNEGH 184
Query: 200 LRAAELPQ--FSPDICIIESTYGVQ--LHQPRNI-REKRFTDVIHSTISQGGRVLIPAFA 254
L + +L P + I +S GV L + I R++ + I+ + GG VLIP
Sbjct: 185 LDSLQLTSDILKPSLLITDSK-GVDKTLAFKKTITRDQSLFEQINRNLRDGGNVLIPVDT 243
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLA-KKCM-AVYQTYILSMNERIRNQFANS 312
GR ELLL ++ YWS + + + + C A Q +S ++ +
Sbjct: 244 AGRVLELLLCIENYWSKNKSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKFEQNIE 303
Query: 313 NPFKFKHISPLNSIDDFSDVGPS--VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
NPF FKHI L+S+++ ++ + V++ S L++G SR+LF WCSD K + +
Sbjct: 304 NPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLILFTQKI 363
Query: 371 VEGTLAKTIISEPKEVTLMNG 391
+ +LA +I K+ + NG
Sbjct: 364 PKDSLADKLI---KQYSTPNG 381
Score = 65 (27.9 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 370 VVEGTLAKTIISE---PKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
V E T+ + I E PK++ + L P+N ++ I + +D ++++ P +
Sbjct: 525 VEEVTMEEDEIQEQEIPKKI-ITQTLRLPINCKIQTIDYEGCSDGRSIKAIIQQIAPTKL 583
Query: 427 ILVHGESHE 435
+L+ G +
Sbjct: 584 VLIRGSEQQ 592
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 347 (127.2 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 101/376 (26%), Positives = 174/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + +D +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDENFS----MDIIDSLKKHVHQVDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S +S+ D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHSLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDSKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPSE 374
Score = 55 (24.4 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 13/69 (18%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +++VHG E + + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLVIVHGPP-EASQDLAECCRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
PK ++V+
Sbjct: 590 MPKLHETVD 598
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 344 (126.2 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 100/376 (26%), Positives = 175/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + +D +L++H
Sbjct: 7 LTALSGVQEESALCYLLQVDEFRFLLDCGWDETFS----MDIIDSLKRYVHQVDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDHVHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDS 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L + Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYGVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLESLSRPSLLITDSFNASYVQPRRKQRDEQLLTNVME-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S +S+ D + V P VV+ S L+SG SR+LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHSLSDLARVPSPKVVLCSQPDLESGFSRELFIQWCQDAKNSVILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARYLIDNPGE 374
Score = 57 (25.1 bits), Expect = 3.2e-30, Sum P(2) = 3.2e-30
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 393 TAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
T + +V YI + +D + ++ P +I+VHG
Sbjct: 529 TLDIRARVMYIDYEGRSDGDSIKKIINQMKPRQLIIVHG 567
Score = 39 (18.8 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 461 QSVEMYFNSEKMAKTIGRLAEKTPEV 486
+ +E Y E+M K + E+ EV
Sbjct: 390 RELEEYMEKERMKKEAAKKLEQAKEV 415
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 342 (125.4 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 101/376 (26%), Positives = 173/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + ID +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS----MDIIDSLRKHVHQIDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPSE 374
Score = 56 (24.8 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +I+VHG E + + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
PK ++V+
Sbjct: 590 MPKLHETVD 598
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 342 (125.4 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 101/376 (26%), Positives = 173/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + ID +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS----MDIIDSLRKHVHQIDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPSE 374
Score = 56 (24.8 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +I+VHG E + + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
PK ++V+
Sbjct: 590 MPKLHETVD 598
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 342 (125.4 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 101/376 (26%), Positives = 173/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + ID +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS----MDIIDSLRKHVHQIDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPSE 374
Score = 56 (24.8 bits), Expect = 7.1e-30, Sum P(2) = 7.1e-30
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +I+VHG E + + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
PK ++V+
Sbjct: 590 MPKLHETVD 598
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 337 (123.7 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 100/376 (26%), Positives = 173/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + ID +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS----VDIIDSLRKHVHQIDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LP+ + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPSE 374
Score = 56 (24.8 bits), Expect = 3.1e-29, Sum P(2) = 3.1e-29
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +I+VHG E + + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
PK ++V+
Sbjct: 590 MPKLHETVD 598
>TIGR_CMR|DET_1061 [details] [associations]
symbol:DET_1061 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576
RefSeq:YP_181776.1 ProteinModelPortal:Q3Z7M3 STRING:Q3Z7M3
GeneID:3229629 KEGG:det:DET1061 PATRIC:21609167
ProtClustDB:CLSK2516599 BioCyc:DETH243164:GJNF-1062-MONOMER
Uniprot:Q3Z7M3
Length = 468
Score = 264 (98.0 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 80/328 (24%), Positives = 151/328 (46%)
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR----VLY 188
L+ +D + +++ + + V I + AGHV G+A + I +++
Sbjct: 129 LYTAEDARAVSPLFKTVEYSREIAVTEDITATFHNAGHVFGSASIELKIQENHRQKVIVF 188
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
+GD + L+ +L D +IESTYG + HQ N + ++I+ T+ GG +
Sbjct: 189 SGDLGNWDRPILKNPDLVN-QADYVVIESTYGDRTHQDINEASLKLAEIINQTVKLGGNI 247
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
+IP+FAL R Q+LL L+ + S + ++ ++ SP+A +++ + + +R +
Sbjct: 248 VIPSFALERTQDLLFFLNRFMSEG-KIPSLKVFVDSPMAISITKIFKEHP-ELYDRETSG 305
Query: 309 FAN--SNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ N S+PF+F+ + N D ++ P +++A G G + S ++
Sbjct: 306 WVNNGSSPFEFEGLHFTNKAADSKAILAEKDPCIIIAGSGMCTGGRIKHHLVNNISRPES 365
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL 421
+ G+ GTL + I KEV ++ G P+ ++ + +FSAHAD +LK
Sbjct: 366 TILFVGFQATGTLGRLITDGAKEVRIL-GQHYPVQARIEELRAFSAHADQPTLLRWLKGF 424
Query: 422 M--PPNIILVHGESHEMGRLKTKLMTEL 447
P + + HGE R + L
Sbjct: 425 KNKPEMVFVTHGEPETSARFTETIKNTL 452
Score = 127 (49.8 bits), Expect = 3.4e-29, Sum P(2) = 3.4e-29
Identities = 37/112 (33%), Positives = 53/112 (47%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDEIDPSAIDVLLITHFHL 86
LGA V S + +L DCG++ P+ EI P ++ ++I+H H+
Sbjct: 8 LGAARNVTGSRYLIKTDHTQLLVDCGLYQERRLQDRNWQPF--EIPPQSLSAVIISHAHI 65
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
DH LP L K F G VF T AT I ++ LTD K+ ED F ++
Sbjct: 66 DHCGLLPK-LVKEGFAGPVFATEATAEIARISLTD---AGKLQEEDAAFKKK 113
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 333 (122.3 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 97/376 (25%), Positives = 174/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + +D +L++H
Sbjct: 7 LTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFS----MDIIDSVKKYVHQVDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFSLFSLDDVDC 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L ++Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L + +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H++ + D + V P VV+AS L+ G SR+LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLTLCHGYSDLARVPSPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDHPSE 374
Score = 60 (26.2 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 15/69 (21%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +I+VHG L + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPDATQDL-AEACRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
TPK ++V+
Sbjct: 590 TPKLHETVD 598
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 336 (123.3 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 100/376 (26%), Positives = 173/376 (46%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T L E C + L DCG +S + D + ID +L++H
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS----VDIIDSLRKHVHQIDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LP+ + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDDVDA 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDNPTE 374
Score = 56 (24.8 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 14/69 (20%), Positives = 30/69 (43%)
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+ +V YI + +D + ++ P +I+VHG E + + + K+
Sbjct: 531 IKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPP-EASQDLAECCRAFGGKDIKVY 589
Query: 456 TPKNCQSVE 464
PK ++V+
Sbjct: 590 MPKLHETVD 598
>UNIPROTKB|Q8EJC6 [details] [associations]
symbol:SO_0541 "RNA-metabolizing metallo-beta-lactamase
family protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774
KO:K07576 RefSeq:NP_716177.2 ProteinModelPortal:Q8EJC6
DNASU:1168409 GeneID:1168409 KEGG:son:SO_0541 PATRIC:23520762
ProtClustDB:CLSK2516780 Uniprot:Q8EJC6
Length = 480
Score = 236 (88.1 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 82/317 (25%), Positives = 156/317 (49%)
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAMFMVDIA-GV---RVLY 188
LF +D +++ + L++ Q V C + AGH+LG+A+ + + G ++++
Sbjct: 127 LFTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSALVELWLGEGKSQKKIVF 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG-GR 247
+GD R L+ L + D+ ++ESTYG + H+ D+ T+++ G
Sbjct: 187 SGDLGRAGMPILQNPTLVD-TADLVLMESTYGNRFHRSWTDTLAELKDIFAKTVNESQGN 245
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
+L+PAF++GRAQELL + Y + + I SP+A + VY M+E +
Sbjct: 246 ILLPAFSVGRAQELLYLFHLY-AKEWDLGRWKICLDSPMAIEATRVYVNNYPLMDEDFK- 303
Query: 308 QFANSNPFKFKHISPLNSIDD------FSDVGPSVVMASPGGLQSG---LSRQLFDIWCS 358
+F +P + +S + I ++V +++ + G+ +G S ++W S
Sbjct: 304 RFTRQHPGQHPLLSNVEFIQTTEESIALNEVHKGLIIIAGSGMCNGGRIRSHLEHNLWRS 363
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTF 417
+ +I G+ GT + ++ KE+T+ +G + + ++H + SAHAD A+ +
Sbjct: 364 ECD--VIICGFQALGTPGRALVDGAKELTI-HGNSVNVAAKLHTVGGLSAHADQAELLRW 420
Query: 418 LK--ELMPPNIILVHGE 432
+ E PP ++LVHGE
Sbjct: 421 YRHFEEQPP-LVLVHGE 436
Score = 147 (56.8 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 49/172 (28%), Positives = 81/172 (47%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFDEI--DPSAIDVL 79
Q+ + LGA EV SC ++ GK +L DCG+ G A L + DP I +
Sbjct: 2 QMTLQFLGAAREVTGSCHLVTVAGKHLLLDCGL--IQGGKADELRNHEPFVFDPQTIVAV 59
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS---------KVSV 130
+++H H+DH+ LP L K F G ++ AT + ++L D + K +
Sbjct: 60 VLSHAHIDHSGRLP-LLVKAGFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTNKKRAK 118
Query: 131 EDM-----LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAM 176
D+ LF +D +++ + L++ Q V C + AGH+LG+A+
Sbjct: 119 HDLAPLEPLFTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSAL 170
>TIGR_CMR|SO_0541 [details] [associations]
symbol:SO_0541 "metallo-beta-lactamase family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003824 "catalytic activity"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_716177.2
ProteinModelPortal:Q8EJC6 DNASU:1168409 GeneID:1168409
KEGG:son:SO_0541 PATRIC:23520762 ProtClustDB:CLSK2516780
Uniprot:Q8EJC6
Length = 480
Score = 236 (88.1 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 82/317 (25%), Positives = 156/317 (49%)
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAMFMVDIA-GV---RVLY 188
LF +D +++ + L++ Q V C + AGH+LG+A+ + + G ++++
Sbjct: 127 LFTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSALVELWLGEGKSQKKIVF 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG-GR 247
+GD R L+ L + D+ ++ESTYG + H+ D+ T+++ G
Sbjct: 187 SGDLGRAGMPILQNPTLVD-TADLVLMESTYGNRFHRSWTDTLAELKDIFAKTVNESQGN 245
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
+L+PAF++GRAQELL + Y + + I SP+A + VY M+E +
Sbjct: 246 ILLPAFSVGRAQELLYLFHLY-AKEWDLGRWKICLDSPMAIEATRVYVNNYPLMDEDFK- 303
Query: 308 QFANSNPFKFKHISPLNSIDD------FSDVGPSVVMASPGGLQSG---LSRQLFDIWCS 358
+F +P + +S + I ++V +++ + G+ +G S ++W S
Sbjct: 304 RFTRQHPGQHPLLSNVEFIQTTEESIALNEVHKGLIIIAGSGMCNGGRIRSHLEHNLWRS 363
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTF 417
+ +I G+ GT + ++ KE+T+ +G + + ++H + SAHAD A+ +
Sbjct: 364 ECD--VIICGFQALGTPGRALVDGAKELTI-HGNSVNVAAKLHTVGGLSAHADQAELLRW 420
Query: 418 LK--ELMPPNIILVHGE 432
+ E PP ++LVHGE
Sbjct: 421 YRHFEEQPP-LVLVHGE 436
Score = 147 (56.8 bits), Expect = 7.4e-28, Sum P(2) = 7.4e-28
Identities = 49/172 (28%), Positives = 81/172 (47%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFDEI--DPSAIDVL 79
Q+ + LGA EV SC ++ GK +L DCG+ G A L + DP I +
Sbjct: 2 QMTLQFLGAAREVTGSCHLVTVAGKHLLLDCGL--IQGGKADELRNHEPFVFDPQTIVAV 59
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS---------KVSV 130
+++H H+DH+ LP L K F G ++ AT + ++L D + K +
Sbjct: 60 VLSHAHIDHSGRLP-LLVKAGFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTNKKRAK 118
Query: 131 EDM-----LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAM 176
D+ LF +D +++ + L++ Q V C + AGH+LG+A+
Sbjct: 119 HDLAPLEPLFTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSAL 170
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 279 (103.3 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 88/315 (27%), Positives = 151/315 (47%)
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGR-VFMTHATKAIYKLLLTDYVKVSKVSVE 131
P D++L++H L H L Y K +K ++ T T + ++ + D +K + +S
Sbjct: 41 PEQPDLILLSHSDLAHIGGLVYAYYKYDWKNAYIYATLPTINMGRMTMLDAIKSNYIS-- 98
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTV----EVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
DM + D++ D I L + Q + +G+ Y AGH LG ++ + VL
Sbjct: 99 DM--SKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESESVL 156
Query: 188 YTGDYSREEDRHLRAAELPQFS--------PDICIIESTYGVQLHQPRNIREKRFTDVIH 239
Y D++ +D+HL A L P+ I ++ + R R++ F + +
Sbjct: 157 YAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAFIESVM 216
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWS-NHPEFHNIPIYYASPLAKKCMAVYQTYI 298
S++ +GG VL+P A R EL ILD +WS + P PI + SP + K + ++ I
Sbjct: 217 SSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLP-FPILFLSPTSTKTIDYAKSMI 275
Query: 299 LSMNERIRNQFA-NSNPFKFKHISPLNSIDDFSDV-----GPSVVMASPGGLQSGLSRQ- 351
M + I F N N +F++I N+I DFS + GP V++A+ L+ G S++
Sbjct: 276 EWMGDNIVRDFGINENLLEFRNI---NTITDFSQISHIGPGPKVILATALTLECGFSQRI 332
Query: 352 LFDIWCSDKKNACVI 366
L D+ S+ N ++
Sbjct: 333 LLDLM-SENSNDLIL 346
Score = 56 (24.8 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 393 TAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT 452
T ++ QV +I D T + ++ P ++L+H + E +K K L+
Sbjct: 565 TIRVSCQVQFIDIEGLHDGRSLKTIIPQVNPRRLVLIHASTEEKEDMK-KTCASLSAFTK 623
Query: 453 KIITP 457
+ P
Sbjct: 624 DVYIP 628
>UNIPROTKB|E9PIL7 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00977321
ProteinModelPortal:E9PIL7 SMR:E9PIL7 Ensembl:ENST00000534345
ArrayExpress:E9PIL7 Bgee:E9PIL7 Uniprot:E9PIL7
Length = 140
Score = 258 (95.9 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 53/138 (38%), Positives = 79/138 (57%)
Query: 23 QLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----I 76
++ +TPL GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +
Sbjct: 3 EIRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFL 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 DCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFF 122
Query: 136 DEQDINRSMDKIEVLDFH 153
Q I M K+ + H
Sbjct: 123 TSQMIKDCMKKVVAVHLH 140
>UNIPROTKB|Q81SC3 [details] [associations]
symbol:BA_1737 "Metallo-beta-lactamase family protein"
species:1392 "Bacillus anthracis" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 Pfam:PF07521
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 RefSeq:NP_844172.1
RefSeq:YP_018378.1 ProteinModelPortal:Q81SC3 IntAct:Q81SC3
DNASU:1086535 EnsemblBacteria:EBBACT00000009201
EnsemblBacteria:EBBACT00000014472 GeneID:1086535 GeneID:2817971
KEGG:ban:BA_1737 KEGG:bar:GBAA_1737 PATRIC:18781074
HOGENOM:HOG000087450 OMA:SQHERVN ProtClustDB:CLSK2516952
BioCyc:BANT261594:GJ7F-1754-MONOMER Uniprot:Q81SC3
Length = 419
Score = 272 (100.8 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 97/364 (26%), Positives = 180/364 (49%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLDH 88
GAG E GRSC ++ K ILFDCGI+ +Y + P + E+ P ++ + ++H H DH
Sbjct: 8 GAG-EYGRSCYFVKNKETKILFDCGINRSYED--SYPKIEREVVPF-LEAVFLSHIHEDH 63
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKI- 147
LP L K +K +++ T TK + + ++ +++Q++ + ++ I
Sbjct: 64 TMGLP-LLAKYGYKKKIWTTRYTKEQLPAYYEKWRNYNVTQGWNVPYNDQNV-KDLNYIY 121
Query: 148 --EVLDFHQTVEVNG-IKF-WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
E+ + ++ +++ ++F W Y+ GHVLG+ F+VD++ V Y+GDYS E + LRA
Sbjct: 122 VDEISNPNEWIQITPTLRFQWGYS-GHVLGSVWFLVDMSHTYVFYSGDYSAESNI-LRA- 178
Query: 204 ELPQ-FSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
LP+ DI I+++ Y R R I G L+P LGRAQ+
Sbjct: 179 NLPEKLRGDIKVAIVDAAYHTDDVSQRE-RVNELCTEIERAAGNKGIALLPLPPLGRAQD 237
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKC--MAVYQTYILSMNERIRNQFANSNPFKFK 318
++L L E + EF PI + M +Y+ +I N + + S K +
Sbjct: 238 IVLYLYE---KYKEF---PIIVDQEILDGFDEMFLYKDWI--KNNKELEELMES--LK-R 286
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+I ++ D + +V+ S +Q+ ++ ++ +++N+ + G+V +G+ A+
Sbjct: 287 NIIVMDD-DGGTQHSCGIVVMSDANMQTKRAQLYYEQIRHEERNSIIFTGHVAKGSFAEK 345
Query: 379 IISE 382
++ E
Sbjct: 346 VLKE 349
>TIGR_CMR|BA_1737 [details] [associations]
symbol:BA_1737 "metallo-beta-lactamase family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 Pfam:PF07521
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 RefSeq:NP_844172.1
RefSeq:YP_018378.1 ProteinModelPortal:Q81SC3 IntAct:Q81SC3
DNASU:1086535 EnsemblBacteria:EBBACT00000009201
EnsemblBacteria:EBBACT00000014472 GeneID:1086535 GeneID:2817971
KEGG:ban:BA_1737 KEGG:bar:GBAA_1737 PATRIC:18781074
HOGENOM:HOG000087450 OMA:SQHERVN ProtClustDB:CLSK2516952
BioCyc:BANT261594:GJ7F-1754-MONOMER Uniprot:Q81SC3
Length = 419
Score = 272 (100.8 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 97/364 (26%), Positives = 180/364 (49%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLDH 88
GAG E GRSC ++ K ILFDCGI+ +Y + P + E+ P ++ + ++H H DH
Sbjct: 8 GAG-EYGRSCYFVKNKETKILFDCGINRSYED--SYPKIEREVVPF-LEAVFLSHIHEDH 63
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKI- 147
LP L K +K +++ T TK + + ++ +++Q++ + ++ I
Sbjct: 64 TMGLP-LLAKYGYKKKIWTTRYTKEQLPAYYEKWRNYNVTQGWNVPYNDQNV-KDLNYIY 121
Query: 148 --EVLDFHQTVEVNG-IKF-WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
E+ + ++ +++ ++F W Y+ GHVLG+ F+VD++ V Y+GDYS E + LRA
Sbjct: 122 VDEISNPNEWIQITPTLRFQWGYS-GHVLGSVWFLVDMSHTYVFYSGDYSAESNI-LRA- 178
Query: 204 ELPQ-FSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
LP+ DI I+++ Y R R I G L+P LGRAQ+
Sbjct: 179 NLPEKLRGDIKVAIVDAAYHTDDVSQRE-RVNELCTEIERAAGNKGIALLPLPPLGRAQD 237
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKC--MAVYQTYILSMNERIRNQFANSNPFKFK 318
++L L E + EF PI + M +Y+ +I N + + S K +
Sbjct: 238 IVLYLYE---KYKEF---PIIVDQEILDGFDEMFLYKDWI--KNNKELEELMES--LK-R 286
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+I ++ D + +V+ S +Q+ ++ ++ +++N+ + G+V +G+ A+
Sbjct: 287 NIIVMDD-DGGTQHSCGIVVMSDANMQTKRAQLYYEQIRHEERNSIIFTGHVAKGSFAEK 345
Query: 379 IISE 382
++ E
Sbjct: 346 VLKE 349
>UNIPROTKB|Q74C32 [details] [associations]
symbol:GSU1843 "RNA exonuclease, beta-lactamase fold
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 154 (59.3 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 54/186 (29%), Positives = 86/186 (46%)
Query: 168 AGHVLGAAMFMVDIA------------GVR----VLYTGDYSREEDRHLRAAELPQFSPD 211
AGH+LG+A V ++ G R V+++GD L + P+ + D
Sbjct: 149 AGHILGSAYVEVSVSPASQAEQTGTVNGTRGDTVVVFSGDLGAPFTPLLPDPKPPERA-D 207
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
I ++ESTYG + H+ R R +R VI + G +L+PAF++GR QELL +++ S
Sbjct: 208 ILVLESTYGDRQHEGREQRRERLCRVIVRALENRGALLVPAFSIGRTQELLYEIEDLISR 267
Query: 272 HPE--------FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFKHISP 322
H + ++ I SPLA VY +E A N +P F+ ++
Sbjct: 268 HRTEEAAAGLPWDDLEIIVDSPLALSVTRVYDRLRRLWDEEALETVAQNRHPLSFEQMTV 327
Query: 323 LNSIDD 328
+ S D
Sbjct: 328 IESHAD 333
Score = 125 (49.1 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 38/141 (26%), Positives = 65/141 (46%)
Query: 49 ILFDCGIHPAYSGMAA--LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVF 106
IL DCG+ G P+ D + L++TH H+DH +P+ L F+G ++
Sbjct: 27 ILIDCGLLQGNDGAGGKRFPFID-FPLDRVKGLVLTHVHIDHCGRIPHLLG-AGFQGPIW 84
Query: 107 MTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDF---HQTVEVNG--I 161
+ A+ + L+L D VKV E ++ + +N ++ L + HQ +G
Sbjct: 85 CSEASALLLPLVLEDAVKVGITRDEHLI--ARFLNAVKKRLVPLPYDRWHQLGSWDGRSA 142
Query: 162 KFWCYTAGHVLGAAMFMVDIA 182
AGH+LG+A V ++
Sbjct: 143 SLRLQQAGHILGSAYVEVSVS 163
Score = 111 (44.1 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 48/176 (27%), Positives = 73/176 (41%)
Query: 277 NIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFKHISPLNSIDDF------ 329
++ I SPLA VY +E A N +P F+ ++ + S D
Sbjct: 281 DLEIIVDSPLALSVTRVYDRLRRLWDEEALETVAQNRHPLSFEQMTVIESHADHRATVEY 340
Query: 330 --SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV- 386
P +V+A+ G G D + + GY GT + I+ K+
Sbjct: 341 LRKTARPCIVIAAGGMCAGGRIVNYLKALMPDPRTDILFVGYQAAGTPGREILEAAKQKW 400
Query: 387 ------TL-MNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL-MPPNII-LVHGE 432
++ ++G T PL VH IS +SAHAD F++ + +PP I LVHGE
Sbjct: 401 ETGGRPSIDLDGGTYPLRAAVHTISGYSAHADQRDLVEFVEGITVPPKTIRLVHGE 456
Score = 59 (25.8 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKI 454
PL+ + + +HAD+ T +L++ P I++ G GR+ L + D T I
Sbjct: 319 PLSFEQMTV-IESHADHRATVEYLRKTARPCIVIAAGGMCAGGRIVNYLKALMPDPRTDI 377
Query: 455 I 455
+
Sbjct: 378 L 378
Score = 43 (20.2 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQI 503
KTI RL E ++G+L +KG YQ+
Sbjct: 448 KTI-RLVHGEEEARTALAGVLAEKG--YQV 474
>TIGR_CMR|GSU_1843 [details] [associations]
symbol:GSU_1843 "metallo-beta-lactamase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004527
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 154 (59.3 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 54/186 (29%), Positives = 86/186 (46%)
Query: 168 AGHVLGAAMFMVDIA------------GVR----VLYTGDYSREEDRHLRAAELPQFSPD 211
AGH+LG+A V ++ G R V+++GD L + P+ + D
Sbjct: 149 AGHILGSAYVEVSVSPASQAEQTGTVNGTRGDTVVVFSGDLGAPFTPLLPDPKPPERA-D 207
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
I ++ESTYG + H+ R R +R VI + G +L+PAF++GR QELL +++ S
Sbjct: 208 ILVLESTYGDRQHEGREQRRERLCRVIVRALENRGALLVPAFSIGRTQELLYEIEDLISR 267
Query: 272 HPE--------FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFKHISP 322
H + ++ I SPLA VY +E A N +P F+ ++
Sbjct: 268 HRTEEAAAGLPWDDLEIIVDSPLALSVTRVYDRLRRLWDEEALETVAQNRHPLSFEQMTV 327
Query: 323 LNSIDD 328
+ S D
Sbjct: 328 IESHAD 333
Score = 125 (49.1 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 38/141 (26%), Positives = 65/141 (46%)
Query: 49 ILFDCGIHPAYSGMAA--LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVF 106
IL DCG+ G P+ D + L++TH H+DH +P+ L F+G ++
Sbjct: 27 ILIDCGLLQGNDGAGGKRFPFID-FPLDRVKGLVLTHVHIDHCGRIPHLLG-AGFQGPIW 84
Query: 107 MTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDF---HQTVEVNG--I 161
+ A+ + L+L D VKV E ++ + +N ++ L + HQ +G
Sbjct: 85 CSEASALLLPLVLEDAVKVGITRDEHLI--ARFLNAVKKRLVPLPYDRWHQLGSWDGRSA 142
Query: 162 KFWCYTAGHVLGAAMFMVDIA 182
AGH+LG+A V ++
Sbjct: 143 SLRLQQAGHILGSAYVEVSVS 163
Score = 111 (44.1 bits), Expect = 8.0e-12, Sum P(3) = 8.0e-12
Identities = 48/176 (27%), Positives = 73/176 (41%)
Query: 277 NIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFKHISPLNSIDDF------ 329
++ I SPLA VY +E A N +P F+ ++ + S D
Sbjct: 281 DLEIIVDSPLALSVTRVYDRLRRLWDEEALETVAQNRHPLSFEQMTVIESHADHRATVEY 340
Query: 330 --SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV- 386
P +V+A+ G G D + + GY GT + I+ K+
Sbjct: 341 LRKTARPCIVIAAGGMCAGGRIVNYLKALMPDPRTDILFVGYQAAGTPGREILEAAKQKW 400
Query: 387 ------TL-MNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL-MPPNII-LVHGE 432
++ ++G T PL VH IS +SAHAD F++ + +PP I LVHGE
Sbjct: 401 ETGGRPSIDLDGGTYPLRAAVHTISGYSAHADQRDLVEFVEGITVPPKTIRLVHGE 456
Score = 59 (25.8 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKI 454
PL+ + + +HAD+ T +L++ P I++ G GR+ L + D T I
Sbjct: 319 PLSFEQMTV-IESHADHRATVEYLRKTARPCIVIAAGGMCAGGRIVNYLKALMPDPRTDI 377
Query: 455 I 455
+
Sbjct: 378 L 378
Score = 43 (20.2 bits), Expect = 7.9e-19, Sum P(4) = 7.9e-19
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQI 503
KTI RL E ++G+L +KG YQ+
Sbjct: 448 KTI-RLVHGEEEARTALAGVLAEKG--YQV 474
>UNIPROTKB|E9PQF0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00982774
ProteinModelPortal:E9PQF0 SMR:E9PQF0 Ensembl:ENST00000498476
ArrayExpress:E9PQF0 Bgee:E9PQF0 Uniprot:E9PQF0
Length = 167
Score = 229 (85.7 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 42/98 (42%), Positives = 61/98 (62%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 70 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 129
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122
HLDH +LPYF E + G ++MTH T+AI +LL DY
Sbjct: 130 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY 167
>DICTYBASE|DDB_G0282473 [details] [associations]
symbol:ints9 "integrator complex subunit 9"
species:44689 "Dictyostelium discoideum" [GO:0032039 "integrator
complex" evidence=IEA] [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR027074 dictyBase:DDB_G0282473
GO:GO:0005634 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
eggNOG:COG1236 InterPro:IPR022712 Pfam:PF10996 SMART:SM01027
KO:K13146 PANTHER:PTHR11203:SF2 RefSeq:XP_640069.1
ProteinModelPortal:Q54SH0 EnsemblProtists:DDB0234099 GeneID:8623598
KEGG:ddi:DDB_G0282473 OMA:DDFSTID ProtClustDB:CLSZ2729002
Uniprot:Q54SH0
Length = 712
Score = 190 (71.9 bits), Expect = 2.6e-18, Sum P(3) = 2.6e-18
Identities = 82/369 (22%), Positives = 176/369 (47%)
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV-RVLYTGDY 192
L+ + DI +S +KI+ + F+++++ G + ++G+ LG+A ++++ G RV+Y D
Sbjct: 217 LYKKIDIEKSFEKIQSIRFNESIKHYGFECIPSSSGYGLGSANWVIESKGFERVVYISDS 276
Query: 193 SREEDRHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDV---IHSTISQGGRV 248
S R+ +L P +PD+ I+ H P N ++ +++ I ST+ QGG V
Sbjct: 277 SLSLSRYPTPFQLSPIDNPDVLILSKIN----HYPNNPPDQMLSELCSNIGSTLQQGGTV 332
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIP+++ G +L L +Y N +PIY+ S ++K ++ Y +N+ + +
Sbjct: 333 LIPSYSCGIILDLFEHLADYL-NKVGLPYVPIYFVSSVSKAVLSYADIYSEWLNKSKQER 391
Query: 309 -FANSNPFKFKHISPLNSIDDFSDV-------GPSVVMASPGGLQSGLSRQLFDIWCSDK 360
F PF + + + V P ++ + G L ++ + K
Sbjct: 392 AFMPETPFLHQDLMRKGQFQAYQHVHSNFQANDPCIIFTGHPSCRIGDITTLIKLYDNPK 451
Query: 361 KNACVI-PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
+ +I P + T++ K+++ + L P++ ++++ A+ ++ S K
Sbjct: 452 NSILLIEPDF----DFKSTVLPFSKQISRIQFL--PIDPRINFNE--ANLLISKLSP--K 501
Query: 420 ELMPPNIILVHGES-HEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIG- 477
L+ P I + ++ H G ++T + +T I +N Q+ E F +++A+TI
Sbjct: 502 HLIIPRIYKNYVKNKHSNGNFG--IVTTILPLDT--IKIQNNQNFESGFIDKELAQTIQT 557
Query: 478 RLAEKTPEV 486
++ +K+ ++
Sbjct: 558 KVLDKSSQL 566
Score = 111 (44.1 bits), Expect = 2.6e-18, Sum P(3) = 2.6e-18
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 66 PYFDEIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
P F+ ID S ID++LI+++ +A LP+ E T F+G+++ T T I KLLL + V+
Sbjct: 106 PQFEMIDDFSTIDMILISNYTNIYA--LPFITEYTNFQGKIYATEPTVQIGKLLLEELVQ 163
Query: 125 VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV 158
+ K + IN + + + D Q +E+
Sbjct: 164 MDKQ------YSNSSINNNNNNNNLSDCWQNIEI 191
Score = 43 (20.2 bits), Expect = 2.6e-18, Sum P(3) = 2.6e-18
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + YK IL DC +
Sbjct: 14 CFLLEYKNVKILLDCAL 30
>UNIPROTKB|Q0C1L6 [details] [associations]
symbol:HNE_1669 "Putative uncharacterized protein"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001279 SMART:SM00849 GO:GO:0016787 EMBL:CP000158
GenomeReviews:CP000158_GR eggNOG:COG1236 RefSeq:YP_760377.1
ProteinModelPortal:Q0C1L6 STRING:Q0C1L6 GeneID:4288204
KEGG:hne:HNE_1669 PATRIC:32216161 HOGENOM:HOG000035995 OMA:STFGLPI
ProtClustDB:CLSK2517173 BioCyc:HNEP228405:GI69-1701-MONOMER
InterPro:IPR026360 TIGRFAMs:TIGR04122 Uniprot:Q0C1L6
Length = 333
Score = 173 (66.0 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 51/158 (32%), Positives = 82/158 (51%)
Query: 152 FHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSP- 210
+ +TVEV ++ Y AGHVLG+A +++ AG RV+ TGD+ R D P F P
Sbjct: 74 YGETVEVGDVRVTLYPAGHVLGSAQVLLERAGERVIVTGDFKRAAD-----PTCPPFVPI 128
Query: 211 --DICIIESTYGVQL--HQPRNIREKRFTDVIHSTISQGGR-VLIPAFALGRAQELLLIL 265
D+ I E+T+G+ + H P + V+ R VL+ A+ALG+AQ ++ L
Sbjct: 129 ACDVLITEATFGLPVFRHPPAS---DEIAKVMERLAESPERCVLVGAYALGKAQRVICHL 185
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
E ++ PIY + K C A+Y+ + +++ E
Sbjct: 186 REAG------YDKPIYLHGAMEKLC-ALYEAHGVALGE 216
Score = 53 (23.7 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
S HAD+ + + ++E+ P + + HG E G L+
Sbjct: 278 SDHADWEELTRTIREVAPSEVWVTHGS--EAGLLR 310
Score = 49 (22.3 bits), Expect = 4.3e-13, Sum P(3) = 4.3e-13
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 55 IHPAYSGMAALPYFDEIDPSAIDVL-LITHFHLDHA 89
I P G+ +DPS L ++TH H DHA
Sbjct: 8 IKPGAGGIEVAGGAAFVDPSLPKPLAIVTHGHADHA 43
>UNIPROTKB|H0YBH8 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592
ChiTaRS:INTS9 Ensembl:ENST00000524081 Uniprot:H0YBH8
Length = 223
Score = 154 (59.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 39/130 (30%), Positives = 71/130 (54%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL +
Sbjct: 77 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLPSPLKD 134
Query: 125 VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAG 183
+VS + Q++N ++ KI+++ + Q +E+ G ++ ++G+ LG++ +++
Sbjct: 135 AVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSSNWIIQSHY 194
Query: 184 VRVLYTGDYS 193
+V Y S
Sbjct: 195 EKVSYVSGSS 204
Score = 48 (22.0 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 6 CNVLKFKSTTIMLDCGL 22
>UNIPROTKB|F6XI08 [details] [associations]
symbol:INTS9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032039 "integrator complex" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] InterPro:IPR027074
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 CTD:55756 KO:K13146
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 OMA:PLAMKCV
Ensembl:ENSCAFT00000013124 EMBL:AAEX03014336 RefSeq:XP_543216.2
GeneID:486090 KEGG:cfa:486090 Uniprot:F6XI08
Length = 658
Score = 173 (66.0 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 91/424 (21%), Positives = 177/424 (41%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 143 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 259
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I+ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 260 VLILTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 318
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
NIP Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 319 -AGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQTK-VYLPEPPFPHAELIQTNKLKHY 376
Query: 321 SPLNSIDDFS-DVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
L+ DFS D P VV L+ G ++W G + +L
Sbjct: 377 PSLHG--DFSSDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 420
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 421 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQP 478
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
++ M + DC ++ + + + + F + K E PE+ + + + +K
Sbjct: 479 PPAQSHRMDLMIDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADALVPMEIK 532
Query: 497 KGFT 500
G +
Sbjct: 533 PGIS 536
Score = 117 (46.2 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AG 183
G
Sbjct: 197 VG 198
Score = 48 (22.0 bits), Expect = 7.3e-10, Sum P(2) = 7.3e-10
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>CGD|CAL0004705 [details] [associations]
symbol:orf19.325 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
InterPro:IPR027075 CGD:CAL0004705 GO:GO:0042493 EMBL:AACQ01000027
EMBL:AACQ01000026 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_720020.1 RefSeq:XP_720152.1
ProteinModelPortal:Q5AEE3 STRING:Q5AEE3 GeneID:3638181
GeneID:3638320 KEGG:cal:CaO19.325 KEGG:cal:CaO19.7957
Uniprot:Q5AEE3
Length = 931
Score = 187 (70.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 57/252 (22%), Positives = 118/252 (46%)
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEV--NGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
V+ + + +++ DK+ +L + Q++ + N + Y AGH LG +++ RV+
Sbjct: 112 VDSAILELDEVDNWFDKVNLLKYQQSLNLFDNKVVVTPYNAGHSLGGTFWLITKRIDRVI 171
Query: 188 YTGDYSREEDRHLRAAEL--PQF-SPDICIIESTYGVQLHQPRNI-----REKRFTDVIH 239
Y ++ +D L +A P +P + ++ T + ++ R ++F ++
Sbjct: 172 YAPAWNHSKDSFLNSASFISPSTGNPHLSLLRPTAFITATDMGSVMSHRKRTEKFLQLVD 231
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
+T++ GG ++P GR EL ++DE+ P IP+Y+ S K + Y + +L
Sbjct: 232 ATLANGGAAVLPTSLSGRFLELFHLIDEHLKGAP----IPVYFLSYSGTKILT-YASNLL 286
Query: 300 S-MNERIRNQFA--NSNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSG-LSRQLFD 354
M++ ++ +S PF + L + + GP +V S L+SG +S + F
Sbjct: 287 DWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELLKLSGPKIVFCSGIDLRSGDISAEAFQ 346
Query: 355 IWCSDKKNACVI 366
C+D+ ++
Sbjct: 347 YLCNDEHTTIIL 358
Score = 37 (18.1 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 402 YISFSAHADYAQTSTFLKELMPPNIILV 429
++ S D ++ L P N+IL+
Sbjct: 649 FVDLSGQVDLRSLGIIVQALKPYNLILL 676
>UNIPROTKB|Q5AEE3 [details] [associations]
symbol:CFT2 "Putative uncharacterized protein CFT2"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR027075 CGD:CAL0004705 GO:GO:0042493
EMBL:AACQ01000027 EMBL:AACQ01000026 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 RefSeq:XP_720020.1
RefSeq:XP_720152.1 ProteinModelPortal:Q5AEE3 STRING:Q5AEE3
GeneID:3638181 GeneID:3638320 KEGG:cal:CaO19.325
KEGG:cal:CaO19.7957 Uniprot:Q5AEE3
Length = 931
Score = 187 (70.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 57/252 (22%), Positives = 118/252 (46%)
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEV--NGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
V+ + + +++ DK+ +L + Q++ + N + Y AGH LG +++ RV+
Sbjct: 112 VDSAILELDEVDNWFDKVNLLKYQQSLNLFDNKVVVTPYNAGHSLGGTFWLITKRIDRVI 171
Query: 188 YTGDYSREEDRHLRAAEL--PQF-SPDICIIESTYGVQLHQPRNI-----REKRFTDVIH 239
Y ++ +D L +A P +P + ++ T + ++ R ++F ++
Sbjct: 172 YAPAWNHSKDSFLNSASFISPSTGNPHLSLLRPTAFITATDMGSVMSHRKRTEKFLQLVD 231
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
+T++ GG ++P GR EL ++DE+ P IP+Y+ S K + Y + +L
Sbjct: 232 ATLANGGAAVLPTSLSGRFLELFHLIDEHLKGAP----IPVYFLSYSGTKILT-YASNLL 286
Query: 300 S-MNERIRNQFA--NSNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSG-LSRQLFD 354
M++ ++ +S PF + L + + GP +V S L+SG +S + F
Sbjct: 287 DWMSKSFTKEWEELSSVPFNPSKVDLLLDPSELLKLSGPKIVFCSGIDLRSGDISAEAFQ 346
Query: 355 IWCSDKKNACVI 366
C+D+ ++
Sbjct: 347 YLCNDEHTTIIL 358
Score = 37 (18.1 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 402 YISFSAHADYAQTSTFLKELMPPNIILV 429
++ S D ++ L P N+IL+
Sbjct: 649 FVDLSGQVDLRSLGIIVQALKPYNLILL 676
>RGD|1311539 [details] [associations]
symbol:Ints9 "integrator complex subunit 9" species:10116
"Rattus norvegicus" [GO:0016180 "snRNA processing"
evidence=IEA;ISO] [GO:0032039 "integrator complex"
evidence=IEA;ISO] InterPro:IPR027074 RGD:1311539 InterPro:IPR022712
Pfam:PF10996 SMART:SM01027 GO:GO:0032039 GO:GO:0016180
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 IPI:IPI00362364
Ensembl:ENSRNOT00000018071 Uniprot:F1M365
Length = 659
Score = 170 (64.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 85/415 (20%), Positives = 175/415 (42%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 144 FIERVP-KAQSASLWKNKEIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 202
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 203 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 260
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I+ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 261 VLILTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 319
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
NIP Y+ SP+A + Q + L N++ + + PF + N + +
Sbjct: 320 -AGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSK-VYLPEPPFPHAELIQTNKLKHY 377
Query: 330 SDV-GP-SVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVT 387
+ G S P L +G F D + + G + +L I +EP + +
Sbjct: 378 RSIHGDFSHDFRQPCVLFTGHPSLRF----GDVVHFMELWG---KSSLNTVIFTEP-DFS 429
Query: 388 LMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ L PL M+ Y ++ Q S LKE+ P +++ + + ++ M
Sbjct: 430 YLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQPPPAQSHRMD 488
Query: 446 ELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFT 500
+ DC ++ + + + + F + K E PE+ +++ + +K G +
Sbjct: 489 LMIDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIKPGIS 537
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 15 CNVLKFKSTTIMLDCGL 31
>UNIPROTKB|F1MMA6 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9913
"Bos taurus" [GO:0032039 "integrator complex" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] InterPro:IPR027074
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 GO:GO:0032039
GO:GO:0016180 IPI:IPI00701634 UniGene:Bt.91042
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 OMA:PLAMKCV
EMBL:DAAA02021965 EMBL:DAAA02021964 Ensembl:ENSBTAT00000049079
ArrayExpress:F1MMA6 Uniprot:F1MMA6
Length = 658
Score = 169 (64.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 88/424 (20%), Positives = 179/424 (42%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 143 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 259
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I+ + P ++ + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 260 VLILTGLTQIPTANPDSMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 318
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
+IP Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 319 -AGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTK-VYLPEPPFPHAELIQTNKLKHY 376
Query: 321 SPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
++ DFS+ P VV L+ G ++W G + +L
Sbjct: 377 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 420
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 421 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQP 478
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
++ M + DC ++ + + + + F + K E PE+ +++ + +K
Sbjct: 479 PPAQSHRMDLMVDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIK 532
Query: 497 KGFT 500
G +
Sbjct: 533 PGIS 536
Score = 117 (46.2 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AG 183
G
Sbjct: 197 VG 198
Score = 48 (22.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>UNIPROTKB|Q2KJA6 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9913
"Bos taurus" [GO:0032039 "integrator complex" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] InterPro:IPR027074
GO:GO:0005634 eggNOG:COG1236 InterPro:IPR022712 Pfam:PF10996
SMART:SM01027 EMBL:BC105437 IPI:IPI00701634 RefSeq:NP_001039828.1
UniGene:Bt.91042 ProteinModelPortal:Q2KJA6 STRING:Q2KJA6
GeneID:533964 KEGG:bta:533964 CTD:55756 HOGENOM:HOG000045359
HOVERGEN:HBG081802 InParanoid:Q2KJA6 KO:K13146 OrthoDB:EOG415GCW
NextBio:20876211 PANTHER:PTHR11203:SF2 Uniprot:Q2KJA6
Length = 658
Score = 169 (64.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 88/424 (20%), Positives = 179/424 (42%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 143 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 259
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I+ + P ++ + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 260 VLILTGLTQIPTANPDSMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 318
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
+IP Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 319 -AGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTK-VYLPEPPFPHAELIQTNKLKHY 376
Query: 321 SPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
++ DFS+ P VV L+ G ++W G + +L
Sbjct: 377 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 420
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 421 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQP 478
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
++ M + DC ++ + + + + F + K E PE+ +++ + +K
Sbjct: 479 TPAQSHRMDLMVDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIK 532
Query: 497 KGFT 500
G +
Sbjct: 533 PGIS 536
Score = 117 (46.2 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AG 183
G
Sbjct: 197 VG 198
Score = 48 (22.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>MGI|MGI:1098533 [details] [associations]
symbol:Ints9 "integrator complex subunit 9" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016180 "snRNA processing"
evidence=ISO] [GO:0032039 "integrator complex" evidence=ISO]
InterPro:IPR027074 MGI:MGI:1098533 eggNOG:COG1236
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 GO:GO:0032039
GO:GO:0016180 CTD:55756 HOGENOM:HOG000045359 HOVERGEN:HBG081802
KO:K13146 OrthoDB:EOG415GCW PANTHER:PTHR11203:SF2
GeneTree:ENSGT00390000001445 EMBL:AK038979 EMBL:AK077634
EMBL:AK136992 EMBL:AK150195 EMBL:BC028953 EMBL:BC055700
IPI:IPI00223422 IPI:IPI00406798 RefSeq:NP_001240660.1
RefSeq:NP_700463.2 UniGene:Mm.71332 ProteinModelPortal:Q8K114
SMR:Q8K114 STRING:Q8K114 PhosphoSite:Q8K114 PaxDb:Q8K114
PRIDE:Q8K114 Ensembl:ENSMUST00000043914 GeneID:210925
KEGG:mmu:210925 UCSC:uc007uiv.1 UCSC:uc007uiw.1 InParanoid:Q8K114
NextBio:373083 Bgee:Q8K114 CleanEx:MM_INTS9 Genevestigator:Q8K114
Uniprot:Q8K114
Length = 658
Score = 167 (63.8 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 85/415 (20%), Positives = 174/415 (41%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 143 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 259
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I+ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 260 VLILTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 318
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
NIP Y+ SP+A + Q + L N++ + + PF + N + +
Sbjct: 319 -AGLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSK-VYLPEPPFPHAELIQTNKLKHY 376
Query: 330 SDV-GP-SVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVT 387
+ G S P L +G F D + + G + +L I +EP + +
Sbjct: 377 RSIHGDFSNDFRQPCVLFTGHPSLRF----GDVVHFMELWG---KSSLNTIIFTEP-DFS 428
Query: 388 LMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ L PL M+ Y ++ Q S LKE+ P +++ + + + M
Sbjct: 429 YLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQPPPAQAHRMD 487
Query: 446 ELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFT 500
+ DC ++ + + + + F + K E PE+ +++ + +K G +
Sbjct: 488 LMIDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIKPGIS 536
Score = 118 (46.6 bits), Expect = 0.00068, Sum P(2) = 0.00067
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTMQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AG 183
G
Sbjct: 197 VG 198
Score = 48 (22.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>UNIPROTKB|Q9NV88 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
[GO:0016180 "snRNA processing" evidence=IDA] [GO:0032039
"integrator complex" evidence=IDA] InterPro:IPR027074
eggNOG:COG1236 InterPro:IPR022712 Pfam:PF10996 SMART:SM01027
GO:GO:0032039 EMBL:U96629 GO:GO:0016180 CTD:55756
HOGENOM:HOG000045359 HOVERGEN:HBG081802 KO:K13146 OrthoDB:EOG415GCW
PANTHER:PTHR11203:SF2 OMA:PLAMKCV EMBL:AK001733 EMBL:AK298468
EMBL:AK300593 EMBL:AC040975 EMBL:AC131969 EMBL:BC025267
EMBL:BK005726 EMBL:BK005674 IPI:IPI00290514 IPI:IPI00871167
RefSeq:NP_001138631.1 RefSeq:NP_001166033.1 RefSeq:NP_060720.2
UniGene:Hs.162397 ProteinModelPortal:Q9NV88 SMR:Q9NV88
IntAct:Q9NV88 STRING:Q9NV88 PhosphoSite:Q9NV88 DMDM:119371246
PaxDb:Q9NV88 PRIDE:Q9NV88 DNASU:55756 Ensembl:ENST00000416984
Ensembl:ENST00000521022 Ensembl:ENST00000521777 GeneID:55756
KEGG:hsa:55756 UCSC:uc003xha.3 GeneCards:GC08M028625
HGNC:HGNC:25592 MIM:611352 neXtProt:NX_Q9NV88 PharmGKB:PA162392192
InParanoid:Q9NV88 PhylomeDB:Q9NV88 ChiTaRS:INTS9 GenomeRNAi:55756
NextBio:60763 ArrayExpress:Q9NV88 Bgee:Q9NV88 CleanEx:HS_INTS9
Genevestigator:Q9NV88 GermOnline:ENSG00000104299 Uniprot:Q9NV88
Length = 658
Score = 166 (63.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 86/424 (20%), Positives = 179/424 (42%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 143 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 259
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ ++ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 260 VLVLTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 318
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
++P+Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 319 -AGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSK-VYLPEPPFPHAELIQTNKLKHY 376
Query: 321 SPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
++ DFS+ P VV L+ G ++W G + +L
Sbjct: 377 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 420
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 421 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQP 478
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
++ M + DC ++ + + + + F + K E PE+ +++ + +K
Sbjct: 479 PPAQSHRMDLMIDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIK 532
Query: 497 KGFT 500
G +
Sbjct: 533 PGIS 536
Score = 117 (46.2 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AG 183
G
Sbjct: 197 VG 198
Score = 48 (22.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>UNIPROTKB|F1RJQ5 [details] [associations]
symbol:INTS9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032039 "integrator complex" evidence=IEA] [GO:0016180
"snRNA processing" evidence=IEA] InterPro:IPR027074
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 PANTHER:PTHR11203:SF2
GeneTree:ENSGT00390000001445 OMA:PLAMKCV EMBL:CU407017
Ensembl:ENSSSCT00000010615 Uniprot:F1RJQ5
Length = 576
Score = 167 (63.8 bits), Expect = 4.6e-09, P = 4.6e-09
Identities = 88/424 (20%), Positives = 178/424 (41%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 61 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQMVGYSQ 119
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 120 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 177
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I+ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 178 VLILTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 236
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
+IP Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 237 -AGLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTK-VYLPEPPFPHAELIQTNKLKHY 294
Query: 321 SPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
++ DFS+ P VV L+ G ++W G + +L
Sbjct: 295 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 338
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 339 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQP 396
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
++ M + DC ++ + + + + F + K E PE+ +++ + +K
Sbjct: 397 PPAQSHRMDLMIDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIK 450
Query: 497 KGFT 500
G +
Sbjct: 451 PGIS 454
>UNIPROTKB|H7BYQ6 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 PANTHER:PTHR11203:SF2
EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592 ChiTaRS:INTS9
ProteinModelPortal:H7BYQ6 Ensembl:ENST00000397363 Bgee:H7BYQ6
Uniprot:H7BYQ6
Length = 552
Score = 166 (63.5 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 86/424 (20%), Positives = 179/424 (42%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 37 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 95
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 96 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 153
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ ++ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 154 VLVLTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 212
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
++P+Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 213 -AGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSK-VYLPEPPFPHAELIQTNKLKHY 270
Query: 321 SPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
++ DFS+ P VV L+ G ++W G + +L
Sbjct: 271 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 314
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 315 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQP 372
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
++ M + DC ++ + + + + F + K E PE+ +++ + +K
Sbjct: 373 PPAQSHRMDLMIDCQPPAMSYRRAEVLALPFK-RRYEKI-----EIMPELADSLVPMEIK 426
Query: 497 KGFT 500
G +
Sbjct: 427 PGIS 430
>UNIPROTKB|G3XAN1 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
EMBL:CH471080 InterPro:IPR022712 Pfam:PF10996 SMART:SM01027
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 UniGene:Hs.162397
HGNC:HGNC:25592 ChiTaRS:INTS9 ProteinModelPortal:G3XAN1
Ensembl:ENST00000523303 ArrayExpress:G3XAN1 Bgee:G3XAN1
Uniprot:G3XAN1
Length = 525
Score = 162 (62.1 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 76/351 (21%), Positives = 150/351 (42%)
Query: 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ 154
F+E+ K + K I +LL + +VS + Q++N ++ KI+++ + Q
Sbjct: 143 FIERVP-KAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPD 211
+E+ G ++ ++G+ LG++ +++ +V Y S + + A L + D
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSD 259
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ ++ + P + + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 260 VLVLTGLTQIPTANPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS 318
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHI 320
++P+Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 319 -AGLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSK-VYLPEPPFPHAELIQTNKLKHY 376
Query: 321 SPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
++ DFS+ P VV L+ G ++W G + +L
Sbjct: 377 PSIHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELW-----------G---KSSLNTV 420
Query: 379 IISEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
I +EP + + + L PL M+ Y ++ Q S LKE+ P +++
Sbjct: 421 IFTEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVV 470
Score = 117 (46.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 39/122 (31%), Positives = 61/122 (50%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AG 183
G
Sbjct: 197 VG 198
Score = 48 (22.0 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>UNIPROTKB|Q5ZKK2 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9031
"Gallus gallus" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
eggNOG:COG1236 InterPro:IPR022712 Pfam:PF10996 SMART:SM01027
GO:GO:0032039 GO:GO:0016180 CTD:55756 HOGENOM:HOG000045359
HOVERGEN:HBG081802 KO:K13146 OrthoDB:EOG415GCW
PANTHER:PTHR11203:SF2 EMBL:AJ720082 IPI:IPI00651516
RefSeq:NP_001026271.1 UniGene:Gga.21113 ProteinModelPortal:Q5ZKK2
STRING:Q5ZKK2 Ensembl:ENSGALT00000026848 GeneID:422023
KEGG:gga:422023 GeneTree:ENSGT00390000001445 InParanoid:Q5ZKK2
OMA:PLAMKCV NextBio:20824712 Uniprot:Q5ZKK2
Length = 658
Score = 164 (62.8 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 74/344 (21%), Positives = 146/344 (42%)
Query: 102 KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG- 160
K + T K + +LL +VS+ + ++N ++ KI+++ + Q +E+ G
Sbjct: 149 KAQSASTWKNKEVQRLLPAPLKDAVEVSMWRKCYTMPEVNAALSKIQLVGYSQKIELFGA 208
Query: 161 IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS--REEDRHLRAAELPQFSPDICIIEST 218
++ ++G+ LG++ +++ +V Y S + + A L + D+ I+
Sbjct: 209 VQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLK--NSDVLILTGL 266
Query: 219 YGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI 278
+ P + + F + T+ GG VL+P + G +LL L +Y + N+
Sbjct: 267 TQIPTANPDGMVGE-FCSNLAMTVRNGGNVLVPCYPSGVIYDLLECLYQYIDS-AGLSNV 324
Query: 279 PIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHISPLNSID 327
P Y+ SP+A + Q + L N++ + + PF K KH ++
Sbjct: 325 PFYFISPVANSSLEFSQIFAEWLCHNKQTK-VYLPEPPFPHAELIQTNKLKHYPSIHG-- 381
Query: 328 DFSD--VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
DFS+ P V+ L+ G ++W G + +L I +EP +
Sbjct: 382 DFSNDFKQPCVIFTGHPSLRFGDVVHFMELW-----------G---KSSLNTVIFTEP-D 426
Query: 386 VTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
+ ++ L PL M+ Y ++ Q S LKE+ P +++
Sbjct: 427 FSYLDALAPYQPLAMKCVYCPIDTRLNFIQVSKLLKEVQPLHVV 470
Score = 48 (22.0 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>ZFIN|ZDB-GENE-061013-129 [details] [associations]
symbol:ints9 "integrator complex subunit 9"
species:7955 "Danio rerio" [GO:0016180 "snRNA processing"
evidence=IEA] [GO:0032039 "integrator complex" evidence=IEA]
InterPro:IPR027074 ZFIN:ZDB-GENE-061013-129 eggNOG:COG1236
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 CTD:55756
HOGENOM:HOG000045359 HOVERGEN:HBG081802 KO:K13146 OrthoDB:EOG415GCW
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445
EMBL:CABZ01076623 EMBL:CABZ01078246 EMBL:CABZ01078247
EMBL:CABZ01078248 EMBL:CABZ01078249 EMBL:BC124793 IPI:IPI00800641
RefSeq:NP_001070738.1 UniGene:Dr.116109 Ensembl:ENSDART00000097865
GeneID:768124 KEGG:dre:768124 InParanoid:Q08BB6 NextBio:20918446
Uniprot:Q08BB6
Length = 658
Score = 157 (60.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 91/394 (23%), Positives = 159/394 (40%)
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHAT-----KA 113
Y M ALPY E + T L L E F RV HA K
Sbjct: 104 YHCMMALPYITE-HTGFTGTVYATEPTLQIGRLL--MEELVAFMERVPKAHAASCWKNKE 160
Query: 114 IYKLL---LTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAG 169
I +LL L D V+V S + Q++N ++ K++++ + Q VE+ G ++ ++G
Sbjct: 161 IQRLLPGPLKDAVEVWSWS---KCYSLQEVNSALSKVQLVGYSQKVELFGAVQVTPLSSG 217
Query: 170 HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF-SPDICIIESTYGVQLHQPRN 228
+ LG++ +++ +V Y S H + E + D+ I+ + P
Sbjct: 218 YSLGSSNWIIQSHYEKVSYVSGSSLLTT-HPQPMEQSSLKNSDVLILTGLTQIPTANPDG 276
Query: 229 IREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAK 288
+ + F + T+ GG VL+P ++ G +LL L ++ + P Y+ SP+A
Sbjct: 277 MLGE-FCSNLAMTVRAGGNVLVPCYSSGVIYDLLECLYQFMDS-ANLGTTPFYFISPVAN 334
Query: 289 KCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHISPLNSIDDFSDV--GPS 335
+ Q + L N++ + + PF K KH ++ DFS P
Sbjct: 335 SSLEFSQIFAEWLCQNKQSK-VYLPEPPFPHAELIQTNKLKHYPSIHG--DFSSEFRQPC 391
Query: 336 VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA- 394
VV L+ G ++W N T+ I +EP + + ++ L
Sbjct: 392 VVFTGHPSLRFGDVVHFMELWGKSSLN-----------TI---IFTEP-DFSYLDALAPY 436
Query: 395 -PLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
PL M+ Y ++ Q S LK++ P +++
Sbjct: 437 QPLAMKCVYCPIDTRLNFHQVSKLLKDIQPLHVV 470
Score = 48 (22.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>WB|WBGene00017608 [details] [associations]
symbol:F19F10.12 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] InterPro:IPR027074 GO:GO:0009792 eggNOG:COG1236
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 KO:K13146
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 EMBL:FO080914
RefSeq:NP_504953.1 ProteinModelPortal:Q95ZM2 PaxDb:Q95ZM2
EnsemblMetazoa:F19F10.12 GeneID:179142 KEGG:cel:CELE_F19F10.12
UCSC:F19F10.12 CTD:179142 WormBase:F19F10.12 HOGENOM:HOG000199610
InParanoid:Q95ZM2 OMA:EFMERIE NextBio:904092 Uniprot:Q95ZM2
Length = 646
Score = 128 (50.1 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 60/278 (21%), Positives = 119/278 (42%)
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D++ + K+ L F+QT+++ IK +GH G+A + + + Y S
Sbjct: 178 DMHSCLAKVITLSFNQTIDLFRIKVTPVVSGHTYGSAYWTIKTENEQFAYLSA-SNPSAT 236
Query: 199 HLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
++ E P + D ++ S + + + I + + G VL+P +G
Sbjct: 237 DVKLMETAPLRAVDHILVTSLSRLVDTTAKEMGYS-LIKTITDVLKKHGSVLLPICPVGP 295
Query: 258 AQELL-LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-------F 309
E++ + D + + + PIY+ SP+AK +A+ M+E +N +
Sbjct: 296 IFEMIEAVSDIITTTNGIPLDTPIYFISPVAKSAIAMASISAEWMSESRQNAVYLPEEPY 355
Query: 310 ANSNPFKFKHISPLNSI-DDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
++SN K + +S+ FS P V+ AS L+ G + + ++ SD KNA +
Sbjct: 356 SHSNLIKSGRVKIYDSLYGSFSKEFKTPCVIFASHASLRIGDAAHMVEVLGSDPKNAVI- 414
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
V + L + EP + + P++ ++ + S
Sbjct: 415 ---VTDPDLPCEDVREPFRNLPIKFINIPMDFRMDFAS 449
Score = 75 (31.5 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK-VSK 127
D + ID +L++++ + LP++ E + F G++++T KLL+ + ++ +S+
Sbjct: 83 DMLKMDTIDAILVSNY--ESFVGLPFYTEGSGFSGKIYVTEIAYQYGKLLMEEMLEFISR 140
Query: 128 VSV 130
+ V
Sbjct: 141 IEV 143
>UNIPROTKB|E5RG70 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592
ChiTaRS:INTS9 IPI:IPI00974179 ProteinModelPortal:E5RG70 SMR:E5RG70
Ensembl:ENST00000523436 ArrayExpress:E5RG70 Bgee:E5RG70
Uniprot:E5RG70
Length = 300
Score = 140 (54.3 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 57/207 (27%), Positives = 95/207 (45%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
+ +V + L+ +DI R + VEV+ + CYT V +A+ + +
Sbjct: 143 FIERVPKAQSASLWKNKDIQRLLPS----PLKDAVEVSTWRR-CYTMQEV-NSALSKIQL 196
Query: 182 AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHST 241
G YS++ + A L + D+ ++ + P + + F + T
Sbjct: 197 VG--------YSQKIP--MDQASLK--NSDVLVLTGLTQIPTANPDGMVGE-FCSNLALT 243
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEY 268
+ GG VL+P + G +LL L +Y
Sbjct: 244 VRNGGNVLVPCYPSGVIYDLLECLYQY 270
Score = 48 (22.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>UNIPROTKB|E5RK47 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592
ChiTaRS:INTS9 IPI:IPI00976000 ProteinModelPortal:E5RK47 SMR:E5RK47
Ensembl:ENST00000518510 ArrayExpress:E5RK47 Bgee:E5RK47
Uniprot:E5RK47
Length = 170
Score = 112 (44.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 85 LPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVN 142
Query: 125 -VSKV--SVEDMLFDEQDINRS 143
+ +V + L+ +DI RS
Sbjct: 143 FIERVPKAQSASLWKNKDIQRS 164
Score = 48 (22.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 39 CVYMSYKGKTILFDCGI 55
C + +K TI+ DCG+
Sbjct: 14 CNVLKFKSTTIMLDCGL 30
>FB|FBgn0036570 [details] [associations]
symbol:IntS9 "Integrator 9" species:7227 "Drosophila
melanogaster" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0034472 "snRNA 3'-end processing" evidence=IDA]
[GO:0032039 "integrator complex" evidence=ISS] [GO:0016180 "snRNA
processing" evidence=ISS] InterPro:IPR027074 EMBL:AE014296
GO:GO:0006378 GO:GO:0005847 GO:GO:0006379 InterPro:IPR022712
Pfam:PF10996 SMART:SM01027 CTD:55756 KO:K13146
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 OMA:PLAMKCV
GO:GO:0034472 EMBL:AY058574 RefSeq:NP_648838.3 UniGene:Dm.977
SMR:Q95TS5 IntAct:Q95TS5 MINT:MINT-1734573
EnsemblMetazoa:FBtr0075495 GeneID:39763 KEGG:dme:Dmel_CG5222
UCSC:CG5222-RA FlyBase:FBgn0036570 InParanoid:Q95TS5
OrthoDB:EOG4FJ6QV GenomeRNAi:39763 NextBio:815254 Uniprot:Q95TS5
Length = 654
Score = 138 (53.6 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 100/476 (21%), Positives = 188/476 (39%)
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYK-- 116
Y M ALPY E + + T L +FLE+ V T ++K
Sbjct: 105 YLNMLALPYITE-NTGFKGKVYATEPTLQIGR---FFLEELVDYIEVSPKACTARLWKEK 160
Query: 117 --LLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWC-YTAGHVLG 173
LL + + + +F +D+ S+ K+ ++ + + +++ G ++G+ LG
Sbjct: 161 LHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDEKLDILGAFIATPVSSGYCLG 220
Query: 174 AAMFMVDIAGVRVLYTGDYSR--EEDRHLRAAELPQFSPDICIIES-TYGVQLHQPRNIR 230
++ +++ A ++ Y S R + + L D+ I+ T ++ +
Sbjct: 221 SSNWVLSTAHEKICYVSGSSTLTTHPRPINQSALKH--ADVLIMTGLTQAPTVNPDTKLG 278
Query: 231 EKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKC 290
E + TI G LIP + G +L L + N +N+P+++ SP+A
Sbjct: 279 ELCMNVAL--TIRNNGSALIPCYPSGVVYDLFECLTQNLEN-AGLNNVPMFFISPVADSS 335
Query: 291 MAVYQTYILS-MNERIRNQ-FANSNPF---------KFKHISPLNSIDDFS-DVG-PSVV 337
+A Y + ++ +N+ + +PF K KH + + S + FS D P VV
Sbjct: 336 LA-YSNILAEWLSSAKQNKVYLPDDPFPHAFYLRNNKLKHYNHVFS-EGFSKDFRQPCVV 393
Query: 338 MASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLN 397
L+ G + ++W ++ N+ + E + P + PL
Sbjct: 394 FCGHPSLRFGDAVHFIEMWGNNPNNSIIF----TEPDFPYLQVLAPFQ---------PLA 440
Query: 398 MQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITP 457
M+ Y +Y Q + +KEL P N++++ + L E D KIIT
Sbjct: 441 MKAFYCPIDTSLNYQQANKLIKELKP-NVLVIPEAYTKPHPSAPNLFIEQPD--KKIITF 497
Query: 458 KNCQSVEMYFNSEKMAKTI--GRLAEK-TPEVGETVSGILVKKGFTYQIMAPDDLH 510
K C + K+ + LA+K +P+ E +G+ T + D +H
Sbjct: 498 K-CGEIIRLPLKRKLDRIYITSELAQKISPK--EVAAGVTFST-LTGVLQVKDKVH 549
>UNIPROTKB|Q87XP2 [details] [associations]
symbol:PSPTO_4134 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG1236
HOGENOM:HOG000035995 OMA:STFGLPI InterPro:IPR026360
TIGRFAMs:TIGR04122 RefSeq:NP_793895.1 ProteinModelPortal:Q87XP2
GeneID:1185814 KEGG:pst:PSPTO_4134 PATRIC:19999765 KO:K07577
ProtClustDB:CLSK2517054 BioCyc:PSYR223283:GJIX-4198-MONOMER
Uniprot:Q87XP2
Length = 348
Score = 129 (50.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 39/134 (29%), Positives = 70/134 (52%)
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QDIN ++ L++ +T+ +G+K + AGHVLG+A ++ G + +GDY E D
Sbjct: 62 QDIN-----LQTLEYGETITHHGVKLSLHPAGHVLGSAQVRLEYEGEVWVASGDYKVEPD 116
Query: 198 RHLRAAELPQFSPDIC---IIESTYGVQLHQ--PRNIREKRFTDVIHSTISQGGRVLIPA 252
A F P C I EST+G+ +++ P++ + + +QG ++ A
Sbjct: 117 GTCAA-----FEPVRCQTFITESTFGLPIYRWAPQSQIFEGINEWWRGNAAQGKASVLFA 171
Query: 253 FALGRAQELLLILD 266
++ G+AQ +L +D
Sbjct: 172 YSFGKAQRILHGID 185
Score = 45 (20.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 71 IDP-SAIDVLLITHFHLDHA 89
IDP ++ +ITH H DHA
Sbjct: 20 IDPWRPVERAVITHAHGDHA 39
>TIGR_CMR|NSE_0829 [details] [associations]
symbol:NSE_0829 "metallo-beta-lactamase family, beta-CASP
subfamily" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR001279
InterPro:IPR004613 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:CP000237 GenomeReviews:CP000237_GR
InterPro:IPR011108 eggNOG:COG0595 PANTHER:PTHR11203:SF22
HOGENOM:HOG000280200 RefSeq:YP_506699.1 ProteinModelPortal:Q2GCU7
STRING:Q2GCU7 GeneID:3931644 KEGG:nse:NSE_0829 PATRIC:22681653
KO:K07021 OMA:MRDDDKL ProtClustDB:CLSK2528128
BioCyc:NSEN222891:GHFU-835-MONOMER Uniprot:Q2GCU7
Length = 542
Score = 124 (48.7 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 72/262 (27%), Positives = 112/262 (42%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAID-- 77
+ LI PLG E+G + YKG+ I+ DCG A A LP D + D S I+
Sbjct: 4 NNLIFLPLGGTGEIGMNVTLYGYKGRWIMIDCG---AGFADAELPGIDIVVADISFIEER 60
Query: 78 -----VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHAT-KAIYKLLLTDYVKVSKVSVE 131
++ITH H DH +LPY ++ V+ T T + K + D V+ VE
Sbjct: 61 KDDLLAIIITHIHEDHCGALPYLWDRLAVP--VYTTQFTANFLLKKIGRDKVQFPIHVVE 118
Query: 132 D-MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHV-LGAAMFMVDIAGVRVLYT 189
L D +++ I + H E+N I +TA V + + + +D V V T
Sbjct: 119 PGKLLHLGDF--TLEFINMT--HSVPEMNAIAI--HTADKVVIHSGDWKIDDDPV-VGKT 171
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG-GRV 248
D+ R E EL + + +ST V H R+ E + + IS G
Sbjct: 172 CDFKRLE-------ELSEKGVLAMVCDST-NVFSHG-RSDSESSLREPLMEVISSASGAC 222
Query: 249 LIPAFA--LGRAQELLLILDEY 268
++ F+ + R + + I +EY
Sbjct: 223 VVTLFSSNIARIETVTRIANEY 244
Score = 50 (22.7 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIIL-VHGES---HEMGRLKTKLMTELA 448
+ H + S H Y L +L+ P I++ VHGE+ HE + + E A
Sbjct: 355 RTHSVHVSGHP-YRDELKQLYQLLKPKILIPVHGENLHLHEHAKFALECGVESA 407
>TIGR_CMR|CHY_1157 [details] [associations]
symbol:CHY_1157 "metallo-beta-lactamase family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001279
InterPro:IPR004613 Pfam:PF00753 PIRSF:PIRSF004803 SMART:SM00849
Pfam:PF07521 GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003723 GO:GO:0016788 InterPro:IPR011108 eggNOG:COG0595
HOGENOM:HOG000280201 KO:K12574 PANTHER:PTHR11203:SF22
TIGRFAMs:TIGR00649 RefSeq:YP_360002.1 ProteinModelPortal:Q3ACY2
STRING:Q3ACY2 GeneID:3726430 KEGG:chy:CHY_1157 PATRIC:21275454
OMA:FLVDSTN BioCyc:CHYD246194:GJCN-1156-MONOMER Uniprot:Q3ACY2
Length = 554
Score = 114 (45.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 62/249 (24%), Positives = 106/249 (42%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGI-HPAYS--GM-AALP---YF 68
P+ ++G +L I PLG E+G++ + + Y I+ D G+ P G+ +P Y
Sbjct: 2 PI-KDG-RLQIIPLGGLGEIGKNMMVIKYNDAIIVIDAGLMFPEEELLGIDMVIPDMSYL 59
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
E + + +L+TH H DH +PYFL++ F V+ T T + L + + +
Sbjct: 60 IE-NKEKVKAVLLTHGHEDHIGGMPYFLKQ--FDVPVYGTRLTLGLLSAKLKE-AGIPRA 115
Query: 129 SVEDMLFDEQDINRSMDKIEVLDF-HQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
S+ +++ +N KIE + H + GI G V+ F +D V
Sbjct: 116 SL-NVVAPRDVLNIGPFKIEFIKVSHSIPDTVGIAVHT-PVGTVVHTGDFKLDPTPVDGK 173
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPR-NIREKRFTDVIHSTISQG- 245
T Y + AEL + + + +ST +P + EK + T
Sbjct: 174 VTDFY--------KLAELGEKGVLVLMSDST---NAERPGFTLSEKTVGNTFEETFRVAE 222
Query: 246 GRVLIPAFA 254
GR++I FA
Sbjct: 223 GRIIIATFA 231
Score = 57 (25.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 25/93 (26%), Positives = 37/93 (39%)
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
I S H + + L P + +HGE + + ++ EL I P+N
Sbjct: 362 IHVSGHPSQEELKLMINLLKPKYFVPIHGEYRHLIK-HAEIARELG------IKPQNIFV 414
Query: 463 VEMYFNSE--KMAKTIGRLAEKTPEVGETVSGI 493
VE N + + K GRLA K P V G+
Sbjct: 415 VE---NGQVLEFTKKSGRLAGKVPAGRVLVDGL 444
>UNIPROTKB|G4N6C6 [details] [associations]
symbol:MGG_06570 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005849 "mRNA cleavage factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0006379 "mRNA cleavage" evidence=ISS] InterPro:IPR027075
Pfam:PF07521 GO:GO:0006378 EMBL:CM001234 GO:GO:0005847
GO:GO:0006379 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 RefSeq:XP_003716967.1 EnsemblFungi:MGG_06570T0
GeneID:2684725 KEGG:mgr:MGG_06570 Uniprot:G4N6C6
Length = 962
Score = 107 (42.7 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 32/125 (25%), Positives = 52/125 (41%)
Query: 158 VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE------------- 204
+NG+ Y AGH LG ++ + ++Y D++ D A
Sbjct: 172 LNGLTITAYNAGHSLGGTIWHIQHGMESIVYAVDWNLARDNVYAGAAWMGGGHGGGGAEV 231
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
+ Q ++ ST + R R+K+ D + IS+GG VLIP + R EL +
Sbjct: 232 IEQLRKPTALVCSTRTAEGGLTRAARDKQLLDTMRMAISRGGTVLIPVDSSARVLELAYL 291
Query: 265 LDEYW 269
L+ W
Sbjct: 292 LEHAW 296
Score = 53 (23.7 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 13/57 (22%), Positives = 28/57 (49%)
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
+++ P ++ + T +N+++ I FS D + + + P +ILV G + E
Sbjct: 693 VVTGPAKL-VHTSTTVSVNLRLALIDFSGLHDRRSLAMLIPLIQPRKLILVAGSADE 748
Score = 53 (23.7 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 17/79 (21%), Positives = 36/79 (45%)
Query: 311 NSNPFKFKHISPLNS-------IDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ PF FK++ L+ ++ +D + V++A+ L+ G S+ + +D +N
Sbjct: 365 DGGPFDFKYLRLLDRKAQVLKLLEPSTDELRGKVILATDTSLEWGFSKDIISAIANDSRN 424
Query: 363 ACVIPGYVVEGTLAKTIIS 381
++P E + IS
Sbjct: 425 MVILPEKPAESSRDNPSIS 443
>UNIPROTKB|E2QVB2 [details] [associations]
symbol:INTS9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032039 "integrator complex" evidence=IEA]
[GO:0016180 "snRNA processing" evidence=IEA] InterPro:IPR027074
InterPro:IPR022712 Pfam:PF10996 SMART:SM01027 GO:GO:0032039
GO:GO:0016180 PANTHER:PTHR11203:SF2 Ensembl:ENSCAFT00000013124
Uniprot:E2QVB2
Length = 409
Score = 118 (46.6 bits), Expect = 0.00063, P = 0.00063
Identities = 63/275 (22%), Positives = 112/275 (40%)
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI-- 298
T+ GG VL+P + G +LL L +Y + NIP Y+ SP+A + Q +
Sbjct: 39 TVRNGGNVLVPCYPSGVIYDLLECLYQYIDS-AGLSNIPFYFISPVANSSLEFSQIFAEW 97
Query: 299 LSMNERIRNQFANSNPF---------KFKHISPLNSIDDFS-DVG-PSVVMASPGGLQSG 347
L N++ + + PF K KH L+ DFS D P VV L+ G
Sbjct: 98 LCHNKQTK-VYLPEPPFPHAELIQTNKLKHYPSLHG--DFSSDFRQPCVVFTGHPSLRFG 154
Query: 348 LSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA--PLNMQVHYISF 405
++W G + +L I +EP + + + L PL M+ Y
Sbjct: 155 DVVHFMELW-----------G---KSSLNTVIFTEP-DFSYLEALAPYQPLAMKCIYCPI 199
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
++ Q S LKE+ P +++ + + ++ M + DC ++ + + + +
Sbjct: 200 DTRLNFIQVSKLLKEVQPLHVVCPE-QYTQPPPAQSHRMDLMIDCQPPAMSYRRAEVLAL 258
Query: 466 YFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFT 500
F + K E PE+ + + + +K G +
Sbjct: 259 PFK-RRYEKI-----EIMPELADALVPMEIKPGIS 287
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.404 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 525 525 0.00091 119 3 11 22 0.37 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 96
No. of states in DFA: 616 (65 KB)
Total size of DFA: 299 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 42.14u 0.12s 42.26t Elapsed: 00:00:02
Total cpu time: 42.17u 0.12s 42.29t Elapsed: 00:00:02
Start: Mon May 20 16:05:06 2013 End: Mon May 20 16:05:08 2013