BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044504
(525 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/526 (91%), Positives = 510/526 (96%), Gaps = 1/526 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREG-DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MAS GQ SLKRRDAPV+REG DQL +TPLGAGNEVGRSCVYMS+KGKT+LFDCGIHPAY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHPAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL 119
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF+GRVFMTHATKAIYKLLL
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLL 120
Query: 120 TDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMV 179
TDYVKVSKVSVEDMLFDE+DINRSMDKIEV+DFHQTV+VNGIKFWCYTAGHVLGAAMFMV
Sbjct: 121 TDYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMV 180
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
DIAGVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR+IREKRFTDVIH
Sbjct: 181 DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIH 240
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
STIS GGRVLIPAFALGRAQELLLILDEYWSNHPE HNIP+YYASPLAKKCM VYQTYIL
Sbjct: 241 STISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPVYYASPLAKKCMTVYQTYIL 300
Query: 300 SMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
SMNERIRNQFA+SNPFKFKHISPLNSI+DF+DVGPSVVMA+PGGLQSGLSRQLFD+WCSD
Sbjct: 301 SMNERIRNQFADSNPFKFKHISPLNSIEDFTDVGPSVVMATPGGLQSGLSRQLFDMWCSD 360
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
KKNACVIPG++VEGTLAKTII+EPKEV LMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
Sbjct: 361 KKNACVIPGFLVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 420
Query: 420 ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRL 479
ELMPPNIILVHGE++EMGRLK KL+TE D NTKIITPKNCQSVEMYFNSEKMAKT G+L
Sbjct: 421 ELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEMYFNSEKMAKTTGKL 480
Query: 480 AEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
AE+TP+VGETVSGILVKKGFTYQIMAP+DLH+FSQLST NITQRIT
Sbjct: 481 AERTPDVGETVSGILVKKGFTYQIMAPEDLHVFSQLSTGNITQRIT 526
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 1028 bits (2657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/525 (91%), Positives = 509/525 (96%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS G P SLKR D+ ++REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+
Sbjct: 61 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 121 DYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 180
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR++REKRFTDVIHS
Sbjct: 181 IAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHS 240
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPE HNIPIYYASPLAK+CMAVYQTYI S
Sbjct: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINS 300
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFANSNPF FKHISPL SI++F+DVGPSVVMASP GLQSGLSRQLFD+WCSDK
Sbjct: 301 MNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDK 360
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KNACVIPGYVVEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHAD+AQTSTFLKE
Sbjct: 361 KNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKE 420
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
LMPPNIILVHGE++EMGRLK KL+T+ AD NTKII+PKNCQSVEMYFNSEKMAKTIGRLA
Sbjct: 421 LMPPNIILVHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLA 480
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
EKTP VGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTAN+TQRIT
Sbjct: 481 EKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRIT 525
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 1023 bits (2644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/526 (91%), Positives = 507/526 (96%), Gaps = 1/526 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREG-DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MAS GQ SLKRRDAPV+REG DQL +TPLGAGNEVGRSCVYMS+KGKT+LFDCGIH AY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHLAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL 119
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTF+GRVFMTHATKAI+KLLL
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFRGRVFMTHATKAIFKLLL 120
Query: 120 TDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMV 179
T+YVKVSKVSVEDMLFDE+DINRSMDKIEV+DFHQTV+VNGIKFWCYTAGHVLGAAMFMV
Sbjct: 121 TNYVKVSKVSVEDMLFDEKDINRSMDKIEVIDFHQTVDVNGIKFWCYTAGHVLGAAMFMV 180
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
DIAGVRVLYTGDYSREEDRHL AAE+PQFSPDICIIESTYGVQLHQPR++REKRFTDVIH
Sbjct: 181 DIAGVRVLYTGDYSREEDRHLCAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIH 240
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
STIS GGRVLIPAFALGRAQELLLILDEYWSNHPE HNIPIYYASPLAKKCM VYQTYIL
Sbjct: 241 STISLGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKKCMTVYQTYIL 300
Query: 300 SMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
SMNERIRNQFANSNPFKFKHISPLNSI+DFSDVGPSVVMASPGGLQSGLSRQLFD+WCSD
Sbjct: 301 SMNERIRNQFANSNPFKFKHISPLNSIEDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSD 360
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
KKNACVIPGYVVEGTLAKTII+EPKEV LMNGLTAPLNMQVHYISFSAHADYAQTSTFLK
Sbjct: 361 KKNACVIPGYVVEGTLAKTIINEPKEVQLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 420
Query: 420 ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRL 479
ELMPPNIILVHGE++EMGRLK KL+TE D NTKIITPKNCQSVE+YFNSEKMAKTIG+L
Sbjct: 421 ELMPPNIILVHGEANEMGRLKQKLITEFTDGNTKIITPKNCQSVEIYFNSEKMAKTIGKL 480
Query: 480 AEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
AE+TP VGETVSGILVKKGFTYQIMAP DLH+FSQLST NITQRIT
Sbjct: 481 AERTPNVGETVSGILVKKGFTYQIMAPGDLHVFSQLSTGNITQRIT 526
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 1019 bits (2634), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/517 (92%), Positives = 504/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKR D+ ++REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF
Sbjct: 2 SLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 61
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+DYVKVSKV
Sbjct: 62 DEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKV 121
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVRVLY
Sbjct: 122 SVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLY 181
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR++REKRFTDVIHSTISQGGRV
Sbjct: 182 TGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHSTISQGGRV 241
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYWSNHPE HNIPIYYASPLAK+CMAVYQTYI SMNERIRNQ
Sbjct: 242 LIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINSMNERIRNQ 301
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPL SI++F+DVGPSVVMASP GLQSGLSRQLFD+WCSDKKNACVIPG
Sbjct: 302 FANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDKKNACVIPG 361
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
YVVEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHAD+AQTSTFLKELMPPNIIL
Sbjct: 362 YVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKELMPPNIIL 421
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EMGRLK KL+T+ AD NTKII+PKNCQSVEMYFNSEKMAKTIGRLAEKTP VGE
Sbjct: 422 VHGEANEMGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLAEKTPGVGE 481
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSG+LVKKGFTYQIMAPDDLH+FSQLSTAN+TQRIT
Sbjct: 482 TVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRIT 518
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 1016 bits (2627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/525 (91%), Positives = 507/525 (96%), Gaps = 1/525 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS G SLKR D+ ++R GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 59
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+
Sbjct: 60 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 119
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 120 DYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 179
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVRVLYTGDYSREEDRHLRAAE+PQF PDICIIESTYGVQLHQPR++REKRFTDVIHS
Sbjct: 180 IAGVRVLYTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHS 239
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TISQGGRVLIPA+ALGRAQELLLILDEYWSNHPE HN+PIYYASPLAK+CMAVYQTYI S
Sbjct: 240 TISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINS 299
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFANSNPF FKHISPL SI++F+DVGPSVVMASPGGLQSGLSRQLFD+WCSDK
Sbjct: 300 MNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPGGLQSGLSRQLFDMWCSDK 359
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KNACVIPGYVV GTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHAD+AQTSTFLKE
Sbjct: 360 KNACVIPGYVVGGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADFAQTSTFLKE 419
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
LMPPNIILVHGE++EMGRLK KL+T+ ADCNTKII+PKNCQSVEMYFNSEKMAKTIGRLA
Sbjct: 420 LMPPNIILVHGEANEMGRLKQKLITQFADCNTKIISPKNCQSVEMYFNSEKMAKTIGRLA 479
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
EKTPEVGETVSG+LVKKGFTYQIMAPDDLH+F QLSTAN+TQRIT
Sbjct: 480 EKTPEVGETVSGLLVKKGFTYQIMAPDDLHVFWQLSTANVTQRIT 524
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/517 (90%), Positives = 503/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL+TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLAEKTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/517 (90%), Positives = 503/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL+TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLAEKTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/517 (90%), Positives = 501/517 (96%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLA KTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLFTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAGKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/515 (87%), Positives = 489/515 (94%), Gaps = 2/515 (0%)
Query: 11 KRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 70
+R +A SRE DQLI+TPLGAGNEVGRSCVYMSYKGKT+LFDCGIHPAYSGMAALPYFDE
Sbjct: 8 RRENARSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDE 67
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
IDPS +DVLLITHFHLDHAASLPYFLEKTTF+GRVFMT+ATKAIYKLLL+D+VKVSKVSV
Sbjct: 68 IDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVSV 127
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
EDMLFDEQDINRSMDKIEV+DFHQTVEVNGI+FWCYTAGHVLGAAMFMVDIAGVRVLYTG
Sbjct: 128 EDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTG 187
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSREEDRHLRAAE PQFSPD+CIIESTYGVQ HQPR+ REKRFTDVIHSTISQGGRVLI
Sbjct: 188 DYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVLI 247
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PAFALGRAQELLLILDEYW+NHPE NIPIYYASPLAKKC+ VY+TY LSMN+RI+N A
Sbjct: 248 PAFALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRIQN--A 305
Query: 311 NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
SNPF FKH+S L+SI+ F DVGPSVVMASPGGLQSGLSRQLFD+WCSDKKN+CV+PGYV
Sbjct: 306 KSNPFSFKHVSALSSIEVFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVLPGYV 365
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHAD AQTS FL+EL PPNIILVH
Sbjct: 366 VEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILVH 425
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETV 490
GE++EMGRLK KL+++ AD NTKI+TPKNCQSVEMYFNS+KMAKTIG+LAEKTPEVGETV
Sbjct: 426 GEANEMGRLKQKLISQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTPEVGETV 485
Query: 491 SGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
SG+LVKKGFTYQIMA DDLH+FSQLSTANITQRIT
Sbjct: 486 SGLLVKKGFTYQIMAADDLHVFSQLSTANITQRIT 520
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/513 (86%), Positives = 482/513 (93%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R A REGDQLIITPLGAGNEVGRSCVYMS+KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 19 KRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEI 78
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 79 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 138
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVRVLYTGD
Sbjct: 139 DMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 198
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSREEDRHL+AAELPQFSPDICIIESTYGVQ HQPR++REKRFTDVIH+T+SQGGRVLIP
Sbjct: 199 YSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGRVLIP 258
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
AFALGRAQELLLILDEYW+NHPE H IPIYYASPLAKKCMAVYQTYI SMNERIRNQFA
Sbjct: 259 AFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQ 318
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPF FKHI LNSID+F DVGPSVVMASPGGLQSGLSRQLFD WC+DKKN+CVIPGYVV
Sbjct: 319 SNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVIPGYVV 378
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAKTII+EP+EVTL NGLTAPL+MQVHYISFSAHAD+ QTSTFL EL PPNI+LVHG
Sbjct: 379 EGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSTFLDELQPPNIVLVHG 438
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
E++EM RLK KL+++ N K++ PKNCQSVEMYF+SEKMAKTIGRLAEK PE GE+V+
Sbjct: 439 EANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMAKTIGRLAEKVPEAGESVN 498
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
G+LVKKGFTYQIMAP+DL +++QLSTANITQRI
Sbjct: 499 GLLVKKGFTYQIMAPEDLRVYTQLSTANITQRI 531
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/513 (86%), Positives = 482/513 (93%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R A REGDQLIITPLGAGNEVGRSCVYMS+KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 19 KRQASGGREGDQLIITPLGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEI 78
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 79 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 138
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVRVLYTGD
Sbjct: 139 DMLFDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 198
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSREEDRHL+AAELPQFSPDICIIESTYGVQ HQPR++REKRFTDVIH+T+SQGGRVLIP
Sbjct: 199 YSREEDRHLKAAELPQFSPDICIIESTYGVQQHQPRHVREKRFTDVIHTTVSQGGRVLIP 258
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
AFALGRAQELLLILDEYW+NHPE H IPIYYASPLAKKCMAVYQTYI SMNERIRNQFA
Sbjct: 259 AFALGRAQELLLILDEYWANHPELHKIPIYYASPLAKKCMAVYQTYINSMNERIRNQFAQ 318
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPF FKHI LNSID+F DVGPSVVMASPGGLQSGLSRQLFD WC+DKKN+CVIPGYVV
Sbjct: 319 SNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNSCVIPGYVV 378
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAKTII+EP+EVTL NGLTAPL+MQVHYISFSAHAD+ QTSTFL EL PPNI+LVHG
Sbjct: 379 EGTLAKTIINEPREVTLANGLTAPLHMQVHYISFSAHADFPQTSTFLDELQPPNIVLVHG 438
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
E++EM RLK KL+++ N K++ PKNCQSVEMYF+SEKMAKTIGRLAEK PE GE+V+
Sbjct: 439 EANEMSRLKQKLISQFDGTNIKVVNPKNCQSVEMYFSSEKMAKTIGRLAEKVPEAGESVN 498
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
G+LVKKGFTYQIMAP+DL +++QLSTANITQRI
Sbjct: 499 GLLVKKGFTYQIMAPEDLRVYTQLSTANITQRI 531
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/521 (86%), Positives = 492/521 (94%), Gaps = 6/521 (1%)
Query: 9 SLKRRDA---PVSREG-DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA 64
S+K+R++ ++RE DQLI+TPLGAGNEVGRSCVYM+YKGKT+LFDCGIHP YSGMAA
Sbjct: 3 SVKKRESNGGTINRETEDQLIVTPLGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAA 62
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LPYFDEIDPS +DVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIYKLLL+DYVK
Sbjct: 63 LPYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVK 122
Query: 125 VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
VSKVSV+DML+DEQDINRSMDKIEV+DFHQTVEVNGI+FWCYTAGHVLGAAMFMVDIAGV
Sbjct: 123 VSKVSVDDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVDIAGV 182
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
RVLYTGDYSREEDRHLRAAE PQFSPD+CIIESTYGVQ HQPR+ REKRFTDVIHSTISQ
Sbjct: 183 RVLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQ 242
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GGRVLIPA+ALGRAQELLLILDEYW+NHPE NIPIYYASPLAKKC+ VY+TY LSMN+R
Sbjct: 243 GGRVLIPAYALGRAQELLLILDEYWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDR 302
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
I+N A SNPF FKHIS L+SID F DVGPSVVMASPGGLQSGLSRQLFD+WCSDKKN+C
Sbjct: 303 IQN--AKSNPFAFKHISALSSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSC 360
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
VIPGYVVEGTLAKTI++EPKEVTLMNGL+APL+MQVHYISFSAHAD AQTS FL+EL PP
Sbjct: 361 VIPGYVVEGTLAKTILNEPKEVTLMNGLSAPLHMQVHYISFSAHADSAQTSAFLEELNPP 420
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
NIILVHG ++EMGRLK KLMT+ AD NTKI+TPKNCQSVEMYFNS+KMAKTIG+LAEKTP
Sbjct: 421 NIILVHGAANEMGRLKQKLMTQFADRNTKILTPKNCQSVEMYFNSQKMAKTIGKLAEKTP 480
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
EVGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTAN+TQRIT
Sbjct: 481 EVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRIT 521
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/524 (84%), Positives = 486/524 (92%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R A REGDQ+++TPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 13 MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 72
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+
Sbjct: 73 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 132
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 133 DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 192
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+LYTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR++REKRFTD IH+
Sbjct: 193 IAGVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHN 252
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T+SQGGRVLIPAFALGRAQELLLILDEYWSNHPE H IPIYYASPLAKKCMAVYQTYI S
Sbjct: 253 TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS 312
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFA SNPF FKHI PLNSID+F DVGPSVVMASPG LQSGLSRQLFD WC+DK
Sbjct: 313 MNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK 372
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KN CVIPGY VEG+LAKTII+EP+EVTL NGLTAPLNMQ+ YISFSAHAD+ QTS FL E
Sbjct: 373 KNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTSGFLGE 432
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PPNIILVHGE++EMGRLK KL+T+ NTKI++PKNCQSVEMYF+SEKMAKTIGRLA
Sbjct: 433 LCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMYFSSEKMAKTIGRLA 492
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
EK PEVG++VSG+LVKKGFTYQIMAP+DL +++QLSTANITQRI
Sbjct: 493 EKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRI 536
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/524 (84%), Positives = 485/524 (92%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R A REGDQ+++TPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 13 MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 72
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+
Sbjct: 73 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 132
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 133 DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 192
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+LYTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR++REKRFTD IH+
Sbjct: 193 IAGVRILYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHN 252
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T+SQGGRVLIPAFALGRAQELLLILDEYWSNHPE H IPIYYASPLAKKCMAVYQTYI S
Sbjct: 253 TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS 312
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFA SNPF FKHI PLNSID+F DVGPSVVMASPG LQSGLSRQLFD WC+DK
Sbjct: 313 MNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK 372
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KN CVIPGY VEG+LAKTII+EP+EVTL NGLTAPLNMQ+ YISFSAHAD+ QTS FL E
Sbjct: 373 KNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTSGFLGE 432
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PPNIILVHGE++EMGRLK KL+T+ NTKI++PKNCQSVEMYF+SEKMA TIGRLA
Sbjct: 433 LCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMYFSSEKMAMTIGRLA 492
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
EK PEVG++VSG+LVKKGFTYQIMAP+DL +++QLSTANITQRI
Sbjct: 493 EKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRI 536
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/524 (84%), Positives = 485/524 (92%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS P +R A REGDQ+++TPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 13 MASAATAPPAGKRPATGGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 72
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+
Sbjct: 73 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 132
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 133 DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 192
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+ YTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR++REKRFTD IH+
Sbjct: 193 IAGVRIRYTGDYSREEDRHLKAAEIPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHN 252
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T+SQGGRVLIPAFALGRAQELLLILDEYWSNHPE H IPIYYASPLAKKCMAVYQTYI S
Sbjct: 253 TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS 312
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFA SNPF FKHI PLNSID+F DVGPSVVMASPG LQSGLSRQLFD WC+DK
Sbjct: 313 MNERIRNQFAQSNPFHFKHIDPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK 372
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KN CVIPGY VEG+LAKTII+EP+EVTL NGLTAPLNMQ+ YISFSAHAD+ QTS FL E
Sbjct: 373 KNTCVIPGYAVEGSLAKTIINEPREVTLANGLTAPLNMQIFYISFSAHADFPQTSGFLGE 432
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PPNIILVHGE++EMGRLK KL+T+ NTKI++PKNCQSVEMYF+SEKMAKTIGRLA
Sbjct: 433 LCPPNIILVHGEANEMGRLKQKLITQFDGTNTKIVSPKNCQSVEMYFSSEKMAKTIGRLA 492
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
EK PEVG++VSG+LVKKGFTYQIMAP+DL +++QLSTANITQRI
Sbjct: 493 EKVPEVGDSVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRI 536
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/524 (83%), Positives = 486/524 (92%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASV P +R REGDQ++ITPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 76 MASVATAPPAGKRPTSGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 135
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+
Sbjct: 136 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 195
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 196 DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 255
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+LYTGDYSREEDRHL+AAE+PQFSPD+CI+ESTYGVQ HQPR++REKRFTD IH+
Sbjct: 256 IAGVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHN 315
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T+SQGGRVLIPAFALGRAQELLLILDEYWSNHPE H IPIYYASPLAKKCMAVYQTYI S
Sbjct: 316 TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS 375
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFA SNPF FKHI PLNSID+F DVGPSVVMASPG LQSGLSRQLFD WC+DK
Sbjct: 376 MNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGTLQSGLSRQLFDKWCTDK 435
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KN CVIPG+V+EGTL+KTII+EP+EVTL NGLTAPL+MQ+ YISFSAHAD+ QTS FL E
Sbjct: 436 KNTCVIPGFVIEGTLSKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFPQTSAFLDE 495
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PPNIILVHGE++EMGRLK KL+T+ N KI++PKNCQSVEMYF+SEKMAKTIGRLA
Sbjct: 496 LRPPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSPKNCQSVEMYFSSEKMAKTIGRLA 555
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
EK PEVGE+VSG+LVKKGFTYQIMAP+DL +++QLSTANITQRI
Sbjct: 556 EKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTANITQRI 599
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/525 (83%), Positives = 483/525 (92%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASV P +R A REGD +++TPLGAG EVGRSCV+MS+KG+T+LFDCGIHPAYS
Sbjct: 1 MASVATAPPAGKRPASGEREGDHMVVTPLGAGGEVGRSCVHMSFKGRTVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+
Sbjct: 61 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDMLFDEQD+ RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 121 DYVKVSKVSVEDMLFDEQDVIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 180
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+LYTGDYSREEDRHL+AAE+PQFSPDICIIESTYGVQ HQPR++REKRFTD IH+
Sbjct: 181 IAGVRILYTGDYSREEDRHLKAAEVPQFSPDICIIESTYGVQQHQPRHVREKRFTDAIHN 240
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T+SQGGRVLIPA+ALGRAQELLLILDEYWSNHPE H IPIYYASPLAKKCMAVYQTYI S
Sbjct: 241 TVSQGGRVLIPAYALGRAQELLLILDEYWSNHPELHKIPIYYASPLAKKCMAVYQTYINS 300
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFA SNPF FKHI PLNSID+F DVGPSVVMASPG LQSGLSRQLFD WC+DK
Sbjct: 301 MNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK 360
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KN CVIPG+ VEG+L KTII+EP+EVTL NGLTAPL+MQ+ YISFSAHAD+ QTS FL E
Sbjct: 361 KNTCVIPGFAVEGSLVKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFLQTSGFLDE 420
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PPNIILVHGE++EMGRLK KL T+ NTKI++PKNCQSVEMYF+SEKMAKTIGRLA
Sbjct: 421 LRPPNIILVHGEANEMGRLKQKLTTQFDGTNTKIVSPKNCQSVEMYFSSEKMAKTIGRLA 480
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
EK PEVGE+VSG+LVKKGFTYQIMAP+DL +++QLST NITQRI+
Sbjct: 481 EKVPEVGESVSGLLVKKGFTYQIMAPEDLRVYTQLSTTNITQRIS 525
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/516 (85%), Positives = 484/516 (93%), Gaps = 2/516 (0%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
+KRR++ + + +I+TPLGAGNEVGRSCVYMSYKGK+ILFDCGIH +SGM+ALPYFD
Sbjct: 6 VKRRESVREEDDEVMIVTPLGAGNEVGRSCVYMSYKGKSILFDCGIHLGFSGMSALPYFD 65
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
EIDPS +DVLLITHFHLDHAASLPYFLEKTTF+GRVFMT+ATKAIYKLLL+D+VKVSKVS
Sbjct: 66 EIDPSTLDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKVSKVS 125
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
VEDMLFDEQDINRSMDKIEV+DFHQTVEVNGI+FWCY AGHVLGAAMFMVDIAGVRVLYT
Sbjct: 126 VEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYAAGHVLGAAMFMVDIAGVRVLYT 185
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYSREEDRHLRAAE+PQFSPD+CIIESTYGVQ HQPR+ REKRFTDVIHSTISQGGRVL
Sbjct: 186 GDYSREEDRHLRAAEIPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQGGRVL 245
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IPA+ALGRAQELLLILDEYW+NHPE HNIPIYYASPLAKKC+ VY+TY LSMN+R++N
Sbjct: 246 IPAYALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCLTVYETYTLSMNDRVQN-- 303
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A SNPF FKHIS L+SI+ F DVGPSVVMASPGGLQSGLSRQLFD WCSDKKN CV+PG+
Sbjct: 304 AKSNPFSFKHISALSSIEVFKDVGPSVVMASPGGLQSGLSRQLFDKWCSDKKNTCVLPGF 363
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VVEGTLAKTI++EPKEVTLMNGL+APLNMQVHYISFSAHAD AQTS FL+EL PPNIILV
Sbjct: 364 VVEGTLAKTIMTEPKEVTLMNGLSAPLNMQVHYISFSAHADSAQTSAFLEELNPPNIILV 423
Query: 430 HGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
HGE+++MGRLK KL ++ AD NTKI+TPKNCQSVEM+FNS+KMAKTIGRLAEKTPEVGET
Sbjct: 424 HGEANQMGRLKQKLTSQFADRNTKILTPKNCQSVEMHFNSQKMAKTIGRLAEKTPEVGET 483
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
VSG+LVKKGFTYQIMAPDDLH+FSQLST NITQRIT
Sbjct: 484 VSGLLVKKGFTYQIMAPDDLHVFSQLSTTNITQRIT 519
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/513 (85%), Positives = 476/513 (92%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R A REGDQ+++TPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 16 KRPASSGREGDQMVVTPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEI 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+DYVKVSKVSVE
Sbjct: 76 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSVE 135
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DML+DE DI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGD
Sbjct: 136 DMLYDESDIARSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGD 195
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSREEDRHLRAAELPQFSPDICIIESTYGVQ HQPR IREKRFT+VIH+T+SQGGRVLIP
Sbjct: 196 YSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIIREKRFTEVIHNTVSQGGRVLIP 255
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
AFALGRAQELLLILDEYWS HPE H IPIYYASPLAK+CMAVYQTYI SMNERIRNQFA
Sbjct: 256 AFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMNERIRNQFAQ 315
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPF FKHI LNSID+F DVGPSVVMASPGGLQSGLSRQLFD WC+DKKNACVIPGYVV
Sbjct: 316 SNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNACVIPGYVV 375
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAKTII+EP+EVTL NGLTAPL+M VHYISFSAHAD+ QTS FL EL PPNIILVHG
Sbjct: 376 EGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTSNFLDELRPPNIILVHG 435
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
E++EM RLK KL+T+ NTKI++PKNCQSVEMYF EKMAKTIGRLAE+ PE GE+ S
Sbjct: 436 EANEMSRLKQKLITQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTIGRLAEQVPEGGESSS 495
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
G+LVKKGFTYQIMAP+DL +F+QLSTANI QRI
Sbjct: 496 GLLVKKGFTYQIMAPEDLRVFTQLSTANIIQRI 528
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 942 bits (2436), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/524 (83%), Positives = 486/524 (92%), Gaps = 3/524 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASV P+ KR A REGDQ++ITPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYS
Sbjct: 1 MASVA--PAGKR-PASGGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYS 57
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPSAIDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+
Sbjct: 58 GMAALPYFDEIDPSAIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLS 117
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDMLFDEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 118 DYVKVSKVSVEDMLFDEQDIIRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 177
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+LYTGDYSREEDRHL+AAE+PQFSPD+CI+ESTYGVQ HQPR++REKRFTD IH+
Sbjct: 178 IAGVRILYTGDYSREEDRHLKAAEIPQFSPDVCIVESTYGVQQHQPRHVREKRFTDAIHN 237
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T+SQGGRVLIPAFALGRAQELLLILDEYWSNHPE IPIYYASPLAKKCMAVYQTYI S
Sbjct: 238 TVSQGGRVLIPAFALGRAQELLLILDEYWSNHPELQKIPIYYASPLAKKCMAVYQTYINS 297
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFA SNPF FKHI PLNSID+F DVGPSVVMASPG LQSGLSRQLFD WC+DK
Sbjct: 298 MNERIRNQFAQSNPFHFKHIEPLNSIDNFHDVGPSVVMASPGSLQSGLSRQLFDKWCTDK 357
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KN CVIPGYV+EGTLAKTII+EP+EVTL NGLTAPL+MQ+ YISFSAHAD+ QTS FL E
Sbjct: 358 KNTCVIPGYVIEGTLAKTIINEPREVTLANGLTAPLHMQIFYISFSAHADFPQTSGFLDE 417
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PPNIILVHGE++EMGRLK KL+T+ N KI++PKNCQSVEMYF+SEKMAKTIGRLA
Sbjct: 418 LRPPNIILVHGEANEMGRLKQKLITQFDGTNIKIVSPKNCQSVEMYFSSEKMAKTIGRLA 477
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
EK P+VGE VSG+LVKKGFTYQIMAP+DL +++QLSTAN+TQ+I
Sbjct: 478 EKVPDVGEPVSGLLVKKGFTYQIMAPEDLRVYTQLSTANVTQQI 521
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/513 (84%), Positives = 473/513 (92%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R A REGDQ++ITPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAY+GMAALPYFDEI
Sbjct: 16 KRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYTGMAALPYFDEI 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+DYVKVSKVSVE
Sbjct: 76 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKVSKVSVE 135
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DMLFDE DI RSM+KIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGD
Sbjct: 136 DMLFDESDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGD 195
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSREEDRHLRAAELPQFSPDICIIESTYGVQ HQPR +REKRFT+VIH+T+SQGGRVLIP
Sbjct: 196 YSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTEVIHNTVSQGGRVLIP 255
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
AFALGRAQELLLILDEYWS HPE H IPIYYASPLAK+CMAVYQTYI SMNERIRNQFA
Sbjct: 256 AFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMNERIRNQFAQ 315
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPF FKHI LNSID+F DVGPSVVMASP GLQSGLSRQLFD WC+DK+NACVIPGYVV
Sbjct: 316 SNPFHFKHIESLNSIDNFHDVGPSVVMASPSGLQSGLSRQLFDKWCTDKRNACVIPGYVV 375
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAKTII+EP+EV L NGLTAPL+M VHYISFSAHAD+ QTS FL EL PPNIILVHG
Sbjct: 376 EGTLAKTIINEPREVALANGLTAPLHMSVHYISFSAHADFPQTSNFLDELRPPNIILVHG 435
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
E++EM RLK KL+T+ NTKI++PKNCQSVEMYF EKMAKTIGRLAEK PE GE+
Sbjct: 436 EANEMSRLKQKLITQFDGTNTKIVSPKNCQSVEMYFTCEKMAKTIGRLAEKVPEAGESSG 495
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
G+LVKKGFTYQIMAP+DL +F+QLSTANI QRI
Sbjct: 496 GLLVKKGFTYQIMAPEDLRVFTQLSTANIMQRI 528
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/513 (84%), Positives = 472/513 (92%), Gaps = 2/513 (0%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
+R A REGDQ++ITPLGAG+EVGRSCV+M++KG+T+LFDCGIHPAYSGMAALPYFDEI
Sbjct: 16 KRPASSGREGDQMVITPLGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEI 75
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
DPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY+LLL+DYVKVSKVSVE
Sbjct: 76 DPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKVSKVSVE 135
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DML+DE DI RSM+KIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVR+LYTGD
Sbjct: 136 DMLYDENDIARSMEKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVRILYTGD 195
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSREEDRHLRAAELPQFSPDICIIESTYGVQ HQPR +REKRFT+VIH+T+SQGGRVLIP
Sbjct: 196 YSREEDRHLRAAELPQFSPDICIIESTYGVQQHQPRIVREKRFTEVIHNTVSQGGRVLIP 255
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
AFALGRAQELLLILDEYWS HPE H IPIYYASPLAK+CMAVYQTYI SMNERIRNQFA
Sbjct: 256 AFALGRAQELLLILDEYWSKHPELHKIPIYYASPLAKRCMAVYQTYINSMNERIRNQFAQ 315
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPF FKHI LNSID+F DVGPSVVMASPGGLQSGLSRQLFD WC+DKKNACVIPGYVV
Sbjct: 316 SNPFHFKHIESLNSIDNFHDVGPSVVMASPGGLQSGLSRQLFDKWCTDKKNACVIPGYVV 375
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAKTII+EP+EVTL NGLTAPL+M VHYISFSAHAD+ QTS FL EL PPNIILVHG
Sbjct: 376 EGTLAKTIINEPREVTLANGLTAPLHMSVHYISFSAHADFPQTSNFLDELRPPNIILVHG 435
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
E++EM RLK KL T+ N I++PKNCQSVEMYF EKMAKTIGRLAEK PE GE+
Sbjct: 436 EANEMSRLKQKLKTQFDGTN--IVSPKNCQSVEMYFTCEKMAKTIGRLAEKVPEGGESSG 493
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
G+LVKKGFTYQIMAP+DL +F+QLSTANITQRI
Sbjct: 494 GLLVKKGFTYQIMAPEDLRVFTQLSTANITQRI 526
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/525 (82%), Positives = 459/525 (87%), Gaps = 50/525 (9%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS G P SLKR D+ ++REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPPQSLKRPDSSLTREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+
Sbjct: 61 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 121 DYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 180
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVRVLYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR++REKRFTDVIHS
Sbjct: 181 IAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTYGVQLHQPRHVREKRFTDVIHS 240
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPE HNIPIYYASPLAK+CMAVYQTYI S
Sbjct: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYINS 300
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFANSNPF FKHISPL SI++F+DVGPSVVMASP GLQSGLSRQLFD+WCSDK
Sbjct: 301 MNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPSGLQSGLSRQLFDMWCSDK 360
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
KNACVIPGYVVEGTLAKTII+EPKE
Sbjct: 361 KNACVIPGYVVEGTLAKTIINEPKE----------------------------------- 385
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
MGRLK KL+T+ AD NTKII+PKNCQSVEMYFNSEKMAKTIGRLA
Sbjct: 386 ---------------MGRLKQKLITQFADRNTKIISPKNCQSVEMYFNSEKMAKTIGRLA 430
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
EKTP VGETVSG+LVKKGFTYQIMAPDDLH+FSQLSTAN+TQRIT
Sbjct: 431 EKTPGVGETVSGLLVKKGFTYQIMAPDDLHVFSQLSTANVTQRIT 475
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/515 (77%), Positives = 464/515 (90%), Gaps = 2/515 (0%)
Query: 11 KRRDAP--VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
KR+D VSREGD+L +TPLGAGNEVGRSCVYM+YKGKT++FDCGIHP YSGMAALPYF
Sbjct: 3 KRKDPTTVVSREGDKLEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYF 62
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDP +IDVLL+THFHLDH ASLPYFLEKT FKGRVFMTHATKAIYKLLL+D+VK+SKV
Sbjct: 63 DEIDPISIDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKISKV 122
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SV+DML+DE DI R+M+KIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAG+RVLY
Sbjct: 123 SVDDMLYDEHDIARTMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGMRVLY 182
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYS EEDRHLRAAE+P FSPD+CIIESTYGVQ+HQPR +RE+RFTD + T+SQGG+V
Sbjct: 183 TGDYSCEEDRHLRAAEMPHFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQGGKV 242
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW HPE +IPIYYASPLAKKCMAVYQTYI +MN+RI+ Q
Sbjct: 243 LIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNDRIQKQ 302
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
F SNPF FKHI PL +ID F D+GP+VVMASPGGLQSGLSRQLFDIWC DKKN+C+IPG
Sbjct: 303 FEVSNPFDFKHIQPLKNIDGFDDIGPAVVMASPGGLQSGLSRQLFDIWCQDKKNSCIIPG 362
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
YVVEGTLAK I++EPKEVTL++GL PLNM+VHYISFSAHAD+ QT+ FL EL PPNIIL
Sbjct: 363 YVVEGTLAKAIMNEPKEVTLLSGLVVPLNMRVHYISFSAHADFTQTNAFLHELRPPNIIL 422
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EMGRLK KL+T+ A+ N KI++PKNCQ+VEM+F EK+AK +GRLAEK+ + G+
Sbjct: 423 VHGEANEMGRLKAKLITQFAEQNVKILSPKNCQTVEMFFKGEKIAKAVGRLAEKSAKEGD 482
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
VSG+LV+KGFTYQ+MAPDDLH F+QLST ++ QR
Sbjct: 483 IVSGLLVRKGFTYQLMAPDDLHSFTQLSTGSVMQR 517
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 883 bits (2282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/515 (77%), Positives = 463/515 (89%), Gaps = 2/515 (0%)
Query: 11 KRRDAP--VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
KR+D ++REGD+L +TPLGAGNEVGRSCVYM+YKGKT++FDCGIHP YSGMAALPYF
Sbjct: 3 KRKDTATVITREGDKLEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYF 62
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDP +IDVLL+THFHLDH ASLPYFLEKT FKGRVFMTHATKAIYKLLL+D+VK+SKV
Sbjct: 63 DEIDPISIDVLLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKISKV 122
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SV+DML+DE DI R+M+KIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAG+RVLY
Sbjct: 123 SVDDMLYDEHDIARTMEKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGMRVLY 182
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYS EEDRHLRAAE+P+FSPD+CIIESTYGVQ+HQPR +RE+RFTD + T+SQGG+V
Sbjct: 183 TGDYSCEEDRHLRAAEMPRFSPDVCIIESTYGVQIHQPRIMRERRFTDTVAQTVSQGGKV 242
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW HPE +IPIYYASPLAKKCMAVYQTYI +MNERI+ Q
Sbjct: 243 LIPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINAMNERIQKQ 302
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
F SNPF FKHI PL +ID+F D+GP+VVMASPGGLQSGLSRQLFDIWC DKKN+CVIPG
Sbjct: 303 FEVSNPFDFKHIQPLKNIDEFDDIGPAVVMASPGGLQSGLSRQLFDIWCQDKKNSCVIPG 362
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
YVVEGT AK I++EPKEVTL++GL PLNM+VHYISFSAHAD+ QTS FL EL PPNIIL
Sbjct: 363 YVVEGTPAKAIMNEPKEVTLLSGLVVPLNMRVHYISFSAHADFTQTSAFLHELRPPNIIL 422
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EMGRLK KL T+ A+ N KI++PKNCQ+VEM+F EK+AK +GRLAEK + G+
Sbjct: 423 VHGEANEMGRLKAKLTTQFAEQNVKILSPKNCQTVEMFFKGEKIAKAVGRLAEKPAKEGD 482
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
VSG+LV+KGFTYQ+MAPDDLH F+QLST ++ QR
Sbjct: 483 IVSGLLVRKGFTYQLMAPDDLHSFTQLSTGSVMQR 517
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/516 (77%), Positives = 461/516 (89%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR+D+ EG+++ I PLGAG+EVGRSC +M+YKGKTILFDCGIHP Y+GMAALPYFD
Sbjct: 2 LKRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFD 61
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
EIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK+SK S
Sbjct: 62 EIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKISKGS 121
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
VEDML+DEQD+ ++MDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAG+RVLYT
Sbjct: 122 VEDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGIRVLYT 181
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYSREEDRHL+AAE+P+FSPD+CIIESTYGVQ+HQPR++REKRFT+ I T+S GGRVL
Sbjct: 182 GDYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVSHGGRVL 241
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IPAFALGRAQELLLILDEYW HPE +IPIYYASPLAKKCMAVYQTYI SMN++I++Q+
Sbjct: 242 IPAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMNDKIKSQY 301
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
NSNPF FKHISPL SI+ F DVGPS+VMASP GLQSGLSRQLFD WC D+KNACVIPGY
Sbjct: 302 ENSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWCQDRKNACVIPGY 361
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VVEGTLAKTI++EPKEV L++GL PLNM+V YISFSAHAD+AQTS FL EL PP+I+LV
Sbjct: 362 VVEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAFLGELRPPHIVLV 421
Query: 430 HGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
HGE +EMGRLK KL + A+ N KI +PKNCQ VE +F EK+AK +GRLAEKTP+ G
Sbjct: 422 HGEQNEMGRLKVKLQAQFAEQNVKINSPKNCQPVEFFFKGEKVAKAVGRLAEKTPDEGGA 481
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
VSG+L+KK FTYQ+MAPDDLH+++QLS +I QR++
Sbjct: 482 VSGLLIKKSFTYQLMAPDDLHVYTQLSRGSIQQRLS 517
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/515 (77%), Positives = 460/515 (89%)
Query: 11 KRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 70
+R+D+ EG+++ I PLGAG+EVGRSC +M+YKGKTILFDCGIHP Y+GMAALPYFDE
Sbjct: 10 QRKDSMARNEGEKMEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDE 69
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
IDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK+SK SV
Sbjct: 70 IDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKISKGSV 129
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
EDML+DEQD+ ++MDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAG+RVLYTG
Sbjct: 130 EDMLYDEQDVLKTMDKIEVIDFHQTMEVNGIRFWCYTAGHVLGAAMFMVDIAGIRVLYTG 189
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSREEDRHL+AAE+P+FSPD+CIIESTYGVQ+HQPR++REKRFT+ I T+S GGRVLI
Sbjct: 190 DYSREEDRHLKAAEMPEFSPDVCIIESTYGVQIHQPRHVREKRFTETIAQTVSHGGRVLI 249
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PAFALGRAQELLLILDEYW HPE +IPIYYASPLAKKCMAVYQTYI SMN++I++Q+
Sbjct: 250 PAFALGRAQELLLILDEYWEAHPELQHIPIYYASPLAKKCMAVYQTYINSMNDKIKSQYE 309
Query: 311 NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
NSNPF FKHISPL SI+ F DVGPS+VMASP GLQSGLSRQLFD WC D+KNACVIPGYV
Sbjct: 310 NSNPFNFKHISPLKSIEQFEDVGPSIVMASPSGLQSGLSRQLFDRWCQDRKNACVIPGYV 369
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
VEGTLAKTI++EPKEV L++GL PLNM+V YISFSAHAD+AQTS FL EL PP+I+LVH
Sbjct: 370 VEGTLAKTILNEPKEVALVSGLVVPLNMRVVYISFSAHADFAQTSAFLGELRPPHIVLVH 429
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETV 490
GE +EMGRLK KL + A+ N KI +PKNCQ VE +F EK+AK +GRLAEKTP+ G V
Sbjct: 430 GEQNEMGRLKVKLQAQFAEQNVKINSPKNCQPVEFFFKGEKVAKAVGRLAEKTPDEGGAV 489
Query: 491 SGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
SG+L+KK FTYQ+MAPDDLH+++QLS +I QR++
Sbjct: 490 SGLLIKKSFTYQLMAPDDLHVYTQLSRGSIQQRLS 524
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/385 (90%), Positives = 370/385 (96%), Gaps = 1/385 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS G SLKR D+ ++R GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 59
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLL+
Sbjct: 60 GMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLS 119
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 120 DYVKVSKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVD 179
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVRVLYTGDYSREEDRHLRAAE+PQF PDICIIESTYGVQLHQPR++REKRFTDVIHS
Sbjct: 180 IAGVRVLYTGDYSREEDRHLRAAEIPQFCPDICIIESTYGVQLHQPRHVREKRFTDVIHS 239
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TISQGGRVLIPA+ALGRAQELLLILDEYWSNHPE HN+PIYYASPLAK+CMAVYQTYI S
Sbjct: 240 TISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKRCMAVYQTYINS 299
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
MNERIRNQFANSNPF FKHISPL SI++F+DVGPSVVMASPGGLQSGLSRQLFD+WCSDK
Sbjct: 300 MNERIRNQFANSNPFDFKHISPLKSIENFNDVGPSVVMASPGGLQSGLSRQLFDMWCSDK 359
Query: 361 KNACVIPGYVVEGTLAKTIISEPKE 385
KNACVIPGYVV GTLAKTII+EPKE
Sbjct: 360 KNACVIPGYVVGGTLAKTIINEPKE 384
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/75 (89%), Positives = 70/75 (93%), Gaps = 1/75 (1%)
Query: 452 TKIITPK-NCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLH 510
T I PK NCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG+LVKKGFTYQIMAPDDLH
Sbjct: 377 TIINEPKENCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGLLVKKGFTYQIMAPDDLH 436
Query: 511 IFSQLSTANITQRIT 525
+F QLSTAN+TQRIT
Sbjct: 437 VFWQLSTANVTQRIT 451
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/516 (62%), Positives = 405/516 (78%), Gaps = 3/516 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D+ V + E D+LII PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPYFD
Sbjct: 5 RKVDSQVPAEESDRLIIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYFD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+P ID+LLI+HFHLDH +LP+FL+KT F+GRVFMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIEPDEIDLLLISHFHLDHCGALPWFLQKTNFQGRVFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ + D+ SMD+IE +DFH EV G+KFWCY AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 TEQMLYTDNDLENSMDRIETIDFHVETEVLGVKFWCYNAGHVLGAAMFMIEIAGVKLLYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAELP PD+ IIESTYG +H+ R RE RFT +H +++GGR L
Sbjct: 185 GDFSRQEDRHLMAAELPSVRPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYW+NHPE H+IPIYYAS LAKKCM+VYQTYI +MN++I+ Q
Sbjct: 245 IPVFALGRAQELLLILDEYWANHPELHDIPIYYASSLAKKCMSVYQTYINAMNDKIKRQI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
SNPF FKHIS L +D F D+GPSVVMASPG +QSGLSR+LF+ WC+D++N +I GY
Sbjct: 305 TISNPFVFKHISNLRGMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRRNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK I+S+P+EVT M+G PL M V YISFSAHADY Q S F+++L+PP++ILV
Sbjct: 365 CVEGTLAKHILSQPEEVTTMSGQKLPLKMSVDYISFSAHADYQQISDFIRKLIPPHVILV 424
Query: 430 HGESHEMGRLKTKLMT--ELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVG 487
HGE +EMGRLK ++ E +D + ++ PKN Q+VE+YF EKMAK +G LA K PE G
Sbjct: 425 HGEQNEMGRLKAAVVRDYEDSDIDLQVHNPKNTQAVELYFRGEKMAKVMGSLASKKPEHG 484
Query: 488 ETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
VSGILVK+ F Y I+AP DL ++ L+ + +TQR
Sbjct: 485 HKVSGILVKRNFNYHIIAPSDLGSYTDLAVSTVTQR 520
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/517 (62%), Positives = 403/517 (77%), Gaps = 4/517 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
+R DA V + E D L I PLGAG EVGRSC + +KGK I+ D GIHP +G+ ALP+ D
Sbjct: 5 RRMDAQVPAEESDLLSIRPLGAGQEVGRSCHMLEFKGKKIMLDTGIHPGLNGLNALPFLD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP ID+LLI+HFHLDH LPYFL KT+F+GRVFMTHATKAIYK LL+DY+KVS +S
Sbjct: 65 LIDPEEIDLLLISHFHLDHCGGLPYFLTKTSFRGRVFMTHATKAIYKWLLSDYIKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
EDML+ E D++ SMDKIE ++FHQ +VNGIKFWCY AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 SEDMLYTENDLSASMDKIETVNFHQETDVNGIKFWCYNAGHVLGAAMFMIEIAGVKILYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ IIE+TYG +H+ R RE RFT +H +++GGR L
Sbjct: 185 GDFSRQEDRHLMAAEVPAIHPDVLIIEATYGTHIHEKREEREARFTSTVHDIVNRGGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWSNHPE H+IPIYYAS LAKKCMAVYQTYI +MNE+IR Q
Sbjct: 245 IPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYINAMNEKIRKQI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+ SNPF FKHIS L +D F D+GPSVVMASPG +QSGLSR+LF+ WC+D++N C+I GY
Sbjct: 305 SVSNPFVFKHISNLKGMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRRNGCIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK I+SEP+E+T M+G PL V YISFSAH DY QTS F+++L PP+++LV
Sbjct: 365 CVEGTLAKHIMSEPEEITTMSGQKIPLKCSVDYISFSAHTDYQQTSDFIRQLKPPHVVLV 424
Query: 430 HGESHEMGRLKTKLMTELA---DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE++EM RLK ++ E D N ++ PKN Q+VE+YF EKMAK +G LA K PE
Sbjct: 425 HGEANEMSRLKAAVIREYEDDPDVNIEVHNPKNTQAVELYFRGEKMAKVMGSLASKKPEQ 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ +SGILVK+ F Y ++AP D+ ++ L+T+ +TQR
Sbjct: 485 SDRLSGILVKRNFNYHLVAPSDISNYTDLATSTVTQR 521
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/520 (61%), Positives = 405/520 (77%), Gaps = 5/520 (0%)
Query: 9 SLKRRDAPV--SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ V E D L ITPLG+G EVGRSC + +KGK ++ DCGIHP +G+ +LP
Sbjct: 4 SVKRKADSVIPPEESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLP 63
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
+ DEID + ID+LL++HFHLDH SLP+ LEKTTFKGRVFMTHATKAIY+ LL+DYVKVS
Sbjct: 64 FLDEIDTAEIDLLLVSHFHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRWLLSDYVKVS 123
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ EDMLF E D+ +SMDKIE L FHQ EV GIKFWCY AGHVLGA MFM++IAGV++
Sbjct: 124 NIAAEDMLFTESDLEKSMDKIETLHFHQEKEVGGIKFWCYHAGHVLGACMFMLEIAGVKI 183
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P SPD+ IIESTYG +H+ R RE RFT +H +++GG
Sbjct: 184 LYTGDFSRQEDRHLMAAEIPSISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGG 243
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCM+V+QTY+ +MN++I+
Sbjct: 244 RCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMNDKIK 303
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q A SNPF FKHIS L SID F D+GPSVVMASPG +QSGLSR+LF+ WC+D++N +I
Sbjct: 304 KQIAISNPFVFKHISNLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNGVII 363
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAK ++SEP+EV M+G P V YISFSAH D+ QTS F++ L PP+I
Sbjct: 364 AGYCVEGTLAKNLMSEPEEVQTMSGQKIPRKCSVDYISFSAHTDFEQTSEFIRILKPPHI 423
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
+LVHGE +EMGRLK L+ E D + + P NCQSVE+YF EKMAK +G++A +
Sbjct: 424 VLVHGEQNEMGRLKAALIREYEDKSEVSLVVHNPPNCQSVELYFRGEKMAKVMGQMAREK 483
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
PE G+ +SGIL+K+GF Y ++APDDL +++L+T+ +TQ+
Sbjct: 484 PEHGKPLSGILIKRGFNYHLIAPDDLQNYTELATSVLTQK 523
>gi|255542245|ref|XP_002512186.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
gi|223548730|gb|EEF50220.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
Length = 361
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/350 (94%), Positives = 340/350 (97%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
M S Q PSLKRRDAPV+REGD L +TPLGAGNEVGRSCVYMSYKGK +LFDCGIHPAYS
Sbjct: 1 MGSTAQSPSLKRRDAPVTREGDVLTVTPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT
Sbjct: 61 GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVSKVS+EDMLFDEQDINRSMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
Sbjct: 121 DYVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVR+LYTGDYSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR+IREKRFTDVIHS
Sbjct: 181 IAGVRLLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHS 240
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPE HN+PIYYASPLAKKCM VYQTYILS
Sbjct: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNVPIYYASPLAKKCMTVYQTYILS 300
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MNERIRNQFANSNPFKFKHISPLNSI+DF+DVGPSVVMASPGGLQSGLSR
Sbjct: 301 MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSR 350
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/520 (61%), Positives = 400/520 (76%), Gaps = 5/520 (0%)
Query: 9 SLKRR--DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ A + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALP
Sbjct: 2 SVKRKAESAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALP 61
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
Y D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS
Sbjct: 62 YIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 121
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
+S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++
Sbjct: 122 NISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKL 181
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GG
Sbjct: 182 LYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGG 241
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 242 RALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIR 301
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I
Sbjct: 302 KQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 361
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAK I+SEP+E+ M+G PL M V YISFSAH DY QTS F++ L PP++
Sbjct: 362 AGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHV 421
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
ILVHGE +EM RLK L+ E D ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 422 ILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKK 481
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
PE G+ +SGILVK+ F Y I+ P DL ++ L+ + +TQ+
Sbjct: 482 PEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQK 521
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/520 (61%), Positives = 400/520 (76%), Gaps = 5/520 (0%)
Query: 9 SLKRR--DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ A + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALP
Sbjct: 2 SVKRKAESAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALP 61
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
Y D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS
Sbjct: 62 YIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 121
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
+S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++
Sbjct: 122 NISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKL 181
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GG
Sbjct: 182 LYTGDFSRQEDRHLMAAEIPNVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGG 241
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 242 RALIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIR 301
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I
Sbjct: 302 KQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 361
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAK I+SEP+E+ M+G PL M V YISFSAH DY QTS F++ L PP++
Sbjct: 362 AGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHV 421
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
ILVHGE +EM RLK L+ E D ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 422 ILVHGEQNEMARLKAALIREYEDNDEVEIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKK 481
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
PE G+ +SGILVK+ F Y I+ P DL ++ L+ + +TQ+
Sbjct: 482 PEQGQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQK 521
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/509 (62%), Positives = 393/509 (77%), Gaps = 3/509 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L+I PLG+G EVGRSC + +KGK I+ DCGIHP +G A+LP+ D ++ +D+L
Sbjct: 13 ESDNLLIRPLGSGQEVGRSCHLLEFKGKKIMLDCGIHPGLNGFASLPFLDLVEVEEVDLL 72
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
LI+HFHLDH +LPYFLEKT FKGR FMTHA+KAIY+ LL+DYVKVS ++ EDML+ E D
Sbjct: 73 LISHFHLDHCGALPYFLEKTQFKGRCFMTHASKAIYRWLLSDYVKVSNIATEDMLYTESD 132
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
I SMDKIE ++FHQ VEVNGIKFWCYTAGHVLGAAMFM++IAGVRVLYTGD+SR+EDRH
Sbjct: 133 IENSMDKIETINFHQEVEVNGIKFWCYTAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRH 192
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P+ PD+ IIESTYG +H+ R RE RFT ++H +S+GGR LIP FALGRAQ
Sbjct: 193 LMAAEIPRIHPDVVIIESTYGTHIHEKREDREARFTGLVHDIVSRGGRCLIPVFALGRAQ 252
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDEYWSNHPE H+IPIYYAS LAKKCM+VYQTYI +MNE+IR Q SNPF FKH
Sbjct: 253 ELLLILDEYWSNHPELHDIPIYYASSLAKKCMSVYQTYINAMNEKIRRQINISNPFVFKH 312
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L S++ F D+GPSVV+ASPG +QSGLSR+LF+ WC+DK+N C+I GY VEGTLAK I
Sbjct: 313 ISNLKSMEHFEDIGPSVVLASPGMMQSGLSRELFESWCTDKRNGCIIAGYCVEGTLAKHI 372
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP E+ M G PL V YISFSAH DY QTS FL+ L P +++LVHGE +EM RL
Sbjct: 373 LSEPDEIMTMTGQKLPLKCSVDYISFSAHTDYKQTSEFLRALKPAHVVLVHGEQNEMSRL 432
Query: 440 KTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L+ E D + PKN +VE++F EKMAK +G LA + P+ + +SGILVK
Sbjct: 433 KAALIREYEDDTEYQMNVHNPKNTVAVELHFRGEKMAKVVGSLAAEKPKQDQRISGILVK 492
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ F Y I+AP DL ++ L+ + +TQR++
Sbjct: 493 RNFNYHIVAPADLSNYTDLAMSTVTQRLS 521
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/509 (62%), Positives = 394/509 (77%), Gaps = 3/509 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S E D L ITPLGAG EVGRSC+++ +KGK +L D GIHP Y+G+ +LP+ DEIDP +D
Sbjct: 4 SEESDLLRITPLGAGQEVGRSCIFIEFKGKKLLLDLGIHPGYNGLDSLPFIDEIDPGEVD 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH LP+FLEKT FKGRVFMTH TKAIY+ LL DY+KVS +S + ML+ E
Sbjct: 64 LLLISHFHLDHCGGLPWFLEKTHFKGRVFMTHPTKAIYRWLLADYIKVSNISADQMLYTE 123
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+D+ +SMDKIE + FHQ EV+GIKFW Y AGHVLGAAMFM++IAGV +LYTGD+SR+ED
Sbjct: 124 KDLEKSMDKIETMHFHQEKEVSGIKFWAYNAGHVLGAAMFMIEIAGVNILYTGDFSRQED 183
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL +AE+P SPD+ I+ESTYG +H+ R REKRFT IH+ IS+GGR LIP FALGR
Sbjct: 184 RHLMSAEIPNISPDVLIMESTYGTHVHEKREQREKRFTSTIHNIISRGGRCLIPVFALGR 243
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW+ HPE ++P+YYAS LAKKCMAVYQTYI +MNE+IR Q + SNPF F
Sbjct: 244 AQELLLILDEYWNQHPELQDVPVYYASSLAKKCMAVYQTYISAMNEKIRRQISISNPFVF 303
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L ID F D+GPSVV+ASPG +QSGLSR+LF+ WC+D +N +I GY VEGTLAK
Sbjct: 304 KHISNLKGIDSFDDIGPSVVLASPGMMQSGLSRELFETWCTDPRNGVIIAGYCVEGTLAK 363
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
++SEP+EVT MNG N+ + YISFSAHAD+ Q S F+ L PP+I+L HGE +EM
Sbjct: 364 ELMSEPEEVTAMNGQRMKRNISIDYISFSAHADFEQISEFVDILRPPHIVLNHGEQNEMS 423
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK ++ + D N ++ PKNCQSVE++F EKMAK IG LA E G+ +SGIL
Sbjct: 424 RLKAAIIRDFEDRGISNIQVYNPKNCQSVELHFRGEKMAKVIGSLASGKAEHGKPISGIL 483
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+K+GF Y +MAP DL ++ LST+ ITQR
Sbjct: 484 LKRGFNYHVMAPSDLSSYTDLSTSTITQR 512
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/520 (60%), Positives = 400/520 (76%), Gaps = 5/520 (0%)
Query: 9 SLKRR--DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ A + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALP
Sbjct: 2 SVKRKAESAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALP 61
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
Y D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS
Sbjct: 62 YIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 121
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
+S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++
Sbjct: 122 NISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKL 181
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GG
Sbjct: 182 LYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGG 241
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 242 RSLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIR 301
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I
Sbjct: 302 KQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 361
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAK I+SEP+E+ M+G PL M V YISFSAH DY QTS F++ L PP++
Sbjct: 362 AGYCVEGTLAKHIMSEPEEIVTMSGQKLPLKMSVDYISFSAHTDYQQTSEFVRALKPPHV 421
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
ILVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 422 ILVHGEQNEMARLKAALIREYEDNEEVDIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKK 481
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
PE + +SGILVK+ F Y I+ P DL ++ L+ + +TQ+
Sbjct: 482 PEQAQRISGILVKRNFNYHILCPSDLSSYTDLAMSTVTQK 521
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/528 (60%), Positives = 405/528 (76%), Gaps = 8/528 (1%)
Query: 2 ASVGQPPSLKRRDAPVS----REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP 57
A+ PP L+R+ + +S E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP
Sbjct: 20 AACSSPP-LRRQISEMSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHP 78
Query: 58 AYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL 117
GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+
Sbjct: 79 GLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRW 138
Query: 118 LLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177
LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMF
Sbjct: 139 LLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMF 198
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
M++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF +
Sbjct: 199 MIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNT 258
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY
Sbjct: 259 VHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTY 318
Query: 298 ILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC
Sbjct: 319 VNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWC 378
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 417
+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F
Sbjct: 379 TDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEF 438
Query: 418 LKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAK 474
++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK
Sbjct: 439 IRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAK 498
Query: 475 TIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
+G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 499 VMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 546
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 396/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 43 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 102
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 103 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 162
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 163 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 222
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 223 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 282
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 283 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 342
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 343 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 402
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 403 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 462
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ +SGIL
Sbjct: 463 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGIL 522
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + +TQ
Sbjct: 523 VKRNFNYHILSPCDLSSYTDLAMSTVTQ 550
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/522 (60%), Positives = 399/522 (76%), Gaps = 3/522 (0%)
Query: 4 VGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
V P R A + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM
Sbjct: 9 VHAAPETARMSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMD 68
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYV
Sbjct: 69 ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV 128
Query: 124 KVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 183
KVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAG
Sbjct: 129 KVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAG 188
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
V++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H ++
Sbjct: 189 VKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVN 248
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN+
Sbjct: 249 RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMND 308
Query: 304 RIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N
Sbjct: 309 KIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNG 368
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
+I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L P
Sbjct: 369 VIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKP 428
Query: 424 PNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
P++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA
Sbjct: 429 PHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLA 488
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 489 DKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 530
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 396/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 68 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 127
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 128 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 187
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 188 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 247
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 248 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 307
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 308 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 367
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 368 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 427
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 428 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 487
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ +SGIL
Sbjct: 488 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGIL 547
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + +TQ
Sbjct: 548 VKRNFNYHILSPCDLSNYTDLAMSTVTQ 575
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 36 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 95
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 96 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 155
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 156 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 215
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 216 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 275
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 276 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 335
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 336 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 395
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 396 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 455
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 456 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGLLADKKPEQGQRVSGIL 515
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 516 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 543
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+ M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEKNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHGVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RL+ L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLRAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVHAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+ M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/524 (60%), Positives = 395/524 (75%), Gaps = 3/524 (0%)
Query: 5 GQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA 64
G P K + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SG+ A
Sbjct: 6 GDSPKRKADTQVPAEESDLLLIRPLGAGQEVGRSCIILEFKGKRIMLDCGIHPGMSGLDA 65
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LPY D I+ ID+LL++HFHLDH +LP+FL+KTTFKGR FMTHATKAIY+ LL DY+K
Sbjct: 66 LPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADYIK 125
Query: 125 VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
VS + E ML+ E D+ SM+KIE ++FH+ EVNGI+FWCY AGHVLGAAMFM++IAGV
Sbjct: 126 VSNIGTEQMLYSETDLEASMEKIETINFHEEKEVNGIRFWCYNAGHVLGAAMFMIEIAGV 185
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
+VLYTGD+SR+EDRHL AAE+P PD+ IIESTYG +H+ R RE RFT ++H +++
Sbjct: 186 KVLYTGDFSRQEDRHLMAAEIPNIHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNR 245
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GGR LIP FALGRAQELLLILDEYWSNHPE H+IPIYYAS LAKKCMAVYQTY+ +MNER
Sbjct: 246 GGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNER 305
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
IR Q +NPF FKHIS L SI+ F DVGP VVMASPG +QSGLSR+LF+ WC+D KN
Sbjct: 306 IRRQITINNPFVFKHISNLKSIEHFEDVGPCVVMASPGMMQSGLSRELFESWCTDPKNGV 365
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
+I GY VEGTLAKTI+SEP+E++ M G PL M V YISFSAH DY QTS F++ L PP
Sbjct: 366 IIAGYCVEGTLAKTILSEPEEISTMVGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPP 425
Query: 425 NIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
+I+LVHGE +EMGRLK ++ E D ++ P+N Q+VE+YF EK AK +G LA
Sbjct: 426 HIVLVHGEQNEMGRLKAAIVREYEDDVETRIEVHNPRNTQAVELYFRGEKTAKVMGSLAV 485
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ PE G +SG+LVK+ F+Y ++ P DL ++ + + + QR++
Sbjct: 486 QAPEPGRQLSGVLVKRNFSYHLLLPADLAKYTDMVMSTVGQRMS 529
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/504 (64%), Positives = 390/504 (77%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
+ D L I PLGAG EVGRSC+ + +K K I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 59 DSDLLTIRPLGAGQEVGRSCIMLEFKNKKIMLDCGIHPGLSGMDALPYTDMIESDEIDLL 118
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
LITHFHLDH +LP+FLEKTTFKGRVFMT ATKAIY+ LL+DY+KVS +S + ML+ E+D
Sbjct: 119 LITHFHLDHCGALPWFLEKTTFKGRVFMTPATKAIYRWLLSDYIKVSNISSDHMLYTEKD 178
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ +SMDKIE+++FHQ V+V+GIKF Y AGHVLGAAMFM++IAGV+VLYTGD+SR EDRH
Sbjct: 179 LEKSMDKIEIINFHQEVDVSGIKFTAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRVEDRH 238
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P SPDI I ESTYG +H+ R RE RFT IH +++GG LIP FALGRAQ
Sbjct: 239 LMAAEVPNSSPDILISESTYGTHIHEKREQREARFTTKIHDIVTRGGHCLIPVFALGRAQ 298
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDEYWS HPE H+IPIYYAS LAKKCMAVYQTYI +MNERIR Q SNPF FKH
Sbjct: 299 ELLLILDEYWSCHPELHDIPIYYASSLAKKCMAVYQTYIGAMNERIRRQIGISNPFVFKH 358
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L +ID+F D+GP V++ASPG +QSGLSRQLF+ WC+DK+N V+ GY VEGTLAK I
Sbjct: 359 ISSLKNIDNFDDIGPCVILASPGMMQSGLSRQLFESWCTDKRNGVVVAGYCVEGTLAKHI 418
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP EV MNG PL M V YISFSAH DY QTS F++ L PP+I+LVHGE +EM RL
Sbjct: 419 LSEPSEVVTMNGQKLPLRMSVDYISFSAHTDYEQTSEFIRILNPPHIVLVHGEQNEMMRL 478
Query: 440 KTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGF 499
K L+ E D I TP+N Q+VE+YF EKMAK +G LA K G+ +SGILVK+GF
Sbjct: 479 KQGLLREFEDFQGSIYTPRNTQAVELYFRGEKMAKVMGSLASKQCTDGQQLSGILVKRGF 538
Query: 500 TYQIMAPDDLHIFSQLSTANITQR 523
Y ++ P DL+ ++ LST+++ QR
Sbjct: 539 NYHLVEPADLNNYTDLSTSSVVQR 562
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAG+++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/508 (61%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM AL Y D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALAYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA++ PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADRKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TVLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/508 (61%), Positives = 394/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTY +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYRTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/530 (59%), Positives = 400/530 (75%), Gaps = 6/530 (1%)
Query: 2 ASVGQPPSLKRRDAPV---SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA 58
AS+ P +R A + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP
Sbjct: 43 ASMDTPVDSPKRKADSQIPAEESDLLLIRPLGAGQEVGRSCIMLEFKGKRIMLDCGIHPG 102
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL 118
SG+ ALPY D I+ ID+LL++HFHLDH +LP+FL+KTTFKGR FMTHATKAIY+ L
Sbjct: 103 MSGLDALPYVDLIEADEIDLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWL 162
Query: 119 LTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
L DY+KVS + E ML+ E D+ SM+KIE ++FH+ +VNGI+FWCY AGHVLGAAMFM
Sbjct: 163 LADYIKVSNIGTEQMLYSEADLESSMEKIETINFHEEKDVNGIRFWCYNAGHVLGAAMFM 222
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
++IAGV+VLYTGD+SR+EDRHL AAE+P PD+ IIESTYG +H+ R RE RFT ++
Sbjct: 223 IEIAGVKVLYTGDFSRQEDRHLMAAEIPNIHPDVLIIESTYGTHIHEKREEREARFTGLV 282
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
H +++GGR LIP FALGRAQELLLILDEYWSNHPE H+IPIYYAS LAKKCMAVYQTY+
Sbjct: 283 HDIVNRGGRCLIPVFALGRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYV 342
Query: 299 LSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCS 358
+MNERIR Q +NPF FKHIS L SI+ F D+GP VVMASPG +QSGLSR+LF+ WC+
Sbjct: 343 NAMNERIRRQITINNPFVFKHISNLKSIEHFEDIGPCVVMASPGMMQSGLSRELFESWCT 402
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFL 418
D KN +I GY VEGTLAKTI+SEP+E++ M G PL M V YISFSAH DY QTS F+
Sbjct: 403 DPKNGVIIAGYCVEGTLAKTILSEPEEISTMVGQKLPLKMSVDYISFSAHTDYQQTSEFI 462
Query: 419 KELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKT 475
+ L PP+I+LVHGE +EMGRLK ++ E D ++ P+N Q+VE++F EK AK
Sbjct: 463 RTLKPPHIVLVHGEQNEMGRLKAAIVREYEDDLETRIEVHNPRNTQAVELHFRGEKTAKV 522
Query: 476 IGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+G LA + PE G +SG+LVK+ F+Y ++AP DL ++ + + + QR++
Sbjct: 523 MGSLAVQPPEPGRQLSGVLVKRNFSYHLLAPTDLGKYTDMVMSTVGQRMS 572
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/510 (61%), Positives = 394/510 (77%), Gaps = 5/510 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGR--LAEKTPEVGETVSG 492
RLK L+ E D + ++ P+N ++V + F EK+AK G LA+K PE G+ VSG
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVKGHGLLADKKPEQGQRVSG 485
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
ILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 515
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/516 (60%), Positives = 396/516 (76%), Gaps = 4/516 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D PV + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
+DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 ADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PDI I ESTYG +H+ R RE RF + +H +++ GR L
Sbjct: 185 GDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 245 IPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY
Sbjct: 305 NINNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILV
Sbjct: 365 CVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILV 424
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 425 HGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCSQ 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
G+ VSGILVKK F+Y I++P DL ++ L+ + + Q
Sbjct: 485 GQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQ 520
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/518 (61%), Positives = 395/518 (76%), Gaps = 6/518 (1%)
Query: 12 RRDAPVS---REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+R A VS + D L I PLGAG EVGRSC + YK KTI+ DCGIHP G+ ALPY
Sbjct: 8 KRSADVSVIGEDSDLLSIKPLGAGQEVGRSCHIIQYKNKTIMLDCGIHPGRHGVEALPYT 67
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID+LLI+HFHLDH +LP+FLE+T+FKGRVFMTHATKAIY+ LL DYVKVS +
Sbjct: 68 DIIAEDQIDLLLISHFHLDHCGALPWFLERTSFKGRVFMTHATKAIYRWLLADYVKVSNI 127
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
S + ML+ E+D+ +SM KIE + FHQ EVNGIKFWCY AGHVLGAAMFM++IAGV++LY
Sbjct: 128 STDQMLYTEKDLEKSMTKIETIHFHQEKEVNGIKFWCYNAGHVLGAAMFMIEIAGVKILY 187
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGD+SR+EDRHL AAE+P PD+ IIESTYGV +H+ R IREKRFT +H +++GGR
Sbjct: 188 TGDFSRQEDRHLMAAEIPSVKPDVLIIESTYGVHIHEKREIREKRFTSTVHDIVNRGGRC 247
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIP FALGRAQELLLILDEYWSNH E H+IPIYYAS LAKKCMAVYQTY+ +MN++IRNQ
Sbjct: 248 LIPVFALGRAQELLLILDEYWSNHTELHDIPIYYASSLAKKCMAVYQTYVSAMNDKIRNQ 307
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
A SNPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN VI G
Sbjct: 308 IAISNPFIFKHISNLKGIDHFDDIGPCVVMASPGMMQSGLSRELFEKWCTDSKNGVVIAG 367
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y VEGTLAK ++SEP+EV M+G + V YISFSAH DY QTS F++ LMPP+IIL
Sbjct: 368 YCVEGTLAKEVMSEPEEVLSMSGQKLARKLSVDYISFSAHTDYEQTSEFIRMLMPPHIIL 427
Query: 429 VHGESHEMGRLKTKLMTELA---DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
VHGE +EM RLKT L+ E + + + TP+NC+ V++YF EKMAK +G LA + +
Sbjct: 428 VHGEQNEMMRLKTALVREYQENPEISITVHTPRNCEEVQLYFRGEKMAKVMGSLAVEKFQ 487
Query: 486 VGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ +SG+L+K+GF+Y I+ P DL ++ L T+ + QR
Sbjct: 488 DEQQLSGVLIKRGFSYHIVDPSDLSAYTNLKTSTVMQR 525
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/516 (60%), Positives = 396/516 (76%), Gaps = 4/516 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D PV + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D
Sbjct: 5 RKADVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYID 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S
Sbjct: 65 LIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
+DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 ADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PDI I ESTYG +H+ R RE RF + +H +++ GR L
Sbjct: 185 GDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 245 IPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY
Sbjct: 305 NINNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILV
Sbjct: 365 CVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILV 424
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 425 HGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCSQ 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
G+ VSGILVKK F+Y I++P DL ++ L+ + + Q
Sbjct: 485 GQRVSGILVKKNFSYHILSPSDLSNYTDLAMSTVKQ 520
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/513 (62%), Positives = 401/513 (78%), Gaps = 7/513 (1%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID----P 73
+ E D L I P+G+G+EVGRSCV + YKGKTI+FDCG+HPAYSG+++LP+FD I+
Sbjct: 21 AEEDDILQIMPIGSGSEVGRSCVLLKYKGKTIMFDCGVHPAYSGLSSLPFFDSIELYCNI 80
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV-ED 132
ID+LL++HFHLDHAA++PYF++KT FKG+V+MTH TK IYK+LL+DYVKVS +SV ED
Sbjct: 81 DDIDLLLVSHFHLDHAAAVPYFVQKTDFKGKVYMTHPTKKIYKVLLSDYVKVSNISVAED 140
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
M FDEQD+N S+ KIE +++HQ +E NGIKF CY AGHVLGAAMFMV+IAGVR+LYTGD+
Sbjct: 141 MPFDEQDLNASLPKIEHINYHQKIEHNGIKFCCYNAGHVLGAAMFMVEIAGVRILYTGDF 200
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
SR+EDRHL AE P D+ IIESTYGVQ+H+PR RE+RFT IH + +GGR LIP
Sbjct: 201 SRQEDRHLMGAESPPVDVDVLIIESTYGVQVHEPRLERERRFTTSIHEIVRRGGRCLIPV 260
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
FALGRAQELLLILDEYW HPE H IPIYYAS LAKKCM VYQTYI MNERIR QFA S
Sbjct: 261 FALGRAQELLLILDEYWIAHPELHGIPIYYASALAKKCMKVYQTYIQMMNERIRAQFAVS 320
Query: 313 NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
NPF FKHI +N ID+F+D GP V MASPG LQSGLSRQLF+ WCSD++N VIPGY VE
Sbjct: 321 NPFIFKHIKDINGIDNFNDNGPCVFMASPGMLQSGLSRQLFERWCSDRRNGVVIPGYSVE 380
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GTLAK I+SEP E+T ++G+ PLN+ V Y+SFSAH+D+ QTS F++++ PP+I+LVHG+
Sbjct: 381 GTLAKHIMSEPSEITRLDGINVPLNLSVTYVSFSAHSDFLQTSEFIQDIHPPHIVLVHGD 440
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
++EM RLK L+++ N ++TPKN SV M F +K+AK +G +A P G +V G
Sbjct: 441 ANEMSRLKHSLVSKFKTVN--VMTPKNSMSVRMVFKPQKVAKIVGEMANSAPANGTSVQG 498
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+LV K FT+ IMAP DL F+ L T I Q++T
Sbjct: 499 LLVIKDFTHTIMAPGDLQNFTNLKTNIIKQKMT 531
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/508 (61%), Positives = 390/508 (76%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 13 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 132
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 133 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 192
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++ GR LIP FALGR
Sbjct: 193 RHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGR 252
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR +NPF F
Sbjct: 253 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPFVF 312
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 313 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 372
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G L M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 373 HIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 432
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K G+ VSGIL
Sbjct: 433 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCVQGQRVSGIL 492
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VKK F Y I+ P DL +++L+ + + Q
Sbjct: 493 VKKNFNYHILNPSDLSTYTELAMSTVKQ 520
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/517 (60%), Positives = 394/517 (76%), Gaps = 6/517 (1%)
Query: 12 RRDAPVS---REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+R A +S E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY
Sbjct: 4 KRKADLSVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYI 63
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +
Sbjct: 64 DLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNI 123
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LY
Sbjct: 124 SADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKILY 183
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGD+SR+EDRHL AAE+P PDI I ESTYG +H+ R RE RF + IH +++ GR
Sbjct: 184 TGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTIHDIVNREGRC 243
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 244 LIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKA 303
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I G
Sbjct: 304 INVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAG 363
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y VEGTLAK I+SEP+E+T M+G L M V YISFSAH DY QTS F++ L PP++IL
Sbjct: 364 YSVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVIL 423
Query: 429 VHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
VHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K +
Sbjct: 424 VHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCQ 483
Query: 486 VGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
G+ VSGILVK+ F+Y I+ P DL ++ L+ + + Q
Sbjct: 484 QGQRVSGILVKRNFSYHILTPSDLSNYTDLAMSTVKQ 520
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/509 (60%), Positives = 390/509 (76%), Gaps = 3/509 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D ++ ID
Sbjct: 13 AEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEADEID 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DY+KVS ++ E ML+ E
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIATEQMLYTE 132
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ +V GIKFW Y AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 133 SDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQED 192
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GGR LIP FALGR
Sbjct: 193 RHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCLIPVFALGR 252
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYWS HPE H IPIYYAS LAKKCMAVYQTY+ +MN++IR Q A +NPF F
Sbjct: 253 AQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFVF 312
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAK
Sbjct: 313 KHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGYCVEGTLAK 372
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
TI+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP+++LVHGE +EMG
Sbjct: 373 TILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRSLKPPHVVLVHGEQNEMG 432
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L E D +I P+N +VE+YF EK AK +G LA +TP+ G+T+SG+L
Sbjct: 433 RLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPKPGQTLSGVL 492
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
VK+ F Y ++AP DL ++ +S + + QR
Sbjct: 493 VKRNFNYHMLAPCDLSKYTDMSMSQVIQR 521
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/520 (60%), Positives = 397/520 (76%), Gaps = 5/520 (0%)
Query: 9 SLKRR-DAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S KR+ DA V + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP
Sbjct: 2 STKRKPDAQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALP 61
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
+ D ++ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DY+KVS
Sbjct: 62 FVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVS 121
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ E ML+ E D+ SMDKIE ++FH+ +V GIKFW Y AGHVLGAAMFM++IAGV++
Sbjct: 122 NIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKI 181
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GG
Sbjct: 182 LYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGG 241
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYWS HPE H IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 242 RCLIPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIR 301
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q A +NPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I
Sbjct: 302 RQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVII 361
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAKTI+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++
Sbjct: 362 AGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHV 421
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
+LVHGE +EMGRLK L E D +I P+N +VE+YF EK AK +G LA +T
Sbjct: 422 VLVHGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMET 481
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ G+T+SG+LVK+ F Y ++AP DL ++ +S + + QR
Sbjct: 482 PKPGQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQR 521
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/502 (61%), Positives = 390/502 (77%), Gaps = 3/502 (0%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
+T GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFH
Sbjct: 1 MTLKGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD
Sbjct: 61 LDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMD 120
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
KIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+
Sbjct: 121 KIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEI 180
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLIL
Sbjct: 181 PNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLIL 240
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS 325
DEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S
Sbjct: 241 DEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKS 300
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E
Sbjct: 301 MDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEE 360
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RLK L+
Sbjct: 361 ITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIR 420
Query: 446 ELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQ 502
E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ +SGILVK+ F Y
Sbjct: 421 EYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRNFNYH 480
Query: 503 IMAPDDLHIFSQLSTANITQRI 524
I++P DL ++ L+ + +TQ +
Sbjct: 481 ILSPCDLSNYTDLAMSTVTQTL 502
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/519 (60%), Positives = 395/519 (76%), Gaps = 5/519 (0%)
Query: 9 SLKRR-DAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S KR+ D V + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALP
Sbjct: 2 STKRKIDVNVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALP 61
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
Y D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS
Sbjct: 62 YIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS 121
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
+S ++ML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++
Sbjct: 122 NISADEMLYAETDLEESMDKIETINFHEVREVAGIKFWCYHAGHVLGAAMFMIEIAGVKL 181
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++ G
Sbjct: 182 LYTGDFSRQEDRHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREG 241
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 242 RCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIR 301
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I
Sbjct: 302 KAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVII 361
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAK I+SEP+E+T M+G L M V YISFSAH DY QTS F++ L PP++
Sbjct: 362 AGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHV 421
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
ILVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+
Sbjct: 422 ILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADNK 481
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
G+ VSGILVKK F Y I+ P DL +++L+ + + Q
Sbjct: 482 CVQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTVKQ 520
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/508 (61%), Positives = 389/508 (76%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 13 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 132
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SM+KIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 133 TDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 192
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI I ESTYG +H+ R RE RF + +H +++ GR LIP FALGR
Sbjct: 193 RHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGR 252
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LA+KCMAVYQTYI +MN++IR +NPF F
Sbjct: 253 AQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAININNPFVF 312
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+D++N +I GY VEGTLAK
Sbjct: 313 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDRRNGVIIAGYCVEGTLAK 372
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I++EP E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 373 HIMTEPDEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 432
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K G+ VSGIL
Sbjct: 433 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKCIQGQRVSGIL 492
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I+AP DL ++ LS +TQ
Sbjct: 493 VKRNFNYHILAPSDLSNYTDLSMGMVTQ 520
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/517 (60%), Positives = 392/517 (75%), Gaps = 4/517 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
K+ DA V + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 5 KKNDAQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 65 LVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIA 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ E D+ SMDKIE ++FH+ +V GIKFW Y AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 TEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GGR L
Sbjct: 185 GDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWS H E H IPIYYAS LAKKCMAVYQTY+ +MN++IR Q
Sbjct: 245 IPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A +NPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY
Sbjct: 305 AINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAKTI+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP+++LV
Sbjct: 365 CVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLV 424
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EMGRLK L E D +I P+N +VE+YF EK AK +G LA +TP
Sbjct: 425 HGEQNEMGRLKAALQREYEDDPSTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRP 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+ +SG+LVK+ F Y ++AP DL ++ +S + + QR
Sbjct: 485 GQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQR 521
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/496 (62%), Positives = 386/496 (77%), Gaps = 3/496 (0%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 1 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 60
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE
Sbjct: 61 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIET 120
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P
Sbjct: 121 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 180
Query: 210 PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW
Sbjct: 181 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 240
Query: 270 SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F
Sbjct: 241 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 300
Query: 330 SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM 389
D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M
Sbjct: 301 DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTM 360
Query: 390 NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RLK L+ E D
Sbjct: 361 SGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 420
Query: 450 ---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAP 506
+ ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P
Sbjct: 421 NDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSP 480
Query: 507 DDLHIFSQLSTANITQ 522
DL ++ L+ + + Q
Sbjct: 481 CDLSNYTDLAMSTVKQ 496
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/508 (61%), Positives = 393/508 (77%), Gaps = 6/508 (1%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIR--GAGQEVGRSCIILEFKGRKIM-DCGIHPGLEGMDALPYIDLIDPAEID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 63 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 122
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 123 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 182
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 183 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 242
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 243 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 302
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 303 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 362
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 363 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 422
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 423 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 482
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 483 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 510
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/518 (60%), Positives = 394/518 (76%), Gaps = 4/518 (0%)
Query: 9 SLKRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
S +R DA V + E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY
Sbjct: 3 SKRRVDAMVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPY 62
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DY+KVS
Sbjct: 63 IDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYIKVSN 122
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
+S ++ML+ E D+ SM+KIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++L
Sbjct: 123 ISADEMLYTETDLEDSMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLL 182
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR+EDRHL AAE+P PDI I ESTYG +H+ R RE RF + +H +++ GR
Sbjct: 183 YTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGR 242
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LA+KCMAVYQTYI +MN++IR
Sbjct: 243 CLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRK 302
Query: 308 QFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I
Sbjct: 303 AINVNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 362
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
GY VEGTLAK I++EP E+T M+G PL M V YISFSAH DY QTS F++ L PP++I
Sbjct: 363 GYCVEGTLAKHIMTEPDEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 422
Query: 428 LVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
LVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA++
Sbjct: 423 LVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADQKC 482
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
G+ VSGILVK+ F Y I+ P DL ++ LS +TQ
Sbjct: 483 AQGQRVSGILVKRNFNYHILMPSDLCKYTDLSVGTVTQ 520
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/499 (61%), Positives = 388/499 (77%), Gaps = 3/499 (0%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 92 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 151
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE
Sbjct: 152 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIET 211
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P
Sbjct: 212 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 271
Query: 210 PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW
Sbjct: 272 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 331
Query: 270 SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F
Sbjct: 332 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 391
Query: 330 SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM 389
D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M
Sbjct: 392 DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTM 451
Query: 390 NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RLK L+ E D
Sbjct: 452 SGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 511
Query: 450 ---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAP 506
+ ++ P+N ++V + F EK+AK +G LA+K PE G+ +SGILVK+ F Y I++P
Sbjct: 512 NDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRNFNYHILSP 571
Query: 507 DDLHIFSQLSTANITQRIT 525
DL ++ L+ + +TQ +
Sbjct: 572 CDLSNYTDLAMSTVTQTLA 590
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/520 (60%), Positives = 395/520 (75%), Gaps = 5/520 (0%)
Query: 9 SLKRR-DAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S KR+ D V + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP
Sbjct: 1066 SAKRKSDTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALP 1125
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
+ D ++ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DY+KVS
Sbjct: 1126 FVDLVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVS 1185
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ E ML+ E D+ SMDKIE ++FH+ +V GIKFW Y AGHVLGAAMFM++IAGV++
Sbjct: 1186 NIATEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKI 1245
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GG
Sbjct: 1246 LYTGDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGG 1305
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYWS H E H IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 1306 RCLIPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIR 1365
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q A +NPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I
Sbjct: 1366 RQIAINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVII 1425
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAKTI+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++
Sbjct: 1426 AGYCVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHV 1485
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
+LVHGE +EMGRLK L E D + +I P+N +VE+YF EK AK +G LA +T
Sbjct: 1486 VLVHGEQNEMGRLKAALQREYEDDPSTSMEIHNPRNTVAVELYFRGEKTAKVMGTLAMET 1545
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ G+ +SG+LVK+ F Y ++AP DL ++ +S + + QR
Sbjct: 1546 PKPGQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQR 1585
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/518 (59%), Positives = 396/518 (76%), Gaps = 4/518 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D V + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 4 RKNDVQVPAEESDLLVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 63
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+ ID+LLI+HFHLDH +LP+FL+KTTFKGR FMTHATKAIY+ LL+DY+KVS +S
Sbjct: 64 LIEADQIDLLLISHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLSDYIKVSNIS 123
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
+ ML+ E D+ SM+KIEV++FH+ +V G++FW Y AGHVLGAAMFM++IAGV+VLYT
Sbjct: 124 TDQMLYTEADLEASMEKIEVINFHEEKDVGGVRFWAYNAGHVLGAAMFMIEIAGVKVLYT 183
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PDI I ESTYG +H+ R RE RFT +IH +++GGR L
Sbjct: 184 GDFSRQEDRHLMAAEIPTVRPDILITESTYGTHIHEKREDRESRFTGLIHEIVNRGGRCL 243
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWS HPE H IPIYYAS LA+KCMAVYQTYI +MN++IR Q
Sbjct: 244 IPVFALGRAQELLLILDEYWSLHPELHEIPIYYASSLAQKCMAVYQTYINAMNDKIRRQI 303
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A +NPF FKHIS L ID F DVGP V+MASPG +QSGLSR+LF+ WC+D KN C+I GY
Sbjct: 304 AINNPFIFKHISSLKGIDQFEDVGPCVIMASPGMMQSGLSRELFEAWCTDPKNGCIIAGY 363
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK ++SEP+++T M G P+ + V YISFSAH DY QTS F++ L PP+++LV
Sbjct: 364 CVEGTLAKHVLSEPEDITSMAGQKLPMKLSVDYISFSAHTDYQQTSEFIRLLKPPHVVLV 423
Query: 430 HGESHEMGRLKTKLMTELA---DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE++EM RLK L+ E D +I P+N +VE++F EK AK +G LA + P
Sbjct: 424 HGEANEMNRLKAALIREYEHDPDTQIRIYNPRNTAAVELHFKGEKTAKVMGSLAFEKPVE 483
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
G+ +SG+LVK+ F YQI+AP D+ ++ ++ +++TQR+
Sbjct: 484 GQIISGVLVKRNFKYQIVAPSDISKYTDMTVSSVTQRM 521
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/517 (60%), Positives = 391/517 (75%), Gaps = 4/517 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
K+ D V + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 5 KKSDTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLI+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 65 LVEADEIDLLLISHFHLDHCGALPWFLLKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIA 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ E D+ SMDKIE ++FH+ ++ GIKFW Y AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 TEQMLYTESDLETSMDKIETINFHEEKDMFGIKFWAYNAGHVLGAAMFMIEIAGVKILYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GGR L
Sbjct: 185 GDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWS H E H IPIYYAS LAKKCMAVYQTY+ +MN++IR Q
Sbjct: 245 IPVFALGRAQELLLILDEYWSQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A +NPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY
Sbjct: 305 AINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAKTI+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP+++LV
Sbjct: 365 CVEGTLAKTILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHVVLV 424
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EMGRLK L E D +I P+N +VE+YF EK AK +G LA +TP
Sbjct: 425 HGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPRP 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+T+SG+LVK+ F Y ++AP DL ++ +S + + QR
Sbjct: 485 GQTLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVVQR 521
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/508 (60%), Positives = 386/508 (75%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 13 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 72
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 73 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 132
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SM+KIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 133 TDLEESMEKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 192
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI I ESTYG +H+ R RE RF + +H +++ GR LIP FALGR
Sbjct: 193 RHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGR 252
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LA+KCMAVYQTYI +MN++IR +NPF F
Sbjct: 253 AQELLLILDEYWQNHPELHDIPIYYASSLARKCMAVYQTYINAMNDKIRKAININNPFVF 312
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 313 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 372
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP E+T M+G L M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 373 HIMSEPDEITTMSGQKLALKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 432
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G L ++ G+ VSGIL
Sbjct: 433 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLTDRKCVQGQRVSGIL 492
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I+ P DL ++ LS +TQ
Sbjct: 493 VKRNFNYHIVTPSDLPNYTDLSVGTVTQ 520
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/496 (61%), Positives = 386/496 (77%), Gaps = 3/496 (0%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 1 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 60
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+LP+FL+KT+FKGR FMTHATKAIYK LL+D VKVS +S +DML+ E D+ SMDKIE
Sbjct: 61 GALPWFLQKTSFKGRTFMTHATKAIYKWLLSDCVKVSNISADDMLYTETDLEESMDKIET 120
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P
Sbjct: 121 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 180
Query: 210 PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW
Sbjct: 181 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 240
Query: 270 SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
NHPE H+IPIYYAS LAKKCM+VYQTY+ +MN++IR Q +NPF FKHIS L S+D F
Sbjct: 241 QNHPELHDIPIYYASSLAKKCMSVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 300
Query: 330 SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM 389
D+GPS+VMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK ++SEP+E+T M
Sbjct: 301 DDIGPSIVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHVMSEPEEITTM 360
Query: 390 NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
+G P+ M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RLK L+ E D
Sbjct: 361 SGQKLPMKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 420
Query: 450 ---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAP 506
+ ++ P+N ++V + F EK+AK +G LA+K PE G+ +SGILVK+ F Y I++P
Sbjct: 421 NDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADKKPEQGQRISGILVKRNFNYHILSP 480
Query: 507 DDLHIFSQLSTANITQ 522
DL ++ L+ + +TQ
Sbjct: 481 CDLSNYTDLAMSTVTQ 496
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/496 (62%), Positives = 386/496 (77%), Gaps = 3/496 (0%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH
Sbjct: 237 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHC 296
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE
Sbjct: 297 GALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEDSMDKIET 356
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P
Sbjct: 357 INFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIK 416
Query: 210 PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW
Sbjct: 417 PDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYW 476
Query: 270 SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F
Sbjct: 477 QNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHF 536
Query: 330 SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM 389
D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M
Sbjct: 537 DDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTM 596
Query: 390 NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RLK L+ E D
Sbjct: 597 SGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYED 656
Query: 450 ---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAP 506
+ ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P
Sbjct: 657 NDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSP 716
Query: 507 DDLHIFSQLSTANITQ 522
DL ++ L+ + + Q
Sbjct: 717 CDLSNYTDLAMSTVKQ 732
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/506 (61%), Positives = 386/506 (76%), Gaps = 2/506 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
+ + L ITPLGAG EVGRSC + +K K I+ DCGIHP SG+A LPY D +P ID+L
Sbjct: 13 DSELLKITPLGAGQEVGRSCHLLEFKEKKIMLDCGIHPGISGLAGLPYIDFTEPEKIDLL 72
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
L+THFHLDHA LP+FL+KTTFKGRVFMTHATKAIY+ LL+DY+KVS +S ED L+ E D
Sbjct: 73 LVTHFHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRWLLSDYIKVSNISTEDQLYTEAD 132
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM +IE ++FH+ V GIKFWCY AGHVLGAAMFM+ IAGVRVLYTGDYSREEDRH
Sbjct: 133 LEDSMARIETINFHEEKMVGGIKFWCYHAGHVLGAAMFMIQIAGVRVLYTGDYSREEDRH 192
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I E+TYG +H+PR RE RFT+ + +++GGR LIP FALGRAQ
Sbjct: 193 LMAAEIPAVRPDVLITEATYGTHIHEPREEREARFTNTVQDIVNRGGRCLIPVFALGRAQ 252
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILD+YW+NHPE H+IPIYYAS LAKKCMAVYQTY +MN++I+ Q SNPF+FKH
Sbjct: 253 ELLLILDDYWANHPELHDIPIYYASSLAKKCMAVYQTYSNAMNQKIQKQLNISNPFQFKH 312
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ++ F DVGPSVVMASPG +QSGLSR+LF+ WC+D++N ++ GY VEGTLAK I
Sbjct: 313 ISNLKGMEHFDDVGPSVVMASPGMMQSGLSRELFESWCNDRRNGVIVAGYCVEGTLAKHI 372
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+EV M+G PL + V YISFSAHADY Q S F++ + PP+++LVHGE++EM RL
Sbjct: 373 LSEPEEVVSMSGQKIPLKLSVDYISFSAHADYKQCSEFVRAMKPPHVVLVHGEANEMNRL 432
Query: 440 KTKLMTELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
K L E D +I PKN +SV++YF EKMAK +G LA P+ G+ +SGILVK+
Sbjct: 433 KLALNREYEDDPEPIQIHNPKNTESVQLYFKGEKMAKVMGELATTKPKHGDKLSGILVKR 492
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQR 523
F Y I+AP DL + L+ + +TQR
Sbjct: 493 NFNYHILAPSDLSAHTNLTMSTLTQR 518
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/497 (62%), Positives = 382/497 (76%), Gaps = 3/497 (0%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GAG EVGRSC+ + +KGK I+ D GIHP SGM ALPY D I+P ID+LL++HFHLDHA
Sbjct: 6 GAGQEVGRSCIMLEFKGKKIMLDIGIHPGMSGMDALPYTDAIEPEEIDLLLVSHFHLDHA 65
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
LP+FLEKT FKGR FMTHA+KAIY+ LL+DYVKVS ++ E L+ + DI SMDKIE
Sbjct: 66 GGLPWFLEKTGFKGRCFMTHASKAIYRWLLSDYVKVSNIATEQQLYQDSDIEASMDKIET 125
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++FHQ EVNGIKF YTAGHVLGAAMFM++IAGV+VLYTGD+SREEDRHL AAE+P
Sbjct: 126 VNFHQETEVNGIKFCAYTAGHVLGAAMFMIEIAGVKVLYTGDFSREEDRHLMAAEIPNVK 185
Query: 210 PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
PD+ I ESTYG +H+PR RE RFT +I +++GGR LIP FALGRAQELLLILDEYW
Sbjct: 186 PDVLITESTYGTHIHEPREEREGRFTSLISDIVNRGGRCLIPVFALGRAQELLLILDEYW 245
Query: 270 SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
S HPE +IPIYYAS LAKKCM+VYQTYI +MN++I+ Q +NPF FKHIS L S++ F
Sbjct: 246 SQHPELQDIPIYYASSLAKKCMSVYQTYINAMNDKIKRQINTNNPFVFKHISNLKSMEHF 305
Query: 330 SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM 389
D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N C+I GY VEGTLAK I+SEP+E+ M
Sbjct: 306 DDIGPSVVMASPGMMQSGLSRELFENWCTDKRNGCIIAGYCVEGTLAKHILSEPEEIVTM 365
Query: 390 NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
G PL V YISFSAH DY QTS F++ L P +I+LVHGE++EMGRLK L+ E D
Sbjct: 366 GGQKLPLKCSVDYISFSAHTDYKQTSEFVRILKPTHIVLVHGEANEMGRLKAALIREYED 425
Query: 450 ---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAP 506
N I P+N + VE+YF EKMAK +G LA P+ G+ +SGILVK+ F Y IM+P
Sbjct: 426 DPEYNIDIFNPRNTEPVELYFRGEKMAKIVGNLATDRPKQGQQLSGILVKRNFNYHIMSP 485
Query: 507 DDLHIFSQLSTANITQR 523
DL+ +++L+ + +TQR
Sbjct: 486 TDLNNYTELAMSTVTQR 502
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/517 (59%), Positives = 390/517 (75%), Gaps = 4/517 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D V + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 4 RKSDTQVPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKRIMLDCGIHPGLSGMDALPFVD 63
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 64 LVEADEIDLLLISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKVSNIA 123
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ E D+ SMDKIE ++FH+ +V GIKFW Y AGHVLGAAMFM++IAGV++LYT
Sbjct: 124 TEQMLYTESDLETSMDKIETINFHEEKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYT 183
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GGR L
Sbjct: 184 GDFSRQEDRHLMAAEIPNIHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCL 243
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYW H E H IPIYYAS LAKKCMAVYQTY+ +MN++IR Q
Sbjct: 244 IPVFALGRAQELLLILDEYWGQHSELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQI 303
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A +NPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY
Sbjct: 304 AINNPFVFKHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGY 363
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP+++LV
Sbjct: 364 CVEGTLAKGILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRILKPPHVVLV 423
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EMGRLK L E D +I P+N +VE+YF EK AK +G LA +TP+
Sbjct: 424 HGEQNEMGRLKAALQREYEDDPNTTMEIHNPRNTVAVELYFRGEKTAKVMGTLAMETPKP 483
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+ +SG+LVK+ F Y ++AP DL ++ +S + + QR
Sbjct: 484 GQKLSGVLVKRNFNYHMLAPCDLSKYTDMSMSQVIQR 520
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/517 (59%), Positives = 390/517 (75%), Gaps = 4/517 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ DA + + E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SG+ ALP+ D
Sbjct: 8 RKADAQIPAEESDLLSIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGLDALPFVD 67
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+ ID+LLI+HFHLDH +LP+FL+KT FKGR FMTHATKAIY+ LL+DY+KVS ++
Sbjct: 68 IIEADEIDLLLISHFHLDHCGALPWFLQKTNFKGRCFMTHATKAIYRWLLSDYIKVSNIA 127
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ E D+ SMDKIE ++FH+ +V GIKFW Y AGHVLGAAMFM++IAGV++LYT
Sbjct: 128 TEQMLYTEADLESSMDKIETINFHEEKDVYGIKFWAYNAGHVLGAAMFMIEIAGVKILYT 187
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT+++H +++GGR L
Sbjct: 188 GDFSRQEDRHLMAAEIPNVHPDVLITESTYGTHIHEKREDREGRFTNLVHEIVNRGGRCL 247
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWS HPE H IPIYYAS LAKKCMAVYQTY+ +MN++IR Q
Sbjct: 248 IPVFALGRAQELLLILDEYWSQHPELHEIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQI 307
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A +NPF FKHIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY
Sbjct: 308 AINNPFVFKHISNLKGIDHFDDIGPCVVMASPGMMQSGLSRELFESWCTDAKNGVIIAGY 367
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAKTI+SEP+E+T M+G L M V YISFSAH DY QTS F++ L PP++ILV
Sbjct: 368 CVEGTLAKTILSEPEEITTMSGQKLSLKMSVDYISFSAHTDYQQTSEFIRILKPPHVILV 427
Query: 430 HGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK L E D +I P+N +VE+YF EK AK +G LA +TP+
Sbjct: 428 HGEQNEMSRLKAALQREYEDDPSTAMEIHNPRNTVAVELYFRGEKTAKVMGALAMETPKP 487
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+ +SG+LVK+ F Y ++ P DL ++ +S + + QR
Sbjct: 488 GQKLSGVLVKRNFNYHMLDPCDLSKYTDMSISQVIQR 524
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/495 (62%), Positives = 381/495 (76%), Gaps = 3/495 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 3 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S ++ML+ E
Sbjct: 63 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADEMLYAE 122
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 123 TDLEESMDKIETINFHEVREVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 182
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++ GR LIP FALGR
Sbjct: 183 RHLMAAEIPSVKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGR 242
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR +NPF F
Sbjct: 243 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKAININNPFVF 302
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 303 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 362
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G L M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 363 HIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 422
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+ G+ VSGIL
Sbjct: 423 RLKAALIREYEDNEQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADNRCVQGQRVSGIL 482
Query: 495 VKKGFTYQIMAPDDL 509
VKK F Y I+ P DL
Sbjct: 483 VKKNFNYHILNPSDL 497
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/508 (59%), Positives = 392/508 (77%), Gaps = 6/508 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L+ITPLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DTLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F+GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D+ +SM+KIEV+DFH+ EVNGIKFWC+ AGHVLGA MFM++IAGVR+LYTGD+SR EDR
Sbjct: 131 DLEKSMEKIEVIDFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDR 190
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAELP SPD+ I ESTYG Q+H+ R+ REKRFT ++H + +GGR LIPAFALGRA
Sbjct: 191 HLCAAELPTVSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLIPAFALGRA 250
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QELLLILDEYW +HPE +IP+YYAS LAKKCMAVYQT++ MN RI+ Q A +NPF FK
Sbjct: 251 QELLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQKQIALNNPFVFK 310
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
H+S L SID F DVGP VV+ASPG LQ+GLSR+LF+ WC+D KN C+I GY VEGTLAK
Sbjct: 311 HVSNLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYCVEGTLAKH 370
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
I+SEP+E+ MNG + +QV YISFSAH DY QTS F++ L PP+++LVHGE +EM R
Sbjct: 371 ILSEPEEIVAMNGQKLAMRLQVAYISFSAHTDYTQTSDFIRALRPPHLVLVHGEMNEMNR 430
Query: 439 LKTKLMTEL---ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
LK ++ + +D + ++ P+N +SVE++F EK AK +G++A P G +SG+L+
Sbjct: 431 LKAAIIRQYEDESDFHIEVYNPRNTESVELHFRGEKTAKVVGKMAMTPPGDGRVLSGVLI 490
Query: 496 KKGFTYQIMAPDDLHIFSQLSTANITQR 523
++ F Y +M DDL +++LS + +TQR
Sbjct: 491 RRNFNYHLMHADDLSAYTELSNSILTQR 518
>gi|449435478|ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/361 (86%), Positives = 339/361 (93%), Gaps = 3/361 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS+GQPPSLK+RDA +RE DQLIITPLGAGNEVGRSCVYMSYKGK +LFDCGIHPAYS
Sbjct: 1 MASLGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIYKLLL
Sbjct: 61 GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLL 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKF-WCYTAGHVLGAAMFMV 179
D+VKVSKVSVEDML+DEQDI+RSMDKIEV+DFHQTVEVNGI+F WC +LGAAMFMV
Sbjct: 121 DFVKVSKVSVEDMLYDEQDISRSMDKIEVIDFHQTVEVNGIRFLWCXLIRKMLGAAMFMV 180
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
DIAGVRVLYTGDYSREEDRHLRAAE+PQFSPD+CIIESTYGVQLHQPR+IREKRFTDV+H
Sbjct: 181 DIAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVH 240
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
STISQGGRVLIPAFALGRAQELLLILDEYW+NHPE HNIPIYYASPLAK+C+ VY+TY L
Sbjct: 241 STISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTL 300
Query: 300 SMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
SMN+RI+N A SNPF+FK+ISPL SI+ F DVGPSVVMASP GLQSGLSRQLF++WCS+
Sbjct: 301 SMNDRIQN--AKSNPFRFKYISPLKSIEVFKDVGPSVVMASPSGLQSGLSRQLFEMWCSE 358
Query: 360 K 360
K
Sbjct: 359 K 359
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/517 (58%), Positives = 388/517 (75%), Gaps = 4/517 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ D V + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 5 RKADGQVPAEENDLLLIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+ +D+L I+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ +L+DY+KVS +S
Sbjct: 65 LIEADEVDLLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNIS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
+ ML+ E D+ SM+KIE ++FH+ +V G++FW Y AGHVLGAAMFM++IAGV++LYT
Sbjct: 125 TDQMLYTEADLEASMEKIETINFHEERDVMGVRFWAYNAGHVLGAAMFMIEIAGVKILYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR L
Sbjct: 185 GDFSRQEDRHLMAAEIPAMKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVQQGGRCL 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWS +PE PIYYAS LAKKCMAVYQTYI +MN++IR Q
Sbjct: 245 IPVFALGRAQELLLILDEYWSQNPELQEFPIYYASSLAKKCMAVYQTYINAMNDKIRRQI 304
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A +NPF F+HIS L ID F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY
Sbjct: 305 AVNNPFVFRHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFETWCTDPKNGVIIAGY 364
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VEGTLAKTI+SEP+E+T M+G PLNM V YISFSAH DY QTS F++ L P ++ILV
Sbjct: 365 CVEGTLAKTILSEPEEITSMSGQKLPLNMSVDYISFSAHTDYQQTSEFIRILKPAHVILV 424
Query: 430 HGESHEMGRLKTKLMTELA---DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK+ L E + N + PKN +VE+YF EK AK +G LA K+PE
Sbjct: 425 HGEQNEMNRLKSALQREYESDPNANITLYNPKNTHAVELYFRGEKTAKVMGNLAVKSPEE 484
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+ +SG+LVK+ F Y ++A DL ++ +S + +TQR
Sbjct: 485 GQKLSGVLVKRDFKYHLLAASDLSKYTDMSMSVVTQR 521
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/511 (59%), Positives = 388/511 (75%), Gaps = 3/511 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S E D L I PLGAG EVGRSC+ + +KGK ++ DCGIHP SG+ ALP+ D I+ ID
Sbjct: 14 SEENDLLRIRPLGAGQEVGRSCIMLEFKGKNVMLDCGIHPGLSGLDALPFVDLIEADEID 73
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LL+THFHLDH+ +LP+FL KT FKGR FMTHATKAIY+ LL+DY+KVS +S E ML+ +
Sbjct: 74 LLLVTHFHLDHSGALPWFLLKTKFKGRCFMTHATKAIYRWLLSDYIKVSNISTEQMLYTD 133
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SM+KIE ++FH+ E+ GIKFW Y AGHVLGAAMFM++IAGVRVLYTGD+SR+ED
Sbjct: 134 HDLEESMEKIETINFHEEKEIFGIKFWAYHAGHVLGAAMFMIEIAGVRVLYTGDFSRQED 193
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PD+ I ESTYG +H+ R RE RFT++IH+ I++GGR LIP FALGR
Sbjct: 194 RHLMAAEIPSIKPDVLITESTYGTHIHEKREERETRFTNLIHTIINRGGRCLIPVFALGR 253
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILD+YWS HPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q A +NPF F
Sbjct: 254 AQELLLILDDYWSQHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRRQIAINNPFIF 313
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
+HI L ID F D+GP VVMASPG +QSGLSR+LF++WC+D KN +I GY VEGTLAK
Sbjct: 314 RHIHNLKGIDHFDDIGPCVVMASPGMMQSGLSRELFELWCTDSKNGVIIAGYCVEGTLAK 373
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+ ++G PL M V YISFSAH DY QTS F++ L PP+++LVHGE +EM
Sbjct: 374 QILSEPEEIVTLSGQKLPLKMSVDYISFSAHTDYKQTSEFVRALKPPHVVLVHGEQNEMN 433
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L E D + +I P+N +VE+YF EK K +G LA + P+ G+ VSGIL
Sbjct: 434 RLKAALKREYEDDPNTSIEIHNPRNTTAVELYFRGEKTVKVMGALAMQKPQPGDKVSGIL 493
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
VK+ F Y ++AP D+ ++ ++ +T+R++
Sbjct: 494 VKRNFNYHLLAPFDVPKYTDMTITKVTERVS 524
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/519 (58%), Positives = 389/519 (74%), Gaps = 4/519 (0%)
Query: 9 SLKRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
S ++ D V + E D L+I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+
Sbjct: 3 SKRKADGQVPAEENDLLLIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPF 62
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
D I+ +D+L I+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ +L+DY+KVS
Sbjct: 63 VDLIEADEVDLLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSN 122
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
+S E ML+ E D+ SM+KIE ++FH+ +V G++FW Y AGHVLGAAMFM++IAGV++L
Sbjct: 123 ISTEQMLYTEADLEASMEKIETINFHEERDVMGVRFWAYNAGHVLGAAMFMIEIAGVKIL 182
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR
Sbjct: 183 YTGDFSRQEDRHLMAAEIPTMKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVQQGGR 242
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
LIP FALGRAQELLLILDEYWS +PE IPIYYAS LAKKCMAVYQTYI +MN++IR
Sbjct: 243 CLIPVFALGRAQELLLILDEYWSQNPELQEIPIYYASSLAKKCMAVYQTYINAMNDKIRR 302
Query: 308 QFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
Q A +NPF F+HIS L ID F D+GP VVMASPG +QSGLSR+LF+ WCSD KN +I
Sbjct: 303 QIAVNNPFVFRHISNLKGIDHFEDIGPCVVMASPGMMQSGLSRELFETWCSDPKNGVIIA 362
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
GY VEGTLAKT++SEP+E+T M+G LNM V YISFSAH DY QTS F++ L P +++
Sbjct: 363 GYCVEGTLAKTVLSEPEEITSMSGQKLRLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVV 422
Query: 428 LVHGESHEMGRLKTKLMTELA---DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
LVHGE +EM RLK+ L E + N + P+N +VE+YF EK AK +G LA K+P
Sbjct: 423 LVHGEQNEMNRLKSALQREYENDPNANITLHNPRNTHAVELYFRGEKTAKVMGNLAVKSP 482
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
E G+ +SG+LVK+ F Y ++A DL ++ +S + +TQR
Sbjct: 483 EEGQKLSGVLVKRDFKYHLLAASDLSKYTDMSMSVVTQR 521
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/507 (60%), Positives = 384/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ T+ QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVLQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +PE H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKTI
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTI 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLRPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K PEVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGNLAAKNPEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/507 (60%), Positives = 384/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ T+ QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVLQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +PE H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPELHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKTI
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTI 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLRPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K PEVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGNLAAKNPEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/522 (59%), Positives = 391/522 (74%), Gaps = 11/522 (2%)
Query: 8 PSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
PS ++ D E D +I+TPLGAG EVGRSC + +KGKTI+FDCG+HPAYSG AALP+
Sbjct: 26 PSKRKADGDPPLESDLMILTPLGAGQEVGRSCFVLQFKGKTIMFDCGLHPAYSGQAALPF 85
Query: 68 FDEIDPS--AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
FD DP +IDVLL+TH A +PY + KT FKGRVFMTH TKAIYK ++ D+++V
Sbjct: 86 FDSFDPGLDSIDVLLVTH------AGVPYIMTKTNFKGRVFMTHPTKAIYKWMVADFIRV 139
Query: 126 SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 185
S VS ++MLF+E+DI+ +M +IE +D+HQ EVNGIKFWCY AGHVLGA MFMV+IAGV+
Sbjct: 140 SNVSADEMLFNERDIDNTMARIETIDYHQEKEVNGIKFWCYNAGHVLGACMFMVEIAGVK 199
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
+LYTGDYSR EDRHL AE+P +PD+ +ESTYGV++H+PR RE RFT +H + +G
Sbjct: 200 LLYTGDYSRHEDRHLMPAEIPTIAPDVLCVESTYGVRVHEPRVEREGRFTKDVHDIVMRG 259
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G+ L+P FALGRAQELLLILDE+W + P HNIPIYYAS LA+KCMA+YQTYI MNERI
Sbjct: 260 GKCLLPVFALGRAQELLLILDEFWESKPALHNIPIYYASSLARKCMAIYQTYINQMNERI 319
Query: 306 RNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
R QFA SNPF FKHI+ + S + GP V+MASPG LQ+GLSR LF+ WC D +N +
Sbjct: 320 RRQFAISNPFMFKHIASIKSASEIDQSGPMVMMASPGMLQNGLSRDLFEQWCPDSRNGVI 379
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY VEGTLAK+I+S PKEV + G PL M V Y+SFSAHAD+AQTS F+ L PP+
Sbjct: 380 VTGYSVEGTLAKSILSAPKEVPSLTGQKLPLRMSVTYVSFSAHADFAQTSEFIDALKPPH 439
Query: 426 IILVHGESHEMGRLKTKLMTEL---ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
I+LVHGE+ EMGRLK L + A+ ++ TP N QSV++YF E+MAK IG LA
Sbjct: 440 IVLVHGEATEMGRLKAALTRKYEDHAEIKIEVHTPANAQSVQLYFRGERMAKAIGSLAAT 499
Query: 483 TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
PE + VSG+LVK+GFT+Q+MAP D+ F++L T+ + QR+
Sbjct: 500 QPEDLQAVSGVLVKRGFTHQLMAPGDITEFTELKTSVVRQRL 541
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/511 (59%), Positives = 383/511 (74%), Gaps = 4/511 (0%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+S E D L + PLGAG EVGRSC+ + +KGK IL D GIHP +G+ ALP+ D+ID I
Sbjct: 1 MSEEEDILTMKPLGAGQEVGRSCMIIEFKGKKILLDMGIHPGMNGVDALPFVDQIDADEI 60
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--SVEDML 134
D+LL++HFHLDH +LP+FL+KTTFKGR FMTHATKAIY+ LL D +KVS + + + L
Sbjct: 61 DLLLVSHFHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADCIKVSNIGSTSSNNL 120
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ E D+ SMDKIEV++FH+ E+NGI+FWCY AGHVLGAAMF ++IAGV++LYTGD+SR
Sbjct: 121 YTEADLEASMDKIEVINFHEEKEINGIRFWCYHAGHVLGAAMFFIEIAGVKILYTGDFSR 180
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
+EDRHL +AE+P PD+ IIESTYG +H+ R RE RFT ++ +++GGR LIP FA
Sbjct: 181 QEDRHLMSAEIPSVKPDVLIIESTYGTHIHEKRQDREHRFTHLVQEIVTRGGRCLIPVFA 240
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQELLLILDEYW HPE H+IPIYYAS LAKKCMAVYQTY+ +MNERIR Q A SNP
Sbjct: 241 LGRAQELLLILDEYWGLHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIRRQIAISNP 300
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F FKHIS L SID F DVGP V+MA+PG +QSGLSR+LF+ WC D KN +I GY VEGT
Sbjct: 301 FVFKHISNLKSIDHFDDVGPCVIMATPGMMQSGLSRELFEAWCGDTKNGVIIAGYCVEGT 360
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LAK I+SEP+EVT MNG PL M V YISFSAH DY QTS F++ L PPNIILVHGE +
Sbjct: 361 LAKQILSEPQEVTSMNGQKMPLKMSVDYISFSAHTDYQQTSEFIRALKPPNIILVHGEQN 420
Query: 435 EMGRLKTKLMTEL--ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
EM RLK + E D + P N +V + F E++AK +G LA + PE G+ +SG
Sbjct: 421 EMSRLKAAIEREYEGEDLKMDVYNPANGHAVTLKFRGERLAKVMGTLAMEKPEAGQHISG 480
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
IL+K+ F + ++AP+DL ++ L + +TQ+
Sbjct: 481 ILIKRNFNFHLLAPEDLSKYTDLVQSTVTQK 511
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/522 (59%), Positives = 390/522 (74%), Gaps = 8/522 (1%)
Query: 6 QPPSLKRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA 64
QP S DA V E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM A
Sbjct: 3 QPTS----DARVPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDA 58
Query: 65 LPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK 124
LPY D I+ ID+L I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K
Sbjct: 59 LPYVDLIEADEIDLLFISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIK 118
Query: 125 VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
+S +S E ML+ + D+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+
Sbjct: 119 ISNISTEQMLYTDADLEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGI 178
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
++LYTGD+SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT ++ T+ Q
Sbjct: 179 KILYTGDFSRQEDRHLMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKTVQQ 238
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GGR LIP FALGRAQELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+R
Sbjct: 239 GGRCLIPVFALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDR 298
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
IR Q A +NPF F+HIS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN
Sbjct: 299 IRRQIAVNNPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGV 358
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
+I GY VEGTLAKTI+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P
Sbjct: 359 IIAGYCVEGTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRMLKPT 418
Query: 425 NIILVHGESHEMGRLKTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
+++LVHGE +EM RLK L E AD +T K P+N +V++YF EK AK +G LA
Sbjct: 419 HVVLVHGEQNEMSRLKLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGNLAA 478
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
K PEVG +SG+LVK+ F Y ++AP DL ++ +S + +TQR
Sbjct: 479 KNPEVGSKLSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/520 (58%), Positives = 394/520 (75%), Gaps = 7/520 (1%)
Query: 11 KRRDAPVSRE-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ DA V + D L TPLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D
Sbjct: 8 EKMDAEVPEDTSDSLTFTPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVD 67
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV- 128
+D +D+LL+THFHLDH ++P+ LEKT F+GR FMTHATKAIY++L+ DY+KVSK
Sbjct: 68 FVDCEELDLLLVTHFHLDHCGAVPWLLEKTAFRGRCFMTHATKAIYRMLIGDYLKVSKYG 127
Query: 129 --SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
S +L+ E+D+ +SM+KIEV+DFH+ EVNGIKFWCY AGHVLGA MFM++IAGVRV
Sbjct: 128 GGSDNRLLYTEEDLEKSMEKIEVIDFHEQKEVNGIKFWCYVAGHVLGACMFMIEIAGVRV 187
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR EDRHL AAELP SPD+ I ESTYG Q+H+ R REKRFT +H + +GG
Sbjct: 188 LYTGDFSRLEDRHLCAAELPTVSPDVLICESTYGTQVHEGREEREKRFTSTVHEIVGRGG 247
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIPAFALGRAQELLLILDEYW HPE +IP+YYAS LAKKCMAVYQT++ MN RI+
Sbjct: 248 RCLIPAFALGRAQELLLILDEYWEAHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQ 307
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q A +NPF F+H+S L SI+ F DVGP VV+ASPG LQ+GLSR+LF+ WC+D KN C+I
Sbjct: 308 KQIALNNPFVFRHVSNLKSIEHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCII 367
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
GY VEGTLAK I+SEP+E+ M+G + +QV YISFSAH DY QTS F++ + P++
Sbjct: 368 AGYCVEGTLAKHILSEPEEIVTMSGQKLAMRLQVAYISFSAHTDYLQTSNFVRSMRSPHL 427
Query: 427 ILVHGESHEMGRLKTKLMTEL---ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
+LVHGE +EM RLK ++ + AD + ++ P+N +SVE++F EK AK +G++A
Sbjct: 428 VLVHGEINEMNRLKAAIIRQYEDDADFHIEVHNPRNTESVELHFRGEKTAKVVGKMAMSA 487
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ GE +SG+LV++ F Y +M DDL +++LS + +TQ+
Sbjct: 488 PKDGEMLSGVLVRRNFNYHLMRADDLSAYTELSNSVLTQK 527
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/511 (59%), Positives = 386/511 (75%), Gaps = 5/511 (0%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ E D ++I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D ID I
Sbjct: 15 LKEESDLMVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQI 74
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D+L I+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ +L+DY+KVS +S + ML+
Sbjct: 75 DLLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNISTDQMLYT 134
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
E D+ SM+KIE ++FH+ ++ G++FW Y AGHVLGAAMFM++IAG+RVLYTGD+SR+E
Sbjct: 135 EADLEASMEKIETINFHEERDILGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQE 194
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AAE+P PD+ I ESTYG +H+ R RE RFT ++ ++QGGR LIP FALG
Sbjct: 195 DRHLMAAEIPAMRPDVLITESTYGTHIHEKREDRENRFTSLVQKIVTQGGRCLIPVFALG 254
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQELLLILDEYWS +P+ IPIYYAS LAKKCMAVYQTYI +MN++IR Q A +NPF
Sbjct: 255 RAQELLLILDEYWSQNPDLQEIPIYYASSLAKKCMAVYQTYINAMNDKIRRQIAINNPFV 314
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
F+ IS L ID F DVGP VVMASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLA
Sbjct: 315 FRFISNLKGIDHFDDVGPCVVMASPGMMQSGLSRELFETWCTDPKNGVIIAGYCVEGTLA 374
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
KTI+ EP+E+T MNG PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM
Sbjct: 375 KTILFEPEEITSMNGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLQPTHVVLVHGEQNEM 434
Query: 437 GRLKTKLMTELADCNTKI-IT---PKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
GRLK+ LM E + N KI IT P+N Q VE+YF EK AK +G LA P + +SG
Sbjct: 435 GRLKSALMREY-EANPKIQITFHNPRNTQPVELYFRGEKTAKVMGTLAVGEPADMQRLSG 493
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LVK+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 VLVKREFKYHLLAPTDLSKYTDMSMSIVTQR 524
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/513 (58%), Positives = 385/513 (75%), Gaps = 10/513 (1%)
Query: 20 EGDQLIITPL--------GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
E D+LII PL GAG EVGRSC+ + +KGK+IL DCGIHP +G+ ALP+ D I
Sbjct: 8 EDDELIIKPLYEFQCKVLGAGQEVGRSCILIQFKGKSILLDCGIHPGLNGVDALPFVDTI 67
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
D +D+LL+THFHLDH LP+FLEKTTF+GR FMTHATKAIY ++L+DYVKVS + ++
Sbjct: 68 DCEKVDLLLVTHFHLDHCGGLPWFLEKTTFRGRCFMTHATKAIYPIILSDYVKVSNIGLD 127
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
ML+ E ++ +SMDKIE++DFH+ EVNGIKFWCY AGHVLGA MFM++IAGVR+LYTGD
Sbjct: 128 QMLYSEDELEKSMDKIELIDFHEQKEVNGIKFWCYVAGHVLGACMFMIEIAGVRILYTGD 187
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSR EDRHL AAE+P PD+ I ESTYG Q+H+ R RE RFT ++++ +S+GGR LIP
Sbjct: 188 YSRLEDRHLCAAEVPSIRPDVLIAESTYGTQIHENREDREHRFTSMVYTIVSRGGRCLIP 247
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
FALGRAQELLLILDE+W+ H E NIPI++AS LAKKCMAVYQT+I MN+ I+ Q A
Sbjct: 248 VFALGRAQELLLILDEFWTKHAELQNIPIFFASSLAKKCMAVYQTFISGMNQNIQKQIAV 307
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF FKH+ L SID F D+GP VV+ASPG LQSGLSR+LF++WC+D KN C+I GY V
Sbjct: 308 QNPFLFKHVRSLRSIDFFEDIGPCVVLASPGMLQSGLSRELFEMWCTDTKNGCIIAGYCV 367
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAK I+SEPKE+ +NG L MQV Y+SFSAHADY QTS F++ L PPN++ VHG
Sbjct: 368 EGTLAKHILSEPKEIVGLNGAKLALRMQVAYVSFSAHADYKQTSEFIRRLKPPNLVFVHG 427
Query: 432 ESHEMGRLKTKLMTELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
E+ EM RLK +M E D T + +P+N + V ++F EK K +G++A K E G+
Sbjct: 428 EATEMIRLKAAIMREYEDDPTCMQSFSPRNTEPVSLHFRGEKTTKVVGQMATKKAEHGDV 487
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VSG+++++ F Y +M +D+ ++ LS NI Q
Sbjct: 488 VSGVMIRRNFDYHLMHSNDVSSYTDLSKGNILQ 520
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/519 (59%), Positives = 396/519 (76%), Gaps = 5/519 (0%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L ITP+G+GNEVGRSCV + YKGK I+FDCG+HPAYSG+ +LP+FD
Sbjct: 17 LKRPLKGGTEDDDILEITPIGSGNEVGRSCVLLKYKGKKIMFDCGVHPAYSGLVSLPFFD 76
Query: 70 --EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
E D ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL D+VKV+
Sbjct: 77 SVESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFSGRVFMTHPTKAIYGMLLADFVKVTT 136
Query: 128 VSVED-MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ +D MLFDE+D+N S++KIE + + Q VE NGIK C+ AGHVLGAAMFMV+IAGV++
Sbjct: 137 ITRDDDMLFDEKDLNSSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMVEIAGVKI 196
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AE P D+ IIESTYGVQ+H+PR REKRFT +H +S+GG
Sbjct: 197 LYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTTSVHDVVSRGG 256
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW +P H IPIYYAS LAKKCM VY+TYI MN+R+R
Sbjct: 257 RCLIPVFALGRAQELLLILDEYWIANPSLHGIPIYYASALAKKCMGVYRTYINMMNDRVR 316
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
QF SNPF+FK+IS + I+ F D GP V MASPG LQSGLSRQLF+ WC+ K+N VI
Sbjct: 317 AQFDVSNPFEFKYISNIKGIESFDDNGPCVFMASPGMLQSGLSRQLFERWCTSKRNGVVI 376
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
PGY VEGTLAK I+SEP E+T ++ ++ PLN+ V Y+SFSAH+D+ QTS F++E+ PP++
Sbjct: 377 PGYSVEGTLAKHIMSEPTEITRLDNVSVPLNLSVSYVSFSAHSDFLQTSEFIQEIQPPHV 436
Query: 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
+LVHG+++EM RL+ L+ N ++TPKN QSV + F EK+AKT+G + P+
Sbjct: 437 VLVHGDANEMSRLRNALIGRFKSIN--VLTPKNAQSVSLEFRPEKVAKTLGSVLTSAPQQ 494
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
G+ V GILV K F + I+AP+D+H ++ L T I Q++T
Sbjct: 495 GDLVQGILVTKDFIHHIVAPNDIHNYTNLKTNTIKQKLT 533
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/507 (59%), Positives = 383/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 16 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 75
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+F+GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 76 FISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 135
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 136 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 195
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 196 LMAAEVPPKKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVMQGGRCLIPVFALGRAQ 255
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 256 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 315
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKTI
Sbjct: 316 ISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTI 375
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 376 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRMLRPNHVVLVHGEQNEMSRL 435
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K PEVG +SG+LVK
Sbjct: 436 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGHLAAKKPEVGSKLSGVLVK 495
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 496 RDFKYHLLAPSDLGKYTDMSMSVVTQR 522
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/507 (59%), Positives = 382/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKT+
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTV 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K EVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/511 (59%), Positives = 385/511 (75%), Gaps = 5/511 (0%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ E D ++I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D ID I
Sbjct: 13 LKEESDLMVIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDADQI 72
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D+L I+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ +L+DY+KVS +S + ML+
Sbjct: 73 DLLFISHFHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKVSNISTDQMLYT 132
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
E D+ SM+KIE ++FH+ ++ G++FW Y AGHVLGAAMFM++IAG+RVLYTGD+SR+E
Sbjct: 133 EADLEASMEKIETINFHEERDILGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQE 192
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALG
Sbjct: 193 DRHLMAAEIPAMRPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALG 252
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQELLLILDEYWS +P+ IPIYYAS LAKKCMAVYQTYI +MN++IR Q A +NPF
Sbjct: 253 RAQELLLILDEYWSQNPDLQEIPIYYASSLAKKCMAVYQTYINAMNDKIRRQIAINNPFV 312
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
F+ IS L ID F DVGP VVMASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLA
Sbjct: 313 FRFISNLKGIDHFDDVGPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLA 372
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
KTI+ EP+E+T MNG PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM
Sbjct: 373 KTILFEPEEITSMNGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLQPTHVVLVHGEQNEM 432
Query: 437 GRLKTKLMTELADCNTKI-IT---PKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
GRLK+ LM E + N K+ IT P+N Q VE+YF EK AK +G LA P + +SG
Sbjct: 433 GRLKSALMREY-EANPKVQITFHNPRNTQPVELYFRGEKTAKVMGTLAVGEPADCQRLSG 491
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LVK+ F Y ++AP DL ++ +S + +TQ+
Sbjct: 492 VLVKREFKYHLLAPTDLSRYTDMSMSIVTQK 522
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/507 (59%), Positives = 383/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 16 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 75
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+F+GR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 76 FISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 135
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 136 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 195
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 196 LMAAEVPPKKPDVLITESTYGTHIHEKREDRESRFTSLVQKIVMQGGRCLIPVFALGRAQ 255
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 256 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 315
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKTI
Sbjct: 316 ISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTI 375
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 376 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRMLRPNHVVLVHGEQNEMSRL 435
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K PEVG +SG+LVK
Sbjct: 436 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGHLAAKKPEVGSKLSGVLVK 495
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 496 RDFKYHLLAPSDLGKYTDMSMSVVTQR 522
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/507 (59%), Positives = 382/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKT+
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTV 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K EVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/507 (59%), Positives = 381/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAK +
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAV 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K EVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/507 (59%), Positives = 381/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHIHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAK +
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAV 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLKPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K EVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/507 (59%), Positives = 381/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 14 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 73
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+FKGR FMTHATKAIY+ +L+DY+K+S +S E ML+ E D
Sbjct: 74 FISHFHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKISNISTEQMLYTEAD 133
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 134 LEASMEKIETINFHEERDVMGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 193
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 194 LMAAEVPPMKPDVLITESTYGTHVHEKREDRENRFTSLVQKIVQQGGRCLIPVFALGRAQ 253
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 254 ELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAK +
Sbjct: 314 ISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKAV 373
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 374 LSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLRPTHVVLVHGEQNEMSRL 433
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K EVG +SG+LVK
Sbjct: 434 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGSLAAKNSEVGSKLSGVLVK 493
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 494 RDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/507 (59%), Positives = 382/507 (75%), Gaps = 3/507 (0%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+ ID+L
Sbjct: 16 ESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEADEIDLL 75
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
I+HFHLDH +LP+FL KT+F+GR FMTHATKAIY+ +L+DY+K+S +S + ML+ E D
Sbjct: 76 FISHFHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKISNISTDQMLYTEAD 135
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+SR+EDRH
Sbjct: 136 LEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRH 195
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PD+ I ESTYG +H+ R RE RFT ++ + QGGR LIP FALGRAQ
Sbjct: 196 LMAAEVPPKKPDVLITESTYGTHIHEKREDRESRFTTLVQKIVQQGGRCLIPVFALGRAQ 255
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDEYWS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +NPF F+H
Sbjct: 256 ELLLILDEYWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVNNPFVFRH 315
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKTI
Sbjct: 316 ISNLKGIDHFDDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKTI 375
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+ ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE +EM RL
Sbjct: 376 LSEPEEIITLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRLLRPNHVVLVHGEQNEMSRL 435
Query: 440 KTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
K L E AD +T K P+N +V++YF EK AK +G LA K PEVG +SG+LVK
Sbjct: 436 KLALQREYEADASTDIKFYNPRNTHAVDLYFRGEKTAKVMGHLAAKKPEVGSKLSGVLVK 495
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F Y ++AP DL ++ +S + +TQR
Sbjct: 496 RDFKYHLLAPSDLGKYTDMSMSVVTQR 522
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/508 (58%), Positives = 385/508 (75%), Gaps = 12/508 (2%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L+ITPLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DTLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F+GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D+ + V+DFH+ EVNGIKFWC+ AGHVLGA MFM++IAGVR+LYTGD+SR EDR
Sbjct: 131 DLEK------VIDFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAELP SPD+ I ESTYG Q+H+ R+ REKRFT ++H + +GGR LIPAFALGRA
Sbjct: 185 HLCAAELPTVSPDVLICESTYGTQVHESRDEREKRFTSIVHEIVGRGGRCLIPAFALGRA 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QELLLILDEYW +HPE +IP+YYAS LAKKCMAVYQT++ MN RI+ Q A +NPF FK
Sbjct: 245 QELLLILDEYWESHPELQDIPVYYASSLAKKCMAVYQTFVSGMNSRIQKQIALNNPFVFK 304
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
H+S L SID F DVGP VV+ASPG LQ+GLSR+LF+ WC+D KN C+I GY VEGTLAK
Sbjct: 305 HVSNLKSIDHFEDVGPCVVLASPGMLQNGLSRELFENWCTDSKNGCIIAGYCVEGTLAKH 364
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
I+SEP+E+ MNG + +QV YISFSAH DY QTS F++ L PP+++LVHGE +EM R
Sbjct: 365 ILSEPEEIVAMNGQKLAMRLQVAYISFSAHTDYTQTSDFIRALRPPHLVLVHGEMNEMNR 424
Query: 439 LKTKLMTEL---ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
LK ++ + +D + ++ P+N +SVE++F EK AK +G++A P G +SG+L+
Sbjct: 425 LKAAIIRQYEDESDFHIEVYNPRNTESVELHFRGEKTAKVVGKMAMTPPGDGRVLSGVLI 484
Query: 496 KKGFTYQIMAPDDLHIFSQLSTANITQR 523
++ F Y +M DDL ++ LS + +TQR
Sbjct: 485 RRNFNYHLMHADDLSAYTDLSNSILTQR 512
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/504 (59%), Positives = 384/504 (76%), Gaps = 2/504 (0%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
G++L++TPLGAGNEVGRS V + +KGKT+LFDCGIHPA++GMA+LP+FD I+PS ID++L
Sbjct: 36 GEKLVVTPLGAGNEVGRSAVLLQFKGKTVLFDCGIHPAFTGMASLPFFDTIEPSEIDLVL 95
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+THFHLDH +LPYF E T F+GRVFMTH TKAIYKLLLTD+VKVS V V+D LF EQ++
Sbjct: 96 VTHFHLDHCGALPYFTEHTNFQGRVFMTHPTKAIYKLLLTDFVKVSDVHVDDQLFTEQNL 155
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S+ KIE++D+HQ +E NGIKFWCY AGHVLGAAMFMV+IAGVRVLYTGD+SR+ DRHL
Sbjct: 156 LDSLKKIELIDYHQELEHNGIKFWCYNAGHVLGAAMFMVEIAGVRVLYTGDFSRQPDRHL 215
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AE P SPD+ I+ESTYG+Q+H+ ++ REKRFT ++ + +GGR LIP FALGRAQE
Sbjct: 216 LGAETPTMSPDVLIVESTYGIQVHESQSEREKRFTQMVTEIVKRGGRCLIPVFALGRAQE 275
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
LLLILDE+W H + +IPIYYAS LAKKCM ++QTYI MN++IR QF NPF FKHI
Sbjct: 276 LLLILDEFWETHQDLQHIPIYYASSLAKKCMTIFQTYINMMNDKIRKQFDIHNPFVFKHI 335
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
S L SI+DF D GP V+MASPG LQSGLS++LF++WC D KN +I GY V+GTLAK I+
Sbjct: 336 SNLRSIEDFQDNGPCVIMASPGMLQSGLSKELFELWCQDAKNGVIIAGYSVDGTLAKKIM 395
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
SEP+ VTL NG T PL M V ISFSAH+D AQT F+ + PP+IILVHG+ RLK
Sbjct: 396 SEPETVTLSNGNTVPLRMSVRTISFSAHSDKAQTEEFIGTIKPPHIILVHGDLANCNRLK 455
Query: 441 TKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFT 500
L ++ D +K+ PKNC S+ + F EK AK +G+LA E G+ ++GIL+ F
Sbjct: 456 HSLQSKFTD--SKVYAPKNCTSINIMFQGEKRAKVLGQLAVTKYEDGDEINGILLHHNFQ 513
Query: 501 YQIMAPDDLHIFSQLSTANITQRI 524
+ ++ DL ++S + + + Q +
Sbjct: 514 HLLLNEKDLKLYSDVCCSGVKQTL 537
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/475 (62%), Positives = 369/475 (77%), Gaps = 3/475 (0%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHA 110
DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHA
Sbjct: 5 LDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHA 64
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGH 170
TKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGH
Sbjct: 65 TKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGH 124
Query: 171 VLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR 230
VLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R R
Sbjct: 125 VLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREER 184
Query: 231 EKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKC 290
E RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H IPIYYAS LAKKC
Sbjct: 185 EARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHEIPIYYASSLAKKC 244
Query: 291 MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR
Sbjct: 245 MAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSR 304
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH D
Sbjct: 305 ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTD 364
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYF 467
Y QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F
Sbjct: 365 YQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 424
Query: 468 NSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + +TQ
Sbjct: 425 RGEKLAKVMGSLADKKPEQGQRVSGILVKRNFNYHILSPCDLSSYTDLAMSTVTQ 479
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/514 (58%), Positives = 384/514 (74%), Gaps = 4/514 (0%)
Query: 14 DAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
DA V E D L I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALPY D I+
Sbjct: 7 DARVPDEESDLLQIKPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIE 66
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
ID+L I+HFH+DH +LP+FL KT+FKGR FMTHATKAIY+ +L+D++K+S +S +
Sbjct: 67 ADEIDLLFISHFHIDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDFIKISNISTDQ 126
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
ML+ E D+ SM+KIE ++FH+ +V G++F Y AGHVLGAAMFM++IAG+++LYTGD+
Sbjct: 127 MLYTEADLEASMEKIETINFHEERDVMGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDF 186
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
SR+EDRHL AAE+P PD+ I ESTYG +H+ R RE RFT ++ T+ QGGR LIP
Sbjct: 187 SRQEDRHLMAAEVPPTKPDVLITESTYGTHIHEKREDRESRFTSLVQKTVMQGGRCLIPV 246
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
FALGRAQELLLILDE+WS +P+ H IPIYYAS LAKKCMAVYQTYI +MN+RIR Q A +
Sbjct: 247 FALGRAQELLLILDEFWSQNPDLHEIPIYYASSLAKKCMAVYQTYINAMNDRIRRQIAVN 306
Query: 313 NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
NPF F+HIS L ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN ++ GY VE
Sbjct: 307 NPFVFRHISNLKGIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIVAGYCVE 366
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GTLAKTI+SEP+E+T ++G PLNM V YISFSAH DY QTS F++ L P +++LVHGE
Sbjct: 367 GTLAKTILSEPEEITTLSGQKLPLNMSVDYISFSAHTDYQQTSEFIRMLRPNHVVLVHGE 426
Query: 433 SHEMGRLKTKLMTEL-ADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
+EM RLK L E AD T K P+N +V++YF EK AK +G LA PE+
Sbjct: 427 QNEMSRLKLALQREYEADATTDIKFYNPRNTHAVDLYFRGEKTAKVMGHLAANKPELASK 486
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+SG+LVK+ F Y ++AP DL ++ +S + +TQR
Sbjct: 487 LSGVLVKRDFKYHLLAPSDLGKYTDMSMSVVTQR 520
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/519 (57%), Positives = 395/519 (76%), Gaps = 5/519 (0%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L ITP+G+G+EVGRSCV + YKGK ++FDCG+HPAYSG+ +LP+FD
Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFD 81
Query: 70 EI--DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
I D ID+LL++HFHLDHAA++PYF+ KT FKGRVFMTH TKAIY +LL+DYVKVS
Sbjct: 82 SIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSN 141
Query: 128 VSVED-MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ +D MLFD+ D++RS++KIE + + Q VE NGIK C+ AGHVLGAAMFM++IAGV++
Sbjct: 142 ITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKI 201
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AE P D+ IIESTYGVQ+H+PR REKRFT +H + + G
Sbjct: 202 LYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNG 261
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+ LIP FALGRAQELLLILDEYW +P+ H++PIYYAS LAKKCM VY+TYI MN+R+R
Sbjct: 262 KCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVR 321
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
QF SNPF+FKHI + I+ F D GP V MASPG LQSGLSRQLF+ WCSDK+N VI
Sbjct: 322 AQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVI 381
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
PGY VEGTLAK I+SEP E+T ++ + PLN+ V Y+SFSAH+D+ QTS F++E+ PP++
Sbjct: 382 PGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHV 441
Query: 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
+LVHG+++EM RL+ L+ + N ++TPKN SV + F EK+AKT+G + P+
Sbjct: 442 VLVHGDANEMSRLRQSLVAKFKTIN--VLTPKNAMSVALEFRPEKVAKTLGSIITNPPKQ 499
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ + GILV K FT+ I++ D+H ++ L T I Q++T
Sbjct: 500 NDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLT 538
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/476 (62%), Positives = 370/476 (77%), Gaps = 3/476 (0%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG 169
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AG
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 120
Query: 170 HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNI 229
HVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R
Sbjct: 121 HVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE 180
Query: 230 REKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKK 289
RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKK
Sbjct: 181 REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKK 240
Query: 290 CMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLS 349
CMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLS
Sbjct: 241 CMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLS 300
Query: 350 RQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHA 409
R+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH
Sbjct: 301 RELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT 360
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMY 466
DY QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V +
Sbjct: 361 DYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 420
Query: 467 FNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
F EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 421 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 476
>gi|449435476|ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/343 (88%), Positives = 325/343 (94%), Gaps = 2/343 (0%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MASVGQPPSLK+RDA +RE DQLIITPLGAGNEVGRSCVYMSYK K +LFDCGIHPAYS
Sbjct: 1 MASVGQPPSLKKRDASSTREEDQLIITPLGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALPYFDEIDPS IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT+ATKAIYKLLL+
Sbjct: 61 GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
D+VKVSKVSVEDML+DEQDINRSMDKIEV+DFHQTVEVNGI+FWCYTAGHVLGAAMFMVD
Sbjct: 121 DFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEVNGIRFWCYTAGHVLGAAMFMVD 180
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAGVRVLYTGDYSREEDRHLRAAE+PQFSPD+CIIESTYGVQLHQPR+IREKRFTDV+HS
Sbjct: 181 IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDVCIIESTYGVQLHQPRHIREKRFTDVVHS 240
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TISQGGRVLIPAFALGRAQELLLILDEYW+NHPE HNIPIYYASPLAK+C+ VY+TY LS
Sbjct: 241 TISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKRCLTVYETYTLS 300
Query: 301 MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGG 343
MN+RI+N A SNPF+FK+ISPL SI+ F DVGPSVVMA G
Sbjct: 301 MNDRIQN--AKSNPFRFKYISPLKSIEVFKDVGPSVVMARENG 341
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/476 (62%), Positives = 370/476 (77%), Gaps = 3/476 (0%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG 169
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AG
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 120
Query: 170 HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNI 229
HVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R
Sbjct: 121 HVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE 180
Query: 230 REKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKK 289
RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKK
Sbjct: 181 REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKK 240
Query: 290 CMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLS 349
CMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLS
Sbjct: 241 CMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLS 300
Query: 350 RQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHA 409
R+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH
Sbjct: 301 RELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT 360
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMY 466
DY QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V +
Sbjct: 361 DYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 420
Query: 467 FNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
F EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 421 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 476
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 296/475 (62%), Positives = 369/475 (77%), Gaps = 3/475 (0%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHA 110
DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHA
Sbjct: 3 LDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHA 62
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGH 170
TKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGH
Sbjct: 63 TKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGH 122
Query: 171 VLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR 230
VLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R R
Sbjct: 123 VLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREER 182
Query: 231 EKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKC 290
E RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKC
Sbjct: 183 EARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKC 242
Query: 291 MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR
Sbjct: 243 MAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSR 302
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH D
Sbjct: 303 ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTD 362
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYF 467
Y QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F
Sbjct: 363 YQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 422
Query: 468 NSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 423 RGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 477
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/476 (61%), Positives = 370/476 (77%), Gaps = 3/476 (0%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTH
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG 169
ATKAIY+ LL+DYVKVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AG
Sbjct: 61 ATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAG 120
Query: 170 HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNI 229
HVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R
Sbjct: 121 HVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREE 180
Query: 230 REKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKK 289
RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKK
Sbjct: 181 REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKK 240
Query: 290 CMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLS 349
CMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +Q+GLS
Sbjct: 241 CMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLS 300
Query: 350 RQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHA 409
R+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH
Sbjct: 301 RELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHT 360
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMY 466
DY QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V +
Sbjct: 361 DYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLN 420
Query: 467 FNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
F EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 421 FRGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 476
>gi|384499309|gb|EIE89800.1| hypothetical protein RO3G_14511 [Rhizopus delemar RA 99-880]
Length = 654
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/506 (60%), Positives = 384/506 (75%), Gaps = 6/506 (1%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L ITPLG+GNEVGRS + M YKGKTIL D GIHPAY+G+A+LP+FDE+DP++IDVL
Sbjct: 3 ENDLLKITPLGSGNEVGRSSILMEYKGKTILLDAGIHPAYNGLASLPFFDEMDPASIDVL 62
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
L+THFH+DHAAS+PY + K GRVFMTH TKAI+K LL+DY++VS + ED L+ E+D
Sbjct: 63 LVTHFHVDHAASVPYLMGK----GRVFMTHPTKAIFKWLLSDYLRVSHIGEEDQLYTEED 118
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ S +IE +D+HQ VEV GIKF Y AGHVLGAAMF+++IAGV+VLYTGDYSREEDRH
Sbjct: 119 LLNSFHRIEAIDYHQQVEVEGIKFTAYNAGHVLGAAMFLIEIAGVKVLYTGDYSREEDRH 178
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE P+ S D+ I ESTYGVQ H+PR +E RFT ++H+ +++GGR L+P FALGRAQ
Sbjct: 179 LMAAEKPEGSVDVLITESTYGVQSHEPRIAKETRFTSLVHNIVTRGGRCLMPVFALGRAQ 238
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLILDE+W HPE +IPIYYAS LAK+CMAVYQTYI MN RIR QFA SNPF FKH
Sbjct: 239 ELLLILDEFWEAHPELDSIPIYYASSLAKRCMAVYQTYINMMNARIRKQFAISNPFVFKH 298
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
IS L +++ F D GP V+MASPG LQ+GLSR+LF+ W DKKN VI GY VE TLA+
Sbjct: 299 ISNLKNVEQFEDSGPCVMMASPGMLQNGLSRELFERWAPDKKNGLVITGYCVENTLARQA 358
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
++EP + M+G PL M V YISFSAH D+ Q S F+ E+ P++ILVHGE++ M RL
Sbjct: 359 MNEPSDFQAMDGRKVPLKMSVDYISFSAHVDFTQNSKFIDEVKAPHVILVHGEANAMYRL 418
Query: 440 KTKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
K+ L ++ ++ N I TPKNC +V+++F EKMAKTIGRLA K P + ++G+L+ K
Sbjct: 419 KSALQSKYSEKEENVTIYTPKNCDTVKLHFRGEKMAKTIGRLAAKYPTENQALNGVLLVK 478
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQR 523
F IM+P+DL+ L T ITQR
Sbjct: 479 DFQLNIMSPEDLNELGGLITTVITQR 504
>gi|328773999|gb|EGF84036.1| hypothetical protein BATDEDRAFT_9083 [Batrachochytrium
dendrobatidis JAM81]
Length = 669
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/523 (58%), Positives = 393/523 (75%), Gaps = 10/523 (1%)
Query: 7 PPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
PP+ + PV+ E D L ITPLGAGNEVGRSC+ + +KGKTI+ DCG+HPA+SG+AALP
Sbjct: 44 PPT----EIPVTSEEDILKITPLGAGNEVGRSCILLEFKGKTIMLDCGLHPAHSGLAALP 99
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
+FD IDP ++D++LITHFH+DHAA LPYF+EKT FKGRVFMTH T+AIYK L++DY+K+S
Sbjct: 100 FFDNIDPESVDLVLITHFHVDHAAGLPYFMEKTAFKGRVFMTHPTRAIYKWLVSDYIKIS 159
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
+S +D L+ ++D+ S +IEV+D+HQ V++ GIKF Y AGHVLGAAMF+++IAGVR+
Sbjct: 160 SLSPDDQLYSDKDLANSYGRIEVIDYHQEVDLGGIKFTPYYAGHVLGAAMFLLEIAGVRL 219
Query: 187 LYTGDYSREEDRHLRAAELPQFS--PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
LYTGDYSREEDRHL AAE P S P++ I EST+GVQ +PR RE+RFT ++H+ + +
Sbjct: 220 LYTGDYSREEDRHLMAAERPPSSIIPEVLICESTFGVQTLEPRLDREQRFTRMVHTIVKR 279
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GGR L+P FALGRAQELLLILDEYW H + H++PIYYAS +AKKCMAVYQTY MN R
Sbjct: 280 GGRCLLPVFALGRAQELLLILDEYWHAHADLHSVPIYYASAIAKKCMAVYQTYTNMMNGR 339
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
IR SNPF+FKHIS L SI F DVGP V+MASPG LQSGLSR+L ++WC DK+N
Sbjct: 340 IREMAKISNPFQFKHISNLKSIAQFDDVGPCVMMASPGMLQSGLSRELLELWCVDKRNGV 399
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
+IPGYVVEGTL K I+S+P E+ MNG PL + V YISFSAH DY + S F++ +
Sbjct: 400 IIPGYVVEGTLGKQILSQPDEIPAMNGSKLPLRLSVEYISFSAHVDYRENSEFIEMVGSQ 459
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
N+ILVHG+S+EMGRL++ L + A+ I TP+NC++VE+ F EKMAKT +
Sbjct: 460 NLILVHGDSNEMGRLRSALQSRYAEREVPLHIYTPRNCETVELVFRGEKMAKTTDVSVQI 519
Query: 483 TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
G + GILV K F +QI++P DL FS L T ++ Q+ T
Sbjct: 520 KD--GTVLKGILVSKDFAFQIVSPGDLDTFSTLHTVSLIQKQT 560
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 294/467 (62%), Positives = 363/467 (77%), Gaps = 7/467 (1%)
Query: 18 SREGDQLIITPL----GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
+ E DQL+I PL GAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP
Sbjct: 6 AEESDQLLIRPLFRGGGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDP 65
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DM
Sbjct: 66 AEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM 125
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+S
Sbjct: 126 LYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFS 185
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP F
Sbjct: 186 RQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVF 245
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +N
Sbjct: 246 ALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININN 305
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEG
Sbjct: 306 PFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 365
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
TLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE
Sbjct: 366 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 425
Query: 434 HEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIG 477
+EM RLK L+ E D + ++ P+N ++V + F EK+AK G
Sbjct: 426 NEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVKG 472
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 299/515 (58%), Positives = 384/515 (74%), Gaps = 8/515 (1%)
Query: 17 VSREGDQ-----LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
VS GD + I PLGAGNEVGRSC+ + +KGKTI+ DCG+HP YSG +LP+FD +
Sbjct: 6 VSEAGDSDERHIMRIMPLGAGNEVGRSCIILKFKGKTIMLDCGVHPGYSGHGSLPFFDGV 65
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+ ID+LL+THFH+DH A+LP+F EKT FKGRVFMTH TKA+ +++L D+++VS +SV+
Sbjct: 66 EAEEIDLLLVTHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNISVD 125
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
D ++D++D+N + K+E++DFHQ NGIKF Y AGHVLGA M++++I GV+VLYTGD
Sbjct: 126 DQIYDDKDLNNCVAKVEIIDFHQEKTHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGD 185
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YS E DRHL AAELP SPD+ I+ESTYGVQ+HQ RE RFT + S I +GGR LIP
Sbjct: 186 YSLENDRHLMAAELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVESVIRRGGRCLIP 245
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
FALGR QELLLILDE+W HP+ H+IPIY+AS LA K + VYQTYI MN+RIR Q A
Sbjct: 246 VFALGRTQELLLILDEHWQAHPDLHDIPIYFASKLAAKALRVYQTYINMMNDRIRKQIAV 305
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPF F HIS L S+DDF D GP VVMASPG LQSG+SRQLF+ WCSDK+NAC+IPGYVV
Sbjct: 306 SNPFLFDHISNLKSMDDFDDSGPCVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGYVV 365
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAK I+SEP E+ M+G P+N V YISFSAHAD+ TS F+++L+PPNI+LVHG
Sbjct: 366 EGTLAKKILSEPTEIVAMDGRVLPMNCTVEYISFSAHADFVGTSGFVEKLVPPNIVLVHG 425
Query: 432 ESHEMGRLKTKLMTELADCNT---KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
E +EM RLK+ L + D T I TP N Q + + F EK+AK IG++A + P+ G+
Sbjct: 426 EKNEMMRLKSALNKKFHDPKTYRPNIFTPANMQEIVLEFKGEKIAKAIGKIASEQPQQGK 485
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+SG+LV+ +M +DL ++++L + ITQR
Sbjct: 486 VISGLLVEHDSFIHLMEEEDLPLYTKLVSGKITQR 520
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 290/463 (62%), Positives = 361/463 (77%), Gaps = 3/463 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E QL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP G ALPY D IDP+ ID
Sbjct: 6 AEESVQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGTDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V Y+SFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYVSFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIG 477
RLK L+ E D + ++ P+N ++V + F EK+AK G
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVQG 468
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/509 (59%), Positives = 392/509 (77%), Gaps = 8/509 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ L ITPLGAGNEVGRSCV ++YK KTI+FDCG+HPAYSG+A+LP+FDE+DP +ID++LI
Sbjct: 22 ETLQITPLGAGNEVGRSCVLLTYKNKTIMFDCGVHPAYSGLASLPFFDEMDPRSIDLILI 81
Query: 82 THFHLDHAASLPYFLEKTTFK--GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
THFHLDH A+LPY LEKT RVFMTH TKAIYK LL+D+V+VS S ED+L+ EQD
Sbjct: 82 THFHLDHCAALPYLLEKTNCNPNARVFMTHPTKAIYKTLLSDFVRVS--SNEDVLYSEQD 139
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
++R+M +IE LD+HQ + NGI+FW Y AGHVLGAAMF+V+IAGVRVLYTGD+SR+EDRH
Sbjct: 140 LSRTMKRIETLDYHQEMNWNGIRFWAYNAGHVLGAAMFLVEIAGVRVLYTGDFSRQEDRH 199
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L+ AE+P F PDI I+ESTYGVQ+H+PR IRE RFT + + +GGRVL+P FALGRAQ
Sbjct: 200 LKEAEIPPFPPDIIIVESTYGVQVHEPRKIREARFTQKVAEIVRRGGRVLLPVFALGRAQ 259
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLIL+EYW HP+ +IPIYYAS LAK+CM+VYQTYI MN+ IR ++ SNPF FK+
Sbjct: 260 ELLLILEEYWEAHPDLQDIPIYYASSLAKRCMSVYQTYINMMNDNIRKRYEVSNPFAFKY 319
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ + +I DF D GP V MASPG LQSGLSR+L + WC+D++N ++PGY VEGTLAK I
Sbjct: 320 VLNVKNIQDFDDSGPCVFMASPGMLQSGLSRELCERWCTDRRNGIILPGYSVEGTLAKHI 379
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP +T ++G PL V YI+FSAH+D+ QTS F+ +I+LVHGE EMGRL
Sbjct: 380 LSEPSTITRLDGKEVPLRCSVDYITFSAHSDFLQTSEFIDRSRSGHIVLVHGEMTEMGRL 439
Query: 440 KTKLMTELADC----NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
+ L + N +I TPKNCQ+V + F +EK+AK IG +A++ PE G ++SGILV
Sbjct: 440 RNALDLKYNKGQSVPNIRIYTPKNCQTVRLTFRAEKVAKAIGEVAKRKPEDGASMSGILV 499
Query: 496 KKGFTYQIMAPDDLHIFSQLSTANITQRI 524
K+ F Y +M+P++L+ ++ L + I QR+
Sbjct: 500 KRDFNYTLMSPNELNTYTGLKVSRIQQRL 528
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 289/453 (63%), Positives = 357/453 (78%), Gaps = 3/453 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYF 467
RLK L+ E D + ++ P+N ++V + F
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 296/517 (57%), Positives = 387/517 (74%), Gaps = 4/517 (0%)
Query: 11 KRRDAPVSREGDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
KRR A + + ++ I PLGAGNEVGRSC+ + +KGKTI+ DCG+HP YSG +LP+FD
Sbjct: 3 KRRLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD 62
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLITHFH+DH A+LP+F EKT FKGRVFMTH TKA+ +++L D+++VS +S
Sbjct: 63 GVEAEEIDLLLITHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNIS 122
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
V+D ++D++D+N + K+E++DFHQ + NGIKF Y AGHVLGA M++++I GV+VLYT
Sbjct: 123 VDDQIYDDKDLNNCVSKVEIIDFHQEIMHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYT 182
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYS E DRHL AAELP SPD+ I+ESTYGVQ+HQ RE RFT + + + +GGR L
Sbjct: 183 GDYSLENDRHLMAAELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVEAVVRRGGRCL 242
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGR QELLLILDE+W +HP+ +IPIY+AS LA K + VYQTYI MN+RIR Q
Sbjct: 243 IPVFALGRTQELLLILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTYINMMNDRIRKQI 302
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A SNPF+F+HIS L S+DDF D GPSVVMASPG LQSG+SRQLF+ WCSDK+NAC+IPGY
Sbjct: 303 AISNPFQFEHISNLKSMDDFDDSGPSVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGY 362
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VVEGTLAK I+SEP E+ ++G P+N V YISFSAHAD+ TS F+++L PPNI+LV
Sbjct: 363 VVEGTLAKKILSEPTEIAALDGRIIPMNCTVEYISFSAHADFVGTSGFVEKLTPPNIVLV 422
Query: 430 HGESHEMGRLKTKLMTELADCNT---KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK+ L + D I TP N Q + + F EK+AK IG LA P+
Sbjct: 423 HGEKNEMMRLKSALNKKFNDPKVYHPSISTPANMQEIVLEFKGEKIAKAIGGLASDQPKN 482
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+ +SG+LV+ +M +DL +++L + +ITQ+
Sbjct: 483 GKVISGLLVEVDSQTHLMDKEDLSTYTKLISGSITQK 519
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/517 (57%), Positives = 385/517 (74%), Gaps = 4/517 (0%)
Query: 11 KRRDAPVSREGDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
KRR A + + ++ I PLGAGNEVGRSC+ + +KGKTI+ DCG+HP YSG +LP+FD
Sbjct: 3 KRRLAEEAADERHIMRIMPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFD 62
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
++ ID+LLITHFH+DH A+LP+F EKT FKGRVFMTH TKA+ +++L D+++VS +S
Sbjct: 63 GVEAEEIDLLLITHFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRVSNIS 122
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
V+D ++D++D+N + K+E++DFHQ + NGIKF Y AGHVLGA M++++I GV+VLYT
Sbjct: 123 VDDQIYDDKDLNNCVSKVEIIDFHQEMMHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYT 182
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYS E DRHL AAELP SPD+ I+ESTYGVQ+HQ RE RFT + + + +GGR L
Sbjct: 183 GDYSLENDRHLMAAELPACSPDVLIVESTYGVQVHQSVVEREGRFTGQVEAVVRRGGRCL 242
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGR QELLLILDE+W +HP+ +IPIY+AS LA K + VYQTYI MN+RIR Q
Sbjct: 243 IPVFALGRTQELLLILDEHWRSHPDLQDIPIYFASKLAAKALRVYQTYINMMNDRIRKQI 302
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
A SNPF+F+HIS L S+DDF D GPSVVMASPG LQSG+SRQLF+ WCSDK+NAC+IPGY
Sbjct: 303 AISNPFQFEHISNLKSMDDFDDSGPSVVMASPGMLQSGVSRQLFERWCSDKRNACLIPGY 362
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
VVEGTLAK I+SEP E+ ++G P+N V YISFSAHAD+ TS F+++L PPNI+LV
Sbjct: 363 VVEGTLAKKILSEPTEIAALDGRIIPMNCTVEYISFSAHADFVGTSGFVEKLTPPNIVLV 422
Query: 430 HGESHEMGRLKTKLMTELADCNT---KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
HGE +EM RLK+ L + D I TP N Q + + F EK+AK IG LA P+
Sbjct: 423 HGEKNEMMRLKSALNKKFNDPKVYHPSISTPANMQEIVLEFKGEKIAKAIGGLASNQPKN 482
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G +SG+LV+ +M +DL +++L + ITQ+
Sbjct: 483 GTIISGLLVEVDSQTHLMDKEDLSTYTKLISGTITQK 519
>gi|312080023|ref|XP_003142424.1| cpsf3-prov protein [Loa loa]
Length = 715
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 299/537 (55%), Positives = 385/537 (71%), Gaps = 43/537 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L+ITPLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DSLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F+GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D+ +SM+KIEV+DFH+ EVNGIKFWC+ AGHVLGA MFM++IAGVR+LYTGD+SR EDR
Sbjct: 131 DLEKSMEKIEVIDFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDR 190
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAELP SPD+ I ESTYG Q+H+ R+ REK + +GGR LIPAFALGRA
Sbjct: 191 HLCAAELPTVSPDVLICESTYGTQVHESRDEREK--------VVGRGGRCLIPAFALGRA 242
Query: 259 QELLLILDEYWSNHPEFHNIP---------------------------IYY--ASPLAKK 289
QELLLILDEYW HPE +IP I++ AS LAKK
Sbjct: 243 QELLLILDEYWEAHPELQDIPNNPVCCNADEMTVVEPNRSVIVGIDLLIFFDHASSLAKK 302
Query: 290 CMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLS 349
CMAVYQT++ MN RI+ Q A +NPF FKH+S L SID F DVGP VV+ASPG LQ+GLS
Sbjct: 303 CMAVYQTFVSGMNSRIQKQIALNNPFVFKHVSNLKSIDHFEDVGPCVVLASPGMLQNGLS 362
Query: 350 RQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHA 409
R+LF+ WC+D KN C+I GY VEGTLAK I+SEP+E+ MNG + +QV YISFSAH
Sbjct: 363 RELFENWCTDSKNGCIIAGYCVEGTLAKHILSEPEEIVAMNGQKLAMRLQVAYISFSAHT 422
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL---ADCNTKIITPKNCQSVEMY 466
DY QTS F++ L PP+++LVHGE +EM RLK ++ + +D + ++ P+N +SVE++
Sbjct: 423 DYTQTSDFIRALRPPHLVLVHGEMNEMNRLKAAIIRQYEDESDFHIEVYNPRNTESVELH 482
Query: 467 FNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
F EK AK +G++A TP G +SG+L+++ F Y +M DDL ++ LS + +TQR
Sbjct: 483 FRGEKTAKVVGKMAMTTPGDGRILSGVLIRRNFNYHLMHADDLSAYTDLSNSILTQR 539
>gi|328704356|ref|XP_001945120.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Acyrthosiphon pisum]
Length = 694
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/505 (58%), Positives = 380/505 (75%), Gaps = 2/505 (0%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L I PLGAG EVGRSC+ M +KGK I+ DCGIHP G+ ALP+ D I+ + ID+LL
Sbjct: 19 NDKLTIKPLGAGQEVGRSCIVMEFKGKKIMLDCGIHPGLQGLDALPFVDLIEANEIDLLL 78
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
ITHFHLDH+ +LP+FL KT FKG+ +MTHATKAIY+ LL+DY+KVS + E ML+ E D+
Sbjct: 79 ITHFHLDHSGALPWFLLKTKFKGKCYMTHATKAIYRWLLSDYIKVSNIGTEQMLYTEADL 138
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
+SMD+IE ++FH+ +V GI+F Y AGHVLGAAMFM++IAGV+VLYTGD+SR+EDRHL
Sbjct: 139 EKSMDRIETINFHEEKDVGGIRFCAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHL 198
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AAE+P P+I I ESTYG +H+ R RE+RFT +++ +++GGR LIP FALGRAQE
Sbjct: 199 MAAEIPPSRPEILITESTYGTHIHEKREERERRFTMLVNDIVNRGGRCLIPVFALGRAQE 258
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
LLLILDEYW HPE H+IPIYYAS LAKKCMAVYQTYI +MN+RI+ Q A +NPF FKHI
Sbjct: 259 LLLILDEYWGLHPELHDIPIYYASSLAKKCMAVYQTYINAMNDRIKRQIAVNNPFVFKHI 318
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ L SID F D+GP V+MASPG ++SGLSR+LF++WC+D KN +I GYVV+GTLAK I+
Sbjct: 319 TNLKSIDHFEDIGPCVIMASPGVMESGLSRELFEMWCTDSKNGVIIAGYVVQGTLAKAIL 378
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
SEP+++T M G PL M V YISFSAH DY QT F+ L PP+I+LVHGE +EM RLK
Sbjct: 379 SEPEDITTMTGQKLPLKMSVDYISFSAHTDYQQTREFINILKPPHIVLVHGEQNEMQRLK 438
Query: 441 TKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
+ L+ E + + K+ P+N V+ YF EK AK +G +A + P +SG+L+KK
Sbjct: 439 SALVREYEENSEDIKVYNPRNTVGVDFYFTGEKTAKVMGEIAVEKPAEDNVLSGVLLKKN 498
Query: 499 FTYQIMAPDDLHIFSQLSTANITQR 523
F+Y I A +D+ +S + + I Q+
Sbjct: 499 FSYHIFASEDIPRYSDMLLSEIQQK 523
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 295/512 (57%), Positives = 374/512 (73%), Gaps = 6/512 (1%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L I PLGAG EVGRSC+ +++KGK I+ DCGIHP +LP+ D I D D+
Sbjct: 9 ESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDL 68
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS--VEDMLFD 136
+LI+HFHLDH LP+ L KT K + +MTHATKAIY+ LL D+V+VS + +L+
Sbjct: 69 ILISHFHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLYS 128
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
++DI S+D I+ +DFHQ +EVNGIKF Y AGHVLGAAMF+++IAGV++LYTGD+SR+E
Sbjct: 129 DRDIVASLDHIDTIDFHQELEVNGIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQE 188
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AE+P PD+ I E+TYG+ +H R RE RFT ++H +++GGR LIPAFALG
Sbjct: 189 DRHLMCAEIPPIRPDVLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALG 248
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQEL+LILDEYW NHPE H+IPIYYAS LA+KCMAVYQTYI +MNERIRNQ AN+NPF
Sbjct: 249 RAQELMLILDEYWDNHPELHDIPIYYASQLARKCMAVYQTYIYAMNERIRNQLANNNPFC 308
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
F+HIS L SI+ F D GP VVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLA
Sbjct: 309 FRHISNLKSIEHFDDSGPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLA 368
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
K I+S P EV M+G PL V YISFSAH DY QTS F++EL P ++LVHGE +EM
Sbjct: 369 KQILSLPTEVPTMSGQMLPLKCSVDYISFSAHTDYQQTSAFIRELKPSYVVLVHGEQNEM 428
Query: 437 GRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGI 493
RL L E D C +I TPKNC V + F EK+AK +G LA P+ G+T+SG+
Sbjct: 429 LRLCGALQREYEDDETCRLEIFTPKNCVPVNLRFRGEKVAKILGSLAHSAPKEGQTISGV 488
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
LVKK F Y I+ P +L +++L+T + Q I+
Sbjct: 489 LVKKNFAYHILTPGELPTYTELATTVVNQVIS 520
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 287/462 (62%), Positives = 361/462 (78%), Gaps = 3/462 (0%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYV
Sbjct: 1 ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV 60
Query: 124 KVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 183
KVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAG
Sbjct: 61 KVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAG 120
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
V++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H ++
Sbjct: 121 VKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVN 180
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN+
Sbjct: 181 RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMND 240
Query: 304 RIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N
Sbjct: 241 KIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNG 300
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
+I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L P
Sbjct: 301 VIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKP 360
Query: 424 PNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
P+++LVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA
Sbjct: 361 PHVVLVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLA 420
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 421 DKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 462
>gi|32566029|ref|NP_502553.2| Protein CPSF-3 [Caenorhabditis elegans]
gi|26985920|emb|CAC44310.2| Protein CPSF-3 [Caenorhabditis elegans]
Length = 707
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 285/508 (56%), Positives = 375/508 (73%), Gaps = 4/508 (0%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L TPLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID+LLI
Sbjct: 9 DSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
THFHLDH +LP+ L+KT F+G+ FMTHATKAIY++LL DYV++SK D L+ E D
Sbjct: 69 THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDYVRISKYGGPDRNQLYTEDD 128
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ +SM KIE +DF + EVNGI+FW Y AGHVLGA FM++IAGVRVLYTGD+S EDRH
Sbjct: 129 LEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRH 188
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P +P + I ESTYG Q H+ R +REKRFT ++H +++GGR LIPAFA+G AQ
Sbjct: 189 LCAAEIPPITPQVLITESTYGTQTHEDRAVREKRFTQMVHDIVTRGGRCLIPAFAIGPAQ 248
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
EL+LILDEYW +H E H+IP+YYAS LAKKCM+VYQT++ MN RI+ Q A NPF FKH
Sbjct: 249 ELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAVKNPFIFKH 308
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+S L +D F D GP VV+A+PG LQSG SR+LF+ WC D KN C+I GY VEGTLAK I
Sbjct: 309 VSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFESWCPDTKNGCIIAGYCVEGTLAKHI 368
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+SEP+E+ ++G P+ MQV Y+SFSAH DY QTS F+K L PP+++LVHGE HEM RL
Sbjct: 369 LSEPEEIVSLSGEKLPMRMQVGYVSFSAHTDYHQTSNFVKALKPPHLVLVHGELHEMSRL 428
Query: 440 KTKLMTELADCN--TKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
K+ + + D N ++ P+N + +++ F EK AK IG+LA++ PE ET+SG+LVK
Sbjct: 429 KSGIERQFQDDNIPIEVHNPRNTERLQLQFRGEKTAKVIGKLAQRVPENNETISGVLVKN 488
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQRIT 525
F+Y IM P++L ++ L +++ QR++
Sbjct: 489 NFSYSIMVPEELGSYTSLRISSLEQRMS 516
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/512 (57%), Positives = 374/512 (73%), Gaps = 6/512 (1%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L I PLGAG EVGRSC+ +++KGK I+ DCGIHP +LP+ D I D D+
Sbjct: 9 ESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQTTDL 68
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS--VEDMLFD 136
+LI+HFHLDH LP+ L KT K + +MTHATKAIY+ LL D+V+VS + +L+
Sbjct: 69 ILISHFHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRVSNSGGLPDQLLYS 128
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
++DI S+D I+ +DFHQ +EVNGIKF Y AGHVLGAAMF+++IAGV++LYTGD+SR+E
Sbjct: 129 DRDIVASLDHIDTIDFHQELEVNGIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQE 188
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AE+P PD+ I E+TYG+ +H R RE RFT ++H +++GGR LIPAFALG
Sbjct: 189 DRHLMCAEIPPIRPDVLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCLIPAFALG 248
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQEL+LILDEYW NHPE H+IPIYYAS LA+KCMAVYQTYI +MNERIRNQ A++NPF
Sbjct: 249 RAQELMLILDEYWDNHPELHDIPIYYASQLARKCMAVYQTYIYAMNERIRNQLASNNPFC 308
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
F+HIS L SI+ F D GP VVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLA
Sbjct: 309 FRHISNLKSIEHFDDSGPCVVMASPGMMQSGLSRELFENWCTDKRNGVIIAGYCVEGTLA 368
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
K I+S P EV M+G PL V YISFSAH DY QTS F++EL P ++LVHGE +EM
Sbjct: 369 KQILSLPTEVPTMSGQMLPLKCSVDYISFSAHTDYQQTSAFIRELKPSYVVLVHGEQNEM 428
Query: 437 GRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGI 493
RL L E D C +I TPKNC V + F EK+AK +G LA P+ G+T+SG+
Sbjct: 429 LRLCGALQREYEDDETCRLEIFTPKNCVPVNLRFRGEKVAKILGSLAHSAPKEGQTISGV 488
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
LVKK F Y I+ P +L +++L+T + Q I+
Sbjct: 489 LVKKNFAYHILTPGELPTYTELATTVVNQVIS 520
>gi|268552491|ref|XP_002634228.1| Hypothetical protein CBG01798 [Caenorhabditis briggsae]
Length = 722
Score = 625 bits (1613), Expect = e-176, Method: Compositional matrix adjust.
Identities = 286/512 (55%), Positives = 375/512 (73%), Gaps = 4/512 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S D L TPLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID
Sbjct: 5 SDNSDALSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENID 64
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLF 135
+LLITHFHLDH +LP+ L+KT F+G+ FMTHATKAIY++LL DYV++SK D L+
Sbjct: 65 LLLITHFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADRNQLY 124
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ +SM KIE +DF + EVNGI+FW Y AGHVLGA FM++IAGVRVLYTGD+S
Sbjct: 125 TEDDLEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCL 184
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
EDRHL AAE+P SP + I ESTYG Q H+ R++REKRFT ++H +++GGR LIPAFA+
Sbjct: 185 EDRHLCAAEIPPVSPQVLITESTYGTQTHEDRSVREKRFTQMVHDIVTRGGRCLIPAFAI 244
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
G AQEL+LILDEYW H E H+IP+YYAS LAKKCM+VYQT++ MN RI+ Q A NPF
Sbjct: 245 GPAQELMLILDEYWEAHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAIKNPF 304
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKH+S L +D F D GP VV+A+PG LQSG SR+LF+ WCSD KN C+I GY VEGTL
Sbjct: 305 IFKHVSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYCVEGTL 364
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
AK I++EP+E+ ++G P+ MQV Y+SFSAH D+ QTS F+K L PP+++LVHGE HE
Sbjct: 365 AKHILTEPEEIVSLSGEKLPMRMQVGYVSFSAHTDFNQTSNFVKTLKPPHLVLVHGELHE 424
Query: 436 MGRLKTKLMTELADCN--TKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGI 493
M RLK + D N ++ P+N + +E+ F EK AK IG+LAE+ PE + +SG+
Sbjct: 425 MSRLKAGIERLFQDINIPIEVHNPRNTERLELQFRGEKTAKVIGKLAERMPENNKIISGV 484
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
LVK F+Y +MA D+L ++ L T+++ Q+++
Sbjct: 485 LVKNNFSYSLMAKDELGSYTSLRTSSLEQKMS 516
>gi|308492421|ref|XP_003108401.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
gi|308249249|gb|EFO93201.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
Length = 712
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 282/508 (55%), Positives = 375/508 (73%), Gaps = 4/508 (0%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L TPLG+G EVGRSC + YKGK ++ DCG+HP G+ ALP+ D ++ ID+LLI
Sbjct: 9 DSLSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDLLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
THFHLDH +LP+ L+KT F+G+ FMTHATKAIY++LL DYV++SK D L+ E D
Sbjct: 69 THFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDYVRISKYGGADRNQLYTEDD 128
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ +SM KIE +DF + EVNGI+FW Y AGHVLGA FM++IAGVRVLYTGD+S EDRH
Sbjct: 129 LEKSMAKIETIDFREQKEVNGIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLEDRH 188
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P +P + I ESTYG Q H+ R++REKRFT ++H +++GGR LIPAFA+G AQ
Sbjct: 189 LCAAEIPPITPQVLITESTYGTQTHEERSVREKRFTQMVHDIVTRGGRCLIPAFAIGPAQ 248
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
EL+LILDEYW +H E H+IP+YYAS LAKKCM+VYQT++ MN RI+ Q A NPF FKH
Sbjct: 249 ELMLILDEYWESHQELHDIPVYYASSLAKKCMSVYQTFVNGMNSRIQKQIAVKNPFIFKH 308
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+S L +D F D GP VV+A+PG LQSG SR+LF+ WCSD KN C+I GY VEGTLA+ I
Sbjct: 309 VSTLRGMDQFEDAGPCVVLATPGMLQSGFSRELFENWCSDSKNGCIIAGYCVEGTLARHI 368
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
++EP+E+ ++G P+ MQV Y+SFSAH D+ QTS F+K L PP+++LVHGE HEM RL
Sbjct: 369 LTEPEEIVSLSGEKLPMRMQVGYVSFSAHTDFNQTSNFVKALKPPHLVLVHGELHEMSRL 428
Query: 440 KTKLMTELADCN--TKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
K + + D N ++ P+N + +++ F EK AK IG+LA+K PE GE +SG+LVK
Sbjct: 429 KAGIERQFQDANIPIEVHNPRNTERLDLQFRGEKTAKVIGKLAQKMPENGEIISGVLVKN 488
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQRIT 525
F+Y +M ++L + L T+++ Q+++
Sbjct: 489 NFSYSLMVYEELGSCTSLRTSSLEQKMS 516
>gi|313244184|emb|CBY15021.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/508 (56%), Positives = 376/508 (74%), Gaps = 4/508 (0%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
++L+IT LGAG EVGRSC + +K ++ D GIHP +G+ LP+ D DP ID+LLI
Sbjct: 8 EELVITMLGAGQEVGRSCHLIEFKVLELIEDMGIHPGINGLNGLPFMDYTDPDKIDILLI 67
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
+HFHLDH LP+FL KT FKGRVFMT+ATKAIY+ LL+DY+KVS V VE++LF E+D+
Sbjct: 68 SHFHLDHCGGLPWFLTKTQFKGRVFMTYATKAIYRWLLSDYIKVSNVGVEELLFTEKDLE 127
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
++D+IE + FH +NGIKF Y AGHVLGAA FMV+IAGV+VL+TGD+SREEDRHL
Sbjct: 128 ETLDRIETVKFHAEKHINGIKFCAYHAGHVLGAAQFMVEIAGVKVLFTGDFSREEDRHLM 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE+P PDI I+ESTYG LH+ R RE RFT VIH I++GGR LIP FALGRAQEL
Sbjct: 188 AAEVPPQKPDILIMESTYGTHLHEKREEREHRFTSVIHDIINRGGRCLIPVFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLILD+YW+ HPE H+IPIYYAS LAKKCM+VYQTY +MN +I+ NPF+F+HIS
Sbjct: 248 LLILDDYWAQHPELHDIPIYYASTLAKKCMSVYQTYTNAMNSKIQKAITTRNPFQFRHIS 307
Query: 322 PLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
L ++ F D+GPSVV+ASPG +QSGLSR+LF+ WC++K+N ++ GY VEGTLA I
Sbjct: 308 NLKGMEAFDDDIGPSVVLASPGMMQSGLSRELFEKWCTNKRNGVILAGYAVEGTLAHQIK 367
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
+EP E+ M+G PL MQV Y+SFSAHADY Q S F++E+ PP+I+LVHGE++EMGRLK
Sbjct: 368 TEPDEIVTMSGQKLPLKMQVEYMSFSAHADYRQISEFVREIKPPHIVLVHGEANEMGRLK 427
Query: 441 TKLMTEL---ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
+L E A+ + I P+N + V+ +F EK AK +G LA P+ + + GILV+K
Sbjct: 428 RQLDIEYEHDAETDITIHMPRNAEKVKFHFRGEKNAKVVGSLAHYLPKQEDEIEGILVRK 487
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQRIT 525
F Y+I+A +DL ++L T + QR++
Sbjct: 488 NFNYKIVAAEDLKTHAELETTQVKQRLS 515
>gi|313216448|emb|CBY37756.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/508 (56%), Positives = 376/508 (74%), Gaps = 4/508 (0%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
++L+IT LGAG EVGRSC + +K ++ D GIHP +G+ LP+ D DP ID+LLI
Sbjct: 8 EELVITMLGAGQEVGRSCHLIEFKVLELIQDMGIHPGINGLNGLPFMDYTDPDKIDILLI 67
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
+HFHLDH LP+FL KT FKGRVFMT+ATKAIY+ LL+DY+KVS V VE++LF E+D+
Sbjct: 68 SHFHLDHCGGLPWFLTKTQFKGRVFMTYATKAIYRWLLSDYIKVSNVGVEELLFTEKDLE 127
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
++D+IE + FH +NGIKF Y AGHVLGAA FMV+IAGV+VL+TGD+SREEDRHL
Sbjct: 128 ETLDRIETVKFHAEKHINGIKFCAYHAGHVLGAAQFMVEIAGVKVLFTGDFSREEDRHLM 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE+P PDI I+ESTYG LH+ R RE RFT VIH I++GGR LIP FALGRAQEL
Sbjct: 188 AAEVPPQKPDILIMESTYGTHLHEKREEREHRFTSVIHDIINRGGRCLIPVFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLILD+YW+ HPE H+IPIYYAS LAKKCM+VYQTY +MN +I+ NPF+F+HIS
Sbjct: 248 LLILDDYWAQHPELHDIPIYYASTLAKKCMSVYQTYTNAMNSKIQKAITTRNPFQFRHIS 307
Query: 322 PLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
L ++ F D+GPSVV+ASPG +QSGLSR+LF+ WC++K+N ++ GY VEGTLA I
Sbjct: 308 NLKGMEAFDDDIGPSVVLASPGMMQSGLSRELFEKWCTNKRNGVILAGYAVEGTLAHQIK 367
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
+EP E+ M+G PL MQV Y+SFSAHADY Q S F++E+ PP+I+LVHGE++EMGRLK
Sbjct: 368 TEPDEIVTMSGQKLPLKMQVEYMSFSAHADYRQISEFVREIKPPHIVLVHGEANEMGRLK 427
Query: 441 TKLMTEL---ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
+L E A+ + I P+N + V+ +F EK AK +G LA P+ + + GILV+K
Sbjct: 428 RQLDIEYEHDAETDITIHMPRNAEKVKFHFRGEKNAKVVGSLAHYLPKQEDEIEGILVRK 487
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQRIT 525
F Y+I+A +DL ++L T + QR++
Sbjct: 488 NFNYKIVAAEDLKTHAELETTQVKQRLS 515
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 287/508 (56%), Positives = 359/508 (70%), Gaps = 52/508 (10%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
ILVHGE +EM
Sbjct: 366 -------------------------------------------------ILVHGEQNEMA 376
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 377 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 436
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 437 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 464
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 276/453 (60%), Positives = 348/453 (76%), Gaps = 3/453 (0%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
ID+LL++HFH H +LP+FL KTTFKGR FMTHATKAIY+ LL DY+KVS + E ML+
Sbjct: 1 IDLLLVSHFHWYHCGALPWFLLKTTFKGRCFMTHATKAIYRWLLADYIKVSNIGTEQMLY 60
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ SM+KIE ++FH+ EVNGI+FWCY AGHVLGAAMFM++IAGV+VLYTGD+SR+
Sbjct: 61 TEADLEASMEKIETINFHEEKEVNGIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQ 120
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
EDRHL AAE+P PD+ IIESTYG +H+ R RE RFT ++H +++GGR LIP FAL
Sbjct: 121 EDRHLMAAEIPNIHPDVLIIESTYGTHIHEKREEREARFTGLVHDIVNRGGRCLIPVFAL 180
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQELLLILDEYWSNHPE H+IPIYYAS LAKKCMAVYQTY+ +MNERIR Q +NPF
Sbjct: 181 GRAQELLLILDEYWSNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNERIRRQITINNPF 240
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHIS L SI+ F D+GP VVMASPG +QSGLSR+LF+ WC+D KN +I GY VEGTL
Sbjct: 241 VFKHISNLKSIEHFEDIGPCVVMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTL 300
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
AKTI+SEP+E++ M G PL M V YISFSAH DY QTS F++ L PP+I+LVHGE +E
Sbjct: 301 AKTILSEPEEISTMVGQKLPLKMSVDYISFSAHTDYQQTSEFIRTLKPPHIVLVHGEQNE 360
Query: 436 MGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
MGRLK ++ E D ++ P+N Q+VE++F EK K +G LA + PE G +SG
Sbjct: 361 MGRLKAAIVREYEDDLETRIEVHNPRNTQAVELHFRGEKTTKVMGSLAVEPPEPGRQLSG 420
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+LVK+ F+Y ++AP DL ++ + + + QR++
Sbjct: 421 VLVKRNFSYHLLAPGDLGKYTDMVMSTVGQRMS 453
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 278/509 (54%), Positives = 368/509 (72%), Gaps = 7/509 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQL I LGAG EVGRSC + YKGKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F+ G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++ S +IE +DFHQ V + G++F Y AGHVLGA MF+++IAG+R+LYTGD+SREED
Sbjct: 142 EMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREED 201
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AE+P PD+ I ESTYG Q H+PR +E RFT IH I +GGRVL+P F LGR
Sbjct: 202 RHLVQAEIPPVRPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGR 261
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK 316
AQELLL+LDEYW+ HPE H++PIYYAS LAKKC++VYQTYI +MN+ IR +F NPF
Sbjct: 262 AQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFV 321
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHIS L S++ F D GP V+MASPG +QSG+SR+L + W DK+N ++ GY VEGT+A
Sbjct: 322 FKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMA 381
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ I++EP E+ MNG+ P M V YISFSAH D+AQ S F+ E+ +I+LVHGE + M
Sbjct: 382 RNILNEPDEIIGMNGIKIPRRMSVDYISFSAHVDFAQNSRFIDEIKAQHIVLVHGEQNNM 441
Query: 437 GRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
+L+ L + KI TP+NC+ + + F +++ AK IG +A K P G+TV G+L
Sbjct: 442 SKLRAALQARFTARGSDVKIHTPRNCEPLTLQFRAQRTAKAIGTIAAKLPAQGDTVDGLL 501
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ K F Y I+ P DL F+ LST+ I QR
Sbjct: 502 ISKDFAYTILDPKDLTDFTGLSTSTIVQR 530
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 277/509 (54%), Positives = 366/509 (71%), Gaps = 7/509 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQL I LGAG EVGRSC + YKGKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F+ G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++ S +IE +DFHQ V + G++F Y AGHVLGA MF+++IAG+R+LYTGD+SREED
Sbjct: 142 EMFASWRQIEAVDFHQDVSIAGGLRFTAYHAGHVLGACMFLIEIAGLRILYTGDFSREED 201
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AE+P PD+ I ESTYG Q H+PR +E RFT IH I +GGRVL+P F LGR
Sbjct: 202 RHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGR 261
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK 316
AQELLL+LDEYW+ HPE H++PIYYAS LAKKC++VYQTYI +MN+ IR +F NPF
Sbjct: 262 AQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFV 321
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHIS L S++ F D GP V+MASPG +QSG+SR+L + W DK+N ++ GY VEGT+A
Sbjct: 322 FKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMA 381
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ I++EP E+ MNG P M V YISFSAH D+AQ S F+ E+ +I+LVHGE + M
Sbjct: 382 RNILNEPDEIIGMNGQKIPRRMSVDYISFSAHVDFAQNSRFIDEIKAQHIVLVHGEQNNM 441
Query: 437 GRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
+L+ L + KI TP+NC+ + + F +++ AK IG +A K P G+ V G+L
Sbjct: 442 SKLRAALQARFTARGSDVKIHTPRNCEPLVLQFRAQRTAKAIGTIAAKPPAQGDLVDGLL 501
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ K F Y I+ P DL F+ LST+ I QR
Sbjct: 502 ISKDFAYTILDPKDLTDFTGLSTSTIIQR 530
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 276/512 (53%), Positives = 371/512 (72%), Gaps = 3/512 (0%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAPV D L LGAGNEVGRSC + YKGKT++ D G+HPAY+G++ALP+FDE D
Sbjct: 10 DAPVD-PSDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDL 68
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S +DVLLI+HFHLDH ASLPY ++KT F+GRVFMTH TKA+ K LL+DYVKVS V +ED
Sbjct: 69 STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQ 128
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L+DE+D+ + D+IE +D+H T+EV GIKF Y AGHVLGA M+ V++AGV +L+TGDYS
Sbjct: 129 LYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYS 188
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
REEDRHL AE+P PD+ I ESTYG HQPR +E R ++IHSTI GGRVL+P F
Sbjct: 189 REEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVF 248
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQELLLILDEYW+NH + ++PIYYAS LA+KCMA++QTY+ MN+ IR FA N
Sbjct: 249 ALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERN 308
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF F+ + L +++ F D+GPSV++ASPG LQ+G+SR L + W D +N ++ GY VEG
Sbjct: 309 PFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEG 368
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+AK I +EP E+ ++G P M V +SF+AH DY Q S F+ + +IILVHGE
Sbjct: 369 TMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQ 428
Query: 434 HEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
MGRLK+ L ++ + + K+ TP+NC + + F E++ + +G++A P+ G+ +S
Sbjct: 429 TNMGRLKSALASKFHNRKVDVKVYTPRNCVPLYLPFKGERLVRALGKVAVHKPKEGDIMS 488
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
GIL++K Y++M+ +DL FS L+T +TQ+
Sbjct: 489 GILIQKDANYKLMSAEDLRDFSDLTTTVLTQK 520
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 275/509 (54%), Positives = 366/509 (71%), Gaps = 7/509 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQL I LGAG EVGRSC + Y+GKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F+ G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++ S +IE +DFHQ V + G++F Y AGHVLGA MF+++IAG+R+LYTGD+SREED
Sbjct: 142 EMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREED 201
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AE+P PD+ I ESTYG Q H+PR +E RFT IH I +GGRVL+P F LGR
Sbjct: 202 RHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGR 261
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK 316
AQELLL+LDEYW+ HPE H++PIYYAS LAKKC++VYQTYI +MN+ IR +F NPF
Sbjct: 262 AQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFV 321
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHIS L S++ F D GP V+MASPG +QSG+SR+L + W DK+N ++ GY VEGT+A
Sbjct: 322 FKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMA 381
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ I++EP E+ +NG P M V YISFSAH D+AQ S F+ E+ +I+LVHGE + M
Sbjct: 382 RNILNEPDEIIGINGQKIPRRMSVDYISFSAHVDFAQNSRFIDEIKAQHIVLVHGEQNNM 441
Query: 437 GRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
+L+ L + KI TP+NC+ + + F +++ AK IG +A K P G+ V G+L
Sbjct: 442 SKLRAALQARFTARGSDVKIHTPRNCEPLVLQFRAQRTAKAIGTIAAKPPAQGDIVDGLL 501
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ K F Y I+ P DL F+ LST+ I QR
Sbjct: 502 ISKDFAYTILDPKDLTDFTGLSTSTIVQR 530
>gi|255084461|ref|XP_002508805.1| predicted protein [Micromonas sp. RCC299]
gi|226524082|gb|ACO70063.1| predicted protein [Micromonas sp. RCC299]
Length = 728
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/510 (53%), Positives = 365/510 (71%), Gaps = 3/510 (0%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
V+ + D L I PLGAG+EVGRSCV SYK KT++FDCG+HP Y+G+A+LPYFDE+D S +
Sbjct: 20 VTNKDDMLEIMPLGAGSEVGRSCVLASYKNKTVMFDCGVHPGYAGIASLPYFDEVDLSTV 79
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDMLF 135
D +LITHFHLDH A++P+ + +T FKGR+ MTH TKAI+ +L+ D+VK++K + LF
Sbjct: 80 DAMLITHFHLDHCAAVPFVVGRTNFKGRILMTHPTKAIFAMLMNDFVKLNKQGDNSEALF 139
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E+D+ M +IEV+DFHQ ++++G+K Y AGHVLGA MF VDI G+RVLYTGDYSR
Sbjct: 140 GEKDVQECMRRIEVIDFHQEMDIDGVKVTPYRAGHVLGACMFYVDIGGLRVLYTGDYSRT 199
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL A+LP P + I+E+TYGV H PR RE+RFTD++H +++GG+VL+P AL
Sbjct: 200 PDRHLPGADLPPIPPHVVIVEATYGVSPHSPREERERRFTDMVHRVLTRGGKVLLPVVAL 259
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQE+LLIL++YW HPE +PIY AS LAK+ M VYQTYI +N ++ F SNPF
Sbjct: 260 GRAQEVLLILEDYWVKHPELKGVPIYQASALAKRAMTVYQTYINVLNSDMKAAFEESNPF 319
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
F H++ L + DVGP VV+A+P LQSGLSR LF+ WC D KN +I + V+GTL
Sbjct: 320 VFNHVNHLANSSGLDDVGPCVVLATPSMLQSGLSRDLFESWCGDSKNGVIICDFAVQGTL 379
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
A+ I+S+ K VT G PL M V ISFSAHADY QT FL L PP+++LVHGE+ E
Sbjct: 380 AREILSDCKTVTSRTGQELPLRMTVDAISFSAHADYPQTQQFLDALAPPHVVLVHGEAGE 439
Query: 436 MGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGI 493
MG+LK L + A K++ PKNCQ+VE+ + K A+ +GRLA P+ G+ VSG+
Sbjct: 440 MGKLKRALEGKAAADGKKMMVYNPKNCQAVEIMHSQSKTARVMGRLALNPPKEGDRVSGL 499
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
LV+K F + I+AP+DLH ++ L TA +TQR
Sbjct: 500 LVQKDFGHMIIAPEDLHEYTSLKTAKLTQR 529
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/504 (54%), Positives = 364/504 (72%), Gaps = 2/504 (0%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L ITPLGAG+EVGRSCV +YKGK+++FDCG+HP Y+G+A+LPYFDE+D S +D LL+
Sbjct: 16 DMLRITPLGAGSEVGRSCVMATYKGKSVMFDCGVHPGYAGIASLPYFDEVDLSTVDALLV 75
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH A++P+ + T FKGR+ MTH TKAI+ +L+TD+VK+ K + + LF EQD+
Sbjct: 76 THFHLDHCAAVPFLVGHTNFKGRILMTHPTKAIFNMLMTDFVKLQKNNDSEALFTEQDLK 135
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
++ IEV+DFHQ + ++G+K Y AGHVLGA MF VDI G+RVLYTGDYSR DRHL
Sbjct: 136 AAIAMIEVVDFHQEIVIDGMKVTPYRAGHVLGACMFFVDIDGLRVLYTGDYSRTPDRHLP 195
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
A+LP P + I ESTYGV H PR REKRFTD ++ +++GG+VL+P ALGRAQEL
Sbjct: 196 GADLPSVPPHVVISESTYGVSPHTPREEREKRFTDRVYQILNRGGKVLLPVVALGRAQEL 255
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+++W HPE N+PIY AS LA++ M VYQTYI +N ++ F +NPF F H+
Sbjct: 256 LLILEDHWKKHPELANVPIYQASALARRAMTVYQTYINVLNSDMKAAFEEANPFVFNHVQ 315
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L+ DVGP VV+A+P LQSGLSR+LF++WC D N +I + V+GTLA+ I+S
Sbjct: 316 HLSHAGGLDDVGPCVVLATPSMLQSGLSRELFEMWCGDANNGVIIADFAVQGTLAREILS 375
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+ K +T NG PL M V ISFSAHADY QT FL L PP+++LVHGE+ EMG+LK
Sbjct: 376 DCKSITSRNGGEIPLKMSVDAISFSAHADYPQTQQFLDALAPPHVVLVHGETGEMGKLKR 435
Query: 442 KLMTE-LADCNT-KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGF 499
L + AD T + +PKNCQSVE+ ++ K+ K +G+LAE P++G+ V G+LVKK F
Sbjct: 436 ALEGKAAADGKTMSVYSPKNCQSVEIKYSGSKIVKVMGKLAENPPKMGDRVRGLLVKKDF 495
Query: 500 TYQIMAPDDLHIFSQLSTANITQR 523
++AP+DL +++L TA + QR
Sbjct: 496 GLMLLAPEDLPNYTKLRTAALKQR 519
>gi|388498176|gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 277/313 (88%), Positives = 295/313 (94%), Gaps = 5/313 (1%)
Query: 9 SLKRRDAPVS---REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
S+KRRD VS RE DQLI+TPLGAGNEVGRSCVYMSYKGKT+LFDCGIHPAYSGMAAL
Sbjct: 3 SVKRRDLSVSGSSREEDQLIVTPLGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAAL 62
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
PYFDEIDPS +DVLLITHFHLDHAASLPYFLEKTTF+GRVFMT+ATKAIYKLLL+D+VKV
Sbjct: 63 PYFDEIDPSTVDVLLITHFHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKV 122
Query: 126 SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 185
SKVSVEDMLFDEQDINRSMDKIEV+DFHQT+EVNGI+FWCYTAGHVLGAAMFMVDIAGVR
Sbjct: 123 SKVSVEDMLFDEQDINRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMVDIAGVR 182
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
VLYTGDYSREEDRHLRAAE PQFSPD+CIIESTYGVQ HQPR+ REKRFTDVIHSTISQG
Sbjct: 183 VLYTGDYSREEDRHLRAAETPQFSPDVCIIESTYGVQHHQPRHTREKRFTDVIHSTISQG 242
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
GRVLIPAFALGRAQELLLILDEYW+NHPE NIPIYYASPLAKKC+ VY+TY LSMN+RI
Sbjct: 243 GRVLIPAFALGRAQELLLILDEYWTNHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI 302
Query: 306 RNQFANSNPFKFK 318
+N A SNPF FK
Sbjct: 303 QN--AKSNPFSFK 313
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 284/530 (53%), Positives = 375/530 (70%), Gaps = 7/530 (1%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA P SL A + DQL I LGAG EVGRSC + YKGKTI+ D G+HPA++
Sbjct: 1 MAPSVVPQSLAAGAALQASTDDQLTIEMLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFT 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKL 117
G+AALP+ DE+D S +D +LITHFHLDHAA+L Y +EKT F+ G+V+MTH TKA+Y+
Sbjct: 61 GIAALPFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRF 120
Query: 118 LLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAM 176
L++D+V++S ED LFDE ++ S +IE +DFHQ V + G++F Y AGHVLGA M
Sbjct: 121 LMSDFVRISNAGNEDHLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTAYHAGHVLGACM 180
Query: 177 FMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTD 236
F+++IAG+R+LYTGD+SREEDRHL AE+P PD+ I ESTYG Q H+PR+ +E RFT
Sbjct: 181 FLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRHDKEHRFTS 240
Query: 237 VIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT 296
IH I +GGRVL+P F LGRAQELLL+LDEYW+ HPE ++PIYYAS LAKKC++VYQT
Sbjct: 241 QIHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELQSVPIYYASALAKKCISVYQT 300
Query: 297 YILSMNERIRNQF-ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
YI +MN+ IR +F NPF FKHIS L S++ F D GP V+MASPG +QSG+SR+L +
Sbjct: 301 YIHTMNDHIRTRFNRRDNPFVFKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLER 360
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
W DK+N ++ GY VEGT+A+ I++EP E+ MNG P M V YISFSAH D+AQ S
Sbjct: 361 WAPDKRNGLIVSGYSVEGTMARNILNEPDEIIGMNGQKIPRRMSVDYISFSAHVDFAQNS 420
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMA 473
F+ E+ +I+LVHGE + M +L+ L + +TKI TP+NC+ + + F +++ A
Sbjct: 421 RFIDEIKAQHIVLVHGEQNNMSKLRAALQAKFTARGSDTKIHTPRNCEPLVLQFRAQRTA 480
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
K IG +A K P G+ V G+L+ K F Y I+ P DL F+ LST+ I QR
Sbjct: 481 KAIGAIAAKPPAQGDVVDGLLISKDFAYTILDPKDLTDFTGLSTSTIVQR 530
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/524 (54%), Positives = 354/524 (67%), Gaps = 21/524 (4%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLG+G EVGRSC ++++ TIL DCGIHP Y GMA LP+FD +DP +DVLLI
Sbjct: 3 DIMTITPLGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDRVDPEQVDVLLI 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV----------SKVSVE 131
THFHLDHAASLPYF E+T FKGR+FMTH TKA+ +LLL DY+K+ K +
Sbjct: 63 THFHLDHAASLPYFTERTGFKGRIFMTHPTKAVIRLLLGDYLKLMMMKKGSGGADKDDNQ 122
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVN---GIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
D+L+ E D+ +DKIE++D+HQT+++N G+KF AGHVLGAAMF +++ G VLY
Sbjct: 123 DVLYTEADLQSCVDKIELIDYHQTIDLNLPSGLKFHALNAGHVLGAAMFFIEVGGRSVLY 182
Query: 189 TGDYSREEDRHLRAAELPQF--SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
TGDYS EEDRHL AAELP++ SPD+ I+ESTYGVQ+H R RE RFT I ++ GG
Sbjct: 183 TGDYSMEEDRHLMAAELPKYHASPDLLIVESTYGVQVHASRAEREARFTGTIERIVTGGG 242
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
R LIP FALGRAQELLLILDEYW HP +IPIYYAS +A + + VYQTY MN RIR
Sbjct: 243 RCLIPVFALGRAQELLLILDEYWQEHPHLQSIPIYYASKMASRALRVYQTYANMMNARIR 302
Query: 307 NQFANSNPFKFKHISPLNSID--DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
Q NPF F HI L SID +F D GPSVV ASPG LQSG+SRQLFD W D KN
Sbjct: 303 AQMDLGNPFHFSHIRNLKSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDRWAGDPKNGV 362
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
++ GY VE TLAK I+S+PKEV + G PLN V Y+SFSAH D+ Q F+ + P
Sbjct: 363 MLAGYAVEHTLAKEIMSQPKEVVTLEGRRQPLNCLVDYVSFSAHVDFVQNRDFITSVNPR 422
Query: 425 NIILVHGESHEMGRLKTKLMTEL----ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
NIILVHG EMGRLK LM + I P N V++ F + AK +G+LA
Sbjct: 423 NIILVHGAKEEMGRLKGALMLHYNKLPENKRPTIAMPPNEVDVKLIFTRRRSAKVMGKLA 482
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
E P G+ V GILV + + +I+AP+DL ++ L +++ R+
Sbjct: 483 EAPPREGDPVRGILVTQQNSSKIVAPEDLSTYTPLRVGSVSSRL 526
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 271/520 (52%), Positives = 371/520 (71%), Gaps = 6/520 (1%)
Query: 8 PSLKRRDAPVSREGDQ-LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
P +R P +GD+ L PLGAGNEVGRSC + +KGKTI+FDCG HP Y G +LP
Sbjct: 9 PGSAKRSFPF--QGDETLEFIPLGAGNEVGRSCCLLKFKGKTIMFDCGAHPGYRGEESLP 66
Query: 67 YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
+FDE+D +ID+LL+THFH+DHAAS+PYFL KTTFKG+V+MT+ T AI KL+ +D++KVS
Sbjct: 67 FFDEVDAESIDLLLVTHFHVDHAASVPYFLTKTTFKGKVYMTYPTLAICKLVWSDFIKVS 126
Query: 127 KVSVE--DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
+S + L+ E+DI +++KI +D+HQ VEV G+KFWCY AGHVLGA MF+V IAGV
Sbjct: 127 GISEQYGGSLYTEKDIQETVNKIICIDYHQEVEVEGVKFWCYNAGHVLGACMFIVQIAGV 186
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
R+LYTGDYSR+EDRHL AAE+P + ++ESTYGVQ H+PR REKRF + + ST+
Sbjct: 187 RLLYTGDYSRQEDRHLMAAEMPSVQVHVLVVESTYGVQTHEPRRSREKRFLEAVVSTLQL 246
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GGRVL+P FA+GRAQELLL+LDEYW +PE H PI S +AK+C+A YQTYI MN R
Sbjct: 247 GGRVLLPVFAIGRAQELLLLLDEYWRKNPELHRYPIICLSGMAKRCIASYQTYINQMNNR 306
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
IR+ NPF+F+HI + ++ +F D P VVMASPG LQ+G SR LFD WC + N+
Sbjct: 307 IRHLNDIENPFEFRHIRYMTTMAEFQDNCPCVVMASPGMLQNGPSRDLFDRWCEYRHNSV 366
Query: 365 VIPGYVVEGTLAKTII-SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
VI GY V+ TLAK ++ ++P TL +G PL ++VHYISFSAHAD+ QTS F+ EL P
Sbjct: 367 VITGYCVQNTLAKELLDAQPATHTLQDGKEVPLKIRVHYISFSAHADFIQTSQFIDELRP 426
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
+I+LVHGE++ M LK +L+++ + +P+N ++V + F+ K+AK +G LA +
Sbjct: 427 SHIVLVHGEANMMASLKKQLVSKYEHMGVGVWSPQNTENVTLTFHESKVAKVVGSLAVER 486
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ G ++ G+++ K F I+ D++ + L +++ QR
Sbjct: 487 PKTGGSLHGVVLHKNFQLTIVGVDEMGAHAGLEVSHLIQR 526
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/519 (52%), Positives = 363/519 (69%), Gaps = 10/519 (1%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
++ + D LG G EVGRSC +S+KGKTI+ D G+HPA+SG+A+LP++DE D S I
Sbjct: 30 LTDDSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTI 89
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLF 135
D+LLI+HFHLDHAASLPY ++KT FKGRVFMTH TK IY+ LL+D+V+V+ + D L+
Sbjct: 90 DILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLY 149
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ S +KIE +D+H T+EVNG+KF Y AGHVLGAAM+ +++ GV+VL+TGDYSRE
Sbjct: 150 SEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSRE 209
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
EDRHL AE+P PDI I ESTYG H PR RE+R T +IHST+ +GG+ L+P FAL
Sbjct: 210 EDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFAL 269
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--SN 313
GRAQE+LLILDEYW HP+ IYYAS LAKKC+AVYQTYI MN+ IR +F + +N
Sbjct: 270 GRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTN 329
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF+FK+I + ++D F D+GP V++ASPG LQSG+SR L + W D KN ++ GY VEG
Sbjct: 330 PFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEG 389
Query: 374 TLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
T+AK II+EP E+ L P + V +SF+AH D+ Q S F+ + NIILVHG
Sbjct: 390 TMAKQIINEPNEIPSAQNPDLKVPRRLAVEELSFAAHVDFQQNSEFIDLVDSKNIILVHG 449
Query: 432 ESHEMGRLKTKLMTELADCNTK-----IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
E + M RLK L+ + I P+NC+ VE+ F K+AKT+G++AE+ P V
Sbjct: 450 ELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEVELAFKGVKVAKTVGKMAEEKPHV 509
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
G+ +SG++V+K F Y +M DL LST+++ +R T
Sbjct: 510 GQIISGVVVQKDFNYGLMGVADLREHVGLSTSSVLERQT 548
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 268/506 (52%), Positives = 358/506 (70%), Gaps = 3/506 (0%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
GD L I PLGAG+EVGRSCV YK KT++FDCGIHP Y+G+A+LPYFDEID + +D L
Sbjct: 9 GDLLEIIPLGAGSEVGRSCVIARYKQKTLMFDCGIHPGYAGLASLPYFDEIDLADVDALF 68
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK-VSVEDMLFDEQD 139
+THFHLDH A++P+ +T F GR+FMTH TKAIY +L+ D+ ++ K + LF E+D
Sbjct: 69 VTHFHLDHCAAVPFLCGRTDFNGRIFMTHPTKAIYHMLMQDFCRLLKNQEPSEQLFGEKD 128
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ SM KIEV+DFHQ V+V+G+K Y AGHVLGA MF VDI G+RVLYTGDYSR DRH
Sbjct: 129 LEASMKKIEVIDFHQEVDVDGVKVTPYRAGHVLGACMFNVDIGGLRVLYTGDYSRIADRH 188
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AA++P P + I+ESTYGV H PR RE RFT+ + + + +GGRVL+P ALGRAQ
Sbjct: 189 LPAADVPAIPPHVVIVESTYGVSPHSPREEREIRFTEKVQTILRRGGRVLLPVVALGRAQ 248
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
ELLLIL+++W+ +P+ +PIY AS LA+K M +YQTYI +N ++ F +NPF F H
Sbjct: 249 ELLLILEDFWAQNPDLQRVPIYQASALARKAMTIYQTYINVLNSDMKAAFEEANPFVFNH 308
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ ++ + DVGP VV+A+P LQSGLSR+LF+ WC D KN +I + V+GTLA+ I
Sbjct: 309 VKHVSKSSELDDVGPCVVLATPSMLQSGLSRELFESWCEDPKNGVIIADFAVQGTLAREI 368
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+S+ ++ +G LNM V ISFSAHADY QT FL L PP++ILVHGE+ EMGRL
Sbjct: 369 LSDVNKIIARDGRELQLNMSVDAISFSAHADYPQTQAFLDALAPPHVILVHGEAGEMGRL 428
Query: 440 KTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
K L + A D + TPKNCQ VE+ E++AK G LAE+ E G+ V+G+LV+K
Sbjct: 429 KRALDNKAAADDKKMSVYTPKNCQPVEIIHKGERIAKITGLLAEQEIEEGDHVAGVLVQK 488
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQR 523
F ++AP+D++ +++L T+ +TQR
Sbjct: 489 DFGTMLIAPEDVNNYTKLRTSLVTQR 514
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 269/505 (53%), Positives = 357/505 (70%), Gaps = 5/505 (0%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L ITPLGAG EVGRSC + +KG TI+ DCGIHP G A+LP+ +I+ + ID++LITH
Sbjct: 51 LTITPLGAGQEVGRSCHILKFKGFTIMLDCGIHPGLKGKASLPFVSQIELNKIDLVLITH 110
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
FHLDH +LP+ LE++TF GRVFMT ATKAIY+ +L DYV+VS +S ++ +D+ S
Sbjct: 111 FHLDHCGALPWLLERSTFSGRVFMTPATKAIYRWILEDYVRVSNISNFAEMYSLEDVENS 170
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
+ KIE + +HQ ++G++F Y AGHVLGA MF ++IAGVR++YTGD+SREEDRHL AA
Sbjct: 171 LAKIETISYHQETNMDGVRFTPYCAGHVLGACMFDIEIAGVRLVYTGDFSREEDRHLMAA 230
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P SPDI I EST+GV+ H+ R RE RFT IH + +GGR LIP FALGRAQELLL
Sbjct: 231 EVPPNSPDILITESTFGVRQHESRQTREHRFTKTIHDVVDRGGRCLIPVFALGRAQELLL 290
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPL 323
ILD+YW NH E H +PIYYAS LA++CMAVY+TY+ M E I+ + +NPF F+H+S +
Sbjct: 291 ILDDYWQNHDELHRVPIYYASALARRCMAVYKTYVNVMKESIQKTISINNPFNFRHVSYI 350
Query: 324 NSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
++ F GP V++ASPG LQSGLSR++F+ W S+K N ++ GYVV GTLAK ++
Sbjct: 351 RNLHQFDGEYGGGPCVMLASPGMLQSGLSREIFERWASNKANCVLLAGYVVNGTLAKDLL 410
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
PK+VT G + YISFSAH DYAQ F++ L P +I+LVHGE HEMGR K
Sbjct: 411 KAPKKVTSEAGHKIDRECDIAYISFSAHVDYAQNRDFIRALDPTHIVLVHGEKHEMGRFK 470
Query: 441 TKLMTEL-ADCNT-KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
++ T+L AD T + P+N ++V +++ EKMAK +G LA+ P G VSGILV K
Sbjct: 471 MQITTDLEADQKTASVFDPRNAETVLLHYRGEKMAKVLGSLAQSGPVQGRRVSGILVAKE 530
Query: 499 FTYQIMAPDDLHIFSQLSTANITQR 523
F Y ++AP +L +++L T I QR
Sbjct: 531 FNYMVVAPTELGEYTELRTTTIRQR 555
>gi|388579831|gb|EIM20151.1| Metallo-hydrolase/oxidoreductase [Wallemia sebi CBS 633.66]
Length = 626
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 280/531 (52%), Positives = 372/531 (70%), Gaps = 14/531 (2%)
Query: 1 MASVGQPPSLKRRDAPVSREGD-QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
+ S QPP ++ GD +L IT LGAG EVGRSC + YKGK I+ D G+HPAY
Sbjct: 13 LISPNQPPQKS------TKVGDSELRITLLGAGQEVGRSCCLIEYKGKRIVCDAGVHPAY 66
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYK 116
+G+AALP+ DE+D S +D LLITHFHLDHAA+L Y +EKT FK G+V+MT TKA+Y+
Sbjct: 67 TGLAALPFIDELDWSTVDALLITHFHLDHAAALTYIMEKTNFKEGKGKVYMTSPTKAVYR 126
Query: 117 LLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQT-VEVNGIKFWCYTAGHVLGAA 175
++ D+V++S S ED LF E ++ S I+V DF+Q V +G++F Y AGHVLGAA
Sbjct: 127 FMMQDFVRISTTSAEDQLFTESEMIASWRSIQVSDFNQEIVPASGVRFTPYPAGHVLGAA 186
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFT 235
MF+++IAG++VLYTGDYSREEDRHL AAE+P+ D+ I+ESTYGVQ + R +EKRFT
Sbjct: 187 MFLIEIAGLKVLYTGDYSREEDRHLHAAEIPKEQTDVLIVESTYGVQTLENRPEKEKRFT 246
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
+++H+ I +GGRVL+P+FALGRAQELLLILDEYW +P+ H+IPIYYAS LA+KCMAVYQ
Sbjct: 247 ELVHNIIRRGGRVLMPSFALGRAQELLLILDEYWQRNPDLHSIPIYYASNLARKCMAVYQ 306
Query: 296 TYILSMNERIRNQF-ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
YI +MN+ I +F + NPF+FK IS L + + D GP V++ASPG LQSG SR+L +
Sbjct: 307 AYIRTMNKNINRRFDSGENPFQFKFISELGDLRKWQDKGPCVMLASPGMLQSGTSRELLE 366
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQT 414
W D KN +I GY VEGT+A +I++EP E+T +NG P + V YISFSAH D+ Q
Sbjct: 367 RWAPDPKNGLIICGYSVEGTMAHSIVNEPDEITGINGNKIPRKLSVDYISFSAHVDFTQN 426
Query: 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKM 472
+ F+ E+ P +++LVHG M RL L + AD + K+ PKN + +++ F E
Sbjct: 427 TQFIDEIKPQHVVLVHGALTNMSRLAAALRSRYADRGLDIKVHMPKNAEPLKLEFKPEMT 486
Query: 473 AKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
AK IG+LAEK P GE V G+LV K FTY ++ DL F+ L+T I Q+
Sbjct: 487 AKAIGKLAEKQPAEGEIVQGLLVNKDFTYTLLDRSDLKDFAGLATNTIIQQ 537
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 265/520 (50%), Positives = 357/520 (68%), Gaps = 5/520 (0%)
Query: 11 KRRDAPVSREGDQ---LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
++R APV+ D L I PLGAG EVGRSC ++YKG TI+ DCG HPA SG+A LPY
Sbjct: 8 QKRAAPVTERDDTEDILSIMPLGAGQEVGRSCHIITYKGFTIMLDCGTHPAKSGLAQLPY 67
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
DE+D S +D +THFH+DH +LP+ L KT FKGRVFMTHATKA+Y+ +LTDYV+++
Sbjct: 68 VDEVDLSQVDFCFVTHFHVDHCGALPWLLSKTPFKGRVFMTHATKAVYQWMLTDYVRINA 127
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
+ ++ LF ++DI +M +IE +DF QTV + G+ F Y+AGHVLGA MF +DIAGV++L
Sbjct: 128 TTDDNQLFSDKDIENTMKRIETVDFEQTVMLRGLSFTPYSAGHVLGACMFEIDIAGVKLL 187
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR+EDRHL AA +P PDI I EST G H+ R RE+RFT +H+ + +GGR
Sbjct: 188 YTGDFSRDEDRHLMAASIPPIKPDILIAESTLGDLEHENRQDRERRFTKEVHTIVQRGGR 247
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
LIP FALGRAQELLLILDEYW HPE HN+PIYYAS LAK+CM V++ ++ MN +I+
Sbjct: 248 CLIPVFALGRAQELLLILDEYWQQHPELHNVPIYYASALAKRCMGVFKAFVNMMNPKIQQ 307
Query: 308 QFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
Q SNPF+F+ I L +D+F D G SVV+A+PG LQ+GLSR+LF+ W ++ N ++
Sbjct: 308 QMKISNPFQFQFIHNLRKLDEFDDHGSSVVLATPGMLQNGLSRELFERWAPNRHNGVILA 367
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
GY VEGTLA ++ +P+++ M G T P N + ISF+AH D Q F+ EL P +++
Sbjct: 368 GYHVEGTLAHELLKQPRQIRSMAGGTVPRNCTIANISFNAHVDSIQNRDFIGELEPQHLV 427
Query: 428 LVHGESHEMGRLKTKLMT--ELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
LVHG+ +M +LK ++ E D + PKN + ++ EK AK +G+LA +
Sbjct: 428 LVHGQESQMRKLKESVLKDFEQRDRLISVYNPKNTEKQLFHYRGEKNAKVLGKLAREFAA 487
Query: 486 VGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+SG+LV K F Y+IM PD+L F+QL A I QR T
Sbjct: 488 GSRRISGVLVSKAFDYKIMHPDELAEFTQLRVARIRQRQT 527
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 268/512 (52%), Positives = 369/512 (72%), Gaps = 12/512 (2%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+L IT LGAG EVGRSC + Y+G+TI+ D G+HPAYSG+A+LP+ DE+D S +DVLLIT
Sbjct: 6 KLSITLLGAGQEVGRSCCVLQYRGRTIVCDAGVHPAYSGIASLPFIDELDWSTVDVLLIT 65
Query: 83 HFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HFHLDHAA+L Y +EKT FK G+V+MTH TKA++K ++ D+V++S S D LF +
Sbjct: 66 HFHLDHAAALTYIMEKTNFKNGKGKVYMTHPTKALHKFMMQDFVRMSSSST-DTLFTPLE 124
Query: 140 INRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
++ S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREEDR
Sbjct: 125 MSMSLASITTVSAHQVINPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AE+P PD+ I+ESTYGVQ H+PR +E RFT+++HS I +GG VL+P FALGRA
Sbjct: 185 HLVKAEIPPVHPDVLIVESTYGVQSHEPREDKETRFTNLVHSIIRRGGHVLLPTFALGRA 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKF 317
QELLLILDEYW+ HP+ HN+P+YYAS LA+KCMAVYQTYI +MN +R +FA + NPF F
Sbjct: 245 QELLLILDEYWAKHPDLHNVPVYYASSLARKCMAVYQTYIHTMNANVRTRFAKHDNPFVF 304
Query: 318 KHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
KHI+ + + ++ P VV+ASPG +Q+G SR+L ++W D +N ++ GY +EG
Sbjct: 305 KHITNVPGTRGWERKIAEGPPCVVLASPGFMQTGPSRELLELWAPDGRNGLIVTGYSIEG 364
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+A+ I++EP+E+T M G T P + V Y+SFSAH DY+Q S F++ + P +I+LVHGE+
Sbjct: 365 TMAREILTEPEEITTMKGNTIPRKISVDYMSFSAHVDYSQNSEFMELVKPQHIVLVHGEA 424
Query: 434 HEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
MGRLK + D KI TP+N ++E+ F SE++AK IG LA K P+ + +S
Sbjct: 425 TGMGRLKAAMQDRYKSRDEEIKIHTPRNLDTLELTFRSERVAKAIGTLANKPPQPNDIIS 484
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+LV K ++Y ++ P DL F+ L+T +TQR
Sbjct: 485 GLLVSKDYSYTLLDPRDLRDFAGLTTCVVTQR 516
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 258/475 (54%), Positives = 347/475 (73%), Gaps = 2/475 (0%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHA 110
D GIHPAYSG AALP+FDE D S +D+LLITHFHLDHAA+LPY ++KT F+GRVFMTH
Sbjct: 17 LDAGIHPAYSGFAALPFFDEFDLSTVDILLITHFHLDHAAALPYVMQKTNFRGRVFMTHP 76
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGH 170
TKA+ K LL+DYV+VS V VED L+DE+D+ + +++E +D+H T+EV G+KF + AGH
Sbjct: 77 TKAVCKWLLSDYVRVSNVGVEDQLYDEKDLAAAFERMEAVDYHSTIEVEGVKFTPFHAGH 136
Query: 171 VLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR 230
VLGA M+ ++IAGV++LYTGD+SREEDRHL AE+P P+I I ESTYG HQPR +
Sbjct: 137 VLGACMYFIEIAGVKLLYTGDFSREEDRHLNIAEVPPQKPNILISESTYGTASHQPRLDK 196
Query: 231 EKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKC 290
E R +++H+T+ GGRVL+P FALGRAQELLLILDEYW +H E ++PIYYAS LA+KC
Sbjct: 197 EARLLNLVHTTVRNGGRVLMPVFALGRAQELLLILDEYWHSHAELRSVPIYYASSLARKC 256
Query: 291 MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MAVYQTYI MN++IR FA NPF F++I L SID F D+GPSV++ASPG LQ+G+SR
Sbjct: 257 MAVYQTYINMMNDKIRKAFAERNPFIFRYIKSLRSIDKFDDIGPSVILASPGMLQNGVSR 316
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
L + W D +N ++ GY VEGT+AK I +EP E+T ++G P M V +SF+AH D
Sbjct: 317 TLLERWAPDARNTLLLTGYSVEGTMAKLIANEPIEITTLSGQKIPRRMTVEELSFAAHVD 376
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFN 468
Y Q S F+ + P +IILVHGE GRLK+ LM++ + + K+ PKNC +E++F
Sbjct: 377 YIQNSEFIDAVNPDHIILVHGEQTNTGRLKSALMSKYHNKKMDVKVYNPKNCVPLELHFK 436
Query: 469 SEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+++ K +G +A K + + VSGILV+K +++M ++L FS L+T + Q+
Sbjct: 437 GDRIVKALGNIAIKKAKENDIVSGILVQKDSIFKLMVAENLRDFSDLTTTVVMQK 491
>gi|384252038|gb|EIE25515.1| Metallo-hydrolase/oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 696
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 262/512 (51%), Positives = 359/512 (70%), Gaps = 5/512 (0%)
Query: 17 VSREGDQLI--ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
V R D L+ I PLGAG EVGRSCV + Y GKT++FDCG+HP +SG +LPYFD ID
Sbjct: 2 VKRGADTLVAKIIPLGAGQEVGRSCVILKYMGKTVMFDCGVHPGFSGEQSLPYFDSIDLD 61
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
++D++L+THFHLDH A++PY + KT FKGR+FMTH TKAI+ +LL D VKVS+ + + L
Sbjct: 62 SVDLMLVTHFHLDHCAAVPYVVGKTVFKGRIFMTHPTKAIFGMLLKDSVKVSRGATDAGL 121
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ E+D+ ++++ E+LDFHQT++V+GIK + AGHVLGAAMFMV+IAG+R LYTGDYSR
Sbjct: 122 YSEKDVEAALERTELLDFHQTIDVDGIKVTAWRAGHVLGAAMFMVEIAGMRALYTGDYSR 181
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRH+ AA+LP P I I+E+TYGV H PR RE+RF ++I + + +GGR L+P A
Sbjct: 182 LADRHMSAADLPSPPPHIVIVEATYGVSRHLPREGREQRFVNMIRAVVQRGGRCLLPVVA 241
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-N 313
LGRAQEL+LIL++YW + + +PIY AS LA++ + ++QTYI MN+ I+ F S N
Sbjct: 242 LGRAQELMLILEDYWDRNADLRGVPIYQASGLARRALGIFQTYIAMMNDDIKAAFGQSAN 301
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF FK+I+ L + DVGP VV+A+P LQSGLSR+LFD WC DK+N +I + V+G
Sbjct: 302 PFNFKYITELKTQGGLDDVGPCVVLATPSMLQSGLSRELFDAWCEDKRNGVIIADFAVQG 361
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
TLA+ I++ P V G PL M V +ISFSAHAD+ QTS F++ L PP++ILVHGE+
Sbjct: 362 TLARDILASPSHVLTKAGAKVPLRMSVEHISFSAHADFDQTSQFVELLDPPHVILVHGEA 421
Query: 434 HEMGRLKTKLMTELADCNTK--IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
EMGRL+ L + + + TPK CQ V + + AK +G LA+K + G+ ++
Sbjct: 422 VEMGRLRKALEQQAVALGQRRLLYTPKVCQPVHIRHRPQLKAKVVGSLADKNAQPGKPLA 481
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+LV++G +MAP DL F++L I QR
Sbjct: 482 GLLVQQGQNCMLMAPQDLPTFTKLHPGRIIQR 513
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 278/514 (54%), Positives = 353/514 (68%), Gaps = 11/514 (2%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLG+G EVGRSC + ++G TIL DCGIHP Y G+ LPY D I+P +DVLLI
Sbjct: 3 DIMSITPLGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEPDQVDVLLI 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV---KVSKVSVEDMLFDEQ 138
THFHLDH ASLPY E+T+FKGR+FMTH TKA+ +LLL DY+ ++ ED+L+ E
Sbjct: 63 THFHLDHVASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYLRLLQMKNAKPEDVLYTEA 122
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D+ +DKIE++DFH TV V G+ F+ AGHVLGA MF + + G ++LYTGDYS E+DR
Sbjct: 123 DLQSCIDKIELMDFHTTVTVGGLSFYALNAGHVLGACMFFLSLGGRKILYTGDYSMEDDR 182
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P SPD+ I+E+TYGVQ+H R RE RFT I IS+GGR LIP FALGRA
Sbjct: 183 HLMAAEIPAESPDVLIVEATYGVQVHASRAEREARFTGTIERVISRGGRCLIPVFALGRA 242
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QELLLILDEYW +P NIPI+YAS LA + + VYQTY MN RIR+Q SNPF+F+
Sbjct: 243 QELLLILDEYWQANPHLQNIPIWYASKLASRALRVYQTYANMMNARIRSQMDVSNPFRFR 302
Query: 319 HISPLNSID--DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
I L SID F D GPSVV ASPG LQSG+SRQLFD W SD KN +I GY VE TLA
Sbjct: 303 FIQNLKSIDVNSFDDSGPSVVFASPGMLQSGVSRQLFDRWASDHKNGVLIAGYAVEHTLA 362
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
K I+++PKEV + G PLN V Y+SFSAH D+ Q +F+ ++ P +IILVHG+ EM
Sbjct: 363 KEIMAQPKEVVTLEGRRQPLNALVDYVSFSAHVDFVQNRSFINQVAPKHIILVHGQKDEM 422
Query: 437 GRLKTKLMTELA----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA--EKTPEVGETV 490
GRLK+ L+ + + I P N Q V++ F + AK +G LA +K P+ GE V
Sbjct: 423 GRLKSALLLQYKQFPENKRPTITMPPNLQEVKLKFARRRSAKVMGSLADRQKEPKEGEEV 482
Query: 491 SGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
GILV F +++AP+DL ++ L +I ++
Sbjct: 483 RGILVTHNFHSKLVAPEDLATYTPLRVGSIASKL 516
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 270/512 (52%), Positives = 367/512 (71%), Gaps = 12/512 (2%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+L IT LGAG EVGRSC + Y+G+TI+ D G+HPAYSG+A+LP+ D++D S +DVLLIT
Sbjct: 6 KLRITLLGAGQEVGRSCCVIQYRGRTIVCDAGVHPAYSGIASLPFIDDLDWSTVDVLLIT 65
Query: 83 HFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HFHLDHAA+L Y +EKT F KG+V+MTH TKA++K ++ D+V++S S D LF +
Sbjct: 66 HFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSTSSA-DTLFTPLE 124
Query: 140 INRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
++ S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREEDR
Sbjct: 125 MSMSLASIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AE+P PD+ I+ESTYGVQ H+PR+ +E RFT+++HS I +GG VL+P FALGRA
Sbjct: 185 HLVKAEIPPIHPDVLIVESTYGVQSHEPRDDKEARFTNLVHSIIRRGGHVLLPTFALGRA 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKF 317
QELLLILDEYW+ HP+ HN+PIYYAS LA+KCMAVYQTYI +MN +R +FA NPF F
Sbjct: 245 QELLLILDEYWAKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNSNVRTRFAKRDNPFVF 304
Query: 318 KHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
KHI+ + + ++ P VV+ASPG + SG SR+L ++W SD KN C++ GY VEG
Sbjct: 305 KHITNVPGTRGWERKIAEGPPCVVLASPGFMNSGPSRELLELWASDSKNGCIVTGYSVEG 364
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+A+ I++EP E+ M G T + V YISFSAH DY+Q S F++ + P +I+LVHGE+
Sbjct: 365 TMARDILNEPSEIVGMKGNTIQRKLSVDYISFSAHVDYSQNSEFMELVKPQHIVLVHGEA 424
Query: 434 HEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
MGRLK + D KI TP+N +++E+ F SE++AK IG LA P+ + +S
Sbjct: 425 TGMGRLKAAMQDRYKSRDEEIKIHTPRNLETLELTFRSERVAKAIGTLAAHPPQPNDVIS 484
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+LV K ++Y ++ P DL F+ L+T +TQR
Sbjct: 485 GLLVSKDYSYTLLDPRDLRDFAGLTTCVVTQR 516
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 260/510 (50%), Positives = 366/510 (71%), Gaps = 15/510 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGK ++ D G+HPA+SG +LP++D+ D S +DVLLI+HFHLDH
Sbjct: 10 LGGGNEVGRSCHIVEYKGKVVMLDAGVHPAFSGAESLPFYDDFDLSKVDVLLISHFHLDH 69
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED------MLFDEQDINR 142
AASLPY ++ T FKGRVFMT+ TKAIYK LL D+V+V+ ++ ++ L+ ++D+N
Sbjct: 70 AASLPYVMQHTNFKGRVFMTYPTKAIYKWLLNDFVRVTSIADDNDENSANFLYTDEDLNE 129
Query: 143 SMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
S+D+IE +D+H T+EV GI+F Y AGHVLGAAMF V++ G++ L+TGDYSREEDRHL +
Sbjct: 130 SLDRIETIDYHSTIEVEGIRFTAYHAGHVLGAAMFFVELGGLKFLFTGDYSREEDRHLSS 189
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
AELP PD+ I EST+G H PR RE + T VIHSTI QGGR L+P FALGRAQE+L
Sbjct: 190 AELPPSRPDLLITESTFGTATHVPRVEREAKLTHVIHSTIQQGGRCLLPVFALGRAQEIL 249
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHI 320
LILDEYW N+PE N+PIYYAS LAKKCMAVYQ Y+ MN+ IR +F N NPF FK+I
Sbjct: 250 LILDEYWQNNPELQNVPIYYASDLAKKCMAVYQRYVNMMNDSIRKKFTETNQNPFHFKYI 309
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ +I+ +D+ SV++ASPG LQ+G+SR++ + W D +N+C++ GY VEGT+AK ++
Sbjct: 310 KNITNIEKINDLDSSVLIASPGMLQNGISRKILEKWSPDPRNSCILTGYSVEGTMAKILL 369
Query: 381 SEPKEV-TLMN-GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+EP E+ +++N + P + + ISF+AH DY Q S F++ + P IILVHGE+++MGR
Sbjct: 370 TEPSEIPSIINPDVMIPRKINIEEISFAAHVDYEQNSKFIELVNPKAIILVHGETNQMGR 429
Query: 439 LKTKLMTEL-----ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGI 493
LK+ L+++ + K+ P+N + + F K+AK +G+LA P+ +T++G+
Sbjct: 430 LKSALLSKYQKFKGTENEIKVYNPRNSSKLSLSFEGIKVAKVMGQLATSLPKEHDTINGV 489
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
LV+K F ++ +DL F+ L+T + QR
Sbjct: 490 LVQKNFDLSLLKIEDLREFAGLTTTVVRQR 519
>gi|403373777|gb|EJY86813.1| Cleavage and polyadenylation specificity factor subunit 3
[Oxytricha trifallax]
Length = 755
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 258/469 (55%), Positives = 345/469 (73%), Gaps = 7/469 (1%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
++ GD L ITPLGAG EVGRSC+Y+ KGK I+ DCGIHP G+ ALPYFD I+P +D
Sbjct: 21 TQSGDFLEITPLGAGCEVGRSCIYLECKGKKIMLDCGIHPGKDGVQALPYFDVINPKELD 80
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++LITHFH+DH A LPYFLEKT FKG+V+MTH TK+IY ++ D+VKVS +++++ LFDE
Sbjct: 81 LILITHFHVDHCAGLPYFLEKTDFKGKVYMTHPTKSIYNYVMQDFVKVSNIAIDEKLFDE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ ++DKI +LD+HQ VE NGIKF CY AGHVLGA+MF+++I GV++LYTGDYSREED
Sbjct: 141 NDLKNTLDKIYMLDYHQEVEENGIKFSCYRAGHVLGASMFLIEIDGVKILYTGDYSREED 200
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL+ AELP D+ I+ESTYGVQ+H+ R+ RE+RFT ++H + +GG+ L+P FALGR
Sbjct: 201 RHLKPAELPNCEVDVLIVESTYGVQIHEQRDKREERFTKLVHDIVKRGGKCLLPVFALGR 260
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK 316
AQE+LLIL+EYW +P+ N+PIYY+ LA+K + V+QTY M +++R + + +NPF
Sbjct: 261 AQEILLILNEYWQKNPDIQNVPIYYSGSLAQKSLTVFQTYRNMMGDQLRMELESGNNPFH 320
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
F+ I+ N +F P V+MASPG LQ+G SR LF W D KN V GY VEGTLA
Sbjct: 321 FEPITTFNDESEF----PLVIMASPGMLQNGQSRDLFVKWAPDPKNGIVFTGYSVEGTLA 376
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
K++++ PK +T+ L + V YISFSAHADY TS ++K+L PPNI+LVHG+++EM
Sbjct: 377 KSVMNRPKILTVAEQ-QVELKLSVEYISFSAHADYQHTSEYIKQLQPPNIVLVHGDANEM 435
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
+L+ L D KI+TPKNCQ V + S+K AK IG+LA +T E
Sbjct: 436 KKLQNDLQARYKD-KIKILTPKNCQQVRLKLISKKSAKIIGQLARQTVE 483
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 267/526 (50%), Positives = 369/526 (70%), Gaps = 19/526 (3%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
VS +++ IT LGAG EVGRSC + YK T++ D GIHPA+SGMAALP+ DEID S++
Sbjct: 25 VSGLDEEMKITMLGAGQEVGRSCCVIEYKSTTVVCDTGIHPAFSGMAALPFIDEIDWSSV 84
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
D +LITHFHLDHAASL Y +E T FK G+VFMTH TKA+Y+ L+ D+V++S + +
Sbjct: 85 DAILITHFHLDHAASLTYIMENTNFKEGHGKVFMTHPTKAVYRFLMQDFVRMSTIGTDSE 144
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
LF+E+ + S D I +D+HQ + + ++F Y AGHVLGAAMF+++I+G+RVLYTGDYS
Sbjct: 145 LFNEEQMIASYDSINAIDYHQEISLGCLRFTSYPAGHVLGAAMFLIEISGIRVLYTGDYS 204
Query: 194 REEDRHLRAAELPQFS--PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
EEDRHL A +P ++ PD+ I ESTYGVQ +PR +E+RFT ++ S + +GGRVL+P
Sbjct: 205 TEEDRHLIPARVPNWNEKPDVMICESTYGVQSLEPRFEKEERFTTLVQSILKRGGRVLMP 264
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
FALGRAQELLLILDEYW+NHPE + IPIYY S LA KCM VYQT+I MN++I+ +F
Sbjct: 265 VFALGRAQELLLILDEYWANHPELNQIPIYYISNLAAKCMKVYQTFIHGMNDQIKRKFNQ 324
Query: 312 S-NP----------FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
NP FK +++ L +ID F D GP VVMASPG +QSG+SR+L + W D+
Sbjct: 325 GINPWTFYREGKGVFKKGYVTNLKAIDKFDDRGPCVVMASPGFMQSGVSRELLERWAPDR 384
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
+NA ++ GY +EGT+A+ ++ EP E+ M G P + VHYISFSAH DY Q + F+ +
Sbjct: 385 RNALLVTGYSIEGTMAREMLKEPNEIIGMKGNKIPRRLDVHYISFSAHVDYTQNAAFIDQ 444
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTE--LADCNTKIITPKNCQSVEMYFNSEKMAKTIGR 478
+MP +++LVHGE + M RLK L + L + +I TP+N +++ + F + ++A+ IG
Sbjct: 445 IMPTHLVLVHGELNNMTRLKNALKDKYTLKKSDIQIHTPRNVETLRLTFQASRIARAIGS 504
Query: 479 LAEKT-PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
LAE T P G ++SGILV K Y +++P DL ++ LST+ I Q+
Sbjct: 505 LAEDTAPLAGSSLSGILVSKDAAYTLLSPADLREYTGLSTSTILQK 550
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 264/519 (50%), Positives = 350/519 (67%), Gaps = 17/519 (3%)
Query: 8 PSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
P ++ DA + + + I PLGAG EVGRSC+ + Y GKT++ DCG+HP + G+A+LP+
Sbjct: 9 PQKRKSDADGTPDDSVVQILPLGAGQEVGRSCIIVRYCGKTVMLDCGVHPGFFGIASLPF 68
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
FDE+D S +D +L+THFHLDH A++PY T+F+GRV MTH TKAI LL D+VKVSK
Sbjct: 69 FDEVDLSEVDAMLVTHFHLDHCAAVPYVTGHTSFRGRVLMTHPTKAIVHTLLKDFVKVSK 128
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
+ L+ E+D++ +M++ EV+DFHQTV+++GI+ Y AGHVLGAAMFMV++ G+R+L
Sbjct: 129 GGSGEGLYSERDLDAAMERTEVIDFHQTVDLDGIRVTAYRAGHVLGAAMFMVEVGGMRLL 188
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGDYSR DRH+ AA+LP P I ++ESTYGV H PR RE+RF IH+ +++GGR
Sbjct: 189 YTGDYSRIPDRHMPAADLPAQRPHIVVVESTYGVSRHLPREEREQRFVQRIHTAVARGGR 248
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
VL+P ALGRAQELLLIL+EYW HPE H +PIY AS LA++ ++VY+ YI MNE I+
Sbjct: 249 VLLPVVALGRAQELLLILEEYWERHPELHGVPIYQASGLARRAISVYKAYIEMMNEDIKR 308
Query: 308 QFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
F +NPF+FKHIS L S F D SG+SR+LF+ WC D +N VI
Sbjct: 309 AFTVANPFEFKHISHLKSAAHFDD--------------SGMSRELFEAWCEDARNCVVIA 354
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
+ V+GTLA+ I+ P EV NG+ PL MQV ISFSAHAD+ QTS FL L PP+++
Sbjct: 355 DFAVQGTLARDILGNPSEVMTRNGVKVPLRMQVDAISFSAHADFPQTSEFLDALQPPHVV 414
Query: 428 LVHGESHEMGRLKTKLMTELADCN--TKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
LVHGE+ EMGRLK L A N + PK Q V + +E+ AK +GRL EK P
Sbjct: 415 LVHGEATEMGRLKKALEQHAAALNIPRALYMPKVTQPVLIEHRTERTAKAVGRLGEKAPA 474
Query: 486 VGETVSGILVK-KGFTYQIMAPDDLHIFSQLSTANITQR 523
G V G+LV+ +G +M DDL F++L + QR
Sbjct: 475 QGAAVRGLLVQSRGGARTLMHHDDLPRFTKLHPGRVVQR 513
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/521 (52%), Positives = 364/521 (69%), Gaps = 18/521 (3%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAP L IT LGAG EVGRSC + Y+GKTI+ D G+HPAY+G+A+LP+ DE+D
Sbjct: 3 DAPT------LSITLLGAGQEVGRSCCVIQYRGKTIVCDAGVHPAYNGIASLPFIDELDW 56
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +DVLLITHFHLDHAA+L Y EKT F KG+V+MTH TKA++K ++ D+V++S S
Sbjct: 57 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSS-ST 115
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
D LF D++ SM I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYT
Sbjct: 116 SDALFSPLDLSMSMSAIIPVSAHQVITPCPGVSFTPYHAGHVLGACMFLIDIAGLKILYT 175
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYSREEDRHL AE+P PD+ I+ESTYGVQ + R +E+RFT ++H+ I +GG VL
Sbjct: 176 GDYSREEDRHLVKAEVPPIRPDVLIVESTYGVQTLEGREEKEQRFTTLVHNIIRRGGHVL 235
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLILDEYW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN +R +F
Sbjct: 236 LPTFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANVRTRF 295
Query: 310 AN-SNPFKFKHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
A NPF FKHIS + + ++ P VV+ASPG + SG SR+L ++W D +N
Sbjct: 296 AKRDNPFVFKHISNVPQARGWERKIAEGPPCVVLASPGFVTSGPSRELLELWAPDSRNGI 355
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
++ GY VEGT+A+ I++EP+E+T + G T P + V YISFSAH DY+Q S F++ +
Sbjct: 356 IVTGYSVEGTMARDILNEPEEITSVKGQTIPRKLSVDYISFSAHVDYSQNSEFIELVNAQ 415
Query: 425 NIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+I+LVHGE MGRL+ + D + KI TP+N +++E+ F E++AK IG LA K
Sbjct: 416 HIVLVHGEQTAMGRLRAAMQDRYKNRDQDVKIHTPRNLETLELTFRGERVAKAIGTLAAK 475
Query: 483 TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ + +SG+LV K ++Y ++ P DL F+ LST +TQR
Sbjct: 476 PPQPNDVLSGLLVAKDYSYTLLDPRDLRDFAGLSTCVVTQR 516
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/511 (52%), Positives = 360/511 (70%), Gaps = 12/511 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L +T LGAG EVGRSC + Y+GKT++ D G+HPAYSGMA+LP+ D++D S +D +L+TH
Sbjct: 7 LKVTMLGAGQEVGRSCCVLQYRGKTVVCDTGVHPAYSGMASLPFIDDLDWSTVDAILVTH 66
Query: 84 FHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F KG+V+MTH TKA++K ++ D+ ++S S D LF D+
Sbjct: 67 FHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDFARMSS-STSDALFSPLDM 125
Query: 141 NRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
S+ I + HQ + V G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREEDRH
Sbjct: 126 QMSLASIIPVSAHQLINVCPGVSFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AELP PD+ I+ESTYGV + R +E RFT ++HS I +GG VL+PAFALGRAQ
Sbjct: 186 LVKAELPPIRPDVLIVESTYGVHTLEGREEKEARFTTLVHSIIRRGGHVLLPAFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFK 318
ELLLILDEYW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN IR +FA NPF FK
Sbjct: 246 ELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANIRTRFAKRDNPFVFK 305
Query: 319 HISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+IS L + ++ P VV+ASPG +Q G SR+LF++W D +N +I GY +EGT
Sbjct: 306 YISNLPQTRGWEKKIAEGPPCVVLASPGFMQVGPSRELFELWAPDARNGLIITGYSIEGT 365
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LA+ I++EP++ + G T P + V YISFSAH DYAQ S F++ + +++LVHGE +
Sbjct: 366 LARDIMTEPEDFIGLKGNTIPRKISVDYISFSAHVDYAQNSEFIQAVKAQHVVLVHGEQN 425
Query: 435 EMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
MGRL+ + + D + KI TP+N +++E+ F E++AK IG LA+K P+ + +SG
Sbjct: 426 TMGRLRAAMAAKFKERDEDVKIHTPRNLETLELSFRGERVAKAIGTLADKPPQANDVLSG 485
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LV K ++Y ++ P DL F+ LST +TQR
Sbjct: 486 LLVAKDYSYTLLDPRDLKDFTGLSTCVVTQR 516
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/517 (51%), Positives = 362/517 (70%), Gaps = 21/517 (4%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAP L +T LGAG EVGRSC + Y+G+TI+ D G+HPAY+G+A+LP+ DE+D
Sbjct: 3 DAPT------LSVTMLGAGQEVGRSCCVLQYRGRTIVCDTGVHPAYNGIASLPFIDELDW 56
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +D +LITHFHLDHAA+L Y EKT F KG+V+MTH TKA++K ++ DYV++ S
Sbjct: 57 STVDAILITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMGS-ST 115
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
D LF D+ S+ I + HQ + + G+ F Y AGHVLGA MF++DIAG+++LYT
Sbjct: 116 SDALFSPLDMTMSLASIIPVSAHQLITICPGVSFTPYHAGHVLGACMFLIDIAGLKILYT 175
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYSREEDRHL AELP PD+ I+ESTYGVQ + R +E+RFT+++HS I +GG VL
Sbjct: 176 GDYSREEDRHLVKAELPPVRPDVLIVESTYGVQSLEGREEKEQRFTNLVHSVIRRGGHVL 235
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+PAFALGRAQELLLILDEYW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN IR++F
Sbjct: 236 LPAFALGRAQELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNNNIRSRF 295
Query: 310 AN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
A NPF FK ++ P VV+ASPG +Q G SR+LF++W D +N +I G
Sbjct: 296 AKRDNPFVFK-------CKKIAEGPPCVVLASPGFMQVGPSRELFELWAPDARNGLIITG 348
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y +EGTLA+ I++EP+E T + G T P + V Y+SFSAH DY+Q S F++ + +++L
Sbjct: 349 YSIEGTLARDIMTEPEEFTSLKGATIPRKISVDYVSFSAHVDYSQNSEFIELVKAQHVVL 408
Query: 429 VHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
VHGE MGRL+ + + D + KI TP+N +++++ F E++AK IG LA+K P+
Sbjct: 409 VHGEQTAMGRLRGAMTSRFKERDEDVKIHTPRNLETLQLSFRGERVAKAIGTLADKPPQT 468
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ +SG+LV K ++Y ++ P DL F+ LST +TQR
Sbjct: 469 NDLLSGLLVAKDYSYTLLDPRDLRDFAGLSTCTVTQR 505
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/511 (52%), Positives = 357/511 (69%), Gaps = 12/511 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L +T LGAG EVGRSC + Y+GKTI+ D G+HPAYSGMA+LP+ DE+D S +D +LITH
Sbjct: 7 LSVTLLGAGQEVGRSCCVLQYRGKTIVCDAGVHPAYSGMASLPFVDELDWSTVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y +EKT F KG+V+MTH TKA++K ++ DYV++S S D LF ++
Sbjct: 67 FHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMSTSST-DALFSPLEM 125
Query: 141 NRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREEDRH
Sbjct: 126 TMSLSSIIPVSAHQLISPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L +AE+P PD+ I+ESTYGVQ + R+ +E RFT ++HS I +GG VL+P FALGRAQ
Sbjct: 186 LVSAEVPPVRPDVLIVESTYGVQSLEARDEKEVRFTSLVHSIIRRGGHVLLPTFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFK 318
ELLLILDEYW HP+ HN+ IYYAS LA+KCMAVYQTYI +MN IR++FA NPF FK
Sbjct: 246 ELLLILDEYWKKHPDLHNVTIYYASSLARKCMAVYQTYIHTMNANIRSRFAKRDNPFVFK 305
Query: 319 HIS----PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
HIS P +D P VV+ASPG LQSG SR+L ++W D +N ++ GY VEGT
Sbjct: 306 HISNLAQPRGWERKIADGPPCVVLASPGFLQSGPSRELLELWAPDPRNGLIVTGYSVEGT 365
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LA+ I++EP E+ + G P + V YISFSAH DY Q S F++++ +++LVHGE
Sbjct: 366 LARDIMNEPDEIMSLKGNPIPRKISVDYISFSAHVDYTQNSDFIEQVKAQHVVLVHGEQT 425
Query: 435 EMGRLKTKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
MGRL+ + + D + KI TP+N +++E+ F E++AK IG LA K PE +SG
Sbjct: 426 AMGRLRAAMTSRYKDRDEDVKIHTPRNLETLELSFRGERVAKAIGTLANKVPEPNSILSG 485
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LV K ++Y ++ P DL F+ LST + QR
Sbjct: 486 LLVSKDYSYTLLDPRDLKDFTGLSTCTVMQR 516
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/523 (51%), Positives = 356/523 (68%), Gaps = 20/523 (3%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSY--KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
G+ L + PLGAG+EVGRSC+ S+ K ++FDCGIHP +SG+++LPYFDEID SAIDV
Sbjct: 45 GELLELIPLGAGSEVGRSCIVASFFEGKKNVMFDCGIHPGFSGLSSLPYFDEIDVSAIDV 104
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS------------ 126
LL+THFHLDH A++P+ + +T FKGRVFMTHATKAI+ +L++D+V++S
Sbjct: 105 LLVTHFHLDHCAAVPFLVNRTNFKGRVFMTHATKAIFHMLMSDFVRLSARQQPKAKGSEE 164
Query: 127 --KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
+ E L+D +D+ +MDKIEV+DFHQ + ++GIK Y AGHVLGA F V++ G
Sbjct: 165 KEEEEDESQLWDAKDLKAAMDKIEVIDFHQEINIDGIKVTPYRAGHVLGACQFEVNVGGC 224
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
RVLYTGDYSR DRHL AA++P+ +P + I+ESTYGV H P+ RE RFTD IH + +
Sbjct: 225 RVLYTGDYSRVADRHLPAADIPKKTPHVVIVESTYGVSPHTPKEEREARFTDKIHGILGR 284
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+ L+P ALGRAQELLLIL++YW HPE ++P+Y AS LA+K M V++TYI +N
Sbjct: 285 GGKCLLPVVALGRAQELLLILEDYWEKHPEMSHVPVYQASALARKAMTVFETYINVLNAD 344
Query: 305 IRNQFANSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
I+ QF NPF FKH+ LN D + GP VV+A+P LQSG SR+LF+ WC N
Sbjct: 345 IKRQFEEKNPFNFKHVQSLNRASDLDGNTGPCVVLATPSMLQSGTSRELFENWCESSDNG 404
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
VI + V+GTLA+ I+S+ K V +G L V ISFSAHADY QT FL L P
Sbjct: 405 VVICDFAVQGTLAREILSDVKTVKARDGRELQLRCSVDAISFSAHADYPQTQQFLDILNP 464
Query: 424 PNIILVHGESHEMGRLKTKLMTE-LADCNT-KIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
P+++LVHGE+ EM RLK L + +AD + PKNCQSVE+ + EK+AK G LA
Sbjct: 465 PHVVLVHGETSEMARLKRALEAKAVADGKEMNVFAPKNCQSVEIRYRGEKVAKVAGSLAS 524
Query: 482 KT-PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P G+ V G+LV K F + ++AP+D+ ++L T+ +TQR
Sbjct: 525 DCLPVEGQEVRGVLVAKDFGHLLVAPEDVRDHARLRTSVVTQR 567
>gi|393245131|gb|EJD52642.1| Metallo-hydrolase/oxidoreductase [Auricularia delicata TFB-10046
SS5]
Length = 751
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/511 (53%), Positives = 356/511 (69%), Gaps = 12/511 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L IT LGAG EVGRSC + Y+G T++ D G+HPAYSGMA+LP+ DE+D S +D LLITH
Sbjct: 7 LSITLLGAGQEVGRSCCVLKYRGLTVVCDAGVHPAYSGMASLPFVDELDWSTVDALLITH 66
Query: 84 FHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAASL Y +EKT F+ G+V+MTH TKA+YK ++ D+V++S S D LF D+
Sbjct: 67 FHLDHAASLTYIMEKTNFRDGNGKVYMTHPTKAVYKFMMQDFVRMSAAST-DALFTPLDL 125
Query: 141 NRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ S+ I + HQ + G+ F Y AGHVLGA MF +DIAGV+VLYTGDYSREEDRH
Sbjct: 126 SMSLASIIPISAHQVISPCPGLTFTPYHAGHVLGACMFHIDIAGVKVLYTGDYSREEDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AE+P PD+ I+ESTYGVQ R +E RF +IH I +GG L+P FALGRAQ
Sbjct: 186 LVKAEIPPVRPDVLIVESTYGVQSVGNREEKEGRFLSLIHEIIKRGGHALLPVFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFK 318
ELLL+LD+YW+ HPE H++PIYYAS LA+KCMAVYQTYI +MN IR +FA NPF FK
Sbjct: 246 ELLLVLDDYWAKHPELHSVPIYYASNLARKCMAVYQTYIHTMNSNIRQRFARRDNPFIFK 305
Query: 319 HISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
HIS L +D P VV+ASPG LQSG SR+L ++W D +NA V+ GY VEGT
Sbjct: 306 HISHLPQTRGLERKIADGPPCVVLASPGMLQSGTSRELLELWAPDPRNALVVTGYSVEGT 365
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LA+ I+++P E+ + G T P + VHYISFSAH DYAQ S F++ + +++LVHGE +
Sbjct: 366 LARDILNDPDEIQGLRGNTIPRRLSVHYISFSAHVDYAQNSEFIELIKAQHVVLVHGEQN 425
Query: 435 EMGRLKTKLMTELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
MGRL+ L + D + KI TP+N +++ + F EK+AK IG LA + + G +SG
Sbjct: 426 NMGRLRAALQSRYKDRDEDIKIHTPRNLETLRLNFRGEKVAKAIGGLALQPQKPGIMLSG 485
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LV K ++Y ++ P DL F+ LST+ +TQR
Sbjct: 486 LLVSKDYSYTLLQPHDLRDFAGLSTSAVTQR 516
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/521 (52%), Positives = 359/521 (68%), Gaps = 18/521 (3%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAP L IT LGAG EVGRSC + Y+G TI+ D GIHPAYSGMA+LP+ DE+D
Sbjct: 3 DAPT------LSITLLGAGQEVGRSCCVLQYRGITIVCDAGIHPAYSGMASLPFVDELDW 56
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +D LL+THFHLDHAA+L Y +EKT F KG+V+MTH TKA++K ++ DYV++S S
Sbjct: 57 STVDALLVTHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDYVRMSSSS- 115
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
D LF D++ S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYT
Sbjct: 116 SDALFTPLDMSMSLSSIIAISAHQLITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYT 175
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYSREEDRHL AE+P PD+ I+ESTYGVQ + R +E RFT ++HS I +GG VL
Sbjct: 176 GDYSREEDRHLVKAEVPPVRPDVLIVESTYGVQSLECREDKEARFTGLVHSIIRRGGHVL 235
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+PAFALGRAQELLLILDEYW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN IR +F
Sbjct: 236 LPAFALGRAQELLLILDEYWKRHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNIRTRF 295
Query: 310 AN-SNPFKFKHIS----PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
A NPF FKHIS P ++ P VV+ASPG QSG SR+L ++W D +N
Sbjct: 296 AKRDNPFVFKHISNLPQPKGWERKIAEGPPCVVLASPGFCQSGPSRELLELWAPDARNGF 355
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
++ GY VEGT+A+ I++EP E+ G P + V YISFSAH DY+Q + F+ +
Sbjct: 356 ILTGYSVEGTMARDILNEPDEIMSTKGNIIPRKISVDYISFSAHVDYSQNAEFIDLVKAQ 415
Query: 425 NIILVHGESHEMGRLKTKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+I+LVHGE MGRL+ L ++ D + KI TP+N +++E+ F E++AK IG LA+
Sbjct: 416 HIVLVHGEQTAMGRLRGALTSKYKDREEDVKIHTPRNLETLELTFRGERVAKAIGTLADN 475
Query: 483 TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ + +SG+LV K ++Y ++ P DL F+ LST +TQR
Sbjct: 476 PPQQNDVLSGLLVAKDYSYTLLDPRDLRDFAGLSTCTLTQR 516
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/511 (52%), Positives = 357/511 (69%), Gaps = 12/511 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L IT LGAG EVGRSC + Y KTI+ D G+HPA+SGMA+LP+ DE+D S +D +LITH
Sbjct: 7 LSITMLGAGQEVGRSCCVLQYHDKTIVLDAGVHPAHSGMASLPFVDELDWSTVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y +EKT F KG+V+MTH TKA++K ++ D+V++S S D L D+
Sbjct: 67 FHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSNSST-DALISPLDL 125
Query: 141 NRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ S+ I + HQ + G+ F Y AGHVLGA M+++D+AG+++LYTGDYSREEDRH
Sbjct: 126 SMSISSIIPVSAHQLITPCPGVTFTPYHAGHVLGACMYLIDMAGIKILYTGDYSREEDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AE+P PD+ I+ESTYGVQ + R+ +E RFT ++HS I +GG VL+PAFALGRAQ
Sbjct: 186 LVKAEVPPVRPDVLIVESTYGVQSLEARDEKELRFTSLVHSIIRRGGHVLLPAFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFK 318
ELLLILDEYW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN IR +FA NPF FK
Sbjct: 246 ELLLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNSNIRTRFAKRDNPFVFK 305
Query: 319 HISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
HIS + + ++ P VV+ASPG +QSG SRQL ++W D +N ++ GY VEGT
Sbjct: 306 HISNMPQSSGWERKIAEGPPCVVLASPGFMQSGPSRQLLELWAPDSRNGLIVTGYSVEGT 365
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LA+ I++EP E+ M G T + V YISFSAH DY+Q S F++ + P+I+LVHGE
Sbjct: 366 LAREIMTEPDEIISMKGATIQRKLSVDYISFSAHVDYSQNSEFIEMIKAPHIVLVHGEQT 425
Query: 435 EMGRLKTKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
MGRL+ L + + KI TP+N +++ + F E++AK IG LA + P+ +T+S
Sbjct: 426 AMGRLRAALQARYKNREEDVKIHTPRNLETLNLTFRGERVAKAIGTLAARPPKANDTISA 485
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LV K F+Y ++ P DL F+ LST +TQ+
Sbjct: 486 LLVSKDFSYTLLDPRDLRDFAGLSTCVVTQQ 516
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 262/520 (50%), Positives = 360/520 (69%), Gaps = 20/520 (3%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L +T LGAG EVGRSC + Y+GKT++ D G+HPAY+GMA+LP+ D++D S++D +LITH
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGKTLVCDTGVHPAYNGMASLPFIDDLDWSSVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKV---------SVE 131
FHLDHAA+L Y EKT FK G+V+MTH TKA++K ++ D+V+ + +
Sbjct: 67 FHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRALSVKCPHSSASS 126
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
D LF D+ S+ I + HQ + V G+ F Y AGHVLGA MF++DIAG+++LYTG
Sbjct: 127 DALFSPLDMQMSLASIIAVSAHQLITVCPGVSFIPYHAGHVLGACMFLIDIAGLKILYTG 186
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSREEDRHL AELP PD+ ++ESTYGV + R +E RFT ++HS I +GG VL+
Sbjct: 187 DYSREEDRHLIKAELPPIRPDVLVVESTYGVHTGESREEKEHRFTSLVHSIIRRGGHVLL 246
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P FALGRAQELLLILD+YW HP+ HN+P+YYAS LA+KCMAVYQTYI +MN IR++FA
Sbjct: 247 PTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQTYIHTMNANIRSRFA 306
Query: 311 -NSNPFKFKHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FKHIS + + +D P VV+ASPG +Q G SR+LF+ WC D +N +
Sbjct: 307 RRDNPFVFKHISNVPQTRGWEKKIADGPPCVVLASPGFMQVGPSRELFEHWCPDARNGLI 366
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
I GY +EGT A+ I++EP+E T + G T P + V ISFSAH DYAQ S F++++ +
Sbjct: 367 ITGYSIEGTPARDIMTEPEEFTTLKGATIPRRISVDEISFSAHVDYAQNSEFIEQVRAQH 426
Query: 426 IILVHGESHEMGRLKTKLMTEL--ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
++LVHGE+ MGRL+ + + D + KI TP+N +++ + F E++AK IG LA+
Sbjct: 427 VVLVHGEATGMGRLRAAMQSRFKEKDEDVKIHTPRNLETLNLSFRGERVAKAIGTLADSP 486
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ G+ VSG+LV K ++Y ++ P DL F+ L+T +TQR
Sbjct: 487 PQTGDIVSGLLVAKDYSYTLLDPRDLRDFAGLTTCAVTQR 526
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 273/544 (50%), Positives = 371/544 (68%), Gaps = 47/544 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGKTI+ D GIHPAY G+A+LP++D+ D S++D+LLI+HFHLDH
Sbjct: 14 LGGGNEVGRSCHILQYKGKTIMLDAGIHPAYQGIASLPFYDDFDLSSVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV-----EDMLFDEQDINRS 143
AASLPY +++T FKGRVFMTH TKAIY+ LL D+V+V+ + + +D L+ ++D+ S
Sbjct: 74 AASLPYVMQRTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGINSTGEDDNLYTDEDLVES 133
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
DKIE +D+H TV+VNGIKF Y AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +A
Sbjct: 134 FDKIETIDYHSTVDVNGIKFTAYHAGHVLGAAMFQIEIAGLRVLFTGDYSRETDRHLNSA 193
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P S DI I+EST+G H+PR REK+ T +IH+T+SQGGRVL+P FALGRAQEL+L
Sbjct: 194 EVPPLSSDILIVESTFGTATHEPRLSREKKLTQLIHTTVSQGGRVLMPVFALGRAQELML 253
Query: 264 ILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFK 318
ILDE+WS H + +PI+YAS LA+KCM+V+QTY+ MN+ IR +F +S NPF FK
Sbjct: 254 ILDEFWSQHADELGGGQVPIFYASDLARKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFK 313
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+IS L ++++F D GPSV++ASPG LQSG+SR L + WC D KN +I GY VEGT+AK
Sbjct: 314 NISYLKNLEEFQDFGPSVMLASPGMLQSGISRDLLERWCPDDKNLVLITGYSVEGTMAKF 373
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ EP + +N +T P QV ISF+AH D+ + F++++ NIILVHGES+ M
Sbjct: 374 IMLEPDTIPSVNNPEITIPRRCQVEEISFAAHVDFQENLEFIEKINANNIILVHGESNPM 433
Query: 437 GRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT-------- 483
GRLK+ L++ A + + P+N V + + K+AK IG + E+
Sbjct: 434 GRLKSALLSNFASLKGTENEVHVFNPRNSVEVSVEYTGTKIAKAIGNIVEEVRKETLSAS 493
Query: 484 -------PEVGET------------VSGILV--KKGFTYQIMAPDDLHI-FSQLSTANIT 521
PEV +SGILV ++ F +++ DL ++LST +
Sbjct: 494 DAVKNEKPEVENQISVDQKQTKDVIISGILVSDERNFDLNLVSLSDLREHHTELSTTILK 553
Query: 522 QRIT 525
+R T
Sbjct: 554 ERQT 557
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 267/509 (52%), Positives = 358/509 (70%), Gaps = 12/509 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGAG EVGRSC + Y+GKTI+ D G+HPAYSG+A+LP+ DE+D S +DVLLITHFH
Sbjct: 9 ITLLGAGQEVGRSCCVIQYRGKTIVCDAGVHPAYSGIASLPFVDELDWSTVDVLLITHFH 68
Query: 86 LDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
LDHAA+L Y EKT F KG+V+MTH TKA++K ++ D++++S S D LF D++
Sbjct: 69 LDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFMRMSS-STSDALFSPLDLSM 127
Query: 143 SMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREED HL
Sbjct: 128 SLSSIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDCHLV 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AE+P F PD+ IIESTYGVQ + R +E+RFT+++HS I +GG VL+P FALGRAQEL
Sbjct: 188 KAEVPPFRPDVLIIESTYGVQTLECREDKEQRFTNLVHSIIRRGGHVLLPTFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFKHI 320
LLILDEYW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN +R++FA NPF FKHI
Sbjct: 248 LLILDEYWKKHPDLHNVPIYYASSLARKCMAVYQTYIHTMNANVRSRFAKRDNPFVFKHI 307
Query: 321 SPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
S L + +D P VV+ASPG + G SR+L ++W D +N +I GY +EGT+A
Sbjct: 308 SNLPHTRGWERKVADGPPCVVLASPGFVTVGASRELLEMWAPDSRNGIIITGYSIEGTMA 367
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ I SEP E+ + G+ P + V ISFSAH DY+Q S F++ + +I+LVHGE M
Sbjct: 368 RDIQSEPDEIMSLKGVPIPRKLSVDEISFSAHVDYSQNSEFIEMVKAQHIVLVHGEQTAM 427
Query: 437 GRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
GRL+ + D + KI TP+N +++E+ F E++AK IG LA + P+ G+ +SG+L
Sbjct: 428 GRLRAAMTDRYKSRDEDVKIHTPRNLETLELTFRGERVAKAIGTLAAQPPQSGDLLSGLL 487
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
V K ++Y ++ P DL F+ LST +TQR
Sbjct: 488 VAKDYSYTLLDPRDLRDFAGLSTCVVTQR 516
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/547 (50%), Positives = 365/547 (66%), Gaps = 50/547 (9%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKTI+ D G+HPAY GMA+LP++DE D S IDVLLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTIMLDAGVHPAYQGMASLPFYDEFDLSTIDVLLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINR 142
AASLPY ++KT FKGRVFMTH TKAIY+ LL D+V+V+ + V +D ++ ++D+
Sbjct: 74 AASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGVNSTIGNDDNIYTDEDLAE 133
Query: 143 SMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
S DKIE +D+H TV+V+GIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +
Sbjct: 134 SFDKIETVDYHSTVDVDGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREMDRHLNS 193
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
AE+P D+ I+EST+G H+PR REK T +IHST+S+GGRVL+P FALGRAQE++
Sbjct: 194 AEVPSLPSDVLIVESTFGTATHEPRLNREKNLTQLIHSTVSRGGRVLLPVFALGRAQEIM 253
Query: 263 LILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKF 317
LILDEYWS H E +PIYYAS LAKKCM+V+QTY+ MN+ IR +F +S NPF F
Sbjct: 254 LILDEYWSQHAEELGSGQVPIYYASNLAKKCMSVFQTYVNMMNDDIRRKFRDSQTNPFIF 313
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
K+IS L ++++F D GPSV++ASPG LQSGLSR + + WC D+KN +I GY +EGT+AK
Sbjct: 314 KNISYLRNLEEFQDFGPSVMLASPGMLQSGLSRDVLEKWCPDEKNLVLITGYSIEGTMAK 373
Query: 378 TIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I+ EP + +N +T P V ISF+AH D+ + F++++ NIILVHGES+
Sbjct: 374 FIMLEPDTIPSINNPEVTVPRRCNVEEISFAAHVDFQENLEFIEKISANNIILVHGESNP 433
Query: 436 MGRLKTKLMTEL-----ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA---------- 480
MGRLK+ +++ + I P+NC VE+ F K+AK IG +
Sbjct: 434 MGRLKSAILSNFTALKGTENEVHIFNPRNCVEVELEFKGIKVAKAIGNIVDEVGKEGLDN 493
Query: 481 -------------------EKTPEVGETVSGILV--KKGFTYQIMAPDDLHI-FSQLSTA 518
E P VSGILV +K F +++ DL S+LST
Sbjct: 494 LLGNKNEEKESDDTTEPTIEDKPNSDIVVSGILVSDEKNFDLNLVSLSDLREHHSELSTT 553
Query: 519 NITQRIT 525
+ +R T
Sbjct: 554 VLRERQT 560
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 266/507 (52%), Positives = 343/507 (67%), Gaps = 11/507 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I PLGAG+EVGRSC+ Y+ KT++FDCGIHPA+ GM +LP DEID +DV LITHFH
Sbjct: 1 IIPLGAGSEVGRSCIIFKYQDKTVMFDCGIHPAFKGMDSLPLLDEIDIDTVDVALITHFH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH A++PY L KT FKGR+FMTH TKAIY LL D K SK S E+ LF+E D+ SM
Sbjct: 61 LDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLRDLAKGSKHSSEEALFNEDDLEASMQ 120
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+IEV+DF+QT+EV G++ Y AGHVLGAAMF+V++AG R LYTGDYSR DRHL AA++
Sbjct: 121 RIEVVDFYQTIEVAGMQITPYRAGHVLGAAMFLVEVAGCRCLYTGDYSRLPDRHLPAADI 180
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P P I I+ESTYG H PR RE+ D I +TI++GGRV++P ALGRAQELLL+L
Sbjct: 181 PPVKPHIVIVESTYGTSRHLPRLQREQLLLDTIRNTINRGGRVIMPVVALGRAQELLLLL 240
Query: 266 DEYWSNH-PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI---- 320
DEYW H E IPIY AS + K + VYQTY+ S+N+ I+ F NPFKF+H+
Sbjct: 241 DEYWEAHKSELSGIPIYQASSMMSKALGVYQTYVESLNDDIKRVFHERNPFKFRHVQTLK 300
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+P + I D+S GP V+MA+P GLQSG SR F+ WC D +N C+I + V+GTLAK I+
Sbjct: 301 NPAHFISDYS--GPCVIMATPSGLQSGASRDFFEAWCEDSRNTCIICDFAVQGTLAKEIL 358
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
P +T G PL + VH ISFSAHADY QTS FL + PP+++LVHGE EM +L
Sbjct: 359 GGPSSITTREGRRVPLRIAVHNISFSAHADYDQTSGFLDAVRPPHVVLVHGEYGEMRKLA 418
Query: 441 TKLM--TELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK- 497
L + A ++ TP Q+V + ++ + GRL EK P G V G+LV++
Sbjct: 419 KALKDGAKAAGVAREVYTPILAQTVAVEHKPDRSVRLQGRLGEKPPREGAAVRGVLVRQG 478
Query: 498 -GFTYQIMAPDDLHIFSQLSTANITQR 523
GF Q++AP DL +++L ++TQR
Sbjct: 479 GGFATQLLAPSDLPRYTKLLKGSVTQR 505
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 261/520 (50%), Positives = 360/520 (69%), Gaps = 20/520 (3%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L +T LGAG EVGRSC + Y+GKT++ D G+HPA++GMA+LP+ D++D S++D +LITH
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGKTLVCDTGVHPAHNGMASLPFIDDLDWSSVDAILITH 66
Query: 84 FHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSV---------E 131
FHLDHAA+L Y EKT FK G+V+MTH TKA++K ++ D+V+ + +
Sbjct: 67 FHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRANFVKCPHSSASS 126
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
D LF D+ S+ I + HQ + V G+ F Y AGHVLGA MF++DIAG+++LYTG
Sbjct: 127 DALFSPLDMQMSLASIIAVSAHQLITVCPGVSFIPYHAGHVLGACMFLIDIAGLKILYTG 186
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSREEDRHL AELP PD+ ++ESTYGV + R +E RFT ++HS I +GG VL+
Sbjct: 187 DYSREEDRHLIKAELPPIRPDVLVVESTYGVHTGESREEKEHRFTSLVHSIIRRGGHVLL 246
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P FALGRAQELLLILD+YW HP+ HN+P+YYAS LA+KCMAVYQTYI +MN IR++FA
Sbjct: 247 PTFALGRAQELLLILDDYWKKHPDLHNVPVYYASGLARKCMAVYQTYIHTMNANIRSRFA 306
Query: 311 -NSNPFKFKHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FKHIS + + +D P VV+ASPG +Q G SR+LF+ WC D +N +
Sbjct: 307 RRDNPFVFKHISNVPQTRGWEKKIADGPPCVVLASPGFMQVGPSRELFEHWCPDARNGLI 366
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
I GY +EGT A+ I++EP+E T + G T P + V ISFSAH DYAQ S F++++ +
Sbjct: 367 ITGYSIEGTPARDIMTEPEEFTTLKGATIPRRISVDEISFSAHVDYAQNSEFIEQVRAQH 426
Query: 426 IILVHGESHEMGRLKTKLMTEL--ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
++LVHGE+ MGRL+ + + D + KI TP+N +++ + F E++AK IG LA+
Sbjct: 427 VVLVHGEATGMGRLRAAMQSRFKEKDEDVKIHTPRNLETLNLSFRGERVAKAIGTLADSP 486
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ G+ VSG+LV K ++Y ++ P DL F+ L+T +TQR
Sbjct: 487 PQTGDIVSGLLVAKDYSYTLLDPRDLRDFAGLTTCAVTQR 526
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/507 (52%), Positives = 350/507 (69%), Gaps = 11/507 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I PLGAG+EVGRSC+ + Y+ KT++FDCGIHPA+ GM +LP D+ID + +DV LITHFH
Sbjct: 26 IIPLGAGSEVGRSCIILKYQDKTVMFDCGIHPAFKGMDSLPLLDDIDIATVDVALITHFH 85
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH A++PY L KT FKGR+FMTH TKAIY LL D K +K S E+ LF+E+D++ SM+
Sbjct: 86 LDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLRDLAKGAKHSSEEALFNEEDLDASME 145
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+IEV+DF+QT+EV+G++ Y AGHVLGAAMFMV++AG+R LYTGDYSR DRHL A+
Sbjct: 146 QIEVVDFYQTIEVSGMQITPYRAGHVLGAAMFMVEVAGLRCLYTGDYSRLPDRHLPGADT 205
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P +P I I+ESTYG H PR RE+ D I +T+++GGRVL+P ALGRAQELLL+L
Sbjct: 206 PPVTPHIVIVESTYGTSRHLPRQQREQLLIDNIRTTLNRGGRVLMPIVALGRAQELLLLL 265
Query: 266 DEYWSNH-PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI---- 320
DEYW H E IPIY AS + K + VYQTY+ S+NE I+ F + NPFKF+H+
Sbjct: 266 DEYWEAHKSELGGIPIYQASSMMSKALGVYQTYVESLNEDIKKVFHDRNPFKFRHVQTLK 325
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+P + I D+S GP V+MA+P GLQSG SR F+ WC D +N C+I + V+GTLAK I+
Sbjct: 326 NPAHFIADYS--GPCVIMATPSGLQSGASRDFFEAWCEDARNTCIICDFAVQGTLAKEIL 383
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
P +T G PL + VH ISFSAHAD+ QTS FL + PP+++LVHGE EM +L
Sbjct: 384 GGPSSITTREGRRVPLRIAVHNISFSAHADFDQTSGFLDTVKPPHVVLVHGEYGEMRKLA 443
Query: 441 TKLM--TELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK- 497
L + A ++ TP Q+V + ++ + GRL EKT + G V G+LV++
Sbjct: 444 KALKDGAKAAGLAREVYTPVLQQTVAIEHQPDRSVRLQGRLGEKTLQPGGVVRGVLVRQA 503
Query: 498 -GFTYQIMAPDDLHIFSQLSTANITQR 523
GF Q++ PDDL +++L +TQR
Sbjct: 504 GGFGQQLLHPDDLPRYTKLLKGRVTQR 530
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 264/510 (51%), Positives = 336/510 (65%), Gaps = 57/510 (11%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL--LLTDYVKVSKVSVEDMLF 135
+LLI+ FHLD FL K+++ ++ +K L K S +S +DML+
Sbjct: 66 LLLISQFHLDSHNLYSIFLRKSSW---IYHPQTSKTXKNLNSFCWHLSKFSNISADDMLY 122
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+
Sbjct: 123 TETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FAL
Sbjct: 183 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF
Sbjct: 243 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 302
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTL
Sbjct: 303 VFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTL 362
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
AK ILVHGE +E
Sbjct: 363 AK-------------------------------------------------ILVHGEQNE 373
Query: 436 MGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
M RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSG
Sbjct: 374 MARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSG 433
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
ILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 434 ILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 463
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 256/470 (54%), Positives = 343/470 (72%), Gaps = 17/470 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + +KGKTI+ D G+HPA+ G ++LP++DE D S IDVLLI+HFH+DH
Sbjct: 14 LGGGNEVGRSCHILQFKGKTIMLDAGVHPAHQGYSSLPFYDEFDLSKIDVLLISHFHVDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV-----EDMLFDEQDINRS 143
AASLPY ++KT F+GRVFMTH TKAIY+ LL D+V+V+ + V +D L+ ++D+ S
Sbjct: 74 AASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGVSSGGKDDNLYTDEDLAES 133
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+IE +DFH TV+VNGIKF Y AGHVLGAAMF ++IAGVR+L+TGDYSRE DRHL +A
Sbjct: 134 FDRIETIDFHSTVDVNGIKFTAYHAGHVLGAAMFQIEIAGVRILFTGDYSRELDRHLNSA 193
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P D+ I+EST+G H+PR RE++ T +IHST+S+GGRVL+P FALGRAQE++L
Sbjct: 194 EVPTLPSDVHIVESTFGTATHEPRVNRERKLTQLIHSTVSRGGRVLLPVFALGRAQEIML 253
Query: 264 ILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFK 318
ILDEYW+ H + +PIYYAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK
Sbjct: 254 ILDEYWTQHSDELGGGQVPIYYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFVFK 313
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+IS L +IDDF D GPSV++ASPG LQSGLSR + + WC + KN +I GY VEGT+AK
Sbjct: 314 NISYLRNIDDFQDFGPSVMLASPGMLQSGLSRDVLEKWCPEDKNLVLITGYSVEGTMAKF 373
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++ EP + +N T P Q+ ISF+AH D+ + F++++ PNIILVHGES+ M
Sbjct: 374 LMLEPDTIPSINNPEATIPRRCQIEEISFAAHVDFRENLEFIEKISAPNIILVHGESNPM 433
Query: 437 GRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
GRLK+ L++ A + + P+NC V + FN K+AK +G + +
Sbjct: 434 GRLKSALLSNFASLRGSEQEVHVFNPRNCVDVTLEFNGIKIAKAVGNIVD 483
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/512 (53%), Positives = 357/512 (69%), Gaps = 13/512 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L +T LGAG EVGRSC + Y+GKT++ D G+HPAY+GMA+LP+ DE+D S +DVLLITH
Sbjct: 7 LSVTCLGAGQEVGRSCCVLQYRGKTVVCDAGVHPAYTGMASLPFIDELDWSTVDVLLITH 66
Query: 84 FHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAASL Y +EKT F+ G+V+MTH TKA+YK ++ D+V++S S D LF D+
Sbjct: 67 FHLDHAASLTYIMEKTNFRDGHGKVYMTHPTKAVYKFMMQDFVRMSSSSS-DALFSPLDL 125
Query: 141 NRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ S+ I + HQ + GI F Y AGHVLGA MF++DIAG+++LYTGDYSREEDRH
Sbjct: 126 SMSLSSIIPVSAHQLITPFPGISFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AELP PD+ I EST+GVQ R +E RFT+++HS I +GG VL+P FA+GRAQ
Sbjct: 186 LVKAELPPIRPDVLIAESTWGVQSGDSREEKEARFTNIVHSIIKRGGHVLMPTFAIGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFK 318
ELLLILDEYWS HPE HN+PIYYAS LA+KCMAVYQTYI +MN IR++FA NPF FK
Sbjct: 246 ELLLILDEYWSKHPELHNVPIYYASSLARKCMAVYQTYIHTMNSNIRSRFAKRDNPFVFK 305
Query: 319 HIS--PLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
HIS P N ++ P V++ASPG LQSG SR+L ++ D +N V+ GY VEGT
Sbjct: 306 HISHAPQNRGWERKLAEGPPCVILASPGMLQSGPSRELLELLAPDSRNGLVLTGYSVEGT 365
Query: 375 LAKTIISEPKEV-TLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
A+ II+EP E+ + G P + V YISFSAH D AQ F++++ ++ILVHGE
Sbjct: 366 PARDIINEPDEIQSYRTGAPIPRKLSVDYISFSAHVDGAQNQEFIEKVGAQHVILVHGEQ 425
Query: 434 HEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
MGRL L + D KI P+N +++++ F E++AK IG LA K P+ ET+S
Sbjct: 426 TAMGRLSAALQAKYKARDEEVKIHMPRNSETLDLTFRGERVAKAIGTLASKPPQANETLS 485
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+LV K ++Y ++AP DL F+ LST +TQR
Sbjct: 486 GLLVSKDYSYTLLAPRDLRDFAGLSTCVVTQR 517
>gi|392338884|ref|XP_003753662.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
gi|392345811|ref|XP_003749372.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
Length = 1015
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/513 (51%), Positives = 352/513 (68%), Gaps = 9/513 (1%)
Query: 18 SREGDQLIITPLGAGNEVGRS-CVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
+ E +QL+I PLGAG S C+ + +KG+ I+ DCGI+P GM ALPY D + + I
Sbjct: 6 AEESNQLLIXPLGAGGPTRTSQCIILEFKGRKIMLDCGIYPVLEGMDALPYIDPNNLAEI 65
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D+LLI+HFHLDH +L +FL+KT+FKG +FMTHATKAIY+ LL+DYVKVS +S +DML
Sbjct: 66 DLLLISHFHLDHCEALXWFLQKTSFKGWMFMTHATKAIYRWLLSDYVKVSNISADDMLHT 125
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
E D+ SM+K++ ++FH+ + IKFWCY A HVLGA MF+++IAGV++LYTGD+SR+E
Sbjct: 126 ETDLEESMNKVKTINFHEVKAIEVIKFWCYHASHVLGAVMFVIEIAGVKILYTGDFSRQE 185
Query: 197 DRHLRAAELPQF---SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
RHL AAE+P + DI I+ES YG +++ E RF + +H+ +++ GR LIP
Sbjct: 186 VRHLMAAEIPXYLYIKSDILIVESMYGTHIYEKHEEXEARFCNAVHNIVNKXGRGLIPVL 245
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
LGRAQELL ILDEYW +HPE +IPIYY PL KKCMAVYQTY MN +I Q +N
Sbjct: 246 VLGRAQELLPILDEYWQDHPELQDIPIYYTLPLXKKCMAVYQTYANDMNGKIWKQININN 305
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD-IWCSDKKNACVIPGYVVE 372
PF F+HIS L S+D F D+G SVVM SPG +Q+G+SR+ F+ WC K+N ++ GY E
Sbjct: 306 PFVFEHISNLKSMDHFDDIGLSVVMXSPGMIQNGVSRERFERXWCH-KRNGVIVTGYCAE 364
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
G LAK I+SEP+E+T M G PL M V YISFSA DY QTS F+ L P ++I VHGE
Sbjct: 365 GILAKHIMSEPEEITTMPGQKLPLKMSVDYISFSARTDYWQTSEFIHALKPSHVISVHGE 424
Query: 433 SHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
+E+ RLK L+ + D + K+ +P N ++V + F EK+AK +G A+K PE G+
Sbjct: 425 QNEIDRLKAALIKKYEDNDEVHIKVHSPWNTETVALNFMGEKLAKVMGVSADKKPEQGQQ 484
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VSGIL K+ F I+ P DL + L+ + + Q
Sbjct: 485 VSGILAKRNFNDHILFPCDLSNYIDLAMSTVRQ 517
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/515 (49%), Positives = 363/515 (70%), Gaps = 18/515 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGAG EVGRSC + YK T++ D G+HPAY+GMAALP+ DEID S +D +LITHFHLDH
Sbjct: 2 LGAGQEVGRSCCVIEYKSVTVVCDTGVHPAYTGMAALPFIDEIDWSTVDAILITHFHLDH 61
Query: 89 AASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
AASL Y +E T FK G+VFMTH TKA+Y+ L+ D+V++S + + LF+E+ + S +
Sbjct: 62 AASLTYIMENTNFKEGNGKVFMTHPTKAVYRFLMQDFVRMSTIGTDGELFNEEQMTLSYE 121
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
I +D+HQ + + ++F Y AGHVLGAAMF+++IAG+RVLYTGDYS EEDRHL A++
Sbjct: 122 SINAIDYHQEISLGSLRFTSYPAGHVLGAAMFLIEIAGIRVLYTGDYSTEEDRHLIPAKV 181
Query: 206 PQFS--PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
P ++ PD+ I ESTYGVQ +PR +E+RFT ++ + +GGRVL+P FALGRAQELLL
Sbjct: 182 PNWNEKPDVMICESTYGVQSLEPRPEKEERFTALVQMILKRGGRVLMPVFALGRAQELLL 241
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NP-------- 314
ILDEYWSNHPE ++IPIYY S LA KCM VYQT+I MNE I+++F NP
Sbjct: 242 ILDEYWSNHPELNSIPIYYISNLAAKCMKVYQTFIHGMNEEIKSKFNKGINPWTFFREGK 301
Query: 315 --FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
FK +++ L ++D F D GP VVMASPG + +G SR+L + W D++N ++ GY +E
Sbjct: 302 GLFKKGYVTNLKTLDKFDDRGPCVVMASPGFMTNGASRELLERWAPDRRNGLLVTGYSIE 361
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+A+ ++ EP+E+T + G P ++V YISFSAH DY Q + F+ ++MP +++LVHGE
Sbjct: 362 GTMAREMLKEPQEITGIKGNKIPRRIEVIYISFSAHVDYTQNAAFIDQVMPTHLVLVHGE 421
Query: 433 SHEMGRLKTKLMTE--LADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETV 490
+ M RL+ L + LA +I TP+N +++ + F + ++A+ IG LA+ VG+T+
Sbjct: 422 FNNMTRLRNALKDKYLLAKNEMQIYTPRNVETLRIKFKASRIARAIGSLADTNLSVGQTI 481
Query: 491 SGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
SGILV K Y +++ DL ++ LST++I Q+++
Sbjct: 482 SGILVSKDSAYTLLSSTDLKDYTGLSTSSIFQKVS 516
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 271/563 (48%), Positives = 376/563 (66%), Gaps = 57/563 (10%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
+ D L LG NEVGRSC + YKGKT++ D GIHPA+ G+A+LPY+DE D S ID+L
Sbjct: 10 DKDHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLL 69
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-------SVED 132
LI+HFHLDHAASLPY +++T F+GRVFMTH TKAIY+ LL D+VKV+ + S D
Sbjct: 70 LISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSND 129
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
L+ ++D+ S D+IE +D+H T+EVNGIKF + AGHVLGAAMF ++IAGVRVL+TGDY
Sbjct: 130 NLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDY 189
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
SRE DRHL +AE+P S D+ I+EST+G H+PR RE++ T +IH+ +S+GGRVL+P
Sbjct: 190 SREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPV 249
Query: 253 FALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
FALGRAQE++LILDEYW NH E +PI+YAS LAKKCM+V+QTY+ MN+ IR +F
Sbjct: 250 FALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKF 309
Query: 310 ANS--NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
+S NPF FK+IS L ++D+F D GPSV++ASPG LQ+GLSR + + WC ++KN ++
Sbjct: 310 KDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
Query: 368 GYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
GY VEGT+AK ++ EP+ + ++ +T P QV I+F+AH D+ + F++ + N
Sbjct: 370 GYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASN 429
Query: 426 IILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
IILVHGES+ MGRLK+ L++ + + + P+NC V++ F K+A+ +G++
Sbjct: 430 IILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVARAVGKII 489
Query: 481 -----------------------EKTPEVGET------------VSGILV--KKGFTYQI 503
E+ PE E+ VSGILV +K F +
Sbjct: 490 EDLDEFITEEDALKNEKRITEIHEEDPETEESKTEIVKEENEKIVSGILVSDEKNFDLSL 549
Query: 504 MAPDDLHI-FSQLSTANITQRIT 525
++ DL + QLST +T+R T
Sbjct: 550 VSLSDLREHYQQLSTTVLTERQT 572
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/473 (53%), Positives = 350/473 (73%), Gaps = 19/473 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE + S +DVLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFNLSKVDVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDMLFDEQDIN 141
AASLPY +++T F+GRVFMTH TKAIY+ LL+D+VKV+ + S ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNGTAASSGDENLYTDEDLA 135
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
S DKIE +DFH T++VNGIKF Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL
Sbjct: 136 ESFDKIETVDFHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLN 195
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
+AE+P DI I+EST+G H+PR +E++ T +IH+T+++GGRVL+P FALGRAQE+
Sbjct: 196 SAEVPSLPSDILIVESTFGTATHEPRVSKERKLTQLIHTTVAKGGRVLLPVFALGRAQEI 255
Query: 262 LLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFK 316
+LILDEYWS H E +PI+YAS LA+KCM+V+QTY+ MN++IR +F +S NPF
Sbjct: 256 MLILDEYWSQHAEELGTGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFI 315
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FK+IS L ++D+F D GPSV++ASPG LQ+GLSR L + WC D+KN +I GY VEGT+A
Sbjct: 316 FKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMA 375
Query: 377 KTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
K +I EP+ + +N +T P QV ISF+AH D+ + F++++ P+IILVHGES+
Sbjct: 376 KFLILEPESIPSINNPDVTIPRRCQVEEISFAAHVDFRENLEFVEKIGAPSIILVHGESN 435
Query: 435 EMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
MGRLK+ L++ + + + P+NC +V++ F K+AK +G + E+
Sbjct: 436 PMGRLKSALLSNFSPLKGTENEVHVYNPRNCVAVDIEFKGVKIAKAVGNIVEE 488
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/489 (52%), Positives = 350/489 (71%), Gaps = 25/489 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKT 483
+ MGRLK+ L++ A D + P+NC V++ F K+AK +G + E+
Sbjct: 434 NPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEEN 493
Query: 484 PEVGETVSG 492
E+ E ++
Sbjct: 494 VEIKEEIAA 502
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 251/471 (53%), Positives = 343/471 (72%), Gaps = 17/471 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + +KGKT++ D GIHPAY G+A+LP++DE D S IDVLLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHVLQFKGKTVMLDTGIHPAYQGLASLPFYDEFDLSKIDVLLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV-----EDMLFDEQDINRS 143
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + ++ L+ ++D+ S
Sbjct: 74 AASLPYVMKRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGTTSSEKDENLYTDEDLADS 133
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
DKIE +D+H T++VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +A
Sbjct: 134 FDKIETIDYHSTMDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREMDRHLNSA 193
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P D+ I+EST+G H+PR REK+ T +IHST+ +GGRVL+P FALGRAQEL+L
Sbjct: 194 EVPPLPSDVLIVESTFGTATHEPRLNREKKLTQLIHSTVGRGGRVLMPVFALGRAQELML 253
Query: 264 ILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFK 318
ILDEYWS H + +PIYYAS LAKKCM+VYQTY+ MN+ IR +F +S NPF FK
Sbjct: 254 ILDEYWSQHADELGSGQVPIYYASNLAKKCMSVYQTYVNMMNDDIRKKFRDSQTNPFIFK 313
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HIS L ++D+F D GPSV++ASPG LQ+GLSR L + WC + KN +I GY VEGT+AK
Sbjct: 314 HISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPEDKNMVLITGYSVEGTMAKY 373
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ EP+ + +N ++ P Q+ ISF+AH D+ + F++++ N+ILVHGES+ M
Sbjct: 374 IMLEPENIPSINNPDVSIPRRCQIEEISFAAHVDFQENIEFIEKISANNVILVHGESNPM 433
Query: 437 GRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
GRLK+ L++ + + + P+NC V++ F K+AK +G + ++
Sbjct: 434 GRLKSALLSNFSSLKGTENEVHVFNPRNCVEVDLEFKGIKVAKAVGNIVDE 484
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/489 (52%), Positives = 350/489 (71%), Gaps = 25/489 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFEGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKT 483
+ MGRLK+ L++ A D + P+NC V++ F K+AK +G + E+
Sbjct: 434 NPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEEN 493
Query: 484 PEVGETVSG 492
E+ E ++
Sbjct: 494 VEIKEEIAA 502
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 268/535 (50%), Positives = 363/535 (67%), Gaps = 26/535 (4%)
Query: 15 APVSREG-----DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
A +S EG D++ + LGAG EVGRSC + YKG+TI+ D G+HPA+SGMAALP+ D
Sbjct: 16 AQISPEGITGLDDEMEVQLLGAGQEVGRSCCVIRYKGRTIVCDAGVHPAFSGMAALPFLD 75
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVS 126
E+D S +D +LITHFHLDHAA L Y +EKT FK G V+M+H TKA+Y+ L++D+V+VS
Sbjct: 76 ELDWSTVDAILITHFHLDHAACLTYVMEKTNFKEGNGVVYMSHPTKAVYRYLMSDFVRVS 135
Query: 127 KVSVEDMLFDEQDINRSMDKIEVLDFHQTV-------EVNGIKFWCYTAGHVLGAAMFMV 179
+D LF E ++ S D+I+ DF Q + ++F + AGHVLGA MF++
Sbjct: 136 TAGSDDNLFTESEMLASFDQIQSFDFEQEILLPPSSTSSASVRFTSFAAGHVLGACMFLI 195
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQFS--PDICIIESTYGVQLHQPRNIREKRFTDV 237
++AG RVLYTGDYS EEDRHL A++P + PD+ I ESTYGVQ H+PR +E +FT++
Sbjct: 196 EVAGARVLYTGDYSTEEDRHLVPAKVPNWERPPDVMICESTYGVQSHEPRLEKEAQFTNL 255
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ S + +GGRVL+P FALGRAQELLLILDEYW+ HPE +IPIYY S LA KCM VY+ Y
Sbjct: 256 VRSILKRGGRVLLPVFALGRAQELLLILDEYWAEHPELQHIPIYYVSSLAIKCMDVYRQY 315
Query: 298 ILSMNERIRNQFANS-NPFKFKH----ISPLN-SIDDFSDVGPSVVMASPGGLQSGLSRQ 351
I +M+ +R++FA NPF FK I PL+ I +D P VVMASPG L SG+SR+
Sbjct: 316 IHTMSPNVRSKFARGINPFDFKRKDSFIRPLDRGISKLNDRNPCVVMASPGFLTSGVSRE 375
Query: 352 LFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMN-GLTAPLNMQVHYISFSAHAD 410
L + W D +N +I GY VEG +A+TI++EP E+ +N G + V YISFSAH D
Sbjct: 376 LLEKWAPDPRNGLIITGYSVEGVMARTIMNEPTEIAALNGGAKIARRLSVDYISFSAHVD 435
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFN 468
Y Q S F+ E+MP ++ILVHGE + M RL+ L T A+ + +I TP+N ++V++ F
Sbjct: 436 YTQNSKFIDEVMPSHLILVHGEVNNMSRLRAALKTRFAERKNDVQIYTPRNVETVKLKFR 495
Query: 469 SEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
E+MAK +G LA+ +SG+LV K F+Y +++P DL F+ LST+ I QR
Sbjct: 496 GERMAKALGSLAQTALTPATPLSGLLVSKDFSYTLLSPADLREFTGLSTSLILQR 550
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/473 (52%), Positives = 350/473 (73%), Gaps = 19/473 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-------VEDMLFDEQDIN 141
AASLPY +++T F+GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLA 135
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
S D+IE +D+H T++VNGIKF Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL
Sbjct: 136 ESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLN 195
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
+AE+P DI I+EST+G H+PR +EK+ T +IH+T+S+GGRVL+P FALGRAQE+
Sbjct: 196 SAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEI 255
Query: 262 LLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFK 316
+LILDEYWS H E +PI+YAS LA+KCM+V+QTY+ MN++IR +F +S NPF
Sbjct: 256 MLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFI 315
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FK+IS L ++D+F D GPSV++ASPG LQ+GLSR L + WC D+KN +I GY VEGT+A
Sbjct: 316 FKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMA 375
Query: 377 KTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
K ++ EP+ + +N ++ P QV ISF+AH D+ + F++++ PNIILVHGES+
Sbjct: 376 KFLMLEPETIPSINNSDVSIPRRCQVEEISFAAHVDFRENLEFVEKIGAPNIILVHGESN 435
Query: 435 EMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
MGRLK+ L++ + + ++ P+NC +V++ F K+AK +G + ++
Sbjct: 436 PMGRLKSALLSNFSSLKGTEDEVRVYNPRNCVAVDLEFKGVKIAKAVGNIVDE 488
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 257/441 (58%), Positives = 318/441 (72%), Gaps = 16/441 (3%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLG+G EVGRSC ++++G T+L DCGIHP Y GMA LP+FD +DP ++DVLL+
Sbjct: 3 DTMQITPLGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDRVDPESVDVLLV 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV---------SKVSVED 132
THFHLDHAASLPYF E+T F+GRVFMTH TKA+ +LLL DY+++ +++ ED
Sbjct: 63 THFHLDHAASLPYFTERTGFRGRVFMTHPTKAVIRLLLGDYLRLMAVKHGSSGGELNPED 122
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVN---GIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
+L+ E ++ +DKIE++D+HQT+++N G+KF AGHVLGAAMF ++I G VLYT
Sbjct: 123 VLYTEAELQSCVDKIELIDYHQTIDLNLPSGLKFHALNAGHVLGAAMFYIEIGGRSVLYT 182
Query: 190 GDYSREEDRHLRAAELPQF--SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
GDYS EEDRHL AAELP++ SPD+ I+ESTYGVQ+H R RE RFT I ++ GGR
Sbjct: 183 GDYSMEEDRHLMAAELPRYHASPDVLIVESTYGVQVHPTRAEREARFTGTIERIVTGGGR 242
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
LIP FALGRAQELLLILDEYW HP ++P+YYAS +A + + VYQTY MN RIR
Sbjct: 243 CLIPVFALGRAQELLLILDEYWQEHPHLQSVPVYYASKMASRALRVYQTYANMMNARIRT 302
Query: 308 QFANSNPFKFKHISPLNSID--DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
Q NPF F+HI L SID +F D GPSVV ASPG LQSG+SRQLFD W +D KN +
Sbjct: 303 QMDLGNPFSFRHIRNLKSIDVNNFDDRGPSVVFASPGMLQSGVSRQLFDRWATDPKNGVL 362
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
I GY VE TLAK I+S+PKEV M G PLN V Y+SFSAH D+ Q F+ + P N
Sbjct: 363 IAGYAVEHTLAKEIMSQPKEVVTMEGRRQPLNCLVDYVSFSAHVDFVQNRDFITNVNPRN 422
Query: 426 IILVHGESHEMGRLKTKLMTE 446
IILVHG EMGRLK LM +
Sbjct: 423 IILVHGAKEEMGRLKGALMMQ 443
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/473 (52%), Positives = 350/473 (73%), Gaps = 19/473 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-------VEDMLFDEQDIN 141
AASLPY +++T F+GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDSAGGVSDENLYTDEDLA 135
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
S D+IE +D+H T++VNGIKF Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL
Sbjct: 136 ESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLN 195
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
+AE+P DI I+EST+G H+PR +EK+ T +IH+T+S+GGRVL+P FALGRAQE+
Sbjct: 196 SAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEI 255
Query: 262 LLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFK 316
+LILDEYWS H E +PI+YAS LA+KCM+V+QTY+ MN++IR +F +S NPF
Sbjct: 256 MLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFI 315
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FK+IS L ++D+F D GPSV++ASPG LQ+GLSR L + WC D+KN +I GY VEGT+A
Sbjct: 316 FKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMA 375
Query: 377 KTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
K ++ EP+ + +N ++ P QV ISF+AH D+ + F++++ PNIILVHGES+
Sbjct: 376 KFLMLEPETIPSINNSDVSIPRRCQVEEISFAAHVDFRENLEFVEKIGAPNIILVHGESN 435
Query: 435 EMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
MGRLK+ L++ + + ++ P+NC +V++ F K+AK +G + ++
Sbjct: 436 PMGRLKSALLSNFSSLKGTEDEVRVYNPRNCVAVDLEFKGVKIAKAVGNIVDE 488
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/489 (51%), Positives = 350/489 (71%), Gaps = 25/489 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F+G+VFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGKVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKT 483
+ MGRLK+ L++ A D + P+NC V++ F K+AK +G + E+
Sbjct: 434 NPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEEN 493
Query: 484 PEVGETVSG 492
E+ E ++
Sbjct: 494 VEIKEEIAA 502
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 261/508 (51%), Positives = 355/508 (69%), Gaps = 16/508 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
L IT LGAG EVGRSC + Y+G+TI+ D GIHPA++GMA+LP+ D++D S +D +LIT
Sbjct: 6 NLKITMLGAGQEVGRSCCVLQYRGRTIVCDTGIHPAHTGMASLPFIDDLDWSTVDAILIT 65
Query: 83 HFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HFHLDHAASL Y EKT F KG+++MTH TKA++K ++ D+V+ S D LF D
Sbjct: 66 HFHLDHAASLTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDFVRTGSSS-SDALFSPLD 124
Query: 140 INRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I+ S+ I + HQ + G+ F Y AGHVLGA MF++D+AG+R+LYTGDYSREEDR
Sbjct: 125 ISMSLASIIPVSAHQLITPCPGVSFTPYHAGHVLGACMFLIDMAGLRILYTGDYSREEDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AELP PD+ I+ESTYGVQ H+PR+ +E RFT+++HS I +GG VL+P FALGRA
Sbjct: 185 HLVKAELPPIRPDVLIVESTYGVQSHEPRDEKELRFTNLVHSIIRRGGHVLLPQFALGRA 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKF 317
QELLLILDEYW HP+ HN+PIYYAS LA+K MAVYQTYI +MN IR++FA NPF F
Sbjct: 245 QELLLILDEYWKKHPDLHNVPIYYASGLARKSMAVYQTYIHTMNSNIRSRFAKRDNPFVF 304
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
K ++ P VV+A+PG +Q+G SR+LF++W D +N ++ GY VEGTLA+
Sbjct: 305 KC--------KIAEGPPCVVLATPGFMQTGSSRELFELWAPDSRNGLIVTGYSVEGTLAR 356
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I++EP+E + G + V YISFSAH DY Q + F++ + +++LVHGE MG
Sbjct: 357 DIMTEPEEFQSVKGHMIQRKISVDYISFSAHVDYTQNAEFIETVRAQHVVLVHGEQTAMG 416
Query: 438 RLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
RL+ + + D + KI TP+N +++E+ F E++AK IG LA+K P+ + +SG+LV
Sbjct: 417 RLRAAMSSRYKERDEDVKIHTPRNLETLELSFRGERVAKAIGTLADKPPQSSDVLSGLLV 476
Query: 496 KKGFTYQIMAPDDLHIFSQLSTANITQR 523
K ++Y ++ P DL F+ LST +TQR
Sbjct: 477 AKDYSYTLLDPRDLKDFAGLSTCVVTQR 504
>gi|255718827|ref|XP_002555694.1| KLTH0G15202p [Lachancea thermotolerans]
gi|238937078|emb|CAR25257.1| KLTH0G15202p [Lachancea thermotolerans CBS 6340]
Length = 755
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/483 (52%), Positives = 352/483 (72%), Gaps = 21/483 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S +DVLLI+HFHLDH
Sbjct: 18 LGGGNEVGRSCHILQYKGKTVMLDAGVHPAHQGLASLPFYDEFDLSTVDVLLISHFHLDH 77
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINR 142
AASLPY +++T F+GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 78 AASLPYVMQRTNFRGRVFMTHPTKAIYRWLLSDFVKVTSIGSTSFSDKDENLYTDEDLAE 137
Query: 143 SMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
S D+IE +DFH T++VNGIKF + AGHVLGAAMF V+IAG+++L+TGDYSRE DRHL +
Sbjct: 138 SFDRIETIDFHSTIDVNGIKFVAFHAGHVLGAAMFQVEIAGLKILFTGDYSRETDRHLNS 197
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
AE+P S D+ I+EST+G H+PR REK+ T +IHST+ +GGRVL+P FALGRAQE++
Sbjct: 198 AEVPPSSSDVLIVESTFGTATHEPRINREKKLTQLIHSTVMRGGRVLLPVFALGRAQEIM 257
Query: 263 LILDEYWSNHP-EFHN--IPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKF 317
LILDEYWS H E N +P++YAS LAKKCM+V+QTY+ MN+ IR +F + SNPF F
Sbjct: 258 LILDEYWSQHADELGNGQVPVFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQSNPFIF 317
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
K+IS L ++D+F D GPSV++ASPG LQ+GLSR L + WC +KN +I GY VEGT+AK
Sbjct: 318 KNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPGEKNLVLITGYSVEGTMAK 377
Query: 378 TIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I+ EP + +N + P Q+ ISF+AH D+ + F++++ NIILVHGES+
Sbjct: 378 FIMLEPDTIPSINNPEINIPRRCQIEEISFAAHVDFRENLEFIEKVGARNIILVHGESNP 437
Query: 436 MGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETV 490
MGRLK+ L++ + + ++ P+NC SV++ F K+AK IG + + EV T+
Sbjct: 438 MGRLKSALLSNFSALKNTEDEVRVFNPRNCISVDLEFKGVKVAKAIGNIVD---EVSSTL 494
Query: 491 SGI 493
G+
Sbjct: 495 HGL 497
>gi|440795785|gb|ELR16901.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 589
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 245/391 (62%), Positives = 299/391 (76%)
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
ML+DEQD+ +MDKIE +++HQ +E NGIKFWCY AGHVLGAAMFM++IAGVR+LYTGD+
Sbjct: 1 MLYDEQDLINTMDKIEPINYHQQIEANGIKFWCYNAGHVLGAAMFMIEIAGVRILYTGDF 60
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
SR+EDRHL AAE P ++ DI I+ESTYGVQ+H+PR RE RFT ++H+ + +GGR L+P
Sbjct: 61 SRQEDRHLMAAETPAYTADIVIVESTYGVQIHEPRIERETRFTKLVHTIVRRGGRCLLPV 120
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
FALGRAQELLLILDEYW HPE H +PIYYAS LAKKCM VYQTYI MNE IR QFA S
Sbjct: 121 FALGRAQELLLILDEYWEAHPELHKVPIYYASSLAKKCMTVYQTYINMMNENIRKQFAVS 180
Query: 313 NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
NPF FKHIS L + F D GP VVMASPG LQSGLSR+LF+ WCS+ KN +IPGY VE
Sbjct: 181 NPFVFKHISNLKGMQHFDDSGPCVVMASPGMLQSGLSRELFEKWCSNAKNGVIIPGYCVE 240
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GTLAK I+SEP EVT M+G PL VHYISFSAH+D+ QT+ FL + PP ++LVHG+
Sbjct: 241 GTLAKHIMSEPSEVTAMDGRMLPLKASVHYISFSAHSDFLQTAGFLDIIQPPYVVLVHGD 300
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
++EM RLK L+ N +I+TPKNCQ+V++ F EK AK +G LA + G+ VSG
Sbjct: 301 ANEMSRLKASLVNRYEGRNIQILTPKNCQTVQLKFRGEKTAKVLGTLAGEGAAPGKVVSG 360
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
I+V+K F Y IMAP D H ++QL T I Q+
Sbjct: 361 IVVRKDFNYHIMAPSDAHTYAQLVTTQIVQK 391
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 260/490 (53%), Positives = 333/490 (67%), Gaps = 47/490 (9%)
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDM-LFDEQDI 140
+FHLDH LPY L KT + + +MTHATKAIY+ LL D+V+VS S V D L+ ++DI
Sbjct: 13 NFHLDHCGGLPYLLLKTGVRAKCYMTHATKAIYRYLLADFVRVSNSSGVPDQSLYTDRDI 72
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S+D+I+ LDFHQ +EVNGIKF + AGHVLGAAMF+++IAGV+VLYTGD+SR+EDRHL
Sbjct: 73 IASLDRIDTLDFHQELEVNGIKFTAFHAGHVLGAAMFLIEIAGVKVLYTGDFSRQEDRHL 132
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AE+P PD+ I E+TYG+ +H R RE RFT ++H + +GGR LIPAFALGRAQE
Sbjct: 133 MCAEIPHVRPDVLITEATYGIHIHDKREDREARFTRLVHDIVGRGGRCLIPAFALGRAQE 192
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
L+LILDEYW+NHPE H+IPIYYAS LA+KCMAVYQTYI +MNE+IRNQ AN+NPF F+HI
Sbjct: 193 LMLILDEYWANHPELHDIPIYYASQLARKCMAVYQTYIHAMNEKIRNQLANNNPFCFRHI 252
Query: 321 SPL------------------------------------------NSIDDFSDVGPSVVM 338
S L SI+ F D GP VVM
Sbjct: 253 SNLKAMRSYSISEQTEHALASKAWLYVAYSRFPVIGTVAAGTNVPTSIEHFDDSGPCVVM 312
Query: 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNM 398
ASPG +QSG+SR+LF+ WC+D++N +I GY VEGTLAK I+S P E+ M+G T PL
Sbjct: 313 ASPGMMQSGMSRELFENWCTDRRNGVIIAGYCVEGTLAKQILSLPAEIPTMSGQTLPLKC 372
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKII 455
V YISFSAH DY QTS F++EL P +ILVHGE +EM RL L E D C ++
Sbjct: 373 SVDYISFSAHTDYQQTSAFIRELKPNYVILVHGEQNEMLRLAGALQREYEDDDTCCLELF 432
Query: 456 TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQL 515
TPKNC V + F EK+AK +G LA P+ +++SG+LVKK F Y I+ P++L +++L
Sbjct: 433 TPKNCVPVNLRFRGEKVAKVLGSLARNPPKNNQSISGVLVKKNFAYHILTPEELPTYTEL 492
Query: 516 STANITQRIT 525
+T + Q I+
Sbjct: 493 ATTTVNQLIS 502
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 240/432 (55%), Positives = 323/432 (74%), Gaps = 4/432 (0%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P + + D L I PLGAG+EVGRSC+ + +K KTILFDCG+HPAYSG+AALP+FDEIDPS
Sbjct: 2 PPATDDDTLSIIPLGAGSEVGRSCIVLKFKKKTILFDCGVHPAYSGLAALPFFDEIDPSE 61
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF--KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
IDV+LITHFHLDH A LPY + +T + R+ MTH TKA+Y+ L+ D+V+V +
Sbjct: 62 IDVILITHFHLDHCAGLPYLVTQTNLNPRARILMTHPTKAVYRSLIGDFVRVGSSDYAGI 121
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
++ E D+N++M +IE +D+HQ ++V+G++ Y AGHVLGAAMF+V++AGV VLYTGD+S
Sbjct: 122 IYTESDLNQTMARIECIDYHQHIDVSGVRISAYNAGHVLGAAMFLVEVAGVSVLYTGDFS 181
Query: 194 REEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R+EDRHL AE+P+ D+ I ESTYGVQ+H+PR +RE RFT + + +GGR L+P
Sbjct: 182 RQEDRHLMEAEIPRGIHIDVLICESTYGVQVHEPRRVREARFTQRVAEVVKRGGRCLLPV 241
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN- 311
FALGRAQELLLIL+EYW HPE IPIYY+S +AK+CMA+Y TYI MN+ I+ ++
Sbjct: 242 FALGRAQELLLILEEYWDAHPELQEIPIYYSSSIAKRCMAIYSTYIHQMNQNIQQRYRRF 301
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF FK++ + S+D+F D GP V MASPG LQSG+SR+LF+ WCSD++N ++PGY V
Sbjct: 302 GNPFAFKYVMNIRSLDEFEDSGPCVFMASPGMLQSGMSRRLFEKWCSDRRNGVILPGYSV 361
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+GTLAK I+++P V ++G PL V YI+FSAH+D+ QTS F+++ P N++LVHG
Sbjct: 362 QGTLAKYILTDPATVPRLDGQHVPLRCSVDYITFSAHSDFMQTSEFIEQCRPSNLVLVHG 421
Query: 432 ESHEMGRLKTKL 443
E EM RL L
Sbjct: 422 EKSEMQRLAQAL 433
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/472 (52%), Positives = 341/472 (72%), Gaps = 18/472 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGKTI+ D G+HPAY GMA+LP++D+ D S +D+LLI+HFHLDH
Sbjct: 14 LGGGNEVGRSCHIIQYKGKTIMLDAGVHPAYQGMASLPFYDDFDLSTVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINR 142
AASLPY +++T FKGRVFMTH TKAIY+ LL D+V+V+ + V E+ L+ ++D+
Sbjct: 74 AASLPYVMQRTPFKGRVFMTHPTKAIYRWLLRDFVRVTAIGVDSTLAAEESLYTDEDLAE 133
Query: 143 SMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
S DKIE +D+H TVEVNGIKF Y AGHVLGAAMF ++IAG+++L+TGDYSRE DRHL +
Sbjct: 134 SFDKIETIDYHSTVEVNGIKFTAYHAGHVLGAAMFQIEIAGLKILFTGDYSREMDRHLNS 193
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
AE+P S DI ++EST+G H+PR RE + T +IH+T+ +GGRVL+P FALGRAQEL+
Sbjct: 194 AEVPPQSSDILVVESTFGTATHEPRLHRENKLTQLIHTTVGRGGRVLMPVFALGRAQELM 253
Query: 263 LILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKF 317
LILDEYW H + +PI+YAS LA+KCM+V+QTY+ MN+ IR +F +S NPF F
Sbjct: 254 LILDEYWQKHSDELGSGQVPIFYASDLARKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIF 313
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
K+IS L ++++F D GPSV++ASPG LQSGLSR L + WC ++KN +I GY VEGT+AK
Sbjct: 314 KNISYLKNLEEFQDFGPSVMLASPGMLQSGLSRDLLEKWCPEQKNLVLITGYSVEGTMAK 373
Query: 378 TIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I+ EP + + + P QV ISF+AH D+ + F++++ NIILVHGES+
Sbjct: 374 YIMLEPDTIPAIGNPEINIPRRCQVEEISFAAHVDFQENLEFIEKINAQNIILVHGESNP 433
Query: 436 MGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
MGRLK+ L++ + D + P+NC V + + K+AK +G + ++
Sbjct: 434 MGRLKSALLSNFSSTKGTDNEVHVYNPRNCVEVALEYKGIKVAKAVGNIVDE 485
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/474 (53%), Positives = 342/474 (72%), Gaps = 20/474 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S ID+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHVLQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKIDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV--------EDMLFDEQDI 140
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGGKDESLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR REK+ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNREKKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHTDELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTEL-----ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+ MGRLK+ L++ + + P+NC V++ F K+AK +G + +
Sbjct: 434 NPMGRLKSALLSNFVSLKGTESEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNE 487
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 258/511 (50%), Positives = 357/511 (69%), Gaps = 12/511 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L IT LGAG EVGRSC + Y+G+TI+ D G+HPAYSG+A+LP+ DE+D S +DV+LITH
Sbjct: 8 LNITLLGAGQEVGRSCCVLQYRGRTIVCDTGVHPAYSGIASLPFIDELDWSTVDVILITH 67
Query: 84 FHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDHAA+L Y EKT F KG+++MTH TKA++K ++ D+V++ S D LF ++
Sbjct: 68 FHLDHAAALTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDFVRMGSSS-SDALFSPMEL 126
Query: 141 NRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREEDRH
Sbjct: 127 SVSLASIIPVSAHQVISPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREEDRH 186
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AE+P PD+ I+EST+GVQ + R +E RFT+++H+ I +GG VL+P FALGRAQ
Sbjct: 187 LVKAEVPPIRPDVLIVESTFGVQTLEGREEKELRFTNLVHNIIRRGGHVLLPTFALGRAQ 246
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFK 318
ELLLILDEYW HP+ HN+P+YYAS LA+KCMAVYQTYI +MN +R++FA NPF FK
Sbjct: 247 ELLLILDEYWKKHPDLHNVPVYYASSLARKCMAVYQTYIHTMNSNVRSRFAKRDNPFVFK 306
Query: 319 HISPLNSIDDFSDV---GPS-VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
HIS + + GPS VV+ASPG ++SG SR+L ++W D +N ++ GY +EGT
Sbjct: 307 HISNVPHSRGWERKIAEGPSCVVLASPGFMESGPSRELLELWAPDSRNGVILTGYSIEGT 366
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+A+ I +EP E+ + G T P + + ISF AH DY+Q S F++ + +I+LVHGE +
Sbjct: 367 MARDIQTEPDEIPSVKGHTIPRKLSIDEISFGAHVDYSQNSEFIELIHAQHIVLVHGEQN 426
Query: 435 EMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
MGRL+ L D + KI TP+N + +++ F E++AK IG LA K P+ E +SG
Sbjct: 427 AMGRLRAALQDRYKNRDEDVKIHTPRNLEPLQLTFRGERVAKAIGTLAAKPPQPNEVISG 486
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LV K ++Y ++ P DL F+ L+T +TQR
Sbjct: 487 LLVSKDYSYTLLDPRDLRDFAGLTTTAVTQR 517
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/478 (52%), Positives = 345/478 (72%), Gaps = 18/478 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRS + YK KT++ D G+HPAY G A+LPY+DE D S +D+LLI+HFH+DH
Sbjct: 15 LGGSNEVGRSSHMLQYKNKTVMLDAGVHPAYQGYASLPYYDEFDLSKVDILLISHFHVDH 74
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-----VEDMLFDEQDINRS 143
AASLPY ++KT F+GRVFMTH TKAIY+ LL D+V+V+ + ++ L+ ++D+ S
Sbjct: 75 AASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGNSATGKDENLYTDEDLAES 134
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+IE +D+H TV+V GIKF Y AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +A
Sbjct: 135 FDRIETIDYHSTVDVGGIKFTAYHAGHVLGAAMFQIEIAGLRVLFTGDYSRELDRHLNSA 194
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P F D+ I+EST+G H+PR RE++ T +IHST+++GGRVL+P FALGRAQEL+L
Sbjct: 195 EIPPFPSDVLIVESTFGTATHEPRINRERKLTQLIHSTVTKGGRVLLPVFALGRAQELML 254
Query: 264 ILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFK 318
ILDEYWS H E +PIYYAS LA+KCM+V+QTY+ MN+ IR +F +S NPF FK
Sbjct: 255 ILDEYWSQHAEELGGGQVPIYYASNLARKCMSVFQTYVNMMNDDIRRKFRDSQTNPFVFK 314
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+IS L +ID+F D GPSV++ASPG LQ+GLSR++ + WC + KN +I GY VEGT+AK
Sbjct: 315 NISYLKNIDEFQDFGPSVMLASPGMLQNGLSREVLERWCPEGKNLVLITGYSVEGTMAKF 374
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++ EP + +N +T P Q+ ISF+AH D+ + F++++ PNI+LVHGES+ M
Sbjct: 375 LMLEPDTIPSINNPEITIPRRCQIEEISFAAHVDFQENLEFIEKISAPNIVLVHGESNPM 434
Query: 437 GRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
GRLK+ L++ A D + P+NC V + F K+AK +G + ++ + GET
Sbjct: 435 GRLKSALLSNFASLKGTDQEVHVYNPRNCVEVNLEFKGIKVAKAVGNIVDEIQK-GET 491
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 254/482 (52%), Positives = 343/482 (71%), Gaps = 18/482 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDKI 147
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V LF ++D+ S DKI
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVXXXXXXXXXXGLFSDEDLVDSFDKI 133
Query: 148 EVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ 207
E +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P
Sbjct: 134 ETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPP 193
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE++LILDE
Sbjct: 194 LSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDE 253
Query: 268 YWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISP 322
YWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK+IS
Sbjct: 254 YWSRHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISY 313
Query: 323 LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISE 382
L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+AK I+ E
Sbjct: 314 LRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLE 373
Query: 383 PKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
P + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE++ MGRLK
Sbjct: 374 PDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLK 433
Query: 441 TKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKTPEVGETV 490
+ L++ A D + P+NC V++ F K+AK +G + E+ E+ E +
Sbjct: 434 SALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEENVEIKEEI 493
Query: 491 SG 492
+
Sbjct: 494 AA 495
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/511 (49%), Positives = 357/511 (69%), Gaps = 12/511 (2%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L +T LGAG EVGRSC + Y+GKT++ D G HPA++GM+ALP+ D++D S +D +L+TH
Sbjct: 7 LSVTMLGAGQEVGRSCCVIQYRGKTVVCDAGTHPAHNGMSALPFIDDLDWSTVDAILVTH 66
Query: 84 FHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FH+DHAASL Y +EKT F KG+V+MTH TK +Y+ L+ D++++S S D LF ++
Sbjct: 67 FHIDHAASLTYIMEKTNFRDGKGKVYMTHPTKGVYRFLMQDFMRISSTST-DGLFTSVEL 125
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ S+ I + HQ + V+ G+ F Y AGHVLGA MF++DIAG+R+LYTGDYSREEDRH
Sbjct: 126 SMSLASIMTVSAHQLITVSPGLSFTPYHAGHVLGACMFLIDIAGLRILYTGDYSREEDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AE+P PD+ I+ESTYGVQ H+ R+ +E RFT+++HS I +GG L+P FALGRAQ
Sbjct: 186 LVKAEIPPVRPDVLIVESTYGVQGHEERDTKEHRFTNLVHSIIRRGGHALLPVFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFK 318
ELLLIL++YW HP+ HN+PIYYAS LA+KCMAVYQTYI +MN IR++FA NPF FK
Sbjct: 246 ELLLILEDYWKKHPDLHNVPIYYASNLARKCMAVYQTYIHTMNSNIRSRFAKRDNPFVFK 305
Query: 319 HISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
H+S + + + ++ P V++ +PG LQ G SR+L ++W D +N +I GY VEGT
Sbjct: 306 HVSNIPQVRGWEKRIAEGPPCVILCTPGMLQPGPSRELLELWAPDPRNGLIITGYSVEGT 365
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
LA+ I++EP+E+ + G + P + V YISFSAH D Q F++++ +I+LVHG++
Sbjct: 366 LARDIVNEPQEIPSVKGDSIPRRLSVDYISFSAHVDGPQNIEFIEQVKAQHIVLVHGDAA 425
Query: 435 EMGRLKTKLMTELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
M RL+ L D KI TP+N +++++ F E++AK IG LA P+ +SG
Sbjct: 426 AMNRLRVSLQQRYKDREEEIKIHTPRNLETLKLTFRGERVAKAIGTLASNPPKPNSVLSG 485
Query: 493 ILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+LV K ++Y ++ P DL F+ LST +TQR
Sbjct: 486 LLVSKDYSYTLLDPRDLRDFAGLSTCIVTQR 516
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/522 (49%), Positives = 353/522 (67%), Gaps = 28/522 (5%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQ LG GNEVGRS + +KGKT++ D G+HPA+ GMA+LP++DE D +DVLLI
Sbjct: 14 DQFRFFCLGGGNEVGRSSHIIQFKGKTVMLDAGVHPAFQGMASLPFYDEFDLGTVDVLLI 73
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE-DMLFDEQDI 140
+HFHLDHAASLPY ++KT FKGRVFMTH TKAIY+ LL D+V+V+ + + + L+ ++D+
Sbjct: 74 SHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLNDFVRVTAIDDDSNQLYSDKDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S D+IE +DFH T+E++GI+F Y AGHVLGAAMF ++IAG++VL+TGD+SREEDRHL
Sbjct: 134 KDSFDRIETIDFHSTIEIDGIRFTAYQAGHVLGAAMFFIEIAGIKVLFTGDFSREEDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AE+P PD+ I EST+G H+PR +EK+ T +IHST++ GGRVL+P FALGRAQE
Sbjct: 194 SVAEVPPVRPDVLITESTFGTATHEPREEKEKKLTTMIHSTLANGGRVLMPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
LLLILDEYWS H + NI +YYAS LA+KC+AVYQTYI MNE IR +F N NPF+F+
Sbjct: 254 LLLILDEYWSQHQDLENIKVYYASDLARKCLAVYQTYINMMNENIRKKFRDTNKNPFQFQ 313
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+I + ++ F D PSVV+ASPG LQ+G+SR L + W D +N ++
Sbjct: 314 YIKNIKNLSKFDDFQPSVVVASPGMLQNGVSRALLEKWAPDPRNTLIM----------TE 363
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ EP E+ + P M V ISF+AH DY Q S F++ + P I+LVHGES+ M
Sbjct: 364 ILLEPTEIPSQQNPDVLIPRRMTVEEISFAAHVDYEQNSKFIELVNPKTIVLVHGESNPM 423
Query: 437 GRLKTKLMTELADC-NT----KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV----- 486
GRLK+ L+++ + NT K+ P+NC+ + + F K+AK +G + E +V
Sbjct: 424 GRLKSALLSKYSKYKNTPDEVKVYNPRNCEDLLVEFKGIKIAKAMGTITEDVNKVLKQDV 483
Query: 487 ---GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
++G+LV+K F ++ DL ++ L+T I QR T
Sbjct: 484 KSAKSEINGVLVQKNFDLSLLKIQDLREYTGLTTTMIKQRQT 525
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 258/557 (46%), Positives = 362/557 (64%), Gaps = 60/557 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HP Y+G+++LP++DE D S +D+LLI+HFHLDH
Sbjct: 13 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGYAGLSSLPFYDEYDLSKVDILLISHFHLDH 72
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------------SVEDML 134
AASLPY ++ T F GRVFMTHATKAIY+ LL+D+V+V+ + + L
Sbjct: 73 AASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVRVTSIGGGGDSRLNSGNETATSSNL 132
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ + D+ RS D+IE +D+H T+EV GI+F Y AGHVLGA M+ V+I G++VL+TGDYSR
Sbjct: 133 YTDDDLIRSFDRIETIDYHSTIEVEGIRFTAYHAGHVLGACMYFVEIGGLKVLFTGDYSR 192
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
EEDRHL+ AE+P PDI I EST+G H+PR +E R T +IHST+ +GGR+L+P FA
Sbjct: 193 EEDRHLQVAEVPPMRPDILITESTFGTATHEPRLEKEARMTKIIHSTLLKGGRILMPVFA 252
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--- 311
LGRAQELLLIL+EYWS + + HNI +++AS LA+KCMAVYQTY MN+ IR+ ++
Sbjct: 253 LGRAQELLLILEEYWSQNEDLHNINVFFASSLARKCMAVYQTYTNIMNDNIRHGVSSASG 312
Query: 312 --SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
SNPF+FKHI + S+D F D+GP VV+A+PG LQ+G+SR+L + W D KNA ++ GY
Sbjct: 313 GKSNPFQFKHIKLIRSLDKFQDIGPCVVVAAPGMLQNGVSRELLERWAPDAKNAVIMTGY 372
Query: 370 VVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
VEGT+AK +++EP + +T P M + ISF+AH D+ + + F+ + P II
Sbjct: 373 SVEGTMAKELLTEPHTIQSSQNADVTIPRRMAIEEISFAAHVDFQENAGFIDMINPSKII 432
Query: 428 LVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
LVHGES+ MGRLK+ L+++ + + K+ P+NC + + K+AK +G LAE+
Sbjct: 433 LVHGESNPMGRLKSALLSKYSSRKGTEQEVKVFNPRNCDELSIGIRGLKIAKVLGNLAEE 492
Query: 483 -------------------------------TPE---VGETVSGILVKKGFTYQIMAPDD 508
T E G T++G+LV K F + D
Sbjct: 493 ELAKLQKDISKKLKEDESKMDETTDGEVNGDTSEPIKTGHTIAGVLVSKDFDLSFLQMQD 552
Query: 509 LHIFSQLSTANITQRIT 525
LH ++QLST+ + +I+
Sbjct: 553 LHEYTQLSTSILKSKIS 569
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 254/488 (52%), Positives = 348/488 (71%), Gaps = 25/488 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++D+ D S ID+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDDFDLSKIDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV--------EDMLFDEQDI 140
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGGKDESLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNSEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTEL-----ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKT 483
+ MGRLK+ L++ + + P+NC V++ F K+AK +G + E+
Sbjct: 434 NPMGRLKSALLSNFVSLKGTENEVHVFNPRNCVEVDLEFQGIKVAKAVGNIVNEVYKEEG 493
Query: 484 PEVGETVS 491
EV + +S
Sbjct: 494 REVKKEIS 501
>gi|308807807|ref|XP_003081214.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
gi|116059676|emb|CAL55383.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
Length = 572
Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/514 (49%), Positives = 355/514 (69%), Gaps = 23/514 (4%)
Query: 13 RDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
RDA EG+ L I PLGAG+EVGRSCV +++GKT++FDCGIHP +SG+A+LPY D++D
Sbjct: 9 RDA----EGEMLEIIPLGAGSEVGRSCVVATFRGKTLMFDCGIHPGFSGIASLPYLDDVD 64
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV-E 131
SA+D LL+THFHLDH A++P+ + +T F+GR+FMTH TKAIY +L+ D+V++ K E
Sbjct: 65 LSAVDALLVTHFHLDHCAAVPFLVGRTDFRGRIFMTHPTKAIYHMLMQDFVRLMKQGGGE 124
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
+ LF + D+ SM +IEV+DFHQ ++V+G+K Y AGHVLGA MF VDI G+RVLYTGD
Sbjct: 125 EPLFTDADLEASMKRIEVVDFHQEIDVDGVKVTPYRAGHVLGACMFNVDIGGLRVLYTGD 184
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSR DRHL AA++P P + I+ESTYGV H PR RE R
Sbjct: 185 YSRIADRHLPAADIPAIPPHVVIVESTYGVSPHSPREEREIRXX---------------- 228
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
RAQELLLIL+++W+ +P+ +PIY AS LA+K M +YQTYI +N ++ F
Sbjct: 229 XXXXXRAQELLLILEDFWAQNPDLQRVPIYQASTLARKAMTIYQTYINVLNADMKAAFEE 288
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+NPF F H+ ++ + DVGP VV+A+P LQSGLSR+LF+ WC + KN +I + V
Sbjct: 289 ANPFVFNHVKHISKASELDDVGPCVVLATPSMLQSGLSRELFESWCEEPKNGVIIADFAV 348
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+GTLA+ I+S+ +VT +G LNM V ISFSAHADY QT FL L PP+++LVHG
Sbjct: 349 QGTLAREILSDVNKVTARDGQELQLNMSVDAISFSAHADYPQTQAFLDTLAPPHVVLVHG 408
Query: 432 ESHEMGRLKTKLMTELADCNTK--IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
E+ EMGRLK L + A + + + TPKNCQ+V++ E++AK G +AE+ E G+
Sbjct: 409 EAGEMGRLKRALDAKAAADDKQMSVYTPKNCQAVQIIHKGERIAKLTGLIAEREVEEGDV 468
Query: 490 VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
V+G+LV+K F + ++AP+D++ +++L T+ +TQR
Sbjct: 469 VAGVLVEKDFGHMLIAPEDVNNYTKLRTSTLTQR 502
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 243/422 (57%), Positives = 305/422 (72%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
++++I PLGAGNEVGRSC+++ YK + IL DCG+HPAY+G+++LP+ D +D S ID +L+
Sbjct: 5 EKVVIKPLGAGNEVGRSCIHLKYKNREILLDCGVHPAYTGVSSLPFLDLVDLSKIDAILV 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT FKG+V+MTH TKAI K LL DY++V S E + EQD+
Sbjct: 65 THFHLDHAAALPFLTEKTEFKGKVYMTHPTKAILKWLLNDYIRVINSSSEQDFYTEQDLQ 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
DKI +D+HQ + + GIK AGHVLGAAMF+++I ++LYTGD+SREEDRHL+
Sbjct: 125 SCYDKIIPIDYHQQINIEGIKVTALNAGHVLGAAMFLLEIEKSKILYTGDFSREEDRHLK 184
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P D I ESTYGVQ H PR RE RFT ++ + +GGR L+P FALGRAQEL
Sbjct: 185 AAESPGCCLDALITESTYGVQCHLPRYEREARFTSIVSHVVLRGGRCLLPVFALGRAQEL 244
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+E+W +P IPIYYAS LA+KCM+VYQTYI MNERI+ NPF F+++
Sbjct: 245 LLILEEHWDENPHLKGIPIYYASALAQKCMSVYQTYINMMNERIQKASLVKNPFDFRNVE 304
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ I F D GP V+MASPG LQSG SR+LF+ WCS++KN VIPGY VEGTLAK I+S
Sbjct: 305 SIKDIQSFKDTGPCVMMASPGMLQSGFSRELFEKWCSNEKNGVVIPGYCVEGTLAKEILS 364
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKEV M G LNM V YISFSAH DY Q F+ E P N+ VHGE++EM RLK
Sbjct: 365 EPKEVESMKGGLLKLNMSVEYISFSAHVDYTQNIQFIDECQPKNLFFVHGEANEMMRLKN 424
Query: 442 KL 443
+
Sbjct: 425 SV 426
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/533 (48%), Positives = 355/533 (66%), Gaps = 29/533 (5%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
E D L LG GNEVGRSC + YKGKT++ D G+HPAY G+A LP++D+ D S +DVL
Sbjct: 18 ESDHLTFLCLGGGNEVGRSCHILKYKGKTVMLDAGVHPAYEGLAGLPFYDQFDLSTVDVL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-SVEDMLFDEQ 138
LI+HFHLDHAASLPY + KT F+GRVFMTH TKAIYK L+ D V+V V + D L+ E
Sbjct: 78 LISHFHLDHAASLPYVMTKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNVHNSPDNLYTES 137
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D S +IE +D+H T+ GI Y AGHVLG AMF ++IAG+++L+TGDYSRE+DR
Sbjct: 138 DHLSSYSRIEAIDYHTTLTHAGISITPYHAGHVLGGAMFFIEIAGLKILFTGDYSREDDR 197
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL +AE+P PD+ I ESTYG H PR +E R + +++GGRVL+P FALGRA
Sbjct: 198 HLVSAEVPHQKPDLLICESTYGTATHMPRLEKEARLMKMTTEILNRGGRVLMPVFALGRA 257
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN---QFANSNPF 315
QELLLILDEYW HP + + PIYYAS LA+KCM VY+TYI +MN++I+ + NP+
Sbjct: 258 QELLLILDEYWEKHPAYQSYPIYYASNLARKCMDVYRTYINTMNDKIKRAMFEGEGRNPW 317
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
F+ + L +ID F DVG V++ASPG LQ+G+SR+L + WC D +N VI GY VEGT+
Sbjct: 318 DFRWVRSLKTIDRFEDVGGCVMLASPGMLQNGVSRELLERWCPDPRNGLVITGYSVEGTM 377
Query: 376 AKTIISEPKEVTLM-----NGLTA----------PLNMQVHYISFSAHADYAQTSTFLKE 420
AK I++EP E+ + +G TA P V +SF+AH DYAQ S F++E
Sbjct: 378 AKQIMNEPTEIPAVVTANRSGSTASRGVDGQVMVPRRCSVEELSFAAHVDYAQNSGFIEE 437
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADC----NTKIITPKNCQSVEMYFNSEKMAKTI 476
+ +ILVHGE + MGRLK+ L+++ +D KI PKNC+ + + F ++K+AK +
Sbjct: 438 VGAKVVILVHGEQNNMGRLKSALLSKNSDRRDKDKVKIYNPKNCEELRIPFKADKIAKVV 497
Query: 477 GRLAEKTPEVG------ETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
G+LA+K P + ++G+LV+ F +M PDDL ++ L+T ++ R
Sbjct: 498 GKLAQKPPGTQTLALKEQLLTGVLVQNDFKLSLMTPDDLREYAGLTTTVVSCR 550
>gi|149641381|ref|XP_001505542.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Ornithorhynchus anatinus]
Length = 595
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/412 (59%), Positives = 313/412 (75%), Gaps = 4/412 (0%)
Query: 115 YKLLLTDYV-KVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLG 173
+ LLL ++ + S +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLG
Sbjct: 13 FLLLLCVFIFQSSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLG 72
Query: 174 AAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233
AAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE R
Sbjct: 73 AAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREAR 132
Query: 234 FTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAV 293
F + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAV
Sbjct: 133 FCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAV 192
Query: 294 YQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLF 353
YQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF
Sbjct: 193 YQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELF 252
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY Q
Sbjct: 253 ESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQ 312
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA---DCNTKIITPKNCQSVEMYFNSE 470
TS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F E
Sbjct: 313 TSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDDVHIEVHNPRNTEAVTLNFRGE 372
Query: 471 KMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
K+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 373 KLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 424
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/420 (58%), Positives = 304/420 (72%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I PLGAGNEVGRSCV + G+TI+ DCG+HPAY+GMA+LP+ D +D S ID + I
Sbjct: 5 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFI 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+F+G+V+MTH TKAI K LL DY+++ S + + E D+
Sbjct: 65 THFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDFYTETDLV 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+ D+I +D+HQ V V GIK AGHVLGAAMF+V+I ++LYTGD+SREEDRHL+
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDRHLK 184
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P D I ESTYGVQ H PR RE RFT ++ + + +GGR L+P FALGRAQEL
Sbjct: 185 AAESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQEL 244
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+E+W ++ IPIYYAS LAK+CM VYQTYI MNERI+ NPF FK++
Sbjct: 245 LLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKLSLVRNPFAFKYVK 304
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L ID F D GP V+MASPG LQSGLSR LF+ WCSD KNA +IPGY V+GTLAK I+S
Sbjct: 305 NLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTLAKEILS 364
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKE+ MNG LNM V YISFSAH D+ Q S F++E P + VHGE +EM RLK
Sbjct: 365 EPKEIEAMNGKKLRLNMSVEYISFSAHVDFTQNSQFIEECQPKYLFFVHGEMNEMQRLKN 424
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 245/420 (58%), Positives = 304/420 (72%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I PLGAGNEVGRSCV + G+TI+ DCG+HPAY+GMA+LP+ D +D S ID + I
Sbjct: 92 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSKIDAVFI 151
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+F+G+V+MTH TKAI K LL DY+++ S + + E D+
Sbjct: 152 THFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRIINASSDTDFYTETDLV 211
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+ D+I +D+HQ V V GIK AGHVLGAAMF+V+I ++LYTGD+SREEDRHL+
Sbjct: 212 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDRHLK 271
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P D I ESTYGVQ H PR RE RFT ++ + + +GGR L+P FALGRAQEL
Sbjct: 272 AAESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQEL 331
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+E+W ++ IPIYYAS LAK+CM VYQTYI MNERI+ NPF FK++
Sbjct: 332 LLILEEHWGSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKLSLVRNPFAFKYVK 391
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L ID F D GP V+MASPG LQSGLSR LF+ WCSD KNA +IPGY V+GTLAK I+S
Sbjct: 392 NLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTLAKEILS 451
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKE+ MNG LNM V YISFSAH D+ Q S F++E P + VHGE +EM RLK
Sbjct: 452 EPKEIEAMNGKKLRLNMSVEYISFSAHVDFTQNSQFIEECQPKYLFFVHGEMNEMQRLKN 511
>gi|444731702|gb|ELW72051.1| Cleavage and polyadenylation specificity factor subunit 3 [Tupaia
chinensis]
Length = 587
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 241/398 (60%), Positives = 305/398 (76%), Gaps = 3/398 (0%)
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
+S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++L
Sbjct: 19 ISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLL 78
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR
Sbjct: 79 YTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGR 138
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR
Sbjct: 139 GLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRK 198
Query: 308 QFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I
Sbjct: 199 QININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIA 258
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++I
Sbjct: 259 GYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVI 318
Query: 428 LVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
LVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K P
Sbjct: 319 LVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKP 378
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
E G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 379 EQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 416
>gi|281206064|gb|EFA80253.1| beta-lactamase domain-containing protein [Polysphondylium pallidum
PN500]
Length = 656
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 250/419 (59%), Positives = 318/419 (75%), Gaps = 3/419 (0%)
Query: 107 MTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY 166
MTH TKAIYK+L+TDYVKVS ++ E++ F++ D+ +S +KIE + +H+ +E GIKF CY
Sbjct: 1 MTHPTKAIYKILMTDYVKVSSMT-EEIPFNDIDLKKSSEKIEQIKYHEKLEHKGIKFCCY 59
Query: 167 TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQP 226
AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AE P + DI IIESTYGVQ+H+P
Sbjct: 60 NAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVNVDILIIESTYGVQVHEP 119
Query: 227 RNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPL 286
R REKRFT IH + +GGR LIP FALGRAQELLLILDEYW HPE IPIYYAS L
Sbjct: 120 RLEREKRFTSSIHEVVKRGGRCLIPVFALGRAQELLLILDEYWIAHPELQKIPIYYASAL 179
Query: 287 AKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQS 346
A+KCM+VYQTYI MNERIR QF SNPF FKHI ++ I+ F+D GP V MASPG LQS
Sbjct: 180 ARKCMSVYQTYINMMNERIRAQFDLSNPFSFKHIENISGIERFTDDGPCVFMASPGMLQS 239
Query: 347 GLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFS 406
GLSRQLF+ WCSDK N VIPGY VEGTLAK I+SEP E+T +G+ PL++ V Y+SFS
Sbjct: 240 GLSRQLFERWCSDKMNGVVIPGYNVEGTLAKHIMSEPDEITRTDGVNVPLHLTVTYVSFS 299
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
AH+D+ QTS F++E+ PP+++LVHG+++EM RLKT L+ + N I+TPKN V+M
Sbjct: 300 AHSDFLQTSEFIQEIHPPHVVLVHGDANEMSRLKTSLIAKFKTIN--IMTPKNTHIVQME 357
Query: 467 FNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
F +EK+AK +G +A P + ++G+LV K FT+ I+AP DLH ++ L I Q+ T
Sbjct: 358 FRAEKVAKMLGAIAANPPRESKKIAGLLVTKDFTHHIIAPSDLHNYTNLKINTIKQKQT 416
>gi|50287519|ref|XP_446189.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637743|sp|Q6FUA5.1|YSH1_CANGA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49525496|emb|CAG59113.1| unnamed protein product [Candida glabrata]
Length = 771
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/492 (51%), Positives = 348/492 (70%), Gaps = 18/492 (3%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
V +Q LG GNEVGRSC + +KGKTI+ D GIHPAY GMA+LP++D+ D S +
Sbjct: 3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIV 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV------SV 130
DVLLI+HFHLDHAASLPY ++KT FKGRVFMTH TKAIY+ LL D+V+V+ + +
Sbjct: 63 DVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAE 122
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
+D L+ +D+ S DKIE +D+H ++VNGIKF + AGHVLGAAMF ++IAG+RVL+TG
Sbjct: 123 DDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTG 182
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSRE DRHL +AE+P DI I+EST+G H+PR REK+ T +IHST+++GGRVL+
Sbjct: 183 DYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGGRVLM 242
Query: 251 PAFALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
P FALGRAQEL+LILDEYWS H E + IPI+YAS LA+KC++V+QTY+ MN+ IR
Sbjct: 243 PVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVFQTYVNMMNDNIRK 302
Query: 308 QFANS--NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+F +S NPF FK+I+ + ++D+F D GPSV++ASPG LQ+GLSR L + WC D+KN +
Sbjct: 303 KFRDSQTNPFIFKNIAYIKNLDEFQDFGPSVMLASPGMLQNGLSRDLLERWCPDEKNLVL 362
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
I GY VEGT+AK ++ EP + ++ +T P +V +SF+AH D+ + F++++
Sbjct: 363 ITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEELSFAAHVDFQENLEFIEQINA 422
Query: 424 PNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGR 478
NIILVHGE + MGRLK+ L++ A + + P+NC +++ K+AK +G
Sbjct: 423 SNIILVHGEPNPMGRLKSALLSNYASFKGTEDEVHVHNPRNCYELDIECKGVKVAKAVGN 482
Query: 479 LAEKTPEVGETV 490
+ ++ E V
Sbjct: 483 IVDEIKRTEEEV 494
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 267/521 (51%), Positives = 355/521 (68%), Gaps = 27/521 (5%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAP L IT LGAG E Y+GKTI+ D G+HPAYSG+A+LP+ DE+D
Sbjct: 3 DAPT------LKITLLGAGQE---------YRGKTIVCDAGVHPAYSGIASLPFVDELDW 47
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
S +DVLLITHFHLDHAA+L Y EKT F KG+V+MTH TKA++K ++ D+V++S S
Sbjct: 48 STVDVLLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSS-ST 106
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
D LF DI S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYT
Sbjct: 107 SDALFSPLDIQMSLSSIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYT 166
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDYSREEDRHL AE+P PD+ IIESTYGVQ + R +E RFT+++HS I +GG VL
Sbjct: 167 GDYSREEDRHLVKAEVPPIRPDVLIIESTYGVQTLEGREEKELRFTNLVHSIIRRGGHVL 226
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLILDEYW HP+ N+PIYYAS LA+K MAVYQTYI +MN +R++F
Sbjct: 227 LPTFALGRAQELLLILDEYWKKHPDLQNVPIYYASSLARKSMAVYQTYIHTMNSNVRSRF 286
Query: 310 AN-SNPFKFKHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
A NPF FKHIS L + ++ P VV+ASPG + SG SR+L ++W D +N
Sbjct: 287 AKRDNPFVFKHISNLPQSKGWERKIAEGPPCVVLASPGFMTSGASRELLELWAPDSRNGV 346
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
+I GY +EGT+A+ I SEP+E+ + G+ P + V ISFSAH DY+Q S F++ +
Sbjct: 347 IITGYSIEGTMAREIQSEPEEIVSLKGVPIPRKISVDEISFSAHVDYSQNSEFIEMIKAQ 406
Query: 425 NIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+I+LVHGE MGRL+ + D + KI TP+N +++E+ F E++AK IG LA +
Sbjct: 407 HIVLVHGEQTAMGRLRAAMTDRYKSRDEDVKIHTPRNLETLELTFRGERVAKAIGTLASQ 466
Query: 483 TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
P+ G+T+SG+LV K ++Y ++ P DL F+ LST +TQR
Sbjct: 467 PPQPGDTLSGLLVSKDYSYTLLDPRDLRDFAGLSTCVVTQR 507
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/504 (51%), Positives = 337/504 (66%), Gaps = 10/504 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I PLGAGNEVGRSCV + G+TI+ DCG+HPAY+G+A+LP+ D +D S ID + I
Sbjct: 5 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFI 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+FKG+V+MTH TKAI K LL DY+++ + + + E D+
Sbjct: 65 THFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTESDLI 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+ D+I +D+HQ V V GIK AGHVLGAAMF+++I +VLYTGD+SREEDRHL+
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSREEDRHLK 184
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P D I ESTYGVQ H PR RE RFT ++ + + +GGR L+P FALGRAQEL
Sbjct: 185 AAESPGCKIDGLITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQEL 244
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+E+W+++ IPIYYAS LAK+CM VYQTYI MNERI+ NPF FK++
Sbjct: 245 LLILEEHWNSNTSLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKLSLVRNPFAFKYVK 304
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L ID F D GP V+MASPG LQSGLSR LF+ WCSD KNA +IPGY V+GTLAK I+S
Sbjct: 305 NLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTLAKEILS 364
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKE+ +NG LNM V YISFSAH D+ Q S F++E P ++ VHGE +EM RL+
Sbjct: 365 EPKEIEALNGKKLRLNMSVEYISFSAHVDFTQNSQFIEECQPKHLFFVHGEMNEMQRLRN 424
Query: 442 KLMTELADCNTKII--TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGF 499
+ ++I T +N + E + AK T GE GI+V
Sbjct: 425 VIQQRNEKKGIEMILYTLRNGEEAEFDLVKDNEAKIF------TNVEGE-FEGIIVGTED 477
Query: 500 TYQIMAPDDLHIFSQLSTANITQR 523
+I D+L I S+ NI +R
Sbjct: 478 DIRIYKRDEL-IESKYKEMNIYER 500
>gi|406601461|emb|CCH46911.1| hypothetical protein BN7_6516 [Wickerhamomyces ciferrii]
Length = 679
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/488 (51%), Positives = 350/488 (71%), Gaps = 14/488 (2%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ D G+HPAYSG+AALP++DE D S +D+LLI+HFHLDHAASLPY ++ T FKGRVFMTH
Sbjct: 1 MLDAGVHPAYSGIAALPFYDEFDLSTVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDM--LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT 167
TKAIY+ LL+D+VKV+ + L+ ++D++ S D+IE +D+H T+EV+GI+F Y
Sbjct: 61 PTKAIYRWLLSDFVKVTSIGSSSSSALYTDEDLSESFDRIETIDYHSTIEVDGIRFTAYH 120
Query: 168 AGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPR 227
AGHVLGAAMF ++I G+++L+TGDYSREE+RHL AE+P PD+ + EST+G H+PR
Sbjct: 121 AGHVLGAAMFFIEIGGLKLLFTGDYSREENRHLNPAEVPPTKPDVMVTESTFGTATHEPR 180
Query: 228 NIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLA 287
+E R T++IHST+ +GGRVL+P FALG AQELLLILDEYWS H + N+ +YYAS LA
Sbjct: 181 LEKEVRLTNLIHSTLIKGGRVLLPVFALGTAQELLLILDEYWSQHQDLENVNVYYASSLA 240
Query: 288 KKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQ 345
KKC+AV+QTYI MN+ IR QF NSNPF+FK+I + ++D F D GP VV+ASPG LQ
Sbjct: 241 KKCLAVFQTYINMMNDNIRKQFRDQNSNPFQFKYIKNIKNLDKFDDFGPCVVVASPGMLQ 300
Query: 346 SGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMN-GLTAPLNMQVHYI 403
+G+SR+L + W D +N+ ++ GY VEGTLAKT+++EP + +L N P + + I
Sbjct: 301 NGVSRELLERWAPDSRNSVILTGYSVEGTLAKTLLTEPDHIPSLQNPDNNVPRRLNIEEI 360
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPK 458
SF+AH DY Q S F++ + P +IILVHGES+ MGRLK+ L+++ + + ++ P+
Sbjct: 361 SFAAHVDYEQNSKFIELVDPKSIILVHGESNPMGRLKSALLSKYSKFKGTENEVRVYNPR 420
Query: 459 NCQSVEMYFNSEKMAKTIGRL-AEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLST 517
NC +++ K+AK G + AEK + +T+SG+LV K F M DDL ++ L++
Sbjct: 421 NCDELDLKLKGLKIAKAFGSIVAEK--DKADTLSGVLVSKDFDLNFMKVDDLREYAGLTS 478
Query: 518 ANITQRIT 525
+ +R T
Sbjct: 479 TIVKERQT 486
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/557 (46%), Positives = 363/557 (65%), Gaps = 60/557 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HP Y+G+++LP++DE D S +D+LLI+HFHLDH
Sbjct: 13 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGYAGLSSLPFYDEYDLSKVDILLISHFHLDH 72
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------------SVEDML 134
AASLPY ++ T F GRVFMTHATKAIY+ LL+D+V+V+ + + L
Sbjct: 73 AASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVRVTSIGGGGDSRLNSGNETATSSNL 132
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ + D+ RS D+IE +D+H T+EV GI+F Y AGHVLGA M+ V+I G++VL+TGDYSR
Sbjct: 133 YTDDDLIRSFDRIETIDYHSTIEVEGIRFTAYHAGHVLGACMYFVEIGGLKVLFTGDYSR 192
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
EEDRHL+ AE+P PDI I EST+G H+PR +E R T +IH T+ +GGR+L+P FA
Sbjct: 193 EEDRHLQVAEVPPMRPDILITESTFGTATHEPRLEKEARMTKIIHLTLLKGGRILMPVFA 252
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-- 312
LGRAQELLLIL+EYW + + HNI +++AS LA+KCMAVYQTY MN+ IR+ +++
Sbjct: 253 LGRAQELLLILEEYWLQNEDLHNINVFFASSLARKCMAVYQTYTNIMNDNIRHGVSSASG 312
Query: 313 ---NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
NPF+FKHI + S+D F D+GP VV+A+PG LQ+G+SR+L + W D KNA ++ GY
Sbjct: 313 GKLNPFQFKHIKLIRSLDKFQDIGPCVVVAAPGMLQNGVSRELLERWAPDAKNAVIMTGY 372
Query: 370 VVEGTLAKTIISEPKEV-TLMNG-LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
VEGT+AK +++EP + +L N +T P M + ISF+AH D+ + + F+ + P II
Sbjct: 373 SVEGTMAKELLTEPHTIQSLQNADVTIPRRMAIEEISFAAHVDFQENAGFIDMINPLKII 432
Query: 428 LVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
LVHGES+ MGRLK+ L+++ + + K+ P+NC + + K+AK +G LAE+
Sbjct: 433 LVHGESNPMGRLKSALLSKYSSRKGTEQEVKVFNPRNCDELLIGIRGLKIAKVLGNLAEE 492
Query: 483 -------------------------------TPE---VGETVSGILVKKGFTYQIMAPDD 508
T E G T++G+LV K F + D
Sbjct: 493 ELAKLQKDISKKLKEDESKMDETTDGEVNGDTSEPIKTGHTIAGVLVSKDFDLSFLQMQD 552
Query: 509 LHIFSQLSTANITQRIT 525
LH ++QLST+ + +I+
Sbjct: 553 LHEYTQLSTSILKSKIS 569
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/420 (57%), Positives = 307/420 (73%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ + PLGAGNEVGRSCV + G+TI+ DCG+HPAY+G+A+LP+ D +D S ID + +
Sbjct: 5 EKIKVMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFV 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+FKG+V+MTH TKAI K LL DY+++ + + + E D+
Sbjct: 65 THFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTETDLV 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+ D+I +D+HQ V V GIK AGHVLGAAMF+V+I ++LYTGD+SREEDRHL+
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSREEDRHLK 184
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P D I ESTYGVQ H PR+ RE RFT ++ + + +GGR L+P FALGRAQEL
Sbjct: 185 AAESPGCKIDALITESTYGVQCHLPRSEREGRFTSIVQNVVQRGGRCLLPVFALGRAQEL 244
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+E+WS++ IPIYYAS LAK+CM VYQTYI MNERI+ NPF FK++
Sbjct: 245 LLILEEHWSSNASLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKLSLVRNPFAFKYVK 304
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L ID F D GP V+MASPG LQSGLSR LF+ WCSD KNA +IPGY V+GTLAK I+S
Sbjct: 305 NLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWCSDSKNAVIIPGYCVDGTLAKEILS 364
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKE+ +NG LNM V YISFSAH D+ Q S F++E P ++ VHGE +EM RL+
Sbjct: 365 EPKEIEALNGKRLRLNMSVEYISFSAHVDFTQNSQFIEECQPRHLFFVHGEMNEMQRLRN 424
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 253/490 (51%), Positives = 329/490 (67%), Gaps = 9/490 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ + PLGAGNEVGRSC+ +SY K I+FDCG+H A++G+A+LP+ D +D S +D I
Sbjct: 29 NKIKVKPLGAGNEVGRSCILISYNNKNIMFDCGVHSAHTGIASLPFLDTVDLSTVDACFI 88
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA LPY EKT FKG+VFMTH TKAI + +L DYV++ S + + E+D+N
Sbjct: 89 THFHLDHAAGLPYLTEKTNFKGKVFMTHPTKAILRWMLNDYVRIINASSDVDFYTEKDLN 148
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+KI +D+HQ + + GIK AGHVLGAAMF++ I +LYTGDYSREEDRHL+
Sbjct: 149 NCYNKIIPIDYHQEINIEGIKVIGLNAGHVLGAAMFLIKIEDSVMLYTGDYSREEDRHLK 208
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P I ESTYGVQ H R+ RE RFT I +++GGR L+P FALGRAQEL
Sbjct: 209 AAESPNCKIHALITESTYGVQCHLSRDERESRFTSTITKIVTRGGRCLLPVFALGRAQEL 268
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLILDE+WSN+P+ H+IPIYYAS LAKKC+ +YQTYI MN+ I+ NPF F+++
Sbjct: 269 LLILDEHWSNNPQLHSIPIYYASALAKKCIGIYQTYINMMNDHIKKSSLIKNPFAFQYVK 328
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L SID F D P V+MASPG LQSGLSR+LF+ WC D++N +IPGY V+GTLAK I++
Sbjct: 329 NLKSIDFFEDNSPCVIMASPGMLQSGLSRELFEKWCGDRRNGVIIPGYSVDGTLAKEILN 388
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKEV M G LNM V YISFSAH D+AQ F+ E P ++ VHGE++EM RLK
Sbjct: 389 EPKEVMSMKGNVLKLNMSVDYISFSAHVDFAQNVQFIDECQPDHLFFVHGEANEMNRLKN 448
Query: 442 KLM--TELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGF 499
+ E + ++ T +NC+ + A +G + GE GILV+
Sbjct: 449 VIAQRNEKKNVQMELYTLRNCEEGSFDVKKKTEASIVGDIE------GE-FEGILVENSG 501
Query: 500 TYQIMAPDDL 509
QI ++L
Sbjct: 502 DIQIYRKNEL 511
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 246/468 (52%), Positives = 338/468 (72%), Gaps = 17/468 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG GNEVGRSC + YKGKTI+ D G+HPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGGNEVGRSCHILQYKGKTIMLDAGVHPAYQGLASLPFYDEFDLSTVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-----VEDMLFDEQDINRS 143
AASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + +D L+ ++D++ S
Sbjct: 74 AASLPYVMQRTNFNGRVFMTHPTKAIYRWLLKDFVRVTSIGGSPNEKDDNLYTDEDLSES 133
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+IE +D+H T++VNGIKF + AGHVLGAAMF +++ +RVL+TGDYSRE DRHL +A
Sbjct: 134 FDRIETIDYHSTMDVNGIKFTAFHAGHVLGAAMFQIELGSLRVLFTGDYSRELDRHLNSA 193
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P + D+ I+EST+G H+PR REK+ T +IHST+++GGRVL+P FALGRAQEL+L
Sbjct: 194 EIPPLASDVLIVESTFGTATHEPRLSREKKLTQLIHSTVTKGGRVLMPVFALGRAQELML 253
Query: 264 ILDEYWS-NHPEFHN--IPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFK 318
ILDEYWS N E N +PIYYAS LAK+ M+V+QTY+ MN+ IR +F +S NPF FK
Sbjct: 254 ILDEYWSHNEEELGNGQVPIYYASNLAKRSMSVFQTYVNMMNDSIRKKFRDSKTNPFIFK 313
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+IS L +ID F D GPSV++A+PG LQ+GLSR L + WC + KN +I GY VEG++AK
Sbjct: 314 NISYLKNIDSFQDFGPSVMLAAPGMLQNGLSRDLLEKWCPEPKNMVLITGYSVEGSMAKY 373
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++ EP+ + +N + P QV ISF+AH D+ + F++++ NIILVHGES+ M
Sbjct: 374 LMLEPENIPSVNNPEVNIPRRCQVEEISFAAHVDFQENIDFIEQIRASNIILVHGESNPM 433
Query: 437 GRLKTKLMTELADCN-----TKIITPKNCQSVEMYFNSEKMAKTIGRL 479
GRLK+ L++ + + P+NC V + F K+AK +G +
Sbjct: 434 GRLKSALLSNFSSTKGTEDEVHVFNPRNCADVILEFKGVKVAKAVGTI 481
>gi|444315239|ref|XP_004178277.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
gi|387511316|emb|CCH58758.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
Length = 781
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 245/471 (52%), Positives = 341/471 (72%), Gaps = 17/471 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++D+ D S IDVLLI+HFHLDH
Sbjct: 24 LGGANEVGRSCHIIQYKGKTVMLDAGIHPAYQGLASLPFYDDFDLSTIDVLLISHFHLDH 83
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFDEQDINRS 143
AASLPY +++T F+GRVFMTH TKAIY+ LL D+VKV+ + + ++ L++++D+ S
Sbjct: 84 AASLPYVMQRTNFRGRVFMTHPTKAIYRWLLRDFVKVTSIGGDAENKDENLYNDEDLVES 143
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+IE +D+H T++VNGIKF Y AGHVLGAAMF ++IAG+R+L+TGDYSRE DRHL +A
Sbjct: 144 FDRIETIDYHSTIDVNGIKFTAYHAGHVLGAAMFQIEIAGLRILFTGDYSRELDRHLNSA 203
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
E+P + DI I+EST+G H+PR RE + T ++HS +S+GGRVL+P FALGRAQE++L
Sbjct: 204 EIPPLASDILIVESTFGTATHEPRLNREMKLTQLVHSIVSRGGRVLMPVFALGRAQEIML 263
Query: 264 ILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFK 318
ILDEYW+NH E +PIYYAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK
Sbjct: 264 ILDEYWNNHHEELGGGQVPIYYASSLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFK 323
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+IS L ++D+F D GPSV++ASPG LQSG+SR L + WC + KN +I GY VEGT+AK
Sbjct: 324 NISYLRNLDNFEDFGPSVLLASPGMLQSGISRDLLERWCPEDKNMVLITGYSVEGTMAKY 383
Query: 379 IISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++ EP + +N ++ P ++ ISF+AH D+ + F++++ NIILVHGES+ M
Sbjct: 384 LMVEPDTIPSINNPEISIPRRCKIEEISFAAHVDFQENLEFIEKINASNIILVHGESNPM 443
Query: 437 GRLKTKLMTEL-----ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
GRLK+ +++ + + P+N V + F +AK IG + ++
Sbjct: 444 GRLKSAILSNFTSLKGTENEVHVYNPRNGVEVTLEFKGTHIAKAIGSIVDQ 494
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/420 (57%), Positives = 305/420 (72%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+++ I PLGAGNEVGRSCV + G+TI+ DCG+HPAY+G+A+LP+ D +D S ID + I
Sbjct: 5 EKIKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSKIDAIFI 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHAA+LP+ EKT+FKG+V+MTH TKAI K LL DY+++ + + + E D+
Sbjct: 65 THFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIRLINAASDADFYTETDLV 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+ D+I +D+HQ V V GIK AGHVLGAAMF+++I +VLYTGD+SREEDRHL+
Sbjct: 125 KCYDRIIPIDYHQEVNVKGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSREEDRHLK 184
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE P D I ESTYGVQ H PR RE RFT ++ + + +GGR L+P FALGRAQEL
Sbjct: 185 AAESPGCKIDALITESTYGVQCHLPRAEREGRFTSIVQNVVQRGGRCLLPVFALGRAQEL 244
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLIL+E+W ++ IPIYYAS LAK+CM VYQTYI MNERI+ NPF FK++
Sbjct: 245 LLILEEHWGSNASLQKIPIYYASALAKRCMGVYQTYIGMMNERIQKLSLVRNPFAFKYVK 304
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
L ID F D GP V+MASPG LQSGLSR LF+ WCSD +NA +IPGY V+GTLAK I+S
Sbjct: 305 NLKGIDSFDDEGPCVIMASPGMLQSGLSRDLFERWCSDSRNAVIIPGYCVDGTLAKEILS 364
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
EPKE+ +NG LNM V YISFSAH D+ Q S F++E P ++ VHGE +EM RL+
Sbjct: 365 EPKEIEALNGKKLRLNMSVEYISFSAHVDFTQNSQFIEECQPKHLFFVHGEMNEMQRLRN 424
>gi|342180524|emb|CCC90000.1| putative cleavage and polyadenylation specificity factor subunit
[Trypanosoma congolense IL3000]
Length = 766
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/528 (50%), Positives = 362/528 (68%), Gaps = 16/528 (3%)
Query: 3 SVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
+VG P++ + D++ I P+G+G EVGRSC+ + YKG++++ DCG HPA SG+
Sbjct: 23 AVGHSPAVTQAST------DEVEILPIGSGGEVGRSCIVVRYKGRSVMLDCGNHPAKSGL 76
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122
+LP+FD I IDV+LITHFHLDH +LPYF E+T FKGR+FMT ATKA YK+++ D+
Sbjct: 77 DSLPFFDSIRCEEIDVVLITHFHLDHCGALPYFCEQTAFKGRIFMTSATKAFYKMVMNDF 136
Query: 123 VKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA 182
++V S ED++ +E + +++KIE +++H+ V VNGI F + AGHVLGAA+FMVDIA
Sbjct: 137 LRVG-ASAEDIVNNEW-LQSTIEKIETVEYHEEVTVNGIHFQPFNAGHVLGAALFMVDIA 194
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242
G++VLYTGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H +
Sbjct: 195 GMKVLYTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREERETLFTTWVHDVV 254
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
GGR LIP FALGRAQELLLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN
Sbjct: 255 KGGGRCLIPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMN 314
Query: 303 ERIRNQFAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
+R++ Q N NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC DK+
Sbjct: 315 DRVKEQHENHRNPFVFKYIQSLLDTRSFEDTGPCVVLASPGMLQSGISLELFERWCGDKR 374
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKE 420
N ++ GY V+GT+AK I+S+PKE+T +G PL M+ V +SFSAH+D QT F++
Sbjct: 375 NGIIVAGYCVDGTIAKEILSKPKEITKPDGKVLPLRMRTVQSVSFSAHSDGRQTRDFIQA 434
Query: 421 LMPPN---IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIG 477
L PN +ILVHG MG+LK KL + A+ K+ KN ++V + F+ ++ AK +G
Sbjct: 435 L--PNTKHVILVHGNIGAMGQLKNKLQQDFAERGMKVYATKNQEAVRIPFSVQRTAKVLG 492
Query: 478 RLAEKTPEVGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQRI 524
LA P GE +SG+L+ G TY I+ P D+ F+ L A I Q I
Sbjct: 493 TLASNPPRDGEFISGVLLMSGQHTYSIVHPTDIPHFTDLDVAQIHQAI 540
>gi|50363261|gb|AAT75333.1| cleavage polyadenylation specificity factor CPSF73 [Trypanosoma
cruzi]
Length = 762
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 253/518 (48%), Positives = 359/518 (69%), Gaps = 6/518 (1%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ + D P + D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+F
Sbjct: 23 AFRDSDVPAAASSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFF 82
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID++LITHFHLDH +LPYF E+T FKGRVFMT ATKA YK+++ D+++V
Sbjct: 83 DSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-A 141
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
S D++ +E + +++KIE +++H+ V VNGI+F + AGHVLGAA+FMVDIAG++ LY
Sbjct: 142 SANDIVTNEW-LQSTIEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLY 200
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + GGR
Sbjct: 201 TGDFSRVPDRHLLGAEVPSYSPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRC 260
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q
Sbjct: 261 LVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQ 320
Query: 309 FAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N +I
Sbjct: 321 HANHRNPFVFKYIHSLMETRSFEDTGPCVVLASPGMLQSGISLELFERWCGDRRNGIIIA 380
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPPN 425
GY V+GT+AK I+++PKEVT +G PL M+ + +SFSAH+D QT F++ L +
Sbjct: 381 GYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQH 440
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
+ILVHG MG+L+ KL + A+ K+ + +N +++ + F+ ++ AK +G LA
Sbjct: 441 VILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIPFSVQRTAKVMGALANSPAR 500
Query: 486 VGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG L+ G +Y I+ P ++ +F+ L+ A I Q
Sbjct: 501 NGEFVSGALLVSGQHSYNIVHPTEIPLFTDLNVAQIQQ 538
>gi|407851025|gb|EKG05159.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 762
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 253/518 (48%), Positives = 359/518 (69%), Gaps = 6/518 (1%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ + D P + D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+F
Sbjct: 23 AFRDSDVPAAASSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFF 82
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID++LITHFHLDH +LPYF E+T FKGRVFMT ATKA YK+++ D+++V
Sbjct: 83 DSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-A 141
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
S D++ +E + +++KIE +++H+ V VNGI+F + AGHVLGAA+FMVDIAG++ LY
Sbjct: 142 SANDIVTNEW-LQSTIEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLY 200
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + GGR
Sbjct: 201 TGDFSRVPDRHLLGAEVPSYSPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRC 260
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q
Sbjct: 261 LVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQ 320
Query: 309 FAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N +I
Sbjct: 321 HANHRNPFVFKYIHSLMETRSFEDTGPCVVLASPGMLQSGISLELFERWCGDRRNGIIIA 380
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPPN 425
GY V+GT+AK I+++PKEVT +G PL M+ + +SFSAH+D QT F++ L +
Sbjct: 381 GYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQH 440
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
+ILVHG MG+L+ KL + A+ K+ + +N +++ + F+ ++ AK +G LA
Sbjct: 441 VILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIPFSVQRTAKVMGALANSPAR 500
Query: 486 VGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG L+ G +Y I+ P ++ +F+ L+ A I Q
Sbjct: 501 NGEFVSGALLVSGQHSYSIVHPTEIPLFTDLNVAQIQQ 538
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/519 (49%), Positives = 356/519 (68%), Gaps = 11/519 (2%)
Query: 8 PSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
P+ R +AP D++ + P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+ +LP+
Sbjct: 15 PAALRSNAP-----DEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPF 69
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
FD I IDV+LITHFHLDH +LPYF +T+FKGR+FMT ATKA YK+++ D++++
Sbjct: 70 FDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIG- 128
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
D++ E + ++D+IE +++H+ V VNGI F + AGHVLGAAMFMVDIAG+R L
Sbjct: 129 AGASDLVTSEW-LQSTIDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRAL 187
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + +GGR
Sbjct: 188 YTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGR 247
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
L+P FALGRAQELLLIL+E+W H E NIPIYYAS LA++CM +YQT++ +MN+R++
Sbjct: 248 CLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRVKQ 307
Query: 308 QFAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N ++
Sbjct: 308 QHANHHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERWCGDRRNGIIM 367
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKELMP-P 424
GY V+GT+AK ++++PKEV +G PL M + +SFSAH+D QT F++ L
Sbjct: 368 AGYCVDGTIAKDVLAKPKEVAKPDGKVLPLRMSTIEAVSFSAHSDGRQTRDFIQSLTKVK 427
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
+ ILVHG MG+LK+KL+ + D N + T N +S+ + F E+ AK +G+LA +
Sbjct: 428 HTILVHGNPGAMGQLKSKLLQDFRDRNMSVYTTMNQESIRIPFVQERTAKVMGKLANMSL 487
Query: 485 EVGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG+++ G + Y I+ PDD+ +F+ LS I Q
Sbjct: 488 REGEFVSGVMLVSGQYQYSIVHPDDVPVFTDLSVNRIQQ 526
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/519 (49%), Positives = 355/519 (68%), Gaps = 11/519 (2%)
Query: 8 PSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
P+ R +AP D++ + P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+ +LP+
Sbjct: 15 PAALRSNAP-----DEVEVLPIGSGGEVGRSCVVVQYKGRGVMLDCGNHPAKSGLDSLPF 69
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
FD I IDV+LITHFHLDH +LPYF +T+FKGRVFMT ATKA YK+++ D++++
Sbjct: 70 FDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDFLRIG- 128
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
D++ E + ++D+IE +++H+ V VNGI F + AGHVLGAAMFMVDIAG+R L
Sbjct: 129 AGASDLVTSEW-LQSTIDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRAL 187
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + +GGR
Sbjct: 188 YTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGR 247
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
L+P FALGRAQELLLIL+E+W H E NIPIYYAS LA++CM +YQT++ +MN+R++
Sbjct: 248 CLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRVKQ 307
Query: 308 QFAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N ++
Sbjct: 308 QHANHHNPFVFKYIRSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERWCGDRRNGIIM 367
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKELMP-P 424
GY V+GT+AK ++++PKE+T +G PL M + +SFSAH+D QT F++ L
Sbjct: 368 AGYCVDGTIAKDVLAKPKEMTKPDGKVLPLRMSTIEAVSFSAHSDGRQTRDFIQNLTKVK 427
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
+ ILVHG MG+LK KL+ + D N + T N +S+ + F E+ AK +G+LA +
Sbjct: 428 HTILVHGNPGAMGQLKNKLLQDFRDRNMSVYTTMNQESIRIPFVQERTAKVMGKLANMSL 487
Query: 485 EVGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG+++ G Y I+ PDD+ +F+ LS I Q
Sbjct: 488 REGEFVSGVMLVSGQHQYSIVHPDDVPVFTDLSVNRIQQ 526
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/515 (49%), Positives = 355/515 (68%), Gaps = 11/515 (2%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
R +AP D++ + P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+ +LP+FD I
Sbjct: 19 RSNAP-----DEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPFFDSI 73
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
IDV+LITHFHLDH +LPYF +T+FKGR+FMT ATKA YK+++ D++++
Sbjct: 74 KCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIG-AGAS 132
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
D++ E + ++D+IE +++H+ V VNGI F + AGHVLGAAMFMVDIAG+R LYTGD
Sbjct: 133 DLVTSEW-LQSTIDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGD 191
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
+SR DRHL AE+P +SPDI I EST G++ + R RE+ FT +H + +GGR L+P
Sbjct: 192 FSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREEREQLFTGSVHEVVRRGGRCLVP 251
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
FALGRAQELLLIL+E+W H E NIPIYYAS LA++CM +YQT++ +MN+R++ Q AN
Sbjct: 252 VFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQHAN 311
Query: 312 -SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N ++ GY
Sbjct: 312 HHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYC 371
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKELMP-PNIIL 428
V+GT+AK ++++PKEVT +G PL M + +SFSAH+D QT F++ L + IL
Sbjct: 372 VDGTIAKDVLAKPKEVTKPDGKVLPLRMSTIEAVSFSAHSDGRQTRDFIQNLTKVKHTIL 431
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHG MG+LK KL+ + D N + T N +S+ + F E+ AK +G+LA + + GE
Sbjct: 432 VHGNPGAMGQLKNKLLQDFRDRNMSVYTTMNQESIRIPFVQERTAKVMGKLANMSLQEGE 491
Query: 489 TVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
VSG+++ G Y I+ PDD+ +F+ LS I Q
Sbjct: 492 FVSGVMLVSGQHQYSIVHPDDVPVFTDLSVNRIQQ 526
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/507 (49%), Positives = 355/507 (70%), Gaps = 6/507 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I ID++LI
Sbjct: 37 DEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH +LPYF E+T+F+GR+FMT ATKA YK+++ D++++ S ED++ +E +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIG-ASAEDIVNNEW-LQ 154
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+++KIE +++H+ V VNGI F + AGHVLGAA+FMVDIAG+++LYTGD+SR DRHL
Sbjct: 155 STIEKIETVEYHEEVTVNGIHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVPDRHLL 214
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AE+P +SPDI I EST G++ + R RE FT +H + GGR L+P FALGRAQEL
Sbjct: 215 GAEVPPYSPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALGRAQEL 274
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFKHI 320
LLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q N NPF FK+I
Sbjct: 275 LLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKKQHENHRNPFVFKYI 334
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
L F D GP VV+ASPG LQSG+S +LF+ WC DK+N ++ GY V+GT+AK I+
Sbjct: 335 QSLLDTRSFEDTGPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVDGTIAKDIL 394
Query: 381 SEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHEMGR 438
S+P+E+T +G PL M+ + +SFSAH+D QT F++ L ++ILVHG MG+
Sbjct: 395 SKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTKHVILVHGNVGAMGQ 454
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
LK KL + AD ++ KN +++ + F+ ++ AK +G LA P GE +SG+L+ G
Sbjct: 455 LKNKLQQDFADRGVQVYATKNQEAIRIPFSVQRTAKVLGTLARNPPRDGEFISGVLLMSG 514
Query: 499 -FTYQIMAPDDLHIFSQLSTANITQRI 524
TY ++ P D+ F+ L A I Q I
Sbjct: 515 HHTYSVVHPTDIPHFTDLDVAQIQQAI 541
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 519 bits (1336), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/507 (49%), Positives = 355/507 (70%), Gaps = 6/507 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I ID++LI
Sbjct: 37 DEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIRCDEIDLVLI 96
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH +LPYF E+T+F+GR+FMT ATKA YK+++ D++++ S ED++ +E +
Sbjct: 97 THFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIG-ASAEDIVNNEW-LQ 154
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+++KIE +++H+ V VNGI F + AGHVLGAA+FMVDIAG+++LYTGD+SR DRHL
Sbjct: 155 STIEKIETVEYHEEVTVNGIHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVPDRHLL 214
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AE+P +SPDI I EST G++ + R RE FT +H + GGR L+P FALGRAQEL
Sbjct: 215 GAEVPPYSPDILIAESTNGIRELESREERESLFTTWVHDVVKGGGRCLVPVFALGRAQEL 274
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFKHI 320
LLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q N NPF FK+I
Sbjct: 275 LLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKKQHENHRNPFVFKYI 334
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
L F D GP VV+ASPG LQSG+S +LF+ WC DK+N ++ GY V+GT+AK I+
Sbjct: 335 QSLLDTRSFEDTGPCVVLASPGMLQSGISLELFERWCGDKRNGIIVAGYCVDGTIAKDIL 394
Query: 381 SEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHEMGR 438
S+P+E+T +G PL M+ + +SFSAH+D QT F++ L ++ILVHG MG+
Sbjct: 395 SKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTKHVILVHGNVGAMGQ 454
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
LK KL + AD ++ KN +++ + F+ ++ AK +G LA P GE +SG+L+ G
Sbjct: 455 LKNKLQQDFADRGVQVYATKNQEAIRIPFSVQRTAKVLGTLARNPPRDGEFISGVLLMSG 514
Query: 499 -FTYQIMAPDDLHIFSQLSTANITQRI 524
TY ++ P D+ F+ L A I Q I
Sbjct: 515 HHTYSVVHPTDIPHFTDLDVAQIQQAI 541
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 255/519 (49%), Positives = 355/519 (68%), Gaps = 11/519 (2%)
Query: 8 PSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
P+ R +AP D++ + P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+ +LP+
Sbjct: 15 PAALRSNAP-----DEVEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPF 69
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
FD I IDV+LITHFHLDH +LPYF +T+FKGR+FMT ATKA YK+++ D++++
Sbjct: 70 FDSIKCDEIDVVLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIG- 128
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
D++ E + ++D+IE +++H+ V VNGI F + AGHVLGAAMFMVDIAG+R L
Sbjct: 129 AGASDLVTSEW-LQSTIDRIETVEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRAL 187
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + +GGR
Sbjct: 188 YTGDFSRVPDRHLLGAEVPPYSPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGR 247
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
L+P FALGRAQELLLIL+E+W H E NIPIYYAS LA++CM +YQT++ +MN+R++
Sbjct: 248 CLVPVFALGRAQELLLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRVKQ 307
Query: 308 QFAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N ++
Sbjct: 308 QHANHHNPFVFKYIHSLMDTKSFEDNGPCVVLASPGMLQSGISLELFERWCGDRRNGIIM 367
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKELMP-P 424
GY V+GT+AK ++++PKEV +G PL M + +SFSAH+D QT F++ L
Sbjct: 368 AGYCVDGTIAKDVLAKPKEVAKPDGKVLPLRMSTIEAVSFSAHSDGRQTRDFIQSLTKVK 427
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
+ ILVHG MG+LK+KL+ + D N + T N +S+ + F E+ AK +G+LA +
Sbjct: 428 HTILVHGNPGAMGQLKSKLLQDFRDRNMSVYTTMNQESIRIPFVQERTAKVMGKLANMSL 487
Query: 485 EVGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG+++ G Y I+ PDD+ +F+ LS I Q
Sbjct: 488 REGEFVSGVMLVSGQHQYSIVHPDDVPVFTDLSVNRIQQ 526
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 248/491 (50%), Positives = 337/491 (68%), Gaps = 27/491 (5%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S + D LG NEVGRSC + YK K I+ D G+HP SGM +LP+FD+ D S +D
Sbjct: 8 SGDSDDFKFFGLGGCNEVGRSCHIIEYKNKVIMLDSGVHPGLSGMNSLPFFDDYDLSKVD 67
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-------- 129
+LLI+HFHLDHAASLPY +++T+F+GRVFMTHATKAIY+ LL+D+V+V+ +S
Sbjct: 68 ILLISHFHLDHAASLPYVMQQTSFRGRVFMTHATKAIYRWLLSDFVRVTSLSGSGDEGRS 127
Query: 130 ---------VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
L+ ++D+ S DKIE +D+H T+E+ GI+F Y AGHVLGA M+ V+
Sbjct: 128 MNGSQNSGTTSANLYTDEDLMSSFDKIETIDYHSTMEIEGIRFTAYHAGHVLGACMYFVE 187
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
I G++VL+TGDYSREEDRHL+ AE+P PDI I EST+G H+PR +E R IHS
Sbjct: 188 IGGLKVLFTGDYSREEDRHLKVAEVPPTRPDILITESTFGTATHEPRLEKETRMMKNIHS 247
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
TI +GGR+L+P FALGRAQELLLIL+EYWS + + N+ IYYAS LA+KCMAVYQTY
Sbjct: 248 TILKGGRILMPVFALGRAQELLLILEEYWSLNEDIQNVNIYYASNLARKCMAVYQTYTSI 307
Query: 301 MNERIRNQFANS---NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
MNE+IR ++S NPF+FKHI + SID D+GP VV+ASPG LQSG+SRQL + W
Sbjct: 308 MNEKIRLSASSSEKTNPFQFKHIKSIKSIDKIQDMGPCVVVASPGMLQSGVSRQLLERWA 367
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTS 415
D KNA ++ GY VEGT+AK +++EP + + ++ P + + ISF+AH D+ Q +
Sbjct: 368 PDPKNAVILTGYSVEGTMAKELLAEPHTIPSITNPEVSIPRRLSIDEISFAAHVDFQQNA 427
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSE 470
F++E+ P IILVHG+S+ MGRLK+ L++ + + K+ P+NC+ + +
Sbjct: 428 GFIEEVGPKKIILVHGDSNPMGRLKSALLSRYSSRKGTEEEVKVFNPRNCEELLIGIKGA 487
Query: 471 KMAKTIGRLAE 481
K+AK +G LAE
Sbjct: 488 KIAKVVGSLAE 498
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/545 (48%), Positives = 354/545 (64%), Gaps = 40/545 (7%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L T LG GNEVGRSC + YKGKT++ D G+H Y G+AALP++D+ D S +D+LL
Sbjct: 21 ADELTFTNLGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED---MLFDE 137
I+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V S ++ E
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIIDSVRVGGASSNGGSHSVYTE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSRE+D
Sbjct: 141 ADHLTTFAQIEAIDYHTTHTISSIRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDD 200
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I ESTYG+ H PR RE+ + S +++GGRVL+P FALG
Sbjct: 201 RHLVSAEVPKGVKIDVLITESTYGIASHIPRLEREQALMKSVTSILNRGGRVLMPVFALG 260
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPEF IPIYYAS LA+KCM VYQTY+ SMNE I+ F
Sbjct: 261 RAQELLLILDEYWDKHPEFQKIPIYYASNLARKCMLVYQTYVGSMNENIKRLFRERMAEA 320
Query: 310 -ANS------NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
ANS P+ FK+I L ++D F DVG V++ASPG LQ+G+SRQL + W KN
Sbjct: 321 EANSTSGGRGGPWDFKYIRSLKNLDRFDDVGGCVILASPGMLQNGISRQLLERWAPSDKN 380
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFS 406
+I GY VEGT+AK I+ EP + +M+G P V SF+
Sbjct: 381 GVIITGYSVEGTMAKQIMQEPDHIQAIMSGPQGFTRRSVPGETEKAMIPRRCSVQEFSFA 440
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT--KIITPKNCQSVE 464
AH D + F++E+ P +ILVHGE H M RLK+KL++ AD T K+ +PKNC+ +
Sbjct: 441 AHVDGVENREFIEEIAAPVVILVHGEQHNMMRLKSKLLSLNADKTTKVKVFSPKNCEPLR 500
Query: 465 MYFNSEKMAKTIGRLAEKTP--EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT- 521
+ F + K AK +G+LA P + + ++G+LV+ F +MAP+DL ++ L+T IT
Sbjct: 501 IPFVTSKTAKVVGKLANNPPPADSSQLITGVLVQNDFKMSLMAPEDLREYAGLTTTTITC 560
Query: 522 -QRIT 525
QR+T
Sbjct: 561 KQRMT 565
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/550 (47%), Positives = 359/550 (65%), Gaps = 46/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S++D+LLI
Sbjct: 23 DELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDLSSVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A LPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++ ++ +IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 EEHLSTLPQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE I + +++GGRVL+P FALG
Sbjct: 203 RHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE IPIYY +A+KC+ VYQTYI +MNE I+ F
Sbjct: 263 RAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNENIKRVFRERMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
A + P+ F+++ + +I+ F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 323 DAAGANSATAGPWNFRYVRSVKNIERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------PLNMQVHYI 403
++ GY VEGT+ K I++EP+++ +M+G A P V I
Sbjct: 383 GIIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMTGGDEEQKVMIPRRCTVDEI 442
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQ 461
SF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ AD K+ TP NC+
Sbjct: 443 SFAAHVDGVENREFIEEVGAPVVILVHGEKHQMMRLKSKLLSLNADKKVKVKVFTPANCE 502
Query: 462 SVEMYFNSEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLST 517
V + F +KMAK +GRLAE+ P E+ S G+LV+ GF +MAP+DL ++ L+T
Sbjct: 503 EVRIPFQVDKMAKVVGRLAERPPPADESESRLMNGVLVQNGFKLSLMAPEDLREYAGLAT 562
Query: 518 ANIT--QRIT 525
IT Q IT
Sbjct: 563 TTITCKQHIT 572
>gi|402217247|gb|EJT97328.1| Metallo-hydrolase/oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 780
Score = 516 bits (1329), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/515 (49%), Positives = 350/515 (67%), Gaps = 14/515 (2%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+L IT LGAG EVGRSC + + G T++ D G+HPA+ GMAALP+ D++D S +D LLIT
Sbjct: 9 KLSITLLGAGQEVGRSCCVIQHAGITVVCDAGVHPAFHGMAALPFIDDLDWSTVDALLIT 68
Query: 83 HFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--LFDE 137
HFHLDHAASL Y +EKT FK G+V+MTH TKA+Y+L++ DYV++S LF
Sbjct: 69 HFHLDHAASLTYIMEKTNFKDGKGKVYMTHPTKAVYRLMMQDYVRMSAAQSTSAPPLFTP 128
Query: 138 QDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
D++ ++ I + F T V G+ F Y AGHVLGA+MF++ +A +R+LYTGDYSREE
Sbjct: 129 LDLSITLPLINAVSFATTTTVIPGLSFTPYPAGHVLGASMFLIQLADLRILYTGDYSREE 188
Query: 197 DRHLRAAELPQFSP-DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
RHL AE+P + D+ IIEST+GVQ + R +E+RFT +IH + +GG VL+P FA+
Sbjct: 189 SRHLVRAEVPPGAGIDVLIIESTFGVQSTEGRREKEERFTSLIHRILMRGGHVLMPVFAV 248
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NP 314
G AQELLLILD+++ HPE H PIYYAS LA+KCMAVYQ Y+ MN IR +FAN+ NP
Sbjct: 249 GGAQELLLILDDFFEKHPELHKFPIYYASALARKCMAVYQGYVHVMNNNIRQRFANNQNP 308
Query: 315 FKFKHISPLNSIDDFS-DVG---PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F F+H+S + + +G P V++ASPG +QSG SR+L ++W D++N V+ GY
Sbjct: 309 FVFRHVSHIPRSSGWEKKIGEGPPCVILASPGMMQSGASRELLEMWAPDRRNGIVLTGYS 368
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
VEG++A+ I++EP E+ M G PL V ISFSAH DYAQ F++ + P+++LVH
Sbjct: 369 VEGSMARNIMNEPDEINAMKGTPIPLRCTVDNISFSAHVDYAQNREFIEAIGAPHVVLVH 428
Query: 431 GESHEMGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
GE +M RLK L + N I TPKNC+++E+ F E++AK IG LAE P+ G
Sbjct: 429 GEQSQMFRLKAALQAGYKERNEHITIHTPKNCETLELIFRGERVAKAIGTLAEHAPQAGA 488
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+SG+LV K FTY ++ P DL F+ LST+ I Q+
Sbjct: 489 QLSGLLVSKDFTYTLLDPRDLRDFTGLSTSTIVQK 523
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/550 (47%), Positives = 359/550 (65%), Gaps = 46/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S++D+LLI
Sbjct: 23 DELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDLSSVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A LPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++ ++ +IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 EEHLSTLPQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE I + +++GGRVL+P FALG
Sbjct: 203 RHLISAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITTILNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE IPIYY +A+KC+ VYQTYI +MNE I+ F
Sbjct: 263 RAQELLLILDEYWSRHPELQKIPIYYIGNMARKCIIVYQTYIGAMNENIKRVFRERMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
A + P+ F+++ + +I+ F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 323 DAAGANSATAGPWNFRYVRSVKNIERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------PLNMQVHYI 403
++ GY VEGT+ K I++EP+++ +M+G A P V I
Sbjct: 383 GIIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMTGGDEEQKVMIPRRCTVDEI 442
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQ 461
SF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ AD K+ TP NC+
Sbjct: 443 SFAAHVDGVENREFIEEVGAPVVILVHGEKHQMMRLKSKLLSLNADKKVKVKVFTPANCE 502
Query: 462 SVEMYFNSEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLST 517
V + F +KMAK +GRLAE+ P E+ S G+LV+ GF +MAP+DL ++ L+T
Sbjct: 503 EVRIPFQVDKMAKVVGRLAERPPPADESESRLMNGVLVQNGFKLSLMAPEDLREYAGLAT 562
Query: 518 ANIT--QRIT 525
IT Q IT
Sbjct: 563 TTITCKQHIT 572
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/545 (48%), Positives = 354/545 (64%), Gaps = 40/545 (7%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L T LG GNEVGRSC + YKGKT++ D G+H Y G+AALP++D+ D S +D+LL
Sbjct: 21 ADELTFTNLGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYDGLAALPFYDDFDLSTVDLLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---LFDE 137
I+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V S ++ E
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIIDSVRVGGASSGGGSQPVYTE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSRE+D
Sbjct: 141 ADHLTTFAQIEAIDYHTTHTISSIRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDD 200
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I ESTYG+ H PR RE+ + S +++GGRVL+P FALG
Sbjct: 201 RHLVSAEVPKGVKIDVLITESTYGIASHIPRLEREQALMKSVTSILNRGGRVLMPVFALG 260
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPEF IPIYYAS LA+KCM VYQTY+ SMNE I+ F
Sbjct: 261 RAQELLLILDEYWGKHPEFQKIPIYYASNLARKCMLVYQTYVGSMNENIKRLFRERMAEA 320
Query: 310 -ANS------NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
ANS P+ FK+I L ++D F DVG V++ASPG LQ+G+SRQL + W KN
Sbjct: 321 EANSTSGGRGGPWDFKYIRSLKNLDRFDDVGGCVILASPGMLQNGISRQLLERWAPSDKN 380
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFS 406
+I GY VEGT+AK I+ EP + +M+G P V SF+
Sbjct: 381 GVIITGYSVEGTMAKQIMQEPDHIQAIMSGPQGFTRRSAPGETEKAMIPRRCSVQEYSFA 440
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT--KIITPKNCQSVE 464
AH D + F++E+ P +ILVHGE H M RLK+KL++ AD T K+ +PKNC+ +
Sbjct: 441 AHVDGVENREFIEEIAAPVVILVHGEQHNMMRLKSKLLSLNADKTTKVKVFSPKNCEPLR 500
Query: 465 MYFNSEKMAKTIGRLAEKTP--EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT- 521
+ F + K AK +G+LA P + + ++G+LV+ F +MAP+DL ++ L+T IT
Sbjct: 501 IPFMTSKTAKVVGKLANNPPPTDSAQLITGVLVQNDFKMSLMAPEDLREYAGLTTTTITC 560
Query: 522 -QRIT 525
QR+T
Sbjct: 561 KQRMT 565
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 251/505 (49%), Positives = 347/505 (68%), Gaps = 6/505 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ + P+G+G EVGRSCV + YKG+ ++ DCG HPA SG+ +LP+FD I IDV+LI
Sbjct: 24 DEVEVLPIGSGGEVGRSCVVVHYKGRGVMLDCGNHPAKSGLDSLPFFDSIKCDEIDVVLI 83
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDH +LPYF +T+FKGRVFMT ATKA YK+++ D++++ D++ E +
Sbjct: 84 THFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDFLRIG-AGASDLVTSEW-LQ 141
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
++D+IE +++H+ V VNGI F + AGHVLGAAMFMVDIAG+R LYTGD+SR DRHL
Sbjct: 142 STIDRIETIEYHEEVTVNGISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVPDRHLL 201
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AE+P +SPDI I EST G++ + R RE FT +H + +GGR L+P FALGRAQEL
Sbjct: 202 GAEVPPYSPDILIAESTNGIRELESREEREHLFTSSVHDVVRRGGRCLVPVFALGRAQEL 261
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFKHI 320
LLIL+E+W H E NIPIYYAS LA++CM +YQT++ +MN+R++ Q AN NPF FK+I
Sbjct: 262 LLILEEFWDAHKELQNIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQHANHHNPFVFKYI 321
Query: 321 SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
L F D GP VV+ASPG LQSG+S +LF+ WC D++N ++ GY V+GT+AK ++
Sbjct: 322 HSLIDTKSFEDNGPCVVLASPGMLQSGISLELFERWCGDRRNGIIMAGYCVDGTIAKDVL 381
Query: 381 SEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKELMP-PNIILVHGESHEMGR 438
++PKEV +G PL M + +SFSAH+D QT F+ L + ILVHG MG+
Sbjct: 382 AKPKEVAKPDGKVLPLRMSTIEAVSFSAHSDGRQTRDFIHHLTKVKHTILVHGNPGAMGQ 441
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
LK KL+ + D N + T N +S+ + F E+ AK +G+LA + GE VSG+++ G
Sbjct: 442 LKNKLLQDFRDRNMSVYTTMNQESIRIPFVQERTAKVMGKLANMSLRAGEFVSGVMLVSG 501
Query: 499 -FTYQIMAPDDLHIFSQLSTANITQ 522
Y I+ PDD+ +F+ LS + Q
Sbjct: 502 QHQYSIVHPDDVPVFTDLSVNRVQQ 526
>gi|407411604|gb|EKF33594.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 763
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 254/517 (49%), Positives = 359/517 (69%), Gaps = 9/517 (1%)
Query: 13 RDAPV---SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
RD+ V + D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD
Sbjct: 25 RDSDVPAAASSSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFFD 84
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I ID++LITHFHLDH +LPYF E+T FKGRVFMT ATKA YK+++ D+++V S
Sbjct: 85 SIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-AS 143
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
D++ +E + +++KIE +++H+ V VNGI+F + AGHVLGAA+FMVDIAG++ LYT
Sbjct: 144 ANDIVTNEW-LQSTIEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLYT 202
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + GGR L
Sbjct: 203 GDFSRVPDRHLLGAEVPSYSPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRCL 262
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q
Sbjct: 263 VPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQH 322
Query: 310 AN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N +I G
Sbjct: 323 ANHRNPFVFKYIHSLMETRSFEDTGPCVVLASPGMLQSGISLELFERWCGDRRNGIIIAG 382
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPPNI 426
Y V+GT+AK I+++PKEVT +G PL M+ + +SFSAH+D QT F++ L ++
Sbjct: 383 YCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQHV 442
Query: 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
ILVHG MG+L+ KL + A+ K+ + +N +++ + F+ ++ AK +G LA
Sbjct: 443 ILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIPFSVQRTAKVMGVLANSPARN 502
Query: 487 GETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG L+ G +Y I+ P ++ +F+ L+ A I Q
Sbjct: 503 GEFVSGALLVSGQHSYSIVHPTEIPLFTDLNVAQIQQ 539
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/454 (52%), Positives = 322/454 (70%), Gaps = 2/454 (0%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I PLGAG+EVGRSCV ++G T++FDCG+HPAY+G+++LP+FD IDP+ IDV+L+THFH
Sbjct: 12 ILPLGAGSEVGRSCVVTKFRGVTVMFDCGVHPAYTGVSSLPFFDLIDPAEIDVILVTHFH 71
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDHA +LPYF E++ FKG+++MTH T+AI++ LL DYV+VS VS E+ LF E+++ + D
Sbjct: 72 LDHAGALPYFTERSGFKGKIYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKELAQCYD 131
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
KI +D+ Q + + I Y AGHVLGAAMF+V + +LYTGDYSREEDRHL+AA +
Sbjct: 132 KIIPIDYGQEIPLKNITIIAYNAGHVLGAAMFLVKNEDISLLYTGDYSREEDRHLKAAVI 191
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P DI I ESTYGVQ HQ + RE RF + + +GG+ L+P FALGRAQELLLIL
Sbjct: 192 PPMPIDILISESTYGVQCHQSKEERETRFITGVSDVVKRGGKCLLPVFALGRAQELLLIL 251
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS 325
DE+W + + IPI YAS LAK+ MAVYQTY+ MN+RI+ SNPF FKH+ + +
Sbjct: 252 DEFWDSRKDLQGIPILYASALAKRFMAVYQTYLNMMNDRIQGMAEISNPFHFKHVQSIKN 311
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I+ + D GP V+MASPG LQ+GLSR LF++WC DK+N C+IPGY VEGTLAK ++ EP E
Sbjct: 312 IEAYEDRGPCVMMASPGMLQNGLSRDLFEMWCGDKRNGCIIPGYCVEGTLAKDLLCEPDE 371
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM- 444
+T + G + + YISFSAH D+ Q + F++ ++LVHGES EM RLK+ L+
Sbjct: 372 ITSLKGNKLVVRSSIDYISFSAHVDFLQNAEFIEGCKVSEVVLVHGESSEMNRLKSALVH 431
Query: 445 -TELADCNTKIITPKNCQSVEMYFNSEKMAKTIG 477
+E N + TP+N + V++ E K +G
Sbjct: 432 RSESKSENMVVHTPRNGEWVQIKGTGEINVKYLG 465
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/571 (45%), Positives = 359/571 (62%), Gaps = 68/571 (11%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D T LG NEVGRSC + YK K I+ D G+HP SG+ +LP++DE D S +D+LL+
Sbjct: 8 DDFKFTGLGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLSGLNSLPFYDEYDLSKVDLLLV 67
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-----------V 130
+HFHLDHAASLPY ++ T F+GRVFMTHATKAIY+ LLTD+V+V+ +S
Sbjct: 68 SHFHLDHAASLPYVMQHTNFRGRVFMTHATKAIYRWLLTDFVRVTSLSSNTSNDPNSGGT 127
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ ++D+ +S D+IE +DFH T+E++GI+F Y AGHVLGA +++++I G++ L+TG
Sbjct: 128 SANLYTDEDLMKSFDRIETVDFHSTMELDGIRFTAYHAGHVLGACLYLIEIGGLKALFTG 187
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSREE+RHL AE+P PDI I EST+G H+PR +E R T +IHST+S+GGRVL+
Sbjct: 188 DYSREENRHLPVAEVPSVKPDILITESTFGTATHEPRMEKENRMTRIIHSTLSKGGRVLM 247
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P FALG AQELLLIL+EYWS + + NI +Y+AS LA+KC+AVYQTY MN++IR+ +
Sbjct: 248 PVFALGTAQELLLILEEYWSQNKDLQNIDVYFASSLARKCLAVYQTYTNIMNDKIRSMAS 307
Query: 311 NS-----NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+S NPF FK+I L S+D F D GPSVV+ASPG LQSG SRQL + W D KN +
Sbjct: 308 SSSYDRKNPFTFKYIKTLKSLDRFQDFGPSVVIASPGMLQSGFSRQLLEKWAPDPKNTVL 367
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
+ GY VEGT+AK ++ EP + +N +T + + ISF+AH D+ Q + F+ E+
Sbjct: 368 MTGYSVEGTMAKDLLIEPPTIPSVNNPEMTITRRLSIEEISFAAHVDFQQNAEFIGEVNA 427
Query: 424 PNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGR 478
P IILVHG+S MGRLK+ L+++ A D K+ P+N +++ K+AK +G
Sbjct: 428 PRIILVHGDSIPMGRLKSALLSKYANRKGTDQEVKVFNPRNGDELKIAIKGLKVAKVLGA 487
Query: 479 LA-----------------EKTPEVGET----------------------------VSGI 493
LA + T E E +SG+
Sbjct: 488 LAEEQIGAEEEEEEKDEDMKDTTEEKENGNKTEDSENHEDDKQEDDDFEVFKSKQVLSGV 547
Query: 494 LVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
+V K F I+ DLH +SQL+T+ + +I
Sbjct: 548 IVSKDFDLNIVQLQDLHEYSQLATSIVKSKI 578
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/498 (49%), Positives = 337/498 (67%), Gaps = 29/498 (5%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D + + D LG NEVGRSC + YK + I+ D G+HP G+ +LP++DE D
Sbjct: 4 DEQNTDDSDDFKFFGLGGCNEVGRSCHVIEYKNRVIMLDAGVHPGLQGLNSLPFYDEYDL 63
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV----- 128
S +D+LLI+HFHLDHAASLPY ++ T FKGRVFMTHATKAIY+ LL+D+VKV+ +
Sbjct: 64 SKVDILLISHFHLDHAASLPYVMQHTNFKGRVFMTHATKAIYRWLLSDFVKVTSIGGGGD 123
Query: 129 -----------SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMF 177
+ L+ + D+ RS D+IE +D+H T+EV+GI+F Y AGHVLGA M+
Sbjct: 124 PRMNNDDSSLNTSSGNLYTDDDLMRSFDRIETIDYHSTIEVDGIRFTAYHAGHVLGACMY 183
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+++I G++VL+TGD+S EEDRHL+ AE+P PDI I EST+G H+PR +E R T +
Sbjct: 184 LIEIGGLKVLFTGDFSCEEDRHLQVAEIPPVKPDILISESTFGTATHEPRLEKEARMTSI 243
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
IHST+ +GGR+L+P FALGRAQELLLIL+EYW + + HNI IY+AS LA+KCMAVYQTY
Sbjct: 244 IHSTLLKGGRILMPVFALGRAQELLLILEEYWGLNDDLHNINIYFASSLARKCMAVYQTY 303
Query: 298 ILSMNERIR------NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQ 351
MN+ IR N NPF+FK+I + S+D F D GP VV+ASPG LQ+G+SR+
Sbjct: 304 TNIMNDSIRLSTSSTNSGEKRNPFQFKYIKNIRSLDKFQDFGPCVVVASPGMLQNGVSRE 363
Query: 352 LFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHA 409
L + W D +NA ++ GY VEGT+AK +++EP + +T P + V ISF+AH
Sbjct: 364 LLERWAPDPRNAVIMTGYSVEGTMAKELLTEPPTIQSATNADVTIPRRINVEEISFAAHV 423
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVE 464
D+ Q S F++++ P IILVHGES+ MGRLK+ L+++ A D K+ P+NC ++
Sbjct: 424 DFQQNSNFIEQINPSKIILVHGESNPMGRLKSALLSKYASRKGTDEEVKVFNPRNCDEIK 483
Query: 465 MYFNSEKMAKTIGRLAEK 482
+ S K+AK +G LAE+
Sbjct: 484 IPIQSMKVAKVLGGLAEE 501
>gi|255724858|ref|XP_002547358.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
gi|240135249|gb|EER34803.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
Length = 783
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 253/569 (44%), Positives = 355/569 (62%), Gaps = 72/569 (12%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ DCG+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDCGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 77
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE----------DMLFDEQ 138
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + L+ +
Sbjct: 78 SASLPYIMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGSSRAEAGGKDEGSNLYTDD 137
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDYSREE+R
Sbjct: 138 DIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENR 197
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +PR E++ T IH+T+++GGRVL+P FALG A
Sbjct: 198 HLHAAEVPPLKPDILISESTFGTGTLEPRVELERKLTTHIHATVTKGGRVLLPVFALGNA 257
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR---NQFANSNPF 315
QELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR + SNPF
Sbjct: 258 QELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSSSGEKSNPF 317
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
K I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 318 DLKFIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDNKNLVILTGYSVEGTM 377
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + LT P + + ISF+AH D+ Q S F+ ++ P IILVHG+S
Sbjct: 378 AKELLKEPTMIQSATNPDLTIPRRIGIEEISFAAHVDFQQNSEFIDKVSPSKIILVHGDS 437
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV-- 486
MGRLK+ L+++ + D K+ PKNC+ +++ F K+AK +G LAE+ ++
Sbjct: 438 VPMGRLKSALLSKYSARKGTDQEVKVYNPKNCEELKIGFKGLKVAKVLGSLAEEQIQILK 497
Query: 487 --------------------------------------------------GETVSGILVK 496
G+ VSG+LV
Sbjct: 498 KVIQDKVEDENNKIVELDEDGDDMEVDSNKKEEDIVNSSTAAAAVDVLRTGQAVSGVLVS 557
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQRIT 525
K F ++ DLH F+QLST+ + +I
Sbjct: 558 KDFDLNLVQLQDLHEFTQLSTSIVKSKIN 586
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/552 (47%), Positives = 354/552 (64%), Gaps = 45/552 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ +IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLSQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE P+ D+ I EST+GV + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYWS HPE IPIYY +A++CM VYQTYI +MNE I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + + SI+ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------P 395
W ++N ++ GY VEGT+ K I++EP+++ +M+G A P
Sbjct: 375 RWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMAAGDDEQKVMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE ++M RLK+KL++ AD K
Sbjct: 435 RRCTVDEISFAAHVDGMENREFIEEVAAPVVILVHGEKNQMMRLKSKLLSLNADKTVKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC+ V + F +K+AK +GRLAE +P ++G+LV+ GF +MAP+DL
Sbjct: 495 VYTPANCEEVRIPFQVDKVAKVVGRLAESSPPSDHNESRIMNGVLVQNGFKLSLMAPEDL 554
Query: 510 HIFSQLSTANIT 521
++ L+T IT
Sbjct: 555 REYAGLATTTIT 566
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/483 (50%), Positives = 334/483 (69%), Gaps = 29/483 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HP G+++LP++DE D S +D+LL++HFHLDH
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLSKVDILLVSHFHLDH 78
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV----------------SVED 132
AASLPY ++ T F GRVFMTHATKAIY+ LL+D+VKV+ + +
Sbjct: 79 AASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDPNANTGSS 138
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
L+ + D+ RS D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDY
Sbjct: 139 NLYTDDDLMRSFDRIETIDYHSTIELDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 198
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
S EEDRHL+ AE+P PDI I EST+G H+PR +E R T++IHST+ +GGR+L+P
Sbjct: 199 SSEEDRHLQVAEVPPIKPDILITESTFGTATHEPRLEKETRMTNIIHSTLLKGGRILMPV 258
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR------ 306
FALGRAQELLLIL+EYWS + + NI IYYAS LA+KCMAVYQTY MN+ IR
Sbjct: 259 FALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCMAVYQTYTNIMNDSIRLTTSAT 318
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
N NPF+FK I + ++D F D GP VV+ASPG LQ+G+SR+L + W D KNA ++
Sbjct: 319 NSSKKQNPFQFKFIKSIKNLDKFQDFGPCVVVASPGMLQNGVSRELLERWAPDPKNAVIM 378
Query: 367 PGYVVEGTLAKTIISEPKEV-TLMNG-LTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
GY VEGT+AK +++EP + + MN +T P + + ISF+AH D+ Q ++F++++ P
Sbjct: 379 TGYSVEGTMAKDLLTEPHTIQSAMNSDMTIPRRLSIEEISFAAHVDFQQNASFIEKVNPS 438
Query: 425 NIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRL 479
IILVHGES+ MGRLK+ L+++ A + K+ P+NC V + K+AK +G L
Sbjct: 439 KIILVHGESNPMGRLKSALLSKYASRKGTEQEVKVFNPRNCDEVTIGIKGLKVAKVLGTL 498
Query: 480 AEK 482
AE+
Sbjct: 499 AEE 501
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 239/454 (52%), Positives = 321/454 (70%), Gaps = 2/454 (0%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I PLGAG+EVGRSCV ++G T++FDCG+HPAY+G+++LP+FD IDP+ +DV+L+THFH
Sbjct: 12 ILPLGAGSEVGRSCVVTKFQGVTVMFDCGVHPAYTGISSLPFFDLIDPTEVDVILVTHFH 71
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDHA +LPYF E++ FKG+V+MTH T+AI++ LL DYV+VS VS E+ LF E+++++ D
Sbjct: 72 LDHAGALPYFTERSGFKGKVYMTHPTRAIFRWLLNDYVRVSNVSSENDLFTEKELSQCYD 131
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+I +D+ Q + + I Y AGHVLGAAMF+V + +LYTGDYSREEDRHL+AA +
Sbjct: 132 RIIPIDYGQEITLKNITIIAYNAGHVLGAAMFLVKNENISLLYTGDYSREEDRHLKAAVI 191
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P DI I ESTYGVQ HQ + RE RF + + +GG+ L+P FALGRAQELLLIL
Sbjct: 192 PPMPIDILISESTYGVQCHQSKEEREHRFITGVSDVVKRGGKCLLPVFALGRAQELLLIL 251
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS 325
DE+W + IPI YAS LAK+ MAVYQTY+ MN+RI+ SNPF FKH+ + +
Sbjct: 252 DEFWEARKDLQGIPILYASALAKRFMAVYQTYLNMMNDRIQGMAEISNPFHFKHVQNIKN 311
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I+ + D GP V+MASPG LQ+GLSR LF++WC DK+N C+IPGY VEGTLAK ++ EP E
Sbjct: 312 IEAYEDRGPCVMMASPGMLQNGLSRDLFEMWCGDKRNGCIIPGYCVEGTLAKDLLCEPDE 371
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM- 444
+T + G + + YISFSAH D+ Q + F++ ++LVHGES EM RLK+ L+
Sbjct: 372 ITSLKGNKLVVRSSIDYISFSAHVDFLQNAEFIEGCKVSEVVLVHGESSEMNRLKSALVH 431
Query: 445 -TELADCNTKIITPKNCQSVEMYFNSEKMAKTIG 477
+E N I TP+N + V + E K +G
Sbjct: 432 RSEAKSENITIHTPRNGEWVHIKGTGELNVKYLG 465
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 261/552 (47%), Positives = 354/552 (64%), Gaps = 45/552 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ +IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLSQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE P+ D+ I EST+GV + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYWS HPE IPIYY +A++CM VYQTYI +MNE I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + + SI+ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------P 395
W ++N ++ GY VEGT+ K I++EP+++ +M+G A P
Sbjct: 375 RWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMAAGDDEQKVMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE ++M RLK+KL++ AD K
Sbjct: 435 RRCTVDEISFAAHVDGMENREFIEEVAAPVVILVHGEKNQMMRLKSKLLSLNADKTVKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC+ V + F +K+AK +GRLAE +P ++G+LV+ GF +MAP+DL
Sbjct: 495 VYTPANCEEVRIPFQVDKVAKVVGRLAESSPPSDHNESRIMNGVLVQNGFKLSLMAPEDL 554
Query: 510 HIFSQLSTANIT 521
++ L+T IT
Sbjct: 555 REYAGLATTTIT 566
>gi|344302811|gb|EGW33085.1| hypothetical protein SPAPADRAFT_66091 [Spathaspora passalidarum
NRRL Y-27907]
Length = 762
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/558 (46%), Positives = 358/558 (64%), Gaps = 62/558 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D GIHPA +G ++ P++DE D S +D+LLI+HFHLDH
Sbjct: 17 LGGCNEVGRSCHIIEYKNKVIMLDAGIHPALTGHSSFPFYDEYDLSKVDILLISHFHLDH 76
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------LFDEQD 139
AASLPY +++TTFKGRVFMT ATKAIY+ LL D+V+V+ + M L+ D
Sbjct: 77 AASLPYVMQQTTFKGRVFMTQATKAIYRWLLQDFVRVTSIGTTKMEGGEGQSSNLYTADD 136
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
I +S D+IE +D+H T+E+ GIKF Y AGHVLGA M+ ++I G++VL+TGDYSREE+RH
Sbjct: 137 IMKSFDRIETIDYHSTMEIEGIKFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENRH 196
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AAE+P PDI I EST+G + + EK+ T+ IH+T+++GGRVL+P FALG Q
Sbjct: 197 LHAAEIPPVKPDILISESTFGTGTLESKADLEKKLTNHIHATLTKGGRVLLPVFALGNTQ 256
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN----SNPF 315
ELLLILDEYW+N+ + NI +YYAS LAKKCMAVY+TY MN++IR ++ SNPF
Sbjct: 257 ELLLILDEYWNNNEDLQNINVYYASSLAKKCMAVYETYTSIMNDKIRLSASSSGHKSNPF 316
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 317 DFKYIKSIRDLGKFQDMGPSVVIAAPGMLQAGISRQLLEKWAPDPKNLVILTGYSVEGTM 376
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + +N +T P + + ISF+AH D+ Q S F++++ P IILVHG+S
Sbjct: 377 AKELLKEPHTIQSVNNPEMTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKIILVHGDS 436
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK------ 482
MGRLK+ L+++ + + K+ PKNC+ V++ F K+AK +G LAE+
Sbjct: 437 VPMGRLKSALLSKYSSRKGTEQEVKVFNPKNCEEVKIGFKGLKVAKVLGSLAEEQLSMLK 496
Query: 483 ------------------------------------TPEVGETVSGILVKKGFTYQIMAP 506
T G+ +SG+LV K F ++
Sbjct: 497 KEIETKIETENEKIVEIKEEMEVDANDGDKNEAGVDTLHTGQFLSGVLVSKDFDLNLLQL 556
Query: 507 DDLHIFSQLSTANITQRI 524
DLH F+QLST+ + ++
Sbjct: 557 QDLHEFTQLSTSFVKSKM 574
>gi|269860830|ref|XP_002650133.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
gi|220066453|gb|EED43934.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
Length = 657
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 247/499 (49%), Positives = 324/499 (64%), Gaps = 16/499 (3%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
S DQ+ I PLGAG+EVGRSC+++ Y+ K L DCG+HPAY+G++ LP+ D I+ ID
Sbjct: 4 SNHKDQISIKPLGAGSEVGRSCIHIKYQEKQFLMDCGVHPAYTGVSCLPFLDLINLEEID 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+ ITHFHLDHAA+LP+ EKT FKG+V+MTH TKAI K LL DY+++ + ++ + E
Sbjct: 64 AVFITHFHLDHAAALPFLTEKTAFKGKVYMTHPTKAILKWLLNDYIRIINSASDEDFYTE 123
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+D+ +KI +D+HQ ++V GIKF AGHVLGAAMF+++I ++LYTGD+SRE+D
Sbjct: 124 KDLENCYNKIIPIDYHQVIDVVGIKFTALNAGHVLGAAMFLLEIGQTKLLYTGDFSREDD 183
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL++AE P DI I ESTYG Q H PR RE RFT V+ + +GG+ L+P FALGR
Sbjct: 184 RHLKSAETPNCKLDILITESTYGTQCHLPRIERENRFTKVVSDVVERGGKCLLPVFALGR 243
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW +P IPI+YAS LAKKCM +YQTY+ MNER++ NPF F
Sbjct: 244 AQELLLILDEYWEENPHLKKIPIFYASALAKKCMGIYQTYVNMMNERMQKLNLTRNPFDF 303
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
K++ + D GP V+MASPG LQSG+SR +F+ WCSD KN VI GY VEGTLAK
Sbjct: 304 KNVENIKDAKTVRDGGPCVIMASPGMLQSGVSRDIFERWCSDSKNGVVIAGYCVEGTLAK 363
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
++ EPKE+ G LNM V YISFSAH DY Q + F+ MP + VHGE+ EMG
Sbjct: 364 EVLKEPKEIESHRGQLLKLNMTVEYISFSAHVDYTQNAEFIYTCMPNYLFFVHGEATEMG 423
Query: 438 RLKTKLMTELADCNTK--IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
RLK + + N + I T KN + + ++ K + GILV
Sbjct: 424 RLKQSIQNKNEKNNIQMAIYTLKNGEEALIKIKNQNECKLY------CTNDADEFDGILV 477
Query: 496 KKGFTYQIMAPDDLHIFSQ 514
K+G +D+ IF+Q
Sbjct: 478 KEG--------NDIKIFNQ 488
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/550 (47%), Positives = 350/550 (63%), Gaps = 46/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 25 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 84
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---LFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 85 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQ 144
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DR
Sbjct: 145 DHLNTFSQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDR 204
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGR L+P FALGR
Sbjct: 205 HLVSAEVPKDVKIDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGR 264
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW HPEF PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 265 AQELLLILDEYWGKHPEFQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAE 324
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK+I L ++D F DVG V++ASPG LQSG+SR+LF+ W ++KN
Sbjct: 325 ASGDGAGQGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQSGVSRELFERWAPNEKNG 384
Query: 364 CVIPGYVVEGTLAKTIISEPKEV------TLMNGLTA----------PLNMQVHYISFSA 407
+I GY VEGT+A+ I+ EP ++ L G A P V SF+A
Sbjct: 385 VIITGYSVEGTMARQIMQEPDQIPAVMSRNLAAGRRAPGGESERVLIPRRCSVAEYSFAA 444
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT--KIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A T K+ +P+NC+ + +
Sbjct: 445 HVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTTKVKVYSPRNCEELRI 504
Query: 466 YFNSEKMAKTIGRLAEKTP--------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLST 517
F +KMAK +G+LA P V+G+LV+ F +MAP+DL ++ L+T
Sbjct: 505 PFKGDKMAKVVGKLASIPPPQDVNVDSASAPLVTGVLVQNDFKLSLMAPEDLREYAGLNT 564
Query: 518 ANIT--QRIT 525
IT QR+T
Sbjct: 565 TTITCKQRLT 574
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/559 (47%), Positives = 357/559 (63%), Gaps = 48/559 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F+GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE P+ D+ I EST+GV + PR RE I S +++GGRV
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYWS HPE IPIYY +A++CM VYQTYI +MNE I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 309 FA--------------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + + SI+ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------- 394
W +++N ++ GY VEGT+ K I++EP+++ +M+G A
Sbjct: 375 RWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMATGDDDEQKVMI 434
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKI 454
P V ISF+AH D + F++E+ P +ILVHGE ++M RLK+KL++ D KI
Sbjct: 435 PRRCSVDEISFAAHVDGMENRAFIEEVGAPVVILVHGEKNQMMRLKSKLLSLNTDKTVKI 494
Query: 455 --ITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET----VSGILVKKGFTYQIMAPDD 508
TP NC+ V + F +K+AK +GRLAE P G ++G+LV+ GF +MAP+D
Sbjct: 495 KVYTPANCEEVRIPFQVDKVAKVVGRLAETVPPSGHKESRLLNGVLVQHGFKLSLMAPED 554
Query: 509 LHIFSQLSTANIT--QRIT 525
L ++ L+T +T Q IT
Sbjct: 555 LREYAGLATTTVTCKQHIT 573
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 249/559 (44%), Positives = 361/559 (64%), Gaps = 62/559 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LL++HFH+DH
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDLSKVDILLVSHFHVDH 78
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-----------VEDMLFDE 137
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + L+ +
Sbjct: 79 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRTEGGGGNDEGGNLYTD 138
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
DI +S D+IE +DFH T+EV+GI+F Y AGHVLGA M++++I G++VL+TGDYSREE+
Sbjct: 139 DDIFKSFDRIETIDFHSTMEVDGIRFTAYYAGHVLGACMYLIEIGGLKVLFTGDYSREEN 198
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL +AE+P PD+ I EST+G +P+ EK+ T+ IH+TI++GGRVL+P FALG
Sbjct: 199 RHLPSAEVPPVKPDVLITESTFGTGTLEPKAELEKKLTNHIHATITKGGRVLLPVFALGN 258
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR----NQFANSN 313
AQELLLILDEYW + + N+ +YY S LA+KCMAVY+TY MN++IR + + SN
Sbjct: 259 AQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYETYTGIMNDKIRLSSSSDDSKSN 318
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF FK+I + ++ FSD+GPSVV+A+PG LQ+G+SRQL + W ++KN ++ GY VEG
Sbjct: 319 PFDFKYIKSIRNLSKFSDLGPSVVVATPGMLQAGVSRQLLEKWAPEQKNLVILTGYSVEG 378
Query: 374 TLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
T+AK ++ EP+ + +N L+ P + + ISF+AH D+ Q S F+ ++ P IILVHG
Sbjct: 379 TMAKDLLKEPQVIQSLNNPDLSIPRRIGIEEISFAAHVDFQQNSEFIDKVSPSRIILVHG 438
Query: 432 ESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE----- 481
+S MGRLK+ L+++ + D K+ P+NC+ + + F K+AK +G LAE
Sbjct: 439 DSVPMGRLKSALLSKYSSRKGTDKEVKVFNPRNCEELNIAFKGLKIAKVLGSLAEAQLQA 498
Query: 482 -----------------------------------KTPEVGETVSGILVKKGFTYQIMAP 506
T + G+ VSG+LV K F ++
Sbjct: 499 LKQEIEEKITEADDATEDVKMEGGDDSKEQVNGTSNTFQPGQIVSGVLVSKDFELDLVQL 558
Query: 507 DDLHIFSQLSTANITQRIT 525
DL+ F+QLST+ + ++
Sbjct: 559 QDLNEFTQLSTSIVKSKMN 577
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/559 (46%), Positives = 357/559 (63%), Gaps = 48/559 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F+GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE P+ D+ I EST+GV + PR RE I S +++GGRV
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYWS HPE IPIYY +A++CM VYQTYI +MNE I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 309 FA--------------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + + SI+ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------- 394
W +++N ++ GY VEGT+ K I++EP+++ +M+G A
Sbjct: 375 RWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMATGDDDEQKVMI 434
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNT 452
P V ISF+AH D + F++E+ P +ILVHGE ++M RLK+KL++ D
Sbjct: 435 PRRCSVDEISFAAHVDGMENRAFIEEVGAPVVILVHGEKNQMMRLKSKLLSLNTDKTVKV 494
Query: 453 KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDD 508
K+ TP NC+ V + F +K+AK +GRLAE P + ++G+LV+ GF +MAP+D
Sbjct: 495 KVYTPANCEEVRIPFQVDKVAKVVGRLAETVPPSDHKESRLLNGVLVQHGFKLSLMAPED 554
Query: 509 LHIFSQLSTANIT--QRIT 525
L ++ L+T +T Q IT
Sbjct: 555 LREYAGLATTTVTCKQHIT 573
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 254/555 (45%), Positives = 355/555 (63%), Gaps = 52/555 (9%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L LG G+EVGRSC + YKGKT++ D G+HPAY G+++LP++D+ D S +D+LLI
Sbjct: 19 DMLSFICLGGGSEVGRSCHIVQYKGKTVMLDAGVHPAYDGISSLPFYDDFDLSTVDILLI 78
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQD 139
+HFHLDHA SLPY L KT F+GRVFMTH TKAIYK L++D V+VS + E LF E D
Sbjct: 79 SHFHLDHAGSLPYVLTKTNFRGRVFMTHPTKAIYKWLMSDSVRVSNTTSEQTTQLFSETD 138
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
S +I +D++QT+ + I Y AGHVLGAAMF+++IAG+++L+TGDYSRE+DRH
Sbjct: 139 HLSSFSQISAIDYYQTLHHSSIAITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREDDRH 198
Query: 200 LRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
L +A LP+ PDI I ESTYG H PR +E RF ++ S + +GGRVL+P FALGRA
Sbjct: 199 LVSASLPKHIKPDILITESTYGTASHMPRPEKEARFISLVTSILDRGGRVLMPVFALGRA 258
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--------- 309
QELLLIL+EYW H + PIYYAS LA++CM+VYQTYI +MN+ I+ F
Sbjct: 259 QELLLILEEYWEVHERYRQYPIYYASSLARRCMSVYQTYIHAMNDNIKALFRSKMAAIGE 318
Query: 310 ---------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
+NPF+ + + L S+D F DVG V++A+PG +Q+G+SR+L + WC D
Sbjct: 319 AAGKDGQVIGGTNPFEMRWVRSLKSLDRFDDVGGCVMLAAPGMMQNGVSRELLERWCPDP 378
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLM--------------NGLTAPLNMQVHYISFS 406
KN ++ GY VEGTLAK+I++EP E+ + + P + +SF+
Sbjct: 379 KNGVILTGYSVEGTLAKSILNEPTEIQAFKKEHTSRRSGREEADRVMIPRRCSIDELSFA 438
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTK--IITPKNCQSVE 464
AH DY Q S+F++E+ IILVHGE++ MGRLK+ L+++ D K I PKNC+ +
Sbjct: 439 AHVDYGQNSSFIEEVGAKVIILVHGETNAMGRLKSALLSKYHDRKDKPRIYNPKNCEELN 498
Query: 465 MYFNSEKMAKTIGRLAEKTPEVGETV-------------SGILVKKGFTYQIMAPDDLHI 511
+ F EK+A +G+LA+ P + V +G+LV+ F +M+PDDL
Sbjct: 499 IPFKGEKIANVVGKLAKHPPHPSKDVDKALVKTGQEQIFAGVLVQNDFKLSLMSPDDLRE 558
Query: 512 FSQLSTANI--TQRI 524
++ L+T + QR+
Sbjct: 559 YAGLTTTTVMCKQRV 573
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/541 (47%), Positives = 349/541 (64%), Gaps = 41/541 (7%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 24 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 84 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 143
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++GI+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DR
Sbjct: 144 DHLNTFPQIEAIDYHTTHTISGIRVTPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDR 203
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +A++P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALGR
Sbjct: 204 HLVSAQVPRGVKIDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGR 263
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW H E+ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 264 AQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAE 323
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK I L SID F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 324 ASGDGAGKGGPWDFKFIRSLKSIDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 383
Query: 364 CVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP+ + +M+ T P V SF+A
Sbjct: 384 VIITGYSVEGTMAKQIMQEPEHIQAVMSRNTGGGRRGPGRDAEKVLIPRRCTVQEYSFAA 443
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +PKNC+ + +
Sbjct: 444 HVDGTENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNANKTSKVKVFSPKNCEELRI 503
Query: 466 YFNSEKMAKTIGRLAE-----KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANI 520
F ++K AK +G+LA +PE + ++G+LV+ F +MAP+DL F+ L+T I
Sbjct: 504 PFKTDKTAKVVGKLASILQPLSSPEEPQLITGVLVQNDFKMSLMAPEDLREFAGLTTTTI 563
Query: 521 T 521
+
Sbjct: 564 S 564
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust.
Identities = 260/550 (47%), Positives = 349/550 (63%), Gaps = 46/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 25 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 84
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---LFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 85 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTEQ 144
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DR
Sbjct: 145 DHLNTFSQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDR 204
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGR L+P FALGR
Sbjct: 205 HLVSAEVPKDVKIDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGR 264
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW HPEF PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 265 AQELLLILDEYWGKHPEFQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFRERMAEAE 324
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK+I L ++D F DVG V++ASPG LQSG+SR+LF+ W +KN
Sbjct: 325 ASGDGAGQGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQSGVSRELFERWAPSEKNG 384
Query: 364 CVIPGYVVEGTLAKTIISEPKEV------TLMNGLTA----------PLNMQVHYISFSA 407
+I GY VEGT+A+ I+ EP ++ L G A P V SF+A
Sbjct: 385 VIITGYSVEGTMARQIMQEPDQIPAVMSRNLAAGRRAPGGESERVLIPRRCSVAEYSFAA 444
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT--KIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A T K+ +P+NC+ + +
Sbjct: 445 HVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNASKTTKVKVYSPRNCEELRI 504
Query: 466 YFNSEKMAKTIGRLAEKTP--------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLST 517
F +KMAK +G+LA P V+G+LV+ F +MAP+DL ++ L+T
Sbjct: 505 PFKGDKMAKVVGKLASIPPPQDVNVDSASAPLVTGVLVQNDFKLSLMAPEDLREYAGLNT 564
Query: 518 ANIT--QRIT 525
IT QR+T
Sbjct: 565 TTITCKQRLT 574
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/559 (46%), Positives = 357/559 (63%), Gaps = 48/559 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F+GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE P+ D+ I EST+GV + PR RE I S +++GGRV
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPRLEREAALIKSITSILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYWS HPE IPIYY +A++CM VYQTYI +MNE I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTYIGAMNENIKRL 314
Query: 309 FA--------------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + + SI+ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSVRSIERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------- 394
W +++N ++ GY VEGT+ K I++EP+++ +M+G A
Sbjct: 375 RWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMATGDDDEQKVMI 434
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNT 452
P V ISF+AH D + F++E+ P +ILVHGE ++M RLK+KL++ D
Sbjct: 435 PRRCSVDEISFAAHVDGMENRAFIEEVGAPVVILVHGEKNQMMRLKSKLLSLNTDKTVKV 494
Query: 453 KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDD 508
K+ TP NC+ V + F +K+AK +GRLAE P + ++G+LV+ GF +MAP+D
Sbjct: 495 KVYTPANCEEVRIPFQVDKVAKVVGRLAETVPPSDHKESRLLNGVLVQHGFKLSLMAPED 554
Query: 509 LHIFSQLSTANIT--QRIT 525
L ++ L+T +T Q IT
Sbjct: 555 LREYAGLATTTVTCKQHIT 573
>gi|2394306|gb|AAB70268.1| 73 kDA subunit of cleavage and polyadenylation specificity factor
[Homo sapiens]
Length = 379
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 234/378 (61%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD
Sbjct: 1 DMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGD 60
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP
Sbjct: 61 FSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIP 120
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
FALGRAQELLLILDEYW NHPE + PIYYAS LAKKCMAVYQTY+ +MN++IR Q
Sbjct: 121 VFALGRAQELLLILDEYWQNHPELXDXPIYYASSLAKKCMAVYQTYVNAMNDKIRKQINI 180
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY V
Sbjct: 181 NNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCV 240
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
EGTLAK I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHG
Sbjct: 241 EGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHG 300
Query: 432 ESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
E +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+
Sbjct: 301 EQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQ 360
Query: 489 TVSGILVKKGFTYQIMAP 506
VSGILVK+ F Y I++P
Sbjct: 361 RVSGILVKRNFNYHILSP 378
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 244/482 (50%), Positives = 335/482 (69%), Gaps = 18/482 (3%)
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD 121
MA+LP++DE D +DVLLI+HFHLDHAASLPY ++KT FKGRVFMTH TKAIY+ LL D
Sbjct: 1 MASLPFYDEFDLGTVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLND 60
Query: 122 YVKVSKVSVE-DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
+V+V+ + + + L+ ++D+ S D+IE +DFH T+E++GI+F Y AGHVLGAAMF ++
Sbjct: 61 FVRVTAIDDDSNQLYSDKDLKDSFDRIETIDFHSTIEIDGIRFTAYQAGHVLGAAMFFIE 120
Query: 181 IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
IAG++VL+TGD+SREEDRHL AE+P PD+ I EST+G H+PR +EK+ T +IHS
Sbjct: 121 IAGIKVLFTGDFSREEDRHLSVAEVPPVRPDVLITESTFGTATHEPREEKEKKLTTMIHS 180
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T++ GGRVL+P FALGRAQELLLILDEYWS H + NI +YYAS LA+KC+AVYQTYI
Sbjct: 181 TLANGGRVLMPVFALGRAQELLLILDEYWSQHQDLENIKVYYASDLARKCLAVYQTYINM 240
Query: 301 MNERIRNQF--ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCS 358
MNE IR +F N NPF+F++I + ++ F D PSVV+ASPG LQ+G+SR L + W
Sbjct: 241 MNENIRKKFRDTNKNPFQFQYIKNIKNLSKFDDFQPSVVVASPGMLQNGVSRALLEKWAP 300
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTST 416
D +N ++ GY VEGT+AK I+ EP E+ + P M V ISF+AH DY Q S
Sbjct: 301 DPRNTLIMTGYSVEGTMAKEILLEPTEIPSQQNPDVLIPRRMTVEEISFAAHVDYEQNSK 360
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELADC-NT----KIITPKNCQSVEMYFNSEK 471
F++ + P I+LVHGES+ MGRLK+ L+++ + NT K+ P+NC+ + + F K
Sbjct: 361 FIELVNPKTIVLVHGESNPMGRLKSALLSKYSKYKNTPDEVKVYNPRNCEDLLVEFKGIK 420
Query: 472 MAKTIGRLAEKTPEV--------GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+AK +G + E +V ++G+LV+K F ++ DL ++ L+T I QR
Sbjct: 421 IAKAMGTITEDVNKVLKQDVKSAKSEINGVLVQKNFDLSLLKIQDLREYTGLTTTMIKQR 480
Query: 524 IT 525
T
Sbjct: 481 QT 482
>gi|224140917|ref|XP_002323823.1| predicted protein [Populus trichocarpa]
gi|222866825|gb|EEF03956.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 235/250 (94%), Positives = 247/250 (98%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
DMLFDE+DINRSMDKIEV+DFHQT++VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD
Sbjct: 1 DMLFDEKDINRSMDKIEVIDFHQTLDVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 60
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSREEDRHLRAAE+PQFSPDICIIESTYGVQLHQPR++REKRFTDVIHSTIS GGRVLIP
Sbjct: 61 YSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHLREKRFTDVIHSTISLGGRVLIP 120
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
AFALGRAQELLLILDEYW+NHPE HNIPIYYASPLAKKCM VYQTYILSMNERIRNQFAN
Sbjct: 121 AFALGRAQELLLILDEYWANHPELHNIPIYYASPLAKKCMTVYQTYILSMNERIRNQFAN 180
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
SNPFKFKHISPLNSI+DFSDVGPSVVMASPGGLQSGLSRQLFD+WCSDKKNACV+PGYVV
Sbjct: 181 SNPFKFKHISPLNSIEDFSDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNACVLPGYVV 240
Query: 372 EGTLAKTIIS 381
EGTLAKTII+
Sbjct: 241 EGTLAKTIIN 250
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/558 (46%), Positives = 353/558 (63%), Gaps = 47/558 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T VN I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A++ P+ FK + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------------------P 395
W +++N V+ GY VEGT+AK +++EP+++ + +A P
Sbjct: 375 RWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRSAGGVSRRGLAGTDEEQKIMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ AD K
Sbjct: 435 RRCTVDEISFAAHVDGVENRNFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADKAVKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC V + F +K+AK +G+LA+ P + G +SG+LV+ GF +MAPDDL
Sbjct: 495 VYTPANCDEVRIPFRKDKIAKVVGKLAQVAPPSDQDDGRLMSGVLVQNGFDLSLMAPDDL 554
Query: 510 HIFSQLSTANIT--QRIT 525
++ L+T IT Q IT
Sbjct: 555 REYAGLTTTTITCKQHIT 572
>gi|323336337|gb|EGA77605.1| Ysh1p [Saccharomyces cerevisiae Vin13]
Length = 745
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 241/468 (51%), Positives = 334/468 (71%), Gaps = 25/468 (5%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F+GRVFMTH
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGI 161
TKAIY+ LL D+V+V+ + + ++ LF ++D+ S DKIE +D+H TV+VNGI
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGI 120
Query: 162 KFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGV 221
KF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P S ++ I+EST+G
Sbjct: 121 KFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGT 180
Query: 222 QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPE---FHNI 278
H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE++LILDEYWS H + +
Sbjct: 181 ATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQV 240
Query: 279 PIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDFSDVGPSV 336
PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK+IS L +++DF D GPSV
Sbjct: 241 PIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSV 300
Query: 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTA 394
++ASPG LQSGLSR L + WC + KN +I GY +EGT+AK I+ EP + +N +T
Sbjct: 301 MLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITI 360
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----D 449
P QV ISF+AH D+ + F++++ PNIILVHGE++ MGRLK+ L++ A D
Sbjct: 361 PRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKXTD 420
Query: 450 CNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKTPEVGETVSG 492
+ P+NC V++ F K+AK +G + E+ E+ E ++
Sbjct: 421 NEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEENVEIKEEIAA 468
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 262/558 (46%), Positives = 353/558 (63%), Gaps = 48/558 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D
Sbjct: 16 DEPVD-PADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---V 130
S +DVLLI+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPT 134
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
++ E D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++ +TG
Sbjct: 135 SQPVYTEADHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTG 194
Query: 191 DYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GGRVL
Sbjct: 195 DYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVL 254
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLILDEYW H EF PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 255 MPVFALGRAQELLLILDEYWGKHAEFQKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLF 314
Query: 310 --------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L +
Sbjct: 315 RERMAEAEASGDGSGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELLER 374
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQ 399
W + KN +I GY VEGT+AK I+ EP ++ +M+ TA P
Sbjct: 375 WAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTTAGARRGPGGESEKLFIPRRCS 434
Query: 400 VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITP 457
V SF+AH D + F++E+ P +ILVHGE H M RLK+KL++ A K+ +P
Sbjct: 435 VAEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNAGKTQKVKVFSP 494
Query: 458 KNCQSVEMYFNSEKMAKTIGRLAEKTPEVG---------ETVSGILVKKGFTYQIMAPDD 508
KNC+ + + F +KMAK +G+LA P + V+G+LV+ F +MAP+D
Sbjct: 495 KNCEELRIPFKQDKMAKVVGKLATIPPPTSLSSPTQQQQQLVTGVLVQNDFKLSLMAPED 554
Query: 509 LHIFSQLSTANIT--QRI 524
L ++ L+T IT QR+
Sbjct: 555 LREYAGLNTTTITCKQRL 572
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/537 (47%), Positives = 350/537 (65%), Gaps = 37/537 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 142 HDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S I++GGRVL+P FALG
Sbjct: 202 RHLISAEVPKSVKIDVMITESTFGISSNPPRLEREAALMKSVTSVINRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE +PIYY +A++CM VYQTYI +MNE I+ F
Sbjct: 262 RAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEA 321
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ F+ + L ++D F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 322 EARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGMLQTGTSRELLERWAPNERN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA--PLNMQ---------VHYISFSAHAD 410
++ GY VEGT+ K II+EP+++ +M+ A P + Q V ISF+AH D
Sbjct: 382 GVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDDQKIMIQRRCTVDEISFAAHVD 441
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFN 468
+ F++ + P +ILVHGE H+M RLK+KL++ D K+ TP NC V + F
Sbjct: 442 GVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVDKEVKVKVYTPANCDEVRIPFM 501
Query: 469 SEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+K+A+ +GRLAE +P VG+ S G+LV+ GF +MA DDL ++ L+T +T
Sbjct: 502 VDKVARVVGRLAETSPPVGQDDSRLMDGVLVQNGFKLSMMASDDLREYAGLTTTTVT 558
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/551 (46%), Positives = 352/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D S +DVLL+
Sbjct: 23 DELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLSTVDVLLV 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A+LPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 QDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S +++GGRVL+P FALG
Sbjct: 203 RHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPE IPIYY +A++CM VYQTYI +MN+ I+ F
Sbjct: 263 RAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRLFRQRMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ FK + + +++ F DVG V++ASPG LQ+G SR+L + W ++N
Sbjct: 323 EARGDKSTTAGPWDFKFVRSVRNLERFDDVGGCVMLASPGMLQTGTSRELLERWAPSERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA-------------------PLNMQVHY 402
++ GY VEGT+ K I++EP+++ +M+ TA P V
Sbjct: 383 GVIMTGYSVEGTMGKQILNEPEQIPAVMSARTAAGPGRGRIPDGDEEQKVMIPRRCTVEE 442
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNC 460
ISF+AH D + F++ + P +ILVHGE H+M RLK+KL++ A+ KI +P NC
Sbjct: 443 ISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKIYSPTNC 502
Query: 461 QSVEMYFNSEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLS 516
+ + + F +K+AK +GRLAE +P + S G+LV+ GF +MAP+DL ++ L+
Sbjct: 503 EEIRIPFTVDKVAKVVGRLAETSPPAADQESRLMNGVLVQNGFQLSMMAPEDLREYAGLT 562
Query: 517 TANIT--QRIT 525
T IT Q IT
Sbjct: 563 TTTITCKQHIT 573
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/551 (46%), Positives = 352/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D S +DVLL+
Sbjct: 23 DELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLSTVDVLLV 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A+LPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 QDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S +++GGRVL+P FALG
Sbjct: 203 RHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPE IPIYY +A++CM VYQTYI +MN+ I+ F
Sbjct: 263 RAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRLFRQRMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ FK + + +++ F DVG V++ASPG LQ+G SR+L + W ++N
Sbjct: 323 EARGDKSTTAGPWDFKFVRSVRNLERFDDVGGCVMLASPGMLQTGTSRELLERWAPSERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA-------------------PLNMQVHY 402
++ GY VEGT+ K I++EP+++ +M+ TA P V
Sbjct: 383 GVIMTGYSVEGTMGKQILNEPEQIPAVMSARTAAGPGRGRIPDGDEEQKVMIPRRCTVEE 442
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNC 460
ISF+AH D + F++ + P +ILVHGE H+M RLK+KL++ A+ KI +P NC
Sbjct: 443 ISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKIYSPTNC 502
Query: 461 QSVEMYFNSEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLS 516
+ + + F +K+AK +GRLAE +P + S G+LV+ GF +MAP+DL ++ L+
Sbjct: 503 EEIRIPFTVDKVAKVVGRLAETSPPAADQESRLMNGVLVQNGFQLSMMAPEDLREYAGLT 562
Query: 517 TANIT--QRIT 525
T IT Q IT
Sbjct: 563 TTTITCKQHIT 573
>gi|323303815|gb|EGA57598.1| Ysh1p [Saccharomyces cerevisiae FostersB]
Length = 727
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 238/453 (52%), Positives = 328/453 (72%), Gaps = 20/453 (4%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F+GRVFMTH
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGI 161
TKAIY+ LL D+V+V+ + + ++ LF ++D+ S DKIE +D+H TV+VNGI
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGI 120
Query: 162 KFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGV 221
KF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P S ++ I+EST+G
Sbjct: 121 KFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGT 180
Query: 222 QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPE---FHNI 278
H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE++LILDEYWS H + +
Sbjct: 181 ATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQV 240
Query: 279 PIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDFSDVGPSV 336
PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK+IS L +++DF D GPSV
Sbjct: 241 PIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSV 300
Query: 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTA 394
++ASPG LQSGLSR L + WC + KN +I GY +EGT+AK I+ EP + +N +T
Sbjct: 301 MLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITI 360
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----D 449
P QV ISF+AH D+ + F++++ PNIILVHGE++ MGRLK+ L++ A D
Sbjct: 361 PRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTD 420
Query: 450 CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+ P+NC V++ F K+AK +G + +
Sbjct: 421 NEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNE 453
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/551 (46%), Positives = 352/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D S +DVLL+
Sbjct: 23 DELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLSTVDVLLV 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+A+LPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 QDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S +++GGRVL+P FALG
Sbjct: 203 RHLVSAEVPKGIKIDVLIAESTFGISSNPPRLERETALMKSVTSVLNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPE IPIYY +A++CM VYQTYI +MN+ I+ F
Sbjct: 263 RAQELLLILDEYWGRHPELQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRLFRQRMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ FK + + +++ F DVG V++ASPG LQ+G SR+L + W ++N
Sbjct: 323 EARGDKSTTAGPWDFKFVRSVRNLERFDDVGGCVMLASPGMLQTGTSRELLERWAPSERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA-------------------PLNMQVHY 402
++ GY VEGT+ K I++EP+++ +M+ TA P V
Sbjct: 383 GVIMTGYSVEGTMGKQILNEPEQIPAVMSARTAAGPGRGRIPDGDEEQKVMIPRRCTVEE 442
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNC 460
ISF+AH D + F++ + P +ILVHGE H+M RLK+KL++ A+ KI +P NC
Sbjct: 443 ISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKIYSPTNC 502
Query: 461 QSVEMYFNSEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLS 516
+ + + F +K+AK +GRLAE +P + S G+LV+ GF +MAP+DL ++ L+
Sbjct: 503 EEIRIPFTVDKVAKVVGRLAETSPPAADQESRLMNGVLVQNGFQLSMMAPEDLREYAGLT 562
Query: 517 TANIT--QRIT 525
T IT Q IT
Sbjct: 563 TTTITCKQHIT 573
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/544 (46%), Positives = 350/544 (64%), Gaps = 45/544 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS + L+ E
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 QDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL AE+P+ D+ I EST+G+ + PR RE I +++GGRVL+P FALG
Sbjct: 203 RHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPE IPIYY A++CM VYQTYI +MN+ I+ F
Sbjct: 263 RAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQRMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
++ P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 323 EASGDKSVSAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV----------TLMNGLTA----------PLNMQVHY 402
V+ GY VEGT+AK I++EP+++ + G+ A P V
Sbjct: 383 GVVMTGYSVEGTMAKQILNEPEQIPAVMSRATTGLVRRGMAAGNEEEQKVMIPRRCTVDE 442
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNC 460
+SF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K+ TP NC
Sbjct: 443 VSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKVYTPGNC 502
Query: 461 QSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
+ V + F +K+AK +GRLA+ TP + G+ +SG+LV+ GF +MAPDDL ++ L+
Sbjct: 503 EEVRIPFKKDKIAKVVGRLAQITPPSEQDDGQLMSGVLVQNGFNLSLMAPDDLREYAGLT 562
Query: 517 TANI 520
T I
Sbjct: 563 TTAI 566
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 262/561 (46%), Positives = 353/561 (62%), Gaps = 51/561 (9%)
Query: 15 APVSRE----GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE 70
A VS E D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+A LP+FD+
Sbjct: 12 ATVSEEPVDPADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAGLPFFDD 71
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS- 129
D S +DVLLI+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S
Sbjct: 72 FDLSTVDVLLISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSS 131
Query: 130 --VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
++ E D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++
Sbjct: 132 NPTSQPVYTEADHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIF 191
Query: 188 YTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
+TGDYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GG
Sbjct: 192 FTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGG 251
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
RVL+P FALGRAQELLLILDEYW H EF PIYYAS LA+KCM VYQTY+ +MN+ I+
Sbjct: 252 RVLMPVFALGRAQELLLILDEYWGKHSEFQKFPIYYASNLARKCMVVYQTYVGAMNDNIK 311
Query: 307 NQF--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQL 352
F P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L
Sbjct: 312 RLFRERMAEAEASGDGSGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSREL 371
Query: 353 FDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PL 396
+ W + KN +I GY VEGT+AK I+ EP ++ +M+ TA P
Sbjct: 372 LERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRTTAGARRGPGGESEKVLIPR 431
Query: 397 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKI 454
V SF+AH D + F++E+ P +ILVHGE H M RLK+KL++ A K+
Sbjct: 432 RCSVAEYSFAAHVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNAGKTQKVKV 491
Query: 455 ITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVG---------ETVSGILVKKGFTYQIMA 505
+PKNC+ + + F +KMAK +G+LA P + V+G+LV+ F +MA
Sbjct: 492 FSPKNCEELRIPFKQDKMAKVVGKLATIPPPTSLSSPTQHQQQLVTGVLVQNDFKLSLMA 551
Query: 506 PDDLHIFSQLSTANIT--QRI 524
P+DL ++ L+T IT QR+
Sbjct: 552 PEDLREYAGLNTTTITCKQRL 572
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/537 (47%), Positives = 350/537 (65%), Gaps = 37/537 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 142 HDHLSTLPIIETIDFNTTHAINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S I++GGRVL+P FALG
Sbjct: 202 RHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE +PIYY +A++CM VYQTYI +MNE I+ F
Sbjct: 262 RAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEA 321
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ F+ + L ++D F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 322 EARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGMLQTGTSRELLERWAPNERN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA--PLNMQ---------VHYISFSAHAD 410
++ GY VEGT+ K II+EP+++ +M+ A P + Q V ISF+AH D
Sbjct: 382 GVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDDQKIMIQRRCTVDEISFAAHVD 441
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFN 468
+ F++ + P +ILVHGE H+M RLK+KL++ D K+ TP NC V + F
Sbjct: 442 GVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVDKEVKVKVYTPANCDEVRIPFM 501
Query: 469 SEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+K+A+ +GRLAE +P +G+ S G+LV+ GF +MA DDL ++ L+T +T
Sbjct: 502 VDKVARVVGRLAETSPPIGQDDSRLMDGVLVQNGFKLSMMASDDLREYAGLTTTMVT 558
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/558 (46%), Positives = 353/558 (63%), Gaps = 47/558 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ + AGHVLGAAMF+V IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLVSIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A++ P+ FK + L S++ F D+G V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDLGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------------------P 395
W +++N V+ GY VEGT+AK +++EP+++ + +A P
Sbjct: 375 RWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRSAGGVSRRGLAGTDEEQKIMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ AD K
Sbjct: 435 RRCTVDEISFAAHVDGVENRNFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADKTVKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC V + F +K+AK +G+LA+ P + G +SG+LV+ GF +MAPDDL
Sbjct: 495 VYTPANCDEVRIPFRKDKVAKVVGKLAQVAPPSDQDDGRLMSGVLVQNGFDLSLMAPDDL 554
Query: 510 HIFSQLSTANIT--QRIT 525
++ L+T IT Q IT
Sbjct: 555 REYAGLTTTTITCKQHIT 572
>gi|238882385|gb|EEQ46023.1| hypothetical protein CAWG_04366 [Candida albicans WO-1]
Length = 783
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/568 (45%), Positives = 359/568 (63%), Gaps = 72/568 (12%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 77
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDM-------LFDEQ 138
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 78 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 137
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDYSREE+R
Sbjct: 138 DIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENR 197
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +PR E++ T IH+TI++GGRVL+P FALG A
Sbjct: 198 HLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLTTHIHATIAKGGRVLLPVFALGNA 257
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN---SNPF 315
QELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR A+ SNPF
Sbjct: 258 QELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSASSEKSNPF 317
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 318 DFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTM 377
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + +T P + + ISF+AH D+ Q S F++++ P +ILVHG+S
Sbjct: 378 AKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKVILVHGDS 437
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV-- 486
MGRLK+ L+++ A D K+ PKNC+ + + F K+AK +G LAE+ +V
Sbjct: 438 VPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIGFKGLKIAKVLGSLAEEQLQVLK 497
Query: 487 --------------------------------------------------GETVSGILVK 496
G+ VSG+LV
Sbjct: 498 KVIQDEVSAENSKITELTEEKEEADEIKEDNGETDTTQKPNESSINVLKTGQVVSGVLVS 557
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQRI 524
K F ++ DLH F+QLST+ + ++
Sbjct: 558 KDFNLNLLQLQDLHEFTQLSTSIVKSKM 585
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/551 (46%), Positives = 353/551 (64%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS + L+ E
Sbjct: 83 SHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 143 QDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL AE+P+ D+ I EST+G+ + PR RE I +++GGRVL+P FALG
Sbjct: 203 RHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW HPE IPIYY A++CM VYQTYI +MN+ I+ F
Sbjct: 263 RAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRLFRQRMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
++ P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 323 EASGDKSVSAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV----------TLMNGLTA----------PLNMQVHY 402
V+ GY VEGT+AK I++EP+++ + G+ A P V
Sbjct: 383 GVVMTGYSVEGTMAKQILNEPEQIPAVMSRATTGLVRRGMAAGNEEEQKVMIPRRCTVDE 442
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNC 460
+SF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K+ TP NC
Sbjct: 443 VSFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKVYTPGNC 502
Query: 461 QSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
+ V + F +K+AK +G+LA+ P + G+ +SG+LV+ GF +MAPDDL ++ L+
Sbjct: 503 EEVRIPFKKDKIAKVVGKLAQIAPPSEQDDGQLMSGVLVQNGFNLSLMAPDDLREYAGLT 562
Query: 517 TANIT--QRIT 525
T IT Q IT
Sbjct: 563 TTAITCKQHIT 573
>gi|68489322|ref|XP_711502.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
gi|68489371|ref|XP_711478.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|74584420|sp|Q59P50.1|YSH1_CANAL RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46432783|gb|EAK92250.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|46432809|gb|EAK92275.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
Length = 870
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/568 (45%), Positives = 359/568 (63%), Gaps = 72/568 (12%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 164
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDM-------LFDEQ 138
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 165 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 224
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDYSREE+R
Sbjct: 225 DIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENR 284
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +PR E++ T IH+TI++GGRVL+P FALG A
Sbjct: 285 HLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLTTHIHATIAKGGRVLLPVFALGNA 344
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN---SNPF 315
QELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR A+ SNPF
Sbjct: 345 QELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSASSEKSNPF 404
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 405 DFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTM 464
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + +T P + + ISF+AH D+ Q S F++++ P +ILVHG+S
Sbjct: 465 AKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKVILVHGDS 524
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV-- 486
MGRLK+ L+++ A D K+ PKNC+ + + F K+AK +G LAE+ +V
Sbjct: 525 VPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIGFKGLKIAKVLGSLAEEQLQVLK 584
Query: 487 --------------------------------------------------GETVSGILVK 496
G+ VSG+LV
Sbjct: 585 KIIQDEVSAENSKITELTEEKEEADEIKEDNGETDTTQKPNESSINVLKTGQVVSGVLVS 644
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQRI 524
K F ++ DLH F+QLST+ + ++
Sbjct: 645 KDFNLNLLQLQDLHEFTQLSTSIVKSKM 672
>gi|241951638|ref|XP_002418541.1| cleavage and polyadenylation factor specificity complex subunit,
putative; endonuclease, putative [Candida dubliniensis
CD36]
gi|223641880|emb|CAX43843.1| cleavage and polyadenylation factor specificity complex subunit,
putative [Candida dubliniensis CD36]
Length = 787
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 240/483 (49%), Positives = 334/483 (69%), Gaps = 21/483 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 77
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-----------LFDE 137
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + L+ +
Sbjct: 78 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSGDGSGGGEGSNLYTD 137
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ V+I G++VL+TGDYSREE+
Sbjct: 138 DDIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFVEIGGLKVLFTGDYSREEN 197
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI I EST+G +PR E++ T IH+TI++GGRVL+P FALG
Sbjct: 198 RHLHAAEVPPLKPDILICESTFGTGTLEPRLELERKLTTHIHATIAKGGRVLLPVFALGN 257
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN---SNP 314
AQELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR A+ SNP
Sbjct: 258 AQELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSASSKKSNP 317
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F FK I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT
Sbjct: 318 FDFKFIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGT 377
Query: 375 LAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
+AK ++ EP + LT P + + ISF+AH D+ Q S F++++ P +ILVHG+
Sbjct: 378 MAKELLKEPTMIQSATNPDLTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKVILVHGD 437
Query: 433 SHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVG 487
S MGRLK+ L+++ A D K+ PKNC+ +++ F K+AK +G LAE+ ++
Sbjct: 438 SVPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELKIGFKGLKIAKVLGSLAEEQLQIL 497
Query: 488 ETV 490
+ V
Sbjct: 498 KKV 500
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/537 (47%), Positives = 350/537 (65%), Gaps = 37/537 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 142 HDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S I++GGRVL+P FALG
Sbjct: 202 RHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE +PIYY +A++CM VYQTYI +MNE I+ F
Sbjct: 262 RAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEA 321
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ F+ + L ++D F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 322 EARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGMLQTGTSRELLERWAPNERN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA--PLNMQ---------VHYISFSAHAD 410
++ GY VEGT+ K II+EP+++ +M+ A P + Q V +SF+AH D
Sbjct: 382 GVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDDQKIMIQRRCTVDEVSFAAHVD 441
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFN 468
+ F++ + P +ILVHGE H+M RLK+KL++ D K+ TP NC V + F
Sbjct: 442 GVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVDKEVKVKVYTPANCDEVRIPFM 501
Query: 469 SEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+K+A+ +GRLAE +P +G+ S G+LV+ GF +MA DDL ++ L+T +T
Sbjct: 502 VDKVARVVGRLAETSPPIGQDDSRLMDGVLVQNGFKLSMMASDDLREYAGLTTTMVT 558
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 236/451 (52%), Positives = 325/451 (72%), Gaps = 18/451 (3%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ D GIHPAY GMA+LP++D+ D S +DVLLI+HFHLDHAASLPY ++KT F GRVFMTH
Sbjct: 1 MLDAGIHPAYQGMASLPFYDDFDLSTVDVLLISHFHLDHAASLPYVMQKTNFNGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKVSV------EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKF 163
TKAIY+ LL D+V+V+ + V E+ L+ +D+ S DKIE +D+H T++VNGIKF
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGVNSPLDREENLYTNEDLVESFDKIETVDYHSTIDVNGIKF 120
Query: 164 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQL 223
+ AGHVLGAAMF ++IAG+RVL+TGDYSRE+DRHL +AE+P S +I I+EST+G
Sbjct: 121 TAFHAGHVLGAAMFQIEIAGMRVLFTGDYSREKDRHLNSAEVPPLSSNILIVESTFGTAT 180
Query: 224 HQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEF---HNIPI 280
H+PR REK+ T +IH T+S GGRVL+P FALGRAQEL+LILDEYW+ H E +PI
Sbjct: 181 HEPRLNREKKLTQMIHHTVSHGGRVLMPVFALGRAQELMLILDEYWAQHAEELGDGQVPI 240
Query: 281 YYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDFSDVGPSVVM 338
YYAS LA+KCM+V+QTY+ MN+ IR +F +S NPF FK+IS L ++++F D+GPSV++
Sbjct: 241 YYASNLARKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLKNLEEFQDLGPSVML 300
Query: 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTAPL 396
ASPG LQSGLSR L + WC D+KN +I GY +EGT+AK ++ EP + +N +T
Sbjct: 301 ASPGMLQSGLSRDLLERWCPDEKNLVLITGYSIEGTMAKYLMLEPDTIPSVNNPEVTVAR 360
Query: 397 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL-----ADCN 451
+ ISF+AH D+ + F++++ NIILVHGES+ MGRLK+ +++ +
Sbjct: 361 RCNIEEISFAAHVDFQENLEFIQKINATNIILVHGESNPMGRLKSAILSNFNALKGTENE 420
Query: 452 TKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+ P+NC V++ F K+AK +G + ++
Sbjct: 421 VHVFNPRNCVDVDLEFKGVKIAKAVGNIVDE 451
>gi|323307973|gb|EGA61229.1| Ysh1p [Saccharomyces cerevisiae FostersO]
Length = 727
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 237/453 (52%), Positives = 327/453 (72%), Gaps = 20/453 (4%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTH 109
+ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F+GRVFMTH
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTH 60
Query: 110 ATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGI 161
TKAIY+ LL D+V+V+ + + ++ LF ++D+ S DKIE +D+H TV+VNGI
Sbjct: 61 PTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGI 120
Query: 162 KFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGV 221
KF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P S ++ I+EST+G
Sbjct: 121 KFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGT 180
Query: 222 QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPE---FHNI 278
H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE++LILDEYWS H + +
Sbjct: 181 ATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQV 240
Query: 279 PIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDFSDVGPSV 336
PI+YAS LAKKCM+V+QTY+ MN+ I +F +S NPF FK+IS L +++DF D GPSV
Sbjct: 241 PIFYASNLAKKCMSVFQTYVNMMNDDIXKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSV 300
Query: 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTA 394
++ASPG LQSGLSR L + WC + KN +I GY +EGT+AK I+ EP + +N +T
Sbjct: 301 MLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEPDTIPSINNPEITI 360
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----D 449
P QV ISF+AH D+ + F++++ PNIILVHGE++ MGRLK+ L++ A D
Sbjct: 361 PRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLKSALLSNFASLKGTD 420
Query: 450 CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+ P+NC V++ F K+AK +G + +
Sbjct: 421 NEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNE 453
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/557 (46%), Positives = 353/557 (63%), Gaps = 46/557 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +DVLLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T VN I + AGHVLGAAMF+V IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTVNSIHITPFPAGHVLGAAMFLVSIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPKGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A++ P+ F+ + L S++ F DVG V++ASPG LQSG SR+L +
Sbjct: 315 FRQRMAEAEASGDKNASAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQSGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA------------------PL 396
W +++N ++ GY VEGT+AK +++EP+++ + A P
Sbjct: 375 RWAPNERNGVIMTGYSVEGTMAKQLLNEPEQIPAVMSRAATGLIRRGANSDEEQKVMIPR 434
Query: 397 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKI 454
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K+
Sbjct: 435 RCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKV 494
Query: 455 ITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDLH 510
TP NC V + F +K+AK +G+LA+ P + G+ ++G+LV+ GF +MAPDDL
Sbjct: 495 YTPANCDEVRIPFKKDKIAKVVGKLAQIAPPSEQDDGQLMTGVLVQNGFNLSLMAPDDLR 554
Query: 511 IFSQLSTANIT--QRIT 525
++ L+T +IT Q IT
Sbjct: 555 EYAGLTTTSITCKQHIT 571
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/566 (45%), Positives = 358/566 (63%), Gaps = 54/566 (9%)
Query: 13 RDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTIL-----------FDCGIHPAYSG 61
+D PV D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G
Sbjct: 15 QDEPVD-PSDELMFLCLGGGNEVGRSCHIIQYKGKTVMVRKSRDALEAALDAGQHPAYDG 73
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD 121
+AALP++D+ D S +DVLLI+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D
Sbjct: 74 LAALPFYDDFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQD 133
Query: 122 YVKVSKVSVED--MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMV 179
V+V+ + L+ EQD + +IE +D+H T ++ I+ Y AGHVLGAAMF++
Sbjct: 134 SVRVANTASNSATQLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLI 193
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
+IAG+ + +TGDYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I
Sbjct: 194 EIAGLNIFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRVEREQALMKSI 253
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
+++GGR L+P FALGRAQELLLILDEYW H EF PIYYAS LA+KCM +YQTY+
Sbjct: 254 TGILNRGGRALLPVFALGRAQELLLILDEYWGKHTEFQKFPIYYASNLARKCMVIYQTYV 313
Query: 299 LSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGL 344
+MN+ I+ F + P+ FK+I L ++D F DVG V++ASPG L
Sbjct: 314 GAMNDNIKRLFRERMAEAEASGDGAGKNGPWDFKYIRSLKNLDRFDDVGGCVMLASPGML 373
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM--------------- 389
Q+G+SR+LF+ W +KN +I GY VEGT+A+ I+ EP ++ +
Sbjct: 374 QNGVSRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIQAVMSRSIAGARRGPGAD 433
Query: 390 -NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA 448
+ P V SF+AH D + F++E+ P +ILVHGE H M RLK+KL++ A
Sbjct: 434 SEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNA 493
Query: 449 DCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP--EVGET---VSGILVKKGFTY 501
T K+ +P+NC+ + + F ++K AK +G+LA +P ++G + V+G+LV+ F
Sbjct: 494 SKTTKVKVYSPRNCEELRIPFKADKTAKVVGKLASISPPQDIGASAPLVTGVLVQNDFKL 553
Query: 502 QIMAPDDLHIFSQLSTANIT--QRIT 525
+MAP+DL ++ L+T IT QR+T
Sbjct: 554 SLMAPEDLREYAGLNTTTITCKQRLT 579
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/546 (46%), Positives = 350/546 (64%), Gaps = 36/546 (6%)
Query: 15 APVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
A V+ D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S
Sbjct: 12 ATVADPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLS 71
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VE 131
+DVLLI+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S
Sbjct: 72 TVDVLLISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTS 131
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++ E D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGD
Sbjct: 132 QPVYTEADHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGD 191
Query: 192 YSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
YSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+
Sbjct: 192 YSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRVLM 251
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P FALGRAQELLLILDEYW H E+ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 252 PVFALGRAQELLLILDEYWGKHGEYQKFPIYYASNLARKCMVVYQTYVGAMNDNIKRLFR 311
Query: 310 -------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIW 356
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L + W
Sbjct: 312 ERMAEAEASGDGSGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELLERW 371
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM------NGLTAPLNMQVHYISFSAHAD 410
++KN +I GY VEGT+AK I+ EP ++ + + V SF+AH D
Sbjct: 372 APNEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMPPPARDADPEERARSVAEYSFAAHVD 431
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT--KIITPKNCQSVEMYFN 468
+ F++E+ P +ILVHGE H M RLK+KL++ A T K+ +PKNC+ + + F
Sbjct: 432 GTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNAGKTTKVKVFSPKNCEELRIPFK 491
Query: 469 SEKMAKTIGRLAEKTP--------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANI 520
+K AK +G+LA P E + V+G+LV+ F +MAP+DL ++ L+T I
Sbjct: 492 QDKTAKVVGKLATIPPPTSLTPAQEQQQLVTGVLVQNDFKLSLMAPEDLREYAGLNTTTI 551
Query: 521 T--QRI 524
T QR+
Sbjct: 552 TCKQRL 557
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/585 (43%), Positives = 370/585 (63%), Gaps = 70/585 (11%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
+ +DA S E + LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFD
Sbjct: 1 MGEKDASFSNE-ESFKFFGLGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFD 59
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV- 128
E D S +D+LL++HFH+DH+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ +
Sbjct: 60 EYDLSKVDILLVSHFHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIG 119
Query: 129 ----------SVEDM---LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAA 175
S D ++ + DI +S D+IE +DFH T+EV+GI+F Y AGHVLGA
Sbjct: 120 NSRTEGGGSTSSNDEGGNIYTDDDIFKSFDRIETIDFHSTMEVDGIRFTAYYAGHVLGAC 179
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFT 235
M++++I G+++L+TGDYSREE+RHL +AE+P PD+ I EST+G +PR E + T
Sbjct: 180 MYLIEIGGLKILFTGDYSREENRHLPSAEVPPVKPDVLITESTFGTGTLEPRAELETKLT 239
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
+ IH+T+++GGRVL+P FALG AQELLLILDEYW + + N+ +YY S LA+KCMAVY+
Sbjct: 240 NHIHATLTKGGRVLLPVFALGNAQELLLILDEYWEKNEDLQNVSVYYCSDLARKCMAVYE 299
Query: 296 TYILSMNERIR----NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQ 351
TY MN++IR + + S+PF FK+I + ++ FSD+GPSVV+A+PG LQ+G+SRQ
Sbjct: 300 TYTGIMNDKIRLSSSSDDSKSSPFDFKYIKSIRNLSKFSDLGPSVVVATPGMLQAGVSRQ 359
Query: 352 LFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHA 409
L + W ++KN ++ GY VEGT+AK ++ EP+ + +N L+ P + + ISF+AH
Sbjct: 360 LLEKWAPEQKNLVILTGYSVEGTMAKDLLKEPQVIQSLNNPDLSIPRRIGIEEISFAAHV 419
Query: 410 DYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVE 464
D+ Q S F+ ++ P IILVHG+S MGRLK+ L+++ + D K+ P+NC+ +
Sbjct: 420 DFQQNSEFIDKVSPSKIILVHGDSVPMGRLKSALLSKYSSRKGTDKEVKVFNPRNCEELT 479
Query: 465 MYFNSEKMAKTIGRLAE------------------------KTPEV-------------- 486
+ F K+AK +G LAE K EV
Sbjct: 480 IPFKGLKIAKVLGSLAEEQLQTLKHEIEEKLTEVDNDGNDVKMEEVDDEDSEKKRQVNGT 539
Query: 487 ------GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
G+ VSG+LV K F ++ DL+ F+QLST+ + ++
Sbjct: 540 LSTFKPGQVVSGVLVAKDFELDLVQLQDLNEFTQLSTSIVKSKMN 584
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/537 (47%), Positives = 349/537 (64%), Gaps = 37/537 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L+ E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 142 HDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S I++GGRVL+P FALG
Sbjct: 202 RHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALIKSVTSIINRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE +PIYY +A++CM VYQTYI +MNE I+ F
Sbjct: 262 RAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEA 321
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ F+ + L ++D F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 322 EARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGMLQTGTSRELLERWAPNERN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA--PLNMQ---------VHYISFSAHAD 410
++ GY VEGT+ K II+EP+++ +M+ A P + Q V ISF+AH D
Sbjct: 382 GVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDDQKIMIQRRCTVDEISFAAHVD 441
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFN 468
+ F++ + P +ILVHGE H+M RLK+KL++ D K+ TP NC V + F
Sbjct: 442 GVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVDKEVKVKVYTPANCDEVRIPFM 501
Query: 469 SEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+K+A+ +GRLAE +P +G+ S G+LV+ GF +MA DDL ++ L+T +T
Sbjct: 502 VDKVARVVGRLAETSPPMGQDDSRLMDGVLVQNGFKLSMMASDDLREYAGLTTTMVT 558
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/550 (47%), Positives = 352/550 (64%), Gaps = 47/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ +L+TGDYSRE+DR
Sbjct: 143 DHLNTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSVLNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW+ H E+ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWAKHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK I L SID F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 ASGDGAGKGGPWDFKFIRSLKSIDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP+++ +M +A P V SF+A
Sbjct: 383 VIITGYSVEGTMAKHIMQEPEQIQAVMTRSSAGGRRGPGGDAEKVMIPRRCTVQEFSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ + +
Sbjct: 443 HVDGTENREFIEEVGAPVVILVHGEVHNMMRLKSKLLSLNANKTNKVKVYSPRNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAE-----KTP----EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
F ++K AK +G+LA K P E ++G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKTDKTAKVVGKLASIPQPMKMPKAESEEPRLITGVLVQNDFKMSLMAPEDLREYAGLT 562
Query: 517 TANIT--QRI 524
T I QR+
Sbjct: 563 TTTIACKQRL 572
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 257/559 (45%), Positives = 349/559 (62%), Gaps = 55/559 (9%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDE 137
I+HFH+DHAASLPY L KT F+GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPTSSLVYTE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+D ++ IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSREED
Sbjct: 141 EDHLKTFPMIEAIDYNTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREED 200
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALG
Sbjct: 201 RHLISAEVPKGVKIDVLITESTYGIASHIPRVEREQALMKSITGILNRGGRVLMPVFALG 260
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW H EF PIYYAS LA+KCM VYQTY+ SMN+ I+ F
Sbjct: 261 RAQELLLILDEYWGKHAEFQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAES 320
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
P+ FK I L SID F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 321 ESSGDGAGKGGPWDFKFIRSLKSIDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKN 380
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLM------------------NGLTAPLNMQVHYIS 404
+I GY VEGT+AK I+ EP + + + P V S
Sbjct: 381 GVIITGYSVEGTMAKHIMQEPDTIQAVMSRNIAGARRGPGGGGDAEKVMIPRRCTVQEFS 440
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPKNCQS 462
F+AH D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +PKNC+
Sbjct: 441 FAAHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNANKEHKVKVFSPKNCEE 500
Query: 463 VEMYFNSEKMAKTIGRLAEKTPEVGET---------------VSGILVKKGFTYQIMAPD 507
+ + F ++K+AK +G+LA P + E ++G+LV+ F +MAP+
Sbjct: 501 LRIPFKTDKVAKVVGKLAAIPPALKEAKNSHDGPLPSSEPQLITGVLVQNDFKMSLMAPE 560
Query: 508 DLHIFSQLSTANIT--QRI 524
DL ++ L+T I QR+
Sbjct: 561 DLKEYAGLTTTTIACKQRL 579
>gi|321264788|ref|XP_003197111.1| cleavage and polyadenylation specificity factor [Cryptococcus
gattii WM276]
gi|317463589|gb|ADV25324.1| Cleavage and polyadenylation specificity factor, putative
[Cryptococcus gattii WM276]
Length = 778
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/528 (46%), Positives = 346/528 (65%), Gaps = 19/528 (3%)
Query: 6 QPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
QPP DAP L IT LGAG EVGRSC + ++GK I+ D G+HPA G+ AL
Sbjct: 20 QPPD---EDAP------SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGAL 70
Query: 66 PYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDY 122
P+ DE+D S +D LLITHFH+DHAA+LPY +EKT FK G+V+MTHATKAIY L + D
Sbjct: 71 PFIDELDWSTVDALLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDT 130
Query: 123 VKVSKVS--VEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMV 179
V+++ + L+DE D+ S +D+HQ + + G++F Y AGHVLGA+MF++
Sbjct: 131 VRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLI 190
Query: 180 DIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
+IAG+++LYTGDYSREEDRHL AE+P PD+ I EST+GV R +E++FT ++
Sbjct: 191 EIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFTTLVA 250
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
+ + +GGR L+P + G QEL L+LDEYW++HPE NIP+Y+AS L ++ M VY+TY+
Sbjct: 251 NIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTYVH 310
Query: 300 SMNERIRNQFA-NSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+MN IR++FA NPF F+ + L + GP V+M+SP + GLSR L + W
Sbjct: 311 TMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEEWA 370
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 417
D KN ++ GY +EGT+A+T++SEP + + G P + V ISF AH DYAQ S F
Sbjct: 371 PDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNIPRRLTVKEISFGAHVDYAQNSKF 430
Query: 418 LKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMAKT 475
++E+ +++LVHGE+ +MGRL+ L A +I TPKNC+ + + F E+M K
Sbjct: 431 IQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTLTFRQERMVKA 490
Query: 476 IGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
IG LA PE G +V G+LV K F+Y +++P DLH F+ LST+ I Q+
Sbjct: 491 IGSLASTRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQK 538
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/560 (45%), Positives = 355/560 (63%), Gaps = 49/560 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D
Sbjct: 16 DEPVD-PSDELLFNCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +DVLL++HFHLDH+A+LPY L KT FKGR+FMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDVLLVSHFHLDHSAALPYVLSKTNFKGRIFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLPLIEAIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE+P+ D+ I EST+G+ PR RE + S +++GGRV
Sbjct: 195 GDYSREEDRHLISAEVPKGIKIDVLIAESTFGISSSPPRLERETALMKSVTSILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYWS HP+ +PI+Y +A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWSRHPDLQKVPIFYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F + P+ FK + + +++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRERMAEAEAKGDKSTTAGPWDFKFVRSVRNLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------- 394
W ++N ++ GY VEGT+ K I++EP+++ +M+ T
Sbjct: 375 RWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSARTGIGLGRGRIPDGDDEQKVMI 434
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNT 452
P V ISF+AH D + F++ + P +ILVHGE H+M RLK+KL++ A+
Sbjct: 435 PRRCTVEEISFAAHVDGVENREFIEAVAAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKV 494
Query: 453 KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE-----TVSGILVKKGFTYQIMAPD 507
KI +P NC+ + + F +K+AK +GRLAE +P + ++G+LV+ GF +MAP+
Sbjct: 495 KIYSPSNCEEIRIPFTVDKIAKVVGRLAETSPPTADYDDSRLMNGVLVQNGFQLSMMAPE 554
Query: 508 DLHIFSQLSTANIT--QRIT 525
DL ++ L+T IT Q IT
Sbjct: 555 DLREYAGLTTTTITCKQHIT 574
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/564 (45%), Positives = 351/564 (62%), Gaps = 54/564 (9%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+LI T LG GNEVGRSC + Y+GKT++ D G HPAY G+AALP+FD+ D
Sbjct: 16 DEPVD-PADELIFTCLGGGNEVGRSCHIIQYRGKTVMLDAGQHPAYDGLAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---V 130
S +DVLLI+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHIDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLMQDSVRVGNTSSNPT 134
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
++ EQD + +IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+ V +TG
Sbjct: 135 SQPVYTEQDHLNTFPQIEAIDYYTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNVFFTG 194
Query: 191 DYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGRVL
Sbjct: 195 DYSREQDRHLVSAEVPRGVQIDVLITESTYGIASHVPRMEREQALMKSITGILNRGGRVL 254
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLILDEYW H E+ +PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 255 MPVFALGRAQELLLILDEYWDRHSEYQKVPIYYASNLARKCMVVYQTYVGAMNDNIKRLF 314
Query: 310 --------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
P+ FK I L ++D F D+GP V++ASPG LQ+G+SR+L +
Sbjct: 315 RERLAEAEAAGNVGTGGGPWDFKFIRSLKNLDRFDDLGPCVMLASPGMLQTGVSRELLER 374
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM--------------NGLTAPLNMQVH 401
W KN VI GY VEGT+AK I+ EP ++ + L P V
Sbjct: 375 WAPSDKNGVVITGYSVEGTMAKQIMQEPDQIHAVMTRNAAAASRRADGEKLMIPRRCSVA 434
Query: 402 YISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPKN 459
SF+AH D + F++E+ P +ILVHGE + M RLK+KL++ A+ K+ +P+N
Sbjct: 435 EFSFAAHVDGTENREFIEEVNAPVVILVHGEVNNMMRLKSKLLSLNANKTEKVKVFSPRN 494
Query: 460 CQSVEMYFNSEKMAKTIGRLAEKTP-----------------EVGETVSGILVKKGFTYQ 502
C+ + + F ++KMAK +G+LA P + ++G+LV+ F
Sbjct: 495 CEELRIPFKADKMAKVVGKLAAIPPPTKLPPADGGLDGPLQQQQQRLITGVLVQNDFKLS 554
Query: 503 IMAPDDLHIFSQLSTANIT--QRI 524
+MAP+DL ++ L+T I QRI
Sbjct: 555 LMAPEDLREYAGLTTTTIVCRQRI 578
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 259/556 (46%), Positives = 351/556 (63%), Gaps = 47/556 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ T LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D
Sbjct: 16 DEPVD-PADELVFTCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---V 130
S +DVLLI+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHVDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPT 134
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
++ EQD + +IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+ + +TG
Sbjct: 135 SQPVYTEQDHLNTFPQIEAIDYYTTHTISSIRITPYPAGHVLGAAMFLIEIAGMNIFFTG 194
Query: 191 DYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGRVL
Sbjct: 195 DYSREQDRHLVSAEVPRGVKIDVLITESTYGIASHVPRVEREQALMKSITGILNRGGRVL 254
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLILDEYW H E+ +PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 255 MPVFALGRAQELLLILDEYWGKHQEYQKVPIYYASNLARKCMVVYQTYVGAMNDNIKRLF 314
Query: 310 AN---------------SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
P+ FK+I L ++D F D+GP V++ASPG LQ+G+SR+L +
Sbjct: 315 RERLAEAEASGKSGAGGGGPWDFKYIRSLKNLDRFDDLGPCVMLASPGMLQNGVSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA-------------PLNMQV 400
W KN VI GY VEGT+AK I+ EP+++ +M A P V
Sbjct: 375 RWAPSDKNGVVITGYSVEGTMAKQIMQEPEQIPAIMTRNAAAASRRADGEKPMIPRRCSV 434
Query: 401 HYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPK 458
SF+AH D + F++E+ P +ILVHGE + M RLK+KL++ A KI +P+
Sbjct: 435 AEFSFAAHVDGTENREFIEEVAAPVVILVHGEQNNMMRLKSKLLSLNATKTEKVKIYSPR 494
Query: 459 NCQSVEMYFNSEKMAKTIGRLAEKTPEVG-----------ETVSGILVKKGFTYQIMAPD 507
NC+ + + F ++K AK +G+LA TP + V+G+LV+ F +MAP+
Sbjct: 495 NCEELRIPFKTDKTAKVVGKLASITPPTRLPTDDDYHLHPQLVTGVLVQNDFKLSLMAPE 554
Query: 508 DLHIFSQLSTANITQR 523
DL ++ L+T I R
Sbjct: 555 DLREYAGLTTTTIVCR 570
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/549 (46%), Positives = 352/549 (64%), Gaps = 44/549 (8%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L+ LG GNEVGRSC + YKGKT++ D G H Y G+A+LP++D+ D S +DVLL
Sbjct: 23 ADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHAGYEGLASLPFYDDFDLSTVDVLL 82
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---LFDE 137
I+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D ++V S + ++ E
Sbjct: 83 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSIRVGGASSDSKGQPVYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSRE+D
Sbjct: 143 ADHLSTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDD 202
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I ESTYG+ H PR RE++ I S +++GGRVL+P FALG
Sbjct: 203 RHLVSAEVPKGVKIDVLITESTYGIAAHVPRVEREQQLMKSITSILNRGGRVLMPVFALG 262
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW+ HPEF IPIYYAS LA+KCM VYQTY+ +MNE I+ F
Sbjct: 263 RAQELLLILDEYWALHPEFQKIPIYYASNLARKCMLVYQTYVGAMNENIKRLFRERMAEA 322
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
A P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 EASSDTAAKGGPWDFKYIRSLKNLDRFDDVGRCVMLASPGMLQNGVSRELLERWAPSEKN 382
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA----------------PLNMQVHYISF 405
VI GY VEGT+AK I+ EP ++ +M+ T P V SF
Sbjct: 383 GVVITGYSVEGTMAKQIMQEPDQIQAIMSRNTGGARRGPDLSESEKVMIPRRCSVQEFSF 442
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSV 463
+AH D + F++E+ P +ILVHGE H M RLK+KL++ AD K+ +P+NC+ +
Sbjct: 443 AAHVDGIENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNADKTNKVKVFSPRNCEEL 502
Query: 464 EMYFNSEKMAKTIGRLAE-----KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTA 518
+ F + K A+ +G+LA + ++G++V+ F +MAP+DL ++ L+T
Sbjct: 503 RIPFKAVKTARVVGKLASIPAPAANSNQSQLMTGVIVQNDFKMSLMAPEDLREYAGLTTT 562
Query: 519 NIT--QRIT 525
IT QR+T
Sbjct: 563 IITCKQRMT 571
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/559 (46%), Positives = 354/559 (63%), Gaps = 48/559 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHILEYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +DVLLI+HFH+DH+++LPY L KT FKGRVFMT AT+AIYK L+ D V+VS S
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E+D ++ IE +DF+ T +NGI+ Y AGHVLGAAMF +DIAG+ L+T
Sbjct: 135 QRTTLYTERDHLSTLPLIETIDFYTTHTINGIRITPYPAGHVLGAAMFKIDIAGLVTLFT 194
Query: 190 GDYSREEDRHLRAAELPQFSP-DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL A +P + D+ I EST+G+ + PR RE I S +++GGRV
Sbjct: 195 GDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITSILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE PIYY +A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------ANSN------PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A+ N P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------- 394
W +N V+ GY VEGT+AK +++EP ++ +M+ ++
Sbjct: 375 RWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDEDQKVMI 434
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNT 452
P V +SF+AH D + TF++E+ P +ILVHGE H+M RLK+KL++ AD
Sbjct: 435 PRRCTVDEVSFAAHVDGVENRTFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADKAVKV 494
Query: 453 KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDD 508
K+ TP NC V + F +K+AK +G+LAE P + + ++G+LV+ GF +MAPDD
Sbjct: 495 KVYTPANCDEVRIPFKKDKIAKVVGKLAELAPPSENDDAQLMAGVLVQNGFNLSLMAPDD 554
Query: 509 LHIFSQLSTANIT--QRIT 525
LH ++ L+T IT Q IT
Sbjct: 555 LHEYAGLTTTTITCKQHIT 573
>gi|58270576|ref|XP_572444.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118056|ref|XP_772409.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819805|sp|P0CM89.1|YSH1_CRYNB RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|338819806|sp|P0CM88.1|YSH1_CRYNJ RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|50255022|gb|EAL17762.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228702|gb|AAW45137.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 773
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/530 (46%), Positives = 347/530 (65%), Gaps = 19/530 (3%)
Query: 4 VGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
V QPP DAP L IT LGAG EVGRSC + ++GK I+ D G+HPA G+
Sbjct: 18 VLQPPD---EDAP------SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIG 68
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLT 120
ALP+ DE+D S +D +LITHFH+DHAA+LPY +EKT FK G+V+MTHATKAIY L +
Sbjct: 69 ALPFIDELDWSTVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMM 128
Query: 121 DYVKVSKVS--VEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMF 177
D V+++ + L+DE D+ S +D+HQ + + G++F Y AGHVLGA+MF
Sbjct: 129 DTVRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMF 188
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+++IAG+++LYTGDYSREEDRHL AE+P PD+ I EST+GV R +E++FT +
Sbjct: 189 LIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFTTL 248
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ + + +GGR L+P + G QEL L+LDEYW++HPE NIP+Y+AS L ++ M VY+TY
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTY 308
Query: 298 ILSMNERIRNQFA-NSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDI 355
+ +MN IR++FA NPF F+ + L + GP V+M+SP + GLSR L +
Sbjct: 309 VHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEE 368
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
W D KN ++ GY +EGT+A+T++SEP + + G P + V ISF AH DYAQ S
Sbjct: 369 WAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGAHVDYAQNS 428
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMA 473
F++E+ +++LVHGE+ +MGRL+ L A +I TPKNC+ + + F E+M
Sbjct: 429 KFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTLTFRQERMV 488
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
K IG LA PE G +V G+LV K F+Y +++P DLH F+ LST+ I Q+
Sbjct: 489 KAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQK 538
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/551 (46%), Positives = 349/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQ 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DR
Sbjct: 143 DHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW H +F PIYYAS LA+KCM +YQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 ASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTL-----MNG-----------LTAPLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ M G + P V SF+A
Sbjct: 383 VIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKVLIPRRCSVQEYSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ + +
Sbjct: 443 HVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLSLNANKTAKVKVYSPRNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAEKTP---------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
F ++K AK +G+LA P V+G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKADKTAKVVGKLASIQPPQSIHPDQTATPPLVTGVLVQNDFKLSLMAPEDLREYAGLN 562
Query: 517 TANIT--QRIT 525
T IT QR+T
Sbjct: 563 TTTITCKQRLT 573
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/550 (46%), Positives = 347/550 (63%), Gaps = 47/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ E
Sbjct: 83 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVYTEA 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSRE+DR
Sbjct: 143 DHMNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVKIDVLITESTYGIASHVPRVEREQALVKSITGILNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW HP++ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWGKHPDYQKYPIYYASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ F +I L ++D F D+G V++ASPG LQ+G+SR+L + W + KN
Sbjct: 323 ASGDGSGKGGPWDFNYIRSLKNLDRFDDLGGCVMLASPGMLQNGVSRELLERWAPNDKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEV------TLMNGLTA----------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ T+ N P V SF+A
Sbjct: 383 VIITGYSVEGTMAKQIMQEPDQIQAVMSRTMANARRGPGGDGEKFLIPRRCSVQEYSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ KI +PKNC+ + +
Sbjct: 443 HVDGTENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNANKSVKAKIFSPKNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAEKTPEVGET---------VSGILVKKGFTYQIMAPDDLHIFSQLS 516
F +K AK +G+LA P T ++G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKQDKTAKVVGKLATIQPPTKSTLEDGQNATLITGVLVQNDFKLSLMAPEDLREYAGLN 562
Query: 517 TANIT--QRI 524
T IT QR+
Sbjct: 563 TTTITCKQRL 572
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/568 (44%), Positives = 356/568 (62%), Gaps = 59/568 (10%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRS + YKGKT++ D G+HPAY G+AALP++DE D
Sbjct: 15 DEPVD-PSDELLFYCLGGGNEVGRSSHIIQYKGKTVMLDAGMHPAYDGLAALPFYDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +DVLLI+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V +S
Sbjct: 74 STVDVLLISHFHIDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNISSSSE 133
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D + +IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+++L+T
Sbjct: 134 SRIQLYTEADHLSTFPQIEAIDYYTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKILFT 193
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL +AE+P+ D+ I EST+G+ H PR RE I I++GGR
Sbjct: 194 GDYSREEDRHLISAEVPKNVKVDVLITESTFGIASHVPRLEREAALMKSITGIINRGGRA 253
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW+ HPEF IPIYYAS +A+KCM VYQTY+ +MN+ I+
Sbjct: 254 LLPVFALGRAQELLLILDEYWAKHPEFQKIPIYYASNIARKCMVVYQTYVYAMNDNIKRL 313
Query: 309 F-------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
F + + P+ FK++ L S++ F DVG V++ASPG +Q+G+SR+L +
Sbjct: 314 FRERMEEAERNGDASKAGPWDFKYVRSLKSLERFDDVGSCVMLASPGMMQNGVSRELLER 373
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM---------------NGLTAPLNMQV 400
W D++N ++ GY VEGT+ K I+ EP+++ + + P V
Sbjct: 374 WAPDQRNGVIMTGYSVEGTMGKMILHEPEQIPAVMTRANVARRGPNREGEQVLLPRRCSV 433
Query: 401 HYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCN--TKIITPK 458
SF+AH D + F++E+ P +ILVHGE H M RLK+KL++ AD K+ +P
Sbjct: 434 QEFSFAAHVDGTENREFIEEVSAPVVILVHGEKHNMMRLKSKLLSLNADKKQPVKVFSPA 493
Query: 459 NCQSVEMYFNSEKMAKTIGRLAEKTP----------------EVG-------ETVSGILV 495
NC+ + + F ++K+AK +G+LA+ P E G + +SG+LV
Sbjct: 494 NCEELRIPFKADKIAKVVGKLAQIPPPMPHRPKQEDGTDDAREGGVEEERQTQLISGVLV 553
Query: 496 KKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ F +MAP+DL ++ L+T I R
Sbjct: 554 QNDFKMSLMAPEDLREYAGLTTTTILCR 581
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/552 (46%), Positives = 350/552 (63%), Gaps = 48/552 (8%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 22 ADELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 81
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDE 137
I+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S +++ E
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD + IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ +L+TGDYSRE+D
Sbjct: 142 QDHLNTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQD 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I ESTYGV H PR RE+ I +++GGRVL+P FALG
Sbjct: 202 RHLVSAEVPKGVKIDVLITESTYGVASHIPRLEREQALMKSITGILNRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW H E+ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 262 RAQELLLILDEYWGKHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEA 321
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
P+ FK I L SID F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 322 EASGDAAGKGGPWDFKFIRSLKSIDRFDDVGGCVMLASPGMLQNGVSRELLERWAPSEKN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFS 406
+I GY VEGT+AK ++ EP ++ +M +A P V SF+
Sbjct: 382 GVIITGYSVEGTMAKQLMQEPDQIQAVMTRSSAGGRRAPGGDAEKVMIPRRCTVQEFSFA 441
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPKNCQSVE 464
AH D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ +
Sbjct: 442 AHVDGTENREFIEEVGAPVVILVHGEVHNMMRLKSKLLSLNANKTEKVKVYSPRNCEELR 501
Query: 465 MYFNSEKMAKTIGRLA----------EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQ 514
+ F ++K AK +G+LA + + + ++G+LV+ F +MAP+DL ++
Sbjct: 502 IPFKTDKTAKVVGKLASIPQPMKMPKDDNAQEPQLITGVLVQNDFKMSLMAPEDLREYAG 561
Query: 515 LSTANIT--QRI 524
L+T IT QR+
Sbjct: 562 LTTTTITCKQRL 573
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/556 (45%), Positives = 352/556 (63%), Gaps = 45/556 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELGFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE +PIYY A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 FA--------------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-----------------PLN 397
W +++N V+ GY VEGT+AK +++EP+++ + A P
Sbjct: 375 RWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRAASGLARRGGNDEEQKVMIPRR 434
Query: 398 MQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKII 455
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K+
Sbjct: 435 CTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKVY 494
Query: 456 TPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDLHI 511
TP NC+ V + F +K+AK +G+LA+ P + G ++G+LV+ GF +MAPDDL
Sbjct: 495 TPANCEEVRIPFKKDKIAKVVGKLAQIAPPSEQDDGHLMAGVLVQNGFNLSLMAPDDLRE 554
Query: 512 FSQLSTANIT--QRIT 525
++ L+T IT Q IT
Sbjct: 555 YAGLTTTTITCKQHIT 570
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/556 (45%), Positives = 352/556 (63%), Gaps = 45/556 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELGFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE +PIYY A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWEKHPELQKVPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 FA--------------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSISAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-----------------PLN 397
W +++N V+ GY VEGT+AK +++EP+++ + A P
Sbjct: 375 RWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRAASGLARRGGNDEEQKVMIPRR 434
Query: 398 MQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKII 455
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K+
Sbjct: 435 CTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKVY 494
Query: 456 TPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDLHI 511
TP NC+ V + F +K+AK +G+LA+ P + G ++G+LV+ GF +MAPDDL
Sbjct: 495 TPANCEEVRIPFKKDKIAKVVGKLAQIAPPSEQDDGHLMAGVLVQNGFNLSLMAPDDLRE 554
Query: 512 FSQLSTANIT--QRIT 525
++ L+T IT Q IT
Sbjct: 555 YAGLTTTTITCKQHIT 570
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/551 (46%), Positives = 350/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQ 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DR
Sbjct: 143 DHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW H +F PIYYAS LA+KCM +YQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 ASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTL-----MNG-----------LTAPLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ M G + P V SF+A
Sbjct: 383 VIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKVLIPRRCSVQEYSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ + +
Sbjct: 443 HVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLSLNANKTAKVKVYSPRNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAEKTP---------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
F ++K+AK +G+LA P V+G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKADKIAKVVGKLACIQPPQSIHPDQTATPPLVTGVLVQNDFKLSLMAPEDLREYAGLN 562
Query: 517 TANIT--QRIT 525
T IT QR+T
Sbjct: 563 TTTITCKQRLT 573
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/566 (45%), Positives = 352/566 (62%), Gaps = 55/566 (9%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+LI LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D
Sbjct: 16 DEPVD-PSDELIFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S +DVLLI+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S
Sbjct: 75 STVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQT 134
Query: 134 ---LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ EQD + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +TG
Sbjct: 135 TQPLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTG 194
Query: 191 DYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I + +++GGR L
Sbjct: 195 DYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITNILNRGGRAL 254
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQELLLILDEYW H EF PIYYAS LAKKCM +YQTY+ +MN+ I+ F
Sbjct: 255 LPVFALGRAQELLLILDEYWGKHSEFQKYPIYYASNLAKKCMLIYQTYVGAMNDNIKRLF 314
Query: 310 -------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIW 356
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+LF+ W
Sbjct: 315 RERMAEAETSGEAGAGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELFERW 374
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM----------------NGLTAPLNMQV 400
KN +I GY VEGT+A+ I+ EP+++ + + PL V
Sbjct: 375 APSDKNGVIITGYSVEGTMARQIMKEPEQIQAVMSRSIAGARRAPGGDGEKVMIPLRCSV 434
Query: 401 HYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNT--KIITPK 458
SF+AH D + F++E+ P +ILVHGE M RLK+KL++ A+ T K+ +P+
Sbjct: 435 QEYSFAAHVDGVENREFIEEVAAPVVILVHGEQTNMMRLKSKLLSLNANKTTKVKVYSPR 494
Query: 459 NCQSVEMYFNSEKMAKTIGRLAEKTP-----------------EVGETVSGILVKKGFTY 501
N + + + F ++K+AK +G+LA P G VSG+LV+ F
Sbjct: 495 NTELLRIPFKADKIAKVVGKLASIPPPRPIVPSDEGGKDAEANAAGPLVSGVLVQNDFKL 554
Query: 502 QIMAPDDLHIFSQLSTANI--TQRIT 525
+MAP+DL ++ L+T I QR+T
Sbjct: 555 SLMAPEDLREYAGLNTTTIICRQRLT 580
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/551 (46%), Positives = 348/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L +T F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLARTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPIYTEQ 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++I G+ + +TGDYSRE+DR
Sbjct: 143 DHLSTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIGGLNIFFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW H +F PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWGKHSDFQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 ASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTL-----MNG-----------LTAPLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ M G + P V SF+A
Sbjct: 383 VIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKVLIPRRCSVQEYSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ + +
Sbjct: 443 HVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLSLNANKTAKVKVYSPRNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAEKTP---------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
F ++K AK +G+LA P V+G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKADKTAKVVGKLASIQPPQSIHLDPATAPPLVTGVLVQNDFKLSLMAPEDLREYAGLN 562
Query: 517 TANIT--QRIT 525
T IT QR+T
Sbjct: 563 TTTITCKQRLT 573
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/557 (45%), Positives = 350/557 (62%), Gaps = 53/557 (9%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+A+LP+FD+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLASLPFFDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 82 SHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQ 141
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T V+ I+ Y AGHVLGAAMF+++IAG+++++TGDYSRE DR
Sbjct: 142 DHLSTFRQIEAIDYHTTHTVSSIRITPYPAGHVLGAAMFLIEIAGLKIMFTGDYSRELDR 201
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +A +P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALGR
Sbjct: 202 HLVSATVPKGVKVDVLITESTYGIASHVPRLEREQALMKSITGILNRGGRVLMPVFALGR 261
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA------- 310
AQELLLILDEYWS H +F N PIYYAS LAKKCM VYQTY +MN+ I+ +A
Sbjct: 262 AQELLLILDEYWSKHSDFQNYPIYYASNLAKKCMVVYQTYTGAMNDNIKRLYAERAKEAE 321
Query: 311 -------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ F+ I L ++D F D+G V++ASPG LQ+G+SR+L + W KN
Sbjct: 322 ATGNSAGGGGPWDFRFIRSLKNLDRFEDIGGCVMLASPGMLQNGVSRELLERWAPSDKNG 381
Query: 364 CVIPGYVVEGTLAKTIISEPKEV------TLMNG-----------LTAPLNMQVHYISFS 406
+I GY VEGT+AK I+ EP + +L G + P V SF+
Sbjct: 382 VIITGYSVEGTMAKQIMQEPDHIQAVMSRSLAGGGRRAPGADSEKVMIPRRCSVQEFSFA 441
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT----ELADCNTKIITPKNCQS 462
AH D + F++E+ P +ILVHGE H M RLK+KL++ ++ K+ +P+NC+
Sbjct: 442 AHVDGTENREFIEEVNAPAVILVHGEQHNMMRLKSKLLSLNAGKVDKDKMKVYSPRNCEE 501
Query: 463 VEMYFNSEKMAKTIGRLAEKT------------PEVGETVSGILVKKGFTYQIMAPDDLH 510
+ + F ++K+AK +G+LA T G ++G+LV+ F +MAP+DLH
Sbjct: 502 LRIPFKTDKIAKVVGKLASVTLPTQLLQDQQEHQTAGPILTGVLVQNDFKLSLMAPEDLH 561
Query: 511 IFSQLSTANI--TQRIT 525
++ L+T I QR+T
Sbjct: 562 EYAGLTTTTIICRQRLT 578
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/560 (45%), Positives = 353/560 (63%), Gaps = 49/560 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+V+ +
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSD 133
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ Y AGHVLGAAMF++ IAG+ +L+T
Sbjct: 134 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILFT 193
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL A +P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 194 GDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 253
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 254 LMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 313
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ FK++ L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 314 FRQRMAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 373
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-------------TLMNG------LTAP 395
W +++N V+ GY VEGT+AK +++EP ++ T MNG + P
Sbjct: 374 RWAPNERNGVVMTGYSVEGTMAKQLLNEPDQIHAVMSRAATGMGRTRMNGNDEEQKIMIP 433
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K
Sbjct: 434 RRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVK 493
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV------GETVSGILVKKGFTYQIMAPD 507
+ TP NC+ V + F +K+AK +G+LA+ T G ++G+LV+ GF +MAPD
Sbjct: 494 VYTPANCEEVRIPFRKDKIAKVVGKLAQTTLPTDNEDGDGPLMAGVLVQNGFDLSLMAPD 553
Query: 508 DLHIFSQLSTANIT--QRIT 525
DL ++ L+T IT Q IT
Sbjct: 554 DLREYAGLATTTITCKQHIT 573
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 255/550 (46%), Positives = 349/550 (63%), Gaps = 47/550 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTEQ 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ +L+TGDYSRE+DR
Sbjct: 143 DHLNTFPMIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVRVDVLITESTYGIASHVPRLEREQALMKSITGVLNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW H ++ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWGKHRDYQRYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK I L SID F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 ASGDGAGKGGPWDFKFIRSLKSIDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP+++ +M +A P V SF+A
Sbjct: 383 VIITGYSVEGTMAKQIMQEPEQIQAVMTRSSAGGRRAPGGDSEKVMIPRRCTVQEYSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ + +
Sbjct: 443 HVDGTENREFIEEVSAPVVILVHGEVHNMMRLKSKLLSLNANKTDKVKVFSPRNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAE---------KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
F ++K AK +G+LA E + ++G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKTDKTAKVVGKLASIPQPMKIAADDSEEPQLITGVLVQNDFKMSLMAPEDLREYAGLT 562
Query: 517 TANIT--QRI 524
T I QR+
Sbjct: 563 TTTIACKQRL 572
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/558 (45%), Positives = 353/558 (63%), Gaps = 47/558 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 133
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ + AGHVLGAAMF+V IAG+ +L+T
Sbjct: 134 QRTTLYTENDHLSTLPLIETIDFNTTHTINSIRITPFPAGHVLGAAMFLVSIAGLNILFT 193
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 194 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKAITGVLNRGGRV 253
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW HP+ IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 254 LMPVFALGRAQELLLILEEYWETHPDLQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 313
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A++ P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 314 FRQRMAEAEASGDKSASAGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 373
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM----------NGLTA---------P 395
W +++N V+ GY VEGT+AK +++EP ++ + GL + P
Sbjct: 374 RWAPNERNGVVMTGYSVEGTMAKQLLNEPDQIPAVMSRAPGGLSRRGLASGDEEQKIMIP 433
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++++ P +ILVHGE H+M RLK+KL++ AD K
Sbjct: 434 RRCTVDEISFAAHVDGVENRNFIEQVAAPVVILVHGEKHQMMRLKSKLLSLNADKTVKVK 493
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAE----KTPEVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC+ V + F +K+AK +G+LA+ + G +SG+LV+ GF +MAPDDL
Sbjct: 494 VYTPANCEEVCIPFRKDKIAKVVGKLAQLAAPSEQDDGRLMSGVLVQNGFNLSLMAPDDL 553
Query: 510 HIFSQLSTANIT--QRIT 525
++ L+T IT Q IT
Sbjct: 554 REYAGLTTTTITCKQHIT 571
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/558 (44%), Positives = 351/558 (62%), Gaps = 54/558 (9%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDE 137
I+HFH+DHAASLPY L KT F+GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+D ++ IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSREED
Sbjct: 141 EDHLKTFPMIEAIDYNTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREED 200
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A++P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALG
Sbjct: 201 RHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALG 260
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW H E+ PIYYAS LA+KCM VYQTY+ SMN+ I+ F
Sbjct: 261 RAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAES 320
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
P+ F+ I L S+D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 321 ESSGDGAGKGGPWDFRFIRSLKSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKN 380
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLM----------------NGLTAPLNMQVHYISFS 406
+I GY VEGT+AK ++ EP+++ + + P V SF+
Sbjct: 381 GVIITGYSVEGTMAKQLLQEPEQIQAVMSRNIAGARRGPGGDAEKVMIPRRCTVQEFSFA 440
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVE 464
AH D + F++E+ P +ILVHGE H M RLK+KL++ A + K+ +P+NC+ +
Sbjct: 441 AHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNATKEHKVKVFSPRNCEELR 500
Query: 465 MYFNSEKMAKTIGRLAEKTPEVGET----------------VSGILVKKGFTYQIMAPDD 508
+ F ++K+AK +G+LA P + E ++G+LV+ F +MAP+D
Sbjct: 501 IPFKTDKVAKVVGKLASIPPSLKEAKTGHDGPLPSSTEPQLITGVLVQNDFKMSLMAPED 560
Query: 509 LHIFSQLSTANIT--QRI 524
L ++ L+T I QR+
Sbjct: 561 LREYAGLTTTTIACKQRL 578
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 251/558 (44%), Positives = 351/558 (62%), Gaps = 54/558 (9%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDE 137
I+HFH+DHAASLPY L KT F+GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+D ++ IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSREED
Sbjct: 141 EDHLKTFPMIEAIDYNTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREED 200
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A++P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALG
Sbjct: 201 RHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALG 260
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW H E+ PIYYAS LA+KCM VYQTY+ SMN+ I+ F
Sbjct: 261 RAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAES 320
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
P+ F+ I L S+D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 321 ESSGDGAGKGGPWDFRFIRSLKSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKN 380
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLM----------------NGLTAPLNMQVHYISFS 406
+I GY VEGT+AK ++ EP+++ + + P V SF+
Sbjct: 381 GVIITGYSVEGTMAKQLLQEPEQIQAVMSRNIAGARRGPGGDAEKVMIPRRCTVQEFSFA 440
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVE 464
AH D + F++E+ P +ILVHGE H M RLK+KL++ A + K+ +P+NC+ +
Sbjct: 441 AHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNATKEHKVKVFSPRNCEELR 500
Query: 465 MYFNSEKMAKTIGRLAEKTPEVGET----------------VSGILVKKGFTYQIMAPDD 508
+ F ++K+AK +G+LA P + E ++G+LV+ F +MAP+D
Sbjct: 501 IPFKTDKVAKVVGKLASIPPSLKEAKTAHDGPLPPSTEPQLITGVLVQNDFKMSLMAPED 560
Query: 509 LHIFSQLSTANIT--QRI 524
L ++ L+T I QR+
Sbjct: 561 LREYAGLTTTTIACKQRL 578
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 259/559 (46%), Positives = 352/559 (62%), Gaps = 48/559 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHILEYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +DVLLI+HFH+DH+++LPY L KT FKGRVFMT AT+AIYK L+ D V+VS S
Sbjct: 75 STVDVLLISHFHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E+D ++ IE +DF+ T +NGI+ Y AGHVLGAAMF +DIAG+ L+T
Sbjct: 135 QRTTLYTERDHLSTLPMIETIDFYTTHTINGIRITPYPAGHVLGAAMFKIDIAGLVTLFT 194
Query: 190 GDYSREEDRHLRAAELPQFSP-DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL A +P + D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAAVPSGTKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE PIYY +A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKFPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------ANSN------PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A+ N P+ F+ + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGNKSVSVGPWDFRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA------------------- 394
W +N V+ GY VEGT+AK +++EP ++ +M+ ++
Sbjct: 375 RWAPSDRNGVVMTGYSVEGTMAKGLLNEPDQIPAVMSKVSTGHGRGRVPGVNDEDQKVMI 434
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNT 452
P V +SF+AH D + TF++E+ P +ILVHGE H+M RLK+KL++ AD
Sbjct: 435 PRRCTVDEVSFAAHVDGVENRTFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADKAVKV 494
Query: 453 KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDD 508
K+ TP NC V + F +K+AK +G+LAE P + + ++G+LV+ GF +MAPDD
Sbjct: 495 KVYTPANCDEVRIPFKKDKIAKVVGKLAEVAPPSENDDSQLMAGVLVQNGFNLSLMAPDD 554
Query: 509 LHIFSQLSTANIT--QRIT 525
L ++ L+T IT Q IT
Sbjct: 555 LQEYAGLTTTTITCKQHIT 573
>gi|405124298|gb|AFR99060.1| endoribonuclease YSH1 [Cryptococcus neoformans var. grubii H99]
Length = 770
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 247/530 (46%), Positives = 345/530 (65%), Gaps = 19/530 (3%)
Query: 4 VGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
V QPP DAP L IT LGAG EVGRSC + ++GK I+ D G+HPA G+
Sbjct: 18 VLQPPD---EDAP------SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIG 68
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLT 120
ALP+ DE+D S +D +LITHFH+DHAA+LPY +EKT FK G+V+MTHATKAIY L +
Sbjct: 69 ALPFIDELDWSTVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMM 128
Query: 121 DYVKVSKVS--VEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMF 177
D V+++ + L+DE D+ S +D+HQ + + G++F Y AGHVLGA+MF
Sbjct: 129 DTVRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMF 188
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+++IAG+ +LYTGDYSREEDRHL AE+P PD+ I EST+GV R +E++FT +
Sbjct: 189 LIEIAGLMILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFTTL 248
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ + + +GGR L+P + G QEL L+LDEYW +HPE NIP+Y+AS L ++ M VY+TY
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPVYFASSLFQRGMRVYKTY 308
Query: 298 ILSMNERIRNQFA-NSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDI 355
+ +MN IR++FA NPF F+ + L + GP V+M+SP + GLSR L +
Sbjct: 309 VHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEE 368
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
W D KN ++ GY +EGT+A+T++SEP + + G P + V ISF AH DYAQ S
Sbjct: 369 WAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNIPRRLTVKEISFGAHVDYAQNS 428
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMA 473
F++E+ +++LVHGE+ +MGRL+ L A +I TPKNC+ + + F E+M
Sbjct: 429 KFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTLTFRQERMV 488
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
K IG LA PE G +V G+LV K F+Y +++P DLH F+ LST+ I Q+
Sbjct: 489 KAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQK 538
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/569 (44%), Positives = 351/569 (61%), Gaps = 58/569 (10%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D
Sbjct: 16 DEPVD-PSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL 74
Query: 74 SAIDVLLITH---------------FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL 118
S +DVLLI+ FH+DHAASLPY L KT F+GRVFMTH TKAIYK L
Sbjct: 75 STVDVLLISQTLHDASSLLLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWL 134
Query: 119 LTDYVKVSKVSVED--MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM 176
+ D V+V + L+ EQD + +IE +D+H T ++ I+ Y AGHVLGAAM
Sbjct: 135 IQDSVRVGNTASNSATQLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAM 194
Query: 177 FMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFT 235
F+++IAG+ + +TGDYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+
Sbjct: 195 FLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGLKIDVLITESTYGIASHVPRLEREQALM 254
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
I +++GGR L+P FALGRAQELLLILDEYW HPEF PIYYAS LA+KCM +YQ
Sbjct: 255 KSITGILNRGGRALLPVFALGRAQELLLILDEYWGKHPEFQRFPIYYASNLARKCMVIYQ 314
Query: 296 TYILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASP 341
TY+ +MN+ I+ F + P+ FK+I L ++D F DVG V++ASP
Sbjct: 315 TYVGAMNDNIKRLFRERMAEAEASGDAAGKNGPWDFKYIRSLKNLDRFDDVGGCVMLASP 374
Query: 342 GGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM------------ 389
G LQ+G+SR+LF+ W +KN +I GY VEGT+A+ I+ EP ++ +
Sbjct: 375 GMLQNGVSRELFERWAPSEKNGVIITGYSVEGTMARQIMQEPDQIQAVMSRSIAGARRGP 434
Query: 390 ----NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ P V SF+AH D + F++E+ P +ILVHGE H M RLK+KL++
Sbjct: 435 GADSEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKSKLLS 494
Query: 446 ELADCNT--KIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP-----EVGETVSGILVKKG 498
A T K+ +P+NC+ + + F ++K AK +G+LA P V+G+LV+
Sbjct: 495 LNASKTTKVKVYSPRNCEELRIPFKADKTAKVVGKLASIPPPKDIDASAPLVTGVLVQND 554
Query: 499 FTYQIMAPDDLHIFSQLSTANIT--QRIT 525
F +MAP+DL ++ L+T IT QR+T
Sbjct: 555 FKLSLMAPEDLREYAGLNTTTITCKQRLT 583
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 263/568 (46%), Positives = 354/568 (62%), Gaps = 67/568 (11%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG G+EVGRSC + YKGKT++ D GIHPAY G+AALP++DE D S +DVLLI
Sbjct: 24 DELTFVALGGGSEVGRSCHIIQYKGKTVMLDAGIHPAYDGLAALPFYDEFDLSTVDVLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-----SKVSVED---- 132
THFH+DH ASLPY L KT F GRV+MTH TKAIYK L+TD V+V S S D
Sbjct: 84 THFHMDHVASLPYVLAKTPFAGRVYMTHPTKAIYKHLMTDSVRVQNTHTSATSGTDGYVA 143
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
LF+EQDI +M +I+ + F+ T NGIKF Y AGHVLGA M++++IAG+ +L+TGDY
Sbjct: 144 QLFNEQDILTTMPQIQTISFNTTHIHNGIKFTPYPAGHVLGACMYLIEIAGLNILFTGDY 203
Query: 193 SREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
SRE++RHL A +P+ + D I EST+G+ H PR RE I +++GGR L+P
Sbjct: 204 SREDNRHLMPASIPRHVNVDCLITESTFGISTHVPRAERETALMRSITGILNRGGRALLP 263
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
FALG AQELLLIL++YW+ HPE+ PIY+AS LA+KCM VYQTYI +MNE IR +F
Sbjct: 264 TFALGGAQELLLILEDYWARHPEYQRFPIYFASSLARKCMVVYQTYIDAMNENIRTKFQA 323
Query: 310 ANSN------PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
A +N P+ F+HI L S++ F DVG V++ASPG LQ+G+SR L + W D KN
Sbjct: 324 AQANPDGVGGPWDFQHIRSLKSLERFDDVGGCVMLASPGMLQNGVSRSLLERWAPDAKNG 383
Query: 364 CVIPGYVVEGTLAKTIISEPKEV----------TLMNG--------LTAPLNMQVHYISF 405
+I GY VEGT+AK+I+ EP + T++ G + P V SF
Sbjct: 384 VIITGYSVEGTMAKSIMLEPDSIPAVMTNRQPQTVILGKRTGADENVMIPRRCTVQEFSF 443
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+AH D + TF++E+ P +ILVHGE H M RLK++L L+ K+ +P NC+ + +
Sbjct: 444 AAHVDGQENRTFIEEVNAPVVILVHGEKHNMNRLKSRL---LSLQKMKVYSPANCEELHI 500
Query: 466 YFNSEKMAKTIGRLA--------------------------EKTPEVGETVSGILVKKGF 499
F +K A+ +GRLA +K + G+ VSG+LV+ F
Sbjct: 501 PFRQDKYARVVGRLANEISPPTAAQQPSPPASDEEGNESEPKKRKDEGQLVSGVLVQNDF 560
Query: 500 TYQIMAPDDLHIFSQLSTANI--TQRIT 525
+MAP+DL ++ L+T I Q+IT
Sbjct: 561 KLSLMAPEDLKEYAGLTTTTILCRQKIT 588
>gi|429966185|gb|ELA48182.1| hypothetical protein VCUG_00420 [Vavraia culicis 'floridensis']
Length = 669
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 237/470 (50%), Positives = 313/470 (66%), Gaps = 28/470 (5%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ L I PLGAGNEVGRSC++++YK +IL DCG+HPAY+G ++LP+ D I+ S +D + I
Sbjct: 5 ENLTIMPLGAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTSSLPFLDLINLSTVDAVFI 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHA +LPY EKT F G+VFMTH TKAI + LL DY+++ + E + E+D+N
Sbjct: 65 THFHLDHAGALPYLTEKTNFAGKVFMTHPTKAILRWLLNDYIRIINANTEIDFYSEKDLN 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
DKI +D++QTV V K AGHVLGAAMFM++ V++LYTGDYS EEDRHL+
Sbjct: 125 NCYDKIIAIDYNQTVVVKDFKVSALNAGHVLGAAMFMIENDRVKILYTGDYSTEEDRHLK 184
Query: 202 AAELPQFSP------------------DICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
A+ S D+ I ESTYGVQ H PR RE+RFT V++ ++
Sbjct: 185 GADTAWISKYGNMDEKEHSNDETVHHLDVLICESTYGVQCHLPREERERRFTQVVNDIVT 244
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GG+ L+P FALGRAQELLLIL++YW +P HNIPIYYAS LA +C+++YQ Y MN
Sbjct: 245 RGGKCLLPVFALGRAQELLLILEDYWDRNPHLHNIPIYYASALANRCLSIYQAYTHMMNL 304
Query: 304 RIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+I+ + F FKHI L S+D+ VVMASPG LQSGLSR+LF+ WC D N
Sbjct: 305 KIK-----KDAFNFKHIRNLKSVDNHLIKNACVVMASPGMLQSGLSRELFESWCEDANNG 359
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
VIPGY V+GTLAK I++EPKE+ MNG LNM+V YISFSAH DY Q ++F+++ P
Sbjct: 360 TVIPGYCVQGTLAKEIMTEPKEIVAMNGHRLRLNMRVEYISFSAHVDYVQNTSFIEKCTP 419
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMA 473
++LVHGE +EM RLK L + + ++ KN + E+ E +A
Sbjct: 420 RLVMLVHGEVNEMMRLKAALEKKHS-----VLALKNGEQHEIKIRKESVA 464
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 249/552 (45%), Positives = 350/552 (63%), Gaps = 45/552 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LL++HFH+DH+++LPY L KT FKGRV THATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ Y AGHVLGAAMF+V IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFYTTHTINSIRVTPYPAGHVLGAAMFLVSIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW HPE+ +PIYY +A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILEEYWERHPEYQKVPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F----------ANSN----PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F N N P+ F+++ L S++ F D+G V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGNKNVAAGPWDFRYVRSLRSLERFDDIGSCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------------------P 395
W ++N V+ GY VEGT+AK +++EP+++ +A P
Sbjct: 375 RWAPSERNGVVMTGYSVEGTMAKQLLNEPEQIPATMSKSAAGPGSRANPMADEDQKVMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
+ ISF+AH D + F++++ P +ILVHGE H+M RLK+KL++ A+ K
Sbjct: 435 RRCTIDEISFAAHVDGVENRNFIEQVAAPVVILVHGEKHQMMRLKSKLLSLNAEKTNKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC+ + + F +K+AK +G+LAE+ E G+ ++G+LV+ GF +MAP+DL
Sbjct: 495 VYTPANCEEIRIPFRKDKIAKVVGKLAEEAQPTEIEGGKLMAGVLVQNGFDLSLMAPEDL 554
Query: 510 HIFSQLSTANIT 521
++ L+T IT
Sbjct: 555 REYAGLTTTTIT 566
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/564 (45%), Positives = 350/564 (62%), Gaps = 60/564 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELVFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 T---------HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+ HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S
Sbjct: 83 SQSELRYPMRHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQ 142
Query: 133 M---LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +T
Sbjct: 143 TTQPLYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFT 202
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE+ I + +++GGR
Sbjct: 203 GDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITNILNRGGRA 262
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW H EF PIYYAS LAKKCM +YQTY+ +MN+ I+
Sbjct: 263 LLPVFALGRAQELLLILDEYWGKHAEFQKYPIYYASNLAKKCMLIYQTYVGAMNDNIKRL 322
Query: 309 F-------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
F P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+LF+
Sbjct: 323 FRERMAEAETSGGAGAGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELFER 382
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM----------------NGLTAPLNMQ 399
W + KN +I GY VEGT+A+ I+ EP+++ + + PL
Sbjct: 383 WAPNDKNGVIITGYSVEGTMARQIMKEPEQIQAVMSRSIAGARRAPGGDGEKVMIPLRCS 442
Query: 400 VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITP 457
V SF+AH D + F++E+ P +ILVHGE M RLK+KL++ A+ K+ +P
Sbjct: 443 VQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQTNMMRLKSKLLSLNANKTVKVKVYSP 502
Query: 458 KNCQSVEMYFNSEKMAKTIGRLAEKTP--------------EVGETVSGILVKKGFTYQI 503
+N + + + F ++K+AK +G+LA P G VSG+LV+ F +
Sbjct: 503 RNTEELRIPFKADKIAKVVGKLASIPPPRPIAASDDADTGVAGGPLVSGVLVQNDFKLSL 562
Query: 504 MAPDDLHIFSQLSTANIT--QRIT 525
MAP+DL ++ L+T IT QR+T
Sbjct: 563 MAPEDLREYAGLNTTTITCRQRLT 586
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/567 (45%), Positives = 354/567 (62%), Gaps = 64/567 (11%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSQVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S +++ EQ
Sbjct: 82 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQLVYTEQ 141
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+ +L+TGDYSRE+DR
Sbjct: 142 DHLNTFPMIEAIDYYTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSREQDR 201
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +A++P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALGR
Sbjct: 202 HLVSAQVPKGVKIDVLITESTYGIATHVPRLEREQALMKSITGILNRGGRVLMPVFALGR 261
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW+ H E+ PIYYAS LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 262 AQELLLILDEYWAKHKEYQKYPIYYASNLARKCMLVYQTYVGAMNDNIKRLFRERMAEAE 321
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK I L SID F DVG V++ASPG LQ+G+SR+L + W ++KN
Sbjct: 322 ASGDSAGKGGPWDFKFIRSLKSIDRFEDVGGCVMLASPGMLQNGVSRELLERWAPNEKNG 381
Query: 364 CVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA---------------PLNMQVHYISFSA 407
+I GY VEGT+AK ++ EP+++ +M +A P V SF+A
Sbjct: 382 VIITGYSVEGTMAKQLMQEPEQIQAVMTRSSAGGRRGPGGESEKVMIPRRCTVQEFSFAA 441
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +PKNC+ + +
Sbjct: 442 HVDGNENREFIEEVGAPVVILVHGEVHNMMRLKSKLLSLNANKTNKVKVYSPKNCEELRI 501
Query: 466 YFNSEKMAKTIGRLAE-----KTPEV------GET---------------VSGILVKKGF 499
F ++K AK +G+LA K P+ G T V+G+LV+ F
Sbjct: 502 PFKTDKTAKVVGKLASIPQPLKMPKFDAAAADGSTTITAAATGPDSEPRIVTGVLVQNDF 561
Query: 500 TYQIMAPDDLHIFSQLSTANIT--QRI 524
+MAP+DL ++ L+T I QR+
Sbjct: 562 KMSLMAPEDLREYAGLTTTTIACKQRL 588
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/552 (45%), Positives = 346/552 (62%), Gaps = 45/552 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LL++HFH+DH+++LPY L KT FKGRV THATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ Y AGHVLGAAMF+V IAG+ +L+T
Sbjct: 135 QRTSLYTEHDHLSTLPLIETIDFYTTHTINSIRVTPYPAGHVLGAAMFLVSIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPRGIKIDVLITESTFGISSNPPRLEREAALMKSITGILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW HPEF IPIYY +A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILEEYWERHPEFQKIPIYYIGNMARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F----------ANSN----PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F N N P+ F+++ L S++ F D+G V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGNKNVAAGPWDFRYVRSLRSLERFDDIGSCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------------------P 395
W ++N V+ GY VEGT+AK +++EP+++ +A P
Sbjct: 375 RWAPSERNGVVMTGYSVEGTMAKQLLNEPEQIPATMSKSAAGPGSRVNPMADEDQKVMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
+ ISF+AH D + F++++ P +ILVHGE H+M RLK+KL++ D K
Sbjct: 435 RRCTIDEISFAAHVDGVENRDFIEQVAAPVVILVHGEKHQMMRLKSKLLSLNVDKTVKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC + + F +K+AK +G+LAE + + ++G+LV+ GF +MAP+DL
Sbjct: 495 VYTPANCDEIRIPFRKDKIAKVVGKLAEDAQLTENDESKLMAGVLVQNGFDLSLMAPEDL 554
Query: 510 HIFSQLSTANIT 521
++ L+T IT
Sbjct: 555 REYAGLTTTTIT 566
>gi|392575747|gb|EIW68879.1| hypothetical protein TREMEDRAFT_44189 [Tremella mesenterica DSM
1558]
Length = 738
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/528 (46%), Positives = 346/528 (65%), Gaps = 19/528 (3%)
Query: 13 RDAP--VSREGD---QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY 67
R AP + +EG+ L IT LGAG EVGRSC + ++GK I+ D G+HPA+ GM +LP+
Sbjct: 9 RPAPPQIPQEGEDIPSLKITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAHPGMGSLPF 68
Query: 68 FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVK 124
DE+D S +D +LITHFH+DHAA+LPY +E+T FK G+V+MTHATKAIY L + D V+
Sbjct: 69 IDEVDWSTVDAILITHFHVDHAAALPYIMERTNFKDGAGKVYMTHATKAIYGLTMMDAVR 128
Query: 125 VSKVSVEDM--LFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDI 181
+S + ++ L+ E D+ S +D+HQ + V+G ++F Y AGHVLGA+MFM++I
Sbjct: 129 ISDQNADNAGRLYTEADVQSSWQNTIAVDYHQDIVVSGGLRFTPYHAGHVLGASMFMIEI 188
Query: 182 AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHST 241
AG+++LYTGDYSREEDRHL AE+P PD+ I EST+GV R +E++FT ++ +
Sbjct: 189 AGLKILYTGDYSREEDRHLVIAEVPPVKPDVMICESTFGVHTLPDRKEKEEQFTTLVSNI 248
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+ +GGR L+P + G QEL L+LDEYW +HPE NIPI++AS L ++ M VY+TY+ +M
Sbjct: 249 VKRGGRCLMPIPSFGNGQELALLLDEYWHDHPELQNIPIFFASGLFQRGMRVYKTYVHTM 308
Query: 302 NERIRNQFA-NSNPFKFKHISPLNS---IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
N IR++FA NPF FK++ PL D+F P VVMAS + GLSR+L + W
Sbjct: 309 NANIRSRFARRDNPFDFKYVKPLKDGRRGDNFKS--PCVVMASAQFMSFGLSRELLEDWA 366
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 417
+KN ++ GY +EGT+A+T++ EP + + G P + V ISFSAH DY Q S F
Sbjct: 367 PGEKNGVIVTGYSIEGTMARTLLGEPDHIESLRGTKIPRRLTVKEISFSAHVDYGQNSRF 426
Query: 418 LKELMPPNIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKT 475
++E+ +I+LVHGES +M RL+ L + I TP+NC+ + + F E+ K
Sbjct: 427 IQEVGAQHIVLVHGESSQMLRLRAALRDSYSARGQEVNIHTPRNCEPLTLTFRQERQVKA 486
Query: 476 IGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
IG LA PE G V G+LV K F+Y ++ P DL F+ LST+ I Q+
Sbjct: 487 IGSLAAHRPEHGAIVKGLLVSKDFSYTLLDPKDLQDFTGLSTSTIVQK 534
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 251/526 (47%), Positives = 349/526 (66%), Gaps = 25/526 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
QL +T LGAG EVGRSC + Y+GKT++ D G+HPA+ G+A+LP+ DE+D S +DV+LIT
Sbjct: 5 QLSVTVLGAGQEVGRSCCVLRYRGKTVVCDAGVHPAHYGIASLPFIDELDWSTVDVILIT 64
Query: 83 HFHLDHAASLPYFLEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
HFHLDHAA L Y +EKT F KG+V+MT ATKA+YK ++ D++++S S E LF D
Sbjct: 65 HFHLDHAAGLTYIMEKTNFREGKGKVYMTLATKAVYKFIMQDFLRMSSSSTEP-LFSPLD 123
Query: 140 INRSMDKIEVLDFHQT-VEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
+ S I + HQ V GI F Y AGHVLGA MF++DIAG++VLYTGDYSREEDR
Sbjct: 124 FSMSFSSIITVAAHQVIVPCPGISFTPYHAGHVLGACMFLIDIAGLKVLYTGDYSREEDR 183
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A++P PD+ I ESTYGVQ H+ + REKRF D++ + + +GG VL+PAFALGRA
Sbjct: 184 HLVQAQVPSIRPDVLICESTYGVQKHEELSGREKRFVDLVTAVVKRGGHVLLPAFALGRA 243
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKF 317
QE+LLIL+E+WS +P+ H +PIYY S LAKKCMAVYQT I SMN +I+ ++ NPF F
Sbjct: 244 QEILLILEEHWSRNPDLHGVPIYYVSSLAKKCMAVYQTNISSMNSKIQERWKKQENPFVF 303
Query: 318 KHISPL----NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
K+I+ L + ++ P VV+ASPG + +G SR+L ++W D +NA ++ GY VEG
Sbjct: 304 KYITNLPQTRGAEKKVAEGPPCVVLASPGFMDNGSSRELLELWAPDPRNAVIVTGYSVEG 363
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI------- 426
T+A+ I + P E+ + G T P + V ISFSAH D Q F++++ +I
Sbjct: 364 TMARDIQNSPDEIVSLKGTTIPRRLAVEVISFSAHVDGEQNLDFIEKVKAQHIVSLLIAS 423
Query: 427 ----ILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
+L+HGES M LK +L A + +I P N +++++ F +++AK IGR+A
Sbjct: 424 SDVKVLMHGESKAMFSLKNRLEQRYAGNEEGIQIHAPWNTETLKLTFRGDRIAKAIGRIA 483
Query: 481 EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANI--TQRI 524
EK + + G+L+ K FT+ ++ P DL + LST+ I TQRI
Sbjct: 484 EKGVKEDAQIQGLLLSKDFTFTLLDPRDLEEVTGLSTSVIVQTQRI 529
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/559 (44%), Positives = 346/559 (61%), Gaps = 57/559 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPAY G++A+P++DE D S +DVLLI
Sbjct: 22 DELLFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V +S ++ E
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
QD + IE +DF+ T V+G++ Y AGHVLGAAMF+++IAG+++L+TGDYSRE+D
Sbjct: 142 QDHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSREDD 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A +P D+ I EST+G+ +H PR RE + I +++GGR L+P FALG
Sbjct: 202 RHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLMKAITDILNRGGRALLPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE IPIYY S LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 262 RAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRLFAERMAEA 321
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ FK + L S++ F D+G V++ASPG +QSG SR+L + W D +N
Sbjct: 322 EAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPGMMQSGTSRELLERWAPDPRNG 381
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTA----------------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ + T P V SF+A
Sbjct: 382 VIITGYSVEGTMAKQIVHEPDQIPAIMTRTNNNSRRPGQREGEQTMIPRRCTVQEYSFAA 441
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCN--TKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE M RL++KL++ A + TKI +P NC+ + +
Sbjct: 442 HVDGKENMEFVQEVAAPVVILVHGEKGNMTRLRSKLLSFNAQKSVPTKIYSPANCEELRI 501
Query: 466 YFNSEKMAKTIGRLAEKTPEV------------------GET---VSGILVKKGFTYQIM 504
F ++K+AK +G+LA P + GE ++G+L++ F +M
Sbjct: 502 PFKTDKIAKVVGKLASIAPPIPRSLDADGDERLNDQDSEGEKLDMIAGVLIQNDFKLSLM 561
Query: 505 APDDLHIFSQLSTANITQR 523
AP+DL ++ L+T I R
Sbjct: 562 APEDLKEYAGLTTTTIMCR 580
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/475 (49%), Positives = 329/475 (69%), Gaps = 21/475 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA +G ++ P++DE D S +D+LLI+HFHLDH
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPALTGHSSFPFYDEYDLSKVDILLISHFHLDH 78
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV----------SVEDMLFDEQ 138
AASLPY ++ TTFKGRVFMTHATKAIY+ LL D+V+V+ + L+ +
Sbjct: 79 AASLPYVMQHTTFKGRVFMTHATKAIYRWLLQDFVRVTSIGAGSRAEGSDETSTNLYTDD 138
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI S D+IE +D+H T+E++GI+F Y AGHVLGA M+ V+I G++VL+TGDYSREE+R
Sbjct: 139 DIISSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFVEIGGLKVLFTGDYSREENR 198
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +P+ EKR IH+T+++GGRVL+P F+LG A
Sbjct: 199 HLHAAEVPPTRPDILITESTFGTGTLEPKADLEKRLVQNIHATLTKGGRVLMPVFSLGNA 258
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR---NQFANSNPF 315
QELLLILDEYW + + NI +++AS LA+KCMAVYQTY MN+ IR S+PF
Sbjct: 259 QELLLILDEYWEKNEDLQNISVFFASKLARKCMAVYQTYTSIMNDNIRLSSRIGQKSSPF 318
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + FSD+GPSVV+ASPG LQ+G+SRQL + W D KN V+ GY VEGT+
Sbjct: 319 DFKYIKSIKDLGKFSDMGPSVVVASPGMLQAGVSRQLLEKWAPDPKNLVVMTGYSVEGTM 378
Query: 376 AKTIISEPKEV-TLMN-GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK +++EP + + +N +T P + V ISF+AH D+ Q S F++++ P IILVHG+S
Sbjct: 379 AKDLLNEPHTIKSAVNPDITIPRRINVSEISFAAHVDFQQNSEFIEKVAPSKIILVHGDS 438
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKM-AKTIGRLAEK 482
MGRLK+ L+++ + + K+ PKNC+ +++ ++ A+ +G LAE+
Sbjct: 439 VPMGRLKSALLSKYSARKGTEQEVKVFNPKNCEPLKIPIKGLRVAARVLGTLAEE 493
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 255/557 (45%), Positives = 349/557 (62%), Gaps = 54/557 (9%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA+ G++ALP++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAFDGLSALPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML----FDE 137
+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+VS S + E
Sbjct: 82 SHFHIDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVSSNSSSTEQSSTPYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + IE +D+H T ++ I+ AGHVLGAAMF++ I+G+ +L+TGDYS E D
Sbjct: 142 ADHASTFPMIEAIDYHTTHTISSIRITPLPAGHVLGAAMFLISISGLTILFTGDYSIEPD 201
Query: 198 RHLRAAELP-QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A +P D+ I ESTYGV H PR RE+ I +++GGRVL+P FALG
Sbjct: 202 RHLISASVPANVKVDVLITESTYGVASHVPRLEREQALMKSITGILNRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS H + NIPIYYAS LA+KCM VYQTY+ +MNE I+ F
Sbjct: 262 RAQELLLILDEYWSRHKDLQNIPIYYASNLARKCMLVYQTYVGAMNENIKRLFRERMAES 321
Query: 310 ----ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
N P+ FK+I L S++ F DVG V++ASPG +Q+G+SR+L + W KN V
Sbjct: 322 EAGGTNGGPWDFKYIRSLKSLERFDDVGSCVMLASPGMMQNGVSRELLERWAPSDKNGVV 381
Query: 366 IPGYVVEGTLAKTIISEPKEVTLM---NG--------------LTAPLNMQVHYISFSAH 408
I GY VEGT+AK+I+ EP ++ + NG + P V SF+AH
Sbjct: 382 ITGYSVEGTMAKSIMQEPDQIQAIMSRNGANRRAGRGGEDGEKVMVPRRCSVQEFSFAAH 441
Query: 409 ADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC----NTKIITPKNCQSVE 464
D + F++++ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ V
Sbjct: 442 VDGVENREFIEKVAAPVVILVHGEQHNMMRLKSKLLSLNANLPESKKVKVYSPRNCEEVR 501
Query: 465 MYFNSEKMAKTIGRLAEKTP---------------EVGETVSGILVKKGFTYQIMAPDDL 509
+ F ++K+AK +G+LA +P + G+ +SG+LV+ F +MAP+DL
Sbjct: 502 IPFKADKIAKVVGKLANLSPPTLLTSGEGGELQFDDGGKIISGVLVENDFKLSLMAPEDL 561
Query: 510 HIFSQLSTANI--TQRI 524
++ L+T + QRI
Sbjct: 562 REYAGLTTTVVMCKQRI 578
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/591 (42%), Positives = 351/591 (59%), Gaps = 80/591 (13%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D
Sbjct: 16 DEPVD-PSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDL 74
Query: 74 SAIDVLLITH-------------------------------------FHLDHAASLPYFL 96
S +DVLLI+H FH+DHAASLPY L
Sbjct: 75 STVDVLLISHEGKRACSIYLHSDARHVCAPKQCLFICLSPLLTRGDSFHIDHAASLPYVL 134
Query: 97 EKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--MLFDEQDINRSMDKIEVLDFHQ 154
KT F+GRVFMTH TKAIYK L+ D V+V + L+ EQD + +IE +D+H
Sbjct: 135 AKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTASNSATQLYTEQDHLNTFPQIEAIDYHT 194
Query: 155 TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDIC 213
T ++ I+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DRHL +AE+P+ D+
Sbjct: 195 THTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGIKIDVL 254
Query: 214 IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP 273
I ESTYG+ H PR RE+ I +++GGR L+P FALGRAQELLLILDEYW+ HP
Sbjct: 255 ITESTYGIASHVPRLEREQALMKSITGILNRGGRALLPVFALGRAQELLLILDEYWAKHP 314
Query: 274 EFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--------------ANSNPFKFKH 319
E+ PIYYAS LA+KCM +YQTY+ +MN+ I+ F + P+ FK+
Sbjct: 315 EYQKFPIYYASNLARKCMVIYQTYVGAMNDNIKRLFRERMAEAEASGDSAGKNGPWDFKY 374
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
I L ++D F DVG V++ASPG LQ+G+SR+LF+ W +KN +I GY VEGT+A+ I
Sbjct: 375 IRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELFERWAPSEKNGVIITGYSVEGTMARQI 434
Query: 380 ISEPKEVTLM----------------NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
+ EP ++ + + P V SF+AH D + F++E+
Sbjct: 435 MQEPDQIQAVMSRSIAGARRGPGSDSEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAA 494
Query: 424 PNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
P +ILVHGE H M RLK+KL++ A K+ +P+NC+ + + F ++K AK +G+LA
Sbjct: 495 PVVILVHGEQHNMMRLKSKLLSLNASKTLKVKVYSPRNCEELRIPFKADKTAKVVGKLAS 554
Query: 482 -----KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
++G+LV+ F +MAP+DL ++ L+T IT QR+T
Sbjct: 555 IPPPKDPDAPAPLITGVLVQNDFKLSLMAPEDLREYAGLNTTTITCKQRLT 605
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 251/582 (43%), Positives = 351/582 (60%), Gaps = 59/582 (10%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA+ + S+ D D+L+ LG GNEVGRSC + YKGKT++ D G+HPA+
Sbjct: 1 MAAKRKAASMAPEDDDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHE 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
G++A+P++D+ D S +DVLLI+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+
Sbjct: 61 GLSAMPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQ 120
Query: 121 DYVKVSKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM 176
D V+V +S ++ E D + IE +DF+ T V+G++ Y AGHVLGAAM
Sbjct: 121 DSVRVGNMSSNSETKIQMYTEADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAM 180
Query: 177 FMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFT 235
F+++IAG+++L+TGDYSRE+DRHL +A +P D+ I EST+G+ +H PR RE +
Sbjct: 181 FLMEIAGLKILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLM 240
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
I +++GGR L+P FALGRAQELLLILDEYWS HPE IPIYY S LA+KCM VYQ
Sbjct: 241 KAITDVLNRGGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQ 300
Query: 296 TYILSMNERIRNQF-------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPG 342
TY+ +MN+ I+ F + FK + L S++ F D+G V++ASPG
Sbjct: 301 TYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPG 360
Query: 343 GLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------- 394
+QSG SR+L + W D +N +I GY VEGT+AK I+ EP ++ + +
Sbjct: 361 MMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQ 420
Query: 395 --------PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTE 446
P V SF+AH D + F++E+ P +ILVHGE M RLK+KL++
Sbjct: 421 RENEQTMIPRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSF 480
Query: 447 LAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET--------------- 489
A TKI +P NC+ + + F ++K+AK +G+LA TP V +
Sbjct: 481 NAQKAIPTKIYSPANCEELRIPFKTDKIAKVVGKLASITPPVPRSLTPGGSEVNQKGGKE 540
Query: 490 --------VSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+SG+L++ F +MAP+DL ++ L+T I R
Sbjct: 541 EESEKVDLISGVLIQNDFKISLMAPEDLKEYAGLTTTTILCR 582
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 235/493 (47%), Positives = 332/493 (67%), Gaps = 39/493 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ P+FDE D S +D+LLI+HFH+DH
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPFFDEYDLSKVDILLISHFHVDH 77
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE----------------- 131
+ASLPY ++++ FKG+VFMTHATKAIY+ L+ D+V+V+ +
Sbjct: 78 SASLPYVMQQSNFKGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEGGGTSATGASGSLN 137
Query: 132 ---DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
L+ + DI +S D+IE +D+H T+E++GIKF Y AGHVLGA M+ ++I G++VL+
Sbjct: 138 EEGGNLYTDDDIFKSFDRIETIDYHSTMEIDGIKFTAYHAGHVLGACMYFIEIGGLKVLF 197
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREE+RHL+AAE+P PDI I EST+G + + EK+ T IH+TI++GGRV
Sbjct: 198 TGDYSREENRHLQAAEVPPTRPDILITESTFGTGTLESKAELEKKLTSHIHATITRGGRV 257
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR-- 306
L+P FALG AQE+LLIL+EYW + + HN+ +YY S LA+KCMAVY+TY MN++IR
Sbjct: 258 LLPVFALGNAQEILLILEEYWEKNEDLHNVNVYYCSDLARKCMAVYETYTGIMNDKIRLS 317
Query: 307 ----------NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIW 356
N SNPF FK+I + ++ FSD+GPSVV+A+PG LQ+G+SRQL + W
Sbjct: 318 SSSSSSTSSSNNSTKSNPFDFKYIKSIKNLSKFSDLGPSVVVATPGMLQAGVSRQLLEKW 377
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQT 414
++KN ++ GY VEGT+AK I+ EP+ + N L+ P + V ISF+AH D+ Q
Sbjct: 378 APEQKNLVILTGYSVEGTMAKDIMKEPQVIPSFNNPDLSIPRRIGVEEISFAAHVDFQQN 437
Query: 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNS 469
S F+ ++ P IILVHG+S MGRLK+ L+++ + D K+ P+NC+ + + F
Sbjct: 438 SDFIDKVSPSKIILVHGDSIPMGRLKSALLSKYSSRKGTDKEVKVFNPRNCEELCIEFKG 497
Query: 470 EKMAKTIGRLAEK 482
++AK +G LAE+
Sbjct: 498 LRIAKVLGSLAEE 510
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 254/577 (44%), Positives = 348/577 (60%), Gaps = 73/577 (12%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 TH--------------------------FHLDHAASLPYFLEKTTFKGRVFMTHATKAIY 115
+ FH+DHAASLPY L KT F+GRVFMTH TKAIY
Sbjct: 83 SQTASYCVVLSRPVSCSRDDDIHDFAFFFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIY 142
Query: 116 KLLLTDYVKVSKVS---VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVL 172
K L+ D V+V S ++ EQD + +IE +D+H T ++ I+ Y AGHVL
Sbjct: 143 KWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVL 202
Query: 173 GAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIRE 231
GAAMF+++IAG+ + +TGDYSRE+DRHL +AE+P+ D+ I ESTYG+ H PR RE
Sbjct: 203 GAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVPRLERE 262
Query: 232 KRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCM 291
+ I S +++GGRVL+P FALGRAQELLLILDEYW H +F PIYYAS LA+KCM
Sbjct: 263 QALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNLARKCM 322
Query: 292 AVYQTYILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSDVGPSVV 337
+YQTY+ +MN+ I+ F P+ FK+I L ++D F DVG V+
Sbjct: 323 LIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVM 382
Query: 338 MASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTL-----MNG- 391
+ASPG LQ+G+SR+L + W +KN +I GY VEGT+AK I+ EP ++ M G
Sbjct: 383 LASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGA 442
Query: 392 ----------LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+ P V SF+AH D + F++E+ P +ILVHGE H M RLK+
Sbjct: 443 RRMPGGDGEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVAAPVVILVHGEQHNMMRLKS 502
Query: 442 KLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP---------EVGETV 490
KL++ A+ K+ +P+NC+ + + F ++K AK +G+LA P V
Sbjct: 503 KLLSLNANKTAKVKVYSPRNCEELRIPFKADKTAKVVGKLASIQPPQSIHPDQSAAPPLV 562
Query: 491 SGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
+G+LV+ F +MAP+DL ++ L+T IT QR+T
Sbjct: 563 TGVLVQNDFKLSLMAPEDLREYAGLNTTTITCKQRLT 599
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/582 (43%), Positives = 350/582 (60%), Gaps = 78/582 (13%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 TH-------------------------------FHLDHAASLPYFLEKTTFKGRVFMTHA 110
+H FH+DHAASLPY L KT F+GRVFMTH
Sbjct: 83 SHPVQDTTALYCHGQYCACVMSISMIMLLIGHSFHIDHAASLPYVLAKTNFRGRVFMTHP 142
Query: 111 TKAIYKLLLTDYVKVSKVS---VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT 167
TKAIYK L+ D V+V S ++ EQD + +IE +D+H T ++ I+ Y
Sbjct: 143 TKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDYHTTHTISSIRITPYP 202
Query: 168 AGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQP 226
AGHVLGAAMF+++IAG+ + +TGDYSRE+DRHL +AE+P+ D+ I ESTYG+ H P
Sbjct: 203 AGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIASHVP 262
Query: 227 RNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPL 286
R RE+ I S +++GGRVL+P FALGRAQELLLILDEYW H +F PIYYAS L
Sbjct: 263 RLEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHADFQKYPIYYASNL 322
Query: 287 AKKCMAVYQTYILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSDV 332
A+KCM +YQTY+ +MN+ I+ F P+ FK+I L ++D F DV
Sbjct: 323 ARKCMLIYQTYVGAMNDNIKRLFRERMAEAEASGDGAGKGGPWDFKYIRSLKNLDRFDDV 382
Query: 333 GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTL---- 388
G V++ASPG LQ+G+SR+L + W +KN +I GY VEGT+AK I+ EP ++
Sbjct: 383 GGCVMLASPGMLQNGVSRELLERWAPSEKNGVIITGYSVEGTMAKQIMQEPDQIQAVMSR 442
Query: 389 -MNG-----------LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
M G + P V SF+AH D + F++E+ P +ILVHGE H M
Sbjct: 443 SMAGARRMPGGDGEKVLIPRRCSVQEYSFAAHVDGVENREFIEEVQAPVVILVHGEQHNM 502
Query: 437 GRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP---------E 485
RLK+KL++ A+ K+ +P+NC+ + + F ++K+AK +G+LA P
Sbjct: 503 MRLKSKLLSLNANKTAKVKVYSPRNCEELRIPFKADKIAKVVGKLACIQPPQSIHPDQTA 562
Query: 486 VGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
V+G+LV+ F +MAP+DL ++ L+T IT QR+T
Sbjct: 563 TPPLVTGVLVQNDFKLSLMAPEDLREYAGLNTTTITCKQRLT 604
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/562 (44%), Positives = 346/562 (61%), Gaps = 60/562 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA+ G++A+P++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V +S ++ E
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + IE +DF+ T V+G++ Y AGHVLGAAMF+++IAG+++L+TGDYSRE+D
Sbjct: 142 ADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSREDD 201
Query: 198 RHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A + P D+ I EST+G+ +H PR RE + I +++GGR L+P FALG
Sbjct: 202 RHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNRGGRALLPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE IPIYY S LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 262 RAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRLFAERMAEA 321
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ FK + L S++ F D+G V++ASPG +QSG SR+L + W D +N
Sbjct: 322 EAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPGMMQSGTSRELLERWAPDPRNG 381
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTA----------------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ + + P V SF+A
Sbjct: 382 VIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQRENEQTMIPRRCTVQEYSFAA 441
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCN--TKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE M RLK+KL++ A TKI +P NC+ + +
Sbjct: 442 HVDGKENMEFVQEVGAPVVILVHGEKGNMTRLKSKLLSFNAQKTIPTKIYSPANCEELRI 501
Query: 466 YFNSEKMAKTIGRLAEKTP--------------EVG----------ETVSGILVKKGFTY 501
F ++K+AK +G+LA TP +VG + +SG+L++ F
Sbjct: 502 PFKTDKIAKVVGKLASITPPMPRSLTLDGSEANQVGVKQEPEGENVDIISGVLIQNDFKI 561
Query: 502 QIMAPDDLHIFSQLSTANITQR 523
+MAP+DL ++ L+T I R
Sbjct: 562 SLMAPEDLKEYAGLTTTTILCR 583
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 250/582 (42%), Positives = 349/582 (59%), Gaps = 59/582 (10%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MA+ + S+ D D+L+ LG GNEVGRSC + YKGKT++ D G+HPA+
Sbjct: 1 MAAKRKAASMAPEDDDPIDPSDELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHE 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
G++A+P++D+ D S +DVLLI+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+
Sbjct: 61 GLSAMPFYDDFDLSTVDVLLISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQ 120
Query: 121 DYVKVSKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM 176
D V+V +S ++ E D + IE +DF+ T V G++ Y AGHVLGAAM
Sbjct: 121 DSVRVGNMSSNSETKIQMYTEADHLNTYPMIESIDFYTTHTVAGVRITPYPAGHVLGAAM 180
Query: 177 FMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFT 235
F+++IAG+++L+TGDYSRE+DRHL +A +P D+ I EST+G+ +H PR RE +
Sbjct: 181 FLMEIAGLKILFTGDYSREDDRHLVSASVPAGVKVDVLITESTFGISMHTPRVEREAQLM 240
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
I +++GGR L+P FALGRAQELLLILDEYWS HPE IPIYY S LA+KCM VYQ
Sbjct: 241 KAITDVLNRGGRALLPVFALGRAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQ 300
Query: 296 TYILSMNERIRNQF-------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPG 342
TY+ +MN+ I+ F + FK + L S++ F D+G V++ASPG
Sbjct: 301 TYVSAMNDNIKRLFAERMAEAEAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPG 360
Query: 343 GLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------- 394
+QSG SR+L + W D +N +I GY VEGT+AK I+ EP ++ + +
Sbjct: 361 MMQSGTSRELLERWAPDPRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRASNTARRPGQ 420
Query: 395 --------PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTE 446
P V SF+AH D + F++E+ P +ILVHGE M RLK+KL++
Sbjct: 421 RENEQTMIPRRCTVQEYSFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSF 480
Query: 447 LAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP-------------------- 484
A TKI +P NC+ + + F ++K+AK +G+LA P
Sbjct: 481 NAQKAIPTKIYSPANCEELRIPFKTDKIAKVVGKLASIAPPLPRSLTPGGSEIDQKGGKG 540
Query: 485 ---EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
E + +SG+L++ F +MAP+DL ++ L+T I R
Sbjct: 541 DESERVDLISGVLIQNDFKISLMAPEDLKEYAGLTTTTILCR 582
>gi|164658265|ref|XP_001730258.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
gi|159104153|gb|EDP43044.1| hypothetical protein MGL_2640 [Malassezia globosa CBS 7966]
Length = 741
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 226/435 (51%), Positives = 307/435 (70%), Gaps = 7/435 (1%)
Query: 96 LEKTTF---KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDF 152
+EKT F KG+V+MTH TKAIY+ L++D+V++S + MLFDE ++ S +IE +D+
Sbjct: 1 MEKTNFCEGKGKVYMTHPTKAIYRFLMSDFVRISNAGSDRMLFDEAEMLASWRQIEAVDY 60
Query: 153 HQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPD 211
HQ V + G ++F Y AGHVLGA MFM+D+AG+RVLYTGDYSREEDRHL AE+P PD
Sbjct: 61 HQEVVLGGGLRFTPYHAGHVLGACMFMIDMAGLRVLYTGDYSREEDRHLVQAEVPPMRPD 120
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I ESTYG Q +PR +E RFT +IHS I +GGRVL+P F LGRAQELLL+LDEYW
Sbjct: 121 VLICESTYGTQSLEPRLDKEMRFTSLIHSIIRRGGRVLLPVFVLGRAQELLLLLDEYWEA 180
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLNSIDDFS 330
HPE H++PIYYAS LA+KCM++YQTYI +MN+ IR +F NPF FKH+S L S+D F
Sbjct: 181 HPELHSVPIYYASSLARKCMSIYQTYIHTMNQHIRARFHRRDNPFVFKHVSNLRSLDKFD 240
Query: 331 DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMN 390
D GP V+MASPG +QSG+SR+L + W DK+N ++ GY VEGT+A+ I+S+P ++ +N
Sbjct: 241 DKGPCVMMASPGFMQSGISRELLERWAPDKRNGVIVSGYSVEGTMARDILSDPDDIVALN 300
Query: 391 GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC 450
G P M V YISFSAH DY Q S F+ ++ +++LVHGE M L+ L + +D
Sbjct: 301 GQRIPRRMSVDYISFSAHVDYTQNSRFIDQVKAKHVVLVHGELKNMSGLRAALQSRYSDR 360
Query: 451 NTK--IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDD 508
+ I P+NC+ + + F +++ AK IG LA P+ +T+ G+LV K F+Y ++AP+D
Sbjct: 361 EEEIHIYMPRNCEPLTLSFRADRTAKVIGSLAAHAPKPSDTIDGLLVAKDFSYTVLAPED 420
Query: 509 LHIFSQLSTANITQR 523
L F+ L T+ I QR
Sbjct: 421 LTEFTGLGTSTIVQR 435
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/562 (44%), Positives = 345/562 (61%), Gaps = 60/562 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA+ G++A+P++D+ D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYDDFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V +S ++ E
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + IE +DF+ T V+G++ Y AGHVLGAAMF+++IAG+++L+TGDYSRE+D
Sbjct: 142 ADHLNTYPMIESIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSREDD 201
Query: 198 RHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A + P D+ I EST+G+ +H PR RE + I +++GGR L+P FALG
Sbjct: 202 RHLVSASVPPGVKIDVLITESTFGISMHTPRVEREAQLMKAITDVLNRGGRALLPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE IPIYY S LA+KCM VYQTY+ +MN+ I+ F
Sbjct: 262 RAQELLLILDEYWSKHPEVQKIPIYYNSSLARKCMQVYQTYVSAMNDNIKRLFAERMAEA 321
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ FK + L S++ F D+G V++ASPG +QSG SR+L + W D +N
Sbjct: 322 EAAGDTGRRGAWDFKFVRSLKSLERFDDLGGCVMLASPGMMQSGTSRELLERWAPDPRNG 381
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTA----------------PLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ + + P V SF+A
Sbjct: 382 VIITGYSVEGTMAKHIVHEPDQIPAIMTRASNTARRPGQRENEQTMIPRRCTVQEYSFAA 441
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCN--TKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE M RLK+KL++ A TKI +P NC+ + +
Sbjct: 442 HVDGKENMEFVQEVGAPVVILVHGEKGNMTRLKSKLLSFNAQKTIPTKIYSPANCEELRI 501
Query: 466 YFNSEKMAKTIGRLAEKTPEV---------------------GET---VSGILVKKGFTY 501
F ++K+AK +G+LA TP + GE +SG+L++ F
Sbjct: 502 PFKTDKIAKVVGKLASITPPMPRSLTPGGSESDQAGAKQESEGENIDIISGVLIQNDFKI 561
Query: 502 QIMAPDDLHIFSQLSTANITQR 523
+MAP+DL ++ L+T I R
Sbjct: 562 SLMAPEDLKEYAGLTTTTILCR 583
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/521 (46%), Positives = 337/521 (64%), Gaps = 46/521 (8%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHA 110
D G+HPA G AALP+FD+ D S++D+LLI+HFHLDH+A LPY L KT FKGRVFMTHA
Sbjct: 56 LDAGMHPAKEGFAALPFFDDFDLSSVDILLISHFHLDHSAGLPYVLSKTNFKGRVFMTHA 115
Query: 111 TKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY 166
TKAIYK L+ D V+VS S L+ E++ ++ +IE +DF+ T +N I+ +
Sbjct: 116 TKAIYKWLIQDNVRVSNTSSSSDQRTTLYTEEEHLSTLPQIEAIDFNTTHTINSIRITPF 175
Query: 167 TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQ 225
AGHVLGAAMF++ IAG+ +L+TGDYSREEDRHL +AE+P+ D+ I EST+G+ +
Sbjct: 176 PAGHVLGAAMFVISIAGLNILFTGDYSREEDRHLISAEVPKGIKIDVLITESTFGISSNP 235
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
PR RE I + +++GGRVL+P FALGRAQELLLILDEYWS HPE IPIYY
Sbjct: 236 PRLEREAALMKSITTILNRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGN 295
Query: 286 LAKKCMAVYQTYILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSD 331
+A+KC+ VYQTYI +MNE I+ F A + P+ F+++ + +I+ F D
Sbjct: 296 MARKCIIVYQTYIGAMNENIKRVFRERMAEADAAGANSATAGPWNFRYVRSVKNIERFDD 355
Query: 332 VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMN 390
VG V++ASPG LQ+G SR+L + W +++N ++ GY VEGT+ K I++EP+++ +M+
Sbjct: 356 VGGCVMLASPGMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQILNEPEQIPAVMS 415
Query: 391 GLTA------------------PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
G A P V ISF+AH D + F++E+ P +ILVHGE
Sbjct: 416 GKNAVGPARRMTGGDEEQKVMIPRRCTVDEISFAAHVDGVENREFIEEVGAPVVILVHGE 475
Query: 433 SHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETV 490
H+M RLK+KL++ AD K+ TP NC+ V + F +K+AK +GRLAE+ P E+
Sbjct: 476 KHQMMRLKSKLLSLNADKKIKVKVFTPANCEEVRIPFQVDKVAKVVGRLAERPPPADESE 535
Query: 491 S----GILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
S G+LV+ GF +MAP+DL ++ L+T IT Q IT
Sbjct: 536 SRLMNGVLVQNGFKLSLMAPEDLREYAGLATTTITCKQHIT 576
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 247/555 (44%), Positives = 331/555 (59%), Gaps = 56/555 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D GIHP+Y G+ ALP++DE D S +D+LLI
Sbjct: 24 DELMFLALGGGNEVGRSCHIIQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------SKVSVED-- 132
THFH DH+ASLPY L KT F GRV+MTH TKAIYK D V+V S S D
Sbjct: 84 THFHQDHSASLPYVLSKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPASSSSGTDGY 143
Query: 133 --MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ EQDI +M I+ + FH T NGI+F Y AGHVLGA M++++IAG+ +L+TG
Sbjct: 144 VSQLYTEQDILSTMPMIQTISFHTTHSHNGIRFTPYPAGHVLGACMYLIEIAGLNILFTG 203
Query: 191 DYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DYSRE DRHL A +P+ D I EST+G+ PR RE I + +++GGRVL
Sbjct: 204 DYSRETDRHLIPATVPRNVKVDCLITESTFGISTRTPRQERENALIKSITTILNRGGRVL 263
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P A+G QELLLIL++YW H E+ PIYYAS LA+K M VYQTY+ MN+ I+ +F
Sbjct: 264 MPTTAVGNTQELLLILEDYWQRHEEYRKFPIYYASGLARKVMVVYQTYVDDMNDTIKAKF 323
Query: 310 ------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+ P+ F+ + L ID F DVG SVV+ASPG LQ+G SR L + W
Sbjct: 324 QASAVGQSVGEGGTAGPWDFQFVRALKGIDRFEDVGGSVVLASPGMLQNGPSRALLERWA 383
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLM--------------NGLTAPLNM----- 398
+ KN VI GY VEGT+AKTI+ EP E+ + G+ M
Sbjct: 384 PEAKNGVVITGYSVEGTMAKTILMEPDEIPAVTQNRSANIPSMGKRGGVEGEKQMIKRRC 443
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPK 458
V +F+ H D + F++E+ P +ILVHGE H M RLK++L L K+ +P
Sbjct: 444 TVQEFNFAVHVDGQENREFIEEVGAPVVILVHGEKHNMNRLKSRL---LGIGRMKVYSPA 500
Query: 459 NCQSVEMYFNSEKMAKTIGRLAEKT----------PEVGETVSGILVKKGFTYQIMAPDD 508
NC+ V + F EK+A+ +GRLA + +G+ VSG+LV+ F +MAP+D
Sbjct: 501 NCEEVRIPFRQEKVARVVGRLASQIQPPTLLPKHDSSLGQLVSGVLVQNDFKLSLMAPED 560
Query: 509 LHIFSQLSTANITQR 523
L ++ L+T + R
Sbjct: 561 LKEYAGLATTTLVCR 575
>gi|209876680|ref|XP_002139782.1| cleavage and polyadenylation specificity factor subunit 3
[Cryptosporidium muris RN66]
gi|209555388|gb|EEA05433.1| cleavage and polyadenylation specificity factor subunit 3, putative
[Cryptosporidium muris RN66]
Length = 767
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 227/479 (47%), Positives = 316/479 (65%), Gaps = 22/479 (4%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ L I LGAG EVGRSCV +++KG++++FDCGIHPA+SG+ +LP FD +D S+ID+ L+
Sbjct: 22 ETLFIQALGAGCEVGRSCVVVTFKGRSVMFDCGIHPAFSGIGSLPVFDAVDISSIDLCLV 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--------- 132
THFHLDH+ ++PYF+ T F GR+FMT TKAI KL+ DY ++++ S
Sbjct: 82 THFHLDHSGAIPYFVSSTDFNGRIFMTEPTKAICKLVWQDYARMNRFSTNSPVPVDSDEA 141
Query: 133 -----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
L+ E DI ++M +IE++DF Q E++G++ CY AGHVLGA MF+V+I GVR+L
Sbjct: 142 PVSCVNLYTEPDIEKAMKRIEIIDFRQQAEIDGVRISCYGAGHVLGACMFLVEIGGVRIL 201
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGDYSRE+DRH+ AE+P + I ESTYG +LH+PR REKRF + S +S+ G+
Sbjct: 202 YTGDYSREDDRHVPRAEIPPVDVHVLICESTYGTRLHEPRKDREKRFLGCVQSILSRQGK 261
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
L+P FA+GRAQELLLILDE+W+ HNIPIYYASP++ KCM V++TYI + +R
Sbjct: 262 CLLPVFAIGRAQELLLILDEHWAQTSCLHNIPIYYASPMSVKCMRVFETYINQCGDAVRK 321
Query: 308 QF-ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
Q NPF F+ + +NSI + D GP V+MA+PG LQ+G SR +F++W DK+N
Sbjct: 322 QADMGINPFNFQFVKTVNSISEIKDAIYSEGPCVIMAAPGMLQNGTSRDIFEVWAPDKRN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM 422
++ GY + GT A + EP + L + L PL + ISFSAH+D+AQT F+ L
Sbjct: 382 GVILTGYAIRGTPAYELRREPDIIQLGDKL-VPLKAKFDQISFSAHSDFAQTQEFISNLK 440
Query: 423 PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
PN+ILVHGE E RL+ KL TEL + + P+ Q V + F + +G +A+
Sbjct: 441 VPNVILVHGERGECKRLRDKL-TELRP-SLAVFAPEILQKVSLTFPIQLNITAVGSIAD 497
>gi|299116292|emb|CBN76100.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 752
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/433 (53%), Positives = 290/433 (66%), Gaps = 29/433 (6%)
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAA 175
++LL+DY+++ V E +L+DE+D+NR +DKIE++DFHQ +E GIKFWCY AGHVLGAA
Sbjct: 2 RMLLSDYIRLVNVHTEHILYDEKDLNRCIDKIELVDFHQVLEHEGIKFWCYNAGHVLGAA 61
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFT 235
MFM++IAGV VLYTGDYS E DRHL AAE+P SPD+ I+ESTYGVQ+H+PR RE RF
Sbjct: 62 MFMIEIAGVHVLYTGDYSMEADRHLMAAEMPSTSPDVLIVESTYGVQVHEPRKERESRFV 121
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
+ + +GGR LIP FALGRAQELLLILDEYW H E H+IPIYYAS LA K
Sbjct: 122 GTVSKAVKKGGRCLIPVFALGRAQELLLILDEYWQQHRELHHIPIYYASRLASK------ 175
Query: 296 TYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
TYI MNE IR Q +NPFKF+HI+ L SID F D GPSVVMASPG LQSG+SR LFD
Sbjct: 176 TYINMMNEHIRQQMDVANPFKFQHITNLKSIDQFDDSGPSVVMASPGMLQSGVSRMLFDR 235
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
WC+D KN+ +IPGY VEGTLAK ++S P EV M+G +V YISFSAH D+ Q
Sbjct: 236 WCTDDKNSVLIPGYSVEGTLAKKLLSMPDEVQGMDGRVRQRRCEVEYISFSAHVDFVQNK 295
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELA----DCNTKIITPKNCQSVEMYFNSEK 471
F++ + P N+ILVHGE M RLKT+L + A D + PKNC V++ F+ E
Sbjct: 296 GFIEGVQPANVILVHGEETGMLRLKTELEKQFAMVPQDERPLVFNPKNCAEVKIEFHRET 355
Query: 472 MAKTIGRLAEKTPEVGE-------------------TVSGILVKKGFTYQIMAPDDLHIF 512
+AK +G LA G+ V G+LV + FT ++M+ D+L +
Sbjct: 356 VAKAVGSLARDLGGRGKGSKGVSRRAAAARRRGEAFDVQGLLVNERFTKRLMSADELDEY 415
Query: 513 SQLSTANITQRIT 525
+ L I QR++
Sbjct: 416 TLLKVGGIRQRLS 428
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/507 (45%), Positives = 318/507 (62%), Gaps = 15/507 (2%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L + PLGAG EVGRSC+ + Y K ++ DCGIHPAY LP+ D IDP+ IDVLLI
Sbjct: 9 DKLTVMPLGAGQEVGRSCIILKYHRKRVMLDCGIHPAYENFGGLPFIDAIDPAKIDVLLI 68
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDI 140
THFH+DH ++P+FL +T F G FMTH TK I K LL DYV VS + S E LF D+
Sbjct: 69 THFHIDHITAVPWFLTQTNFSGPCFMTHTTKTISKTLLVDYVGVSGRGSEEPNLFTRADV 128
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
+ I +++HQTV GIK CY AGHVLGA M++V+I GV+VLYTGD+S E +RHL
Sbjct: 129 ANVQNMITAVNYHQTVTHQGIKMTCYPAGHVLGACMWLVEIDGVKVLYTGDFSLENERHL 188
Query: 201 RAAELPQ------FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
+ AE+P+ PD+ I+EST+G+ + R RE RF D + I +GGR LIP FA
Sbjct: 189 QGAEIPKSLSGEIIRPDVLIMESTHGLARIESRVDREYRFIDNVTKIIKRGGRCLIPIFA 248
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQELL+ILDEYW +HPE++ +PIYY S LAK+ +A Y + N R+
Sbjct: 249 LGRAQELLIILDEYWESHPEYNGVPIYYGSNLAKQAIAAYNAFYQDHNSRV---VTAKGK 305
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F+F ++ + DF D P VV+ SP LQ+G+SR++F+ WCS+ N +IPGY+V+GT
Sbjct: 306 FEFSYVKYIRDY-DFDDSLPCVVLCSPAMLQNGMSRKIFEAWCSNSVNGLIIPGYIVDGT 364
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
L + ++ P E+T ++G P + + Y+SFS HAD+ QTS F+ EL P I+L+HG
Sbjct: 365 LPQVLMKNPAEITTLSGKIIPRKISIDYVSFSGHADFNQTSRFITELKPKRIVLIHGVCG 424
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
M +LK KL+ + ++ TP C+ M+F S A G L++ + +SGI+
Sbjct: 425 LMMQLKEKLLQMFVEDGLEVYTPGLCEKATMWFQSNPSAIITGGLSDNK----DNISGII 480
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANIT 521
V+K IM+ +L + L T N T
Sbjct: 481 VRKDGQNMIMSASELSTHTTLKTLNAT 507
>gi|378730429|gb|EHY56888.1| endoribonuclease ysh1 [Exophiala dermatitidis NIH/UT8656]
Length = 868
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/559 (43%), Positives = 342/559 (61%), Gaps = 57/559 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG EVGRSC + YKGKT++ D G+H GM+A+PYFD+ D S +D+LLI
Sbjct: 23 DELVFIGLGGCQEVGRSCHILQYKGKTVMLDAGMHTGREGMSAMPYFDDFDLSTVDILLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV----EDMLFDE 137
+HFHLDHAA+LPY L KT FKGRVFMTH TKAIYK L+ D V+VS S L+ E
Sbjct: 83 SHFHLDHAAALPYVLAKTDFKGRVFMTHPTKAIYKWLIQDSVRVSNTSSTSDQRTSLYTE 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D ++ +IE +DF+ T V+G++ Y AGHVLGAAMF+++IAG+ + +T DYSRE+D
Sbjct: 143 ADHISTLPQIETIDFYTTHTVSGVRITPYPAGHVLGAAMFLINIAGLNIWFTADYSREQD 202
Query: 198 RHLRAAELPQFSP----DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
RHL AAE+P S D+ I EST+G+ PR RE + + +++GG+VL+P F
Sbjct: 203 RHLVAAEVPNKSTVGKIDLLITESTFGISNAPPRAEREAGLLKAVTNILNRGGKVLMPVF 262
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF---- 309
ALGRAQELLLIL++YWS HPE PIYY A+KCM VYQTYI +MN+ I+ F
Sbjct: 263 ALGRAQELLLILEDYWSKHPELQKYPIYYTGNTARKCMVVYQTYINAMNDNIKRIFRERM 322
Query: 310 -----------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCS 358
++ P+ F+ + L ++D F DVG V++ASPG LQSG+SR L + W
Sbjct: 323 AEAEAAGNAKGVSAGPWDFRFVRSLRNLDRFDDVGGCVMLASPGMLQSGMSRVLLERWAP 382
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNG-------------------LTAPLNM 398
D +N ++ GY VEGT+A+TI+SEP+ + +M+G + P
Sbjct: 383 DPRNGVIMTGYNVEGTMARTILSEPEMIPAIMSGGNTGVGQQMGRKGRDDEGAVMIPRRC 442
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM----TELADC---- 450
V F+AH + F++++ P++ILVHGE + RL+++L+ LA
Sbjct: 443 TVEEFQFAAHVTGVENVDFIEQVASPHVILVHGERSQAARLRSRLLDLNSRRLASNPHAH 502
Query: 451 NTKIITPKNCQSVEMYFNSEKMAKTIGRLAE------KTPEVGETVSGILVKKGFTYQIM 504
TK+ +P+N +++ + +KMAK +G+LA+ PE VSG+LV+ GF +M
Sbjct: 503 QTKVYSPENGAEIKIPYQKDKMAKVVGKLAQIPPPASTDPEDTRVVSGVLVQNGFKLSLM 562
Query: 505 APDDLHIFSQLSTANITQR 523
AP+DL ++ L+T I R
Sbjct: 563 APEDLREYAGLTTTTILCR 581
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 247/563 (43%), Positives = 344/563 (61%), Gaps = 60/563 (10%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHF-----------HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122
S +D+LLI+ + + D A + + +K RVFMTHATKAIYK L+ D
Sbjct: 75 STVDILLISQYVELFILFYHVLNFDLGADILDWRDKR----RVFMTHATKAIYKWLIQDN 130
Query: 123 VKVSKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
V+VS S L+ EQD ++ +IE +DF+ T +N I+ + AGHVLGAAMF+
Sbjct: 131 VRVSNTSSSSDQRTTLYTEQDHLSTLSQIEAIDFNTTHTINSIRITPFPAGHVLGAAMFL 190
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+ IAG+ +L+TGDYSREEDRHL +AE P+ D+ I EST+GV + PR RE
Sbjct: 191 ISIAGLNILFTGDYSREEDRHLISAEAPKGIKIDVLITESTFGVSSNPPRLEREAALMKS 250
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
I +++GGRVL+P FALGRAQELLLILDEYWS HPE IPIYY +A++CM VYQTY
Sbjct: 251 ITGVLNRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKIPIYYIGNIARRCMVVYQTY 310
Query: 298 ILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGG 343
I +MNE I+ F ++ P+ F+ + + SI+ F DVG V++ASPG
Sbjct: 311 IGAMNENIKRLFRQRMAEAEASGDKSVSAGPWDFRFVRSVRSIERFDDVGGCVMLASPGM 370
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA-------- 394
LQ+G SR+L + W ++N ++ GY VEGT+ K I++EP+++ +M+G A
Sbjct: 371 LQTGTSRELLERWAPSERNGVIMTGYSVEGTMGKQILNEPEQIPAVMSGRNAVGPARRMA 430
Query: 395 ----------PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM 444
P V ISF+AH D + F++E+ P +ILVHGE ++M RLK+KL+
Sbjct: 431 AGDDEQKVMIPRRCTVDEISFAAHVDGMENREFIEEVAAPVVILVHGEKNQMMRLKSKLL 490
Query: 445 TELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKG 498
+ AD K+ TP NC+ V + F +K+AK +GRLAE +P ++G+LV+ G
Sbjct: 491 SLNADKTVKVKVYTPANCEEVRIPFQVDKVAKVVGRLAESSPPSDHNESRIMNGVLVQNG 550
Query: 499 FTYQIMAPDDLHIFSQLSTANIT 521
F +MAP+DL ++ L+T IT
Sbjct: 551 FKLSLMAPEDLREYAGLATTTIT 573
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/582 (42%), Positives = 337/582 (57%), Gaps = 74/582 (12%)
Query: 13 RDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
+D PV D+ + LG GNEVGRSC + YKGKT++ D GIHP+Y G+ ALP++DE D
Sbjct: 17 QDEPVD-PSDEFMFLALGGGNEVGRSCHIVQYKGKTVMLDAGIHPSYEGLGALPFYDEFD 75
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV------- 125
S +D+LLITHFH DH+ASLPY L KT F G+VFMTH TKAIYK D V+V
Sbjct: 76 LSTVDLLLITHFHQDHSASLPYVLAKTDFHGKVFMTHPTKAIYKWTTQDAVRVHNTHTPA 135
Query: 126 SKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI 181
S S D L+ EQDI ++ I+ + F+ T NGI+F Y AGHVLGA M+ ++I
Sbjct: 136 SSTSGTDGYVSQLYTEQDILSTLPMIQTISFNTTHSHNGIRFTPYPAGHVLGACMYHIEI 195
Query: 182 AGVRVLYTGDYSREEDRHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
AG+ +L+TGDYSRE DRHL A + P D I EST+G+ +PR RE + + +
Sbjct: 196 AGLNILFTGDYSREIDRHLIPATIPPNVKIDCLITESTFGISTREPRQERENQLMKSVTN 255
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
+++GGRVL+P A+G QELLLIL++YW H E+ PIYYAS LA+K M VYQTY+ +
Sbjct: 256 ILNRGGRVLMPTTAVGNTQELLLILEDYWQRHEEYRRFPIYYASGLARKVMVVYQTYVDN 315
Query: 301 MNERIRNQF----------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MN+RI+ +F + P+ F+ + L +D F DVG SVV+ASPG LQ+G SR
Sbjct: 316 MNDRIKAKFQASAAAAGDGGAAGPWDFQFVRALKGVDRFEDVGGSVVLASPGMLQNGPSR 375
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA---------------- 394
L + W D KN VI GY VEGT+AK I+ EP + + TA
Sbjct: 376 ALLERWAPDPKNGVVITGYSVEGTMAKQIMLEPDSIAAVTNRTANMSLGKRAGAEEQQMI 435
Query: 395 PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKI 454
P V +F+ H D + F++E P +ILVHGE H MGRLK++L L+ K+
Sbjct: 436 PRRCTVQEFNFAVHVDGQENRDFIEETGAPVVILVHGEKHNMGRLKSRL---LSLKKMKV 492
Query: 455 ITPKNCQSVEMYFNSEKMAKTIGRL------------------------------AEKTP 484
+P NC+ V + F EK+A+ +GRL AE+
Sbjct: 493 YSPANCEEVRIPFRQEKIARVVGRLANQIQPPAIPPSPPDSDDEGEEGSDSKRVKAEEAQ 552
Query: 485 EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRI 524
+ + VSG+LV+ F +MAP+DL ++ L+T + QRI
Sbjct: 553 DQAQIVSGVLVQNDFKLSLMAPEDLKEYAGLTTTTLVCRQRI 594
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 257/591 (43%), Positives = 341/591 (57%), Gaps = 83/591 (14%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D GIHP+Y G+ ALP++DE D
Sbjct: 17 DDPVD-PSDELMFLALGGGNEVGRSCHIIQYKGKTVMLDAGIHPSYEGLGALPFYDEFDL 75
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------S 126
S +D+LLITHFH DH+ASLPY L KT F GRV+MTH TKAIYK D V+V S
Sbjct: 76 STVDLLLITHFHQDHSASLPYVLAKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPAS 135
Query: 127 KVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA 182
S D L+ EQDI ++ I+ + FH T NGI+F Y AGHVLGA M++++IA
Sbjct: 136 STSGTDGYVSQLYTEQDILSTLPMIQTISFHTTHSHNGIRFTPYPAGHVLGACMYLIEIA 195
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHST 241
G+ +L+TGDYSRE DRHL A +P+ D I EST+G+ PR RE I
Sbjct: 196 GLNILFTGDYSRETDRHLIPAAVPRNVKIDCLITESTFGISTRTPRQERENALIKSITGI 255
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+++GGRVL+P A+G QEL+LIL++YW H E+ P+YYAS LAKK M VYQTY+ +M
Sbjct: 256 LNRGGRVLMPTTAVGNTQELMLILEDYWQRHEEYRRFPMYYASGLAKKVMIVYQTYVETM 315
Query: 302 NERIRNQF-----------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
N+ I+ +F P+ F I L S+D + DVGPSVV+ASPG LQ+G SR
Sbjct: 316 NDTIKAKFQASAAAASDSSGAGGPWDFNFIRQLKSMDRYEDVGPSVVLASPGMLQNGPSR 375
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP--------KEVTLMN-----GLTA--- 394
L + W D KN +I GY VEGT+AKTI++EP K+ T MN G A
Sbjct: 376 TLLERWAPDAKNGVIITGYSVEGTMAKTIMTEPDSIPAVTGKKNTGMNIGKRPGALADGE 435
Query: 395 ----PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC 450
P V +F+ H D + F++E+ P +ILVHGE H M RLK++L L
Sbjct: 436 RQMIPRRCTVQEFNFAVHVDGQENREFIEEVGAPVVILVHGEKHNMNRLKSRL---LGLG 492
Query: 451 NTKIITPKNCQSVEMYFNSEKMAKTIGRLA------------------------------ 480
K+ +P NC+ V + F +K+A+ +GRLA
Sbjct: 493 KMKVYSPANCEEVRIPFRQDKLARVVGRLASQISPPTLLPSPPASSEDDEEDTADGESKK 552
Query: 481 ---EKTPEV-GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
E+T G+ V+G+LV+ F +MAP+DL ++ L+T I QRIT
Sbjct: 553 IKSEQTQSTGGQLVTGVLVQNDFKLSLMAPEDLKEYAGLTTTTIVCRQRIT 603
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/500 (45%), Positives = 313/500 (62%), Gaps = 38/500 (7%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLGAG EVGRSCV YKG T++FDCG+HPAYSG+ ALP FD +D +++DV L+
Sbjct: 108 DWVEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLV 167
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--------- 132
THFHLDH +LPY + KT F+GRVFMT T+ I KL+ DY ++S S
Sbjct: 168 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAA 227
Query: 133 --------------MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
L+DE D++ ++ +E LDFHQ VEV GIK C+ AGHVLGA MF+
Sbjct: 228 QAAAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVGGIKVSCFGAGHVLGACMFL 287
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
++I GVR+LYTGD+SRE DRH+ AE+P + I ESTYG+ +H R +RE+RF +
Sbjct: 288 IEIGGVRMLYTGDFSRERDRHVPIAEVPPVDVQLLICESTYGIHVHDDRQLRERRFLKAV 347
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
+++GG+ L+P FALGRAQELLLIL+EYW+ HPE ++PI + SPL+ KC V+ ++
Sbjct: 348 VDIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFV 407
Query: 299 LSMNERIRNQ-FANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLF 353
E +R++ NPF F+ + + S++ GP+VVMA+PG LQSG SR++F
Sbjct: 408 DMCGEAVRSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIF 467
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
+ W D KN ++ GY V+GTLA + EP+ + L + + ISFSAH+DY Q
Sbjct: 468 EAWAPDAKNGVILTGYSVKGTLADELKREPETIQLPDRVLR-RRCSFEMISFSAHSDYQQ 526
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN----- 468
T F+ +L PN++LVHGE EM RLK KL E + + TP+ Q V + F
Sbjct: 527 TQEFIGKLKVPNVVLVHGERGEMRRLKEKLEEERPALS--VFTPEILQKVSLQFTPSRCV 584
Query: 469 --SEKMAKTIGRLAEKTPEV 486
+ K+A I RLAEK+ V
Sbjct: 585 VAAGKLADDIQRLAEKSDAV 604
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/579 (42%), Positives = 332/579 (57%), Gaps = 80/579 (13%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKTI+ D GIHP+Y G+ ALP++DE D S +D+LLI
Sbjct: 24 DELMFLALGGGNEVGRSCHIIQYKGKTIMLDAGIHPSYEGLGALPFYDEFDLSTVDLLLI 83
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------SKVSVED-- 132
THFH DH+ASLPY L KT F G+VFMTH TKAIYK D V+V S S D
Sbjct: 84 THFHQDHSASLPYVLSKTNFAGKVFMTHPTKAIYKWTTQDAVRVHNTHAPASSTSGTDGY 143
Query: 133 --MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ EQDI ++ I+ + FH T NGI+F Y AGHVLGA M++++IAG+ VL+TG
Sbjct: 144 VSQLYTEQDILSTLPMIQTISFHTTHSHNGIRFTPYPAGHVLGACMYLIEIAGLNVLFTG 203
Query: 191 DYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DYSRE DRHL A +P+ D I EST+G+ PR RE I + +++GGRVL
Sbjct: 204 DYSRENDRHLIPAAVPRNVKVDCLITESTFGISTRTPRQERENALIKSITTILNRGGRVL 263
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P A+G QELLLIL+++W H E+ PIYYAS LA+K M VYQTY+ MN+RI+ +F
Sbjct: 264 MPTTAVGNTQELLLILEDHWHRHEEYRRFPIYYASGLARKVMVVYQTYVDDMNDRIKAKF 323
Query: 310 ------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+ P+ F+ + L +D F DVG SVV+ASPG LQ+G SR L + W
Sbjct: 324 QASATGPSVGDGGTAGPWDFQFVRALKGVDRFDDVGGSVVLASPGMLQNGPSRALLERWA 383
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMN---------GLTA----------PLNM 398
D KN +I GY VEGT+AK I+ EP + + G A P
Sbjct: 384 PDSKNGVIITGYSVEGTMAKNILLEPDNIPAVTVDRSAGNVLGKKAGGPDGERQMVPRRC 443
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPK 458
V +F+ H D + F++E+ P +ILVHGE H M RLK++L L K+ +P
Sbjct: 444 TVQEFNFAVHVDGQENREFIEEVGAPVVILVHGEKHNMNRLKSRL---LGTGKMKVYSPA 500
Query: 459 NCQSVEMYFNSEKMAKTIGRLA--------------------------EKTPE------- 485
NC+ V + F EK+A+ +GRLA K P+
Sbjct: 501 NCEEVRIPFRQEKVARVVGRLASQVQPPTLLPSPPATSDDEEETTEGENKKPKSELDHES 560
Query: 486 -VGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+G+ +SG+LV+ F +MAP+DL ++ L+T I R
Sbjct: 561 SLGQVISGVLVQNDFKLSLMAPEDLQEYAGLTTTTIICR 599
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/500 (45%), Positives = 313/500 (62%), Gaps = 38/500 (7%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLGAG EVGRSCV YKG T++FDCG+HPAYSG+ ALP FD +D +++DV L+
Sbjct: 108 DWVEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLV 167
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--------- 132
THFHLDH +LPY + KT F+GRVFMT T+ I KL+ DY ++S S
Sbjct: 168 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAA 227
Query: 133 --------------MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
L+DE D++ ++ +E LDFHQ VEV GIK C+ AGHVLGA MF+
Sbjct: 228 QAAAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVGGIKVSCFGAGHVLGACMFL 287
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
++I GVR+LYTGD+SRE DRH+ AE+P + I ESTYG+ +H R +RE+RF +
Sbjct: 288 IEIGGVRMLYTGDFSRERDRHVPIAEVPPVDVQLLICESTYGIHVHDDRQLRERRFLKAV 347
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
+++GG+ L+P FALGRAQELLLIL+EYW+ HPE ++PI + SPL+ KC V+ ++
Sbjct: 348 VDIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFV 407
Query: 299 LSMNERIRNQ-FANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLF 353
E +R++ NPF F+ + + S++ GP+VVMA+PG LQSG SR++F
Sbjct: 408 DMCGEAVRSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIF 467
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
+ W D KN ++ GY V+GTLA + EP+ + L + + ISFSAH+DY Q
Sbjct: 468 EAWAPDAKNGVILTGYSVKGTLADELKREPETIQLPDRVLR-RRCSFEMISFSAHSDYQQ 526
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN----- 468
T F+ +L PN++LVHGE EM RLK KL E + + TP+ Q V + F
Sbjct: 527 TQEFIGKLKVPNVVLVHGERGEMRRLKEKLEEERPALS--VFTPEILQKVSLQFTPSRCV 584
Query: 469 --SEKMAKTIGRLAEKTPEV 486
+ K+A I RLAE++ V
Sbjct: 585 VAAGKLADDIQRLAERSDAV 604
>gi|237839761|ref|XP_002369178.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
gi|211966842|gb|EEB02038.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
Length = 1100
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/500 (45%), Positives = 313/500 (62%), Gaps = 38/500 (7%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLGAG EVGRSCV YKG T++FDCG+HPAYSG+ ALP FD +D +++DV L+
Sbjct: 108 DWVEITPLGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLV 167
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED--------- 132
THFHLDH +LPY + KT F+GRVFMT T+ I KL+ DY ++S S
Sbjct: 168 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAA 227
Query: 133 --------------MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
L+DE D++ ++ +E LDFHQ VEV GIK C+ AGHVLGA MF+
Sbjct: 228 QAAAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVGGIKVSCFGAGHVLGACMFL 287
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
++I GVR+LYTGD+SRE DRH+ AE+P + I ESTYG+ +H R +RE+RF +
Sbjct: 288 IEIGGVRMLYTGDFSRESDRHVPIAEVPPVDVQLLICESTYGIHVHDDRQLRERRFLKAV 347
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
+++GG+ L+P FALGRAQELLLIL+EYW+ HPE ++PI + SPL+ KC V+ ++
Sbjct: 348 VDIVNRGGKCLLPVFALGRAQELLLILEEYWTAHPEIRHVPILFLSPLSSKCAVVFDAFV 407
Query: 299 LSMNERIRNQ-FANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLF 353
E +R++ NPF F+ + + S++ GP+VVMA+PG LQSG SR++F
Sbjct: 408 DMCGEAVRSRALRGENPFAFRFVKNVKSVEAARVYIHHDGPAVVMAAPGMLQSGASREIF 467
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
+ W D KN ++ GY V+GTLA + EP+ + L + + ISFSAH+DY Q
Sbjct: 468 EAWAPDAKNGVILTGYSVKGTLADELKREPETIQLPDRVLR-RRCSFEMISFSAHSDYQQ 526
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN----- 468
T F+ +L PN++LVHGE EM RLK KL E + + TP+ Q V + F
Sbjct: 527 TQEFIGKLKVPNVVLVHGERGEMRRLKEKLEEERPALS--VFTPEILQKVSLQFTPSRCV 584
Query: 469 --SEKMAKTIGRLAEKTPEV 486
+ K+A I RLAE++ V
Sbjct: 585 VAAGKLADDIQRLAERSDAV 604
>gi|66356658|ref|XP_625507.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46226496|gb|EAK87490.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 780
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/485 (47%), Positives = 317/485 (65%), Gaps = 19/485 (3%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
EG+ L I LGAG EVGRSCV +S+KG++++FDCGIHPA+SG+ +LP FD ID S ID+
Sbjct: 20 EGETLYIQVLGAGCEVGRSCVVVSFKGRSVMFDCGIHPAFSGIGSLPVFDAIDVSTIDLC 79
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------ 133
LITHFHLDH+ + PYF+ T F G+VFMT TKAI KL+ DY +V+K S +
Sbjct: 80 LITHFHLDHSGATPYFVSLTDFNGKVFMTEPTKAICKLVWQDYARVNKFSAGSIESEEAP 139
Query: 134 -----LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
L+ E+DI ++++ E++DF Q VE++GI+F CY AGHVLGA MF+V+I GVR+LY
Sbjct: 140 LSSINLYTEKDIEKAINMTEIIDFRQQVELDGIRFSCYGAGHVLGACMFLVEIGGVRILY 199
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSRE+DRH+ AE+P + I ESTYG ++H+PR REKRF + S I++ G+
Sbjct: 200 TGDYSREDDRHVPRAEIPPIDVHVLICESTYGTRIHEPRIDREKRFLGGVQSIITRKGKC 259
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FA+GRAQELLLIL+E+WS P N+PI YASP++ KCM V++TYI + +R Q
Sbjct: 260 LLPVFAIGRAQELLLILEEHWSRTPSIQNVPIIYASPMSIKCMRVFETYINQCGDSVRRQ 319
Query: 309 F-ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF+F +I +NS+++ D+ GP VVMA+PG LQ+G SR +F+IW DK+N
Sbjct: 320 ADLGINPFQFNYIKTVNSLNEIKDIIYNPGPCVVMAAPGMLQNGTSRDIFEIWAPDKRNG 379
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
++ GY V GT A + EP+ + L + P+ + ISFSAH+D+ QT F+ L
Sbjct: 380 IILTGYAVRGTPAYELRKEPEMIQLGEKVI-PMRAKFDQISFSAHSDFTQTQEFINSLKV 438
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
PN+ILVHGE E K K + + + P+ Q V + F +++ IG +
Sbjct: 439 PNVILVHGERGEC--KKLKDKLKELSPSLAVFAPEILQKVGLTFPTQQAIHAIGSIXNXI 496
Query: 484 PEVGE 488
+ E
Sbjct: 497 KNLTE 501
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/597 (41%), Positives = 345/597 (57%), Gaps = 102/597 (17%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D S +D+LLI
Sbjct: 23 DELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLI 82
Query: 82 TH----------------------------------------------FHLDHAASLPYF 95
+ FH+DH+++LPY
Sbjct: 83 SQYVGQSLFCVPLVTLPTPSPLSKLGLFMAVDSIPHHISPWFPSMVADFHVDHSSALPYV 142
Query: 96 LEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSMDKIEVLD 151
L KT FKGRVFMTHATKAIYK L+ D V+VS + L+ EQD ++ IE +D
Sbjct: 143 LSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQDHLSTLPLIETID 202
Query: 152 FHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSP 210
F+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREEDRHL AE+P+
Sbjct: 203 FNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLIPAEVPKGVKI 262
Query: 211 DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWS 270
D+ I EST+G+ + PR RE I +++GGRVL+P FALGRAQELLLILDEYW
Sbjct: 263 DVLITESTFGISSNPPRLEREAALMKAITGVLNRGGRVLMPVFALGRAQELLLILDEYWE 322
Query: 271 NHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--------------ANSNPFK 316
HPE IPIYY A++C +MN+ I+ F ++ P+
Sbjct: 323 THPELQKIPIYYIGNTARRC---------AMNDNIKRLFRQRMAEAEASGDKSVSAGPWD 373
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
F+ + L S++ F DVG V++ASPG LQ+G SR+L + W +++N V+ GY VEGT+A
Sbjct: 374 FRFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLERWAPNERNGVVMTGYSVEGTMA 433
Query: 377 KTIISEPKEVT----------LMNGLTA----------PLNMQVHYISFSAHADYAQTST 416
K I++EP+++ + G+ A P V +SF+AH D +
Sbjct: 434 KQILNEPEQIPAVMSRATTGLVRRGMAAGNEEEQKVMIPRRCTVDEVSFAAHVDGVENRN 493
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAK 474
F++E+ P +ILVHGE H+M RLK+KL++ A+ K+ TP NC+ V + F +K+AK
Sbjct: 494 FIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVKVYTPGNCEEVRIPFKKDKIAK 553
Query: 475 TIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRIT 525
+G+LA+ P + G+ +SG+LV+ GF +MAPDDL ++ L+T IT Q IT
Sbjct: 554 VVGKLAQIAPPSEQDDGQLMSGVLVQNGFNLSLMAPDDLREYAGLTTTAITCKQHIT 610
>gi|401404496|ref|XP_003881737.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
gi|325116150|emb|CBZ51704.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
Length = 1033
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 225/490 (45%), Positives = 312/490 (63%), Gaps = 34/490 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D + ITPLGAG EVGRSCV + YKG T++FDCG+HPAYSG+ ALP FD +D +++DV LI
Sbjct: 104 DWVEITPLGAGCEVGRSCVIVRYKGVTVMFDCGVHPAYSGLGALPIFDAVDMTSVDVCLI 163
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS--------------- 126
THFHLDH +LPY + KT F+GRVFMT T+ I KL+ DY ++S
Sbjct: 164 THFHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQAPEQANAAASQ 223
Query: 127 --------KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
K + L+DE D+++++ E LDFHQ VEV G+K C+ AGHVLGA MF+
Sbjct: 224 RASSGQGDKSGAGNYLYDEDDVDKTVQMAECLDFHQQVEVGGVKISCFGAGHVLGACMFL 283
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTD-V 237
++I GVR+LYTGD+SRE+DRH+ AE+P + I ESTYG+ +H R +RE+RF V
Sbjct: 284 IEIGGVRMLYTGDFSREKDRHVPIAEVPPVDVQLLICESTYGIHVHDDRQLRERRFLKAV 343
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ +++GG+ L+P FALGRAQELLLIL+EYW+ HPE ++PI + SPL+ KCM V+ +
Sbjct: 344 VDIVLNRGGKCLLPVFALGRAQELLLILEEYWTAHPEVCHVPILFLSPLSSKCMVVFDAF 403
Query: 298 ILSMNERIRNQ-FANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQL 352
+ + +RN+ NPF F+ + L S++ GP+V+MA+PG LQSG SR++
Sbjct: 404 VDMCGDAVRNRALRGENPFAFRFVKNLKSVESARVYIHHDGPAVIMAAPGMLQSGASREI 463
Query: 353 FDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYA 412
F+ + KN ++ GY V+GTLA + EP+ + L + + ISFSAH+DY
Sbjct: 464 FEALAPESKNGVILTGYSVKGTLADELKREPETIQLPDRVLR-RRCSFEMISFSAHSDYQ 522
Query: 413 QTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL-ADCNTKIITPKNCQSVEMYFNSEK 471
QT F+ +L PN++LVHGE EM RLK KL E A C + TP+ Q V + F +
Sbjct: 523 QTQDFIGKLKVPNVVLVHGERGEMRRLKEKLEEERPALC---VFTPEILQKVSLQFTPSR 579
Query: 472 MAKTIGRLAE 481
G+LA+
Sbjct: 580 CVVAAGKLAD 589
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/500 (47%), Positives = 311/500 (62%), Gaps = 24/500 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
+L ITPLGAGNEVGRSC+++ YK +L D GIHPA++G ALP+ D ID ID L +T
Sbjct: 6 KLKITPLGAGNEVGRSCIHIEYKQTQLLLDIGIHPAFTGPCALPFLDVIDLHKIDALFVT 65
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
HFHLDHA +LPY EKT FKG++FMTH TK+I K LL DY KV S + ++ E D+
Sbjct: 66 HFHLDHAGALPYLTEKTNFKGKIFMTHPTKSILKYLLNDYTKVVNASSNEDMYTEADLKN 125
Query: 143 SMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
+KI +D+ Q +++ IK AGHVLGAAMF++ I ++LYTGDYS E DRHL+
Sbjct: 126 CYNKIFAIDYFQEIKIKDIKVVSLNAGHVLGAAMFLLKIGSKKLLYTGDYSTEPDRHLKE 185
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A+ P + I ESTYGVQ H PR REKRF + + I + G+VL+P FALGRAQE+L
Sbjct: 186 AKCPG-KINFLITESTYGVQCHLPREEREKRFLNAVRDIIKRRGKVLLPVFALGRAQEIL 244
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
LIL+EYW N+ + N+PIYYAS LA++C+ +YQ Y +Q + FKFK+I
Sbjct: 245 LILEEYWDNNEDLQNVPIYYASALARRCIGIYQQY---------SQSDKNVDFKFKYIRN 295
Query: 323 LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISE 382
+N+ DD + P VVMASPG LQSGLSR LF+ WC DK+N +I GY V+GTLAK I++E
Sbjct: 296 INTFDDRN--LPCVVMASPGMLQSGLSRDLFEKWCEDKRNGVIIAGYCVQGTLAKEILNE 353
Query: 383 PKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTK 442
P+EV + G LN V ISFSAH DY Q F+ P + LVHGE +EM RLK
Sbjct: 354 PEEVEGIAGNKLKLNCSVDCISFSAHVDYLQNKEFITSCDPEVLFLVHGEFNEMNRLKNA 413
Query: 443 LMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQ 502
L + NT +N + + + + + TI E E I++ KG Y+
Sbjct: 414 LKRD----NT--FGLRNGEFLHIKIDEPRFC-TIKNFKE-----DEIFDAIIIGKGDAYE 461
Query: 503 IMAPDDLHIFSQLSTANITQ 522
I +D+ F L A ++
Sbjct: 462 IHRMNDVREFRILHKAKLSN 481
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/524 (44%), Positives = 322/524 (61%), Gaps = 48/524 (9%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D S +D+LLI
Sbjct: 22 DELLFHCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDLSTVDILLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFHLDH+ SLPY L KT FKGRVFMTHATKAIYK L+ D V+VS S L++E
Sbjct: 82 SHFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+TGDYSREED
Sbjct: 142 HDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 201
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +AE+P+ D+ I EST+G+ + PR RE + S I++GGRVL+P FALG
Sbjct: 202 RHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKSVTSIINRGGRVLMPVFALG 261
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYWS HPE +PIYY +A++CM VYQTYI +MNE I+ F
Sbjct: 262 RAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEA 321
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ P+ F+ + L ++D F DVG V++ASPG LQ+G SR+L + W +++N
Sbjct: 322 EARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGMLQTGTSRELLERWAPNERN 381
Query: 363 ACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL 421
++ GY VEGT+ K II+EP+++ +M+ A I + S
Sbjct: 382 GVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDDQKIMIQRRCTVDEIS------ 435
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
L+ L + + K+ TP NC V + F +K+A+ +GRLAE
Sbjct: 436 -----------------LQLTLNVD-KEVKVKVYTPANCDEVRIPFMVDKVARVVGRLAE 477
Query: 482 KTPEVGETVS----GILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+P +G+ S G+LV+ GF +MA DDL ++ L+T +T
Sbjct: 478 TSPPIGQDDSRLMDGVLVQNGFKLSMMASDDLREYAGLTTTMVT 521
>gi|71027889|ref|XP_763588.1| cleavage and polyadenylation specificity factor protein [Theileria
parva strain Muguga]
gi|68350541|gb|EAN31305.1| cleavage and polyadenylation specificity factor protein, putative
[Theileria parva]
Length = 708
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/543 (42%), Positives = 329/543 (60%), Gaps = 44/543 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ IT LGAG EVGRSCVY+ + ++FDCG+HPA SG+ ALP F+ +D S + V L+
Sbjct: 3 DRVRITVLGAGCEVGRSCVYVERENSCLMFDCGLHPALSGVGALPVFEAVDISKVQVCLV 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE---- 137
THFHLDH ++PY L KT F GR+ MT ATK+I LL TDY ++ ++ +F++
Sbjct: 63 THFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFNDDDES 122
Query: 138 -------------QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
+D+ ++D+IE +DFHQ + VN +K CY AGHVLGA MF+++I GV
Sbjct: 123 MDELVCGSGLYSFEDVEHALDRIETIDFHQEITVNDMKISCYRAGHVLGACMFLIEIGGV 182
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
R+LYTGDYS E+DRHL +AE+P + + I ESTYG+++H+ R+ RE RF V+ I +
Sbjct: 183 RILYTGDYSMEKDRHLPSAEIPLTNVHLLISESTYGIRVHEERSQREMRFLHVVMDIIMR 242
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
G+ L+P FALGR+QE+LLILD+YW N+ + HN+PI+Y SPLA K + VY+T++ E
Sbjct: 243 NGKCLLPVFALGRSQEILLILDDYWENNKQLHNVPIFYISPLASKSLKVYETFVGQCGEY 302
Query: 305 IRNQFANS-NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSD 359
I+ N NPF FK + SI + GP ++M SPG LQ G S ++F++ C D
Sbjct: 303 IKQSVYNGFNPFNFKFVRYARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLEVFELLCPD 362
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
+N V+ GY V+GTLA + +P+ + L + P V ISFSAHADY QT F+K
Sbjct: 363 NRNGVVLTGYAVKGTLADELKKDPELINLGTKVIKP-RCSVEQISFSAHADYNQTKGFIK 421
Query: 420 ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRL 479
+L PN+ILVHGE +EM R+K KL ++ + P+ Q V + F + TIG L
Sbjct: 422 KLSVPNVILVHGERNEMKRMKDKLEEDIP--QLTVFMPEVLQEVTLTFTPQCFIDTIGSL 479
Query: 480 A------------------EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+ + E+ E VS +L+K +I+ DD+ F LS +
Sbjct: 480 SSDLQLLDSTTLGGVFSVLDGNKEIDEVVSAVLLKDK-DERIIYSDDVKEFDNLSINALN 538
Query: 522 QRI 524
Q++
Sbjct: 539 QKM 541
>gi|85001073|ref|XP_955255.1| cleavage and polyadenylation specificty factor, subunit [Theileria
annulata strain Ankara]
gi|65303401|emb|CAI75779.1| cleavage and polyadenylation specificty factor, subunit, putative
[Theileria annulata]
Length = 1282
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 231/554 (41%), Positives = 333/554 (60%), Gaps = 54/554 (9%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D++ IT LGAG EVGRSCVY+ ++FDCG+HPA SG+ ALP F+ +D S ++V L+
Sbjct: 3 DRVRITVLGAGCEVGRSCVYVERDNSCLMFDCGLHPALSGVGALPVFEAVDISKVEVCLV 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE---- 137
THFHLDH ++PY L KT F GR+ MT ATK+I LL TDY ++ ++ +FD+
Sbjct: 63 THFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFDDDDGM 122
Query: 138 ------------QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 185
+D+ ++D+IE +DFHQ + VN IK CY AGHVLGA MF+V+I GVR
Sbjct: 123 DELVCGSGLYSFEDVEYALDRIETIDFHQEITVNDIKISCYRAGHVLGACMFLVEIDGVR 182
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
+LYTGDYS E+D+HL +AE+P + + I ESTYG+++H+ R+ RE RF V+ I +
Sbjct: 183 ILYTGDYSVEKDKHLPSAEIPSTNVHLLISESTYGIRVHEERSQREMRFLHVVMDIIMRE 242
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G+ L+P FALGR+QE+LLILD YW N+ + HN+PI+Y SPLA K + VY+T++ + I
Sbjct: 243 GKCLLPVFALGRSQEILLILDNYWENNRQLHNVPIFYISPLASKSLRVYETFVGQCGDYI 302
Query: 306 RNQFANS-NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ N NPF FK + SI + GP ++M SPG LQ G S ++F++ C D
Sbjct: 303 KQSVYNGFNPFDFKFVKYARSIKQIRNYLLRDGPCIIMTSPGMLQGGPSLEVFELICPDN 362
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
+N V+ GY V+GTLA + +P+ + L N + P V ISFSAHADY QT F+K+
Sbjct: 363 RNGVVLTGYTVKGTLADELKKDPEFINLGNKVVKP-RCSVEQISFSAHADYNQTKDFIKK 421
Query: 421 LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
L PN+ILVHGE +EM R+K KL ++ + P+ Q + + F ++ +G L+
Sbjct: 422 LSVPNVILVHGERNEMKRMKDKLEEDIRQLT--VFMPEVLQEITLTFTPQRFVDAVGSLS 479
Query: 481 EKTPE-----------------------------VGETVSGILVKKGFTYQIMAPDDLHI 511
E V E +SG+LVK +++ DD+
Sbjct: 480 SNLHELSNTITNDVNSVSTNTKDINGINGDSLEHVDELLSGVLVKNT-DVRLLYSDDVKE 538
Query: 512 FSQLSTANITQRIT 525
FS+L +++ Q++T
Sbjct: 539 FSKLPVSSLNQKMT 552
>gi|430813249|emb|CCJ29377.1| unnamed protein product [Pneumocystis jirovecii]
Length = 574
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/404 (52%), Positives = 284/404 (70%), Gaps = 12/404 (2%)
Query: 124 KVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 183
K S + E+ L++E+D+ +S++KIEV+D+H T+EVNG+KF Y AGHVLGAAMF +++AG
Sbjct: 4 KNSNTTAEEQLYEEKDLIKSLEKIEVVDYHSTIEVNGVKFTPYHAGHVLGAAMFFIEVAG 63
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
+++L+TGDYSREEDRHL AE+P PDI I ESTYG HQP + +E R T +IHS I
Sbjct: 64 IKILFTGDYSREEDRHLIPAEVPPIQPDILITESTYGTASHQPISEKESRLTSIIHSIIR 123
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GGRVLIP FALGR QEL+LI+DEYW NHPE H+IP+YYA LAKKCM VYQT I
Sbjct: 124 RGGRVLIPVFALGRTQELMLIIDEYWHNHPELHSIPVYYACSLAKKCMTVYQTKI----- 178
Query: 304 RIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
F NPF F++IS L S+D F D+GP V++ASPG LQSG+SR L + WC D KN
Sbjct: 179 -----FEERNPFIFRYISSLKSLDRFEDIGPCVMLASPGMLQSGVSRALLEKWCPDPKNG 233
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
++ GY VEGT+AK I++EP E+ ++G P M V ISF AH DY Q S F+ +
Sbjct: 234 LIVAGYCVEGTMAKHILNEPSEIISLSGQKIPRRMTVEEISFEAHVDYIQNSQFIDLINA 293
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTK--IITPKNCQSVEMYFNSEKMAKTIGRLAE 481
+IILVHGE + MGRLK+ L+++ + + I PKNC+++++ F +K+AKTIG +AE
Sbjct: 294 NHIILVHGEQNNMGRLKSALLSKYSHRKNEVHIYNPKNCETLKLTFKGDKIAKTIGHIAE 353
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
PE +SGI+V+K F IM+ +DL FS L+T+ I QR T
Sbjct: 354 TPPENNHVISGIMVQKDFQISIMSSEDLKEFSGLTTSVIMQRQT 397
>gi|358060736|dbj|GAA93507.1| hypothetical protein E5Q_00148 [Mixia osmundae IAM 14324]
Length = 1378
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/538 (41%), Positives = 340/538 (63%), Gaps = 29/538 (5%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LK DA D++ + LGAG EVGRSC + YKG T++ D G+HPAYSGM ALP+ D
Sbjct: 28 LKEGDA-----ADEMEVIMLGAGQEVGRSCCVIKYKGVTLVCDAGVHPAYSGMPALPFID 82
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVS 126
E+D +D +L+THFHLDHAA LPY +EKT FK GRV+MTHATK +Y+LL+ D+V++S
Sbjct: 83 ELDWDTVDAILVTHFHLDHAAGLPYIMEKTNFKDGGGRVYMTHATKDVYELLMQDFVRIS 142
Query: 127 KVSVEDM---LFDEQDINRSMDKIEVLDFHQTVEV--------NGIKFWCYTAGHVLGAA 175
+ D + D +++ S++ I+ + F++ V + ++F Y AGHVLGA+
Sbjct: 143 IIEGTDTSQRIMDAENLEASLETIQGIRFYEEVTIPISSKRSTTSVRFTSYPAGHVLGAS 202
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS---PDICIIESTYGVQLHQPRNIREK 232
MF+++I G RVLYTGDYS E D HL A +P + PD+ I EST+GVQ +P+ IRE
Sbjct: 203 MFLIEIGGARVLYTGDYSTEADMHLIPASVPTWGGKRPDVMICESTFGVQSFEPKAIREA 262
Query: 233 RFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMA 292
+FT+ I + + +GG+VL+PAF+ G +QELLL+LD++W +P+ H PIYY + LA + +
Sbjct: 263 QFTNKIKTILKRGGKVLLPAFSSGVSQELLLVLDDFWEKNPDLHEFPIYYVTSLASRVLK 322
Query: 293 VYQTYILSMNERIRNQFANS-NPFKF---KHISPLNSI-DDFSDVGPSVVMASPGGLQSG 347
VY+ +I S +++I+ + A+ NP+ F + + L SI +D P VV+A+PG LQ G
Sbjct: 323 VYRQHISSQSQKIQQRAASGDNPYDFGKGRFVKELRSIRRGVADKSPCVVVATPGMLQPG 382
Query: 348 LSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSA 407
SR+L + W D++N ++ GY VEG+LA+ + +EP E + G P + V ISF+
Sbjct: 383 TSRELLERWAGDRRNGLILCGYSVEGSLARDLQAEPDEFMSVEGRRIPRRISVDVISFAQ 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCN--TKIITPKNCQSVEM 465
H D++Q ++F+ + P N+ILVHGE+ + L+ L AD K+ P+N Q +++
Sbjct: 443 HVDFSQNASFIDAVRPANLILVHGEARNVTTLQAALQKIYADKKDEMKVYAPRNLQPIKI 502
Query: 466 YFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
++A+ +G LA++ G V G+L K Y ++ P DL F+ LST+ I Q+
Sbjct: 503 RIARNQVARAVGGLAKEHLPDGAPVGGLLFVKDAQYTLLDPKDLKEFTGLSTSTIAQK 560
>gi|403222958|dbj|BAM41089.1| cleavage and polyadenylation specificty factor subunit [Theileria
orientalis strain Shintoku]
Length = 700
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 230/542 (42%), Positives = 327/542 (60%), Gaps = 46/542 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGAG EVGRSCVY ++FDCG+HPA SG+ ALP F+ +D + ++V L+THFH
Sbjct: 15 ITVLGAGCEVGRSCVYAERGNSCVMFDCGLHPALSGVGALPVFEAVDITKVEVCLVTHFH 74
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE-------- 137
LDH ++PY L KT F+GR+FMT ATKAI LL TDY ++ ++ +FD+
Sbjct: 75 LDHCGAIPYLLSKTKFRGRIFMTSATKAICHLLWTDYARMEQLHSVKKIFDQPDALNDEG 134
Query: 138 -------------------QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
D+ ++DKIE +DFH+ + VN IK CY AGHVLGA MF+
Sbjct: 135 QNEDTEMDELVCGSGLYTFDDVEFALDKIETIDFHEELTVNNIKVSCYRAGHVLGACMFL 194
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
V+I GVR+LYTGDYS E+D+HL +AE+P + + I ESTYG+++H+ R RE RF V+
Sbjct: 195 VEIDGVRILYTGDYSVEKDKHLPSAEIPLINVHLLISESTYGIRVHEERGQRESRFMHVV 254
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
I + G+ L+P FALGR+QE+LLILDEYW+N+ + N+PI+Y SPLA K + VY+T++
Sbjct: 255 LDIIMREGKCLLPVFALGRSQEILLILDEYWANNRQLQNVPIFYISPLASKSLKVYETFV 314
Query: 299 LSMNERIRNQFANS-NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLF 353
+ I+ N NPF FK + S+ + GP ++M SPG LQ G S ++F
Sbjct: 315 GLCGDYIKESIYNGHNPFNFKFVKYARSVRQIRNYLLREGPCIIMTSPGMLQGGPSLEVF 374
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
++ D +N V+ GY V+GTLA + +P+ + L + P V ISFSAHADY Q
Sbjct: 375 ELISPDNRNGVVLTGYTVKGTLADELKKDPELINLGTKVIKP-RCSVEQISFSAHADYNQ 433
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMA 473
T F+K+L PN+ILVHGE EM R++ KL+ ++ + P+ Q V + F +
Sbjct: 434 TKEFIKKLSVPNVILVHGERGEMKRMRDKLIEDIPQLT--VFMPEVLQEVTLNFTQNRFV 491
Query: 474 KTIGRLAEKTPEV----------GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+G LA V G+TVS +LVK ++M +L FS+LS +++ Q+
Sbjct: 492 DAVGSLASDLNGVVNDKKTKISSGDTVSTVLVKDS-DMKMMYSTELDQFSKLSISSLNQK 550
Query: 524 IT 525
+T
Sbjct: 551 MT 552
>gi|401882746|gb|EJT46990.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 2479]
gi|406700483|gb|EKD03650.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 8904]
Length = 738
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/555 (41%), Positives = 335/555 (60%), Gaps = 44/555 (7%)
Query: 11 KRRDAPV------SREGD--QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM 62
+RR AP EGD L +T LGAG EVGRSC + ++GKTI+ D G+HPAY G+
Sbjct: 6 RRRQAPAPVQVIADPEGDAPSLSVTMLGAGQEVGRSCCVIQHRGKTIVCDAGLHPAYPGL 65
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF--------------KGRVFMT 108
LP+ DE+D S +D +LITHFH+DHAA+LPY +EK + R +
Sbjct: 66 GGLPFIDELDWSTVDAILITHFHVDHAAALPYIMEKVRLMVLCWELTSDELPGRKRQGVH 125
Query: 109 HATKAIYKLLLTD---YVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFW 164
A A + L TD + L++E D+ S + +D+HQ + ++G ++F
Sbjct: 126 DARDACH--LRTDDDGHRPHQNAEAAGRLYNEADVQASWENTIAVDYHQDINISGGLRFT 183
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224
Y AGHVLGA+MF+++IAG++VLYTGDYSREEDRHL AE+P PD+ I EST+GV
Sbjct: 184 PYHAGHVLGASMFLIEIAGLKVLYTGDYSREEDRHLVIAEVPPVKPDVMICESTFGVHTL 243
Query: 225 QPRNIREKRFTD------------VIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNH 272
R +E++FT ++ + + +GG+VL+P + G QEL L+LD+YW++H
Sbjct: 244 PDRKDKEEQFTSELISRATQLTSALVSNIVRRGGKVLMPIPSFGNGQELALLLDDYWNDH 303
Query: 273 PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFKHISPLNSIDDFSD 331
PE +PIY+AS L ++ M VY+ Y+ +MN IR++FA NPF FK++ L
Sbjct: 304 PELQGVPIYFASGLFQRGMRVYKKYVHTMNANIRSRFARRDNPFDFKYVKWLKDPKRLDH 363
Query: 332 VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMN 390
P VVMAS + GLSR+L + W D KN ++ GY +EGT+A+T++ EP + +L
Sbjct: 364 KQPCVVMASAQFMSFGLSRELLEEWAPDPKNGVIVTGYSIEGTMARTLLGEPDHIESLRG 423
Query: 391 GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC 450
G + P V ISF AH DYAQ S F++E+ +++LVHGE+ +MGRL+ L + A
Sbjct: 424 GRSIPRRCTVKEISFGAHVDYAQNSKFIQEIGAQHVVLVHGEASQMGRLRAALRDQYATR 483
Query: 451 NTKII--TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDD 508
+I TPKN + + + F +E++AK IG LAE+ P G V G+LV K F+Y ++ P D
Sbjct: 484 GQEINIHTPKNLEPLVLNFRTERVAKAIGTLAEERPTHGAEVRGLLVSKDFSYTLLDPKD 543
Query: 509 LHIFSQLSTANITQR 523
L F+ LST+ I QR
Sbjct: 544 LKDFTGLSTSTIVQR 558
>gi|302667649|ref|XP_003025406.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
gi|291189514|gb|EFE44795.1| hypothetical protein TRV_00467 [Trichophyton verrucosum HKI 0517]
Length = 865
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/556 (42%), Positives = 324/556 (58%), Gaps = 89/556 (16%)
Query: 55 IHPAYSGMAALPYFDEIDPSAIDVLLITH------------------------------- 83
+HPA G AALP+FD+ D S +D+LLI+
Sbjct: 1 MHPAKDGFAALPFFDDFDLSTVDILLISQYVHPPLHVRVISATTPLVSHAQMDIQTDIQT 60
Query: 84 ---------------------FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122
FHLDH+ SLPY L KT FKGRVFMTHATKAIYK L+ D
Sbjct: 61 FFSLPFLHVQTCEIRQLTDGSFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDN 120
Query: 123 VKVSKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
V+VS S L++E D ++ IE +DF+ T +N I+ + AGHVLGAAMF+
Sbjct: 121 VRVSNTSSSSDQRTSLYNEHDHLSTLPIIETIDFNTTHTINSIRITPFPAGHVLGAAMFL 180
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+ IAG+ +L+TGDYSREEDRHL +AE+P+ D+ I EST+G+ + PR RE
Sbjct: 181 ISIAGLNILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGISSNPPRLEREAALMKS 240
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ S I++GGRVL+P FALGRAQELLLILDEYWS HPE +PIYY +A++CM VYQTY
Sbjct: 241 VTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIYYIGNMARRCMVVYQTY 300
Query: 298 ILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGG 343
I +MNE I+ F + P+ F+ + L ++D F DVG V++ASPG
Sbjct: 301 IGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLDRFEDVGGCVMLASPGM 360
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-TLMNGLTA--PLNMQ- 399
LQ+G SR+L + W +++N ++ GY VEGT+ K II+EP+++ +M+ A P + Q
Sbjct: 361 LQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIPAVMSAKNAAGPSDDQK 420
Query: 400 --------VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD-- 449
V ISF+AH D + F++ + P +ILVHGE H+M RLK+KL++ D
Sbjct: 421 IMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQMMRLKSKLLSLNVDKE 480
Query: 450 CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS----GILVKKGFTYQIMA 505
K+ TP NC V + F +K+A+ +GRLAE +P +G+ S G+LV+ GF +MA
Sbjct: 481 VKVKVYTPANCDEVRIPFMVDKVARVVGRLAETSPPIGQDDSRLMDGVLVQNGFKLSMMA 540
Query: 506 PDDLHIFSQLSTANIT 521
DDL ++ L+ +T
Sbjct: 541 SDDLREYAGLTATMVT 556
>gi|71654879|ref|XP_816051.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70881152|gb|EAN94200.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 430
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/378 (53%), Positives = 275/378 (72%), Gaps = 3/378 (0%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
+ + D P + D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+F
Sbjct: 23 AFRDSDVPAAASSDEVEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFF 82
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
D I ID++LITHFHLDH +LPYF E+T FKGRVFMT ATKA YK+++ D+++V
Sbjct: 83 DSIRCDEIDLVLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVG-A 141
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
S D++ +E + +++KIE +++H+ V VNGI+F + AGHVLGAA+FMVDIAG++ LY
Sbjct: 142 SANDIVTNEW-LQSTIEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLY 200
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + GGR
Sbjct: 201 TGDFSRVPDRHLLGAEVPSYSPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRC 260
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q
Sbjct: 261 LVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQ 320
Query: 309 FAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N +I
Sbjct: 321 HANHRNPFVFKYIHSLMETRSFEDTGPCVVLASPGMLQSGISLELFERWCGDRRNGIIIA 380
Query: 368 GYVVEGTLAKTIISEPKE 385
GY V+GT+AK I++ KE
Sbjct: 381 GYCVDGTIAKDILTNRKE 398
>gi|365764103|gb|EHN05628.1| Ysh1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 699
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/422 (49%), Positives = 295/422 (69%), Gaps = 25/422 (5%)
Query: 96 LEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDKI 147
+++T F+GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+ S DKI
Sbjct: 1 MQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKI 60
Query: 148 EVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ 207
E +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P
Sbjct: 61 ETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPP 120
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE++LILDE
Sbjct: 121 LSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDE 180
Query: 268 YWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISP 322
YWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK+IS
Sbjct: 181 YWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISY 240
Query: 323 LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISE 382
L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+AK I+ E
Sbjct: 241 LRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLE 300
Query: 383 PKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
P + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE++ MGRLK
Sbjct: 301 PDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEANPMGRLK 360
Query: 441 TKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKTPEVGETV 490
+ L++ A D + P+NC V++ F K+AK +G + E+ E+ E +
Sbjct: 361 SALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEENVEIKEEI 420
Query: 491 SG 492
+
Sbjct: 421 AA 422
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/474 (45%), Positives = 295/474 (62%), Gaps = 20/474 (4%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDP- 73
++ + +LIITPLGAGNEVGRSC+ + ++ K I+FDCGIH G+ ALPYF++ID
Sbjct: 1 MNSDNSKLIITPLGAGNEVGRSCILLQFQEKQIMFDCGIHMNKENKGVMALPYFNKIDKI 60
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
ID++LITHFHLDH +LPYFL+ FKG+++MT TK IY L+L D +KV
Sbjct: 61 EDIDLILITHFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKVKSEDFSQD 120
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L +EQ I +S+ I+ +D+ Q + GIK CY AGHVLGAAMFMV+I GVRVLYTGDYS
Sbjct: 121 LINEQSIEQSLKNIDCIDYDQEIHYQGIKLKCYNAGHVLGAAMFMVEIDGVRVLYTGDYS 180
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
E++RHLR A+LP + I+E+TYG H+ R RE+ F I ST++ GG VL+P F
Sbjct: 181 TEKERHLRPAQLPLEKIHVLIVEATYGDTQHETRTKREENFLKEIVSTLNGGGNVLLPVF 240
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
A GR ELL+ILDEYWS +P+ PIY LA KC ++Q + + + N
Sbjct: 241 ATGRCHELLIILDEYWSKNPQVQQFPIYSTCTLAIKCTHIFQKHFNKLGNKYH---KGEN 297
Query: 314 PFKFKHISPLNSIDD-FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
FKF HI+ + D ++ P VVMASPG LQSG S+Q+++ WC D+KN +I G V+
Sbjct: 298 LFKFNHINTKKHLQDILNNQKPKVVMASPGLLQSGHSKQIYEYWCKDEKNQVIITGPAVQ 357
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+A +I P+ + ++ ISFSAHADY QTS+F+ L P ++ILVHG
Sbjct: 358 GTIAHQLIHNPE---------PDIKIRPAQISFSAHADYLQTSSFIDSLRPQHVILVHGT 408
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN----SEKMAKTIGRLAEK 482
H+ L+ K+ D K+ P+N + VE+ F S+ K IG L +
Sbjct: 409 QHKCRDLQKKIEINFKDIVEKVWAPENQKQVELSFQRSSVSQAGCKAIGELGNQ 462
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/509 (41%), Positives = 306/509 (60%), Gaps = 28/509 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
+ LGAG EVGRSCV + ++GK ++FDCG+HPA SG+ ALP F+ I +++ L+THFH
Sbjct: 3 VVVLGAGCEVGRSCVILEHEGKQVMFDCGLHPALSGVGALPVFEAISIEKVNLCLVTHFH 62
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV------------SVEDM 133
LDH ++PY + KT+FKG + MT T+ I +L+ DY K+ K +++++
Sbjct: 63 LDHCGAVPYLVGKTSFKGTIVMTEPTRVICRLMWADYEKMGKTLQGQTKIGEEGYAMDEL 122
Query: 134 -----LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
LF+ +D+ ++ + I +DFH+ +E++GIK CY AGHVLGA MFMV+I G+RVLY
Sbjct: 123 ITGSGLFNSEDVKKAFEMIRTIDFHEEIEIDGIKLTCYGAGHVLGACMFMVEIGGIRVLY 182
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYS E+DRH+ AE+P + I ESTYG ++H R RE R I + + GG+
Sbjct: 183 TGDYSSEQDRHVPKAEIPPIDVHLLICESTYGTRIHDERTQRETRLIRSILNAVDNGGKC 242
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQE+LLIL+EYW + H +PI+Y SPL+ K + VY+T+I E I+ +
Sbjct: 243 LLPVFALGRAQEILLILEEYWKANRRLHRVPIFYISPLSSKALKVYETFIGVCGEHIKRR 302
Query: 309 FAN-SNPFKFKHISPLNSIDDFSD----VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NP+ F HI ++D P V+M SPG LQ G SR +F+I D +N
Sbjct: 303 VQQGENPYHFTHIKYAPTVDSVRSHLLRDAPCVIMTSPGMLQGGPSRDVFEIIAPDNRNG 362
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
++ GY V+GTLA + EP + L + + + ISFSAHADY QT F+ L
Sbjct: 363 VILTGYTVKGTLADELKKEPDVIKLEDNIIKR-RCFIEQISFSAHADYNQTRDFIDNLQV 421
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
PN++LVHGE EM RL KL+ + N + P+ QSV F E +G+LA++
Sbjct: 422 PNVLLVHGERKEMKRLHDKLLEDRP--NLSVFMPEILQSVTFNFKRESRLLAVGKLAKEL 479
Query: 484 P---EVGETVSGILVKKGFTYQIMAPDDL 509
P E G+TV ++ G ++M +L
Sbjct: 480 PALCEEGKTVEATVLCSGDIKRVMYKSEL 508
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/541 (41%), Positives = 322/541 (59%), Gaps = 44/541 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGAG EVGRSCV+ ++FDCG+HPA SG+ ALP F+ ID S +D+ LITHFH
Sbjct: 20 ITVLGAGCEVGRSCVFAERGKHNVMFDCGLHPALSGVGALPVFEAIDLSKVDLCLITHFH 79
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE-------- 137
LDH ++PY L KT+FKGR+FMT+ATKAI LL TDY ++ ++ +FD
Sbjct: 80 LDHCGAVPYLLSKTSFKGRIFMTYATKAICHLLWTDYARMEQLQTVKSIFDRTAPRDLQD 139
Query: 138 ---------------------QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM 176
D+ ++ KIE +DFH+ +V GIKF CY AGHVLGA+M
Sbjct: 140 GSDSKEGLMDELICGSGLYSFDDVEYALSKIETIDFHEEKDVGGIKFSCYRAGHVLGASM 199
Query: 177 FMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTD 236
F+V++ GVR+LYTGDYS E DRH+ AE+P + + I ESTYG+++H+ R RE+RF
Sbjct: 200 FLVEMDGVRILYTGDYSTEVDRHVPCAEIPPINAHLLICESTYGIRIHEERVQRERRFLR 259
Query: 237 VIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT 296
+ +++GG+ L+P FALGRAQE+LLILDEYW + IPI+Y SPLA+K + VY+T
Sbjct: 260 SVIEIVTRGGKCLLPVFALGRAQEILLILDEYWQANRNLQPIPIFYISPLAQKSLRVYET 319
Query: 297 YILSMNERIRNQFANS-NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQ 351
++ + I+ N NPF F + S+ + S GP +VM SPG LQ G S Q
Sbjct: 320 FVGLCGDYIKECVYNGFNPFNFTFVKYARSVAEISQYLQADGPCIVMTSPGMLQGGPSLQ 379
Query: 352 LFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADY 411
+F+ D +N V+ GY V+GTLA + +P+ V + + L V ISFSAHADY
Sbjct: 380 IFEKIAPDSRNGVVLTGYTVKGTLADELRRDPEVVNVGHKTIKRL-CSVDQISFSAHADY 438
Query: 412 AQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEK 471
QT F++ L PN+ILVHGE +EM R++ KL E+ + + + P+ Q + + F +
Sbjct: 439 HQTKEFIRRLSVPNVILVHGERNEMTRMRDKLSEEINELS--VFMPEVLQMITLNFPPDT 496
Query: 472 MAKTIGRLAEKTPEVG-----ETV--SGILVKKGFTYQIMAPDDLHIFSQLSTANITQRI 524
+G++A+ + +TV S +++ +++ DDL L + + Q++
Sbjct: 497 TIHAVGQIADDAKRIATHGPDDTVAYSSVVLVGENKPKVVYADDLENSVSLDLSYLDQQM 556
Query: 525 T 525
T
Sbjct: 557 T 557
>gi|357618299|gb|EHJ71335.1| hypothetical protein KGM_14386 [Danaus plexippus]
Length = 324
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 194/315 (61%), Positives = 240/315 (76%), Gaps = 11/315 (3%)
Query: 11 KRRDAPVS-REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
+R PV E DQL I PLGAG EVGRSC+ + +KGK I+ DCGIHP SGM ALP+ D
Sbjct: 6 RRGTDPVPMEESDQLTIRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVD 65
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
I+ +D+LLI+HFHLDH+ +LP+FL KT+FKGRVFMTHATKAIY+ L++DY+KVS +S
Sbjct: 66 LIEADEVDLLLISHFHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKVSNIS 125
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ E D+ SMD+IE ++FH+ +V G++FW Y AGHVLGAAMFM++IAGV+VLYT
Sbjct: 126 TEQMLYTESDLEGSMDRIETINFHEEKDVRGVRFWAYNAGHVLGAAMFMIEIAGVKVLYT 185
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD+SR+EDRHL AAE+P PD+ I + R RE RFT ++ + +GGR L
Sbjct: 186 GDFSRQEDRHLMAAEIPTVHPDVLITK----------REERESRFTTLVSDVVGRGGRCL 235
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FALGRAQELLLILDEYWS HPE +IPIYYAS LAKKCMAVYQTY+ +MN+RIR Q
Sbjct: 236 IPVFALGRAQELLLILDEYWSLHPELQDIPIYYASSLAKKCMAVYQTYVNAMNDRIRRQI 295
Query: 310 ANSNPFKFKHISPLN 324
A +NPF F+HIS L
Sbjct: 296 AVNNPFVFRHISNLK 310
>gi|323453344|gb|EGB09216.1| hypothetical protein AURANDRAFT_71470 [Aureococcus anophagefferens]
Length = 1101
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/428 (49%), Positives = 273/428 (63%), Gaps = 20/428 (4%)
Query: 117 LLLTDYVKV--SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGA 174
+LL+DY+++ E L+DE+D+ R D++E++DFHQ VE GI+FW Y AGHVLGA
Sbjct: 1 MLLSDYIRLLPQDDRGEGGLYDEEDLARCCDRVELVDFHQVVEHEGIRFWSYNAGHVLGA 60
Query: 175 AMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRF 234
AMFM++I GVR+LYTGDYS EEDRHL AE+P P + I+ESTYG Q H+ R++RE F
Sbjct: 61 AMFMIEIGGVRLLYTGDYSLEEDRHLVPAEVPTLEPHVLIMESTYGTQKHESRDVREALF 120
Query: 235 TDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVY 294
T I + +GGR LIP FALGRAQELLLILDEYW + +P++YAS +A + + VY
Sbjct: 121 TSTIERIVQRGGRCLIPVFALGRAQELLLILDEYWKEREDLQRVPVFYASKMASRALRVY 180
Query: 295 QTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
QTYI MN +R+Q SNPFKF H+ L SIDD D GP VV+A+PG LQSG+SRQLFD
Sbjct: 181 QTYINMMNMHVRDQMDISNPFKFDHVQNLASIDDLDDSGPVVVLAAPGMLQSGVSRQLFD 240
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQT 414
W S ++N VI GY VEGTLAK I+SEP EV +G T P V ISFSAH DY Q
Sbjct: 241 RWASSERNGVVIAGYSVEGTLAKQILSEPDEVKTQDGRTQPRRCTVVSISFSAHVDYFQN 300
Query: 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTEL----ADCNTKIITPKNCQSVEMYFNSE 470
F++ MP NI+LVHGE +EM RLK KL+ E ++ + +P+N Q+V M F +
Sbjct: 301 FQFVESTMPNNIVLVHGEKNEMSRLKGKLVQETGKWPSESRPTVSSPENGQAVNMRFARD 360
Query: 471 KMAKTIGRL-------------AEKTPEVGETV-SGILVKKGFTYQIMAPDDLHIFSQLS 516
+ +G A+ PE V SGILV K + A D+L S LS
Sbjct: 361 RRVACVGAREEDPFKHKRRADDADAAPEKRRVVKSGILVSKDLRCTLYADDELRESSPLS 420
Query: 517 TANITQRI 524
++ Q +
Sbjct: 421 VTSLRQTL 428
>gi|82596170|ref|XP_726151.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii 17XNL]
gi|23481438|gb|EAA17716.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii]
Length = 942
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/545 (39%), Positives = 322/545 (59%), Gaps = 67/545 (12%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + + +I+ DCGIHPA+ G+ LP +D D S IDV LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISKIDVCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------------SVE 131
+DH+ +LPY + KT FKGRVFMT ATK+I LL +DY ++ K +E
Sbjct: 66 MDHSGALPYLINKTRFKGRVFMTEATKSICYLLWSDYARIEKCMNLMNKNKSMKSKKELE 125
Query: 132 D----------------------------------------MLFDEQDINRSMDKIEVLD 151
D +L+D+ DI +M+ IE ++
Sbjct: 126 DNGSDGIDNINNDGYISNDDNDDAYYDNYIVDKNNDENSNNVLYDDDDIEATMELIETIN 185
Query: 152 FHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPD 211
FH+ +E+ +KF Y AGHV+GA MF+V+I +R+LYTGDYSRE DRH+ AE+P
Sbjct: 186 FHENIELENVKFTAYRAGHVIGACMFLVEINNIRLLYTGDYSREIDRHIPIAEIPNIDVH 245
Query: 212 ICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSN 271
+ I E TYG+++H R RE F +++ + ++ G+VL+P FALGRAQE+LLIL+E+W
Sbjct: 246 VLICEGTYGIKVHDNRRKREAIFLNMLTNILNSKGKVLLPVFALGRAQEILLILEEHWDR 305
Query: 272 HPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDD- 328
+P IPI+Y S +A K + +Y+TYI ++ I+ + N NPF FK++ S+D
Sbjct: 306 NPNLQKIPIFYISSMATKSLCIYETYINLCSDFIK-KIVNEGKNPFNFKYVKYAKSLDSI 364
Query: 329 ----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
+ D P V+MASPG LQSG+S+ +F+I SDKK+ +I GY ++GTLA + +EP+
Sbjct: 365 LNYLYQDNYPCVIMASPGMLQSGISKSIFNIIASDKKSGVIITGYTIKGTLADELKTEPE 424
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM 444
VT+ + L Q ISFSAH+D+ QT TF+++L PN++LVHG+ +E+ RLK KL+
Sbjct: 425 FVTINDKLVKR-KCQFEQISFSAHSDFNQTKTFIEKLKCPNVVLVHGDRNELNRLKNKLI 483
Query: 445 TELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIM 504
E + TP+ Q V +F ++G+L++ ++ + + L+KK ++M
Sbjct: 484 DEKK--YLSVFTPEILQKVSFHFEHNDHVISLGKLSQHIKKINKKIR--LLKKKNQIKLM 539
Query: 505 APDDL 509
++L
Sbjct: 540 EKNEL 544
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/490 (42%), Positives = 295/490 (60%), Gaps = 38/490 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGAG EVGRSCV+ ++FDCG+HPA SG+ ALP F+ +D + + V L+THFH
Sbjct: 16 ITVLGAGCEVGRSCVFAERGNDCVMFDCGLHPALSGVGALPVFEAVDITKVKVCLVTHFH 75
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE-------- 137
LDH ++PY L KT FKG++ MT ATKAI LL TDY ++ ++ +FD
Sbjct: 76 LDHCGAIPYLLSKTGFKGKILMTCATKAICHLLWTDYARMEQLCSVKKIFDHTDKLNPDG 135
Query: 138 ----------------------QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAA 175
+D+ +++ IE +DFH+ +GIK CY AGHVLGA
Sbjct: 136 TSNEEDEDVVDELVCGSGLYSFEDVEYALNHIETIDFHEERSFDGIKISCYRAGHVLGAC 195
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFT 235
MF+V++ GVR+LYTGDYS E DRHL +AE+P + + I ESTYG+++H+ R RE RF
Sbjct: 196 MFLVEMDGVRILYTGDYSTEYDRHLPSAEIPNINVHLLISESTYGIRIHEERTQREARFL 255
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
V+ + + G+ L+P FALGRAQE+LLIL+EYW+ + + +IPI+Y SPLA K + VY+
Sbjct: 256 HVVLDILMRDGKCLLPVFALGRAQEILLILEEYWAANKQLQSIPIFYISPLASKSLRVYE 315
Query: 296 TYILSMNERIRNQFANS-NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSR 350
T+I E ++ N NPF FK + S++ GP VVM SPG LQ G S
Sbjct: 316 TFIGLCGEYVKESVYNGHNPFNFKFVKYAKSVESIRTYLLRDGPCVVMTSPGMLQGGPSL 375
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
++F+I+ D +N ++ GY V+GTLA + +P EV + + ISFSAH D
Sbjct: 376 EVFEIFAPDNRNGVILTGYTVKGTLADALKKDP-EVLNLGSRVIKRRCTIEQISFSAHTD 434
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSE 470
Y QT F++ L PN+ILVHGE EM R++ KL E+ + + I P+ Q V + F+
Sbjct: 435 YNQTKDFIRRLCVPNVILVHGERSEMKRMRDKLSEEMPELS--IFMPEVLQVVSLNFSQN 492
Query: 471 KMAKTIGRLA 480
+ T+G+LA
Sbjct: 493 RFVNTVGKLA 502
>gi|335775092|gb|AEH58456.1| cleavage and polyadenylation specificity facto subunit 3-like
protein, partial [Equus caballus]
Length = 499
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/327 (58%), Positives = 243/327 (74%), Gaps = 3/327 (0%)
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I ESTYG +H+ R RE RF + +H +++GGR LIP FALGRA
Sbjct: 2 HLMAAEIPNIKPDILISESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRA 61
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FK
Sbjct: 62 QELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFK 121
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 122 HISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKH 181
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM R
Sbjct: 182 IMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMAR 241
Query: 439 LKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
LK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGILV
Sbjct: 242 LKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGILV 301
Query: 496 KKGFTYQIMAPDDLHIFSQLSTANITQ 522
K+ F Y I++P DL ++ L+ + + Q
Sbjct: 302 KRNFNYHILSPCDLSNYTDLAMSTVKQ 328
>gi|124809291|ref|XP_001348538.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|23497434|gb|AAN36977.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 876
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/548 (39%), Positives = 318/548 (58%), Gaps = 70/548 (12%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + +++ DCGIHPA+ G+ LP +D D S +D+ LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------------- 125
+DH+ +LPY + KT FKGR+FMT ATK+I LL DY ++
Sbjct: 66 MDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARIEKYMNVVNKNKLSKNKKGGE 125
Query: 126 -----------------SKVSVED----------------MLFDEQDINRSMDKIEVLDF 152
S +++D +L+DE DI+++MD IE L+F
Sbjct: 126 DDNGLNNGNMLLSNEYSSDENIDDNGDVYENNDNGDGNSNVLYDENDIDKTMDLIETLNF 185
Query: 153 HQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDI 212
HQ E +KF Y AGHV+GA MF+V+I +R LYTGDYSRE DRH+ AE+P +
Sbjct: 186 HQNFEFPNVKFTAYRAGHVIGACMFLVEINNIRFLYTGDYSREIDRHIPIAEIPNIDVHV 245
Query: 213 CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNH 272
I E TYG+++H R RE RF +++ S I+ G+VL+P FALGRAQELLLIL+E+W +
Sbjct: 246 LICEGTYGIKVHDDRKKREIRFLNILTSMINNKGKVLLPVFALGRAQELLLILEEHWDKN 305
Query: 273 PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDFS 330
NIPI+Y S +A K + +Y+T+I E ++ + N NPF FK++ S++ S
Sbjct: 306 KHLQNIPIFYISSMATKSLCIYETFINLCGEFVK-KVVNEGKNPFNFKYVKYAKSLESIS 364
Query: 331 -----DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D P V+MASPG LQ+G+S+ +F+I SDKK+ ++ GY V+GTLA + +EP+
Sbjct: 365 SYLYQDNNPCVIMASPGMLQNGISKNIFNIIASDKKSGVILTGYTVKGTLADELKTEPEF 424
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
VT+ N + ISFSAH+D+ QT TF+++L PN++LVHG+ +E+ RLK KL+
Sbjct: 425 VTI-NDKVVKRKCRFEQISFSAHSDFNQTKTFIEKLKCPNVVLVHGDKNELNRLKNKLIE 483
Query: 446 ELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE--KTPEVGETVSGILVKKGFTYQI 503
E + TP+ Q + +F ++G+L+E K + G+ +KK +
Sbjct: 484 EKQ--YLSVFTPELLQKLSFHFEQNDSLISLGKLSEHIKKINKKIKLEGLKMKK----EK 537
Query: 504 MAPDDLHI 511
M +D HI
Sbjct: 538 MIANDEHI 545
>gi|70945220|ref|XP_742453.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
chabaudi chabaudi]
gi|56521446|emb|CAH74696.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 564
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 211/517 (40%), Positives = 305/517 (58%), Gaps = 66/517 (12%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + + +I+ DCGIHPA+ G+ LP +D D S +DV LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISKVDVCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------------SVE 131
+DH+ +LPY + KT FKGRVFMT ATK+I LL +DY ++ K +E
Sbjct: 66 MDHSGALPYLINKTRFKGRVFMTEATKSICYLLWSDYARIEKCMNLMNKNKSMKSKKELE 125
Query: 132 DMLFD--EQDINR---------------------------------------SMDKIEVL 150
D D E +IN +M+ IE +
Sbjct: 126 DNGSDGMENNINNDGYISNDDNDDAYYDNYIVDRDNDENSNNVLYDDDDIDATMELIETV 185
Query: 151 DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSP 210
+FH+ +E+ +KF Y AGHV+GA MF+V+I +R+LYTGDYSRE DRH+ AE+P
Sbjct: 186 NFHENIELENVKFTAYRAGHVIGACMFLVEINNIRLLYTGDYSREIDRHIPIAEIPNIDV 245
Query: 211 DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWS 270
+ I E TYG+++H R RE F +++ + ++ G+VL+P FALGRAQE+LLIL+E+W
Sbjct: 246 HVLICEGTYGIKVHDNRRKRETIFLNMLTNILNSKGKVLLPVFALGRAQEILLILEEHWD 305
Query: 271 NHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDD 328
+P IPI+Y S +A K + +Y+TYI +E I+ + N NPF FK++ S+D
Sbjct: 306 RNPNLQKIPIFYISSMATKSLCIYETYINLCSEFIK-KIVNEGKNPFNFKYVKYAKSLDS 364
Query: 329 -----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP 383
+ D P V+MASPG LQSG+S+ +F+I SDKK+ +I GY ++GTLA + +EP
Sbjct: 365 ILNYLYQDNYPCVIMASPGMLQSGISKSIFNIIASDKKSGVIITGYTIKGTLADELKTEP 424
Query: 384 KEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKL 443
+ VT+ + L Q ISFSAH+D+ QT TF+++L PN++LVHG+ +E+ RLK KL
Sbjct: 425 EFVTINDKLVKR-KCQFEQISFSAHSDFNQTKTFIEKLKCPNVVLVHGDRNELNRLKNKL 483
Query: 444 MTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
+ E + TP+ Q V +F ++G+L+
Sbjct: 484 IDEKK--YLSVFTPEILQKVSFHFEHNDHVISLGKLS 518
>gi|169598186|ref|XP_001792516.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
gi|111068983|gb|EAT90103.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
Length = 833
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 223/559 (39%), Positives = 315/559 (56%), Gaps = 60/559 (10%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G+HPAY G++A+P++DE D S +DVLLI
Sbjct: 22 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLSTVDVLLI 81
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDE 137
+HFH+DHAASLPY L KT FKGRVFMTH TKAIYK L+ D V+V +S ++ E
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSSSETKIQMYTE 141
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D + IE +DF+ T V+G++ Y AGHVLGAAMF+++IAG+++L+TGDYSRE+D
Sbjct: 142 ADHLNTFPMIEAIDFYTTHTVSGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSREDD 201
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL +A +P P S Y V R H ++ P A G
Sbjct: 202 RHLVSASVP---PGRQGRRSHYRVYFRYLHPYTACRARGPAHEVDNRRPEPRWPCSASGF 258
Query: 258 A-----QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-- 310
+ + + H ++ IPIYY S LA++CM VYQTY+ +MN+ I+ FA
Sbjct: 259 SPSAARKNFFSFSMSIGTKHEQYQKIPIYYNSSLARRCMQVYQTYLGAMNDNIKRLFAER 318
Query: 311 -----------NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
+ F+ + L S+D F D+G V++ASPG +QSG SR+L + W D
Sbjct: 319 MNEAQAEGDTGRRGAWDFRFVRSLKSMDKFQDLGACVMLASPGMMQSGTSRELLERWAPD 378
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA----------------PLNMQVHYI 403
+N +I GY VEGT+AK I+ EP ++ + +A P V
Sbjct: 379 PRNGVIITGYSVEGTMAKQIVHEPDQIPAIMTRSANAARRPGQKENEQSMIPRRCTVQEY 438
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCN--TKIITPKNCQ 461
SF+AH D + F++E+ P +ILVHGE M RLK+KL++ A TKI +P NC+
Sbjct: 439 SFAAHVDGKENMEFVQEVAAPVVILVHGEKGNMTRLKSKLLSFNAQKTIPTKIYSPANCE 498
Query: 462 SVEMYFNSEKMAKTIGRLAEKTP-----------------EVGETVSGILVKKGFTYQIM 504
+ + F ++K+AK +G+LA P E + VSG+LV+ F +M
Sbjct: 499 ELRIPFKTDKVAKVVGKLASIAPPLPRSLSNGDEAEAKYEEEVQMVSGVLVQNDFKISLM 558
Query: 505 APDDLHIFSQLSTANITQR 523
AP+DL ++ L+T I R
Sbjct: 559 APEDLKEYAGLTTTTILCR 577
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/411 (48%), Positives = 272/411 (66%), Gaps = 32/411 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LGAG EVGRSC + Y+GKT++ D G+HPA+SG+A+LP+ DE+D S +D +L+T +
Sbjct: 2 LGAGQEVGRSCCVIKYRGKTVVCDAGVHPAHSGLASLPFVDELDWSTVDAILVTQY---- 57
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
SL KG+V+MTH TKA+YK ++T + + L+ D++ S+ I
Sbjct: 58 -VSL-------QGKGKVYMTHPTKAVYKYIIT--------AGNESLYTPLDVSLSLSHII 101
Query: 149 VLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ 207
+ HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREEDRHL AELP
Sbjct: 102 PISAHQLISPTPGLSFTPYHAGHVLGACMFLIDIAGLQILYTGDYSREEDRHLVRAELPP 161
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
PD+ I+ESTYGVQ H+ R RE RFT +H+ + +GG VL+P FALGRAQELLLILDE
Sbjct: 162 IRPDLLIVESTYGVQGHEARESREARFTSSVHTIVKRGGHVLLPVFALGRAQELLLILDE 221
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNSI 326
YW+ HPE H +P+YYAS LA+KCMAVYQTYI +MN IR++FA NPF FKHIS L +
Sbjct: 222 YWAAHPELHGVPVYYASNLARKCMAVYQTYIHTMNSHIRSRFARKDNPFVFKHISHLPAT 281
Query: 327 DDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISE 382
+ ++ GP V++ASPG + SG SR+L ++W D KN +I GY +EGT+A+ II E
Sbjct: 282 RGWERKIAEAGPCVILASPGFMSSGPSRELLELWAPDAKNGVIITGYSIEGTMARDIILE 341
Query: 383 PKEVTLM------NGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
P E+ P + V YISFSAH D Q + F++ + +++
Sbjct: 342 PDEIKPYRSDGPDGNKMIPRRLSVEYISFSAHVDGPQNTEFIEAVGARHVV 392
>gi|297739607|emb|CBI29789.3| unnamed protein product [Vitis vinifera]
Length = 314
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/303 (67%), Positives = 224/303 (73%), Gaps = 16/303 (5%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS G SLKR D+ ++R GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
Sbjct: 1 MASTGPSQSLKRPDSSLTR-GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 59
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASL-PYFLEKTTFKGRVFMTHATKAIYKLLL 119
MAALPYFDEIDPS IDVLL+T F D L P+ L + R I + L
Sbjct: 60 VMAALPYFDEIDPSTIDVLLVTQFDWDQLQVLHPHLLLSISGAIRSTADIFLNCIRGITL 119
Query: 120 TDYVKVSKVSVEDMLFDEQ--------------DINRSMDKIEVLDFHQTVEVNGIKFWC 165
+V DE+ + + + V+DFHQT+EVNGI+FWC
Sbjct: 120 YKGRWPLQVPFLGFWRDERVNGPTHSLHKVSIHKLEHVLSYVRVIDFHQTLEVNGIRFWC 179
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
YTAGHVLGAAMFMVDIAGVRVLYTGDYS EEDRHLRAAE+PQF PDICIIESTYGVQLHQ
Sbjct: 180 YTAGHVLGAAMFMVDIAGVRVLYTGDYSSEEDRHLRAAEIPQFCPDICIIESTYGVQLHQ 239
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
PR++REKRFTDVIHSTISQGGRVLIPA+ALGRAQELLLILDEYWSNHPE HNIP + P
Sbjct: 240 PRHVREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPELHNIPYFMLPP 299
Query: 286 LAK 288
L K
Sbjct: 300 LQK 302
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/463 (42%), Positives = 285/463 (61%), Gaps = 9/463 (1%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDPSAIDVL 79
G+ L I PLGAG EVGRSC + Y G I+ DCG+HPA G AALP F+ D +I++L
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADIDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+TH+H+DH ASLPY + + FKG+V MT TK I+ L ++ ++S + ++
Sbjct: 78 CVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNPKE 137
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ MD+I+ + FH+ E NG+K WC+ AGH+LGAAMF ++I GV++LYTGD+S E DRH
Sbjct: 138 V---MDRIDTIKFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRH 194
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L+AAE+P F D+ + ESTYG+ + R RE F I + +GG+ LIP F+LGRAQ
Sbjct: 195 LQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIMEILKRGGKCLIPVFSLGRAQ 254
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
E LIL+EYW NH + ++ I++ S +AKKC ++ + MN+ +R + + FKF
Sbjct: 255 EFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQDLRKKTKQAFDFKFIR 314
Query: 320 ISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+S+DD + D P VVMASPG LQ G+SR++F+ WC+DKKN +IPGY VEGTLAK
Sbjct: 315 EGS-SSVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGVIIPGYCVEGTLAKD 373
Query: 379 -IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+ K G V ISF AH+D+A T F+ + P +++L+HGE M
Sbjct: 374 LILDSTKPFINSEGDQVIPKCSVTEISFCAHSDFAHTRKFIGNVKPKHLVLIHGEGKSME 433
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
+L L E + N I P N Q +++ + + +G +A
Sbjct: 434 QLHNALKKEYPELN--IYMPCNTQPIKIPIQPKHEVRLLGEIA 474
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/463 (42%), Positives = 285/463 (61%), Gaps = 9/463 (1%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDPSAIDVL 79
G+ L I PLGAG EVGRSC + Y G I+ DCG+HPA G AALP F+ D +I++L
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADIDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+TH+H+DH ASLPY + + FKG+V MT TK I+ L ++ ++S + ++
Sbjct: 78 CVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNPKE 137
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ MD+I+ + FH+ E NG+K WC+ AGH+LGAAMF ++I GV++LYTGD+S E DRH
Sbjct: 138 V---MDRIDTIKFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRH 194
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L+AAE+P F D+ + ESTYG+ + R RE F I + +GG+ LIP F+LGRAQ
Sbjct: 195 LQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCLIPVFSLGRAQ 254
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
E LIL+EYW NH + ++ I++ S +AKKC ++ + MN+ +R + + FKF
Sbjct: 255 EFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQELRKKTKQAFDFKFIR 314
Query: 320 ISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+S+DD + D P VVMASPG LQ G+SR++F+ WC+DKKN +IPGY VEGTLAK
Sbjct: 315 EGS-SSVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGVIIPGYCVEGTLAKD 373
Query: 379 -IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+ K G V ISF AH+D+A T F+ + P +++L+HGE M
Sbjct: 374 LILDSTKPFINSEGDQVVPKCSVTEISFCAHSDFAHTRKFIGNVKPKHLVLIHGEGKSME 433
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
+L L E + N I P N Q +++ + + +G +A
Sbjct: 434 QLHNALKKEYPELN--IYMPCNTQPIKIPIQPKHEVRLLGEIA 474
>gi|146163951|ref|XP_001012725.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145850|gb|EAR92480.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 750
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 203/472 (43%), Positives = 297/472 (62%), Gaps = 18/472 (3%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
++I PLGAG EVGRSC+ + YKGKTI+FDCG+H +G A+LPYFD I P ID++ ITH
Sbjct: 1 MVIYPLGAGQEVGRSCIILEYKGKTIMFDCGLHMGKNGHASLPYFDNIKPDQIDIIFITH 60
Query: 84 FHLDHAASLPYFLEKTTFKGR---VFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
FHLDH A+LPYF+ KT F G+ V+ T T+AIY+ +L D + +++ L+ DI
Sbjct: 61 FHLDHCAALPYFIAKTDFDGKKQKVYATSPTRAIYRHVLRDSLTDKSENIK--LYTADDI 118
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
+SM+ I V+DF++ +E IKF CY AGHVLGAAMF+V+I GVRVLYTGDYS E+D +
Sbjct: 119 EKSMEVINVIDFYEEMEHENIKFKCYPAGHVLGAAMFLVEIDGVRVLYTGDYSTEKDILI 178
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A++P D+ I+E TYG H+ R+ RE++ T + + G+ L+P FALGRAQE
Sbjct: 179 PPAQIPNEKVDVLIVEGTYGKCNHESRSEREQQLTQEVMRIVKNKGQCLLPVFALGRAQE 238
Query: 261 LLLILDEYW-SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR-NQFANSNPFKFK 318
++LIL+E+W N E +I I++ L+KK ++Q Y M + IR NQ NPF
Sbjct: 239 IVLILEEFWKQNSSELADIKIHFTQNLSKKANQIFQYYKSMMADPIRKNQL---NPFNL- 294
Query: 319 HISPLNSI--DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
H +P N D+ + P V+++SP LQSG+SR + + CS +N ++ G+ E TL+
Sbjct: 295 HYAPNNITKHDEIDENKPCVILSSPFNLQSGISRTIIERICSKPQNGVILTGFCPENTLS 354
Query: 377 KTIISEPKEVT---LMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
K I +E ++ T +++G P NM V ISFSAHAD QT+ F++ + P ++ILVHG S
Sbjct: 355 KEIQNEKQDKTINSIIDGRKIPFNMSVKNISFSAHADLNQTTNFIRAIEPQHVILVHGSS 414
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
++ L+ +LM ++ P N Q + N+ + K +G L ++ +
Sbjct: 415 IKIKELQKELMKTFV--GLQVHAPNNQQKICFNLNATESCKIVGELEKQISQ 464
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/463 (42%), Positives = 285/463 (61%), Gaps = 9/463 (1%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDPSAIDVL 79
G+ L I PLGAG EVGRSC + Y G I+ DCG+HPA G AALP F+ D +I++L
Sbjct: 18 GNYLEIRPLGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADIDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+TH+H+DH ASLPY + + FKG+V MT TK I+ L ++ ++S + ++
Sbjct: 78 CVTHYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQMSSTIQPPKSVNPKE 137
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ +D+I+ + FH+ E NG+K WC+ AGH+LGAAMF ++I GV++LYTGD+S E DRH
Sbjct: 138 V---IDRIDTIKFHELQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRH 194
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L+AAE+P F D+ + ESTYG+ + R RE F I + +GG+ LIP F+LGRAQ
Sbjct: 195 LQAAEVPPFQIDVMMCESTYGIIEQESRIDRENAFIRQIIEILKRGGKCLIPVFSLGRAQ 254
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
E LIL+EYW NH + ++ I++ S +AKKC ++ + MN+ +R + + FKF
Sbjct: 255 EFELILEEYWQNHKDLWSVSIFFFSSIAKKCTTYFEKFTSFMNQELRKKTKQAFDFKFIR 314
Query: 320 ISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+S+DD + D P VVMASPG LQ G+SR++F+ WC+DKKN +IPGY VEGTLAK
Sbjct: 315 EGS-SSVDDGAIDYKPCVVMASPGMLQDGISRKIFERWCTDKKNGVIIPGYCVEGTLAKD 373
Query: 379 -IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+ K G V ISF AH+D+A T F+ + P +++L+HGE M
Sbjct: 374 LILDSTKPFINSEGDQVVPKCSVTEISFCAHSDFAHTRKFIGNVKPKHLVLIHGEGKSME 433
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
+L L E + N I P N Q +++ + + +G +A
Sbjct: 434 QLHNALKKEYPELN--IYMPCNTQPIKIPIQPKHEVRLLGEIA 474
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/465 (42%), Positives = 284/465 (61%), Gaps = 9/465 (1%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVL 79
G L I PLGAG EVGRSC + Y G I+ DCG+HPA G ALP F+ D +I++L
Sbjct: 18 GSVLEIKPLGAGREVGRSCFVLKYMGHNIMLDCGVHPAKKHGEDALPLFEYGDVDSIELL 77
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+THFH+DH A+LPY + + +KG++ MT TK I+ L ++ ++S ++
Sbjct: 78 CVTHFHVDHCAALPYLVLERNYKGKILMTPPTKEIFGELFKEFHQMSSTIQPPKPVSPKE 137
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ +++I+ + FH+ E NG+K WC+ AGH+LGAAMF ++I GV++LYTGD+S E DRH
Sbjct: 138 V---LERIDTIKFHEMQEFNGMKIWCFNAGHILGAAMFCLEINGVKILYTGDFSGESDRH 194
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ +AE+P F D+ I ESTYG+ +PR RE RF I + +GG+ LIP F+LGRAQ
Sbjct: 195 MHSAEVPPFEIDVMICESTYGIMDQEPRVDRENRFVKQIVEILKRGGKCLIPVFSLGRAQ 254
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
E LIL+EYW +H E I++ S +AKKCM ++ Y MN+ +R + + FKF
Sbjct: 255 EFELILEEYWQSHKELWAYSIFFFSSIAKKCMTYFEKYTSFMNQELRKRKRQAFNFKFIR 314
Query: 320 ISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+S+DD + D P VV+ASPG LQ G SR LF+ WC+DK N +IPGY VEGTLAK
Sbjct: 315 DGS-SSVDDSTIDNHPCVVLASPGMLQDGFSRTLFERWCTDKNNGVIIPGYCVEGTLAKQ 373
Query: 379 IISE-PKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
II++ K T G V ISF AH+D+ T+ F+ + P +++L+HGE M
Sbjct: 374 IINDSSKPFTSTTGEVITPKCSVVEISFCAHSDHVHTTNFIGAVKPKHLVLIHGERKSME 433
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
+L L D N I P+ Q++++ + + +G +AEK
Sbjct: 434 QLYNSLKKTYPDLN--IYMPEVSQAIQIPLQVKHEVQLLGEIAEK 476
>gi|449532563|ref|XP_004173250.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like, partial [Cucumis sativus]
Length = 200
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/190 (93%), Positives = 189/190 (99%)
Query: 99 TTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV 158
TTFKGRVFMT+ATKAIYKLLL+D+VKVSKVSVEDML+DEQDINRSMDKIEV+DFHQTVEV
Sbjct: 11 TTFKGRVFMTYATKAIYKLLLSDFVKVSKVSVEDMLYDEQDINRSMDKIEVIDFHQTVEV 70
Query: 159 NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIEST 218
NGI+FWCYTAGHVLGAAMFMVDIAGV+VLYTGDYSREEDRHLRAAE+PQFSPD+CIIEST
Sbjct: 71 NGIRFWCYTAGHVLGAAMFMVDIAGVQVLYTGDYSREEDRHLRAAEMPQFSPDVCIIEST 130
Query: 219 YGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI 278
YGVQLHQPR+IREKRFTDV+HSTISQGGRVLIPAFALGRAQELLLILDEYW+NHPE HNI
Sbjct: 131 YGVQLHQPRHIREKRFTDVVHSTISQGGRVLIPAFALGRAQELLLILDEYWANHPELHNI 190
Query: 279 PIYYASPLAK 288
PIYYASPLAK
Sbjct: 191 PIYYASPLAK 200
>gi|302499334|ref|XP_003011663.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
gi|291175215|gb|EFE31023.1| hypothetical protein ARB_02217 [Arthroderma benhamiae CBS 112371]
Length = 749
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/452 (44%), Positives = 281/452 (62%), Gaps = 37/452 (8%)
Query: 107 MTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSMDKIEVLDFHQTVEVNGIK 162
MTHATKAIYK L+ D V+VS S L++E D ++ IE +DF+ T +N I+
Sbjct: 1 MTHATKAIYKWLIQDNVRVSNTSSSSDQRTSLYNEHDHLSTLPIIETIDFNTTHTINSIR 60
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGV 221
+ AGHVLGAAMF++ IAG+ +L+TGDYSREEDRHL +AE+P+ D+ I EST+G+
Sbjct: 61 ITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLISAEVPKGVKIDVMITESTFGI 120
Query: 222 QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIY 281
+ PR RE + S I++GGRVL+P FALGRAQELLLILDEYWS HPE +PIY
Sbjct: 121 SSNPPRLEREAALMKSVTSIINRGGRVLMPVFALGRAQELLLILDEYWSRHPELQKVPIY 180
Query: 282 YASPLAKKCMAVYQTYILSMNERIRNQF--------------ANSNPFKFKHISPLNSID 327
Y +A++CM VYQTYI +MNE I+ F + P+ F+ + L ++D
Sbjct: 181 YIGNMARRCMVVYQTYIGAMNENIKRLFRQRMAEAEARGDKSVTAGPWDFRFVRSLRNLD 240
Query: 328 DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVT 387
F DVG V++ASPG LQ+G SR+L + W +++N ++ GY VEGT+ K II+EP+++
Sbjct: 241 RFEDVGGCVMLASPGMLQTGTSRELLERWAPNERNGVIMTGYSVEGTMGKQIINEPEQIP 300
Query: 388 LM---NGLTAPLNMQ---------VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
+ P + Q V ISF+AH D + F++ + P +ILVHGE H+
Sbjct: 301 AVMSAKNSAGPSDDQKIMIQRRCTVDEISFAAHVDGVENREFIESVAAPVVILVHGEKHQ 360
Query: 436 MGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS-- 491
M RLK+KL++ D K+ TP NC V + F +K+A+ +GRLAE +P +G+ S
Sbjct: 361 MMRLKSKLLSLNVDKEVKVKVYTPANCDEVRIPFMVDKVARVVGRLAETSPPIGQDDSRL 420
Query: 492 --GILVKKGFTYQIMAPDDLHIFSQLSTANIT 521
G+LV+ GF +MA DDL ++ L+T +T
Sbjct: 421 MDGVLVQNGFKLSMMASDDLREYAGLTTTMVT 452
>gi|302412663|ref|XP_003004164.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
gi|261356740|gb|EEY19168.1| endoribonuclease YSH1 [Verticillium albo-atrum VaMs.102]
Length = 730
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 200/465 (43%), Positives = 280/465 (60%), Gaps = 47/465 (10%)
Query: 107 MTHATKAIYKLLLTDYVKVSKVSVE---DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKF 163
MTH TKAIYK L+ D V+V S ++ E D + +IE +D+H T ++ I+
Sbjct: 1 MTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVYTEADHMNTFPQIEAIDYHTTHTISSIRI 60
Query: 164 WCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQ 222
Y AGHVLGAAMF+++IAG+++ +TGDYSRE+DRHL +AE+P+ D+ I ESTYG+
Sbjct: 61 TPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIA 120
Query: 223 LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYY 282
H PR RE+ I S +++GGRVL+P FALGRAQELLLILDEYW HP+F PIYY
Sbjct: 121 SHVPRVEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHPDFQKYPIYY 180
Query: 283 ASPLAKKCMAVYQTYILSMNERIRNQF--------------ANSNPFKFKHISPLNSIDD 328
AS LA+KCM VYQTY+ +MN+ I+ F P+ F +I L ++D
Sbjct: 181 ASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPWDFNYIRSLKNLDR 240
Query: 329 FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-- 386
F D+G V++ASPG LQ+G+SR+L + W + KN +I GY VEGT+AK I+ EP ++
Sbjct: 241 FDDLGGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQA 300
Query: 387 ----TLMNGLTA----------PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
T+ N P V SF+AH D + F++E+ P +ILVHGE
Sbjct: 301 VMSRTMANARRGPGGDGEKFLIPRRCSVQEYSFAAHVDGTENREFIEEVAAPVVILVHGE 360
Query: 433 SHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET- 489
H M RLK+KL++ A+ KI +PKNC+ + + F +K AK +G+LA P T
Sbjct: 361 QHNMMRLKSKLLSLNANKSIKAKIFSPKNCEELRIPFKQDKTAKVVGKLATIQPPTKSTL 420
Query: 490 --------VSGILVKKGFTYQIMAPDDLHIFSQLSTANIT--QRI 524
++G+LV+ F +MAP+DL ++ L+T IT QR+
Sbjct: 421 EDGQNAPLITGVLVQNDFKLSLMAPEDLREYAGLNTTTITCKQRL 465
>gi|71661559|ref|XP_817799.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70883012|gb|EAN95948.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 625
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/398 (47%), Positives = 271/398 (68%), Gaps = 5/398 (1%)
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
S D++ +E + +++KIE +++H+ V VNGI+F + AGHVLGAA+FMVDIAG++ LY
Sbjct: 5 SANDIVTNEW-LQSTIEKIETVEYHEEVTVNGIRFQPFNAGHVLGAALFMVDIAGMKTLY 63
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGD+SR DRHL AE+P +SPDI I EST G++ + R RE FT +H + GGR
Sbjct: 64 TGDFSRVPDRHLLGAEVPSYSPDILIAESTNGIRELESREERETLFTTWVHDVVKGGGRC 123
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW H E +IPIYYAS LA++CM +YQT++ +MN+R++ Q
Sbjct: 124 LVPVFALGRAQELLLILEEYWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQQ 183
Query: 309 FAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
AN NPF FK+I L F D GP VV+ASPG LQSG+S +LF+ WC D++N +I
Sbjct: 184 HANHRNPFVFKYIHSLMETRSFEDTGPCVVLASPGMLQSGISLELFERWCGDRRNGIIIA 243
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPPN 425
GY V+GT+AK I+++PKEVT +G PL M+ + +SFSAH+D QT F++ L +
Sbjct: 244 GYCVDGTIAKDILTKPKEVTKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQH 303
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
+ILVHG MG+L+ KL + A+ K+ + +N +++ + F+ ++ AK +G LA
Sbjct: 304 VILVHGNVGAMGQLRNKLQQDFAERGMKVYSTRNQEAIRIPFSVQRTAKVMGALANSPAR 363
Query: 486 VGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQ 522
GE VSG L+ G +Y I+ P ++ +F+ L+ A I Q
Sbjct: 364 NGEFVSGALLVSGQHSYNIVHPTEIPLFTDLNVAQIQQ 401
>gi|297265405|ref|XP_002799184.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Macaca mulatta]
Length = 564
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 165/249 (66%), Positives = 202/249 (81%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILD 266
AQELLLILD
Sbjct: 246 AQELLLILD 254
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 427 ILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT 483
ILVHGE +EM RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K
Sbjct: 295 ILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKK 354
Query: 484 PEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 355 PEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 393
>gi|443713763|gb|ELU06463.1| hypothetical protein CAPTEDRAFT_141423, partial [Capitella teleta]
Length = 369
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/294 (59%), Positives = 219/294 (74%), Gaps = 3/294 (1%)
Query: 233 RFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMA 292
RFT +I +++GGR LIP FALGRAQELLLILDEYWS HPE +IPIYYAS LAKKCM+
Sbjct: 2 RFTSLISDIVNRGGRCLIPVFALGRAQELLLILDEYWSQHPELQDIPIYYASSLAKKCMS 61
Query: 293 VYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQL 352
VYQTYI +MN++I+ Q +NPF FKHIS L + F D+GPSVVMASPG +QSGLSR+L
Sbjct: 62 VYQTYINAMNDKIKRQINTNNPFVFKHISNLKASSHFDDIGPSVVMASPGMMQSGLSREL 121
Query: 353 FDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYA 412
F+ WC+DK+N C+I GY VEGTLAK I+SEP+E+ M G PL V YISFSAH DY
Sbjct: 122 FENWCTDKRNGCIIAGYCVEGTLAKHILSEPEEIVTMGGQKLPLKCSVDYISFSAHTDYK 181
Query: 413 QTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYFNS 469
QTS F++ L P +I+LVHGE++EMGRLK L+ E D N I P+N + VE+YF
Sbjct: 182 QTSEFVRILKPTHIVLVHGEANEMGRLKAALIREYEDDPEYNIDIFNPRNTEPVELYFRG 241
Query: 470 EKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
EKMAK +G LA P+ G+ +SGILVK+ F Y IM+P DL+ +++L+ + +TQR
Sbjct: 242 EKMAKIVGNLATDRPKQGQQLSGILVKRNFNYHIMSPTDLNNYTELAMSTVTQR 295
>gi|393912282|gb|EJD76666.1| cleavage and polyadenylation specific factor 3 [Loa loa]
Length = 475
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 166/294 (56%), Positives = 218/294 (74%), Gaps = 3/294 (1%)
Query: 233 RFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMA 292
RFT ++H + +GGR LIPAFALGRAQELLLILDEYW HPE +IP+YYAS LAKKCMA
Sbjct: 6 RFTSIVHEVVGRGGRCLIPAFALGRAQELLLILDEYWEAHPELQDIPVYYASSLAKKCMA 65
Query: 293 VYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQL 352
VYQT++ MN RI+ Q A +NPF FKH+S L SID F DVGP VV+ASPG LQ+GLSR+L
Sbjct: 66 VYQTFVSGMNSRIQKQIALNNPFVFKHVSNLKSIDHFEDVGPCVVLASPGMLQNGLSREL 125
Query: 353 FDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYA 412
F+ WC+D KN C+I GY VEGTLAK I+SEP+E+ MNG + +QV YISFSAH DY
Sbjct: 126 FENWCTDSKNGCIIAGYCVEGTLAKHILSEPEEIVAMNGQKLAMRLQVAYISFSAHTDYT 185
Query: 413 QTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL---ADCNTKIITPKNCQSVEMYFNS 469
QTS F++ L PP+++LVHGE +EM RLK ++ + +D + ++ P+N +SVE++F
Sbjct: 186 QTSDFIRALRPPHLVLVHGEMNEMNRLKAAIIRQYEDESDFHIEVYNPRNTESVELHFRG 245
Query: 470 EKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
EK AK +G++A TP G +SG+L+++ F Y +M DDL ++ LS + +TQR
Sbjct: 246 EKTAKVVGKMAMTTPGDGRILSGVLIRRNFNYHLMHADDLSAYTDLSNSILTQR 299
>gi|300176709|emb|CBK24374.2| unnamed protein product [Blastocystis hominis]
Length = 711
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/505 (39%), Positives = 292/505 (57%), Gaps = 28/505 (5%)
Query: 42 MSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT-T 100
MSYKGK ILFDCG+ P G LPY D I+ +D++LI+HFHLDH +LP +T
Sbjct: 1 MSYKGKVILFDCGVLPDGVGKGTLPYLDAINDDYVDLVLISHFHLDHCGALPVLPRETGQ 60
Query: 101 FKGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDMLFDEQDINRSMDKIEVLDFHQTVEVN 159
+ R+FMT TK I + +L DY+ ++ ED ++ + + + +E ++FH+ N
Sbjct: 61 RRTRIFMTPPTKEIMESILRDYLAITATEDEEDSIYSVSQLEKCIKMMETINFHEDRWHN 120
Query: 160 GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY 219
GIK C+ AGHVLGAAMF V+I +RVLYTGD+SREEDRHL AAE+P ++ I ESTY
Sbjct: 121 GIKVKCFQAGHVLGAAMFCVEIDRIRVLYTGDFSREEDRHLPAAEIPPLRLNVVICESTY 180
Query: 220 GVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEF-HNI 278
G H+ R RE R T + T+ + G+VLIP FALGR QELLL+L+EYW HPE +
Sbjct: 181 GRISHESRREREDRLTKEVVDTLRKRGKVLIPVFALGRTQELLLLLNEYWEKHPEISRHG 240
Query: 279 PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI---SPLNSID-------- 327
I Y +PLAKK M ++Q + ++ R+ NPF ++ P++S+
Sbjct: 241 NIVYLNPLAKKSMMLFQAHKHTILSRL-----EENPFDLPNVDIPDPIDSVSPFFSPHRQ 295
Query: 328 ---DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
DF+ + P V++ SP +++G SR + + S + N ++ GY + T+A+ + +
Sbjct: 296 FLRDFNKLPPCVILCSPAMMENGTSRDVLERMASGENNLVILTGYCMARTIARRLQDNDR 355
Query: 385 EVTLMNGL--TAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTK 442
+ L T + +V ISFSAH+D+ TS+F++ P ++LVHGE M L +
Sbjct: 356 IIPLSGKQMETIDVKCKVVTISFSAHSDFPGTSSFIQATKPERVVLVHGEVSRMNDLVSG 415
Query: 443 LMTELAD-CNTKII---TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
L +L D N +I TP+N + + ++S K+ +G+ AE+ V G+LVKK
Sbjct: 416 LKEKLEDLVNRDLISFYTPENQKRLLFSYHSPKIVSVLGKAAEQNWRESGRVRGVLVKKD 475
Query: 499 FTYQIMAPDDLHIFSQLSTANITQR 523
YQI+A DD+ F+QL I R
Sbjct: 476 LKYQIIAEDDIDKFTQLKLCRILYR 500
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 269/472 (56%), Gaps = 14/472 (2%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA------I 76
++ + PLGAG +VGRSC+ ++ GK I+ DCG+H ++ PYFD I I
Sbjct: 3 EIKLVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGFNDERRFPYFDYITGGKGTLTEHI 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
D ++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 DCVIISHFHLDHCGALPYMSEMKGYDGPIYMTHPTKAICPILLEDYRKITVDRKGETNFF 122
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
D + I M K+ ++ HQT+ V+ ++ Y AGHVLGAAMF++ + VLYTGDY+
Sbjct: 123 DSKMIKDCMKKVIPVNLHQTIHVDDQLEIKAYYAGHVLGAAMFLLKVGTDSVLYTGDYNM 182
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA + + PD+ I ESTY + + RE+ F +H + GG+VLIP FA
Sbjct: 183 TPDRHLGAAWVDKCRPDVLITESTYATTIRDSKRCRERDFLKKVHERVEDGGKVLIPVFA 242
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L+ YW +PIY+++ L K Y+ +I N++I++ F N
Sbjct: 243 LGRAQELCILLESYWDRMNL--KVPIYFSAGLTNKATEYYKLFITWTNQKIKDTFVERNM 300
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F FKHI N + GP VV A+PG L GLS ++F WC+++KN ++PGY V GT
Sbjct: 301 FDFKHIKEFNR-SYIDNPGPMVVFATPGMLHGGLSLEIFKRWCTNEKNMIIMPGYCVAGT 359
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ L G + MQV Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 360 VGNKILSGMRKIELKPGQVVEIKMQVEYMSFSAHADAKGIMQLIRMCEPSNVMLVHGEAG 419
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
+M LK+K+ EL + P N ++V + N L K E+
Sbjct: 420 KMDFLKSKINQEL---HLPCFKPANGETVVITTNPPITVDASTNLLRKNREI 468
>gi|409039929|gb|EKM49418.1| hypothetical protein PHACADRAFT_167242 [Phanerochaete carnosa
HHB-10118-sp]
Length = 702
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 196/506 (38%), Positives = 281/506 (55%), Gaps = 93/506 (18%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGI--HPAYSGMAALPYFDEIDPSAIDVLLI 81
L IT LGAG EVGRSC + Y+G+ I+ D G+ HP
Sbjct: 8 LSITLLGAGQEVGRSCCVLQYRGRAIVCDTGVPVHPV----------------------- 44
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
FHL+HAA+L Y +EK KG+++MTH TKA++K ++ D+V++ S D LF +++
Sbjct: 45 --FHLNHAAALTYIMEKVDGKGKIYMTHPTKALHKFMMQDFVRMDSSS-SDALFSPMELS 101
Query: 142 RSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S+ I + HQ + G+ F Y AGHVLGA MF++DIAG+++LYTGDYSREED+HL
Sbjct: 102 VSLASIIPVSAHQVISPCPGVMFTLYCAGHVLGACMFLIDIAGLKILYTGDYSREEDQHL 161
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AE+P PD G++ +E +FT+ +H+ I +GG VL+P F LGRAQE
Sbjct: 162 VKAEVPPVHPD--------GLEE------KELQFTNSVHNFIQRGGHVLLPTFTLGRAQE 207
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFKH 319
LLLILDEYW HP+ HN+P+YYAS LA KCMA+YQTYI +MN + FA +NPF F
Sbjct: 208 LLLILDEYWKKHPDLHNVPVYYASSLAGKCMAMYQTYIRTMNSNVHFCFAKRNNPFVFNF 267
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
P D +N ++ GY +EGT+ + I
Sbjct: 268 EPP------------------------------------DSRNGTILTGYSIEGTMVRDI 291
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+EP E+ + P + + ISF AH DY+Q S F++ + +I+LVHGE + MGRL
Sbjct: 292 QTEPDEIPSVKEHMIPHKLSIDEISFGAHVDYSQNSEFIELVHTQHIVLVHGEQNAMGRL 351
Query: 440 KTKLMT--ELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKK 497
+ L + D + KI TP+N + +++ F+S + P+ E +SG+LV K
Sbjct: 352 RAALQDCYKNRDEDVKIHTPRNLEPLQLTFHS-----------DLPPQPNEVISGLLVSK 400
Query: 498 GFTYQIMAPDDLHIFSQLSTANITQR 523
++Y ++ P DL F L+T + QR
Sbjct: 401 DYSYTLLDPRDLRDFDGLTTTAVMQR 426
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 185/452 (40%), Positives = 261/452 (57%), Gaps = 17/452 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+ +TPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
L+I+HFHLDH +LPY E + G V+MTH TKAI +LL D+ K++ E F
Sbjct: 63 CLIISHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ ++ HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHIRVGSQSVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ YW +PIY+A L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETYWDRMNL--KVPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FKHI P + ID + GP VV A+PG L +GLS Q+F W + N ++PGY V G
Sbjct: 301 DFKHIKPFDRAFID---NPGPMVVFATPGMLHAGLSLQIFKKWAPVEGNMVIMPGYCVAG 357
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S ++V L N + M V Y+SFSAHAD + + P N++LVHGE+
Sbjct: 358 TVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQCEPSNVLLVHGEA 417
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K++ E N P N ++V++
Sbjct: 418 SKMEFLRKKVLQEF---NIDCYMPANGETVQI 446
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 185/452 (40%), Positives = 260/452 (57%), Gaps = 17/452 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+ +TPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
L+I HFHLDH +LPY E + G V+MTH TKAI +LL D+ K++ E F
Sbjct: 63 CLIIGHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ ++ HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHIRVGSQSVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDEGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ YW +PIY+A L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETYWDRMNL--KVPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FKHI P + ID + GP VV A+PG L +GLS Q+F W + N ++PGY V G
Sbjct: 301 DFKHIKPFDRAFID---NPGPMVVFATPGMLHAGLSLQIFKKWAPVEGNMVIMPGYCVAG 357
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S ++V L N + M V Y+SFSAHAD + + P N++LVHGE+
Sbjct: 358 TVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIHQCEPSNVLLVHGEA 417
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K++ E N P N ++V++
Sbjct: 418 SKMELLRKKVLQEF---NIDCYMPANGETVQI 446
>gi|156343760|ref|XP_001621104.1| hypothetical protein NEMVEDRAFT_v1g222359 [Nematostella vectensis]
gi|156206741|gb|EDO29004.1| predicted protein [Nematostella vectensis]
Length = 388
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 157/238 (65%), Positives = 192/238 (80%), Gaps = 2/238 (0%)
Query: 144 MDKIEV--LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+D+I+ +D EV GIKFWCY AGHVLGA MFM++IAGV++LYTGD+SR+EDRHL
Sbjct: 65 LDEIDTAEIDLLLEKEVGGIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLM 124
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AAE+P SPD+ IIESTYG +H+ R RE RFT +H +++GGR LIP FALGRAQEL
Sbjct: 125 AAEIPSISPDVLIIESTYGTHIHEKREEREARFTGTVHDIVNRGGRCLIPVFALGRAQEL 184
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
LLILDEYW NHPE H+IPIYYAS LAKKCM+V+QTY+ +MN++I+ Q A SNPF FKHIS
Sbjct: 185 LLILDEYWQNHPELHDIPIYYASQLAKKCMSVFQTYVNAMNDKIKKQIAISNPFVFKHIS 244
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
L SID F D+GPSVVMASPG +QSGLSR+LF+ WC+D++N +I GY VEGTLAK +
Sbjct: 245 NLKSIDQFDDIGPSVVMASPGMMQSGLSRELFEQWCTDRRNGVIIAGYCVEGTLAKEV 302
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 9 SLKRRDAPV--SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
S+KR+ V E D L ITPLG+G EVGRSC + +KGK ++ DCGIHP +G+ +LP
Sbjct: 4 SVKRKADSVIPPEESDLLRITPLGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLP 63
Query: 67 YFDEIDPSAIDVLL 80
+ DEID + ID+LL
Sbjct: 64 FLDEIDTAEIDLLL 77
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 43/55 (78%)
Query: 456 TPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLH 510
P NCQSVE+YF EKMAK +G++A + PE G+ +SGIL+K+GF Y ++APDDL
Sbjct: 308 NPPNCQSVELYFRGEKMAKVMGQMAREKPEHGKPLSGILIKRGFNYHLIAPDDLQ 362
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 185/452 (40%), Positives = 264/452 (58%), Gaps = 17/452 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ ++ K I+FDCG+H Y+ P F I S +D
Sbjct: 3 EIKVVPLGAGQDVGRSCILVTIGCKNIMFDCGMHMGYNDDRRFPDFTYITRSGSLTQFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMCKYDGPIYMTHPTKAICPILLEDYRKITVDRKGEKNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K++ ++ HQTV+V+ ++ Y AGHVLGAAMF+V + VLYTGDY+
Sbjct: 123 SQMIKDCMKKVKAINLHQTVKVDDDLEIKAYYAGHVLGAAMFLVKVGCESVLYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H + +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLTKVHECVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ YW +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETYWDRMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRRTFVQHNMF 300
Query: 316 KFKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
+FKHI P + ID + P VV A+PG L GLS Q+F W D KN ++PGY V G
Sbjct: 301 EFKHIKPFDRALID---NPNPMVVFATPGMLHGGLSLQIFKKWAPDDKNMVILPGYCVAG 357
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S + V L N + + V Y+SFSAHAD +K P N++LVHGE+
Sbjct: 358 TVGNKILSGQRTVELENKQIIDVKLAVEYMSFSAHADAKGIMQLIKHAEPENVMLVHGEA 417
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L K+ E+ T PKN ++V++
Sbjct: 418 SKMNFLMQKIEQEIG---TPCYMPKNGETVKI 446
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 189/498 (37%), Positives = 281/498 (56%), Gaps = 23/498 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I+ +D ++
Sbjct: 6 VVPLGAGQDVGRSCILVSIGGKNLMLDCGMHMGYNDERRFPDFSYINKEGPLTDYLDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E F G ++MTH TKAI +LL DY K++ + E F +
Sbjct: 66 ISHFHLDHCGALPYMSEMVGFDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTSEM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K ++ HQT++V+ ++ Y AGHVLGAAM + + V+YTGDY+ DR
Sbjct: 126 IKSCMKKTIAMNLHQTIQVDDELEIKAYYAGHVLGAAMIHIRVGEQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H + +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDRCRPDLLITESTYATTIRDSKRCRERDFLKKVHDAVDKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +PIY++ L +K Y+ +I N++I+N F N F FK
Sbjct: 246 QELCILLETYWDRMN--LKVPIYFSMGLTEKANHYYKMFITWTNQKIKNTFVQRNMFDFK 303
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI P + + ++D GP VV A+PG L GLS Q+F WC +KN ++PGY V GT+
Sbjct: 304 HIKPFDKV--YADNPGPMVVFATPGMLHGGLSLQIFKKWCGGEKNMVIMPGYCVSGTIGW 361
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I++ +++ + N + M V Y+SFSAHAD +++ P N++LVHGE+ +M
Sbjct: 362 KILNGQRKIEMENKQIIEVKMSVQYMSFSAHADAKGIMQLIRQCQPSNVMLVHGEAEKME 421
Query: 438 RLKTKLMTEL-------ADCNTKIITPKNCQSVEMYFNSEKM--AKTIGRLAEKTPEVGE 488
LKTK+ E A+ T I ++ V++ N K AK+ L E P+
Sbjct: 422 FLKTKINEEFGISCFNPANGETVSIEARHGIPVDISLNLLKREPAKSASGLPE--PKRSR 479
Query: 489 TVSGILVKKGFTYQIMAP 506
+ G LV + +++ P
Sbjct: 480 LLHGALVMREQAMKLVEP 497
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 347 bits (891), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 191/506 (37%), Positives = 290/506 (57%), Gaps = 33/506 (6%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSE----------KMAKTIGRLAE- 481
+ +M LK K+ E + P N ++ ++ N K IG L +
Sbjct: 417 AKKMEFLKQKIEQEF---HVNCYMPANGETTTIFTNPSIPVDISLGLLKRETAIGLLPDA 473
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPD 507
K P++ + G L+ K ++++++P+
Sbjct: 474 KKPKL---MHGTLIMKDNSFRLVSPE 496
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 347 bits (890), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 190/503 (37%), Positives = 289/503 (57%), Gaps = 27/503 (5%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++M+H TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMSHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTEL-------ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE-KTP 484
+ +M L+ K+ E A+ T I C V++ K IG + K P
Sbjct: 417 AKKMEFLRQKIEQEFHVSCFMPANGETTTILTNPCIPVDISLGLLKRETAIGAAPDAKKP 476
Query: 485 EVGETVSGILVKKGFTYQIMAPD 507
++ + G L+ K ++++++P+
Sbjct: 477 KL---MHGTLLMKDNSFRLVSPE 496
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 190/503 (37%), Positives = 292/503 (58%), Gaps = 27/503 (5%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN-SEKMAKTIGRLAEKT-----PEV 486
+ +M LK K+ E + P N ++ ++ N S + ++G L +T P+
Sbjct: 417 AKKMEFLKQKIEQEF---HVNCYMPANGETTTIFTNPSIPVDISLGLLKRETAMGLLPDA 473
Query: 487 G--ETVSGILVKKGFTYQIMAPD 507
+ + G L+ K ++++++P+
Sbjct: 474 KKPKLMHGTLIMKDNSFRLVSPE 496
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 191/503 (37%), Positives = 290/503 (57%), Gaps = 27/503 (5%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ ++ HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHETVEKGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W + KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNDKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + T + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQTLEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELA-DC------NTKIITPKNCQSVEMYFNSEKMAKTIGRLAE-KTP 484
+ +M LK K+ E +C T IT V++ K ++G + + K P
Sbjct: 417 AKKMEFLKLKIEQEFRINCAMPLNGETATITTNPNIPVDISLGLLKKESSLGLVPDCKKP 476
Query: 485 EVGETVSGILVKKGFTYQIMAPD 507
+ + G L+ K ++++++P+
Sbjct: 477 RL---MHGTLIMKDNSFRLVSPE 496
>gi|148702077|gb|EDL34024.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Mus musculus]
Length = 261
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 154/222 (69%), Positives = 185/222 (83%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYV
Sbjct: 2 ALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYV 61
Query: 124 KVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 183
KVS +S +DML+ E D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAG
Sbjct: 62 KVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAG 121
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
V++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H ++
Sbjct: 122 VKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVN 181
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYASP
Sbjct: 182 RGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASP 223
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 184/451 (40%), Positives = 260/451 (57%), Gaps = 19/451 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G V+MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
I M K+ ++ HQ V+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SAMIRDCMRKVVAVNLHQAVQVDDELEIKAYYAGHVLGAAMFRIRVGSQSVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA L + PD+ I ESTY + + RE+ F +H I +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWLDKCRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ YW +PIY+A L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETYWDRMNL--RVPIYFAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FKHI P + ID + GP VV A+PG L +GLS Q+F W + N ++PGY V G
Sbjct: 301 DFKHIKPFDRAFID---NPGPMVVFATPGMLHAGLSLQIFKKWAPFEANMVIMPGYCVAG 357
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S ++V L N + M V Y+SFSAHAD +++ P N++LVHGE+
Sbjct: 358 TVGHKILSGARKVELDNRQVVEVKMSVQYMSFSAHADAKGIMQLIQQCEPANVLLVHGEA 417
Query: 434 HEMGRLKTKLMTELA-DCNTKIITPKNCQSV 463
+M L+ K+ E A DC+ P N ++V
Sbjct: 418 GKMDFLRKKIRQEFAIDCS----MPANGETV 444
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 189/503 (37%), Positives = 291/503 (57%), Gaps = 27/503 (5%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN-SEKMAKTIGRLAEKTP------- 484
+ +M LK K+ E + P N ++ ++ N S + ++G L +T
Sbjct: 417 AKKMEFLKQKIEQEF---HVNCYMPANGETTTIFTNPSIPVDISLGLLKRETATGLLPDS 473
Query: 485 EVGETVSGILVKKGFTYQIMAPD 507
+ + + G L+ K ++++++P+
Sbjct: 474 KKPKLMHGTLMMKDNSFRLVSPE 496
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 192/507 (37%), Positives = 292/507 (57%), Gaps = 35/507 (6%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
L+I+HFHLDH +LPYF E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CLIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H TI +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHETIERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSMGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+ +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILGGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTEL-ADCNTKIITPKNCQSVEMYFNSE----------KMAKTIGRLAE 481
+ +M LK K+ E +C+ P N ++V ++ N K +IG + +
Sbjct: 417 AKKMEFLKQKIEQEFHVNCH----MPANGETVTVFTNPNIPVDVSLGLLKRELSIGPVPD 472
Query: 482 -KTPEVGETVSGILVKKGFTYQIMAPD 507
K P++ + G L+ K ++++++P+
Sbjct: 473 SKKPKL---MHGTLIIKDNSFRLVSPE 496
>gi|385305954|gb|EIF49896.1| mrna cleavage and polyadenylation specificity factor complex
subunit ysh1 [Dekkera bruxellensis AWRI1499]
Length = 295
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 156/292 (53%), Positives = 214/292 (73%), Gaps = 11/292 (3%)
Query: 107 MTHATKAIYKLLLTDYVKVSKVSVED---------MLFDEQDINRSMDKIEVLDFHQTVE 157
MT+ TKAIYK LL D+V+V+ ++ + L+ ++D+N S+D+IE LD+H T+E
Sbjct: 1 MTYPTKAIYKWLLNDFVRVTTITDDSNGMDENSNAFLYTDEDLNSSLDRIEXLDYHSTIE 60
Query: 158 VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIES 217
V+GI+F + AGHVLGAAMF+V++ G++ L+TGDYSREEDRHL +AE+P +PD+ I+ES
Sbjct: 61 VDGIRFTAFPAGHVLGAAMFLVEMGGLKFLFTGDYSREEDRHLSSAEVPDVTPDLLIVES 120
Query: 218 TYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHN 277
T+G H PR RE + T VIHST+ QGGR L+P FALGRAQE+LLILDEYW H + N
Sbjct: 121 TFGTATHVPRLERENKLTTVIHSTLQQGGRCLLPVFALGRAQEILLILDEYWQRHKDLQN 180
Query: 278 IPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSIDDFSDVGPS 335
+PIYYAS LAKKCMAVY+ YI MN+ IR +F N NPF FK+I + D D+ P
Sbjct: 181 VPIYYASSLAKKCMAVYERYINMMNDSIRKKFTETNENPFHFKYIKNVAHADRIDDLNPC 240
Query: 336 VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVT 387
V++ASPG LQ+G+SRQL + WC D +N ++ GY V+GT+AK +++EP +++
Sbjct: 241 VMIASPGMLQNGVSRQLLEKWCPDPRNTVIMTGYSVDGTMAKKLLTEPDQIS 292
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 202/524 (38%), Positives = 285/524 (54%), Gaps = 39/524 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID----PSAIDVLLI 81
+TPLGAG +VGRSC+ + GK I+ DCG+H Y+ P F I ++D ++I
Sbjct: 6 VTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLDCVII 65
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDI 140
+HFHLDH +LP+ E + G ++MTH TKAI +LL D KV+ + E F I
Sbjct: 66 SHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFTSAHI 125
Query: 141 NRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
M K+ + HQTV+V+ I+ Y AGHVLGAAMF V + V+YTGDY+ DRH
Sbjct: 126 KDCMKKVIAVTLHQTVQVDSEIEIKAYYAGHVLGAAMFHVKVGNQSVVYTGDYNMTPDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AA + + P+I I ESTY + + RE+ F +H + +GG+VLIP FALGRAQ
Sbjct: 186 LGAAWIDKCRPNILISESTYATTIRDSKRCRERDFLKKVHDCVDRGGKVLIPVFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
EL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F N F+F
Sbjct: 246 ELCILLETYW----ERMNLKAPIYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRNMFEF 301
Query: 318 KHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
KHI P + ++D GP VV A+PG L +GLS QLF W ++ N ++PGY V GT+
Sbjct: 302 KHIRPFDK--SYADTPGPMVVFATPGMLHAGLSLQLFKKWAPNENNMLIMPGYCVSGTVG 359
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++S K+V + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 360 AKVLSGAKKVEIENRQVIEVKMSVQYMSFSAHADAKGIMQLIQYCEPQNVLLVHGEGVKM 419
Query: 437 GRLKTKLMTELA-DCNTKIITPKNCQS------------VEMYFNSEKMA--KTIGRLAE 481
LK K+ E DC P N +S V + ++MA T+G
Sbjct: 420 EFLKQKIQQEYGIDC----YMPANGESAYIPCKPVVPVDVSLSLLKKEMALYDTVGAPDP 475
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
K P + G+LV K ++M P+ F +L + R T
Sbjct: 476 KRP---CRMHGVLVMKDNVLKLMEPE--QAFGELGLNRHSIRFT 514
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 202/524 (38%), Positives = 285/524 (54%), Gaps = 39/524 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID----PSAIDVLLI 81
+TPLGAG +VGRSC+ + GK I+ DCG+H Y+ P F I ++D ++I
Sbjct: 6 VTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADGNLTESLDCVII 65
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDI 140
+HFHLDH +LP+ E + G ++MTH TKAI +LL D KV+ + E F I
Sbjct: 66 SHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFTSAHI 125
Query: 141 NRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
M K+ + HQTV+V+ I+ Y AGHVLGAAMF V + V+YTGDY+ DRH
Sbjct: 126 KDCMKKVIAVTLHQTVQVDSEIEIKAYYAGHVLGAAMFHVKVGNQSVVYTGDYNMTPDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AA + + P+I I ESTY + + RE+ F +H + +GG+VLIP FALGRAQ
Sbjct: 186 LGAAWIDKCRPNILISESTYATTIRDSKRCRERDFLKKVHDCVDRGGKVLIPVFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
EL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F N F+F
Sbjct: 246 ELCILLETYW----ERMNLKAPIYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRNMFEF 301
Query: 318 KHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
KHI P + ++D GP VV A+PG L +GLS QLF W ++ N ++PGY V GT+
Sbjct: 302 KHIRPFDK--SYADTPGPMVVFATPGMLHAGLSLQLFKKWAPNENNMLIMPGYCVSGTVG 359
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++S K+V + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 360 AKVLSGAKKVEIENRQVIEVKMSVQYMSFSAHADAKGIMQLIQYCEPQNVLLVHGEGVKM 419
Query: 437 GRLKTKLMTELA-DCNTKIITPKNCQS------------VEMYFNSEKMA--KTIGRLAE 481
LK K+ E DC P N +S V + ++MA T+G
Sbjct: 420 EFLKQKIQQEYGIDC----YMPANGESAYIPCKPVVPVDVSLSLLKKEMALYDTVGAPDP 475
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
K P + G+LV K ++M P+ F +L + R T
Sbjct: 476 KRP---CRMHGVLVMKDNVLKLMEPE--QAFGELGLNRHSIRFT 514
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/472 (38%), Positives = 274/472 (58%), Gaps = 20/472 (4%)
Query: 7 PPSL-KRRDAPVSREGD----QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG 61
PPSL + R P + + ++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++
Sbjct: 55 PPSLPEERGGPGNTQCRPAMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 114
Query: 62 MAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYK 116
P F I + +D ++I+HFHLDH +LPYF E + G ++MTH T+AI
Sbjct: 115 DRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICP 174
Query: 117 LLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGA 174
+LL DY K++ E F Q I M K+ + HQTV+V+ ++ Y AGHVLGA
Sbjct: 175 ILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGA 234
Query: 175 AMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRF 234
AMF + + V+YTGDY+ DRHL AA + + P++ I ESTY + + RE+ F
Sbjct: 235 AMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDF 294
Query: 235 TDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVY 294
+H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++ L +K Y
Sbjct: 295 LKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYY 352
Query: 295 QTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLF 353
+ +I N++IR F N F+FKHI + F+D GP VV A+PG L +G S Q+F
Sbjct: 353 KLFITWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIF 410
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+SFSAHAD
Sbjct: 411 RKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKG 470
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ + P +++LVHGE+ +MG L+ K+ EL P N ++V +
Sbjct: 471 IMQLVGQAEPESVLLVHGEAKKMGFLRQKIEQEL---RVSCYMPANGETVTL 519
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 180/432 (41%), Positives = 250/432 (57%), Gaps = 14/432 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
ITPLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I S ID ++
Sbjct: 6 ITPLGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYISQEGPLTSYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KVS D F Q
Sbjct: 66 ISHFHLDHCGALPYMSEMVGYSGPIYMTHPTKAIAPILLEDMRKVSVEKKGDQNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V N I+ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSLMVDNEIEIKAYYAGHVLGAAMFWIRVGAQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H + +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECMDRGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ P+Y+A L +K Y+ +I N++IR F N F
Sbjct: 246 QELCILLETYW----ERMNLKAPVYFALGLTEKANNYYKMFITWTNQKIRKTFVQRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + GP VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 302 FKHIKPFDR-SYIDNPGPMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I++ K V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 HKILNGAKRVEFENKQIVEVKMSVEYMSFSAHADAKGIMQLIQHCEPRNVMLVHGEAEKM 420
Query: 437 GRLKTKLMTELA 448
LK K++ E +
Sbjct: 421 EFLKQKILQEFS 432
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 189/454 (41%), Positives = 264/454 (58%), Gaps = 20/454 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+TPLGAG +VGRSC+ +S GK I+FDCG+H Y P F+ I S AID ++
Sbjct: 5 VTPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYDDARRFPDFNFISKSGNFTNAIDCII 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ + E F Q
Sbjct: 65 ITHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTSQM 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ L+ HQTV+V+ ++ Y AGHVLGAAMF V + V+YTGDY+ DR
Sbjct: 125 IKDCMKKVVGLNVHQTVQVDEELEIRAYYAGHVLGAAMFYVRVGDQSVVYTGDYNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +HS + +GG+VLIP FALGRA
Sbjct: 185 HLGAAWIEKLRPDVLITESTYATTIRDSKRWRERDFLKRVHSCVEKGGKVLIPVFALGRA 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +PIY+++ L +K Y+ +I NE+I+ F + N F FK
Sbjct: 245 QELCILLETYWERMN--LTVPIYFSAGLTEKATNYYKLFIHWTNEKIKRTFVHRNMFDFK 302
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HIS +D GP V+ A+PG L +G S ++F W ++KN +IPGY V GT+
Sbjct: 303 HISTFER--GLADQPGPMVLFATPGMLHAGTSLEVFKKWAPNEKNLVIIPGYCVVGTVGN 360
Query: 378 TIISEPK---EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ + K +V L + + + +V +SFSAHAD +K P N+ILVHGE
Sbjct: 361 KLAAGRKGSFKVDLDSRTSLEVRCKVKNLSFSAHADAKGIMQLIKMSQPANVILVHGEKG 420
Query: 435 EMGRLKTKLMTELA-DC----NTKIITPKNCQSV 463
+M LK +++ E C N +T K +SV
Sbjct: 421 KMQSLKQRVIREFEIPCFDPPNGSTVTIKTARSV 454
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 195/500 (39%), Positives = 273/500 (54%), Gaps = 21/500 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID ++
Sbjct: 6 ITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVVAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ P+Y+A L +K Y+ +I N++IR F N F
Sbjct: 246 QELCILLETYW----ERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT+
Sbjct: 302 FKHIKPFDK-GYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 HKILGGAKKVEFENRQVVEVKMSVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEAVKM 420
Query: 437 GRLKTKLMTEL-ADC------NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGET 489
LK K+ E DC T +IT VE + K P+
Sbjct: 421 EFLKDKIREEFHIDCFTPANGETCVITTPIKIPVEASLSILKDEAKKYNAEPPDPKRRRI 480
Query: 490 VSGILVKKGFTYQIMAPDDL 509
V G+LV K +M+ D++
Sbjct: 481 VHGLLVMKDNKISLMSIDEI 500
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 177/436 (40%), Positives = 258/436 (59%), Gaps = 18/436 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ ITPLGAG +VGRSC+ +S GK I+ DCG+H Y P F I+ +D
Sbjct: 3 EITITPLGAGQDVGRSCILISMGGKNIMLDCGMHMGYQDERRFPDFSYINNGGPLDDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LP+ E + G ++MTH TKAI +LL D+ K+ E F
Sbjct: 63 CVIISHFHLDHCGALPFMSEMIGYTGPIYMTHPTKAICPILLEDFRKICVDKKGEQNFFS 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
+ I M K+ + H+T++V+ ++ Y AGHVLGAAMF + + + ++YTGDY+
Sbjct: 123 QGMIRDCMKKVIPCNLHETIKVDSELEIKAYYAGHVLGAAMFHIKVGHISIVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F + +H I +GG+VLIPAFAL
Sbjct: 183 PDRHLGAAWIDRCRPDLLITESTYATTIRDSKRCRERDFLNKVHDCIERGGKVLIPAFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ YW E N+ PIY+A+ L +K Y+ +I N++IRN F + N
Sbjct: 243 GRAQELCILLETYW----ERMNLKCPIYFAAGLTEKATNYYKMFITWTNQKIRNTFVDHN 298
Query: 314 PFKFKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
F FKHI P + ID + GP VV A+PG L +GLS Q+F W ++N ++PGY V
Sbjct: 299 MFDFKHIKPFDRAYID---NPGPMVVFATPGMLHAGLSLQIFKKWAPFEENMVIMPGYCV 355
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
GT+ I++ + V + G + + V Y+SFSAHAD +++ P N++LVHG
Sbjct: 356 SGTVGAKILNGARRVEIEKGNFIDVKLSVEYLSFSAHADAKGIMQLIRQCEPKNVLLVHG 415
Query: 432 ESHEMGRLKTKLMTEL 447
E +M LK K+ E
Sbjct: 416 EGDKMKFLKGKIEEEF 431
>gi|340545979|gb|AEK51788.1| cleavage and polyadenylation specific factor 3 [Heteronotia binoei]
gi|402696941|gb|AFQ90659.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Malaclemys terrapin]
gi|402696943|gb|AFQ90660.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Testudo hermanni]
Length = 220
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 152/218 (69%), Positives = 180/218 (82%)
Query: 157 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIE 216
EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIE
Sbjct: 3 EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 62
Query: 217 STYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFH 276
STYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H
Sbjct: 63 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELH 122
Query: 277 NIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSV 336
+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSV
Sbjct: 123 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSV 182
Query: 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
VMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGT
Sbjct: 183 VMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGT 220
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 178/452 (39%), Positives = 267/452 (59%), Gaps = 15/452 (3%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF----DEIDPSAI 76
D +++ PLGAG +VGRSC+ + G+TI+FDCG+H Y+ P F D S I
Sbjct: 35 ADGIVVLPLGAGQDVGRSCIIVEMNGRTIMFDCGMHMGYNDDRRFPDFSVLADGDLTSRI 94
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
DV++I+HFHLDH +LP+F E + ++MT+ TKAI LLL DY K+S + E F
Sbjct: 95 DVVIISHFHLDHCGALPFFSEMCGYDKPIYMTYPTKAICPLLLEDYRKISVERKGERNFF 154
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
Q I M K++ +D HQ+V + G I+ Y AGHVLGAAMF V + V+YTGDY+
Sbjct: 155 TSQMIKDCMSKVQPVDLHQSVTLPGDIEIKAYYAGHVLGAAMFHVRVGDKSVVYTGDYNM 214
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL A + PD I ESTY + + RE+ F +H + GG+VLIP FA
Sbjct: 215 TPDRHLGTAWIDFCQPDAIITESTYATTIRDSKRCRERDFLTKVHRCVKNGGKVLIPVFA 274
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L+ YW + + PIY+++ L +K Y+ +++ N++I++ F + N
Sbjct: 275 LGRAQELCILLETYWERYKL--DTPIYFSTGLTEKANEYYRLFVMYTNQKIKDTFVDRNL 332
Query: 315 FKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F FKHI + ++D GP V+ A+PG L +G++ ++F W D +N ++PGY V G
Sbjct: 333 FDFKHIRAFDR--SYADQPGPQVLFATPGMLHAGVALEVFAKWAGDPRNMVILPGYCVAG 390
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ +I+ KE+ + + + +QV Y+SFSAHAD T +K+ N++LVHGE
Sbjct: 391 TVGAQVIAGKKEIRVGQQMVN-VRLQVEYLSFSAHADAKGIMTLIKQCGAKNVVLVHGEK 449
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L ++ EL +T PKN + +++
Sbjct: 450 KKMEFLADRVRREL---DTPCFFPKNGERLQI 478
>gi|47213099|emb|CAF89519.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 158/262 (60%), Positives = 196/262 (74%), Gaps = 3/262 (1%)
Query: 216 ESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEF 275
ESTYG +H+ R RE RF + +H +++ GR LIP FALGRAQELLLILDEYW NHPE
Sbjct: 260 ESTYGTHIHEKREEREARFCNTVHDIVNREGRCLIPVFALGRAQELLLILDEYWQNHPEL 319
Query: 276 HNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPS 335
H+IPIYYAS LA+KCMAVYQTYI +MN++IR +NPF FKHIS L S+D F D+GPS
Sbjct: 320 HDIPIYYASSLARKCMAVYQTYINAMNDKIRKAININNPFVFKHISNLKSMDHFDDIGPS 379
Query: 336 VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP 395
VVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP E+T M+G
Sbjct: 380 VVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPDEITTMSGQKLA 439
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNT 452
L M V YISFSAH DY QTS F++ L PP++ILVHGE +EM RLK L+ E D +
Sbjct: 440 LKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHI 499
Query: 453 KIITPKNCQSVEMYFNSEKMAK 474
++ P+N ++V +YF EK+AK
Sbjct: 500 EVHNPRNTEAVTLYFRGEKLAK 521
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/108 (67%), Positives = 89/108 (82%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 3 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKV
Sbjct: 63 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 110
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPQSVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RVSCYMPANGETVAL 446
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/508 (38%), Positives = 279/508 (54%), Gaps = 29/508 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID ++
Sbjct: 6 ITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMTEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT+
Sbjct: 302 FKHIKPFDK-GYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 HKILGGAKKVEFENRQVVEVKMSVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEAVKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS----VEMYFNSEKMAKTIGRLAEK------TPEV 486
LK K+ E + + TP N ++ + E + A+K P+
Sbjct: 421 EFLKEKIKEEF---HIECYTPANGETCVINTPIKIPVEASTTILKEEAKKYNAEPPDPKR 477
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQ 514
+ G+L+ K +M+ D+ IFS+
Sbjct: 478 RRVIHGLLIMKDNKISLMSIDE--IFSE 503
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 185/448 (41%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPL--NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P N ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKNYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAG 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIKDEF---NLETYMPANGET 443
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQGNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIKDEF---NLETYMPANGET 443
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 340 bits (871), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 4 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 63
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 64 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 123
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 124 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 183
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 184 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 243
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 244 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 301
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 302 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 359
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 360 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 419
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 420 KMEFLRQKIEQEF---RVSCYMPANGETVTL 447
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVEHGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIRDEF---NLETYMPANGET 443
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 265/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH+T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVNCYMPANGETVTL 446
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF +++ V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWINVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDNARPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIKDEF---NLETYMPANGET 443
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAG 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIKDEF---NLETYMPANGET 443
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 259/448 (57%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYAGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L+ K+ E N + P N ++
Sbjct: 419 KMKFLRAKIRDEF---NLETYMPANGET 443
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 182/446 (40%), Positives = 258/446 (57%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPDGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW + PIY+A L +K Y+ +I N++IR F + N F FK
Sbjct: 246 QELCILLETYWDRMNLKY--PIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFDFK 303
Query: 319 HISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
HI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT+
Sbjct: 304 HIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 NKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAEKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
L++K+ E N + P N ++
Sbjct: 421 KFLRSKIKDEF---NLETYMPANGET 443
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ ++ GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIKDEF---NLETYMPANGET 443
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 184/448 (41%), Positives = 259/448 (57%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +S+GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVSKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P +++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKHVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L+ K+ E N + P N ++
Sbjct: 419 KMKFLRAKIRDEF---NLETYMPANGET 443
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 182/446 (40%), Positives = 255/446 (57%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID ++
Sbjct: 6 ITPLGAGQDVGRSCILLSMAGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTPQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ P+Y+A L +K Y+ +I N++IR F N F
Sbjct: 246 QELCILLETYW----ERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT+
Sbjct: 302 FKHIKPFDK-GYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 HKILGGAKKVEFENRQVVDVKMSVEYMSFSAHADAKGIMQLIQFCEPRNVMLVHGEAVKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E + TP N ++
Sbjct: 421 EFLKEKIREEF---KIECYTPANGET 443
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 192/521 (36%), Positives = 279/521 (53%), Gaps = 25/521 (4%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----I 76
+++I+TPLGAG +VGRSC+ ++ + I+ DCG+H Y P F I I
Sbjct: 5 NRIIVTPLGAGQDVGRSCILITIGNRNIMLDCGMHMGYQDERKFPDFSYITSDGNITDII 64
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVK-VSKVSVEDMLF 135
D ++I+HFHLDH +L Y E + G ++MTH TKAI +LL D K + + E F
Sbjct: 65 DCVIISHFHLDHCGALSYLTEHLGYHGPIYMTHPTKAIAPILLEDMRKHLVEYEEEAKYF 124
Query: 136 DEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
I M K+ ++ H+ V V + I+ Y AGHVLGAAMF + + V+YTGD+S
Sbjct: 125 TSSAIRDCMKKVTAVNLHEVVTVKDDIELKAYYAGHVLGAAMFYIKVGNDSVVYTGDFSM 184
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA + + P + I ESTY + + RE+ F +H I +GG+VLIP FA
Sbjct: 185 TPDRHLGAAWIDKCRPTLLITESTYATTIRDSKRCRERDFLKNVHECIDRGGKVLIPIFA 244
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL +++D YW +P+Y+A+ L +K + Y+ +I N+++R F N
Sbjct: 245 LGRAQELCILIDTYWDRMGL--KVPVYFAAGLTEKANSYYKMFITWTNQKVRQTFVQRNM 302
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F FKHI P + + GP VV A+PG L +GLS +F W D+KN ++PGY V GT
Sbjct: 303 FDFKHIKPFDKT-YMHNPGPMVVFATPGMLHAGLSLNIFKKWAPDEKNMLIVPGYCVSGT 361
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ ++S K++ + M V Y+SFSAHAD +K P N++LVHGE
Sbjct: 362 VGNKVLSGSKKIEAEPNKFIDVKMSVEYLSFSAHADGKGIIQLIKNCEPQNVLLVHGEEE 421
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM------YFN-SEKMAKTIGRLAEKTPEVG 487
+M L+ K+M E N P N ++VE+ FN S K+ K I L +++ +G
Sbjct: 422 KMKFLRAKIMQEF---NINCYMPANGETVEIETANIHTFNMSTKLVKEI--LDDQSNNLG 476
Query: 488 ---ETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
V G + K + + A F +L T R T
Sbjct: 477 NGKRLVHGAFLLKNGSSNLNAMSVKDTFKELDIQRHTLRFT 517
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 182/446 (40%), Positives = 255/446 (57%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P ID ++
Sbjct: 6 ITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTPQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCKPDLLITESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ P+Y+A L +K Y+ +I N++IR F N F
Sbjct: 246 QELCILLETYW----ERMNLKYPVYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT+
Sbjct: 302 FKHIKPFDK-GYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+ +M
Sbjct: 361 HKILGGAKKVEFENRQVVEVKMSVEYMSFSAHADAKGIMQLIQFCEPRNVMLVHGEAVKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E + TP N ++
Sbjct: 421 EFLKEKIREEF---RIECYTPANGET 443
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVNCYMPANGETVTL 446
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHEILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 260/448 (58%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H +++GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVAKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 359 VGNKILGGAKKVEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQNCEPKNVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L++K+ E N + P N ++
Sbjct: 419 KMKFLRSKIKDEF---NLETYMPANGET 443
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 262/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVADHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 179/446 (40%), Positives = 263/446 (58%), Gaps = 18/446 (4%)
Query: 12 RRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
R AP R ++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I
Sbjct: 3 RGSAP--RSMPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYI 60
Query: 72 DPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS 126
+ +D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++
Sbjct: 61 TRNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIA 120
Query: 127 -KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGV 184
E F Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + +
Sbjct: 121 VDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSE 180
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
V+YTGDY+ DRHL AA + + P++ I ESTY + + RE+ F +H + +
Sbjct: 181 SVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVER 240
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMN 302
GG+VLIP FALGRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N
Sbjct: 241 GGKVLIPVFALGRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTN 296
Query: 303 ERIRNQFANSNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
++IR F N F+FKHI + F+D GP VV A+PG L +G S Q+F W ++K
Sbjct: 297 QKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEK 354
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL 421
N ++PGY V+GT+ I+S +++ + + MQV Y+SFSAHAD + +
Sbjct: 355 NMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQA 414
Query: 422 MPPNIILVHGESHEMGRLKTKLMTEL 447
P +++LVHGE+ +M LK K+ EL
Sbjct: 415 EPESVLLVHGEAKKMEFLKQKIEQEL 440
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V + ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVHDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 190/501 (37%), Positives = 283/501 (56%), Gaps = 28/501 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I + +D ++
Sbjct: 6 VTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PDI I ESTY + + RE+ F +H T+ +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N F+
Sbjct: 246 QELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFE 301
Query: 317 FKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHI + ++D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+
Sbjct: 302 FKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTV 359
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I++ K++ + T + +QV Y+SFSAHAD ++ P N++LVHGE+ +
Sbjct: 360 GHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKK 419
Query: 436 MGRLKTKLMTEL-------ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA--EKTPEV 486
M LK K+ E A+ T I V++ N K +G K P
Sbjct: 420 MEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDISLNLLKREMALGGPLPDAKRP-- 477
Query: 487 GETVSGILVKKGFTYQIMAPD 507
T+ G L+ K + ++++P+
Sbjct: 478 -RTMHGTLIMKDNSLRLVSPE 497
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 185/472 (39%), Positives = 275/472 (58%), Gaps = 23/472 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVYIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PDI I ESTY + + RE+ F +H +I +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ + +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGMTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + ++D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I++ +++ + T + +QV Y+SFSAHAD ++ P N++LVHGE
Sbjct: 357 GTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGE 416
Query: 433 SHEMGRLKTKLMTELA-DC----NTKIITPKNCQS--VEMYFNSEKMAKTIG 477
+ +M LK K+ E + DC N + +T K S V+M N K +G
Sbjct: 417 AAKMEFLKGKIEQEFSIDCYMPANGETVTVKTNPSVPVDMSVNLLKREMALG 468
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 260/451 (57%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKXGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 189/502 (37%), Positives = 286/502 (56%), Gaps = 24/502 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVIPLNLHQTVQVDDELEIKAYYAGHVLGAAMVHIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PDI I ESTY + + RE+ F +H +I +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + ++D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I++ +++ + T + +QV Y+SFSAHAD ++ P N++LVHGE
Sbjct: 357 GTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGE 416
Query: 433 SHEMGRLKTKLMTELA-DC------NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPE 485
+ +M LK K+ E + DC T +T V++ N K +G P+
Sbjct: 417 AVKMEFLKGKIEQEFSIDCYMPANGETTTVTTNPSVPVDISLNLLKREMALGG-PLPDPK 475
Query: 486 VGETVSGILVKKGFTYQIMAPD 507
T+ G L+ K + ++++ +
Sbjct: 476 KPRTMHGTLIMKENSLKLVSSE 497
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 177/434 (40%), Positives = 251/434 (57%), Gaps = 14/434 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAID 77
++ ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID
Sbjct: 3 EIKITPLGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I + K+ + HQ+V V N ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCIKKVTAVTLHQSVMVDNELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H + +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVEKGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ YW E N+ P+Y+A L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETYW----ERMNLKYPVYFALGLTEKANNYYKMFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F FKHI P + + G VV A+PG L +GLS +F W ++N ++PG+ V+G
Sbjct: 299 MFDFKHIKPFDK-SYIDNPGAMVVFATPGMLHAGLSLNIFKKWAPYEQNMLIMPGFCVQG 357
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I++ K++ N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 358 TVGHKILNGAKKIEFENRQVVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEA 417
Query: 434 HEMGRLKTKLMTEL 447
+M LK K+ E
Sbjct: 418 QKMEFLKDKIEKEF 431
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 267/456 (58%), Gaps = 19/456 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F + + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LP+ E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPFMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PDI I ESTY + + RE+ F +H +I +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHESIERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + ++D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I++ +++ + T + +QV Y+SFSAHAD ++ P N++LVHGE
Sbjct: 357 GTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN 468
+ +M LK K+ E N P N ++V + N
Sbjct: 417 AAKMEFLKGKIEQEF---NIDCYMPANGETVTVTTN 449
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/451 (39%), Positives = 260/451 (57%), Gaps = 19/451 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSC+ +S G+ ++ DCG+H YS P F I+ +D
Sbjct: 3 EIKVVPLGAGRDVGRSCILVSIGGRNVMLDCGMHMGYSDERRFPDFSFINGGGSLTEFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFD 136
++ITHFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV ++ + F
Sbjct: 63 CVIITHFHLDHCGSLPHMSEVVGYDGPIYMTYPTKAIAPVLLEDYRKVQTEFKGDKNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ ++ H+ ++V N + + AGHVLGAAMF + + VLYTGD++
Sbjct: 123 SQMIKNCMKKVIAINIHEKIDVDNELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTT 182
Query: 196 EDRHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA + P PD+ I ESTY + + RE+ F +H T+S GG+VLIP FA
Sbjct: 183 PDRHLGAARVEPGLKPDLLISESTYATTIRDSKRARERDFLKKVHDTVSNGGKVLIPVFA 242
Query: 255 LGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
LGRAQEL ++L+ YW E N+ PI+++ LA+K Y+ +I NE+I+ F
Sbjct: 243 LGRAQELCILLESYW----ERMNLKYPIFFSQGLAEKANQYYRLFISWTNEKIKRTFVER 298
Query: 313 NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
N F FKHI P GP V+ ++PG L G S ++F WCSD+KN ++PG+ V
Sbjct: 299 NMFDFKHIRPFEQ-SYIESPGPMVLFSTPGMLHGGQSLRVFTKWCSDEKNLIIMPGFCVA 357
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
T+ +IS K++ + G +N+ V Y+SFSAHAD +++ P N++ VHGE
Sbjct: 358 NTVGAKVISGMKKIEIA-GRVREINLGVEYMSFSAHADAKGIMQLIRDCQPRNVMFVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
+M LK K+ E N K+ P N ++V
Sbjct: 417 DAKMEFLKEKVEKEF---NLKVFKPANGETV 444
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 177/453 (39%), Positives = 265/453 (58%), Gaps = 19/453 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIRVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDRCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ +M LK K+ E P N ++V +
Sbjct: 417 AKKMEFLKQKIEQEF---RVSCYMPANGETVTL 446
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/452 (39%), Positives = 262/452 (57%), Gaps = 21/452 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I PLGAG +VGRSC+ +S GK ++ DCG+H YS P F I +D
Sbjct: 58 EIKIVPLGAGRDVGRSCILVSIGGKNVMLDCGMHMGYSDERRFPDFSFISGGGSLTEFLD 117
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFD 136
++ITHFHLDH SLP+ E + G ++MT+ TKAI +LL DY K+ ++ + F
Sbjct: 118 CVIITHFHLDHCGSLPHMSEVIGYDGPIYMTYPTKAIAPVLLEDYRKIQTEFKGDKNFFT 177
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ ++ H+ +++ N + + AGHVLGAAMF + + VLYTGD++
Sbjct: 178 SQMIKNCMKKVIAINIHEKIDIDNELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTT 237
Query: 196 EDRHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA + P PD+ I ESTY + + RE+ F +H T+S GG+VLIP FA
Sbjct: 238 PDRHLGAARVEPGLKPDLLISESTYATTIRDSKRARERDFLKKVHDTVSNGGKVLIPVFA 297
Query: 255 LGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
LGRAQEL ++L+ YW E N+ PI+++ LA+K Y+ +I NE+I+ F
Sbjct: 298 LGRAQELCILLESYW----ERMNLKYPIFFSQGLAEKANQYYRLFISWTNEKIKRTFVER 353
Query: 313 NPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
N F FKHI P ++D GP V+ ++PG L G S ++F WCSD+KN ++PG+ V
Sbjct: 354 NMFDFKHIRPFEQ--SYTDSPGPMVLFSTPGMLHGGQSLRVFTKWCSDEKNLIIMPGFCV 411
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
T+ +IS K++ + G +N+ V Y+SFSAHAD +++ P N++ VHG
Sbjct: 412 ANTVGAKVISGMKKIEIA-GRMREINLGVEYMSFSAHADAKGIMQLIRDCQPKNVMFVHG 470
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
E +M LK K+ E N K+ P N +++
Sbjct: 471 EDAKMEFLKEKVEKEF---NLKVFKPANGETI 499
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 177/453 (39%), Positives = 264/453 (58%), Gaps = 19/453 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQVLEVRMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ +M LK K+ E P N ++V +
Sbjct: 417 AKKMEFLKQKIEQEF---RVSCYMPANGETVTL 446
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 335 bits (859), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/451 (38%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FTDNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M K K+ EL P N ++V +
Sbjct: 419 KMEFQKQKIEQEL---RVSCYMPANGETVTL 446
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 176/452 (38%), Positives = 263/452 (58%), Gaps = 16/452 (3%)
Query: 23 QLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----I 76
++ +TPL GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +
Sbjct: 3 EIRVTPLVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFL 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLF 135
D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 DCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFF 122
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 TSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNM 182
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FA
Sbjct: 183 TPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFA 242
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 LGRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNM 300
Query: 315 FKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+G
Sbjct: 301 FEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 358
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEA 418
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KKMEFLKQKIEQEF---RVSCYMPANGETVTL 447
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 175/451 (38%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTSVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 264/453 (58%), Gaps = 19/453 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H + +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ +M LK K+ E P N ++V +
Sbjct: 417 AKKMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 180/450 (40%), Positives = 256/450 (56%), Gaps = 21/450 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID ++
Sbjct: 6 VTPLGAGQDVGRSCILVSVGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + ++YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ P+Y+A L +K Y+ +I N++I+ F N F
Sbjct: 246 QELCILLETYW----ERMNLKAPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI P + + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 302 FKHIKPFDK-SYIDNPGAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ K + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 361 HKVLNGAKRIEFENRQIVEVKMTVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKM 420
Query: 437 GRLKTKLMTEL-------ADCNTKIITPKN 459
LK K+ E A+ T IIT K+
Sbjct: 421 EYLKDKIKQEFGINCYNPANGETCIITTKS 450
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 258/448 (57%), Gaps = 21/448 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H Y+ P F I P S ID ++
Sbjct: 6 ITPLGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H + +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECVLKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E N+ PIY+A L +K Y+ +I N++IR F + N F
Sbjct: 246 QELCILLETYW----ERMNLKYPIYFALGLTEKANTYYKMFITWTNQKIRKTFVHRNMFD 301
Query: 317 FKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PGY V+GT
Sbjct: 302 FKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+ K+V N + M V Y+SFSAHAD ++ P +++LVHGE+
Sbjct: 359 VGNKILGGAKKVECENRQIIEVKMAVEYMSFSAHADAKGIMQLIQNCEPKHVMLVHGEAE 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQS 462
+M L+ K+ E N + P N ++
Sbjct: 419 KMKFLRAKIRDEF---NLETYMPANGET 443
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 264/453 (58%), Gaps = 19/453 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H + +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDRCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ +M LK K+ E P N ++V +
Sbjct: 417 AKKMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 175/451 (38%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP AL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVXAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 179/432 (41%), Positives = 252/432 (58%), Gaps = 15/432 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSC+ ++ GK I+FDCG+H Y+ P F I +D ++
Sbjct: 6 VIPLGAGQDVGRSCILVTLGGKNIMFDCGMHMGYNDDRKFPDFTYITDKGGLNEYLDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD- 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ D F D
Sbjct: 66 ISHFHLDHCGALPYMTEVIGYDGPIYMTHPTKAICPILLEDYRKINVERRGDQNFFTSDM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I R M K+ + HQTV+V+ ++ + AGHVLGAAMF+V + VLYTGDY+ DR
Sbjct: 126 IYRCMTKVRCVYIHQTVKVDDELEIQAFYAGHVLGAAMFLVRVGTNSVLYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F + IH+ + GG+VLIP FALGRA
Sbjct: 186 HLGAAWVSRCRPDLLITESTYATTIRDSKRTREREFLEKIHARVEAGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ YW E NI PIY++ +A+K Y+ +I N++I+ F N F
Sbjct: 246 QELCILLETYW----ERMNISVPIYFSMGMAEKANEYYKLFISWTNQKIKETFVKRNMFD 301
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHI PL + GP VV A+PG L +G S +F W SD++N VIPGY V GT+
Sbjct: 302 FKHIKPLGQ-GTVDNPGPMVVFATPGMLHAGQSLHIFRKWASDERNMVVIPGYCVAGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
I++ + + + + M V Y+SFSAHAD + P +++LVHGE+ +M
Sbjct: 361 YKILNGVRRLEF-DKQVLEVKMAVEYLSFSAHADARGIMQLISHCQPKHVMLVHGEAIKM 419
Query: 437 GRLKTKLMTELA 448
LK+K+ E
Sbjct: 420 DFLKSKIEQEFG 431
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 177/451 (39%), Positives = 259/451 (57%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKAVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ L + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLELEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RLSCYMPANGETVTL 446
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 259/451 (57%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 260/446 (58%), Gaps = 19/446 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D ++I+HF
Sbjct: 10 GAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISHF 69
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F Q I
Sbjct: 70 HLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKDC 129
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + +YTGDY+ DRHL A
Sbjct: 130 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMTPDRHLGA 189
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 190 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 249
Query: 263 LILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 250 ILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI 305
Query: 321 SPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I
Sbjct: 306 KAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKI 363
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE+ +M L
Sbjct: 364 LSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLVRQAEPDNVLLVHGEAKKMEFL 423
Query: 440 KTKLMTELADCNTKIITPKNCQSVEM 465
K K+ E + P N ++V +
Sbjct: 424 KQKIEQEF---HVNCYMPANGETVTL 446
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 253/445 (56%), Gaps = 16/445 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA----IDVLLI 81
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I A ID ++I
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYISEGAATDHIDCVII 65
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDI 140
+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q I
Sbjct: 66 SHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQMI 125
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ K+ + HQ+V V+ ++ Y AGHVLGAAMF V + ++YTGDY+ DRH
Sbjct: 126 KDCIKKVIAVTLHQSVMVDPDLEIKAYYAGHVLGAAMFWVRVGSQSIVYTGDYNMTPDRH 185
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRAQ
Sbjct: 186 LGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRAQ 245
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
EL ++L+ YW +P+Y+A L +K Y+ +I N++I+ F N F FKH
Sbjct: 246 ELCILLETYWERMN--LKVPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFDFKH 303
Query: 320 ISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
I P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 304 IKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNESNMVIMPGFCVQGTVGH 360
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
+++ + + N + M V Y+SFSAHAD ++ P NIILVHGE +M
Sbjct: 361 KVLNGTRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNIILVHGEFAKME 420
Query: 438 RLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E T P N ++
Sbjct: 421 YLKEKIKQEFG---TNCYNPANGET 442
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 253/446 (56%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID ++
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + ++YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +P+Y+A L +K Y+ +I N++I+ F N F FK
Sbjct: 246 QELCILLETYWERMN--LKVPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFDFK 303
Query: 319 HISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
HI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 304 HIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ + + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 361 HKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E T P N ++
Sbjct: 421 EFLKEKIKQEFG---TNCYNPANGET 443
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/451 (38%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G +++TH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYVTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I STY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITGSTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 253/446 (56%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID ++
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPTTNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + ++YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +P+Y+A L +K Y+ +I N++I+ F N F FK
Sbjct: 246 QELCILLETYWERMN--LKVPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFDFK 303
Query: 319 HISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
HI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 304 HIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ + + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 361 HKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E T P N ++
Sbjct: 421 EFLKEKIKQEFG---TNCYNPANGET 443
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 253/446 (56%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID ++
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + ++YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +P+Y+A L +K Y+ +I N++I+ F N F FK
Sbjct: 246 QELCILLETYWERMN--LKVPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFDFK 303
Query: 319 HISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
HI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 304 HIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ + + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 361 HKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E T P N ++
Sbjct: 421 EFLKEKIKQEFG---TNCYNPANGET 443
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 176/446 (39%), Positives = 253/446 (56%), Gaps = 17/446 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID ++
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + ++YTGDY+ DR
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDRGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +P+Y+A L +K Y+ +I N++I+ F N F FK
Sbjct: 246 QELCILLETYWERMN--LKVPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFDFK 303
Query: 319 HISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
HI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 304 HIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ + + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 361 HKVLNGSRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKM 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQS 462
LK K+ E T P N ++
Sbjct: 421 EFLKEKIKQEFG---TNCYNPANGET 443
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/465 (38%), Positives = 266/465 (57%), Gaps = 24/465 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
I PLGAG +VGRSC+ ++ +G+TI+ DCG+H Y+ P F + + ID ++
Sbjct: 3 IIPLGAGQDVGRSCIIVNIEGRTIMLDCGMHMGYNDQRRFPDFSALSKTGDFNKLIDCII 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLFDEQD 139
I+HFHLDH +LP+F E + G ++MT TKA+ +LL D+ K+S D F QD
Sbjct: 63 ISHFHLDHTGALPFFTEICKYDGPIYMTKPTKAVIPILLEDFRKISAPKSSDGKFFSYQD 122
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWC-YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I + KI ++F++T + + F Y AGHV+GAAMF V + V+YTGDY+ DR
Sbjct: 123 IQNCLKKIITINFNETYKHDENFFITPYYAGHVIGAAMFHVQVGSRSVVYTGDYNMTPDR 182
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA +P PD+ I ESTYG R +E+ F + +S GG+VLIP FALGRA
Sbjct: 183 HLGAASIPCLRPDLLITESTYGSITRDCRKSKEREFFKAVLDCVSNGGKVLIPIFALGRA 242
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL L+LD +W +PIY++S L +K +Y+ ++ NE I+ N N F FK
Sbjct: 243 QELCLLLDSHWERMQL--KVPIYFSSGLTEKANNIYKQFLSYTNETIKKNAFNHNVFDFK 300
Query: 319 HISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
H + F D+ P V+ ASPG L SG+S ++F WC+D KN +IPGY V+GT+
Sbjct: 301 HTTTFQK--HFLDLNIPMVLFASPGMLHSGMSLKVFKEWCTDPKNLVIIPGYCVKGTVGD 358
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
+++ KE+ ++ G + +QV ++FSAHAD +K P N++LVHGE +
Sbjct: 359 KVLNGNKEIEIL-GELKEIKIQVKNLAFSAHADAQGILNLIKMCQPKNVMLVHGEKSRIS 417
Query: 438 RLKTKLMTELADCNTKIITPKN--CQS------VEMYFNSEKMAK 474
LK + + N + P N C + +++ FN++K+ K
Sbjct: 418 LLKKSIEKKF---NIPVFKPANGTCINIPKQDLIKLRFNNDKLKK 459
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 173/449 (38%), Positives = 261/449 (58%), Gaps = 17/449 (3%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDV 78
L +TPLGAG +VGRSC+ +S GK ++ DCG+H Y P F I +
Sbjct: 4 LKVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGYQDERRFPDFSYISGGVPLTDYLHC 63
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDE 137
++I+HFHLDH +LPY E ++G ++MT+ TKAI +LL D+ KV ++ E F
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYEGPIYMTYPTKAIAPVLLEDFRKVQTEYRGETNFFTS 123
Query: 138 QDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
Q I M K+ ++ ++ V V+ + + AGHVLGAAMF++ + V+YTGD++
Sbjct: 124 QMIKTCMRKVTPVNVNEEVNVDDKLSIQAFYAGHVLGAAMFLIKVGSESVIYTGDFNTTA 183
Query: 197 DRHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + P PD+ I E+TY + + RE+ F +H ++ GG+VLIP FAL
Sbjct: 184 DRHLGAAHVEPGLKPDLLISETTYATTIRDSKRARERDFLKKVHDCVANGGKVLIPVFAL 243
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ YW +PI+++ LA+K Y+ +I NE+I+ F + N F
Sbjct: 244 GRAQELCILLESYWERMD--LTVPIFFSHGLAEKATQYYRLFISWTNEKIKRTFVHRNMF 301
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FKHI P + FSD GP V+ ++PG L G S ++F WCSD+KN ++PG+ V GT
Sbjct: 302 DFKHIRPFDQ--SFSDSPGPMVLFSTPGMLHGGQSLRVFKKWCSDEKNMVIMPGFCVAGT 359
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ +I K+V + +G +N+ V Y+SFSAHAD +++ P N++ VHGE+
Sbjct: 360 IGAKVIGGAKKVEI-DGKMLDINLGVEYMSFSAHADAKGIMQLIRQCEPKNVMFVHGENA 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSV 463
+M LK K+ E ++ P N +S+
Sbjct: 419 KMEFLKEKVEKEFG---LRVYKPANGESI 444
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 175/445 (39%), Positives = 260/445 (58%), Gaps = 17/445 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 196 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 255
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 256 ILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 313
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 314 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 371
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 372 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 431
Query: 442 KLMTEL-ADCNTKIITPKNCQSVEM 465
K+ EL DC P N ++V +
Sbjct: 432 KIEQELRVDC----YMPANGETVTL 452
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 332 bits (850), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 173/452 (38%), Positives = 260/452 (57%), Gaps = 16/452 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPTLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F+FKHI + + VV A+PG L +G S Q+F W ++KN ++PGY V+G
Sbjct: 299 MFEFKHIKAFDRAXXXAHPCAMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 358
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 TVGHKILSGQRKLEMEGRQVLEVRMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 418
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KKMEFLKQKIEQEF---RVSCYMPANGETVTL 447
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 184/491 (37%), Positives = 270/491 (54%), Gaps = 34/491 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA------IDVL 79
I PLGAG +VGRSC+ +S GK I+FDCG+H Y+ P F I + I+ +
Sbjct: 6 IVPLGAGQDVGRSCILVSMGGKNIMFDCGMHMGYNDERRFPDFTYITDTGQTLHDYINCV 65
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 138
+++HFHLDH +LPYF E + G ++MTH TKAI +LL D+ +V E F Q
Sbjct: 66 ILSHFHLDHCGALPYFTEMCGYNGPIYMTHPTKAICPVLLEDFRRVCVDKKGEQNFFTSQ 125
Query: 139 DINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
I M K+ ++ HQ V+V+ ++ Y AGHVLGAAMF V + V+YTGDY+ D
Sbjct: 126 MIKDCMRKVITVNLHQCVKVDDQLEIKAYYAGHVLGAAMFHVRVGHQSVVYTGDYNMTPD 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL +A + + PD+ I ESTY + + RE+ F +H + + G+VLIP FALGR
Sbjct: 186 RHLGSAWIDRCRPDLLITESTYATTIRDSKRCRERDFLKKLHECLERDGKVLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
AQEL ++L+ YW E N+ PIY+++ L +K Y+ +I N++I+N F + N F
Sbjct: 246 AQELCILLESYW----ERMNLKYPIYFSTGLTEKANHYYKLFISWTNQKIKNTFIHRNMF 301
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHI + GP +V A+PG L +GLS Q+F W D+KN ++PGY V GT+
Sbjct: 302 DFKHIKAFDR-SYIDQPGPMIVFATPGMLHAGLSLQIFKKWAEDEKNMLIMPGYCVPGTI 360
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
++S K++ + L + + V Y+SFSAHAD ++ P N++LVHGE+ +
Sbjct: 361 GHKVLSGTKKIEIDKKLVN-IRLSVQYMSFSAHADAKGIMQLIQLAEPKNVLLVHGEAAK 419
Query: 436 MGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILV 495
M L+ K+ E P N ++V + TP + +S +L
Sbjct: 420 MEFLRQKINEEFG---IHCYMPANGETVAI---------------ATTPSISVNMSSLLF 461
Query: 496 KKGFTYQIMAP 506
K+ I AP
Sbjct: 462 KRALEESIGAP 472
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 173/444 (38%), Positives = 258/444 (58%), Gaps = 15/444 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 196 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 255
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 256 ILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 313
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 314 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 371
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 372 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 431
Query: 442 KLMTELADCNTKIITPKNCQSVEM 465
K+ EL P N ++V +
Sbjct: 432 KIEQEL---RVNCYMPANGETVTL 452
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 174/432 (40%), Positives = 250/432 (57%), Gaps = 14/432 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSA--IDVLL 80
ITPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P+ ID ++
Sbjct: 6 ITPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVAEGPATNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF + + ++YTGDY+ DR
Sbjct: 126 IKDCMKKVVAVTLHQSVMVDPELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECIDKGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ YW +P+Y+A L +K Y+ +I N++I+ F N F+FK
Sbjct: 246 QELCILLETYWERMN--LKVPVYFALGLTEKANNYYKMFITWTNQKIKKTFVQRNMFEFK 303
Query: 319 HISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
HI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V+GT+
Sbjct: 304 HIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVG 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ + + N + M V Y+SFSAHAD ++ P N++LVHGE +M
Sbjct: 361 HKVLNGTRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKM 420
Query: 437 GRLKTKLMTELA 448
LK K+ E
Sbjct: 421 EYLKEKIKQEFG 432
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 184/496 (37%), Positives = 271/496 (54%), Gaps = 30/496 (6%)
Query: 33 NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLD 87
++VGRSC+ +S GK I+ DCG+H Y+ P F I S +D ++I+HFHLD
Sbjct: 4 SDVGRSCILVSIGGKNIMLDCGMHMGYNDERRFPDFTYITQSGTLNDHLDCVIISHFHLD 63
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS---KVSVEDMLFDEQDINRSM 144
H LPY E + G ++MTH TKAI +LL DY K++ K + F Q I M
Sbjct: 64 HCGCLPYMTEMVGYDGPIYMTHPTKAICPILLEDYRKITVDRKGESQANFFTSQMIKDCM 123
Query: 145 DKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
K+ ++ HQTV+V+ ++ Y AGHVLGAAMF++ + V+YTGDY+ DRHL AA
Sbjct: 124 KKVIPVNLHQTVQVDDELEIKAYYAGHVLGAAMFLIKVGSESVVYTGDYNMTPDRHLGAA 183
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+ + PD+ I ESTY + + RE+ F +H TI +GG+VLIP FALGRAQEL +
Sbjct: 184 WIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETIEKGGKVLIPVFALGRAQELCI 243
Query: 264 ILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
+L+ +W E NI PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 244 LLETFW----ERMNIKAPIYFSTGLTEKANNYYRLFITWTNQKIRKTFVKRNMFEFKHIK 299
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ + GP VV A+PG L +GLS Q+F W D KN ++PGY V GT+ I++
Sbjct: 300 AFDR-SYIDNPGPMVVFATPGMLHAGLSLQIFKKWAPDSKNMVIMPGYCVAGTVGHKILN 358
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ N + M V Y+SFSAHAD ++ P N++LVHGE +M L
Sbjct: 359 GIRKIEFENKKVLEVRMTVEYMSFSAHADAQGIMQLIRYCEPRNVMLVHGEEQKMDFLSK 418
Query: 442 KLMTELADCNTKIITPKNCQSVEMYFNS-----------EKMAKTIGRLAEKTPEVGETV 490
K+ E + P N ++V + N ++ A G P+ +
Sbjct: 419 KITQEFG---VQCFFPANGETVTIETNPNIPVDASLNLLKREASLTGLCRLPDPKRPRVL 475
Query: 491 SGILVKKGFTYQIMAP 506
G L+ K + ++++P
Sbjct: 476 HGALIMKENSLRLVSP 491
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 330 bits (847), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 173/444 (38%), Positives = 258/444 (58%), Gaps = 15/444 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 196 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 255
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 256 ILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 313
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 314 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 371
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 372 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 431
Query: 442 KLMTELADCNTKIITPKNCQSVEM 465
K+ EL P N ++V +
Sbjct: 432 KIEQEL---RVSCYMPANGETVTL 452
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/496 (36%), Positives = 264/496 (53%), Gaps = 20/496 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-------IDV 78
I PLGAG +VGRSC+ +S K ++FDCG+H Y P F+ I ID
Sbjct: 6 IVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHIDA 65
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLF 135
++I+HFHLDH +LPY E+ ++G ++MT TK I +LL D+ KV E F
Sbjct: 66 VIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETNFF 125
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ I M K+E++ HQ + V+ + Y AGHVLGAAMF + + VLYTGD++
Sbjct: 126 TSEMIKNCMRKVEIVGLHQVINVDDELSIKAYYAGHVLGAAMFKITVGDESVLYTGDFNM 185
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA + P + I ESTY + + RE+ F IH + GG+VLIP FA
Sbjct: 186 TPDRHLGAAWADRCKPTVLISESTYATTIRDSKRSRERDFLKKIHRCVENGGKVLIPVFA 245
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L++YW N+P+Y+ + LA+K Y+ ++ NE+I++ F N
Sbjct: 246 LGRAQELCILLEQYWDRMKL--NVPVYFTAGLAEKATNYYKLFVNWTNEKIKSSFVERNL 303
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F FK+I + GP V A+PG L +G+S ++F WC+D+KN ++PGY V GT
Sbjct: 304 FDFKYIKAFQKEIHMNQSGPQVCFATPGMLHAGMSLEIFQNWCTDEKNCIIMPGYCVAGT 363
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ ++ + NG+ ++V Y+SFSAHAD +K P N++ VHGE+
Sbjct: 364 VGHRLLHGERHFKF-NGVNVTSRIKVEYMSFSAHADAKGIMQIIKMTEPKNVMFVHGEAA 422
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGI- 493
+M L K+ D TP N ++V + + K LA K + +
Sbjct: 423 KMEFLAKKVQ---KDMGLPCFTPANGETVNISCPPQIKVKIESDLARKIMKRSLNRAAFH 479
Query: 494 --LVKKGFTYQIMAPD 507
LV G +++ PD
Sbjct: 480 AALVNDGNELELLHPD 495
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/444 (38%), Positives = 258/444 (58%), Gaps = 15/444 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 196 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 255
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 256 ILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 313
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 314 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 371
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 372 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 431
Query: 442 KLMTELADCNTKIITPKNCQSVEM 465
K+ EL P N ++V +
Sbjct: 432 KIEQEL---RVSCYMPANGETVTL 452
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 170/426 (39%), Positives = 252/426 (59%), Gaps = 12/426 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 196 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 255
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 256 ILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 313
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 314 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 371
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 372 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 431
Query: 442 KLMTEL 447
K+ EL
Sbjct: 432 KIEQEL 437
>gi|402696937|gb|AFQ90657.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Dibamus sp. JJF-2012]
Length = 220
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 148/218 (67%), Positives = 176/218 (80%)
Query: 157 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIE 216
EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIE
Sbjct: 3 EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 62
Query: 217 STYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFH 276
STYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NH H
Sbjct: 63 STYGTHIHEKREEREARFCNXVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHXXLH 122
Query: 277 NIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSV 336
+IPIYYAS LAKKCMAVYQTY+ +MN++IR +NPF KHIS L S+D F D+GPSV
Sbjct: 123 DIPIYYASSLAKKCMAVYQTYVNAMNDKIRKXXXINNPFVJKHISNLKSMDHFDDIGPSV 182
Query: 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
VMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGT
Sbjct: 183 VMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGT 220
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 186/485 (38%), Positives = 262/485 (54%), Gaps = 53/485 (10%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I +D
Sbjct: 3 QISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G V+MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
I M K+ ++ HQ V+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SAMIRDCMRKVVAVNLHQAVQVDDELEIKAYYAGHVLGAAMFRIRVGSQSVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRF-TDV----------------- 237
DRHL AA L + PD+ I ESTY + + RE+ F T V
Sbjct: 183 PDRHLGAAWLDKCRPDLLITESTYATTIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFXT 242
Query: 238 ----------------IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIY 281
+H I +GG+VLIP FALGRAQEL ++L+ YW +PIY
Sbjct: 243 TIRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNL--RVPIY 300
Query: 282 YASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS--IDDFSDVGPSVVMA 339
+A L +K Y+ +I N++IR F N F FKHI P + ID + GP VV A
Sbjct: 301 FAVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIKPFDRAFID---NPGPMVVFA 357
Query: 340 SPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ 399
+PG L +GLS Q+F W + N ++PGY V GT+ I+S ++V L N + M
Sbjct: 358 TPGMLHAGLSLQIFKKWAPFEANMVIMPGYCVAGTVGHKILSGARKVELDNRQVVEVKMS 417
Query: 400 VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-DCNTKIITPK 458
V Y+SFSAHAD +++ P N++LVHGE+ +M L+ K+ E A DC+ P
Sbjct: 418 VQYMSFSAHADAKGIMQLIQQCEPANVLLVHGEAGKMDFLRKKIRQEFAIDCS----MPA 473
Query: 459 NCQSV 463
N ++V
Sbjct: 474 NGETV 478
>gi|297739593|emb|CBI29775.3| unnamed protein product [Vitis vinifera]
Length = 184
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 156/184 (84%), Positives = 167/184 (90%)
Query: 1 MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
MAS G P SLKR D+ ++R GDQ IITPLGAGNEVGRSCVYMSYKGKTIL DCGIH AYS
Sbjct: 1 MASTGPPQSLKRSDSSLTRVGDQPIITPLGAGNEVGRSCVYMSYKGKTILIDCGIHRAYS 60
Query: 61 GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT 120
GMAALP F+EIDPS IDVLL+THFHLDHAASLPYFLEKTTF G+VFMTHA KAIYKLLL+
Sbjct: 61 GMAALPNFNEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFNGQVFMTHAMKAIYKLLLS 120
Query: 121 DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD 180
DYVKVS VSVEDML+DEQDI RSMDKIEV+DFHQT+EVNGI+FWCYT GHVL AAMFMVD
Sbjct: 121 DYVKVSIVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIQFWCYTTGHVLSAAMFMVD 180
Query: 181 IAGV 184
IAGV
Sbjct: 181 IAGV 184
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 251/427 (58%), Gaps = 11/427 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VG+SCV +S GK I+FDCG+H Y P F +I + ID +++THF
Sbjct: 6 GAGQDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHF 65
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E ++G V+MT+ TKA+ ++L DY K+ E+ F I +
Sbjct: 66 HLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLHIQQC 125
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ +D QT+ V+ + F Y AGHVLGAAMF V V+YTGDY+ DRHL A
Sbjct: 126 MKKVIAVDLRQTIRVSKDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGA 185
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A++ + PD+ I ESTY + + R +E F +V+H+ +S+GG+VLIP ALGRAQEL
Sbjct: 186 AQIDRLKPDLLITESTYATTIRESRLAKEAEFLNVVHTCVSKGGKVLIPISALGRAQELC 245
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++LDEYW +PIY+++ L + A Y+ I N+RI++ + N F FKH+ P
Sbjct: 246 ILLDEYWERMNL--KVPIYFSAGLTMQSNAYYKLLISWTNQRIKDTYVTRNAFDFKHVFP 303
Query: 323 LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS- 381
+ GP ++ A+PG L GLS ++ W ++N +IPG+ + GT+A+ + S
Sbjct: 304 FDRT-QLDGNGPCILFATPGMLTGGLSLEVLKHWAPVEQNLLIIPGFCLAGTVAQKLCSG 362
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+P V + T + Q+H ++FSAH D ++++ P N+ILVHGE +M LK
Sbjct: 363 KPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVRQVEPRNVILVHGEKLKMDVLKA 422
Query: 442 KLMTELA 448
++ EL
Sbjct: 423 RINNELG 429
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 171/425 (40%), Positives = 252/425 (59%), Gaps = 13/425 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG +VGRSCV ++ G+TI+FDCG+H ++ P F I + AID ++
Sbjct: 3 VVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKAIDCVV 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
I+HFHLDH +LPYF E + G V+MT TK + +LL D+ K+ + D +F QDI
Sbjct: 63 ISHFHLDHCGALPYFTEVCGYNGPVYMTLPTKEVCPVLLDDFRKIVE-GKGDSIFTYQDI 121
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWC--YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
M K+ ++ ++T + + F+ Y AGHVLGAAMF V + V+YTGDYS D+
Sbjct: 122 LNCMKKVTTINMNETYK-HDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTTPDK 180
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A + PD+ I ESTYG R ++E+ F + I++GGRVLIP FALGRA
Sbjct: 181 HLGPASIKCVRPDLLITESTYGSITRDCRRVKEREFLKAVSDCIARGGRVLIPIFALGRA 240
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL L+LD YW IP+Y++S L +K +Y+ +I NE ++ + N F++K
Sbjct: 241 QELCLLLDGYWERTG--LKIPVYFSSGLTEKANEIYKKFISYTNETVKRKIFERNVFEYK 298
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HI P + GP V+ ASPG L SG+S ++F WC D+KN +IPGY V GT+ +
Sbjct: 299 HIKPFQKY-YMENKGPMVLFASPGMLHSGMSLRMFKEWCEDEKNLVIIPGYCVRGTIGEK 357
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+++ K + ++ G + ++V ++FSAHAD +++ P N++LVHGE M +
Sbjct: 358 VLNGAKRLEVL-GEEKDIRLEVRNLAFSAHADAQGILNVIEQCSPRNVMLVHGERSRMKQ 416
Query: 439 LKTKL 443
LK +
Sbjct: 417 LKRNI 421
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 168/429 (39%), Positives = 249/429 (58%), Gaps = 12/429 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ LGAG E+GRSC+ ++ KTI+FDCG+H YS P F + + +D +L
Sbjct: 3 VLALGAGQEIGRSCIVVNINNKTIMFDCGMHMGYSDSRKFPDFQALSKTGNFDKIVDCIL 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQD 139
I+HFHLDH +LPYF E +KG ++MT+ TKA+ +LL D K+ + D ++ +D
Sbjct: 63 ISHFHLDHCGALPYFTEVLGYKGPIYMTYPTKAVLPILLEDCQKILSMKSHDSNIYSFED 122
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I + M+KI ++ ++TVEV+ G Y AGHV+GAAMF V + V+YTGDYS D+
Sbjct: 123 IKKCMEKIVPINMNETVEVSKGFTITAYYAGHVIGAAMFYVKVGDQSVVYTGDYSTTADQ 182
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A + PD+ I ESTYG + R +E+ F IH+ I +GG+ LIP FALGRA
Sbjct: 183 HLGTAWIDTLRPDLMITESTYGSVIRDCRKAKEREFLQSIHNCIERGGKTLIPIFALGRA 242
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QE+ LI++ YW IP+Y+A + +K +Y+ +I NE +R + N F+F
Sbjct: 243 QEICLIVESYWERMG--LEIPVYFAGGMTEKANEIYKRFINYTNESVREKILEKNVFEFS 300
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HI P + GP V+ +SPG L SG S ++F CSD +N ++PGY V GTL
Sbjct: 301 HIKPYRKGSELQ--GPCVIFSSPGMLHSGTSLRIFKNICSDPRNLVILPGYCVRGTLGDR 358
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+++ ++ + N A +N++V I+FSAHAD + + P +++LVHGE M
Sbjct: 359 VLNGSRKERIENEERA-INLEVKNIAFSAHADTCGIMKIIDQCRPKSLMLVHGEKARMKV 417
Query: 439 LKTKLMTEL 447
L+ + E
Sbjct: 418 LQKNIRNEF 426
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 327 bits (839), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 251/427 (58%), Gaps = 11/427 (2%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VG+SCV +S GK I+FDCG+H Y P F +I + ID +++THF
Sbjct: 1 GAGQDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHF 60
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E ++G V+MT+ TKA+ ++L DY K+ E+ F I +
Sbjct: 61 HLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLHIQQC 120
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ +D QT+ V+ + F Y AGHVLGAAMF V V+YTGDY+ DRHL A
Sbjct: 121 MKKVIAVDLRQTIRVSRDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGA 180
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A++ + PD+ I ESTY + + R +E F +V+H+ +S+GG+VLIP ALGRAQEL
Sbjct: 181 AQIDRLKPDLLITESTYATTIRESRLAKEAEFLNVVHTCVSKGGKVLIPISALGRAQELC 240
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++LDEYW +PIY+++ L + A Y+ I N+RI++ + N F FKH+ P
Sbjct: 241 ILLDEYWERMNL--KVPIYFSAGLTMQSNAYYKLLISWTNQRIKDTYVTRNAFDFKHVFP 298
Query: 323 LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS- 381
+ GP ++ A+PG L GLS ++ W ++N +IPG+ + GT+A+ + S
Sbjct: 299 FDRT-QLDGPGPCILFATPGMLTGGLSLEVLKHWAPVEQNLLIIPGFCLAGTVAQKLCSG 357
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+P V + T + Q+H ++FSAH D ++++ P N+ILVHGE +M LK
Sbjct: 358 KPTRVEVDKRTTIDVRCQIHLLAFSAHTDAKGIMDLVRQVEPHNVILVHGEKLKMDVLKA 417
Query: 442 KLMTELA 448
++ EL
Sbjct: 418 RINNELG 424
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/446 (38%), Positives = 258/446 (57%), Gaps = 19/446 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 1 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHF 60
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 61 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 120
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 121 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 180
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H + +GG+VLIP FALGRAQEL
Sbjct: 181 AWIDRCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFALGRAQELC 240
Query: 263 LILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 241 ILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI 296
Query: 321 SPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I
Sbjct: 297 KAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKI 354
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M L
Sbjct: 355 LSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFL 414
Query: 440 KTKLMTELADCNTKIITPKNCQSVEM 465
K K+ E P N ++V +
Sbjct: 415 KQKIEQEF---RVNCYMPANGETVTL 437
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 170/425 (40%), Positives = 249/425 (58%), Gaps = 13/425 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG +VGRSCV ++ G+TI+FDCG+H ++ P F I + ID ++
Sbjct: 3 VVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDCVI 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
I+HFHLDH +LPYF E + G ++MT TK + +LL D+ K+ D +F QDI
Sbjct: 63 ISHFHLDHCGALPYFTEVCGYNGPIYMTLPTKEVCPVLLDDFRKIVGAK-GDNIFSYQDI 121
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWC--YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
M K+ + +T + + F+ Y AGHVLGAAMF V + V+YTGDYS D+
Sbjct: 122 VNCMKKVTTISMSETYKHDE-DFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTTPDK 180
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A + PD+ I ESTYG R ++E+ F I I++GGRVLIP FALGRA
Sbjct: 181 HLGPASIKCVRPDLLITESTYGSITRDCRRVKEREFLKAISDCIARGGRVLIPIFALGRA 240
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL L+LD YW +P+Y++S L +K +Y+ +I NE ++ + N F++K
Sbjct: 241 QELCLLLDGYWERTG--LKVPVYFSSGLTEKANEIYKKFISYTNETVKKKIFERNVFEYK 298
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HI P + GP V+ ASPG L SG+S ++F WCSD+KN +IPGY V GT+ +
Sbjct: 299 HIKPFQKY-YMDNEGPMVLFASPGMLHSGMSLRMFKEWCSDEKNLVIIPGYCVRGTIGEK 357
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+++ K + ++ G + +++ +SFSAHAD +++ P N++LVHGE M +
Sbjct: 358 VLNGAKRLEIL-GEEKDIRIEIKNLSFSAHADAQGILNVIEQCSPRNVMLVHGERSRMKQ 416
Query: 439 LKTKL 443
LK +
Sbjct: 417 LKRSI 421
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/422 (39%), Positives = 249/422 (59%), Gaps = 13/422 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG +VGRSC+ ++ G+T++FDCG+H ++ P F I + ID ++
Sbjct: 3 VVPLGAGQDVGRSCILVTINGRTVMFDCGMHMGFNDERRFPDFSYISKTKNFDKVIDCII 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
I+HFHLDH +LPYF E + G ++MT TK + +LL D+ K+ D +F QDI
Sbjct: 63 ISHFHLDHCGALPYFTEVCGYSGPIYMTLPTKEVCPVLLDDFRKIVG-GKGDSIFSYQDI 121
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWC--YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
+ M K+ + ++T + + F+ Y AGHVLGAAMF V + V+YTGDYS D+
Sbjct: 122 SNCMKKVVTISMNETYKHDE-NFYITPYYAGHVLGAAMFHVSVGDQSVVYTGDYSTTPDK 180
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A + PD+ I ESTYG R ++E+ F + I++GGRVLIP FALGRA
Sbjct: 181 HLGPASIKCIRPDLLITESTYGSITRDCRRVKEREFLKAVSDCIARGGRVLIPIFALGRA 240
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL L+LD YW IP+Y++S L +K +Y+ +I NE ++ + N F++K
Sbjct: 241 QELCLLLDGYWERTG--LEIPVYFSSGLTEKANEIYKKFIGYTNETVKRKIFERNVFEYK 298
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HI P + GP V+ ASPG L SG+S ++F WC D+KN +IPGY V GT+ +
Sbjct: 299 HIKPFQRY-YMDNKGPMVLFASPGMLHSGMSLRIFKEWCEDEKNLVIIPGYCVRGTIGEK 357
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
I++ K + ++ G + +++ + FSAHAD + +++ P N++LVHGE M +
Sbjct: 358 ILNGAKRLEIL-GEEKDIKLEIKNLGFSAHADAQGILSVIEQCAPRNVMLVHGERSRMKQ 416
Query: 439 LK 440
LK
Sbjct: 417 LK 418
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 325 bits (833), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 173/446 (38%), Positives = 258/446 (57%), Gaps = 19/446 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HF
Sbjct: 129 GAGQDVGRSCILVSVAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 188
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MT T+AI +LL DY K++ E F Q I
Sbjct: 189 HLDHCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 248
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 249 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 308
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 309 AWIDRCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 368
Query: 263 LILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 369 ILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHI 424
Query: 321 SPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I
Sbjct: 425 KAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKI 482
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M L
Sbjct: 483 LSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLIGQAEPEHVLLVHGEAKKMEFL 542
Query: 440 KTKLMTELADCNTKIITPKNCQSVEM 465
K K+ E P N ++V +
Sbjct: 543 KQKIEQEF---RVNCYMPANGETVTL 565
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 169/427 (39%), Positives = 251/427 (58%), Gaps = 12/427 (2%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITH 83
+GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+H
Sbjct: 1 VGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 60
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 61 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 120
Query: 143 SMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ +RHL
Sbjct: 121 CMKKEVAGHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPERHLG 180
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 181 AAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQEL 240
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 241 CILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIK 298
Query: 322 PLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+
Sbjct: 299 AFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKIL 356
Query: 381 SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 357 SGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLK 416
Query: 441 TKLMTEL 447
K+ EL
Sbjct: 417 QKIEQEL 423
>gi|402696939|gb|AFQ90658.1| 73kDa cleavage and polyadenylation specific factor 3, partial
[Draco beccarii]
Length = 220
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 147/218 (67%), Positives = 174/218 (79%)
Query: 157 EVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIE 216
EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIE
Sbjct: 3 EVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 62
Query: 217 STYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFH 276
STYG +H+ R RE RF + +H +++GGR LIP FALGRAQELLLILDEYW
Sbjct: 63 STYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQXXXXXX 122
Query: 277 NIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSV 336
IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSV
Sbjct: 123 EIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSV 182
Query: 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
VMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGT
Sbjct: 183 VMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGT 220
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 324 bits (830), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 172/444 (38%), Positives = 255/444 (57%), Gaps = 32/444 (7%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--------- 74
L + PLGAG EVGRSC+ + K I+ DCG+H + + P F++I
Sbjct: 7 LQVYPLGAGQEVGRSCIIIKIFDKLIMLDCGLHMSMTDQTRYPDFEKIKQKFNFPANTQY 66
Query: 75 --AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV--SKVSV 130
ID++LI+HFHLDH +LPYF E + G ++MT TKA++ + DY KV
Sbjct: 67 TDIIDLVLISHFHLDHIGALPYFSEIYQYDGPIYMTAPTKALFPYMCEDYRKVISDTYKK 126
Query: 131 EDML---------------FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAA 175
E+M+ + +++I S K++ + +T++VNGIK Y AGHVLGA
Sbjct: 127 ENMIDDNNNNDQLQKMPFVYSQENIQNSFQKVQTIQLLETIDVNGIKIKPYYAGHVLGAC 186
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFT 235
MF+++ G++V+YTGD+ DRHL AA + + +PD+ I E TYG + + + RE+ F
Sbjct: 187 MFLIEYKGIKVVYTGDFHSNADRHLGAAWIDKINPDLLISECTYGTIVRESKRARERTFL 246
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
+ TI QGG+VLIP FALGRAQEL ++L+ YW + P+Y+A+ + +K Y+
Sbjct: 247 QQVQETIDQGGKVLIPVFALGRAQELCVLLETYWQRTQ--NQAPVYFAAGMIEKANFYYK 304
Query: 296 TYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
++ NE+I++ + N F FKHI P +++ P V+ A+PG L +GLS Q+F
Sbjct: 305 LFVNWTNEKIKSCYLIDNMFNFKHIKPFQKSLIKANM-PMVLFATPGMLHAGLSMQVFKE 363
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
WC D KN +IPGY V GTL ++S K+V L + T +NM+V +SFSAHAD
Sbjct: 364 WCYDSKNTLIIPGYCVAGTLGNKLLSGCKQVIL-DKKTYDVNMKVKNMSFSAHADAKGIL 422
Query: 416 TFLKELMPPNIILVHGESHEMGRL 439
+K N++LVHG+ M L
Sbjct: 423 GLIKHCEAKNVLLVHGDVARMMSL 446
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/453 (37%), Positives = 263/453 (58%), Gaps = 17/453 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSC+ + +G+TI+ DCG+H Y+ P F I ID ++
Sbjct: 3 VIPLGAGQDVGRSCILATLEGRTIMLDCGMHMGYNDYRKFPDFSYISKQLGFNRLIDCII 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
I+HFH+DH +LPYF E + G ++MTH TKAI ++LL D K+++ + + M ++++DI
Sbjct: 63 ISHFHIDHCGALPYFTEVLGYDGPIYMTHPTKAICQILLEDTRKIARKNNDKMTYNKEDI 122
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWC--YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
M K+ ++ ++T E + + F Y AGHVLGAAMF V + ++YTGDY+ DR
Sbjct: 123 ENCMKKVIPINMNETYE-HDVDFIIKPYPAGHVLGAAMFYVKVGCESLVYTGDYNTTPDR 181
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A + PD+ I ESTYG + R +E+ F I+ + GG+VLIP FALGRA
Sbjct: 182 HLGGAWIDCLRPDLFITESTYGSTIRDCRKAKEREFLSSIYECVKNGGKVLIPTFALGRA 241
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QE+ L++D YW ++P+Y+ + +A++ +Y+ YI NE IR + N F++K
Sbjct: 242 QEMCLLIDSYWEKMN--LSVPVYFTAGMAERANQIYRLYINYTNETIRKKILERNLFEYK 299
Query: 319 HISPLN-SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
+I L+ + D GP V++ASPG L SG S LF C DK N VIPGY V GT+
Sbjct: 300 YIKSLDKGVIDLP--GPMVILASPGMLHSGNSLNLFLKICHDKNNMIVIPGYCVRGTVGD 357
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
++ K + + + +N++V ++FSAHAD +K+ P N++LVHG+ + M
Sbjct: 358 KVLKGEKTIEVGKKI-YDVNIKVKNLAFSAHADAKGIIELIKQCQPKNVMLVHGDKNCMK 416
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEMYFNSE 470
LK ++ L P+N V++ N+E
Sbjct: 417 NLKARIENNL---RITTFAPENGTMVDIPKNTE 446
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/441 (38%), Positives = 255/441 (57%), Gaps = 15/441 (3%)
Query: 33 NEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLD 87
+VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+HFHLD
Sbjct: 1 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 60
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDK 146
H +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I M K
Sbjct: 61 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKK 120
Query: 147 IEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL AA +
Sbjct: 121 VVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWI 180
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
+ P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL ++L
Sbjct: 181 DKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILL 240
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS 325
+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI +
Sbjct: 241 ETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDR 298
Query: 326 IDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S +
Sbjct: 299 A--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQR 356
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM 444
++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK K+
Sbjct: 357 KLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIE 416
Query: 445 TELADCNTKIITPKNCQSVEM 465
EL P N ++V +
Sbjct: 417 QEL---RVSCYMPANGETVTL 434
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/434 (39%), Positives = 246/434 (56%), Gaps = 14/434 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSCV ++ K I+FDCG+H Y P F I + ID ++
Sbjct: 5 VVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGYYDERRFPDFSYISKNKQFTKIIDCVI 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQD 139
ITHFHLDH +LPYF E + G ++MT TKAI +LL DY K++ D F Q
Sbjct: 65 ITHFHLDHCGALPYFTEMVGYDGPIYMTLPTKAITPILLEDYRKITVDRKGDTNFFTPQM 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ +D HQT++V+ + Y AGHVLGAAMF + V+YTGDY+ DR
Sbjct: 125 IKDCMKKVIPIDLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL +A + Q PD+ I E+TY + + RE+ F +H + +GG+VLIP FALGR
Sbjct: 185 HLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPVFALGRV 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL +++D YW H +PIY+++ LA+K Y+ +I N++I+ F N F FK
Sbjct: 245 QELCILIDSYWEQMNLSH-VPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMFDFK 303
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI P S D G V+ A+PG L +G S ++F W ++ N +IPGY V GT+
Sbjct: 304 HIKPFQS--HLVDAPGAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVGN 361
Query: 378 TIISE---PKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+++ + V + T + ++H +SFSAHAD +K P N+ILVHGE
Sbjct: 362 KLLANNAGSQMVEIDKKTTLEVKCKIHNLSFSAHADAKGILQLIKMSNPRNVILVHGEKE 421
Query: 435 EMGRLKTKLMTELA 448
+MG L K++ E+
Sbjct: 422 KMGFLSQKIIKEMG 435
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 182/488 (37%), Positives = 269/488 (55%), Gaps = 30/488 (6%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
Q+ +TPLGAG +VG+SC+ ++ GK I+ DCG+HP Y+ P F I ID
Sbjct: 2 QIKVTPLGAGQDVGKSCILVTIGGKNIMLDCGMHPGYNDERRFPDFRYISKEGNFTGLID 61
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS--KVSVEDM-L 134
+++I+HFHLDH SLPYF E + G ++ TH TKAI +LL DY K+S + VE+ +
Sbjct: 62 LVIISHFHLDHCGSLPYFTEVLGYDGPMYATHPTKAIMPILLEDYRKISVERRGVEEKDM 121
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
F Q I M K+ +T+ + + Y AGHVLGAAMF + + +LYTGDY+
Sbjct: 122 FSSQQIKDCMMKVTPCALEETIMIEEDFEIRPYYAGHVLGAAMFYIRVGQQSILYTGDYN 181
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
DRHL +A + PD+ I ESTY + + + RE+ + + + GG+VLIP F
Sbjct: 182 MTPDRHLGSARCDKLRPDLLITESTYATTIRESKRWRERDMLNQVSECVRNGGKVLIPVF 241
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQEL L+LD +W +PIY+++ L +K Y+ YI N++I++ F N
Sbjct: 242 ALGRAQELCLLLDAFWER--TGLKVPIYFSAGLTEKANLYYKMYISWTNQKIKDTFVKRN 299
Query: 314 PFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F F+HI P + F D GP V+ A+PG L GLS ++F W KN ++PGY V
Sbjct: 300 VFDFQHIQPFDRA--FIDRPGPMVLFATPGMLHGGLSMEVFKKWAPSDKNLVIMPGYCVA 357
Query: 373 GTLAKTIISEPKEVTLMN------GLTAPLNMQVHYISFSAHADYAQTSTFLKELM---P 423
GTL ++S + +++ G + ++ ++SFSAHAD T +K+ + P
Sbjct: 358 GTLGHKVLSNGGKPQIIDMPRDEGGGKLHVRCKIKHLSFSAHADAKGIMTLIKQAISVDP 417
Query: 424 PNIILVHGESHEMGRLKTKLMTEL-------ADCNTKIITPKNCQSVEMYFNSEKMAKTI 476
N++LVHGE H+M LK ++ TE A+ T IT + V++ S ++
Sbjct: 418 VNVMLVHGERHKMEALKERIKTEFGLPCYDPANGATTYITTFHGVPVQLSTRSATCSRFP 477
Query: 477 GRLAEKTP 484
G E P
Sbjct: 478 GWAVESDP 485
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 252/444 (56%), Gaps = 14/444 (3%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHF 84
GAG +VG+SCV ++ GK I+FDCG+H Y P F I S ID +++THF
Sbjct: 3 GAGQDVGKSCVIVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVTHF 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRS 143
HLDH +LPYF E + G ++MT+ TKA+ L+L DY KV + E F I +
Sbjct: 63 HLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVERKGEQEQFSVLQIQKC 122
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ +D QT++V ++F Y AGHVLGAAMF V V+YTGDY+ DRHL A
Sbjct: 123 MKKVTAVDLRQTIKVGADLEFRAYYAGHVLGAAMFWVKAGDDTVVYTGDYNMTPDRHLGA 182
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A++ + PD+ I ESTY + + RE+ F +H ++ GG+VLIP FALGRAQEL
Sbjct: 183 AQIDRLEPDLLITESTYATTVRDSKRAREREFLKAVHKCVAAGGKVLIPVFALGRAQELC 242
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++LDEYW ++PIY ++ L + Y+ I N+++++ + N F FKH+ P
Sbjct: 243 ILLDEYWER--TNLDMPIYISAGLTMQANVYYKLLISWTNQKVKDTYVTRNTFDFKHVIP 300
Query: 323 LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL-AKTIIS 381
GP V+ A+PG L GLS ++F W + N ++PG+ V GT+ +K +
Sbjct: 301 FER-SKIDAPGPCVLFATPGMLSGGLSLEVFKHWAPSESNMIILPGFCVAGTVGSKLMPG 359
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+P ++ L T + Q+ ++SFSAH D ++ + P N++LVHGE +M LK
Sbjct: 360 KPAKIDLDKRTTLDVRCQIQHLSFSAHTDAKGILDLVRHVAPRNVVLVHGEKPKMAILKK 419
Query: 442 KLMTELADCNTKIITPKNCQSVEM 465
K+ ++L P N ++VE+
Sbjct: 420 KISSDLC---IPCYDPANLETVEI 440
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/425 (39%), Positives = 249/425 (58%), Gaps = 13/425 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG +VGRSC+ +S KG+TI+FDCG+H ++ P F I + ID ++
Sbjct: 3 VIPLGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDCII 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
I+HFHLDH +LPYF E + G ++MT TK + +LL D+ K+ D +F QDI
Sbjct: 63 ISHFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKIV-AGKGDSIFTYQDI 121
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWC--YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
+ M K+ + ++T + + F+ Y AGHVLGAAMF V + V+YTGDYS D+
Sbjct: 122 SNCMKKVVTISMNETYKHDE-DFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTTPDK 180
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL A + PD+ I ESTYG R ++E+ F + +++GGRVLIP FALGRA
Sbjct: 181 HLGPASIKCIRPDLLITESTYGSITRDCRKVKEREFLKAVSDCVARGGRVLIPIFALGRA 240
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL L+LD YW P+Y++S L +K +Y+ +I NE +R + N F++K
Sbjct: 241 QELCLLLDGYWERTG--LKTPVYFSSGLTEKANEIYKKFISYTNETVRKKIFERNMFEYK 298
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HI P GP V+ ASPG L SG+S ++F WC D+KN +IPGY V GT+ +
Sbjct: 299 HIKPFQR-HYMESKGPMVLFASPGMLHSGMSLKIFKEWCEDEKNLVIIPGYCVRGTIGEK 357
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+++ ++ ++ G + + ++V ++FSAHAD +++ P N++LVHGE M
Sbjct: 358 VLNGATKLEIL-GESREIRLEVKNLAFSAHADAPGILNVVEQCSPRNVMLVHGEKSRMKV 416
Query: 439 LKTKL 443
LK +
Sbjct: 417 LKRSI 421
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 166/439 (37%), Positives = 245/439 (55%), Gaps = 10/439 (2%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P+ D + + PLGAG +VGRSCV ++ G+TI+FDCG+H Y+ P F ++
Sbjct: 2 PLLFASDDIRVVPLGAGQDVGRSCVLVTMGGRTIMFDCGMHMGYNDARRFPDFTQVAQGP 61
Query: 76 ----IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSV 130
ID+ +ITHFHLDH +LPYF E+ + G ++MT T+AI ++LL DY K++
Sbjct: 62 LTDHIDLAIITHFHLDHCGALPYFTEQVGYDGPLYMTMPTRAIAQVLLEDYRKIAVSRQG 121
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E F DI ++K +D HQTV ++ + Y AGHVLGAAMF V + V+YT
Sbjct: 122 EKNFFTRDDIKTCLNKATTIDLHQTVVIDQDFEIKAYYAGHVLGAAMFYVRVGNQSVVYT 181
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDY+ DRHL AA + + PD+ I ESTY + R RE I + +GG+VL
Sbjct: 182 GDYNMSPDRHLGAAWIDRCEPDVIISESTYATTIRDSRRAREHDLLTKITQCVQRGGKVL 241
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P FALGRAQEL ++L+ +W +PIY+++ L + Y+ +I N++++ F
Sbjct: 242 LPVFALGRAQELCILLETHWQR--TGMRVPIYFSTGLTARANEYYKLFITWTNQKLKETF 299
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
N F F+H+ P + GP V+ A+PG L +G S F WC D +N ++PGY
Sbjct: 300 VERNLFDFQHVQPFDR-SYLEHAGPQVLFATPGMLHAGTSLLAFTHWCEDPRNMVILPGY 358
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
GT+ II+ +E+ + G + M V Y+SFSAHAD + + ++LV
Sbjct: 359 CTAGTVGAKIIAGIRELDI-EGRHYTVRMDVEYLSFSAHADAKGIMQLVSQSGAKQVVLV 417
Query: 430 HGESHEMGRLKTKLMTELA 448
HGE +M L ++ EL
Sbjct: 418 HGEQQKMAFLAGRIQQELG 436
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/434 (39%), Positives = 244/434 (56%), Gaps = 15/434 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG +VGRSCV +S K I+FDCG+H Y P F I + +D ++
Sbjct: 5 VVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKTLDCII 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LPYF E + G ++MT TKAI +LL DY K+S E F Q
Sbjct: 65 ITHFHLDHCGALPYFTEMCGYDGPIYMTLPTKAIVPILLEDYRKISVDRKGETNFFTPQM 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQT++V+ + Y AGHVLGAAMF + V+YTGDY+ DR
Sbjct: 125 IKDCMKKVIPIALHQTIKVDDELSIKAYYAGHVLGAAMFYAKVGEESVVYTGDYNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL +A + Q P++ I E+TY + + RE+ F +H + +GG+VLIP FALGR
Sbjct: 185 HLGSAWIDQVRPNLLITETTYATTIRDSKRGRERDFLKRVHECVEKGGKVLIPVFALGRV 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL +++D YW N+PIY++ LA+K Y+ +I N++I+ F N F FK
Sbjct: 245 QELCILIDSYWEQMN--LNVPIYFSEGLAEKANFYYKLFITWTNQKIKQTFVKRNMFDFK 302
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI P + +D GP V+ A+PG L +G S ++F W ++ N +IPGY V GT+
Sbjct: 303 HIKPFDR--HLADAPGPMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVGN 360
Query: 378 TIISE---PKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
++S P+ V + T + ++H +SFSAHAD +K P N++LVHGE
Sbjct: 361 KLLSNAGGPQMVEIDKKTTLEVKCKIHNLSFSAHADAKGIMQLIKMSQPKNVLLVHGEKE 420
Query: 435 EMGRLKTKLMTELA 448
+M L K+ +
Sbjct: 421 KMRYLSDKISKDFG 434
>gi|390354408|ref|XP_796109.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 457
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 141/233 (60%), Positives = 181/233 (77%)
Query: 42 MSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF 101
+ +KGK I+ DCGIHP GM +LPYFD IDP ID+LL++HFHLDH LPYFL+ T F
Sbjct: 2 LEFKGKKIMLDCGIHPGREGMDSLPYFDLIDPEEIDLLLVSHFHLDHCGGLPYFLKNTQF 61
Query: 102 KGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGI 161
+GRVFMTHA+KAIY+ L+DYVKVS +S E ML+ + D+ SMD+IE ++FHQ V++NGI
Sbjct: 62 RGRVFMTHASKAIYRWNLSDYVKVSNLSAERMLYTDADLQASMDRIETVNFHQEVDINGI 121
Query: 162 KFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGV 221
+F CY AGHVLGA MF+++IAGV++LYTGD+SR+EDRHL AE+P PDI I E+TYG
Sbjct: 122 RFSCYHAGHVLGACMFLIEIAGVKILYTGDFSRQEDRHLMQAEIPNVKPDILITEATYGT 181
Query: 222 QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPE 274
+H+ R RE RFT +H +++GGR LIP FALGRAQELLLIL ++ + PE
Sbjct: 182 HIHEKREDREARFTSTVHDIVNRGGRCLIPVFALGRAQELLLILGKHVMSSPE 234
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 359 DKKNACVIPGYVVEGT------LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYA 412
++ C+IP + + L K ++S P+EV ++G L M V YISFSAHADY
Sbjct: 203 NRGGRCLIPVFALGRAQELLLILGKHVMSSPEEVQTLSGQKIALKMTVDYISFSAHADYE 262
Query: 413 QTSTFLKELMPPNI 426
QTS F++ L PP I
Sbjct: 263 QTSEFIRSLKPPQI 276
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 180/484 (37%), Positives = 268/484 (55%), Gaps = 21/484 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES- 433
+ I+S +++ + + MQV Y+SFSAHAD + + +L+ N LV E
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHAD----AKGIMQLVGQNFRLVSSEQA 414
Query: 434 -HEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSG 492
E+G + +L C + + Q + M S + + P+ TV
Sbjct: 415 LKELGLAEHQLRFT---CRVHLHDTRKEQEMAMRVYSHLKSVLKDHCVQHLPDGSVTVES 471
Query: 493 ILVK 496
ILV+
Sbjct: 472 ILVQ 475
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/432 (37%), Positives = 251/432 (58%), Gaps = 12/432 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSC+ +S GK I+FDCG+H Y+ P F I + ID ++
Sbjct: 5 VRPLGAGQDVGRSCLLVSIGGKNIMFDCGMHMGYNDARRFPDFASIKRTGPYTDVIDCVI 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
++HFHLDH ++ +F E + G ++MTH TKAI +LL DY K++ + E F +
Sbjct: 65 VSHFHLDHCGAIVHFSEVCGYDGPIYMTHPTKAICPILLEDYRKLTVERKGETNFFTSAN 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ ++ H++V V+ I+ Y AGHVLGAAMF V + V+YTGD++ DR
Sbjct: 125 IKACMKKVIAVNLHESVRVDDEIEIKAYYAGHVLGAAMFHVRVGSESVVYTGDFNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PD+ I ESTY + + RE F IH + QGG+VLIP FALGRA
Sbjct: 185 HLGAAWIDRCRPDLLITESTYATTIRDSKRNREGEFLRKIHECVEQGGKVLIPVFALGRA 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++++ YW +P+Y+++ L K Y+ +I N++I+ F N F+FK
Sbjct: 245 QELCILVETYWERLGL--TVPVYFSAGLTAKANNYYKLFITWTNQKIKRTFVERNMFEFK 302
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
HI P + + GP V+ A+PG L +G+S F W + KN ++PGY V GT+
Sbjct: 303 HIKPFDRA-FLDNPGPMVLFATPGMLHAGMSLDAFRKWAPNDKNMVILPGYCVAGTVGNK 361
Query: 379 IISEPKEVTLMNGLTAPLNMQ--VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+++ K++ + + ++++ V +SFSAHAD ++ P N++LVHGE +M
Sbjct: 362 VLAGHKQIEMPDRARTVIDVRLSVQNLSFSAHADAKGIVQLIRHAEPRNVMLVHGEKAKM 421
Query: 437 GRLKTKLMTELA 448
LK K+++E+
Sbjct: 422 AFLKAKIISEIG 433
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/449 (38%), Positives = 252/449 (56%), Gaps = 17/449 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
I PLGAG +VGRSC+ ++ GK ++ DCG+H Y P F I +D ++
Sbjct: 10 IVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDCVI 69
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH SLP+ E + G ++MT+ TKAI ++LL DY KV + E F D
Sbjct: 70 ISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFTSDD 129
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K H+ ++V+ + + AGHVLGAAMF + + VLYTGDY+ DR
Sbjct: 130 IKNCMKKCIGCALHEVIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYNMTPDR 189
Query: 199 HLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL AA LP P + I ESTY + + RE+ F +H ++ +GG+V+IP FALGR
Sbjct: 190 HLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHESVMKGGKVIIPVFALGR 249
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQEL ++L+ YW +PIY++ LA++ Y+ +I NE I+ F N F+F
Sbjct: 250 AQELCILLESYWERMA--LTVPIYFSQGLAERANQYYRLFISWTNENIKKTFVERNMFEF 307
Query: 318 KHISPL-NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
KHI P+ +D GP V+ ++PG L G S ++F WCSD N ++PGY V GT+
Sbjct: 308 KHIRPMEKGCEDMP--GPQVLFSTPGMLHGGQSLKVFKKWCSDPINMIIMPGYCVAGTVG 365
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+I+ K + + +G + + V Y+SFSAHAD +++ P +++ VHGE+ +M
Sbjct: 366 AKVINGEKRIEI-DGKMHDIRLGVEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEAEKM 424
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEM 465
LK K+ E N + P N ++V +
Sbjct: 425 EFLKGKVEKEY---NVPVHMPANGETVSI 450
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 172/442 (38%), Positives = 247/442 (55%), Gaps = 22/442 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSCV ++ K I+FDCG+H + P F I + ID ++
Sbjct: 5 VVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDCVI 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LP+F E + G ++MT TKAI +LL DY K++ + E F Q
Sbjct: 65 ITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTAQM 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ ++ HQT++V+ + Y AGHVLGAAMF + V+YTGDY+ DR
Sbjct: 125 IKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL +A + Q PD+ I E+TY + + RE+ F IH + +GG+VLIP FALGR
Sbjct: 185 HLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALGRV 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL +++D YW H IPIY+++ LA+K Y+ +I N++I+ F N F FK
Sbjct: 245 QELCILIDSYWEQMNLGH-IPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMFDFK 303
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI P S D G V+ A+PG L +G S ++F W ++ N +IPGY V GT+
Sbjct: 304 HIKPFQS--HLVDAPGAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVGN 361
Query: 378 TIISEPKE-----------VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
+++ + V + T + ++H +SFSAHAD +K P N+
Sbjct: 362 KLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFSAHADAKGILQLIKMSNPRNV 421
Query: 427 ILVHGESHEMGRLKTKLMTELA 448
ILVHGE +MG L K++ E+
Sbjct: 422 ILVHGEKEKMGFLSQKIIKEMG 443
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 317 bits (813), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/429 (39%), Positives = 243/429 (56%), Gaps = 12/429 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
I PLGAG +VGRSC+ ++ K I+ DCG+H Y P F I +D ++
Sbjct: 36 IVPLGAGQDVGRSCILITIGTKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDCVI 95
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F D
Sbjct: 96 ISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTSDD 155
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ H+ ++V+ + + AGHVLGAAMF + + VLYTGDY+ DR
Sbjct: 156 IKNCMKKVIGCALHEIIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYNMTPDR 215
Query: 199 HLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL AA LP P I I ESTY + + RE+ F +H T+ +GG+V+IP FALGR
Sbjct: 216 HLGAARVLPGVRPTILISESTYATTIRDSKRARERDFLRKVHETVMKGGKVIIPVFALGR 275
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQEL ++L+ YW N+PIY++ LA++ Y+ +I NE I+ F N F+F
Sbjct: 276 AQELCILLESYWERMA--LNVPIYFSQGLAERANQYYRLFISWTNENIKKTFVERNMFEF 333
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHI P+ + GP V+ ++PG L G S ++F WCSD N ++PGY V GT+
Sbjct: 334 KHIRPMEKGCE-DQPGPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGYCVAGTVGA 392
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
+I+ K + + +G + + V Y+SFSAHAD +++ P +++ VHGE+ +M
Sbjct: 393 RVINGEKRIEI-DGKVHEIKLGVEYMSFSAHADAKGIMQLIRQCEPKHVMFVHGEAEKME 451
Query: 438 RLKTKLMTE 446
LK K+ E
Sbjct: 452 FLKGKVEKE 460
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 178/484 (36%), Positives = 265/484 (54%), Gaps = 26/484 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----AIDVLLI 81
+T LGAG ++GRSCV +S + KTI+FDCG+H +S P F + ID ++I
Sbjct: 3 VTILGAGQDIGRSCVVVSIQNKTIMFDCGMHMGHSDHRRFPDFKLLGAGPYTGVIDCVII 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF-----D 136
THFH+DH LPYF E+ + G ++MT TKA+ ++L DY KV + F +
Sbjct: 63 THFHMDHCGGLPYFTERCKYAGPIYMTPPTKAVLPIILQDYCKVYNERDDSSKFQYPTYN 122
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E++I M K+ + +TVE+ Y AGHVLGAAMF V + V+YTGDY+
Sbjct: 123 EENIKACMKKVIPIAMDETVEIEKDFTITPYYAGHVLGAAMFHVRVGDESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL A +P+ P++ I ESTY + + R +E+ F + + + GG+VLIP FAL
Sbjct: 183 PDRHLDGAWMPKVYPNVLITESTYALLVRDCRREKEREFIESVVQCVKNGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRA EL L+LD +W +IPIY ++ L K +Y+ +I +E IRN N F
Sbjct: 243 GRAHELCLLLDTHWEKSKL--SIPIYTSATLTHKANDIYKQFIDYTHEHIRNTMHKRNLF 300
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
F+H+ +S + S GP ++ +SPG L SG S +F WC D KN + PGY V GT+
Sbjct: 301 DFQHVKQFDS-NLASLEGPMILFSSPGMLHSGPSLSIFKKWCGDPKNMVIFPGYCVRGTI 359
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
+ +++ ++ + G+ P+ M+V + FSAHAD + +++ P NIILVHG+
Sbjct: 360 GERVLNGASQIEV-GGIVYPVRMKVKNMPFSAHADQKGILSLVQQCEPENIILVHGDIMR 418
Query: 436 MGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV-----GETV 490
M R+K L T L P + N E+ T + +++ E G+T+
Sbjct: 419 MKRMKNILETTLG-------IPTLHPPIGATLNIERPKHTTASITKESLEYLQSSNGKTI 471
Query: 491 SGIL 494
GI+
Sbjct: 472 EGIM 475
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/452 (37%), Positives = 253/452 (55%), Gaps = 17/452 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
L I PLGAG +VGRSC+ ++ GK ++ DCG+H Y P F I +D
Sbjct: 10 HLKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 69
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E + G ++MT+ TKAI ++LL DY KV + E F
Sbjct: 70 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFT 129
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
DI M K H+ ++V+ + + AGHVLGAAMF + + VLYTGDY+
Sbjct: 130 SDDIKNCMKKCIGCALHEVIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYNMT 189
Query: 196 EDRHLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA LP P + I ESTY + + RE+ F +H ++ +GG+V+IP FA
Sbjct: 190 PDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHESVMKGGKVIIPVFA 249
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L+ YW +PIY++ LA++ Y+ +I NE I+ F N
Sbjct: 250 LGRAQELCILLESYWERMAL--TVPIYFSQGLAERANQYYRLFISWTNENIKKTFVERNM 307
Query: 315 FKFKHISPL-NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F+FKHI P+ +D GP V+ ++PG L G S ++F WCSD N ++PGY V G
Sbjct: 308 FEFKHIRPMEKGCEDMP--GPQVLFSTPGMLHGGQSLKVFKKWCSDPINMIIMPGYCVAG 365
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ +I+ K + + +G + + V Y+SFSAHAD +++ P +++ VHGE+
Sbjct: 366 TVGAKVINGEKRIEI-DGKMHDIRLGVEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEA 424
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E + + P N ++V +
Sbjct: 425 EKMEFLKGKVEKEYS---VPVHMPANGETVSI 453
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/432 (38%), Positives = 244/432 (56%), Gaps = 12/432 (2%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I PLGAG +VGRSC+ ++ GK I+ DCG+H Y P F I +D
Sbjct: 7 EIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFT 126
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
DI M K+ H+ + V N + + AGHVLGAAMF + + VLYTGDY+
Sbjct: 127 SDDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMT 186
Query: 196 EDRHLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
DRHL AA LP P + I ESTY + + RE+ F +H + +GG+V+IP FA
Sbjct: 187 PDRHLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHECVMKGGKVIIPVFA 246
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LGRAQEL ++L+ YW N+PIY++ LA++ Y+ +I NE I+ F N
Sbjct: 247 LGRAQELCILLESYWERMA--LNVPIYFSQGLAERANQYYRLFISWTNENIKKTFVERNM 304
Query: 315 FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
F+FKHI P+ + GP V+ ++PG L G S ++F WCSD N ++PGY V GT
Sbjct: 305 FEFKHIKPMEKGCE-DQPGPQVLFSTPGMLHGGQSLKVFKKWCSDPLNMIIMPGYCVAGT 363
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ +I+ K++ + + + + V Y+SFSAHAD +++ P +++ VHGE+
Sbjct: 364 VGARVINGEKKIEIDQKMHE-IRLGVEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEAS 422
Query: 435 EMGRLKTKLMTE 446
+M LK K+ E
Sbjct: 423 KMEFLKGKVEKE 434
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/429 (38%), Positives = 244/429 (56%), Gaps = 12/429 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
I PLGAG +VGRSC+ ++ GK I+ DCG+H Y P F I +D ++
Sbjct: 10 IVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDCVI 69
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH SLP+ E + G ++MT+ TKAI +LL DY KV + E F D
Sbjct: 70 ISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGESNFFTSDD 129
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ H+ ++V+ + + AGHVLGAAMF + + VLYTGDY+ DR
Sbjct: 130 IKNCMKKVIGCALHEIIQVDDQLSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMTPDR 189
Query: 199 HLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL AA LP P + I ESTY + + RE+ F +H T+ +GG+V+IP FALGR
Sbjct: 190 HLGAARVLPGVRPTVLISESTYATTIRDSKRARERDFLRKVHETVMKGGKVIIPVFALGR 249
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQEL ++L+ YW ++PIY++ LA++ Y+ +I NE I+ F N F+F
Sbjct: 250 AQELCILLESYWERMA--LSVPIYFSQGLAERANQYYRLFISWTNENIKKTFVERNMFEF 307
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHI P+ + GP V+ ++PG L G S ++F WC D N ++PGY V GT+
Sbjct: 308 KHIRPMEKGCE-DQPGPQVLFSTPGMLHGGQSLKVFKKWCGDPLNMIIMPGYCVAGTVGA 366
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
+I+ K++ + +G + + V Y+SFSAHAD +++ P +++ VHGE+ +M
Sbjct: 367 RVINGEKKIEI-DGKMHDIKLGVEYMSFSAHADAKGIMQLIRQCEPQHVMFVHGEAEKME 425
Query: 438 RLKTKLMTE 446
LK K+ E
Sbjct: 426 FLKGKVEKE 434
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 239/398 (60%), Gaps = 16/398 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H + +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHEAVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
GT+ I+S +++ + + MQV Y+SFSAHAD
Sbjct: 357 GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHAD 394
>gi|68076685|ref|XP_680262.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
berghei strain ANKA]
gi|56501171|emb|CAH99756.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium berghei]
Length = 888
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 157/385 (40%), Positives = 247/385 (64%), Gaps = 13/385 (3%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+D+ DI+ +M+ IE ++FH+ +E+ +KF Y AGHV+GA MF+V+I +R+LYTGD
Sbjct: 167 NVLYDDDDIDTTMELIETVNFHENIELENVKFTAYRAGHVIGACMFLVEINNIRLLYTGD 226
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE F +++ + ++ G+VL+P
Sbjct: 227 YSREIDRHIPIAEIPNIDVHVLICEGTYGIKVHDNRRKREAIFLNMLTNILNSKGKVLLP 286
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
FALGRAQE+LLIL+E+W+ +P IPI+Y S +A K + +Y+TYI ++ I+ + N
Sbjct: 287 VFALGRAQEILLILEEHWNRNPNLQKIPIFYISSMATKSLCIYETYINLCSDFIK-KIVN 345
Query: 312 S--NPFKFKHISPLNSIDD-----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF FK++ S+D + D P VVMASPG LQSG+S+ +F+I SDKK+
Sbjct: 346 EGKNPFNFKYVKYAKSLDSILNYLYQDNYPCVVMASPGMLQSGISKSIFNIIASDKKSGV 405
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
+I GY ++GTLA + +EP+ VT+ + L Q ISFSAH+D+ QT TF+++L P
Sbjct: 406 IITGYTIKGTLADELKTEPEFVTINDKLVKR-KCQFEQISFSAHSDFNQTKTFIEKLKCP 464
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
N++LVHG+ +E+ RLK KL+ E + TP+ Q V +F ++G+L+
Sbjct: 465 NVVLVHGDRNELNRLKNKLIDEKK--YLSVFTPEILQKVSFHFEHNDHVISLGKLSHHIK 522
Query: 485 EVGETVSGILVKKGFTYQIMAPDDL 509
++ + + L+KK ++ ++L
Sbjct: 523 KINKKIR--LLKKKNQIKLTEKNEL 545
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/102 (55%), Positives = 72/102 (70%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + + +I+ DCGIHPA+ G+ LP +D D S IDV LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISKIDVCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
+DH+ +LPY + KT FKGRVFMT ATK I LL +DY ++ K
Sbjct: 66 MDHSGALPYLINKTRFKGRVFMTEATKGICYLLWSDYARIEK 107
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/449 (38%), Positives = 250/449 (55%), Gaps = 42/449 (9%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ + PLGAG +VGRSCV +S GK I+FDCG+H Y+ P F I + +D
Sbjct: 3 EIKVVPLGAGQDVGRSCVLVSIGGKNIMFDCGMHMGYNDERRFPDFSYITRAGTLTEHLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH SLP+ E F G ++MT TKAI +LL DY K++ + E F
Sbjct: 63 CVIISHFHLDHCGSLPHMSEMIGFDGPIYMTIPTKAICPILLEDYRKITVEKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ ++ HQTV+V+ ++ Y AGHVLGAAMF V + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHVKVGSQSVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL RE+ F +H + +GG+VLIP FAL
Sbjct: 183 ADRHL---------------------------GCRERDFLQKVHDCVEKGGKVLIPVFAL 215
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 216 GRAQELCILLETFWDRMNL--KAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 273
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+F+HI P + ++D GP VV A+PG L GLS +F W S++KN ++PGY V GT
Sbjct: 274 EFRHIKPFDR--SYTDNPGPMVVFATPGMLHGGLSLHVFKKWASNEKNMVIMPGYCVAGT 331
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I++ +++ L N T + + V Y+SFSAHAD +K+ P N++LVHGE+
Sbjct: 332 VGHKILNGQRKIELENRQTIDVKLSVQYMSFSAHADAKGIMQLIKQCEPKNVMLVHGEAK 391
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSV 463
+M LK K++ + + P N +SV
Sbjct: 392 KMDFLKQKIVQQFG---VQCFMPPNGESV 417
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 175/450 (38%), Positives = 245/450 (54%), Gaps = 34/450 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA---------I 76
+ PLGAG +VGRSCV + G+ ++FDCGIH P F + S I
Sbjct: 5 VIPLGAGQDVGRSCVIVELGGRRLMFDCGIHMV--NQQQFPDFHFLQGSQQQPLDFTNHI 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV------ 130
D +LITHFHLDH +L YF E + G + T TKAI L+L D+ KVS +
Sbjct: 63 DCVLITHFHLDHCGALTYFTEGVGYHGPILATPPTKAIIPLMLEDFRKVSSMQQGQKGGG 122
Query: 131 -----------EDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFM 178
+D F I + KI + H+T + G IK Y AGHVLGA MF
Sbjct: 123 QGSGGNQNSMNQDTAFTSDMIKACIAKISTIQLHETQVIKGDIKVTAYYAGHVLGACMFY 182
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
V+ G V+YTGDY+ DRHL AA + + PD+CI E+TY + + RE+ F V+
Sbjct: 183 VECNGESVVYTGDYNMTADRHLGAAWIDKLRPDVCITETTYATTIRDSKRSREREFLKVV 242
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
H T+ GG+VLIP FALGRAQEL ++L+ YW N PIY++ L +K Y+ +I
Sbjct: 243 HETLDNGGKVLIPVFALGRAQELCVLLETYW-NRTNLQ-YPIYFSGGLTEKANFYYKLFI 300
Query: 299 LSMNERIRNQFA-NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
NE+I+ F N N F+F+H+ L++ SD P V ASPG L G S Q+F W
Sbjct: 301 NWTNEKIKKTFTKNQNMFQFQHVKTLDTASIKSD-QPMVCFASPGMLHGGYSLQIFKDWA 359
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTF 417
+KN +IPGY + GT+ ++S K++ + +G + ++++ +SFSAHAD
Sbjct: 360 GQEKNTLIIPGYCMPGTVGNKLLSGEKKINI-DGRDIDVRIKIYNMSFSAHADSKGIMEL 418
Query: 418 LKELMPPNIILVHGESHEMGRLKTKLMTEL 447
L L N++LVHGE +M LK ++ +L
Sbjct: 419 LSHLESKNVVLVHGEKQKMAVLKLQIEEQL 448
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 163/411 (39%), Positives = 242/411 (58%), Gaps = 16/411 (3%)
Query: 28 PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLIT 82
P GAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D ++I+
Sbjct: 42 PAGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIIS 101
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDIN 141
HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F Q I
Sbjct: 102 HFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK 161
Query: 142 RSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL
Sbjct: 162 DCMKKVVAVRLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHL 221
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQE
Sbjct: 222 GAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQE 281
Query: 261 LLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
L ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N F+FK
Sbjct: 282 LCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFK 337
Query: 319 HISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+
Sbjct: 338 HIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGH 395
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
I+S +++ + + MQV Y+SFSAHAD + + P +++L
Sbjct: 396 KILSGQRKLEMEGRQVLEIRMQVEYMSFSAHADAKGIMQLVGQAEPESVLL 446
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 191/562 (33%), Positives = 286/562 (50%), Gaps = 78/562 (13%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-------- 73
D + + PLGAG +VGRSC+ + K I+ DCG+H + + P F++I
Sbjct: 8 DCIEVYPLGAGQDVGRSCILIKIYDKIIMLDCGLHMGVNDLTRYPDFEKIKQIWNIPEKR 67
Query: 74 ---SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV----- 125
ID++LI+HFHLDH +LPYF E + G ++MT TKA+ + D+ KV
Sbjct: 68 KWDQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKVITESQ 127
Query: 126 SKVSVED-----------------MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTA 168
K +D +++ +++I + K + + +T++VNGIK Y A
Sbjct: 128 KKEFTDDSIPQTPAQKIINDSRYPLIYTQENIQKCFQKAKTIQLLETIDVNGIKIKPYYA 187
Query: 169 GHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRN 228
GHVLGA MFM++ V+V+YTGD+ DRHL AA + + PD+ I E TYG + +
Sbjct: 188 GHVLGACMFMIEYRNVKVVYTGDFHSNADRHLGAAWIEKVKPDLLISECTYGTIIRDSKR 247
Query: 229 IREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAK 288
REK F I TI QGG+VLIP FALGRAQEL ++L+ YW +P+Y+A+ + +
Sbjct: 248 AREKNFLKQIQETIDQGGKVLIPVFALGRAQELCILLETYWQRTQS--QVPVYFAAGMIE 305
Query: 289 KCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGL 348
K Y+ ++ NE+I++ + N F FK+I P S GP V+ A+PG L +GL
Sbjct: 306 KANFYYKLFVNWTNEKIKSSYLTDNMFDFKYIKPF-SRSLIKTNGPMVLFATPGMLHAGL 364
Query: 349 SRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISE-------------------------- 382
S Q+F WC D+KN +IPGY V GTL +IS
Sbjct: 365 SMQVFKEWCYDEKNTLIIPGYCVAGTLGCVLISSFFFHIMKINFEFYLFFTLFDKIIGNK 424
Query: 383 ----PKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
K+V +++ +NMQV +SFSAHAD +K P N++LVHG+ M
Sbjct: 425 LLSGCKQV-ILDKKVYDVNMQVKNMSFSAHADAKGILGLIKHCEPKNVMLVHGDVTRMMP 483
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEMYFNSE-----KMAKTIGRLAEKTPEVGETVSGI 493
L + + ++ TP N + ++ +E K+ + + R E+ ++ E I
Sbjct: 484 LAETIRDQFE---IQVFTPANFELNKIPLMNEDNHSIKITEDMKREIEEQ-KMNEINGLI 539
Query: 494 LVKKGFTYQIMAPDDLHIFSQL 515
+ YQI+ DL F QL
Sbjct: 540 FYNQDKQYQILR--DLEEFQQL 559
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/437 (38%), Positives = 250/437 (57%), Gaps = 16/437 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSCV ++ K I+FDCG+H YS P F I S ID ++
Sbjct: 10 VIPLGAGQDVGRSCVLVTMGSKNIMFDCGMHMGYSDHRRFPDFTYISKSGDYTSMIDCVI 69
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MT TKAI +LL D KV + E F D
Sbjct: 70 ISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKVVVERKGETDFFTSVD 129
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIA---GV--RVLYTGDYS 193
I M K+ ++ +TV+V+ ++ Y AGHVLGAAMF V + GV V+YTGDY+
Sbjct: 130 IKNCMQKVIAVNLMETVQVDAQLEIRPYYAGHVLGAAMFYVRVTDGYGVTQSVVYTGDYN 189
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
DRHL AA++ PD+ I E+TY + + RE+ F +H +S GG+VL+P F
Sbjct: 190 MTPDRHLGAAQIDGCEPDLIITETTYATTIRDSKRARERDFLKKVHDCVSGGGKVLVPVF 249
Query: 254 ALGRAQELLLILDEYWSNHPEFHN-IPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
ALGRAQELL++++ YW + + +P+Y+++ L ++ Y+ +I NE +++
Sbjct: 250 ALGRAQELLILIESYWRRMDDLCDKVPVYFSTGLTERANEYYKLFISWTNENVKSALVER 309
Query: 313 NPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
N F F HI + F+D G V+ A+PG L +G S ++F WC D KN ++PGY V
Sbjct: 310 NMFDFAHIRSWSH--SFADEPGAMVLFATPGMLHAGTSLEVFKKWCHDPKNMIIMPGYCV 367
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
GT+ +++ K + + +N+Q+ +SFSAHAD ++ N++LVHG
Sbjct: 368 AGTVGAKVLAGEKVINVDRFTKLNVNLQISNLSFSAHADAKGILQLIRASKAKNVMLVHG 427
Query: 432 ESHEMGRLKTKLMTELA 448
E +M +LK ++ EL
Sbjct: 428 EKKKMAQLKIRIERELG 444
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 239/407 (58%), Gaps = 14/407 (3%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGR 104
+ DCG+H Y+ P FD I S +D +LI+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGYNDERRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IK 162
++MTH TKAI +LL DY K++ + E F Q I M K+ ++ HQ+++V+ ++
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVERKGETNFFTSQMIKDCMKKVVPINLHQSIKVDDELE 120
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222
Y AGHVLGA MF + + V+YTGDY+ DRHL +A + + PDI I ESTY
Sbjct: 121 IKAYYAGHVLGAVMFHMRVGTESVVYTGDYNMTPDRHLGSAWIDKCRPDILITESTYATT 180
Query: 223 LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI--PI 280
+ + RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ YW E N+ PI
Sbjct: 181 IRDSKRCRERDFLKKVHETMEKGGKVLIPVFALGRAQELCILLETYW----ERMNLKAPI 236
Query: 281 YYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMAS 340
Y+++ L +K Y+ +I N++I+N F N F+F+HI P + + GP VV A+
Sbjct: 237 YFSTGLTEKANHYYKLFITWTNQKIKNTFVQRNMFEFEHIKPFDR-SYIDNPGPMVVFAT 295
Query: 341 PGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQV 400
PG L +GLS Q+F W S++ N VIPGY V GT+ +++ K++ L + + V
Sbjct: 296 PGMLHAGLSLQIFKKWASNENNMVVIPGYCVAGTVGHKVLAGQKKIELDKKNVIDVKLSV 355
Query: 401 HYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL 447
Y+SFSAHAD A ++ P N+ILVHGE +M LK K+ E
Sbjct: 356 QYMSFSAHADAAGIMQLIRTAEPRNVILVHGEGGKMEFLKQKIEQEF 402
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/433 (37%), Positives = 245/433 (56%), Gaps = 14/433 (3%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS----AIDVLLI 81
+T LGAG ++GRSCV ++ + +TI+FDCG+H +S P F + P ID ++I
Sbjct: 3 VTVLGAGQDIGRSCVVVTIQNRTIMFDCGMHMGHSDYRRFPDFKLLGPGPYTGVIDCVII 62
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFD 136
THFH+DH LPYF E+ + G ++MT TKA+ ++L DY KV + ++
Sbjct: 63 THFHMDHCGGLPYFTERCKYSGPIYMTPPTKAVLPIILQDYCKVYNERDDVGKFQHPTYN 122
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E++I M KI + +TVE+ Y AGHVLGAAM+ V + V+YTGDY+
Sbjct: 123 EENIKNCMKKIIPISIEETVEIEKDFTITPYYAGHVLGAAMYHVKVGDESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL A +P+ P + I ESTY + + R +E+ F + + + GG+VLIP FAL
Sbjct: 183 PDRHLDGAWMPKVYPSVLITESTYALLVRDCRREKERDFIESVVQCVKNGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRA EL L+LD +W +IPIY ++ L K +Y+ +I +E IR+ N F
Sbjct: 243 GRAHELCLLLDTHWEKTKL--DIPIYTSATLTHKANDIYKQFIDYTHEHIRSTLHKRNLF 300
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
F+H+ +S + S GP ++ +SPG L SG S +F WC D N + PGY V GT+
Sbjct: 301 DFRHVKQFDS-NLASLEGPMILFSSPGMLHSGPSLSIFKKWCGDPNNMVIFPGYCVRGTI 359
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
+ +++ ++ + G+ P+ M+V + FSAHAD +++ P N+ILVHG+
Sbjct: 360 GERVLNGASQIEV-GGIVYPVRMKVKNMPFSAHADQKGILALVQQCEPDNVILVHGDIMR 418
Query: 436 MGRLKTKLMTELA 448
M R+K L T L
Sbjct: 419 MKRMKNILETTLG 431
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 168/445 (37%), Positives = 250/445 (56%), Gaps = 14/445 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I S ++D ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDCVIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINR 142
FHLDH +LPYF E + G ++MT+ TKA+ L+L D+ KV E+ F I++
Sbjct: 68 FHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQFTSLHISQ 127
Query: 143 SMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M+K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRHL
Sbjct: 128 CMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H ++ GG+VLIP FALGRAQEL
Sbjct: 188 AAQIDRLELDLLITESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
++LD+YW +PIY+++ L + Y+ I +++++ +A N F FKH+
Sbjct: 248 CILLDDYWERMNL--KVPIYFSAGLTIQANLYYKILISWTSQKVKETYATRNAFDFKHVH 305
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ + GP V+ A+PG + G S ++F W + N +PGY V GT+ ++S
Sbjct: 306 NFDR-SLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGHKLMS 364
Query: 382 -EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLK 440
+P ++ L + Q+H +SFS H D K L P N+ILVHGE +M LK
Sbjct: 365 GKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMDLTKFLSPRNVILVHGEKPKMVSLK 424
Query: 441 TKLMTELADCNTKIITPKNCQSVEM 465
++ TEL P NC +V +
Sbjct: 425 ERIQTEL---RIPCYLPANCDAVHI 446
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/432 (38%), Positives = 244/432 (56%), Gaps = 15/432 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP---------SAIDVL 79
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I SAI +
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDFTSAISCV 67
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQ 138
+ITHFHLDH +LPYF E + G ++MT+ TKA+ L+L DY KV E+ + +
Sbjct: 68 IITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGEEEQYSYE 127
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
DI R M K+ +D QT++VN + Y AGHVLGAAM + ++YTGDY+ D
Sbjct: 128 DILRCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTGDYNMTPD 187
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AA++ + D+ I ESTY + ++ RE+ F +H +S+GG+VLIP FALGR
Sbjct: 188 RHLGAAQIERLKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSEGGKVLIPTFALGR 247
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQEL ++LD+YW IPIY+++ L + Y+ I +++I++ + NPF F
Sbjct: 248 AQELCILLDDYWERMNL--KIPIYFSAGLTIQANMYYKMLIGWTSQKIKDSYTVQNPFDF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KH+ +D GP V+ A+PG + G S ++F W + KN +PGY V GT+
Sbjct: 306 KHVCHFER-SFINDPGPCVLFATPGMISGGFSLEVFKRWATSDKNLVTLPGYCVAGTIGH 364
Query: 378 TIIS-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
++S +P + + + Q+H +SFS H D + L P ++ILVHGE +M
Sbjct: 365 KLMSGKPTRIDIDKDTHVDVRCQIHQLSFSPHTDSKGIMDLTEFLSPNHVILVHGEKPQM 424
Query: 437 GRLKTKLMTELA 448
LK ++ +EL
Sbjct: 425 AFLKDRIESELG 436
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 169/444 (38%), Positives = 253/444 (56%), Gaps = 16/444 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I S A+ ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSALHCVIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +LPYF E + G V+MT+ TKA+ L+L DY KV E+ F I +
Sbjct: 68 FHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQFTADHIKQ 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
++K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRHL
Sbjct: 128 CLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F V+H ++ GG+VLIP FALGRAQEL
Sbjct: 188 AAQIDRLQLDLLITESTYATTIRDSKYAREREFLKVVHKCVAGGGKVLIPTFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
L+LD+YW +PIY+++ L + Y+ I +++I+ + + N F FK++
Sbjct: 248 CLLLDDYWERMN--LKVPIYFSAGLTIQANMYYKMLIGWTSQKIKETYTSRNAFDFKNVY 305
Query: 322 PLN-SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ S+ D GP V+ A+PG + G S ++F W + N +PGY V GT+ ++
Sbjct: 306 TFDRSLLDAP--GPCVLFATPGMISGGFSLEVFKRWAPCEMNLVTLPGYCVAGTIGHKLM 363
Query: 381 S-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
S +P ++ L + Q+H +SFS H D +K L P ++ILVHGE +M L
Sbjct: 364 SGKPSKINLDKDTQIDVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASL 423
Query: 440 KTKLMTELADCNTKIITPKNCQSV 463
K ++ +EL + P NC+++
Sbjct: 424 KERIQSEL---EIQCYVPANCETL 444
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/444 (38%), Positives = 247/444 (55%), Gaps = 16/444 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ K I+FDCG+H Y P F I PS A+ ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSALSCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +L YF E + G V+MT+ TKA+ L+L DY KV E+ LF I
Sbjct: 68 FHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELFSSDQIAE 127
Query: 143 SMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QTV+V ++ Y AGHV+GAAMF + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAVDLRQTVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNMTPDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + R RE+ F +H +S GG+VLIP FALGRAQEL
Sbjct: 188 AAQIDRLRLDLLITESTYATTIRDSRYAREREFLKAVHKCVSCGGKVLIPTFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
++L++YW +PIY+++ L + A Y+ I ++I++ ++ N F FK++
Sbjct: 248 CILLEDYWERMNL--KVPIYFSAGLTIQANAYYKMLIRWTRQKIKDTYSKHNAFDFKNVQ 305
Query: 322 PL-NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
S+ D GP V+ A+PG L G S ++F W + N +PGY V GT+ ++
Sbjct: 306 KFERSMIDAP--GPCVLFATPGMLSGGFSVEVFKHWAVSENNLVSLPGYCVPGTIGHKLM 363
Query: 381 SEPKE-VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
S+ + V L + Q+H ++FS H D + L P ++ILVHGE H+M L
Sbjct: 364 SDKHDKVDLDPNTKIDVRCQIHQLAFSPHTDSKGIMDLVNFLSPKHVILVHGEKHKMASL 423
Query: 440 KTKLMTELADCNTKIITPKNCQSV 463
K K+ +EL + P N ++V
Sbjct: 424 KEKIHSELG---IQCYDPANNETV 444
>gi|156100557|ref|XP_001616006.1| cleavage and polyadenylation specifity factor protein [Plasmodium
vivax Sal-1]
gi|148804880|gb|EDL46279.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium vivax]
Length = 934
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 224/357 (62%), Gaps = 9/357 (2%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+DE DIN +M IE L+FH+ +E +KF Y AGHV+GA MF+V+I +R LYTGD
Sbjct: 173 NVLYDENDINEAMKMIETLNFHEHIEFEDVKFTAYRAGHVIGACMFLVEINNIRFLYTGD 232
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE RF ++I S ++ G+VL+P
Sbjct: 233 YSREVDRHIPIAEIPAIDVHVLICEGTYGIKVHDDRKKREVRFLNMITSILNNKGKVLLP 292
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-A 310
FALGRAQELLLI++E+W +P+ IPI+Y S +A K + +Y+T+I + +R+
Sbjct: 293 VFALGRAQELLLIMEEHWERNPQLQKIPIFYISSMATKSLCIYETFINLCGDFVRHVLNE 352
Query: 311 NSNPFKFKHISPLNSIDD-----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK + S+D + D P VVMASPG LQ+G+S+ +F+I DKK+ +
Sbjct: 353 GKNPFNFKFVKYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAPDKKSGVI 412
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY V+GTLA + +EP E L+N + ISFSAH+D+ QT TF++ L PN
Sbjct: 413 LTGYTVKGTLADELKTEP-EYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIEMLKCPN 471
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
++LVHG+ +E+ RLK KL E + TP+ Q + F ++GRL+ +
Sbjct: 472 VVLVHGDRNELNRLKNKLTEEKK--YLSVFTPELLQRLTFRFEHSDHVVSLGRLSHQ 526
Score = 124 bits (312), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 72/102 (70%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LITHFH
Sbjct: 6 IVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLITHFH 65
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
+DH+ +LPY + +T FKG+V+MT ATK+I LL DY ++ K
Sbjct: 66 MDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|156092661|ref|XP_001612477.1| cleavage and polyadenylation specifity factor protein [Plasmodium
vivax Sal-1]
gi|148801279|gb|EDL42684.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium vivax]
Length = 858
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 224/357 (62%), Gaps = 9/357 (2%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+DE DIN +M IE L+FH+ +E +KF Y AGHV+GA MF+V+I +R LYTGD
Sbjct: 173 NVLYDENDINEAMKMIETLNFHEHIEFEDVKFTAYRAGHVIGACMFLVEINNIRFLYTGD 232
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE RF ++I S ++ G+VL+P
Sbjct: 233 YSREVDRHIPIAEIPAIDVHVLICEGTYGIKVHDDRKKREVRFLNMITSILNNKGKVLLP 292
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-A 310
FALGRAQELLLI++E+W +P+ IPI+Y S +A K + +Y+T+I + +R+
Sbjct: 293 VFALGRAQELLLIMEEHWERNPQLQKIPIFYISSMATKSLCIYETFINLCGDFVRHVLNE 352
Query: 311 NSNPFKFKHISPLNSIDD-----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK + S+D + D P VVMASPG LQ+G+S+ +F+I DKK+ +
Sbjct: 353 GKNPFNFKFVKYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAPDKKSGVI 412
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY V+GTLA + +EP E L+N + ISFSAH+D+ QT TF++ L PN
Sbjct: 413 LTGYTVKGTLADELKTEP-EYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIEMLKCPN 471
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
++LVHG+ +E+ RLK KL E + TP+ Q + F ++GRL+ +
Sbjct: 472 VVLVHGDRNELNRLKNKLTEEKK--YLSVFTPELLQRLTFRFEHSDHVVSLGRLSHQ 526
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 74/106 (69%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T FKG+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 166/424 (39%), Positives = 239/424 (56%), Gaps = 19/424 (4%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGR 104
+ DCG+H ++ P F I +D ++I+HFHLDH +LPY E + G
Sbjct: 1 MLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDCVIISHFHLDHCGALPYMTEMVGYSGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IK 162
++MTH TKAI +LL DY K++ E F I M K+ ++ HQ V+V+ ++
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVDRKGETNFFTSAMIRDCMRKVVAVNLHQAVQVDDELE 120
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + PD+ I ESTY
Sbjct: 121 IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLGAAWVDKCRPDLLITESTYATT 180
Query: 223 LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYY 282
+ + RE+ F +H I +GG+VLIP FALGRAQEL ++L+ YW +PIY+
Sbjct: 181 IRDSKRCRERDFLTKVHDCIDKGGKVLIPVFALGRAQELCILLETYWDRMNL--RVPIYF 238
Query: 283 ASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS--IDDFSDVGPSVVMAS 340
A L +K Y+ +I N++IR F N F FKHI P + ID + GP VV A+
Sbjct: 239 AVGLTEKATNYYKMFITWTNQKIRKTFVQRNMFDFKHIKPFDRAFID---NPGPMVVFAT 295
Query: 341 PGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQV 400
PG L +GLS Q+F W + N ++PGY V GT+ ++S ++V L N + M V
Sbjct: 296 PGMLHAGLSLQIFKKWAPFEANMVIMPGYCVAGTVGHKVLSGARKVELENRQVVEVKMSV 355
Query: 401 HYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-DCNTKIITPKN 459
Y+SFSAHAD +++ P N++LVHGE+ +M L+ K++ E + DC P N
Sbjct: 356 QYMSFSAHADAKGIMQLIQQCEPANVLLVHGEAGKMDFLRKKILQEFSVDC----YMPAN 411
Query: 460 CQSV 463
++V
Sbjct: 412 GETV 415
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 169/448 (37%), Positives = 253/448 (56%), Gaps = 17/448 (3%)
Query: 29 LGAGNEVGRSCVYMSYKG-KTILFDCGIHPAYSGMAALPYFDEIDP-------SAIDVLL 80
LGAG EVG+SCV +++ G K ++FDCG+H + P FD + +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYTAAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LPYF E + G V+MT+ TKA+ L+L DY KV E+ + +D
Sbjct: 68 ITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEEEQYSYED 127
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I R M K+ LD QT++V+ + Y AGHVLGAAM + ++YTGDY+ DR
Sbjct: 128 ILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGDYNMTPDR 187
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA++ + D+ I ESTY + ++ RE+ F +H +S GG+VLIPAFALGRA
Sbjct: 188 HLGAAQIDRLKLDLLITESTYAKTVRDSKHAREREFLKAVHKCVSGGGKVLIPAFALGRA 247
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++LD+YW IPIY+++ L + Y+ I +++I+N + NPF FK
Sbjct: 248 QELCILLDDYWERMNL--KIPIYFSAGLTIQANMYYKMLIGWTSQKIKNSYTVHNPFDFK 305
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
H+ ++ GP V+ A+PG + G S ++F W +KN +PGY V GT+
Sbjct: 306 HVCHFER-SFINNPGPCVLFATPGMISGGFSLEVFKKWAPSEKNLVTLPGYCVAGTIGHK 364
Query: 379 IIS-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
++S +P + + + Q+H +SFS H D + L P ++ILVHGE +M
Sbjct: 365 LMSGKPTRIDIDKDTHIDVRCQIHQLSFSPHTDSKGIMDLTEFLSPSHVILVHGEKPQMA 424
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEM 465
LK ++ +EL + P N ++V +
Sbjct: 425 FLKERIESELG---MQCCYPANNETVSI 449
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 236/434 (54%), Gaps = 34/434 (7%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA----- 75
+ + +TPLGAG +VGRSC+ ++ F I P
Sbjct: 2 ANDIKVTPLGAGQDVGRSCILLN------------------------FSFISPEGPITNF 37
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDML 134
ID ++I+HFHLDH +LPY E + G ++MTH TKAI +LL D K+S + E
Sbjct: 38 IDCVIISHFHLDHCGALPYLTEMVGYNGPIYMTHPTKAISPILLEDMRKISVEKKGEVNF 97
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
F Q I M K+ + HQ++ V+ ++ Y AGHVLGAAMF + + + V+YTGDY+
Sbjct: 98 FTSQMIKDCMKKVITVTLHQSIMVDSQLEIKAYYAGHVLGAAMFWIRVGNLSVVYTGDYN 157
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
DRHL AA + + PD+ I ESTY + + RE+ F +H I +GG+VLIP F
Sbjct: 158 MTPDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHECIEKGGKVLIPVF 217
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQEL ++L+ YW +PIY+A L +K Y+ +I N++IR F N
Sbjct: 218 ALGRAQELCILLETYWERMN--LKVPIYFAVGLTEKANNYYKMFITWTNQKIRKTFVQRN 275
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F FKHI P + P VV A+PG L +GLS Q+F W ++ N ++PG+ V G
Sbjct: 276 MFDFKHIKPFDR-SYIDQAWPMVVFATPGMLHAGLSLQIFKKWAPNENNMVIMPGFCVAG 334
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+ I+S K++ N + M V Y+SFSAHAD ++ P N++LVHGE+
Sbjct: 335 TVGHKILSGQKKIEFENRQIVDVKMSVQYMSFSAHADAKGIMQLIQYCEPKNVLLVHGEA 394
Query: 434 HEMGRLKTKLMTEL 447
+M L+ K+ E
Sbjct: 395 AKMEFLRDKIKQEF 408
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/450 (36%), Positives = 249/450 (55%), Gaps = 35/450 (7%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
Q I M K+ + HQTV++ + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQIK---------------------VGSESVVYTGDYNMTP 161
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALG
Sbjct: 162 DRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 221
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+
Sbjct: 222 RAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFE 279
Query: 317 FKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+
Sbjct: 280 FKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTV 337
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +
Sbjct: 338 GHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKK 397
Query: 436 MGRLKTKLMTELADCNTKIITPKNCQSVEM 465
M LK K+ EL P N ++V +
Sbjct: 398 MEFLKQKIEQEL---RVNCYMPANGETVTL 424
>gi|389585470|dbj|GAB68201.1| cleavage and polyadenylation specifity factor protein, partial
[Plasmodium cynomolgi strain B]
Length = 936
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 223/355 (62%), Gaps = 9/355 (2%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+DE DIN +M IE L+FH+ +E +KF Y AGHV+GA MF+V+I +R LYTGD
Sbjct: 173 NVLYDENDINAAMKMIETLNFHEHIEFEDVKFTAYRAGHVIGACMFLVEINNIRFLYTGD 232
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE RF ++I S ++ G+VL+P
Sbjct: 233 YSREVDRHIPIAEIPTIDVHVLICEGTYGIKVHDDRKKREVRFLNMITSILNNKGKVLLP 292
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-A 310
FALGRAQELLLI++E+W + + IPI+Y S +A K + +Y+T+I + +R+
Sbjct: 293 VFALGRAQELLLIMEEHWERNTQLQKIPIFYISSMATKSLCIYETFINLCGDFVRHVLNE 352
Query: 311 NSNPFKFKHISPLNSIDD-----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK + S+D + D P VVMASPG LQ+G+S+ +F+I DKK+ +
Sbjct: 353 GKNPFNFKFVKYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAPDKKSGVI 412
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY V+GTLA + +EP E L+N + ISFSAH+D+ QT TF+++L PN
Sbjct: 413 LTGYTVKGTLADELKTEP-EYVLINDKLVKRRCRFEEISFSAHSDFNQTKTFIEKLKCPN 471
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
++LVHG+ +E+ RLK KL E + TP+ Q + F ++GRL+
Sbjct: 472 VVLVHGDRNELNRLKNKLTEEKK--YLSVFTPELLQRLTFRFEHSDHVVSLGRLS 524
Score = 125 bits (313), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 74/106 (69%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T FKG+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLVNRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|221059687|ref|XP_002260489.1| cleavage and polyadenylation specifity protein [Plasmodium knowlesi
strain H]
gi|193810562|emb|CAQ41756.1| cleavage and polyadenylation specifity protein,putative [Plasmodium
knowlesi strain H]
Length = 938
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 151/356 (42%), Positives = 226/356 (63%), Gaps = 9/356 (2%)
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
++L+DE DIN +M +IE L+FH+ +E +KF Y AGHV+GA MF+V+I +R LYTGD
Sbjct: 173 NVLYDENDINVAMKRIETLNFHEHIEFEDVKFTAYRAGHVIGACMFLVEINNIRFLYTGD 232
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251
YSRE DRH+ AE+P + I E TYG+++H R RE RF ++I S ++ G+VL+P
Sbjct: 233 YSREVDRHIPIAEIPTIDVHVLICEGTYGIRVHDDRKKREVRFLNMITSILNNKGKVLLP 292
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-A 310
FALGRAQELLLI++E+W + + IPI+Y S +A K + +Y+T+I + +R+
Sbjct: 293 VFALGRAQELLLIMEEHWEKNTQLQKIPIFYISSMATKSLCIYETFINLCGDFVRHVLNE 352
Query: 311 NSNPFKFKHISPLNSIDD-----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK++ S+D + D P VVMASPG LQ+G+S+ +F+I DKK+ +
Sbjct: 353 GKNPFNFKYVKYAKSLDSILNYLYQDNNPCVVMASPGMLQNGISKNIFNIIAPDKKSGVI 412
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
+ GY V+GTLA + +EP E L+N + ISFSAH+D+ QT TF+++L PN
Sbjct: 413 LTGYTVKGTLAHELKTEP-EYVLINDKPVKRRCRFEEISFSAHSDFNQTKTFIEKLKCPN 471
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
++LVHG+ +E+ RLK KL E + TP+ Q + F ++G++++
Sbjct: 472 VVLVHGDRNELNRLKNKLTEEKK--YLSVFTPELLQRLTFRFEHSDHVVSLGQISQ 525
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 74/106 (69%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
+ + I LG +EVGRSCV + ++I+ DCGIHPA+ G+ LP +D D S +D+ LI
Sbjct: 2 NNINIVCLGGASEVGRSCVIIESANRSIMLDCGIHPAFMGIGCLPIYDAYDISKVDLCLI 61
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
THFH+DH+ +LPY + +T FKG+V+MT ATK+I LL DY ++ K
Sbjct: 62 THFHMDHSGALPYLINRTRFKGKVYMTEATKSICYLLWNDYARIEK 107
>gi|393912283|gb|EJD76667.1| hypothetical protein LOAG_16429 [Loa loa]
Length = 247
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 138/214 (64%), Positives = 173/214 (80%), Gaps = 3/214 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L+ITPLG+G EVGRSC Y+++KGK IL DCGIHP SG+ ALP+ D +D +D+LL+
Sbjct: 11 DSLVITPLGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEELDLLLV 70
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV---SVEDMLFDEQ 138
THFHLDH +LP+ LEKT F+GR FMTHATKAIY++ + DY+KVSK S ML++E+
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLKVSKYGGSSDNRMLYNEE 130
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D+ +SM+KIEV+DFH+ EVNGIKFWC+ AGHVLGA MFM++IAGVR+LYTGD+SR EDR
Sbjct: 131 DLEKSMEKIEVIDFHEQKEVNGIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDR 190
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREK 232
HL AAELP SPD+ I ESTYG Q+H+ R+ REK
Sbjct: 191 HLCAAELPTVSPDVLICESTYGTQVHESRDEREK 224
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 305 bits (780), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 165/424 (38%), Positives = 241/424 (56%), Gaps = 19/424 (4%)
Query: 50 LFDCGIHPAYSGMAALPYFDEID-----PSAIDVLLITHFHLDHAASLPYFLEKTTFKGR 104
+ DCG+H YS P F I+ ++D ++ITHFHLDH SLP+ E + G
Sbjct: 1 MLDCGMHMGYSDERRFPDFSFINGGGSLTESLDCVIITHFHLDHCGSLPHMSEVVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIK 162
++MT+ TKAI +LL DY KV ++ + F Q I M K+ ++ H+ ++V N +
Sbjct: 61 IYMTYPTKAIAPVLLEDYRKVQTEFKGDKNFFTSQMIKNCMKKVIAINIHEKIDVDNELS 120
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL-PQFSPDICIIESTYGV 221
+ AGHVLGAAMF + + VLYTGD++ DRHL AA + P PD+ I ESTY
Sbjct: 121 IRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLISESTYAT 180
Query: 222 QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI--P 279
+ + RE+ F +H T+S GG+VLIP FALGRAQEL ++L+ YW E N+ P
Sbjct: 181 TIRDSKRARERDFLKKVHDTVSNGGKVLIPVFALGRAQELCILLESYW----ERMNLKYP 236
Query: 280 IYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMA 339
I+++ LA+K Y+ +I NE+I+ F N F FKHI P GP V+ +
Sbjct: 237 IFFSQGLAEKANQYYRLFISWTNEKIKRTFVERNMFDFKHIRPFEQ-SYIDSPGPMVLFS 295
Query: 340 SPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ 399
+PG L G S ++F WCSD+KN ++PG+ V T+ +IS K++ + G +N+
Sbjct: 296 TPGMLHGGQSLRVFTKWCSDEKNLIIMPGFCVANTVGAKVISGMKKIEIA-GRMREINLG 354
Query: 400 VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKN 459
V Y+SFSAHAD +++ P N++ VHGE +M LK K+ E N K+ P N
Sbjct: 355 VEYMSFSAHADAKGIMQLIRDCQPRNVMFVHGEDAKMEFLKEKVEKEF---NLKVFKPAN 411
Query: 460 CQSV 463
+++
Sbjct: 412 GETI 415
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 162/424 (38%), Positives = 243/424 (57%), Gaps = 15/424 (3%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGR 104
+ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IK 162
++MTH T+AI +LL DY K++ E F Q I M K+ + HQTV+V+ ++
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATT 180
Query: 223 LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYY 282
+ + RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+
Sbjct: 181 IRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KVPIYF 238
Query: 283 ASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASP 341
++ L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+P
Sbjct: 239 STGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATP 296
Query: 342 GGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVH 401
G L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV
Sbjct: 297 GMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVE 356
Query: 402 YISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
Y+SFSAHAD + + P +++LVHGE+ +M LK K+ EL P N +
Sbjct: 357 YMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVNCYMPANGE 413
Query: 462 SVEM 465
+V +
Sbjct: 414 TVTL 417
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 162/424 (38%), Positives = 243/424 (57%), Gaps = 15/424 (3%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGR 104
+ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IK 162
++MTH T+AI +LL DY K++ E F Q I M K+ + HQTV+V+ ++
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATT 180
Query: 223 LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYY 282
+ + RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+
Sbjct: 181 IRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL--KVPIYF 238
Query: 283 ASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASP 341
++ L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+P
Sbjct: 239 STGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATP 296
Query: 342 GGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVH 401
G L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV
Sbjct: 297 GMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVE 356
Query: 402 YISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
Y+SFSAHAD + + P +++LVHGE+ +M LK K+ EL P N +
Sbjct: 357 YMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGE 413
Query: 462 SVEM 465
+V +
Sbjct: 414 TVTL 417
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 169/475 (35%), Positives = 260/475 (54%), Gaps = 23/475 (4%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-------IDVLLITHFHLDHAASLPYFLEKTTFK 102
+ DCG+H Y+ P F I +D ++I+HFHLDH +LPY E +
Sbjct: 1 MLDCGMHMGYNDERRFPDFTYITDEEGDKLTDHLDCVIISHFHLDHCGALPYMSEMVGYD 60
Query: 103 GRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG- 160
G ++MTH TKAI +LL DY K++ + E+ F + I M K+ V++ H+T +V+
Sbjct: 61 GPIYMTHPTKAICPILLEDYRKITVERKGEENFFTSEMIKNCMKKVVVVNLHETKQVDEE 120
Query: 161 IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYG 220
++ Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + PD+ I ESTY
Sbjct: 121 LEIKAYYAGHVLGAAMFHIKVGQQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITESTYA 180
Query: 221 VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPI 280
+ + RE+ F +H + +GG+VLIP FALGRAQEL ++L+ YW +PI
Sbjct: 181 TTIRDSKRCRERDFLKKVHDCVEKGGKVLIPVFALGRAQELCILLESYWDRMNI--KVPI 238
Query: 281 YYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS--IDDFSDVGPSVVM 338
Y++ L +K Y+ +I +++I+ F N F+FKHI P + ID + GP VV
Sbjct: 239 YFSLGLTEKANHYYKLFITWTSQKIKKTFVQRNMFEFKHIKPFDRAFID---NPGPMVVF 295
Query: 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNM 398
A+PG L +GLS Q+F W ++ N ++PGY V GT+ I++ +++ L N + +
Sbjct: 296 ATPGMLHAGLSLQIFKKWAPNELNMVIMPGYCVAGTVGHKILNGARKLELENKQILDVKL 355
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA-DC----NTK 453
V Y+SFSAHAD + + P N++LVHGE+ +M LK K+ E DC N +
Sbjct: 356 SVQYMSFSAHADAKGIMQLISQCEPRNVMLVHGEAAKMDFLKNKIQQEFGIDCYKPANGE 415
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVG--ETVSGILVKKGFTYQIMAP 506
+T + ++ + + + + P+ + G LV +G QI+ P
Sbjct: 416 SVTIETTHNIHVDIPLSLLKREASKTGLLPPDAKRPRVLHGALVMRGNRLQIIDP 470
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 163/426 (38%), Positives = 244/426 (57%), Gaps = 19/426 (4%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGR 104
+ DCG+H ++ P F I + +D ++I+HFHLDH +LPYF E + G
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 105 VFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IK 162
++MTH T+AI +LL DY K++ E F Q I M K+ + HQTV+V+ ++
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 163 FWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATT 180
Query: 223 LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI--PI 280
+ + RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W E N+ PI
Sbjct: 181 IRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFW----ERVNLKAPI 236
Query: 281 YYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMA 339
Y+++ L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A
Sbjct: 237 YFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFA 294
Query: 340 SPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ 399
+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQ
Sbjct: 295 TPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQ 354
Query: 400 VHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKN 459
V Y+SFSAHAD + + P +++LVHGE+ +M LK K+ E P N
Sbjct: 355 VEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEF---RVNCYMPAN 411
Query: 460 CQSVEM 465
++V +
Sbjct: 412 GETVTL 417
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/447 (36%), Positives = 245/447 (54%), Gaps = 18/447 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F + S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKRIMFDCGMHMGCDDHNRYPDFSLVSKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FH+DH +LPYF E + G ++M++ TKA+ L+L DY +V ED LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEDELFTTAHIAN 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKVGDAAIVYTGDYNMTTDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H ++ GG+ LIP+FALGRAQEL
Sbjct: 188 AAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
++LD+YW E NI PIY++S L + Y+ I ++ ++ + NPF FK+
Sbjct: 248 CMLLDDYW----ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKN 303
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ + GP V+ A+PG L +G S ++F W N +PGY V GT+ +
Sbjct: 304 VKDFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKL 362
Query: 380 IS-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+S +P V L NG + ++H ++FS H D K L P N++LVHGE M
Sbjct: 363 MSGKPTTVDLYNGTKVDVRCKIHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMI 422
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEM 465
LK K+ +EL + P N ++V +
Sbjct: 423 LKDKITSEL---DIPCFVPANGETVSV 446
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 237/403 (58%), Gaps = 15/403 (3%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDML 134
+D ++I+HFHLDH +LPY E + G ++MTH TKAI +LL DY K++ + E
Sbjct: 130 LDCVIISHFHLDHCGALPYMTEIVGYDGPIYMTHPTKAICPILLDDYRKITVERRGEQNF 189
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
F + I R M K++ + HQTV+V+ ++ + AGHVLGAAMF++ + VLYTGDY+
Sbjct: 190 FTSEMIYRCMSKVKCVYVHQTVKVDDELELQAFYAGHVLGAAMFLIRVGSQSVLYTGDYN 249
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
DRHL AA + + PDI I ESTY + + RE+ F + IH+ + GG+VLIP F
Sbjct: 250 MTPDRHLGAAWVSRCCPDILITESTYATTIRDSKRAREREFLEKIHARVEAGGKVLIPVF 309
Query: 254 ALGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFAN 311
ALGRAQEL ++L+ YW E NI PIY++ +A+K Y+ +I N++I+ F
Sbjct: 310 ALGRAQELCILLETYW----ERMNISVPIYFSMGMAEKANEYYKLFISWTNQKIKETFVK 365
Query: 312 SNPFKFKHISPL-NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
N F+FKHI PL I D + GP VV A+PG L +G S +F W D++N VIPGY
Sbjct: 366 RNMFEFKHIKPLGQGIVD--NPGPMVVFATPGMLHAGQSLHIFRKWAPDERNMVVIPGYC 423
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
V GT+ I++ K + + +NM+V Y+SFSAHAD + P N++LVH
Sbjct: 424 VAGTVGYKILNGVKRLEF-DRQALDVNMRVEYLSFSAHADARGIMQLISHCQPRNVLLVH 482
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMA 473
GE+ +M LK K+ E + P N + V + S+ +A
Sbjct: 483 GEASKMDFLKAKIEQEFG---LPCLKPANGEIVHVKTESQFVA 522
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 243/445 (54%), Gaps = 18/445 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FH+DH +LPYF E + G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H ++ GG+ LIP+FALGRAQEL
Sbjct: 188 AAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
++LD+YW E NI PIY++S L + Y+ I ++ ++ + NPF FK+
Sbjct: 248 CMLLDDYW----ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKN 303
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KT 378
+ + GP V+ A+PG L +G S ++F W N +PGY V GT+ K
Sbjct: 304 VKDFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKL 362
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+ +P V L NG + +VH ++FS H D K L P N++LVHGE M
Sbjct: 363 MAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMI 422
Query: 439 LKTKLMTELADCNTKIITPKNCQSV 463
LK K+ +EL + P N ++V
Sbjct: 423 LKEKITSEL---DIPCFVPANGETV 444
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 243/445 (54%), Gaps = 18/445 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FH+DH +LPYF E + G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H ++ GG+ LIP+FALGRAQEL
Sbjct: 188 AAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
++LD+YW E NI PIY++S L + Y+ I ++ ++ + NPF FK+
Sbjct: 248 CMLLDDYW----ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKN 303
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KT 378
+ + GP V+ A+PG L +G S ++F W N +PGY V GT+ K
Sbjct: 304 VKDFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKL 362
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+ +P V L NG + +VH ++FS H D K L P N++LVHGE M
Sbjct: 363 MAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMI 422
Query: 439 LKTKLMTELADCNTKIITPKNCQSV 463
LK K+ +EL + P N ++V
Sbjct: 423 LKEKITSEL---DIPCFVPANGETV 444
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 169/456 (37%), Positives = 255/456 (55%), Gaps = 22/456 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV + GK I+FDCG+ ++ + P F +I S A+D ++ITH
Sbjct: 8 LGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +L YF E + G V+MT+ KA+ L+L DY KV E+ F I
Sbjct: 68 FHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEEEQFTSDHIAE 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QTV+V+ ++ Y AGHV+GAAMF V + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H +S GG+VLIP FALGRAQEL
Sbjct: 188 AAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHIS 321
++LD+YW +PIY++S L + ++ I +++I++ ++ N F FK++
Sbjct: 248 RILLDDYWERMNL--KVPIYFSSGLTIQANTYHKMLIGWTSQKIKDTYSTHNAFDFKNVH 305
Query: 322 PL-NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
S+ D GP V+ A+PG L G S ++F W +KN +PGY + GT+ +
Sbjct: 306 KFERSMLDAP--GPCVLFATPGMLIGGFSLEVFKHWAPSEKNLVALPGYCMAGTVGHRLT 363
Query: 381 S-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
S +P +V + Q+H ++FSAH D +K L P +++LVHG+ +M L
Sbjct: 364 SGKPTKVDTDPDTQIDVRCQIHQLAFSAHTDSKGIMDLVKFLSPKHVMLVHGDKPKMVSL 423
Query: 440 KTKLMTELA-----DCNTKIITPKNCQSVEMYFNSE 470
K ++ +EL N +I+T + Q Y N+E
Sbjct: 424 KERIDSELGIPCSHPANNEIVTISSTQ----YVNAE 455
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 161/430 (37%), Positives = 241/430 (56%), Gaps = 12/430 (2%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG ++G+SC+ ++ K KTI+FDCGIH Y+ LP FD + + +D+++
Sbjct: 3 VIPLGAGQDIGKSCIVVTIKNKTIMFDCGIHLGYNDSRKLPNFDYFNENHHGRRPVDIIV 62
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV--SKVSVEDMLFDEQ 138
I+HFH+DH SLPYF+E T F G +FMTH TKA ++L D K+ +K +E L+ +
Sbjct: 63 ISHFHIDHCGSLPYFVETTQFNGLIFMTHPTKAALPIVLEDCKKIFENKNQMEKPLYTTE 122
Query: 139 DINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
IN + K+ L+ +T E+ Y AGHV+GAAMF V V+YTGD+S D
Sbjct: 123 QINNCLSKVIALNMEETYEIEQEFIIRPYYAGHVIGAAMFFVRYLDETVVYTGDFSTIPD 182
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
R+LRAA + PD+ I ESTYG + R +E+ +H TI GG+VLIP FALGR
Sbjct: 183 RYLRAATIDCLYPDLLITESTYGNIVRDLRKSKEREMIMAVHKTIDIGGKVLIPIFALGR 242
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQE+ L+L Y ++PIY+ + L K +Y + NE + +
Sbjct: 243 AQEICLLLKNYCERIQ--LSVPIYFTTGLIDKINDIYLKFASYTNESLEQPLKIRSILNS 300
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
K + P + + GP ++ A+P L +G S +F C D KN ++PGY +GT+ +
Sbjct: 301 KFVKPFEK-EYLNSPGPMIIFATPAMLINGPSLNIFKSICHDSKNTIILPGYCSKGTIGE 359
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
II+ K + + + +NM+V+ IS S HAD +++ P N++LVHG+ +M
Sbjct: 360 KIINGLKRIEIGKNIYD-INMKVYNISLSGHADMTGILKIIEQCKPSNVMLVHGDKGKMN 418
Query: 438 RLKTKLMTEL 447
LK K+ E
Sbjct: 419 ILKEKIKVEF 428
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/440 (37%), Positives = 253/440 (57%), Gaps = 24/440 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLLITH 83
LGAG +VGRSCV ++ KTI+FDCG+H Y+ P F I + ID ++I+H
Sbjct: 1 LGAGQDVGRSCVIVTIGRKTIMFDCGMHMGYNDERRFPDFKFISKNGQFTQTIDCVIISH 60
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML----FDEQD 139
FHLDH +LPYF E + G ++MT+ TKAI +LL D+ +V D L F +D
Sbjct: 61 FHLDHCGALPYFTEVCGYDGPIYMTYPTKAIAPILLEDFRRVMVDRKGDNLNQGFFSSED 120
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMV-DIA-GVRVLYTGDYSREE 196
+ + K++ L+ HQT+ ++ ++ Y AGHVLGAAMF V D+A G V+YTGDY+
Sbjct: 121 VKNCIKKVQPLNLHQTIILDDELEIKPYYAGHVLGAAMFYVKDLATGASVVYTGDYNMTA 180
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI-SQGGRVLIPAFAL 255
DRHL +A + + PD+ I E+TY + ++ RE+ F ++ T+ ++ G+VLIP FAL
Sbjct: 181 DRHLGSATIDRCRPDLLITETTYATTIRDSKSSRERDFCKQVYDTVVNKKGKVLIPVFAL 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--N 313
GR QEL ++L+ YW ++PIY+++ + +K YQ YI NE+I+ + N
Sbjct: 241 GRVQELCILLETYWERKNLGKSVPIYFSAGMVEKANYYYQLYINWTNEKIKTTLFDQKRN 300
Query: 314 PFKFKHISPLNSIDDF--SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
F F +I S + F + GP V+ A+PG L +G+S ++F W + N ++PGY V
Sbjct: 301 LFNFSNIQ---SFERFLMDNPGPMVLFATPGMLHAGMSLEVFKKWAPGENNKVILPGYCV 357
Query: 372 EGTLAKTIIS----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
EGT+ ++ + ++ + + + +V ISFSAHAD ++ P N++
Sbjct: 358 EGTVGNKVLRNKDLKSSKIEIDSRTVIDMRCEVKAISFSAHADAKGILQLIRTAQPKNVM 417
Query: 428 LVHGESHEMGRLKTKLMTEL 447
LVHGE +M K K+ +E
Sbjct: 418 LVHGERDKMAFFKKKIESEF 437
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/478 (36%), Positives = 247/478 (51%), Gaps = 45/478 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLL 80
+ PLGAG +VGRSCV +S K I+FDCG+H Y P F I + +D ++
Sbjct: 5 VVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKVLDCVI 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHA---------------------------TKA 113
ITHFHLDH +LPYF E + G ++MT TKA
Sbjct: 65 ITHFHLDHCGALPYFTEICGYDGPIYMTVCYKCLISISIYKYNYNSLTFMLQLIQLPTKA 124
Query: 114 IYKLLLTDYVK-VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHV 171
I +LL DY K V E F Q I M K+ + HQT++V+ + Y AGHV
Sbjct: 125 IVPILLEDYRKIVVDRKGETNFFTPQMIKDCMKKVIPVALHQTIDVDDELSIKPYYAGHV 184
Query: 172 LGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRE 231
LGAAMF + V+YTGDY+ DRHL +A + +P + I E+TY + + RE
Sbjct: 185 LGAAMFYCKVGEESVVYTGDYNMTPDRHLGSAWIDAVNPTLLITETTYATTIRDSKRGRE 244
Query: 232 KRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCM 291
+ F +H + +GG+VLIP FALGR QEL +++D YW ++PIY++ LA+K
Sbjct: 245 RDFLKRVHECVEKGGKVLIPVFALGRVQELCILIDTYWEQMG--LSVPIYFSEGLAEKAN 302
Query: 292 AVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSR 350
Y+ +I N++I+ F N F FKHI P + + D GP V+ A+PG L +G S
Sbjct: 303 FYYKLFIGWTNQKIKQTFVKRNMFDFKHIKPFDRM--LVDAPGPMVLFATPGMLHAGASL 360
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISE---PKEVTLMNGLTAPLNMQVHYISFSA 407
++F W + N +IPGY V GT+ ++S P+ V + T + ++H +SFSA
Sbjct: 361 EVFKKWAPSELNMTIIPGYCVVGTVGNKLLSNASGPQMVEIDKKTTLEVKCKIHNLSFSA 420
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
HAD +K P N++LVHGE +M L K+ D N P N +V +
Sbjct: 421 HADAKGIMQLIKMSQPKNVLLVHGEKEKMRFLSDKIS---KDFNIPCYFPANGVTVNI 475
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/393 (39%), Positives = 231/393 (58%), Gaps = 10/393 (2%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDML 134
+D ++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E
Sbjct: 40 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 99
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
F Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 100 FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 159
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP F
Sbjct: 160 MTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVF 219
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N
Sbjct: 220 ALGRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRN 277
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 278 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 335
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE
Sbjct: 336 GTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGE 395
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ +M LK K+ EL P N ++V +
Sbjct: 396 AKKMEFLKQKIEQEL---RVSCYMPANGETVTL 425
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 159/431 (36%), Positives = 240/431 (55%), Gaps = 15/431 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDHRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHLDHIGALPYFTEICGYHGPIYMTYPTKALAPFMLEDYRKVTMDQRGEEEQYSYED 127
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I R M K+ +D QT++V+ + Y AGHV+GAAM + ++YTGDY+ DR
Sbjct: 128 ILRCMKKVIPMDLKQTIQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDR 187
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA++ D+ I ESTY + ++ RE+ F +H +S GG+VLIP FALGRA
Sbjct: 188 HLGAAQIDHLKLDLLITESTYAKTIRDSKHAREREFLKAVHKCVSGGGKVLIPTFALGRA 247
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++LD+YW +PIY+++ L + Y+ I +++I++ A NPF FK
Sbjct: 248 QELCMLLDDYWERMDL--KVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHAVHNPFDFK 305
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-K 377
H+ ++ GP V+ A+PG + G S + F W +KN +PGY V GT+ K
Sbjct: 306 HVCHFER-SFINNPGPCVLFATPGMISGGFSLEAFKKWAPSEKNLITLPGYCVSGTIGHK 364
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
+ +P + + + + Q+H ++FS H D + L P ++ILVHGE +M
Sbjct: 365 LMCGKPTRIDYKD-IHIDVRCQIHQLAFSPHTDSKGIMDLTEFLSPKHVILVHGEKPQMA 423
Query: 438 RLKTKLMTELA 448
LK ++ +EL
Sbjct: 424 FLKERIESELG 434
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/448 (36%), Positives = 244/448 (54%), Gaps = 18/448 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFH+DH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYED 127
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I R M K+ +D QTV+V+ + Y AGHV+GAAM + ++YTGDY+ DR
Sbjct: 128 ILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDR 187
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA++ + D+ I ESTY + + RE+ F +H +S GG+VLIP FALGRA
Sbjct: 188 HLGAAQIDRLKLDVLITESTYAKSIRDSKPAREREFLKAVHKCVSGGGKVLIPTFALGRA 247
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++LD+YW +PIY+++ L + Y+ I +++I++ NPF FK
Sbjct: 248 QELCMLLDDYWERMGL--KVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVHNPFDFK 305
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-K 377
H+ ++ GP V+ A+PG + G S + F W +KN +PGY V GT+ K
Sbjct: 306 HVCHFER-SFINNPGPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHK 364
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
+ +P V + + Q+H ++FS H D + L P N+ILVHGE +M
Sbjct: 365 LMCGKPTRVDYED-THIDVRCQIHQLAFSPHTDSKGIMDLTEFLSPKNVILVHGEKPQMA 423
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEM 465
LK ++ +EL P N +SV +
Sbjct: 424 FLKERIESELG---MPCYYPGNNESVSI 448
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 161/444 (36%), Positives = 241/444 (54%), Gaps = 39/444 (8%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF----DEIDP----SA 75
+ +TPLGAG +VGRSC+ + K ++ DCG+H Y P F +DP S
Sbjct: 3 ITVTPLGAGQDVGRSCILVRIYEKVVMLDCGMHMGYKDDRRYPDFTLISSSLDPVVINSL 62
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV---------- 125
+DV++I+H+HLDH +LPYF EK + G + MT+ TKA+ +LL D KV
Sbjct: 63 VDVVVISHYHLDHCGALPYFTEKIGYSGPIIMTYPTKAVSPILLADCCKVMEQKNILSKF 122
Query: 126 -SKVSVE--DML-------FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAA 175
S ++ E D+L F D+ + M+K+ + HQT+ VNGI Y AGHVLGA+
Sbjct: 123 GSDINTESTDILKPVDPQHFSVGDVWKCMEKVTAIQLHQTISVNGINITPYYAGHVLGAS 182
Query: 176 MFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFT 235
MF V++ ++YTGDY+ DRHL A + + PD+ + ESTY + R E+ F
Sbjct: 183 MFHVEVGNESIVYTGDYNMVRDRHLGPASIKKLFPDVLLSESTYATYIRPSRRSTERIFC 242
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
+++ + +GG+VLIP FA+GRAQEL ++L+ +W + PIY+ + +K YQ
Sbjct: 243 EMVLQCLEKGGKVLIPVFAVGRAQELCILLEFFWRRMQLRY--PIYFGGAMTEKSSLYYQ 300
Query: 296 TYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI 355
Y N + + F F H+ P + ++ GP+V+ A+PG L +GLS Q F
Sbjct: 301 LYTNWTNTALSDDL-----FSFPHVLPYDR-SVLTNTGPAVLFATPGMLHAGLSLQAFKC 354
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTL---MNGLTAPLNMQVHYISFSAHADYA 412
W D N +IPG+ V GTL II+ K + L + + V Y+SFS+HAD
Sbjct: 355 WAPDPNNLTIIPGFCVAGTLGARIIAGAKRIILDPKDPSSSIDIRCDVKYLSFSSHADSI 414
Query: 413 QTSTFLKELMPPNIILVHGESHEM 436
+ ++ + P NI+ +HGE M
Sbjct: 415 GIQSLIQHIEPDNIVFLHGERQGM 438
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 241/431 (55%), Gaps = 17/431 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV ++ GK I+FDCG+H Y P F I S + ++ITH
Sbjct: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVLSCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +LPYF E + G ++MT+ T A+ + L DY KV E F I
Sbjct: 68 FHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIME 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
+ K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRHL
Sbjct: 128 CLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H+ ++ GG+VLIP FALGRAQEL
Sbjct: 188 AAQIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
++LD+YW E N+ PIY ++ L + Y+ I +++++ + N F FK+
Sbjct: 248 CVLLDDYW----ERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKN 303
Query: 320 ISPLN-SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+ + S+ D GP V+ A+PG + SG S ++F W K N +PGY V GT+
Sbjct: 304 VQKFDRSMIDAP--GPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHK 361
Query: 379 IIS-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
++S +P ++ L + QVH ++FS H D +K L P ++ILVHGE +M
Sbjct: 362 LMSGKPTKIDLDKVTQIDVQCQVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMA 421
Query: 438 RLKTKLMTELA 448
LK ++ +EL
Sbjct: 422 VLKERIHSELG 432
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 242/448 (54%), Gaps = 46/448 (10%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ I PLGAG EVGRSC+ ++ GK ++ DCG+H ++ P F I ID
Sbjct: 3 EIKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDFID 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MT TKAI +LL D+ KV K + +F
Sbjct: 63 CVIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLEDFRKVQVKYRNDPFIFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
I M+K++ + H+ + GD++
Sbjct: 123 SNMIKDCMNKVKTISLHEEL--------------------------------MGDFNMTP 150
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AE+ + PD+ I ESTY + + RE+ F +H I+ GG+VLIP FALG
Sbjct: 151 DRHLGPAEIDRCRPDVLISESTYATTIRDSKRARERDFLKKVHDCINNGGKVLIPVFALG 210
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQEL ++L+ YW +IPIY + +A+K + Y+ ++ +E+I+ F N F
Sbjct: 211 RAQELCILLESYWERMN--LSIPIYVSKGMAEKAVDYYKLFVTWTSEKIKKTFVKRNMFD 268
Query: 317 FKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKH+ P D F+D GP VV A+PG L SG S ++F W +++KN ++PGY V+GT+
Sbjct: 269 FKHVLPFE--DSFADTPGPMVVFATPGMLHSGQSLKIFKKWATNEKNMVIMPGYCVQGTV 326
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
+I+ +++ L NG T + + V Y+SFSAHAD ++ P +++ VHGE +
Sbjct: 327 GSKLIAGVRKLDLENGATLEVKLSVEYMSFSAHADSKGIVQLIRNCDPRHVLFVHGEDSK 386
Query: 436 MGRLKTKLMTELADCNTKIITPKNCQSV 463
M LK K+ L+ ++ P+N Q+V
Sbjct: 387 MEFLKQKVERMLS---IPVLKPRNGQNV 411
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 242/445 (54%), Gaps = 18/445 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FH+DH +LPYF E + G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H ++ GG+ LIP+FALGRAQEL
Sbjct: 188 AAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
++LD+YW E NI PIY++S L + Y+ I ++ ++ + NPF FK+
Sbjct: 248 CMLLDDYW----ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKN 303
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KT 378
+ + GP V+ A PG L +GLS ++F W N + GY V GT+ K
Sbjct: 304 VKDFDR-SLIHAPGPCVLFAIPGMLCAGLSLEVFKHWAPSPLNLVALLGYSVAGTVGHKL 362
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+ +P V L NG + +VH ++FS H D K L P N++LVHGE M
Sbjct: 363 MAGKPTTVDLHNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMI 422
Query: 439 LKTKLMTELADCNTKIITPKNCQSV 463
LK K+ +EL + P N ++V
Sbjct: 423 LKEKITSEL---DIPCFVPANGETV 444
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/420 (36%), Positives = 234/420 (55%), Gaps = 13/420 (3%)
Query: 53 CGIHPAYSGMAALPYFDEIDPSA-----IDVLLITHFHLDHAASLPYFLEKTTFKGRVFM 107
G+H YS P F I + ID ++I+HFHLDH +LP+F E + G ++M
Sbjct: 10 AGMHMGYSDARRFPDFSYISKTGNFTDIIDAVIISHFHLDHCGALPFFTEMLGYDGPIYM 69
Query: 108 THATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWC 165
TH TKAI +LL DY K++ + E F I M K+ + HQT++V+ ++
Sbjct: 70 THPTKAICPILLEDYRKITVERKGETNFFTSAMIKNCMKKVHAVSLHQTIKVDDELEIKA 129
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF V + V+YTGDY+ DRHL +A + + PD+ + ESTY +
Sbjct: 130 YYAGHVLGAAMFYVRVGQESVVYTGDYNMTPDRHLGSAWIDKVRPDVLVTESTYATTIRD 189
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H + GG V+IP FALGRAQEL ++++ YW ++PIY+++
Sbjct: 190 SKRSRERDFLTKVHECVLNGGNVIIPVFALGRAQELCILIESYWDRMG--LDVPIYFSTG 247
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQ 345
L ++ Y+ +I N++I++ F+ N F FKHI N + GP V+ A+PG L
Sbjct: 248 LTERATEFYKLFINWTNQKIKSTFSQRNMFDFKHIKTWNR-NYIDQPGPKVLFATPGMLN 306
Query: 346 SGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISF 405
+G S ++F W D KN ++PG+ V GT+ ++ K + + +N+QV +SF
Sbjct: 307 AGTSLEVFKKWAPDPKNMVIMPGFCVAGTVGSKVLLGQKVIEIDKFTRFEVNLQVRNLSF 366
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
SAHAD +++ P N++LVHGE +M L +K+M E A P N S++M
Sbjct: 367 SAHADAKGIMQLIRQCEPRNVVLVHGERGKMNFLSSKIMKEFA---IPCYMPANGCSIKM 423
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 164/453 (36%), Positives = 246/453 (54%), Gaps = 40/453 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI----DP----SAID 77
I PLGAG +VGRSC+ KT++FDCG+H + P F I DP ID
Sbjct: 7 IIPLGAGQDVGRSCIIAKIGSKTVMFDCGMHMGFKDERKYPDFRLISATLDPLIINEYID 66
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------SKVSV 130
+++I+H+HLDH +LP+F EK +KG + MT+ TK++ +LL+D K+ K +V
Sbjct: 67 LVIISHYHLDHCGALPFFTEKIGYKGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQKTNV 126
Query: 131 ------------EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
E F D+ M+K++ + HQT+ ++GIK Y AGHVLGA+MF
Sbjct: 127 DVAPPNETVYNNEYGFFTVSDVWSCMEKVKAIQLHQTIVISGIKITPYYAGHVLGASMFH 186
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
V ++ ++YTGD++ DRHL A +P+ P + I ESTY + R E+ F +++
Sbjct: 187 VQVSDESIVYTGDFNMVRDRHLGPALIPKLLPSLLISESTYATYIRPSRRSTERTFCEMV 246
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
+S + +GG+VLIP FA+GRAQEL ++L+ YW PI++ + +K + YQ +
Sbjct: 247 YSCLKRGGKVLIPVFAIGRAQELCILLEIYWRRMQI--RFPIFFGGSMTEKANSYYQLFT 304
Query: 299 LSMNERIRNQFANSNPFKFKHISPLN-SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
N + + N F F H+ P + SI S GP+V+ A+PG L +GLS Q F +W
Sbjct: 305 NWTNTPLAD-----NIFTFPHVLPYDKSILTLS--GPAVLFATPGMLHTGLSLQAFKMWA 357
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYISFSAHADYAQT 414
D N +IPG+ V GT+ II+ K V + + V Y+SFS+HAD
Sbjct: 358 PDSNNLTIIPGFCVSGTIGSKIINGAKRVYIDQKDPTTCIEVRCNVKYLSFSSHADSIGI 417
Query: 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTEL 447
+ + P +I VHGE H M L + + +E
Sbjct: 418 QSLISHSEPQSIAFVHGERHGMLNLASFINSEF 450
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 162/453 (35%), Positives = 245/453 (54%), Gaps = 40/453 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI----DP----SAID 77
I PLGAG +VGRSC+ KT++FDCG+H + P F I DP ID
Sbjct: 5 IIPLGAGQDVGRSCIIAKIGSKTVMFDCGMHMGFKDERKYPDFRLISATLDPLIINEYID 64
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV------- 130
+++I+H+HLDH +LP+F EK +KG + MT+ TK++ +LL+D K+ + +
Sbjct: 65 LVIISHYHLDHCGALPFFTEKIGYKGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQKTNA 124
Query: 131 ------------EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178
E F D+ M+K++ + HQT+ ++GIK Y AGHVLGA+MF
Sbjct: 125 DVVPPNETVYNNEYGFFTVSDVWSCMEKVKAIQLHQTIVISGIKITPYYAGHVLGASMFH 184
Query: 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVI 238
V ++ ++YTGD++ DRHL A +P+ P + I ESTY + R E+ F +++
Sbjct: 185 VQVSDESIVYTGDFNMVRDRHLGPALIPKLLPSLLISESTYATYIRPSRRSTERTFCEMV 244
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
+S + +GG+VLIP FA+GRAQEL ++L+ YW PI++ + +K + YQ +
Sbjct: 245 YSCLKRGGKVLIPVFAIGRAQELCILLEIYWRRMQI--RFPIFFGGSMTEKANSYYQLFT 302
Query: 299 LSMNERIRNQFANSNPFKFKHISPLN-SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
N + + N F F H+ P + SI S GP+V+ A+PG L +GLS Q F +W
Sbjct: 303 NWTNTPLAD-----NIFTFPHVLPYDKSILTLS--GPAVLFATPGMLHTGLSLQAFKMWA 355
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYISFSAHADYAQT 414
D N +IPG+ V GT+ II+ K V + + V Y+SFS+HAD
Sbjct: 356 PDSNNLTIIPGFCVSGTIGSKIINGAKRVYIDQKDPTTCIEVRCNVKYLSFSSHADSIGI 415
Query: 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTEL 447
+ + P +I VHGE H M L + + +E
Sbjct: 416 QSLISHSEPQSIAFVHGERHGMLNLASFINSEF 448
>gi|390365684|ref|XP_003730872.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 216
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/209 (60%), Positives = 163/209 (77%), Gaps = 1/209 (0%)
Query: 11 KRRDAPV-SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++ DA + E D+LI+ PLGAG EVGRSC+ + +KGK I+ DCGIHP GM +LPYFD
Sbjct: 5 RKPDAQIPEEESDRLIVRPLGAGQEVGRSCIMLEFKGKKIMLDCGIHPGREGMDSLPYFD 64
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
IDP ID+LL++HFHLDH LPYFL+ T F+GRVFMTHA+KAIY+ L+DYVKVS +S
Sbjct: 65 LIDPEEIDLLLVSHFHLDHCGGLPYFLKNTQFRGRVFMTHASKAIYRWNLSDYVKVSNLS 124
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
E ML+ + D+ SMD+IE ++FHQ V++NGI+F CY AGHVLGA MF+++IAGV++LYT
Sbjct: 125 AERMLYTDADLQASMDRIETVNFHQEVDINGIRFSCYHAGHVLGACMFLIEIAGVKILYT 184
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIEST 218
GD+SR+EDRHL AE+P PDI I S+
Sbjct: 185 GDFSRQEDRHLMQAEIPNVKPDILITVSS 213
>gi|440493393|gb|ELQ75870.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) [Trachipleistophora hominis]
Length = 801
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 128/233 (54%), Positives = 167/233 (71%), Gaps = 5/233 (2%)
Query: 211 DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWS 270
D+ I ESTYGVQ H PR RE+RFT +++ +++GG+ L+P FALGRAQELLLIL++YW
Sbjct: 266 DVLICESTYGVQCHLPREERERRFTQIVNDIVTRGGKCLLPVFALGRAQELLLILEDYWE 325
Query: 271 NHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFS 330
+P+ HN+PIYYAS LA +C+++YQ Y MN +I+ + F FKHI L S+D+
Sbjct: 326 RNPQLHNVPIYYASALANRCLSIYQAYTHMMNLKIK-----KDAFTFKHIRNLKSVDNHL 380
Query: 331 DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMN 390
VVMASPG LQSGLSR+LF+ WC D N VIPGY V+GTLAK I++EPKE+ MN
Sbjct: 381 IKNACVVMASPGMLQSGLSRELFESWCEDANNGTVIPGYCVQGTLAKEIMTEPKEIVAMN 440
Query: 391 GLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKL 443
G LNM+V YISFSAH DY Q ++F+++ P ++LVHGE +EM RLK L
Sbjct: 441 GHRLRLNMRVEYISFSAHVDYVQNTSFIEKCTPMIVMLVHGEVNEMMRLKAAL 493
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 102/183 (55%), Positives = 133/183 (72%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D L I PLGAGNEVGRSC++++YK +IL DCG+HPAY+G A+LP+ D I+ S +D + I
Sbjct: 5 DNLTIMPLGAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTASLPFLDLINLSTVDAVFI 64
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
THFHLDHA +LPY EKT F G+VFMTH TKAI + LL DY+++ + E + E+D++
Sbjct: 65 THFHLDHAGALPYLTEKTAFTGKVFMTHPTKAILRWLLNDYIRIINTNTEIDFYTEKDLS 124
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
DKI +D++QTV V + AGHVLGAAMFMV+ R+LYTGDYS EEDRHL+
Sbjct: 125 NCYDKIIAIDYNQTVIVKDFRVTALNAGHVLGAAMFMVENERFRMLYTGDYSTEEDRHLK 184
Query: 202 AAE 204
A+
Sbjct: 185 GAD 187
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 159/430 (36%), Positives = 238/430 (55%), Gaps = 22/430 (5%)
Query: 31 AGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITHFH 85
AG EVG+SCV ++ GK I+FDCG+H Y P F I S + ++ITHFH
Sbjct: 42 AGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFH 101
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINRSM 144
LDH +LPYF E + G ++MT+ T A+ + L DY KV E F I +
Sbjct: 102 LDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIMECL 161
Query: 145 DKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRHL AA
Sbjct: 162 KKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA 221
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA-QELL 262
++ + D+ I ESTY + + RE+ F +H+ ++ GG+VLIP FALGRA QEL
Sbjct: 222 QIDRMQLDLLITESTYATTIRDSKYAREREFLKAVHNCLASGGKVLIPTFALGRAQQELC 281
Query: 263 LILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHI 320
++LD+YW E N+ PIY ++ L + Y+ I +++++ + N F FK++
Sbjct: 282 VLLDDYW----ERMNLKFPIYVSAGLTVQANMYYKMLISWTSQKVKETYTTRNAFDFKNV 337
Query: 321 SPLN-SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ S+ D GP V+ A+PG + SG S ++F W K N +PGY V GT+ +
Sbjct: 338 QKFDRSMIDAP--GPCVLFATPGMISSGFSLEVFKRWAPSKLNLITLPGYCVAGTVGHKL 395
Query: 380 IS-EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+S +P ++ L + VH ++FS H D +K L P ++ILVHGE +M
Sbjct: 396 MSGKPTKI----DLDKDTQIDVHQLAFSPHTDSKGIMDLVKFLSPKHVILVHGEKPKMAV 451
Query: 439 LKTKLMTELA 448
LK ++ +EL
Sbjct: 452 LKERIHSELG 461
>gi|224104292|ref|XP_002333964.1| predicted protein [Populus trichocarpa]
gi|222839280|gb|EEE77617.1| predicted protein [Populus trichocarpa]
Length = 169
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/162 (84%), Positives = 144/162 (88%), Gaps = 11/162 (6%)
Query: 1 MASVGQPPSLKRRDAPVSREG-DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
MAS GQ SLKRRDAPV+REG DQL +TPLGAGNEVGRSCVYMS+KGKT+LFDCGIH AY
Sbjct: 1 MASTGQSQSLKRRDAPVTREGGDQLTLTPLGAGNEVGRSCVYMSFKGKTVLFDCGIHLAY 60
Query: 60 SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK----------TTFKGRVFMTH 109
SGMAALPYFDEIDPS IDVLL+THFHLDHAASLPYFLEK TTF+GRVFMTH
Sbjct: 61 SGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKDQSNMFTLYQTTFRGRVFMTH 120
Query: 110 ATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLD 151
ATKAIYKLLLTDYVKVSKVSVEDMLFDE+DINRSMDKIE LD
Sbjct: 121 ATKAIYKLLLTDYVKVSKVSVEDMLFDEKDINRSMDKIEKLD 162
>gi|159111399|ref|XP_001705931.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434022|gb|EDO78257.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 757
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 189/569 (33%), Positives = 282/569 (49%), Gaps = 92/569 (16%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYK----GKTILFDCGIHPA------YSGMAALPYF 68
+ D + +TPLGAGNEVGRSC +SY+ +I+ DCG+HPA Y + ALP+F
Sbjct: 24 KPNDHVKLTPLGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFF 83
Query: 69 DEID-PSAIDVLLITHFHLDHAASLPYFL----EKTTFKGR--------VFMTHATKAIY 115
D D S + ++LITHFH DH A+LPY L ++ +G+ V+MT T I+
Sbjct: 84 DLEDYVSTLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPTLKIF 143
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVL-DFHQTVEVNGIKFWCYTAGHVLGA 174
K +TD + +K L+ +D+ ++L F+QT VNGI F AGHV+GA
Sbjct: 144 KESVTDVISQTK------LYTHEDVEFMAKNTKLLTSFYQTERVNGISFTAMPAGHVIGA 197
Query: 175 AMFMVDIAGVRVLYTGDYSRE-EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233
AMF + I LYTGD+S E EDRHL+ A PQ D+ IIESTYG + R RE+
Sbjct: 198 AMFHISIDNFHALYTGDFSCEPEDRHLQPATFPQVKLDLLIIESTYGTIRQKERMTRERD 257
Query: 234 FTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP-EFHNIPIYYASPLAKKCMA 292
F D+I ST+ + G VL+P F++GR QELL IL EYW H E + IYY S +A
Sbjct: 258 FIDLIVSTVKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARVTIYYVSAIADNARQ 317
Query: 293 VYQ-------------TYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMA 339
+Y + I + + R + + P K P V+
Sbjct: 318 LYSKDKGFLRHGDTGLSDIQTGKRKDRIIYTKTRPKNPKK--------------PYVMFC 363
Query: 340 SPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KTIISEPKEVTLMNGLTAPLNM 398
+PG LQSG+S+++++ C N ++ GY + TL K + +P G A M
Sbjct: 364 TPGMLQSGVSKEMYNELCGSPDNLLLVTGYATQDTLLYKLLEGKPP------GGYADAKM 417
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL--------ADC 450
++ +SFSAH+DY QT L++ P N+ +HG + LK + E +
Sbjct: 418 RIEELSFSAHSDYNQTLDVLRKTRPRNVAFIHGSEKSISSLKRTIANETRVNFSEGGKEA 477
Query: 451 NTKIIT---PKNCQSVEMYF-NSEKMAKTIGRLAEKTPEVG----ETVSGI--------- 493
+ + I+ P+N ++V F N +++ + AE T + G +++ I
Sbjct: 478 DKEEISFHYPRNGETVTFAFTNPVQLSIKVDTGAEDTAQTGVEDSRSIAAIAKALDKKKM 537
Query: 494 -LVKKGFTYQIMAPDDLHIFSQLSTANIT 521
+V+ GF + + + Q S IT
Sbjct: 538 YIVQDGFAFSLYNASSVKKKMQRSCGGIT 566
>gi|12846103|dbj|BAB27031.1| unnamed protein product [Mus musculus]
Length = 406
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 172/235 (73%), Gaps = 3/235 (1%)
Query: 291 MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +Q+GLSR
Sbjct: 1 MAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSR 60
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
+LF+ WC+DK+N +I GY VEGTLAK I+SEP+E+T M+G PL M V YISFSAH D
Sbjct: 61 ELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTD 120
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYF 467
Y QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F
Sbjct: 121 YQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 180
Query: 468 NSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 181 RGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 235
>gi|308162204|gb|EFO64613.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 737
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 187/561 (33%), Positives = 285/561 (50%), Gaps = 76/561 (13%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYK----GKTILFDCGIHPA------YSGMAALPYF 68
+ D + +TPLGAGNEVGRSC +SY+ +I+ DCG+HPA Y + ALP+F
Sbjct: 2 KANDHVKLTPLGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFF 61
Query: 69 DEID-PSAIDVLLITHFHLDHAASLPYFL----EKTTFKGR--------VFMTHATKAIY 115
D D S + ++LITHFH DH A+LPY L ++ +G+ ++MT T I+
Sbjct: 62 DLEDYVSTLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPIYMTAPTLKIF 121
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVL-DFHQTVEVNGIKFWCYTAGHVLGA 174
K +TD + +K L+ +D++ ++L F+QT V+GI F AGHV+GA
Sbjct: 122 KESVTDVISQTK------LYTHEDVDFMAKNTKLLTSFYQTERVSGISFTAMPAGHVIGA 175
Query: 175 AMFMVDIAGVRVLYTGDYSRE-EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233
AMF + I LYTGD+S E EDRHL+ A PQ D+ IIESTYG + R RE+
Sbjct: 176 AMFHISIDNFHALYTGDFSCEPEDRHLQPATFPQVKLDLLIIESTYGTIRQKERMTRERD 235
Query: 234 FTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP-EFHNIPIYYASPLAKKCMA 292
F D+I ST+ + G VL+P F++GR QELL IL EYW H E I IYY S +A
Sbjct: 236 FIDLIVSTVKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARITIYYVSAIADNARQ 295
Query: 293 VY---QTYILSMNERIRNQFANSNPFK--FKHISPLNSIDDFSDVGPSVVMASPGGLQSG 347
+Y + ++ + + + K + P N P V+ +PG LQSG
Sbjct: 296 LYSKDKGFLRHGDTGLSDIQTGKRKDKIIYTKTRPKNP------KKPYVMFCTPGMLQSG 349
Query: 348 LSRQLFDIWCSDKKNACVIPGYVVEGTLA-KTIISEPKEVTLMNGLTAPLNMQVHYISFS 406
+S+++++ C N ++ GY + TL K + +P G A M++ +SFS
Sbjct: 350 VSKEMYNELCGSPDNLLLVTGYATQDTLLYKLLEGKPP------GGYADAKMRIEELSFS 403
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL--------ADCNTKIIT-- 456
AH+DY QT L++ P N++ +HG + LK + E + + + I+
Sbjct: 404 AHSDYNQTLDVLRKTRPRNVVFIHGSEKSISSLKRTIANETRINFSEGGKEADKEEISFH 463
Query: 457 -PKNCQSVEMYF-NSEKMAKTIGRLAEKTPEVG----ETVSGI----------LVKKGFT 500
P+N ++V F N +++ + AE T + G +++ I +V+ GF
Sbjct: 464 YPRNGETVTFAFTNPVQLSIKVDTGAEDTAQTGVEDSRSIAAIAKALDKKKMYIVQDGFA 523
Query: 501 YQIMAPDDLHIFSQLSTANIT 521
+ + + Q S IT
Sbjct: 524 FSLYNASSVKKKMQRSCGGIT 544
>gi|194386428|dbj|BAG61024.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 171/235 (72%), Gaps = 3/235 (1%)
Query: 291 MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
MAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASPG +QSGLSR
Sbjct: 1 MAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSR 60
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
+LF+ WC+DK+N +I GY VEGT AK I+SEP+E+T M+G PL M V YISFSAH D
Sbjct: 61 ELFESWCTDKRNGVIIAGYCVEGTFAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTD 120
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD---CNTKIITPKNCQSVEMYF 467
Y QTS F++ L PP++ILVHGE +EM RLK L+ E D + ++ P+N ++V + F
Sbjct: 121 YQQTSEFIRALKPPHVILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 180
Query: 468 NSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
EK+AK +G LA+K PE G+ VSGILVK+ F Y I++P DL ++ L+ + + Q
Sbjct: 181 RGEKLAKVMGFLADKKPEQGQRVSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQ 235
>gi|76156582|gb|AAX27764.2| SJCHGC03746 protein [Schistosoma japonicum]
Length = 251
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 126/233 (54%), Positives = 169/233 (72%), Gaps = 3/233 (1%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L I PLGAG EVGRSC+ +++KGK I+ DCGIHP +LP+ D I D + D+
Sbjct: 10 ESDKLTIMPLGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDIQSTDL 69
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV--EDMLFD 136
+LI+HFHLDH LP+ L KT K + +MTHATKAIY+ LL D+V+VS + L+
Sbjct: 70 VLISHFHLDHCGGLPHLLLKTGAKLKCYMTHATKAIYRYLLADFVRVSNSGGLPDQALYS 129
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
++DI S+D IE +DFHQ +EVNGIKF + AGHVLGAAMF+++IAGV++LYTGD+SR+E
Sbjct: 130 DRDIVASLDHIETIDFHQELEVNGIKFSAFHAGHVLGAAMFLIEIAGVKILYTGDFSRQE 189
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
DRHL AE+P PD+ I E+TYG+ +H R RE RFT ++H +++GGR L
Sbjct: 190 DRHLMCAEVPPIRPDVLITEATYGIHIHDKREEREARFTSLVHDIVTRGGRCL 242
>gi|253742053|gb|EES98907.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 757
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 168/468 (35%), Positives = 243/468 (51%), Gaps = 66/468 (14%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYK----GKTILFDCGIHPA------YSGMAALPYF 68
+ D + +TPLGAGNEVGRSC +SY+ +I+ DCG+HPA Y + ALP+F
Sbjct: 24 KANDHVKVTPLGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFF 83
Query: 69 DEIDPSA-IDVLLITHFHLDHAASLPYFL----EKTTFKGR--------VFMTHATKAIY 115
D D A + ++LITHFH DH A+LPY L ++ +G+ V+MT T I+
Sbjct: 84 DLEDYVANLSLILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPTLKIF 143
Query: 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVL-DFHQTVEVNGIKFWCYTAGHVLGA 174
K + D + +K L+ +D+ +L F+QT V+G+ F AGHV+GA
Sbjct: 144 KESVADVISQTK------LYTHEDVEFMAKNTRLLTSFYQTERVSGVSFTAMPAGHVIGA 197
Query: 175 AMFMVDIAGVRVLYTGDYSRE-EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233
AMF + I LYTGD+S E EDRHL+ A PQ D+ IIESTYG + R RE+
Sbjct: 198 AMFHISIDNFHALYTGDFSCEPEDRHLQPATFPQVRLDLLIIESTYGTIRQKERMTRERD 257
Query: 234 FTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP-EFHNIPIYYASPLAKKCMA 292
F D+I ST+ + G VL+P F++GR QELL IL EYW H E + IYY S +A
Sbjct: 258 FIDLIVSTVKKDGCVLLPVFSIGRVQELLCILQEYWREHEQEMARVTIYYVSAIADNARQ 317
Query: 293 VYQ-------------TYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMA 339
+Y + I + + R + + P K P V+
Sbjct: 318 LYSKDKGFLRHGDTGLSDIQTGKRKDRIIYTKTRPKNPKK--------------PYVMFC 363
Query: 340 SPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KTIISEPKEVTLMNGLTAPLNM 398
+PG LQSG+S+++++ C N ++ GY + TL K + +P G A M
Sbjct: 364 TPGMLQSGVSKEMYNELCGSPDNLLLVTGYATQDTLLYKLLEGKPP------GAYADAKM 417
Query: 399 QVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTE 446
++ +SFSAH+DY QT L++ P N++ +HG + LK + E
Sbjct: 418 RIEELSFSAHSDYNQTLDVLRKTRPRNVVFIHGSEKSISSLKRTIANE 465
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 173/529 (32%), Positives = 249/529 (47%), Gaps = 95/529 (17%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI--------- 76
+T LGAG +VGRSCV +++ + ++ DCG H + P + P +
Sbjct: 3 VTILGAGQDVGRSCVLLTFPTRRLILDCGAHCGFVDHKRYPALQMLGPDGVYEHQLEILE 62
Query: 77 --------------------------------------------DVLLITHFHLDHAASL 92
D +I+HFHLDH +L
Sbjct: 63 KTYLGSQTERQGGASDGPIEDPTQKAVLMRVAMERTLNDLTNTLDCAIISHFHLDHVGAL 122
Query: 93 PYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS--------KVSVEDMLFDEQD----- 139
P+ E+ F G V+MT TKA+ +LL D +V+ K ++ ++L D
Sbjct: 123 PFLTEQLKFNGPVYMTWPTKALSPILLRDSAQVTAQRTVKQDKENLRNLLNMRTDSESHK 182
Query: 140 ---------------INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
S+ K L +T + IK Y AGHVLGAAMF V+ G
Sbjct: 183 RRKGADDPWGYNLGPATESVKKAIALQLQETRHIGNIKITPYYAGHVLGAAMFHVECDGF 242
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
VLYTGD++ D+HL A++P+ PD+ I ESTY + QPR E V+H T+ +
Sbjct: 243 SVLYTGDFNTVPDKHLGPAKVPRLCPDVLICESTYATVVRQPRKATEMELCTVVHDTLLK 302
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+VLIP FA+GRAQEL +ILD YWS + PIY+ L++K Y+ + NE
Sbjct: 303 GGKVLIPVFAVGRAQELAIILDSYWSKLELKY--PIYFGGGLSEKATNYYKLHSCWTNEH 360
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
N N F +I P ++ ++ P V+ A+PG + +GLS + +W + N
Sbjct: 361 NIPGL-NENTFSMSYIQPFDN-GYLNENRPMVLFATPGMVHAGLSLRACKLWAPNPNNLI 418
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNM--QVHYISFSAHADYAQTSTFLKELM 422
VIPGY V+GT+ +IS K + G P+N+ +V Y+SFSAHAD A +++
Sbjct: 419 VIPGYCVQGTVGNKLISGEKVIQTSAG---PINVKCKVRYLSFSAHADSAGIIQLARQVS 475
Query: 423 PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEK 471
P NI+LVHGES M + L L + P N +VE F EK
Sbjct: 476 PKNILLVHGESESMKKFSKHLNHILG---VPVHCPANGYTVE--FEKEK 519
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 145/382 (37%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + +YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC------VI 366
F+FKHI + F+D GP V P L W +++ A ++
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVGEGGP-------WLDLVQAWAGEEEGAATFCPQVIM 349
Query: 367 PGYVVEGTLAKTIISEPKEVTL 388
PGY V+GT+ I+S +++ +
Sbjct: 350 PGYCVQGTVGHKILSGQRKLEM 371
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 207/369 (56%), Gaps = 14/369 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFH+DH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYED 127
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I R M K+ +D QTV+V+ + Y AGHV+GAAM + ++YTGDY+ DR
Sbjct: 128 ILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDR 187
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA++ + D+ I ESTY + + RE+ F +H +S GG+VLIP FALGRA
Sbjct: 188 HLGAAQIDRLKLDVLITESTYAKSIRDSKPAREREFLKAVHKCVSGGGKVLIPTFALGRA 247
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++LD+YW +PIY+++ L + Y+ I +++I++ NPF FK
Sbjct: 248 QELCMLLDDYWERMGL--KVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVHNPFDFK 305
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-K 377
H+ ++ GP V+ A+PG + G S + F W +KN +PGY V GT+ K
Sbjct: 306 HVCHFER-SFINNPGPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHK 364
Query: 378 TIISEPKEV 386
+ +P V
Sbjct: 365 LMCGKPTRV 373
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/391 (36%), Positives = 215/391 (54%), Gaps = 15/391 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--------SAIDVLL 80
LGAG EVG+SCV ++ GK ++FDCG+H Y P F +AI ++
Sbjct: 8 LGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFTTAISCVV 67
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV-EDMLFDEQD 139
ITHFH+DH +LPYF E + G ++MT+ TKA+ +L DY KV+ E+ + +D
Sbjct: 68 ITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEEKQYSYED 127
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I R M K+ +D QTV+V+ + Y AGHV+GAAM + ++YTGDY+ DR
Sbjct: 128 ILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGDYNMTPDR 187
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA++ + D+ I ESTY + + RE+ F +H +S GG+VLIP FALGRA
Sbjct: 188 HLGAAQIDRLKLDVLITESTYAKSIRDSKPAREREFLKAVHKCVSGGGKVLIPTFALGRA 247
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++LD+YW +PIY+++ L + Y+ I +++I++ NPF FK
Sbjct: 248 QELCMLLDDYWERMGL--KVPIYFSAGLTIQANVYYKMLIGWTSQKIKDSHTVHNPFDFK 305
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-K 377
H+ ++ GP V+ A+PG + G S + F W +KN +PGY V GT+ K
Sbjct: 306 HVCHFER-SFINNPGPCVLFATPGMITGGFSLEAFKKWAPSEKNLVTLPGYCVSGTIGHK 364
Query: 378 TIISEPKEVTLMNG-LTAPLNMQVHYISFSA 407
+ +P V + + + H IS+ A
Sbjct: 365 LMCGKPTRVDYEDTHIDVRCQVDFHVISYLA 395
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/489 (32%), Positives = 243/489 (49%), Gaps = 82/489 (16%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY---------------SGMAALPYFDE 70
I LGAG VGRSCV + + + I+FDCG H Y S M P DE
Sbjct: 12 IKVLGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNSNMEGAPKIDE 71
Query: 71 IDP----------------------------SAIDVLLITHFHLDHAASLPYFLEKTTFK 102
+ ID ++I+HFH+DH +LP+F E +K
Sbjct: 72 ENNLNVEVNISIVNSNISDKEKLINNLKKINEIIDCVIISHFHMDHIGALPFFTEILQYK 131
Query: 103 GRVFMTHATKAIYKLLLTDYVKVSKVSVE----------------DML------------ 134
G + M++ TKA+ +LL D K+S + E D+L
Sbjct: 132 GTIIMSYPTKALSPVLLLDGCKISDIKWEKKNLEKQIKMLNEKSDDLLNYNINCIKKDPW 191
Query: 135 -FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
E++I ++K+ L ++T E+ I Y AGHVLGA M+ +++ + V+YTGDY+
Sbjct: 192 NITEENIYNCINKVVGLQVNETYELGDISITPYYAGHVLGACMYRLEVNNISVIYTGDYN 251
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
D+HL + ++P +P+I I ESTY + R E ++++ + +GG+VLIP F
Sbjct: 252 TIPDKHLGSTKIPVLTPEIFISESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVF 311
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS- 312
A+GRAQEL ++L+EYW N PIY+ L + Y+ Y + I N ++
Sbjct: 312 AIGRAQELSILLEEYWEKMK--INCPIYFGCGLTENANKYYKIY----SSWISNNCVSTE 365
Query: 313 --NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
N F F +IS S + ++ P V+ A+PG L +GL+ + F W S+ N ++PGY
Sbjct: 366 VKNLFDFSNISQF-SNNYLNENRPMVLFATPGMLHTGLALKAFKAWASNPNNLIILPGYC 424
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
V+GT+ +I K++ L +N ++ Y+SFSAHAD +K +MP N+I VH
Sbjct: 425 VQGTIGHKLIMGEKKILLDGNTYVYVNCKIIYLSFSAHADSNGIQQLIKHVMPKNVIFVH 484
Query: 431 GESHEMGRL 439
G+ + M +L
Sbjct: 485 GDKNGMEKL 493
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 244/489 (49%), Gaps = 82/489 (16%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD---------------- 69
I LGAG VGRSCV + + + I+FDCG H Y P F+
Sbjct: 12 IKVLGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNSNLEGAPKIDE 71
Query: 70 ------EIDPS---------------------AIDVLLITHFHLDHAASLPYFLEKTTFK 102
E++ S ID ++I+HFH+DH +LP+F E +K
Sbjct: 72 ENNLNVEVNISIVNSNIADKEKLINNLKKINEMIDCVIISHFHMDHIGALPFFTEILQYK 131
Query: 103 GRVFMTHATKAIYKLLLTDYVKVSKVSVE----------------DML------------ 134
G + M++ TKA+ +LL D K+S + E D+L
Sbjct: 132 GTIIMSYPTKALSPVLLLDGCKISDMKWEKKNLEKQIKMLNEKSDDLLNYNINCLKKDPW 191
Query: 135 -FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
E++I ++K+ L ++T E+ I Y AGHVLGA M+ +++ + V+YTGDY+
Sbjct: 192 NITEENIYNCINKVVGLQVNETYELGDISITPYYAGHVLGACMYRLEVNNISVIYTGDYN 251
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
D+HL + ++P +P+I I ESTY + R E ++++ + +GG+VLIP F
Sbjct: 252 TIPDKHLGSTKIPVLTPEIFISESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVF 311
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS- 312
A+GRAQEL ++L+EYW N PIY+ L + Y+ Y + I N ++
Sbjct: 312 AIGRAQELSILLEEYWEKMK--INCPIYFGCGLTENANKYYKIY----SSWISNNCVSTE 365
Query: 313 --NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
N F F +IS S + ++ P V+ A+PG L +GL+ + F W S+ N ++PGY
Sbjct: 366 VKNLFDFSNISQF-SNNYLNENRPMVLFATPGMLHTGLALKAFKAWASNPNNLIILPGYC 424
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
V+GT+ +I K++ L +N ++ Y+SFSAHAD +K +MP N+I VH
Sbjct: 425 VQGTIGHKLIMGEKKILLDGSTYIYVNCKIIYLSFSAHADSNGIQQLIKHVMPKNVIFVH 484
Query: 431 GESHEMGRL 439
G+ + M +L
Sbjct: 485 GDKNGMEKL 493
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 232/446 (52%), Gaps = 23/446 (5%)
Query: 25 IITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVL 79
++ P GAG +VGRSC + G+T++FDCG H + P F + + ID L
Sbjct: 1 MLLPAGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTELIDAL 60
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-FDEQ 138
+ITHFH+DH +LPYF E ++G V MT+ T A+ ++L DYVKV+ ++L + EQ
Sbjct: 61 VITHFHIDHIGALPYFTEVCGYRGPVLMTYPTFAMAPIMLEDYVKVNADRPGEVLPYTEQ 120
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+ + ++ +D HQ V V G+ F + AGHVLGAAM + + LYTGD++ D
Sbjct: 121 HVRDCLRRVTAVDLHQVVAVAPGLSFTFHYAGHVLGAAMVTMTAGHLTALYTGDFNSAPD 180
Query: 198 RHLRAAELPQF----------SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
RHL +AEL PD+ I E+TY L + RE+ + T++ GG+
Sbjct: 181 RHLGSAELAAGGAGPAGCLMREPDVLISEATYAASLRDSKRGRERDLLQAVEDTVAAGGK 240
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
VLIP FA+GRAQELL++L + W + +PIY++S +A + + YQ + N +R
Sbjct: 241 VLIPTFAMGRAQELLMLLADCWRR--KGLTVPIYFSSAMASRALTYYQLLLNWTNANVRK 298
Query: 308 QFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
++ + P + GP+V+ ASPG + SG+S + F W +N V+
Sbjct: 299 A-VEADVYGMFRTRPWDR-SLLQAPGPAVLFASPGNITSGVSLEAFRAWAGSSRNLVVLA 356
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
GY V G + + + A + +V ++FSAHAD ++ P ++
Sbjct: 357 GYQVRGEWGGRLTNRSWSQAHAHA-HAQVRCRVKMLAFSAHADLRGLMGLVRRCRPRAVV 415
Query: 428 LVHGESHEMGRLKTKLMTELA-DCNT 452
LVHG+ M L+ ++ L +C+
Sbjct: 416 LVHGQREPMEFLRGRIEATLGIECHA 441
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/529 (29%), Positives = 247/529 (46%), Gaps = 87/529 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSA---- 75
+++I LGAG VGRSCV + + + ++FDCG H Y P F+ + DP A
Sbjct: 8 KIVIRVLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNILVSNDPYAVERE 67
Query: 76 ------------------------------------------IDVLLITHFHLDHAASLP 93
ID ++I+HFH+DH +LP
Sbjct: 68 KGMGEANIYEHNLNTEVNITIVNSSISEKEKLIKNLSRINEIIDCVIISHFHMDHIGALP 127
Query: 94 YFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ--------------- 138
+F E ++G + M++ TKA+ LL D +V+ + E F+ Q
Sbjct: 128 FFTEILKYRGTIIMSYPTKALSPTLLLDGCRVADIKWEKQNFERQIKLLNEKSDELLNYN 187
Query: 139 --------------DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
I + K+ L ++T E+ + Y AGHVLGA +F +++
Sbjct: 188 ISSLKKDPWNISEDHIYSCIGKVVGLQINETFEMGNMSITPYYAGHVLGACIFKIEVNNF 247
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
V+YTGDY+ D+HL + ++P +P+I I ESTY + R E +++H + +
Sbjct: 248 SVIYTGDYNTVPDKHLGSTKIPSLTPEIFISESTYATYVRPTRKASELDLCNLVHECVHK 307
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+VLIP FA+GRAQEL ++LD YW N PIY+ L + Y+ Y +N
Sbjct: 308 GGKVLIPVFAIGRAQELSILLDSYWRKMKI--NYPIYFGCGLTENANKYYRIYSSWVNSS 365
Query: 305 IRNQFANSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ N F F +ISP ++++ + P V+ A+PG L +GLS + F W KN
Sbjct: 366 CVST-DKKNLFDFANISPF--VNNYLGENRPMVLFATPGMLHTGLSLKAFKAWAGSSKNL 422
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
V+PGY V+GT+ +I ++++ + ++ Y+SFSAHAD ++ ++P
Sbjct: 423 IVLPGYCVQGTVGHKLIMGERKISFDGNSYMNIACKIIYLSFSAHADSNGIQQLIRHVLP 482
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKM 472
N++ VHGE + M +L + + + P Q E F+ M
Sbjct: 483 QNVLFVHGEKNGMEKLSKHISSHYL---INSLCPSLGQHCEFNFSKSNM 528
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 150/502 (29%), Positives = 241/502 (48%), Gaps = 84/502 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD------------- 69
+++I LGAG VGRSCV + + + ++FDCG H Y P F+
Sbjct: 8 KIVIRVLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNLLVSSEAHAEERE 67
Query: 70 ---------------EIDPS---------------------AIDVLLITHFHLDHAASLP 93
E++ S ID ++I+HFH+DH +LP
Sbjct: 68 KEKGEANIYEHHLNTEVNISIVNSSISEKEKLINNLKRINEMIDCVIISHFHMDHIGALP 127
Query: 94 YFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD----------------- 136
+F E ++G + M++ TKA+ +LL D +V+ + E F+
Sbjct: 128 FFTEILKYRGTILMSYPTKALSPILLLDGCRVADLKWEKQNFERQIKLLNEKSDELLNYN 187
Query: 137 ------------EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
E+ I + K+ L ++T ++ + Y AGHVLGA +F +++
Sbjct: 188 ISSLKKDPWNISEEQIYSCIGKVVGLQINETFQMGNMSITPYYAGHVLGACIFKIEVNNF 247
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
V+YTGDY+ D+HL + ++P +P+I I ESTY + R E +++H + +
Sbjct: 248 SVIYTGDYNTVPDKHLGSTKIPSLTPEIFISESTYATYVRPTRKASELDLCNLVHECVHK 307
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+VLIP FA+GRAQEL ++LD YW N PIY+ L + Y+ Y +N
Sbjct: 308 GGKVLIPVFAIGRAQELSILLDSYWKKMKI--NYPIYFGCGLTENANKYYRIYSSWVNSS 365
Query: 305 IRNQFANSNPFKFKHISP-LNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ N F F +ISP +NS + P V+ A+PG L +GLS + F W KN
Sbjct: 366 CVST-DKKNLFDFANISPFVNSY--LGENRPMVLFATPGMLHTGLSLKAFKAWSGCSKNL 422
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
V+PGY V+GT+ +I ++++ + ++ Y+SFSAHAD ++ ++P
Sbjct: 423 IVLPGYCVQGTVGHKLIMGERKISFDGNTYLNVACRIIYLSFSAHADSNGIQQLIRHVLP 482
Query: 424 PNIILVHGESHEMGRLKTKLMT 445
N++ VHGE H M +L + +
Sbjct: 483 QNVLFVHGEKHGMEKLSKHIAS 504
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 153/470 (32%), Positives = 233/470 (49%), Gaps = 33/470 (7%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-- 75
S G + P GAG +VGRSC + G+T++FDCG H + P F + +
Sbjct: 7 SSYGAERQTVPTGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRF 66
Query: 76 ---IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVE 131
ID ++ITHFH DH +LPYF E ++G + MT+ T AI ++L DYVKV + E
Sbjct: 67 TEIIDAVVITHFHTDHLGALPYFTEICGYRGPILMTYPTFAIAPIMLADYVKVNADRPGE 126
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
+ ++EQ + + ++ +D HQ V V G+ F + AGHVLGAAM + + LYTG
Sbjct: 127 RLPYNEQHVRDCLRRVTAVDLHQVVVVAPGLSFTFHYAGHVLGAAMVHMTAGHLTALYTG 186
Query: 191 DYSREEDRHLRAAELPQF------------SPDICIIESTYGVQLHQPRNIREKRFTDVI 238
D++ DRHL AE P PD+ I E+TY L + RE+ +
Sbjct: 187 DFNSSPDRHLGPAEAPLALLQGGPSGASVRHPDVLISEATYAATLRDSKRARERDLLGAV 246
Query: 239 HSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI 298
T++ GG+VLIP FA+GRAQELL+++ + W + +PIY++S +A + + YQ +
Sbjct: 247 VETVAAGGKVLIPTFAMGRAQELLMLITDCWERNGL--QVPIYFSSAMAARALVYYQLLL 304
Query: 299 LSMN-ERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
N I F N + HI ++ GP+++ ASPG + SG++ + F W
Sbjct: 305 NWTNANHIHCVFVNVHICVCTHI---HTTWMMLAPGPALLFASPGNIASGVALEAFRSWA 361
Query: 358 SDKKNACVIPGYVVEGTLAK-TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTST 416
KN V+ GY V G + + ++ ++FSAHAD
Sbjct: 362 GSSKNLLVLAGYQVRGGAGHDNLCGGRSGGRSGGERRVEVRCRIKMLAFSAHADLRGLLG 421
Query: 417 FLKELMPPNIILVHGESHEM----GRLKTKLMTEL---ADCNTKIITPKN 459
++ P ++LVHG+ M GR++T + E A T I P+
Sbjct: 422 LVRRCKPRAVVLVHGQREPMEFLRGRIETHVGIECHAPATGTTVTIAPRR 471
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 251 bits (642), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/496 (29%), Positives = 239/496 (48%), Gaps = 84/496 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSA---- 75
+++I LGAG VGRSCV + + + ++FDCG H Y P F+ + D S+
Sbjct: 8 KIVIRVLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNILVSNDTSSVEKE 67
Query: 76 ------------------------------------------IDVLLITHFHLDHAASLP 93
ID ++I+HFH+DH +LP
Sbjct: 68 KGMGEGNMYEHHLNTEVNITIVNSSISEKEKLIEKLSRINEIIDCVIISHFHMDHIGALP 127
Query: 94 YFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD----------------- 136
+F E ++G + M++ TKA+ +LL D +V+ + E F+
Sbjct: 128 FFTEILKYRGTIIMSYPTKALSPILLLDGCRVADLKWEKKNFERQIKLLNEKSDELLNYN 187
Query: 137 ------------EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
E+ I + K+ L ++T E+ + Y AGHVLGA ++ +++
Sbjct: 188 ISSLKKDPWNISEEHIYSCIGKVVGLQINETYEMGNMSITPYYAGHVLGACIYKIEVNNF 247
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
V+YTGDY+ D+HL + ++P +P+I I ESTY + R E +++H + +
Sbjct: 248 SVIYTGDYNTVPDKHLGSTKIPSLNPEIFISESTYATYVRPTRKASELDLCNLVHECVHK 307
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+VLIP FA+GRAQEL ++LD YW N PIY+ L + Y+ Y +N
Sbjct: 308 GGKVLIPVFAIGRAQELSILLDSYWRKMK--INYPIYFGCGLTENANKYYRIYSSWVNSN 365
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ N F F +ISP ++++ D P V+ A+PG L +GLS + F W N
Sbjct: 366 CVST-DKKNLFDFANISPF--VNNYLDENRPMVLFATPGMLHTGLSLKAFKAWAGSSNNL 422
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
V+PGY V+GT+ +I ++++ + ++ Y+SFSAHAD ++ ++P
Sbjct: 423 IVLPGYCVQGTVGHKLIMGERKISFDGSSYLNVACRIIYLSFSAHADSNGIQQLIRHVLP 482
Query: 424 PNIILVHGESHEMGRL 439
N++ VHGE + M +L
Sbjct: 483 QNVLFVHGEKNGMEKL 498
>gi|297739594|emb|CBI29776.3| unnamed protein product [Vitis vinifera]
Length = 159
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/159 (76%), Positives = 137/159 (86%), Gaps = 4/159 (2%)
Query: 291 MAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSR 350
M++YQTYI SMNERIRNQF N NPF FK IS L SI++ +DVGPSVVMASP SGLSR
Sbjct: 1 MSIYQTYINSMNERIRNQFENLNPFDFKPISHLKSIENLNDVGPSVVMASP----SGLSR 56
Query: 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
QLFD+WC DKKNACVI GYV+EG LAKTII+EPKEVTL+NGLT PLNMQV+YISFS HAD
Sbjct: 57 QLFDMWCFDKKNACVILGYVMEGILAKTIINEPKEVTLINGLTVPLNMQVYYISFSTHAD 116
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
+AQTSTF+KELMPPNIILVHGE++EMGRLK L+ + D
Sbjct: 117 FAQTSTFVKELMPPNIILVHGEANEMGRLKQNLIDRVQD 155
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 157/539 (29%), Positives = 251/539 (46%), Gaps = 90/539 (16%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF------------------DE 70
LGAG +VGRSCV ++ G+ ++FDCG H Y+ P F ++
Sbjct: 10 LGAGQDVGRSCVIVTIGGRKVMFDCGAHSGYNDNRRYPLFSLLESKESPITVNSSNKTEK 69
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-- 128
I ID +++THFH+DH +LPYF E + G + M++ TKA+ +LL D +V +
Sbjct: 70 ISNFDIDCIILTHFHIDHCGALPYFTENLGYDGPILMSYPTKALTPILLKDSCRVQSLKH 129
Query: 129 -----------------------SVEDML-FDEQDINRSMDKIEVLDFHQTVEVNGIKFW 164
S E+ L F EQ + +S+ + L H + +
Sbjct: 130 TKKNPIMDSDKSFMALLNENPAASYEESLNFTEQSVEKSLSRAIPLQLHSDTHIGDLTIR 189
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYT---------------GDYSREEDRHLRAAELPQFS 209
Y AGHVLGA++F V V+YT GD++ D+HL A++P+
Sbjct: 190 PYYAGHVLGASIFAVRYKSQLVVYTGTNSFNAIRQKTIQLGDFNTMSDKHLGPAKIPKLE 249
Query: 210 PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
PD+ I ESTY + R E + T+ GG+VLIP FA+GRAQEL +IL+ +W
Sbjct: 250 PDVLICESTYATIVRPSRRSAEVELCKAVKDTLDHGGKVLIPVFAVGRAQELAIILECFW 309
Query: 270 SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF 329
N PIY+A ++++ Y+ + ++ + F ++ F H D
Sbjct: 310 KR--VNLNYPIYFAGGMSERASTYYKLHSYALMDLDGQLFESTLISAFDH-------DFI 360
Query: 330 SDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM 389
++ P V+ A+PG L GLS + W D N +IPGY ++GT+ +I K + +
Sbjct: 361 NEKRPMVLFATPGMLNGGLSLSVCKAWAPDPHNLIIIPGYCIQGTVGNRLIMGEKLIKTV 420
Query: 390 NGLTAPLNMQVHYISFSAHADYAQTSTFLKE-------LMPPNIILVHGESHEMGRLKTK 442
NG+ + ++ Y+SFSAHAD A F+ + P NIILVHGE + +
Sbjct: 421 NGVI-DIKCKIRYLSFSAHADSAGIQQFINHVSLIITYIRPKNIILVHGERDGIQKFARH 479
Query: 443 LMTELADCNTKIITPKNCQSV-----------EMYFNSEKMAKTIGRLAEKTPEVGETV 490
+ +E + P+ QS+ +++ + + + +LA + P + V
Sbjct: 480 IKSEFG---IPVFCPQTGQSITIKTESSDPDEKVWVDYQLYNSVVDKLAHQNPTLTRIV 535
>gi|238585297|ref|XP_002390824.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
gi|215454706|gb|EEB91754.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
Length = 220
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 123/220 (55%), Positives = 159/220 (72%), Gaps = 5/220 (2%)
Query: 62 MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLL 118
MA+LP+ D++D S +D +LITHFHLDHAA+L Y EKT FK G+V+MTH TKA++K +
Sbjct: 1 MASLPFIDDLDWSTVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFM 60
Query: 119 LTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMF 177
+ D++++S S D LF D+ S+ I + HQ + G+ F Y AGHVLGA MF
Sbjct: 61 MQDFLRMSSSSS-DALFSPLDMTMSLSSIIPISAHQVITPCPGVTFTPYHAGHVLGACMF 119
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
++DI G+R+LYTGDYSREEDRHL AE+P PD+ I+ESTYGVQ + R +E RFT +
Sbjct: 120 LIDIYGLRILYTGDYSREEDRHLVKAEIPPIRPDVLIVESTYGVQSLESRPEKELRFTTL 179
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHN 277
+HS I +GG VL+P FALGRAQELLLILDEYW HP+ HN
Sbjct: 180 VHSIIRRGGHVLLPQFALGRAQELLLILDEYWKKHPDLHN 219
>gi|240274420|gb|EER37936.1| endoribonuclease ysh-1 [Ajellomyces capsulatus H143]
Length = 240
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 122/219 (55%), Positives = 155/219 (70%), Gaps = 6/219 (2%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L+ LG GNEVGRSC + YKGKT++ D G+HPA G AALP+FD+ D
Sbjct: 16 DEPVD-PSDELLFYNLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDDFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFHLDH+ASLPY L KT F+GRVFMTHATKAIYK L+ D V+VS S
Sbjct: 75 STVDILLISHFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD ++ IE +DF+ T +N I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEQDHLSTLSHIEAIDFNTTHTINNIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPR 227
GDYSREEDRHL +AE P+ D+ I EST+GV + PR
Sbjct: 195 GDYSREEDRHLISAEAPKGVKVDVLITESTFGVSSNPPR 233
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 129/311 (41%), Positives = 185/311 (59%), Gaps = 13/311 (4%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQQGRLTEFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PDI I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNMKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLN 324
F+FKHI +
Sbjct: 299 MFEFKHIKAFD 309
>gi|145507230|ref|XP_001439570.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406765|emb|CAK72173.1| unnamed protein product [Paramecium tetraurelia]
Length = 484
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 147/445 (33%), Positives = 228/445 (51%), Gaps = 44/445 (9%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSA----IDVLLITHFHLDHAASLPYFLE--KTTFKG 103
+ DCG+H + P F I+ +D++LITHFHLDH +LPYF E + G
Sbjct: 1 MLDCGLHMTHQDNRRFPDFSLIEEKLGRKYVDLVLITHFHLDHCGALPYFTELYGNGYNG 60
Query: 104 RVFMTHATKAIYKLLLTDYVKVSKVSVED-----------------------MLFDEQDI 140
V M+ TKA+ +L DY ++ + ED +++D ++I
Sbjct: 61 PVVMSMPTKALLPYMLEDYRRIWTMPKEDQQFQQQSSQQDYSINPQIKTDPLLIYDHENI 120
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD-YSREEDRH 199
++K++V+ ++T +G++ Y AGH+LGA MF V Y + Y+ DRH
Sbjct: 121 KSCVNKVQVIGLYETQNFDGVEVTAYYAGHLLGACMFHVK-------YKNEIYNSIADRH 173
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L A + Q PD+ I ESTY + + RE+ F + + +GG+VLIP FALGRAQ
Sbjct: 174 LGGAYIDQLQPDLVISESTYATIIRDSKRTRERNFLMHVQEVLDRGGKVLIPVFALGRAQ 233
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
EL ++L+ YW +YYA+ L +K Y+ + +E+I+ F + N F FK+
Sbjct: 234 ELSVLLESYWQRTK--CKAGLYYAAGLIEKANQYYKIFTGWESEKIQQSFLDDNIFNFKY 291
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
I P + + V++A+PG L GLS Q+F WC N+ VIPGY V GTL +
Sbjct: 292 IQPFDR-NLIKSPLSMVLLATPGMLHGGLSMQVFKEWCGCANNSLVIPGYCVPGTLGNKL 350
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
++ K V + N + MQ++ +SFSAHAD + L P +I VHGE H M L
Sbjct: 351 LAGVKHVRIDNK-DYDIKMQINNMSFSAHADSRGIIQLVNHLQPKSIAFVHGEYHRMKTL 409
Query: 440 KTKLMTELADCNTKIITPKNCQSVE 464
+++ ++ ++ P N + +E
Sbjct: 410 GAEIIDKI---QIRVDCPANFELLE 431
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 193/347 (55%), Gaps = 32/347 (9%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
Q I M K+ + HQTV++ + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQIK---------------------VGSESVVYTGDYNMTP 161
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALG
Sbjct: 162 DRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 221
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
RAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+
Sbjct: 222 RAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFE 279
Query: 317 FKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
FKHI + F+D GP VV A+PG L +G S Q+F W ++KN
Sbjct: 280 FKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKN 324
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/457 (32%), Positives = 235/457 (51%), Gaps = 31/457 (6%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDPSAIDVLLI 81
QLI GAG EVGRS + + K +L DCG++ A LP + + P +D++LI
Sbjct: 14 QLIC--FGAGGEVGRSSILVEIGSKKVLLDCGVNFTATDEKDRLPAYQDPFPK-VDLVLI 70
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
+H H DH A++PY E + V+MT A++ + ++L D++KV+ E+ + +D+
Sbjct: 71 SHIHTDHLAAVPYLTEVLKCQAPVYMTRASQMMMPIMLDDFLKVT----ENPPYKAEDLT 126
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
KI+V++F+ E GI + AGH+LGAA F V + G+ +YTGD+S D HL
Sbjct: 127 NCKPKIKVVEFYSRFEAAPGIFVQAFPAGHILGAACFFVQVRGLSFIYTGDFSAIADHHL 186
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+P+ PD+ I ESTYG Q+ RE+ F ++H + +GG+VLIP FA+GR QE
Sbjct: 187 SGHAVPRLFPDLLITESTYGNQVRDSIAKRERSFVQMVHQVVGEGGKVLIPVFAVGRLQE 246
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR-NQFAN-SNPFKFK 318
+ L+L++YW+ + PIYY + L + CM VY+ + MN ++ N F N S FKF
Sbjct: 247 ICLMLEDYWNRMG--YTEPIYYTTNLGENCMKVYKQCVNWMNPTVQTNLFDNGSTAFKFT 304
Query: 319 HISPLNSIDDFSDVGPSVVM-ASPGGLQSGLSRQLFDI---WCSDKKNACVIPGYVVEGT 374
+ N D +VM A+ G L G F + W D +N + PGY T
Sbjct: 305 YSRNFNPKKSKIDESRGLVMLATSGMLNPGTPAFNFFVNEKWYDDPRNMVIFPGYCGPNT 364
Query: 375 LAKTIISEPKEVTLMN------GLTAP--LNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
+ +++ + +T + +V ISFSAHAD + + + P +
Sbjct: 365 FGRAVLTRDLTTNRVQFTSRRPAMTVDIIIKCKVERISFSAHADQFEIISLCDRVRPSKV 424
Query: 427 ILVHGESHEMGRLKTKLM------TELADCNTKIITP 457
+ +HG+ + L T++ E N K+ TP
Sbjct: 425 VTIHGDKPSVDALATRITQTTGIPAEAPRNNAKVTTP 461
>gi|119576648|gb|EAW56244.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_j
[Homo sapiens]
Length = 476
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 191/328 (58%), Gaps = 9/328 (2%)
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DR
Sbjct: 2 IKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDR 61
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRA
Sbjct: 62 HLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRA 121
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FK
Sbjct: 122 QELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFK 179
Query: 319 HISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+
Sbjct: 180 HIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGH 237
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M
Sbjct: 238 KILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKME 297
Query: 438 RLKTKLMTELADCNTKIITPKNCQSVEM 465
LK K+ EL P N ++V +
Sbjct: 298 FLKQKIEQEL---RVNCYMPANGETVTL 322
>gi|34783058|gb|AAH00675.2| CPSF3L protein, partial [Homo sapiens]
Length = 473
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 190/324 (58%), Gaps = 9/324 (2%)
Query: 144 MDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+ DRHL A
Sbjct: 3 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 62
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALGRAQEL
Sbjct: 63 AWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELC 122
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
++L+ +W +PIY+++ L +K Y+ +I N++IR F N F+FKHI
Sbjct: 123 ILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKA 180
Query: 323 LNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+ I+S
Sbjct: 181 FDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILS 238
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
+++ + + MQV Y+SFSAHAD + + P +++LVHGE+ +M LK
Sbjct: 239 GQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ 298
Query: 442 KLMTELADCNTKIITPKNCQSVEM 465
K+ EL P N ++V +
Sbjct: 299 KIEQEL---RVNCYMPANGETVTL 319
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 161/500 (32%), Positives = 242/500 (48%), Gaps = 64/500 (12%)
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S ID +I+HFHLDH +LP+ E +KG VFMT+ T+ + ++L D +V D
Sbjct: 119 SNIDCAIISHFHLDHIGALPFLTEHLGYKGPVFMTYPTRGLGPIMLRDSAQVVTSRFRDA 178
Query: 134 LFDEQD-------INR---------------------------SMDKIEVLDFHQTVEVN 159
+ E +NR S+ + V+ + +
Sbjct: 179 IETESSTRGASILLNRNKKRKPLTAEQLDRFDPWGYTVDCVADSLSRAHVMQLKSSQTLG 238
Query: 160 GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY 219
++ Y AGHVLGAAMF+V+ G+ VLYTGD++ D+HL A +P +PDI I ESTY
Sbjct: 239 NMRITPYYAGHVLGAAMFLVECDGISVLYTGDFNMTPDKHLGPARVPSLNPDIMICESTY 298
Query: 220 GVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIP 279
+ Q R E V+H + GG+VLIP FA+GRAQEL +ILD YWS P
Sbjct: 299 ASIIRQARRSTEMELCTVVHDCLLAGGKVLIPVFAVGRAQELAIILDTYWSKLQL--RFP 356
Query: 280 IYYASPLAKKCMAVYQTYILSMNER-IRNQFANSNPFKFKHISPL-NSIDDFSDVGPSVV 337
IY+ L+++ + Y+ + L + R I N N F +H+ P NS ++ P V+
Sbjct: 357 IYFGGGLSERATSYYKLHSLWTDSRNIPNM--GDNCFSLEHMLPFENSF--LTEDRPMVL 412
Query: 338 MASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLN 397
A+PG + SGLS + +W + KN V+PGY V+GT +IS K + +G + +
Sbjct: 413 FATPGMVHSGLSLKACKLWAPNPKNLIVVPGYAVQGTPGNKLISGEKVIKTSSG-SFEVK 471
Query: 398 MQVHYISFSAHADYAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII 455
+V Y+SFSAHAD A +K ++ P N++LVHGE M + + D N +
Sbjct: 472 CKVRYLSFSAHADSAGIMRLIKHTKVQPKNLVLVHGEYDGMKKFAKHVNM---DVNIPVF 528
Query: 456 TPKNCQSVEMYF-NSEKMAKTIGRLAEKTPEVGETVSGILVKK----------GFTYQIM 504
P N Q + + +E M PE+ V+G+ ++ G +
Sbjct: 529 HPANGQEIAVTLAQTEDMVPVY-----HYPELNIEVAGLTLRATTQHDDPFDFGIKHLEQ 583
Query: 505 APDDLHIFSQLSTANITQRI 524
APD + S + QR+
Sbjct: 584 APDQIPAILLHSIPDEVQRV 603
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
IT LGAG +VGRSCV +++ + ILFDCG H +
Sbjct: 6 ITMLGAGQDVGRSCVVVTFPSRRILFDCGAHCGF 39
>gi|340386286|ref|XP_003391639.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Amphimedon queenslandica]
Length = 181
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 109/167 (65%), Positives = 135/167 (80%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDV 78
+ D L I PLGAG EVGRSC+ + +K K I+ DCGIHP SGM ALPY D I+ ID+
Sbjct: 15 EDSDLLTIRPLGAGQEVGRSCIMLEFKNKKIMLDCGIHPGLSGMDALPYTDMIESDEIDL 74
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
LLITHFHLDH +LP+FLEKTTFKGRVFMT ATKAIY+ LL+DY+KVS +S + ML+ E+
Sbjct: 75 LLITHFHLDHCGALPWFLEKTTFKGRVFMTPATKAIYRWLLSDYIKVSNISSDHMLYTEK 134
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 185
D+ +SMDKIE+++FHQ V+V+GIKF Y AGHVLGAAMFM++IAGV+
Sbjct: 135 DLEKSMDKIEIINFHQEVDVSGIKFTAYNAGHVLGAAMFMIEIAGVK 181
>gi|297267035|ref|XP_001114469.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Macaca mulatta]
Length = 234
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 108/163 (66%), Positives = 131/163 (80%)
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLN 324
LDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L
Sbjct: 9 LDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLK 68
Query: 325 SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP+
Sbjct: 69 SMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEPE 128
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
E+T M+G PL M V YISFSAH DY QTS F++ L PP+++
Sbjct: 129 EITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVV 171
>gi|124505029|ref|XP_001351256.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|3758842|emb|CAB11127.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 1017
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 212/394 (53%), Gaps = 35/394 (8%)
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
ID ++I+HFH+DH +LP+F E ++G + M++ TKA+ +LL D +V+ + E F
Sbjct: 170 IDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRVTDMKWEKKNF 229
Query: 136 DEQ-----------------------------DINRSMDKIEVLDFHQTVEVNGIKFWCY 166
+ Q +I +DK+ L ++T E+ + Y
Sbjct: 230 ERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINETFELGDMSITPY 289
Query: 167 TAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQP 226
AGHVLGA ++ +++ V+YTGDY+ D+HL +A +P +P+I I ESTY +
Sbjct: 290 YAGHVLGACIYKIEVRNFSVIYTGDYNTIPDKHLGSANIPSLNPEIFISESTYATYVRPT 349
Query: 227 RNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPL 286
+ E +++H + +GG+VLIP FA+GRAQEL ++LD+YW + H PIY+ L
Sbjct: 350 KKASELELCNLVHECVHKGGKVLIPVFAIGRAQELSILLDDYWKK-MKIH-YPIYFGCGL 407
Query: 287 AKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP-LNSIDDFSDVGPSVVMASPGGLQ 345
+ Y+ Y +N + N F F +ISP LN+ ++ P V+ A+PG L
Sbjct: 408 TENANKYYKIYSSWINSSCMSN-EKENLFDFANISPFLNNY--LNEKRPMVLFATPGMLH 464
Query: 346 SGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISF 405
+GLS + F W + +N V+PGY V+GT+ +I K+++L + ++ Y+SF
Sbjct: 465 TGLSLKAFKAWAGNPQNLIVLPGYCVQGTVGHKLIMGEKQISLDGTTYIKVLCKIIYLSF 524
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
SAHAD +K + P N+I VHGE + M +L
Sbjct: 525 SAHADSNGIQQLIKHVSPKNVIFVHGEKNGMQKL 558
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
++II LGAG VGRSCV + + + ++FDCG H Y P F+
Sbjct: 8 KIIIQVLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFN 54
>gi|340053150|emb|CCC47437.1| putative cleavage and polyadenylation specificity factor, fragment
[Trypanosoma vivax Y486]
Length = 584
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/281 (43%), Positives = 176/281 (62%), Gaps = 6/281 (2%)
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
VLI F L L YW H E +IPIYYAS LA++CM +YQT++ +MN+R++
Sbjct: 77 VLITHFHLDHCGALPYFW--YWEAHKELQHIPIYYASSLAQRCMKLYQTFVSAMNDRVKQ 134
Query: 308 QFAN-SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
Q AN NPF FK+I PL F D GP VV+ASPG LQSG+S +LF+ WC D++N +I
Sbjct: 135 QHANHRNPFVFKYIQPLVDTRSFEDNGPCVVLASPGMLQSGISLELFEKWCGDRRNGIII 194
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKEL-MPP 424
GY ++GT+AK ++S+P+E+T +G PL M+ + +SFSAH+D QT F++ L
Sbjct: 195 AGYCIDGTIAKDVLSKPREITKPDGKVLPLRMRTIQSVSFSAHSDGRQTRDFIQALPKTQ 254
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTP 484
++ILVHG + M +LK KL + AD K+ KN +++ + F+ ++ AK +G LA P
Sbjct: 255 HVILVHGNAGAMIQLKNKLQQDFADRGVKVYATKNQEAIRIPFSVQRTAKVLGSLASNPP 314
Query: 485 EVGETVSGILVKKG-FTYQIMAPDDLHIFSQLSTANITQRI 524
GE VSG+L+ G +Y I+ P D+ F+ L A I Q I
Sbjct: 315 RDGEFVSGVLLVSGQHSYSIVHPTDIPNFTDLDVAQIQQAI 355
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 62/81 (76%), Gaps = 4/81 (4%)
Query: 15 APVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS 74
APV D++ I P+G+G EVGRSCV + YKG++++ DCG HPA SG+ +LP+FD I+
Sbjct: 17 APV----DEVEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSINCG 72
Query: 75 AIDVLLITHFHLDHAASLPYF 95
ID++LITHFHLDH +LPYF
Sbjct: 73 EIDLVLITHFHLDHCGALPYF 93
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/421 (33%), Positives = 219/421 (52%), Gaps = 35/421 (8%)
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY-VKVSKVSVED 132
+ ID +I+HFH+DH +LP+ E+ + G V+MT+ TKA+ LLL D + SV+
Sbjct: 119 NTIDSAIISHFHIDHVGALPFLTEEIGYSGPVYMTYPTKALSPLLLRDSGIAAKTASVKS 178
Query: 133 ML-FDEQ---------------DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM 176
+L FD++ + M + L +V G+ + AGHVLGAAM
Sbjct: 179 LLNFDKRRKVEERPDPWGYSFNSVAECMKRSIPLQLRSAEKVEGLTVSPFYAGHVLGAAM 238
Query: 177 FMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTD 236
F+ + G +VLYTGD++ D+HL A++P PD+ I E+TY + Q + E +
Sbjct: 239 FLAESDGFKVLYTGDFNTVPDKHLGPAKVPSLEPDVLICETTYATFVRQSKKATEVELCN 298
Query: 237 VIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT 296
++H T+ GG+VLIP FA+GRAQEL +IL+ YW+N PIY+ L++K Y+
Sbjct: 299 LVHDTLINGGKVLIPVFAVGRAQELAIILNNYWNNLSLL--FPIYFGGGLSEKATNYYKL 356
Query: 297 YILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIW 356
+ S + NPF +++ + +D P V+ A+PG + +GLS + IW
Sbjct: 357 HS-SWTDNNNISKLKENPFAMENLLQFDQ-SFLNDNRPMVLFATPGMVHTGLSLKACKIW 414
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPK---------EVTLMNGLTAPLNM--QVHYISF 405
S+ KN +IPGY V+GT+ +IS K + T +N+ +V Y+SF
Sbjct: 415 SSNPKNLILIPGYCVQGTVGNKLISGTKGREYKIYTATTICIKTNTGVINIKCKVKYLSF 474
Query: 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
SAHAD +K + P NI+ VHGE M + + + L N + P N ++V
Sbjct: 475 SAHADSPGILKLIKHVRPKNIVFVHGELDSMKKFSKHITSTL---NIPVYYPANGETVAF 531
Query: 466 Y 466
+
Sbjct: 532 H 532
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY 59
L +T LGAG +VGRSCV +++ K ++FDCG H +
Sbjct: 4 LKVTILGAGQDVGRSCVVVTFPSKRVVFDCGAHCGF 39
>gi|403297740|ref|XP_003939710.1| PREDICTED: integrator complex subunit 11 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 499
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 176/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVEHGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P N++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPENVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGETVT 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|374253828|ref|NP_001243392.1| integrator complex subunit 11 isoform 5 [Homo sapiens]
gi|119576639|gb|EAW56235.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
gi|119576644|gb|EAW56240.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
Length = 499
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 177/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVNCYMPANGETVT 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|402852595|ref|XP_003891003.1| PREDICTED: integrator complex subunit 11 isoform 2 [Papio anubis]
Length = 499
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 177/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGETVT 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|397476280|ref|XP_003809535.1| PREDICTED: integrator complex subunit 11 isoform 3 [Pan paniscus]
Length = 499
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 177/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGETVT 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|426327396|ref|XP_004024504.1| PREDICTED: integrator complex subunit 11 isoform 4 [Gorilla gorilla
gorilla]
Length = 499
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 177/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGETVT 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|296206479|ref|XP_002750226.1| PREDICTED: integrator complex subunit 11 isoform 2 [Callithrix
jacchus]
Length = 499
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 8/302 (2%)
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 51 AYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIR 110
Query: 225 QPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYAS 284
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 111 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFST 168
Query: 285 PLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGG 343
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG
Sbjct: 169 GLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGM 226
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI 403
L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+
Sbjct: 227 LHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYM 286
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
SFSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 287 SFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGETV 343
Query: 464 EM 465
+
Sbjct: 344 TL 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|395840793|ref|XP_003793236.1| PREDICTED: integrator complex subunit 11 isoform 2 [Otolemur
garnettii]
Length = 499
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 176/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFITWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P +++LVHGE+ +M LK K+ E P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPQSVLLVHGEAKKMEFLKQKIEQEF---RVSCYMPANGETVA 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFS--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|10433243|dbj|BAB13943.1| unnamed protein product [Homo sapiens]
Length = 499
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 119/301 (39%), Positives = 176/301 (58%), Gaps = 8/301 (2%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 52 YYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L +W +PIY+++
Sbjct: 112 SKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLKTFWERMN--LKVPIYFSTG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGL 344
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG L
Sbjct: 170 LTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGML 227
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+S
Sbjct: 228 HAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMS 287
Query: 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVE 464
FSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 288 FSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVNCYMPANGETVT 344
Query: 465 M 465
+
Sbjct: 345 L 345
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ D++D D L I
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFN--------DDVD----DELEIK 50
Query: 83 HFHLDHAASLPYF 95
++ H F
Sbjct: 51 AYYAGHVLGAAMF 63
>gi|119576647|gb|EAW56243.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_i
[Homo sapiens]
Length = 502
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 8/302 (2%)
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 54 AYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIR 113
Query: 225 QPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYAS 284
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 114 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFST 171
Query: 285 PLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGG 343
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG
Sbjct: 172 GLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGM 229
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI 403
L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+
Sbjct: 230 LHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYM 289
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
SFSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 290 SFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVNCYMPANGETV 346
Query: 464 EM 465
+
Sbjct: 347 TL 348
>gi|374253826|ref|NP_001243391.1| integrator complex subunit 11 isoform 4 [Homo sapiens]
Length = 502
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 8/302 (2%)
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 54 AYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIR 113
Query: 225 QPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYAS 284
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 114 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFST 171
Query: 285 PLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGG 343
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG
Sbjct: 172 GLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGM 229
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI 403
L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+
Sbjct: 230 LHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYM 289
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
SFSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 290 SFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVNCYMPANGETV 346
Query: 464 EM 465
+
Sbjct: 347 TL 348
>gi|426327398|ref|XP_004024505.1| PREDICTED: integrator complex subunit 11 isoform 5 [Gorilla gorilla
gorilla]
Length = 502
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/302 (39%), Positives = 177/302 (58%), Gaps = 8/302 (2%)
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224
Y AGHVLGAAMF + + V+YTGDY+ DRHL AA + + P++ I ESTY +
Sbjct: 54 AYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIR 113
Query: 225 QPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYAS 284
+ RE+ F +H T+ +GG+VLIP FALGRAQEL ++L+ +W +PIY+++
Sbjct: 114 DSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFST 171
Query: 285 PLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGG 343
L +K Y+ +I N++IR F N F+FKHI + F+D GP VV A+PG
Sbjct: 172 GLTEKANHYYKLFIPWTNQKIRKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGM 229
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI 403
L +G S Q+F W ++KN ++PGY V+GT+ I+S +++ + + MQV Y+
Sbjct: 230 LHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYM 289
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
SFSAHAD + + P +++LVHGE+ +M LK K+ EL P N ++V
Sbjct: 290 SFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQKIEQEL---RVSCYMPANGETV 346
Query: 464 EM 465
+
Sbjct: 347 TL 348
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/438 (31%), Positives = 219/438 (50%), Gaps = 49/438 (11%)
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS------- 126
+++D +I+HFHLDH +LP+ E + G +++T+ T+A+ LLL D V+V+
Sbjct: 115 NSVDCSVISHFHLDHVGALPFLTEHIGYSGPIYLTYPTRALCPLLLRDSVQVTSTRTVPD 174
Query: 127 --------KVSVEDMLFDEQDINRSMDK---IEV---------------------LDFHQ 154
SV+ +L + + DK IE L
Sbjct: 175 DPNTISSINASVKSLLNCHTNTTYNTDKRRKIEERTDPWGYSLNSVAECMKRSIPLQLRA 234
Query: 155 TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICI 214
T V + Y AGHVLGA+MF+ + G +VLYTGD++ D+HL A++P PD+ I
Sbjct: 235 TETVGNLNLVPYYAGHVLGASMFLSECDGFKVLYTGDFNTIPDKHLGPAKVPTLEPDVLI 294
Query: 215 IESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPE 274
ESTY + Q + E +H T+ GG+VLIP FA+GRAQEL +IL+ YW+N
Sbjct: 295 CESTYATFVRQSKRATEMELCTTVHDTLINGGKVLIPVFAVGRAQELAIILNNYWNNLSI 354
Query: 275 FHNIPIYYASPLAKKCMAVYQTY-ILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVG 333
+ PIY+ L++K Y+ + + N I N NPF +++ + +D
Sbjct: 355 --SFPIYFGGGLSEKATNYYKLHSSWTNNNSITN--LRENPFSLRNLLQFDQ-SFLNDNR 409
Query: 334 PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLT 393
P V+ A+PG + +GLS + +W + N +IPGY V+GT+ +I+ K + G+
Sbjct: 410 PMVLFATPGMVHTGLSLKACKLWSQNPNNLILIPGYCVQGTVGNKLIAGEKTIKTNIGVM 469
Query: 394 APLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTK 453
+ +V Y+SFSAHAD +K + P NI+ VHGE M R + L
Sbjct: 470 N-IKCKVRYLSFSAHADSPGILQLIKHIRPKNIVFVHGELESMKRFSKHINNTLK---IP 525
Query: 454 IITPKNCQSVEMYFNSEK 471
+ P N Q+++ ++ K
Sbjct: 526 VYYPCNGQTIKFTKDTSK 543
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
IT LGAG +VGRSC+ +++ K ++FDCG H + P
Sbjct: 6 ITVLGAGQDVGRSCIVVTFPSKRVIFDCGAHCGFIDQRRYP 46
>gi|383859338|ref|XP_003705152.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Megachile
rotundata]
Length = 494
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 169/299 (56%), Gaps = 10/299 (3%)
Query: 166 YTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQ 225
Y AGHVLGAAMF + + ++YTGDY+ DRHL AA + + PD+ I ESTY +
Sbjct: 52 YYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRD 111
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASP 285
+ RE+ F +H I +GG+VLIP FALGRAQEL ++L+ YW +P+Y+A
Sbjct: 112 SKRCRERDFLKKVHECIDRGGKVLIPVFALGRAQELCILLETYWERMN--LKVPVYFALG 169
Query: 286 LAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS--IDDFSDVGPSVVMASPGG 343
L +K Y+ +I N++I+ F N F FKHI P + ID + G VV A+PG
Sbjct: 170 LTEKANNYYKMFITWTNQKIKKTFVQRNMFDFKHIKPFDKAYID---NPGAMVVFATPGM 226
Query: 344 LQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI 403
L +GLS Q+F W ++ N ++PG+ V+GT+ +++ + + N + M V Y+
Sbjct: 227 LHAGLSLQIFKKWAPNEANMVIMPGFCVQGTVGHKVLNGSRRIEFENRQIVEVKMAVEYM 286
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
SFSAHAD ++ P N++LVHGE +M LK K+ E T P N ++
Sbjct: 287 SFSAHADAKGIMQLIQYCEPKNVMLVHGEFAKMEFLKEKIKQEFG---TNCYNPANGET 342
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 8/47 (17%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ DE+D
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFN--------DEVD 44
>gi|85000301|ref|XP_954869.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303015|emb|CAI75393.1| hypothetical protein, conserved [Theileria annulata]
Length = 663
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 223/445 (50%), Gaps = 55/445 (12%)
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS------- 126
+++D +I+HFHLDH +LP+ E + G +++++ T+A+ LLL D V+V+
Sbjct: 115 NSVDCSIISHFHLDHVGALPFLTEHIGYSGPIYLSYPTRALCPLLLRDSVQVTSTRTVPD 174
Query: 127 --------KVSVEDMLFDEQDINRSMDK---IEV---------------------LDFHQ 154
SV+ +L + + DK IE L
Sbjct: 175 DPNSISSINASVKSLLNSHTNATFTPDKRRKIEEKADPWGYTLNSVAECMKRSIPLQLRA 234
Query: 155 TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICI 214
T V + Y AGHVLGA+MF+ + G +VLYTGD++ D+HL A++P PD+ I
Sbjct: 235 TETVGNLNLVPYYAGHVLGASMFLSECDGFKVLYTGDFNTIPDKHLGPAKVPTLEPDVLI 294
Query: 215 IESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPE 274
ESTY + Q + E +H T+ GG+VLIP FA+GRAQEL +IL+ YW+N
Sbjct: 295 CESTYATFVRQSKRATEMELCTTVHETLINGGKVLIPVFAVGRAQELAIILNNYWNNLSL 354
Query: 275 FHNIPIYYASPLAKKCMAVYQTY-ILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVG 333
+ PIY+ L++K Y+ + + N I N NPF +++ + +D
Sbjct: 355 --SFPIYFGGGLSEKATNYYKLHSSWTNNNNITN--LRENPFSLRNLLQFDQ-SFLNDNR 409
Query: 334 PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS------EPKEVT 387
P V+ A+PG + +GLS + +W + N +IPGY V+GT+ +I+ + +E +
Sbjct: 410 PMVLFATPGMVHTGLSLKACKLWSQNPSNLILIPGYCVQGTVGNKLIAGNESQYQYREKS 469
Query: 388 LMNGL-TAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTE 446
+ + + +V Y+SFSAHAD +K + P NI+ VHGE M R + +
Sbjct: 470 IKTNIGVMNIKCKVRYLSFSAHADSPGILQLIKHIRPKNIVFVHGELESMKRFSKHINST 529
Query: 447 LADCNTKIITPKNCQSVEMYFNSEK 471
L + P N Q+++ +S+K
Sbjct: 530 LK---IPVYYPSNGQTIKFTKDSDK 551
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
IT LGAG +VGRSCV +++ K ++FDCG H + P
Sbjct: 6 ITVLGAGQDVGRSCVVVTFPSKRVVFDCGAHCGFVDQRRYP 46
>gi|340501262|gb|EGR28065.1| hypothetical protein IMG5_183890 [Ichthyophthirius multifiliis]
Length = 685
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 156/255 (61%), Gaps = 26/255 (10%)
Query: 51 FDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHA 110
FDCG+H G LP FD++ ID++ ITHFHLDH A+LPY KT FKG+V+ T
Sbjct: 296 FDCGLHMGKQGYEQLPLFDKVKTDKIDIIFITHFHLDHCAALPYITSKTNFKGKVYATSP 355
Query: 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGH 170
T+AIYK +L D + ++ L+ DI RS+ IEV+DFHQ +E + IKF CY AGH
Sbjct: 356 TRAIYKHVLKDSTRDKSDNI--TLYKVDDIERSLKFIEVIDFHQEMEHDNIKFKCYPAGH 413
Query: 171 VLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR 230
VLGAAMF+V+I GVRVLYTGDYS E+D ++ AE+P + Q++Q +
Sbjct: 414 VLGAAMFLVEIEGVRVLYTGDYSTEKDILIQPAEIP------------HEKQMYQQLKVH 461
Query: 231 EKRFTDVI-------HSTISQGGRVLIPAFALGRAQELLLILDEYW-SNHPEFHNIPIYY 282
TDV+ + GG+ L+P ALGRAQE++LIL+++W N E +I I+Y
Sbjct: 462 ----TDVVIMNQEVKEKVVKNGGKCLLPVLALGRAQEIVLILEQFWKQNATELQDIKIHY 517
Query: 283 ASPLAKKCMAVYQTY 297
+ L +K ++Q Y
Sbjct: 518 TAELFQKANKIFQYY 532
>gi|294945156|ref|XP_002784572.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897691|gb|EER16368.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 213
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/184 (54%), Positives = 138/184 (75%), Gaps = 8/184 (4%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI---DPSAIDV 78
D L ITPLGAG EVGRSCV + ++G+T++FDCGIHPA++GM ALP+FD + D + +D+
Sbjct: 23 DTLEITPLGAGQEVGRSCVILKFRGRTVMFDCGIHPAHTGMTALPFFDHLSTADLTNVDL 82
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDMLFDE 137
LL+THFHLDH+ ++PY + +T FKGR +MTH T+ I +LL DY +VSK++ ED ++
Sbjct: 83 LLVTHFHLDHSGAVPYLIGRTDFKGRTYMTHPTRPICRLLWQDYARVSKITAAEDQVYGR 142
Query: 138 QDINRSMDKIEVLDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
DI++ M +I+ FHQTV ++ I F Y AGHVLGAAMF+V+I GVR+LYTGD+S
Sbjct: 143 TDIDKCMQRIDTCTFHQTVTISTPAGPISFTAYRAGHVLGAAMFVVEIDGVRLLYTGDFS 202
Query: 194 REED 197
RE D
Sbjct: 203 REVD 206
>gi|332030612|gb|EGI70300.1| Integrator complex subunit 11 [Acromyrmex echinatior]
Length = 536
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 143/437 (32%), Positives = 209/437 (47%), Gaps = 83/437 (18%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I P ID ++
Sbjct: 6 VTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPYF E + G ++MTH TKAI +LL D KV+ + E F Q
Sbjct: 66 ISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMV----DIAGVRVLYTGDYSR 194
I M K+ + HQ+V V+ ++ Y AGHVLGAAMF V D G ++ R
Sbjct: 126 IKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWVHECIDRGGKVLIPVFALGR 185
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA-F 253
+ ++CI+ TY ++ N++ +P F
Sbjct: 186 AQ--------------ELCILLETYWERM----NLK-------------------VPVYF 208
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALG L +K Y+ +I N++I+ F N
Sbjct: 209 ALG-----------------------------LTEKANNYYKMFITWTNQKIKKTFVQRN 239
Query: 314 PFKFKHISPLNS--IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
F FKHI P + ID + G VV A+PG L +GLS Q+F W ++ N ++PG+ V
Sbjct: 240 MFDFKHIKPFDKAYID---NPGAMVVFATPGMLHAGLSLQIFKKWAPNESNMVIMPGFCV 296
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+GT+ +++ + + N + M V Y+SFSAHAD ++ P N++LVHG
Sbjct: 297 QGTVGHKVLNGTRRIEFENRQIVEVKMAVEYMSFSAHADAKGIMQLIQYCEPKNVMLVHG 356
Query: 432 ESHEMGRLKTKLMTELA 448
E +M LK K+ E
Sbjct: 357 EFAKMEYLKEKIKQEFG 373
>gi|327408312|emb|CCA30123.1| unnamed protein product [Neospora caninum Liverpool]
Length = 1183
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/402 (32%), Positives = 199/402 (49%), Gaps = 49/402 (12%)
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
A+D ++THFHLDH +LP F T+Y+ V
Sbjct: 362 AVDACVVTHFHLDHCGALPTF------------------------TEYLDVWS------- 390
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNG-----IKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
F++ D+ S ++ L + G ++ + AGHVLGAAMF + I V+YT
Sbjct: 391 FEQSDVAASAERATALRLREAWREGGASEDALQLTPFYAGHVLGAAMFELKIGNTSVVYT 450
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD++ DRHL +A LP PD+ I E TY + + E+ F V+H T+++GG+VL
Sbjct: 451 GDFNTIPDRHLGSASLPCLRPDVLISECTYASFVRPSKRTVERDFCAVVHDTLTKGGKVL 510
Query: 250 IPAFALGRAQELLLILDEYWSN-HPEFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIR 306
IP FA+GRAQEL ++L+ YW H F PIY+A + ++ Y+ Y+ N +
Sbjct: 511 IPVFAVGRAQELCMLLENYWERMHLHF---PIYFAGGMTERANVYYRLYVHWSKANGSVD 567
Query: 307 NQFANSNP---FKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+ P F F HI P S S P V++A+PG L GL+ + W D+ N
Sbjct: 568 AGAGDELPTSAFSFPHILPFQS-SLLSAPTPLVLLATPGMLHGGLALKALKAWAGDQANL 626
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
++PGY V GT+ +I+ +++ L T + ++ Y+SFSAHAD + P
Sbjct: 627 VLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADSLGIQQLILNTQP 686
Query: 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++LVHGE M +L + D NT + TP Q++ +
Sbjct: 687 RSVVLVHGEKDGMEKLANVIRR---DFNTPVYTPATGQTISI 725
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI 71
L +T LGAG +VGRS VY+ + +LFDCG H P FD++
Sbjct: 175 LHVTVLGAGQDVGRSAVYVRLGQRCVLFDCGCHLGMKDARKFPLFDKL 222
>gi|45358944|ref|NP_988501.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|340624691|ref|YP_004743144.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|45047810|emb|CAF30937.1| Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop)
[Methanococcus maripaludis S2]
gi|339904959|gb|AEK20401.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 422
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 222/411 (54%), Gaps = 30/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ +G+ +I+ S +D ++++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNGLP------DINDSDVDAVVVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK ++F T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYF----NFK-KIFCNPPTADLMYNVWKDTVSLSKT------YKEEDIKKSMDVIKT 110
Query: 150 LDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+++ + +V IK Y AGH+LG++ +DI G ++LYTGD + E R LRAA+
Sbjct: 111 VNYREEKQVTSDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRAADTDFD 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + + R + EK+ D I TI GG+V+IP FA+GR+QE++++++
Sbjct: 171 EIDTIIIESTYGSPLDIKPARKVLEKQLIDEISETIDNGGKVIIPVFAVGRSQEIIVVIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L +Y Y +N +I+N N NPF + +
Sbjct: 231 NYMKSG-ALKEVPIYINGSLT-HTTGMYMGYSDWLNPKIKNAIENRINPFG----NLIKG 284
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D+ P +++++ G +Q G Q + + +N ++ GY EGT+ +++ E
Sbjct: 285 GDEVFSREPCIIISTSGMVQGGPVLQYLSL-LKNPRNKIILTGYQAEGTIGRSLEEGATE 343
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
V P+N +V I FSAHADY F+K++ P I++HGE ++
Sbjct: 344 VKPFK-RAIPVNGKVVKIEFSAHADYNSLLRFMKKIPQPDKAIVMHGERYQ 393
>gi|297737628|emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 174/319 (54%), Gaps = 11/319 (3%)
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRHL AA++ +
Sbjct: 190 VDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRL 249
Query: 209 SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEY 268
D+ I ESTY + + RE+ F +H ++ GG+VLIP FALGRAQEL ++LD Y
Sbjct: 250 QLDLLITESTYATTVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNY 309
Query: 269 WSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDD 328
W +PIY+++ L + Y+ I N+R++ +A N F FK++ +
Sbjct: 310 WERMNL--KVPIYFSAGLTIQANMYYKMLISWTNQRVKETYATHNAFDFKNVRSFDR-SL 366
Query: 329 FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KTIISEPKEVT 387
+ GP V+ A+PG + G S ++F +W + N +PGY + GT+ K +P ++
Sbjct: 367 INAPGPCVLFATPGMISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTKID 426
Query: 388 LMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL 447
L + + Q+H +SFS H D +K L P ++ILVHGE +M LK K+ ++L
Sbjct: 427 LDKDIQISVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDL 486
Query: 448 A-DC-----NTKIITPKNC 460
C N + P C
Sbjct: 487 GIQCYYPANNDTVCIPSTC 505
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SC ++ GK I+FDCG+H Y P F I S AID ++ITH
Sbjct: 8 LGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATK---AIYKLLLTDYVKVSKVSVEDM 133
FHLDH +LPYF E + G ++MT K A+Y + + K ++ E++
Sbjct: 68 FHLDHVGALPYFTEVCGYSGPIYMTVIPKQGGAVYSVRGYRFGKQKDINGENL 120
>gi|134045242|ref|YP_001096728.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132662867|gb|ABO34513.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 422
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 133/411 (32%), Positives = 223/411 (54%), Gaps = 30/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K +L DCG+ P+ +G+ +I+ S +D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKVLIDCGMDPSDNGLP------DINDSDVDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK +++ T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYF----NFK-KIYCNPPTADLMYNVWKDTVSLSKT------YREEDIKKSMDVIKT 110
Query: 150 LDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+++ + +V IK Y AGH+LG++ +DI G ++LYTGD + E R LRAA+
Sbjct: 111 VNYREEKQVTSDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRAADTDFD 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
+ D IIESTYG + + R + EK+ D I TI GG+V+IP FA+GR+QE++++++
Sbjct: 171 NIDTIIIESTYGSPLDIKPARKVLEKQLIDEISETIDNGGKVIIPVFAVGRSQEIIVVIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L +Y Y +N +I+N N NPF + +
Sbjct: 231 NYMKSG-ALKEVPIYINGSLT-HTTGMYMGYSDWLNPKIKNAIENRINPFG----NLIKG 284
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D+ P +++++ G +Q G Q + + +N ++ GY EGT+ +++ E
Sbjct: 285 GDEVFSREPCIIISTSGMVQGGPVLQYLSL-LKNPRNKIILTGYQAEGTIGRSLEEGATE 343
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
V P+N +V I FSAHADY F+K++ P I++HGE ++
Sbjct: 344 VKPFK-RAIPVNGKVVKIEFSAHADYNSLLRFMKKIPQPSKAIVMHGERYQ 393
>gi|41614872|ref|NP_963370.1| hypothetical protein NEQ076 [Nanoarchaeum equitans Kin4-M]
gi|40068596|gb|AAR38931.1| NEQ076 [Nanoarchaeum equitans Kin4-M]
Length = 635
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 145/452 (32%), Positives = 231/452 (51%), Gaps = 21/452 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIH----PAYSGMAALPYFDEIDPSAIDVLLI 81
++ LG ++VGRS + + K IL D G+ P + E D +D ++I
Sbjct: 191 VSFLGGASQVGRSALLLQTKESRILLDFGVDLSLPPNNKNAYPIVELPEFDVKELDAVVI 250
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K +KG V++T T I L L DY++++ + LF DI
Sbjct: 251 THAHLDHVGFVP-FLYKMGYKGPVYLTPPTLDIATLSLLDYLRIANEN-NVKLFSGDDIR 308
Query: 142 RSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDR 198
+ +++ QT ++ + +K Y AGH+LG+A+ ++IA VLYTGDY +
Sbjct: 309 NFVKHSITIEYGQTTDIASDVKLTFYNAGHILGSALAHLNIANGYSNVLYTGDYKVKPTF 368
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
A++PQ +I I ESTYG H+PR EK F + I + G++LIP +GRA
Sbjct: 369 LFDGAQIPQAKVNIAITESTYGDTYHKPREEVEKEFLSFVKEVIKRKGKLLIPVLGVGRA 428
Query: 259 QELL-LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPF- 315
QE+L L++ +N + +PIY + + A++ Y + E IRN+ A NPF
Sbjct: 429 QEILYLLVKSIRAN--KLDEVPIYLDG-VVWEITAIHTAYPEYLKEEIRNKILAGKNPFI 485
Query: 316 -KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
KF H +P N + PS+++A+ G L G S Q + D KNA Y T
Sbjct: 486 DKFVHRAPRNREEIVYSTEPSIILATSGMLVGGPSVQYLKLMAEDPKNAIAFVSYQGPNT 545
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVH-YISFSAHADYAQTSTFLKELMPPNIILVHGES 433
L + I S +EV + +G +N++V + FS HAD + +FL+ + P +++ HGE
Sbjct: 546 LGRQIQSGVREVEI-DGQLIKINLEVRSFEGFSGHADKGEIESFLRRVRPGRVVINHGER 604
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
++ L + L +L N + P+N ++ +
Sbjct: 605 SKVLHLASYLRKKL---NVETNAPRNMDALAL 633
>gi|336121871|ref|YP_004576646.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
gi|334856392|gb|AEH06868.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
Length = 422
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 138/412 (33%), Positives = 221/412 (53%), Gaps = 31/412 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G SCV + K IL DCG++P+ + + + I+PS +D ++++H HLDH
Sbjct: 8 GGCHQIGMSCVEIDTKKSKILLDCGMNPSDNRLPS------INPSDMDAVVVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK +++ T T + ++ D K+SK + E+DI ++M+ IE
Sbjct: 62 GAVPYF----NFK-KIYCTVPTVDLMYIVWKDISKLSKT------YGEKDIKQAMESIET 110
Query: 150 LDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++ + ++ I Y AGH+LG++ +D+ G +VLYTGD + E + LR A+
Sbjct: 111 LNYREEKKITKDISMKLYDAGHILGSSSIYLDVDGKKVLYTGDINEIETKTLRPADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + + R + EK+ D I TI +GG+V+IP FA+GRAQE++ I+
Sbjct: 171 EIDTLIIESTYGSPMDIKPARKVLEKQLVDEISKTIEKGGKVIIPVFAVGRAQEIMAIIS 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + N+P+Y L VY +Y +N +IRN N NPF +
Sbjct: 231 NYMRSG-LLKNVPVYVDGSLI-HATGVYLSYSEWLNPKIRNGLENRINPFGDVKKANRQI 288
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
ID +V+++ G +Q G Q + D KN ++ GY E TL + + KE
Sbjct: 289 IDKEDSC---IVISTSGMVQGGPVLQYLKL-LKDPKNKIILTGYQAEDTLGRQLEEGAKE 344
Query: 386 VT-LMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
+T N L P+N +V I FSAH DY +LK++ P + ++HGE ++
Sbjct: 345 ITPFKNKL--PINGEVVKIEFSAHGDYNSLIRYLKKIPKPKKVFVMHGERYQ 394
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 174/319 (54%), Gaps = 11/319 (3%)
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRHL AA++ +
Sbjct: 1384 VDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRL 1443
Query: 209 SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEY 268
D+ I ESTY + + RE+ F +H ++ GG+VLIP FALGRAQEL ++LD Y
Sbjct: 1444 QLDLLITESTYATTVRDSKYAREREFLKAVHKCVADGGKVLIPTFALGRAQELCILLDNY 1503
Query: 269 WSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDD 328
W +PIY+++ L + Y+ I N+R++ +A N F FK++ +
Sbjct: 1504 WERMN--LKVPIYFSAGLTIQANMYYKMLISWTNQRVKETYATHNAFDFKNVRSFDR-SL 1560
Query: 329 FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KTIISEPKEVT 387
+ GP V+ A+PG + G S ++F +W + N +PGY + GT+ K +P ++
Sbjct: 1561 INAPGPCVLFATPGMISGGFSLEVFKLWAPSEMNLVTLPGYCLAGTIGHKLTTGKPTKID 1620
Query: 388 LMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL 447
L + + Q+H +SFS H D +K L P ++ILVHGE +M LK K+ ++L
Sbjct: 1621 LDKDIQISVRCQIHQLSFSPHTDAKGIMDLVKFLSPKHVILVHGEKPKMASLKGKIESDL 1680
Query: 448 A-DC-----NTKIITPKNC 460
C N + P C
Sbjct: 1681 GIQCYYPANNDTVCIPSTC 1699
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SC ++ GK I+FDCG+H Y P F I S AID ++ITH
Sbjct: 8 LGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAIDCIVITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMT 108
FHLDH +LPYF E + G ++MT
Sbjct: 68 FHLDHVGALPYFTEVCGYSGPIYMT 92
>gi|159905675|ref|YP_001549337.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159887168|gb|ABX02105.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 422
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 221/411 (53%), Gaps = 30/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ +G+ +I S +D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNGLP------DIKDSDVDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK +++ T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYF----NFK-KIYCNPPTADLMYNVWKDTVSLSKT------YREEDIKKSMDVIKT 110
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+++ + +V IK Y AGH+LG++ +DI G ++LYTGD + E R LRAA+
Sbjct: 111 VNYREEKQVTPDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRAADTDFD 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + + R + EK+ D I TI GG+V+IP FA+GR+QE++++++
Sbjct: 171 EIDTIIIESTYGSPLDIKPARKVLEKQLIDEISETIENGGKVIIPVFAVGRSQEIIVVIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L +Y Y +N +I+N N NPF + +
Sbjct: 231 NYMKSG-ALKEVPIYINGSLT-HTTGMYMGYSDWLNPKIKNAIENRINPFG----NLIKG 284
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D+ P +++++ G +Q G Q + + +N ++ GY EGT+ +++ E
Sbjct: 285 GDEAFSKEPCIIISTSGMVQGGPVLQYLSL-LKNPRNKIILTGYQAEGTIGRSLEEGATE 343
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
V P+N +V I FSAHADY F+K++ P I++HGE ++
Sbjct: 344 VKPFK-RAIPVNGKVVKIEFSAHADYNSLLRFMKKIPQPSKAIVMHGERYQ 393
>gi|150402550|ref|YP_001329844.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150033580|gb|ABR65693.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 422
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 134/411 (32%), Positives = 221/411 (53%), Gaps = 30/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ +G+ +I S +D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNGLP------DITDSDVDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK +++ T + + D V +SK + E+DI +SMD I+
Sbjct: 62 GAIPYF----NFK-KIYCNPPTADLMYNVWKDTVSLSKT------YREEDIKKSMDVIKT 110
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+++ + +V IK Y AGH+LG++ +DI G ++LYTGD + E R LRAA+
Sbjct: 111 VNYREEKQVTPDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRAADTDFD 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + + R + EK+ D I TI GG+V+IP FA+GR+QE++++++
Sbjct: 171 EIDTIIIESTYGSPLDIKPARKVLEKQLIDEISETIENGGKVIIPVFAVGRSQEIIVVIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L +Y Y +N +I+N N NPF + +
Sbjct: 231 NYMKSG-ALKEVPIYINGSLT-HTTGMYMGYSDWLNPKIKNAIENRINPFG----NLIKG 284
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D+ P +++++ G +Q G Q + + +N ++ GY EGT+ +++ E
Sbjct: 285 GDEAFSKEPCIIISTSGMVQGGPVLQYLSL-LKNPRNKIILTGYQAEGTIGRSLEEGATE 343
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
V P+N +V I FSAHADY F+K++ P I++HGE ++
Sbjct: 344 VKPFK-RAIPVNGKVVKIEFSAHADYNSLLRFMKKIPQPSKAIVMHGERYQ 393
>gi|357618297|gb|EHJ71333.1| putative cleavage and polyadenylation specificity factor [Danaus
plexippus]
Length = 385
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/197 (52%), Positives = 134/197 (68%), Gaps = 3/197 (1%)
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
H +P ID F D+GP V+MASPG +QSGLSR+LF+ WC+D KN +I GY VEGTLAKT
Sbjct: 17 HQAP--GIDHFEDIGPCVIMASPGMMQSGLSRELFESWCTDPKNGVIIAGYCVEGTLAKT 74
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
I+SEP+E+T M+G PL M V YISFSAH DY QTS F+ L PP+++LVHGE +EM R
Sbjct: 75 ILSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFINILKPPHVVLVHGEQNEMSR 134
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKG 498
LK L E I TP+N Q + + F +K AK +G LA + P G + G+LVK+
Sbjct: 135 LKAALQREHRG-RLAIHTPRNTQQLALTFRGDKTAKVMGSLAMEAPVPGAQLQGVLVKRN 193
Query: 499 FTYQIMAPDDLHIFSQL 515
F Y I+AP DL+ ++ L
Sbjct: 194 FNYHILAPSDLNKYTDL 210
>gi|336121952|ref|YP_004576727.1| KH-domain/beta-lactamase-domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334856473|gb|AEH06949.1| KH-domain/beta-lactamase-domain protein [Methanothermococcus
okinawensis IH1]
Length = 635
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 224/437 (51%), Gaps = 28/437 (6%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAI 76
RE + ++ LG EVGR+C Y+ IL DCGI+ A G A P+FD E I
Sbjct: 175 REDCWIRMSFLGGAREVGRTCNYLQTPESRILIDCGINVAIDGDKAFPHFDAPEFSIEEI 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH +P + + G V+ + T+ + LL DY+ +++ + M +
Sbjct: 235 DAVVITHAHLDHCGFVPGLF-RYGYDGPVYCSKPTRDLMTLLQKDYLDIAEKEGKVMPYS 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYS 193
+DI + + +D+ T ++ IK + AGH+LG+A+ I V YTGD
Sbjct: 294 SKDIKKCVKHTIPIDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHIGDGLYNVAYTGDIK 353
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVL 249
E R L A + P+ + IIESTYG + R EK F +V+ TI + G+V+
Sbjct: 354 FEASRLLEPAVCQFPRL--ETIIIESTYGGYDDVLPDRAETEKEFLNVVAETIKRKGKVI 411
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ IRN+
Sbjct: 412 IPVFGIGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKNIRNRI 468
Query: 310 --ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF F+ + N+ + D P +++ + G L G S + F D+KNA
Sbjct: 469 FHEGDNPFLSEVFRKVKNTNNRRNIIDSNEPCIILTTSGMLSGGPSVEYFKSLAEDEKNA 528
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMN----GLTAPLNMQVHYI-SFSAHADYAQTSTFL 418
V GY EGTL + I KE+ +MN +N+ VH + FS H+D Q +L
Sbjct: 529 IVFVGYQAEGTLGRKIQRGWKEIPIMNRNGKSKAVKVNLSVHTLEGFSGHSDRKQLIKYL 588
Query: 419 KEL--MPPNIILVHGES 433
++L MP I+ VHGE+
Sbjct: 589 RKLKPMPERILTVHGEA 605
>gi|440783043|ref|ZP_20960854.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
gi|440219618|gb|ELP58829.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
Length = 828
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 226/435 (51%), Gaps = 18/435 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHF 84
I+ LG NEVG SC+ +S K IL DCGI + S LP F I D +D ++I+H
Sbjct: 3 ISFLGGANEVGGSCILISVSNKNILLDCGIRQS-SSKDPLPDFKTIQDKGGLDAIIISHA 61
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRS 143
H+DH SLP ++ F +++ T TK + K+LL D +K+ + +E L+ E D+
Sbjct: 62 HMDHIGSLPIISKEYPF-AKIYTTIMTKDLMKVLLYDSLKIMNNRELEIPLYAEADVENM 120
Query: 144 MDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAM-FMVDIAGVRVLYTGDYSREEDRHLR 201
M++I +++ + +E+ GIK + AGH+ GAA +++ G + Y+GD+S + +
Sbjct: 121 MNRIVAINYMREIEILKGIKLTFHIAGHIAGAACSYIISNEGT-IFYSGDFSIFSQKTID 179
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
++P+ PD+ I E+TYG +LH R + E+R D I G++LIPAFALGRAQE+
Sbjct: 180 GLKVPKLRPDVAIFETTYGDRLHSNREVEEQRLLDFIRECEVNKGKILIPAFALGRAQEI 239
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI-RNQFANSNPFKFKHI 320
LLI+ + N NI + Y + K VY+ L + + + PF +I
Sbjct: 240 LLIIKKAL-NKNIIKNIKV-YVDGMIKDINRVYKINPLYLKNSLGKKILKGVEPFYDDNI 297
Query: 321 SPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
P+++ + + P V+++S G L G S+ + S + ++ GY E +
Sbjct: 298 IPVDNKELRNKILEEKEPCVIVSSSGMLTGGYSQYYAEKIASMENGYIIMTGYQDEESPG 357
Query: 377 KTIIS----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
+ +++ + V +NG P+N V + SAH+D ++ + + L P NI +VHG
Sbjct: 358 RKLLNLLDKDEDRVIEINGKLIPVNCNVEKVGLSAHSDKSEIKSLINLLTPNNIFMVHGN 417
Query: 433 SHEMGRLKTKLMTEL 447
+ +L E+
Sbjct: 418 EEIVKSFTKELFKEV 432
>gi|312136618|ref|YP_004003955.1| kh-domain/beta-lactamase-domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224337|gb|ADP77193.1| KH-domain/beta-lactamase-domain protein [Methanothermus fervidus
DSM 2088]
Length = 650
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 250/468 (53%), Gaps = 29/468 (6%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFD--EIDPSAI 76
E D IT LG EVGRSC+Y+ IL DCG++ A + A PY + E I
Sbjct: 191 ENDWARITALGGFREVGRSCLYLQTPNSKILLDCGVNVAANDEKNAYPYLNIPEFILDEI 250
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
+ ++I+H HLDH+ +PY L ++G V+ + T+ + LL D++ +++ ++ F+
Sbjct: 251 EAVVISHAHLDHSGFVPY-LYHYGYRGPVYCSAPTRDLMALLQLDHIDIAEREGRELPFN 309
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYS 193
+D+N+ + L++ + ++ I+ + AGH+LG+A+ + I + ++YTGD+
Sbjct: 310 AKDVNKCLKHTITLEYGEVTDITPDIRLTLHNAGHILGSAILHLHIGDGQHNLVYTGDFK 369
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVL 249
E+ R L A + P+ + ++ESTYG + + R + EKR VI+ TI +GG+VL
Sbjct: 370 YEKTRLLEPAVTDFPRL--ETLVMESTYGGKEDIQPSREMAEKRLIKVIYDTIKRGGKVL 427
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FA+GRAQEL+++LDEY + IPI + + + A++ T +++ + +Q
Sbjct: 428 IPVFAVGRAQELMVVLDEYIKSGI-LEEIPI-FVDGMVWEATAIHTTRPEYLSKTLSDQI 485
Query: 310 AN--SNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF + + ++S D+ DV P V++++ G L G S + F C D+KN
Sbjct: 486 FHYGYNPFTSEIFNKVSSSDERKDVVEGEPCVILSTSGMLAGGNSVEYFKWLCEDEKNTL 545
Query: 365 VIPGYVVEGTLAKTIISEPKEVTL-MNGLTA--PLNMQVHYIS-FSAHADYAQTSTFLKE 420
V GY EG+L + + +++T NG + MQ+ I FS H+D Q ++
Sbjct: 546 VFVGYQAEGSLGRRLQKNRRDITFEENGKMKVYKVKMQIETIEGFSGHSDRKQLMKYVHN 605
Query: 421 LMP-PNIILV-HGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
L P P ILV HG +++ L + + + + P N ++V +Y
Sbjct: 606 LSPKPEKILVCHGNAYKSLDLASSIYKKY---RIETRAPLNLEAVRIY 650
>gi|261403765|ref|YP_003247989.1| beta-lactamase [Methanocaldococcus vulcanius M7]
gi|261370758|gb|ACX73507.1| beta-lactamase domain protein [Methanocaldococcus vulcanius M7]
Length = 421
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 217/413 (52%), Gaps = 33/413 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + IL DCG+ P +P ++D +ID ++I+H HLDH
Sbjct: 8 GGCQQIGMSCVEVESQKGKILLDCGLSP---DTGEIP---KVDDKSIDAVIISHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+LP++ FK +++ TH T + + D + + K F E+DI +M +E
Sbjct: 62 GALPFY----KFK-KIYCTHPTADLMFITWRDTLNLKKA------FGEEDIQNAMSSVEC 110
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++++ +N IKF Y AGH+LG+A +++ G ++LYTGD + R L +A+
Sbjct: 111 LNYYEERSINDNIKFKFYNAGHILGSASIYLEVDGKKILYTGDINENVSRTLLSADTDFD 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ I+ESTYG + + R E++ + I TI GG+V+IP FA+GRAQE+LLIL+
Sbjct: 171 EIDVLIVESTYGSPLDVKPARKTLERQLIEEIAETIENGGKVIIPVFAIGRAQEILLILN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L AVY +Y +N +I+N N NPF +
Sbjct: 231 NYMRSG-NLTEVPIYTDGSLI-HATAVYMSYTNWLNPKIKNMIENGINPF-----GEIKK 283
Query: 326 IDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP 383
DD + P +++++ G +Q G + + D KN ++ GY EGT+ + +
Sbjct: 284 ADDNLVFNKEPCIIVSTSGMVQGGPILKYLKL-LKDPKNKLILTGYQAEGTIGRELEEGA 342
Query: 384 KEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
+E+ P+N +V I FSAH DY ++K++ P I++HGE ++
Sbjct: 343 EEIQPFKN-KIPINGKVVKIEFSAHGDYNSLVRYIKKIPKPEKAIVMHGERYQ 394
>gi|39645207|gb|AAH13904.2| CPSF3L protein, partial [Homo sapiens]
Length = 429
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 164/281 (58%), Gaps = 8/281 (2%)
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
V+YTGDY+ DRHL AA + + P++ I ESTY + + RE+ F +H T+ +G
Sbjct: 2 VVYTGDYNMTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERG 61
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G+VLIP FALGRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++I
Sbjct: 62 GKVLIPVFALGRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKI 119
Query: 306 RNQFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
R F N F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN
Sbjct: 120 RKTFVQRNMFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMV 177
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
++PGY V+GT+ I+S +++ + + MQV Y+SFSAHAD + + P
Sbjct: 178 IMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPE 237
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++LVHGE+ +M LK K+ EL P N ++V +
Sbjct: 238 SVLLVHGEAKKMEFLKQKIEQEL---RVNCYMPANGETVTL 275
>gi|150400309|ref|YP_001324076.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150013012|gb|ABR55464.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 635
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 144/427 (33%), Positives = 223/427 (52%), Gaps = 28/427 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCIYHQTPESRILVDCGINIAVDDEKAFPHFDAPEFSIDEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DYV++S+ +++ + +DI ++
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVEISEKEGKNVPYSSKDIKNAIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ IK + AGH+LG+A+ + V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAIKLTLHNAGHILGSAISHCHVGDGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + R+ EK F +V+ T S+GG+V+IP F +GRAQ
Sbjct: 364 TCQFPRL--ETLIIESTYGGYDDVLPERDETEKEFLNVMLETTSRGGKVIIPVFGIGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ +RN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKAMRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVGPS-VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N + D + +++ + G L G S + F D+KNA V GY EG
Sbjct: 479 EVFKKVKNTNDRRNIMDGDEACIILTTSGMLSGGPSVEYFKNLAEDEKNAIVFVGYQSEG 538
Query: 374 TLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I KE+ LM NG + +N+ VH + FS H+D Q +L++L +P I
Sbjct: 539 TLGRKIQRGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRI 598
Query: 427 ILVHGES 433
+ VHGE+
Sbjct: 599 LTVHGEA 605
>gi|15668334|ref|NP_247130.1| putative mRNA 3'-end processing factor 3 [Methanocaldococcus
jannaschii DSM 2661]
gi|2495836|sp|Q57626.1|Y162_METJA RecName: Full=Uncharacterized protein MJ0162
gi|1590919|gb|AAB98146.1| putative mRNA 3'-end processing factor 3 [Methanocaldococcus
jannaschii DSM 2661]
Length = 421
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 220/413 (53%), Gaps = 33/413 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + +L DCG+ P +P ++D A+D ++++H HLDH
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSP---DTGEIP---KVDDKAVDAVIVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ FK +++ TH T + + D + ++K + E+DI +M+ IE
Sbjct: 62 GAIPFY----KFK-KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQHAMENIEC 110
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++++ ++ IKF Y AGH+LG+A +++ G ++LYTGD + R L A+
Sbjct: 111 LNYYEERQITENIKFKFYNAGHILGSASIYLEVDGKKILYTGDINEGVSRTLLPADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ IIESTYG + + R E++ + I TI GG+V+IP FA+GRAQE+LLI++
Sbjct: 171 EIDVLIIESTYGSPLDIKPARKTLERQLIEEISETIENGGKVIIPVFAIGRAQEILLIIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + + ++PIY L AVY +YI +N +I+N N NPF +
Sbjct: 231 NYIRSG-KLRDVPIYTDGSLI-HATAVYMSYINWLNPKIKNMVENRINPF-----GEIKK 283
Query: 326 IDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP 383
D+ + P +++++ G +Q G + + D KN ++ GY EGTL + +
Sbjct: 284 ADESLVFNKEPCIIVSTSGMVQGGPVLKYLKL-LKDPKNKLILTGYQAEGTLGRELEEGA 342
Query: 384 KEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
KE+ P+ +V I FSAH DY ++K++ P I++HGE ++
Sbjct: 343 KEIQPFKN-KIPIRGKVVKIEFSAHGDYNSLVRYIKKIPKPEKAIVMHGERYQ 394
>gi|374633103|ref|ZP_09705470.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
gi|373524587|gb|EHP69464.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
Length = 639
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/430 (32%), Positives = 228/430 (53%), Gaps = 31/430 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFD--EIDPSAIDVLLIT 82
IT LGA EVGRS V + +L D G++P+ SG P D ++ +D +++T
Sbjct: 181 ITALGAFQEVGRSAVLVETPESRVLLDVGVNPSVNSGERMFPKLDIDQLRLEDLDAVVLT 240
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH+ +P FL K ++G V+ T T+ I L+ D + +S+ + + +++ +
Sbjct: 241 HAHLDHSGMIP-FLFKYGYEGPVYATQPTRDIMALMQLDMLDISEKEGRPLPYSAKEVRK 299
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSREEDRH 199
+ LD+ + ++ I+ Y AGH++G+AM + I ++YTGD+ R
Sbjct: 300 ELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLHIGDGTHNLVYTGDFKYARTRL 359
Query: 200 L-RA-AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
L RA AE P+ D I+E+TYG Q R EK+ DVI+ TI++GG+VLIP A+GR
Sbjct: 360 LDRAVAEFPRV--DTLIMETTYGAQGQTNREESEKQLIDVINKTINRGGKVLIPVLAVGR 417
Query: 258 AQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSN 313
QE++L++++ PE IP+ Y + L + A++ Y + + +R+ F + N
Sbjct: 418 GQEIMLVINDAMKRKLIPE---IPV-YVTGLFDEVTAIHTAYPEWLGKEVRDSILFRDEN 473
Query: 314 PFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF FK I +D + PS+++A+ G L G + + F D KN+ V Y
Sbjct: 474 PFTSDYFKRIEGFR--EDIAQGEPSIILATSGMLNGGPAVEFFKYLAPDPKNSLVFVSYQ 531
Query: 371 VEGTLAKTIISEPKEVTLM--NGLTAPLNMQVHYI---SFSAHADYAQTSTFLKELMPP- 424
EGTL + + KE+ ++ +G + + + + FS H+D Q FL++++P
Sbjct: 532 AEGTLGRKVRDGAKEIQVVGRDGRVESIKVNLEHTPIDGFSGHSDRRQLLKFLEDMVPKP 591
Query: 425 -NIILVHGES 433
NIIL HGES
Sbjct: 592 RNIILNHGES 601
>gi|332796323|ref|YP_004457823.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694058|gb|AEE93525.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 638
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 230/437 (52%), Gaps = 31/437 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVLLIT 82
IT LGA E+GRS + + +L D G++P+ + G P D ++ +D ++IT
Sbjct: 180 ITALGAFQEIGRSAILVETPESRVLLDTGVNPSVNFGERMFPKLDIDQLRLEDLDAVVIT 239
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +PY K ++G V+ T T+ + L+ D + V++ + + +++ +
Sbjct: 240 HAHLDHCGMVPYLF-KYGYEGPVYTTPPTRDVMALMQLDLLDVAEKDGRPLPYSAKEVRK 298
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDRH 199
+ LD+ + ++ I+ Y AGH+LG+AM + I G ++YTGD+ + R
Sbjct: 299 ELLHTITLDYEEVTDIAPDIRLTFYNAGHILGSAMVHLHIGEGTHNIVYTGDFKYAKTRL 358
Query: 200 LRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
L A E P+ D I+E+TYG Q R EK+ D+I++TI++GG+VLIP A+GR
Sbjct: 359 LDRATSEFPKV--DTLIMETTYGAQEQTNREESEKQLIDIINNTINRGGKVLIPVLAVGR 416
Query: 258 AQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSN 313
QE++L+++ N PE +P+ Y + L + A++ Y ++ +R+ + + N
Sbjct: 417 GQEMMLVINNALKNKLIPE---VPV-YVTGLFDEVTAIHTAYPEWLSREVRDAILYRDEN 472
Query: 314 PF---KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF +FK I +D + PS+++A+ G L G + + F D KN+ V Y
Sbjct: 473 PFVSDQFKRIEGYR--EDIAQGEPSIILATSGMLNGGPAVEFFKAMAPDSKNSIVFVSYQ 530
Query: 371 VEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKELM--P 423
EGTL + + KEV ++ +G +NM+V + FS H+D Q FL +L P
Sbjct: 531 AEGTLGRKVRDGAKEVQIIGRDGRVENIQINMEVKVVDGFSGHSDRRQLLKFLHDLTPKP 590
Query: 424 PNIILVHGESHEMGRLK 440
NIIL HGE + M K
Sbjct: 591 KNIILDHGEYNSMMTFK 607
>gi|333910182|ref|YP_004483915.1| KH-domain/beta-lactamase-domain-containing protein [Methanotorris
igneus Kol 5]
gi|333750771|gb|AEF95850.1| KH-domain/beta-lactamase-domain protein [Methanotorris igneus Kol
5]
Length = 635
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 143/439 (32%), Positives = 228/439 (51%), Gaps = 28/439 (6%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAI 76
RE + ++ LG EVGR+C+Y+ +L DCGI+ A G A P+FD E I
Sbjct: 175 REDYWVRVSFLGGAREVGRTCLYLQTPDSRVLIDCGINIAVEGDRAYPHFDAPEFSIEEI 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH +P + + G V+ T T+ + LL DY+ +++ +D+ +
Sbjct: 235 DAVVITHAHLDHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLFKDYLDIAEKEGKDVPYT 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYS 193
+DI + +D+ T ++ IK + AGH+LG+A+ I + + YTGD
Sbjct: 294 AKDIKTCVKHTIPIDYGVTTDITPTIKLTLHNAGHILGSAIAHCHIGDGQYNIAYTGDIK 353
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVL 249
E R L A + P+ + IIESTYG + + EK ++ T+ +GG+VL
Sbjct: 354 FEASRLLEPAVCQFPRL--ETLIIESTYGSFDDVLPEKEETEKELLKIVSETLQRGGKVL 411
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ IRN+
Sbjct: 412 IPVFGVGRAQELMLVLEEGYNQG--VFNAPVYLDG-MIWEATAIHTAYPEYLSKVIRNRI 468
Query: 310 --ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF FK + N D P +++A+ G L G S + F D+KN
Sbjct: 469 FHEGDNPFLSEVFKRVGSTNERRRVIDSDEPCIILATSGMLTGGPSVEYFKNLAPDEKNT 528
Query: 364 CVIPGYVVEGTLAKTIISEPKE--VTLMNGLTA--PLNMQVHYI-SFSAHADYAQTSTFL 418
V GY EGTL + + KE +T NG T P+ M++H + FS H+D Q +L
Sbjct: 529 LVFVGYQAEGTLGRKVQKGWKEIPITTKNGKTKSIPIKMEIHTLEGFSGHSDRKQLIKYL 588
Query: 419 KEL--MPPNIILVHGESHE 435
++L MP I+++HGE+++
Sbjct: 589 RKLKPMPERILMIHGEANK 607
>gi|134045919|ref|YP_001097405.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132663544|gb|ABO35190.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 635
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 144/426 (33%), Positives = 220/426 (51%), Gaps = 28/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVDDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI +
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDIKNCIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ IK + AGH+LG+A+ + V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAIKLTLHNAGHILGSAIAHCHVGEGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + R+ EK F VI TI++ G+V+IP F +GRAQ
Sbjct: 364 VCQFPRL--ETLIIESTYGGYDDVLPERDETEKEFLRVIAETIARKGKVIIPVFGIGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ +RN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--MFNAPVYLDG-MIWEATAIHTAYPEYLSKNMRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N + D PS+++ + G L G S + F ++KNA V GY EG
Sbjct: 479 EVFKKVKNTNDRRNIIDSDEPSIILTTSGMLSGGPSVEYFKNLADNEKNAIVFVGYQSEG 538
Query: 374 TLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I KE+ LM NG + +N+ VH + FS H+D Q +L++L +P I
Sbjct: 539 TLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRI 598
Query: 427 ILVHGE 432
+ VHGE
Sbjct: 599 LTVHGE 604
>gi|320449268|ref|YP_004201364.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
gi|320149437|gb|ADW20815.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
Length = 431
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 130/414 (31%), Positives = 208/414 (50%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV SC + +G+ IL DCG+ F DP A+D +++TH H
Sbjct: 3 IVPFGAAREVTGSCHLLLAEGRKILLDCGMFQGREEEKNHTPFG-FDPQAVDAVVLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +E F+E+D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATQATFLLMQIILQDALKV----METPFFEEEDVEEALR 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ +L+F + + + + AGH+ G+A +V G ++Y+GD + L L
Sbjct: 117 HVRLLEFGEWLRLGDLTLTFGQAGHLPGSAFVVVQGEGKTLVYSGDLGNRQKTVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P D+ + E TYG + H+ + F +++ T+ QGG+V IP+FA+ RAQE+L +L
Sbjct: 177 PP-KADLILCEGTYGDRPHRSFAATVQEFLEILERTLGQGGKVFIPSFAVERAQEILFLL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
E P+ PIY SP+A++ + +Y + +E ++ F A NPF+ + + +
Sbjct: 236 YENGHRLPQ---APIYLDSPMAERVLDLYPRLVRYFSEEVQAYFLAGKNPFRPRGLRVVE 292
Query: 325 SIDDFS----DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
S+++ + GP V++A G L G SD KN V GY G L II
Sbjct: 293 SVEESKALNREPGPMVIIAGSGMLTGGRILHHLKHGLSDPKNTLVFVGYQPRGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
P+ + L+ G PL VH + FS HA + +L P +ILVHGE
Sbjct: 353 QRPERIRLL-GQEIPLRASVHTLGGFSGHAGQDELLDWLHG--QPRVILVHGEE 403
>gi|374636367|ref|ZP_09707940.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
gi|373559249|gb|EHP85554.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
Length = 635
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 218/426 (51%), Gaps = 28/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y+ IL DCGI+ A G A P+FD E ID ++ITH HL
Sbjct: 185 LGGAREVGRTCLYLQTPDSRILIDCGINIAVEGDRAYPHFDAPEFSIEGIDAVVITHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DY+ +++ +D+ + +DI +
Sbjct: 245 DHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLFKDYLDIAEKEGKDVPYASKDIKTCVKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
+D+ T ++ IK + AGH+LG+A+ I + YTGD E R L A
Sbjct: 304 TMPIDYGVTTDITPTIKLTLHNAGHILGSAIAHCHIGDGQYNIAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + + EK ++ T+ +GG+VLIP F +GRAQ
Sbjct: 364 VCQFPRL--ETLIIESTYGSYDDILPEKEETEKELLKIVSETLQRGGKVLIPVFGVGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ IRN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKVIRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N D P +++A+ G L G S + F D+KN V GY EG
Sbjct: 479 EVFKRVGSTNERRRVIDGDEPCIILATSGMLTGGPSVEYFKNLAPDEKNTLVFVGYQAEG 538
Query: 374 TLAKTIISEPKE--VTLMNGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + + KE +T NG T P+ M +H + FS H+D Q +L++L MP I
Sbjct: 539 TLGRKVQKGWKEIPITTKNGKTKSIPIKMDIHTLEGFSGHSDRKQLIKYLRKLKPMPERI 598
Query: 427 ILVHGE 432
+++HGE
Sbjct: 599 LMIHGE 604
>gi|256810164|ref|YP_003127533.1| beta-lactamase [Methanocaldococcus fervens AG86]
gi|256793364|gb|ACV24033.1| beta-lactamase domain protein [Methanocaldococcus fervens AG86]
Length = 421
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 219/411 (53%), Gaps = 29/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + +L DCG+ P +P ++D ID ++I+H HLDH
Sbjct: 8 GGCQQIGMSCVEVETQKSRVLLDCGMSP---DTGEIP---KVDDKLIDAVIISHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ FK +++ TH T + + D + ++K + E+DI ++M+ IE
Sbjct: 62 GAVPFY----KFK-KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQQAMESIEC 110
Query: 150 LDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++++ ++ + IKF Y AGH+LG+A ++ G ++LYTGD + R L A+
Sbjct: 111 LNYYEERQITDDIKFKFYNAGHILGSASIYLEADGKKILYTGDINEGISRTLLPADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ IIESTYG + + R EK+ + I TI GG+V+IP FA+GRAQE+LLI++
Sbjct: 171 EIDVLIIESTYGSSLDIKPARKTLEKQLIEEIAETIENGGKVIIPVFAIGRAQEILLIIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + + +PIY L AVY +YI +N +I+N N NPF + +
Sbjct: 231 NYMRSG-KLKEVPIYTDGALI-HATAVYLSYINWLNPKIKNMVENRINPFGVVKKADESL 288
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
+ + P +++++ G +Q G + + D KN ++ GY EGTL + + KE
Sbjct: 289 VFNKE---PCIIVSTSGMVQGGPVLKYLKL-LKDPKNKLILTGYQAEGTLGRELEEGAKE 344
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
+ P+ +V I FSAH DY ++K++ P I++HGE ++
Sbjct: 345 IQPFKN-KIPVRGKVVKIEFSAHGDYNSLVRYIKKIPKPEKAIVMHGERYQ 394
>gi|159904583|ref|YP_001548245.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159886076|gb|ABX01013.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 635
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 218/426 (51%), Gaps = 28/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI +
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDIKNCIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ IK + AGH+LG+A+ + V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAIKLTLHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + R+ EK F VI TI++ G+ +IP F +GRAQ
Sbjct: 364 VCQFPRL--ETLIIESTYGGYDDVLPERDETEKEFLRVIAETIARKGKAIIPVFGIGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ +RN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKNMRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N + D P +++ + G L G S + F D+KNA V GY EG
Sbjct: 479 EVFKKVKNTNDRRNIIDSDEPGIILTTSGMLSGGPSVEYFKNLADDEKNAIVFVGYQSEG 538
Query: 374 TLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I KE+ LM NG + +N+ VH + FS H+D Q +L++L +P I
Sbjct: 539 TLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRI 598
Query: 427 ILVHGE 432
+ VHGE
Sbjct: 599 LTVHGE 604
>gi|150403634|ref|YP_001330928.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150034664|gb|ABR66777.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 635
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 218/426 (51%), Gaps = 28/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI +
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDIKNCIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ IK + AGH+LG+A+ + V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAIKLTLHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + R+ EK F VI TI++ G+ +IP F +GRAQ
Sbjct: 364 VCQFPRL--ETLIIESTYGGYDDVLPERDETEKEFLRVIAETIARKGKAIIPVFGIGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ +RN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKNMRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N + D P +++ + G L G S + F D+KNA V GY EG
Sbjct: 479 EVFKKVKNTNDRRNIIDSDEPGIILTTSGMLSGGPSVEYFKNLADDEKNAIVFVGYQSEG 538
Query: 374 TLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I KE+ LM NG + +N+ VH + FS H+D Q +L++L +P I
Sbjct: 539 TLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRI 598
Query: 427 ILVHGE 432
+ VHGE
Sbjct: 599 LTVHGE 604
>gi|333910570|ref|YP_004484303.1| beta-lactamase domain-containing protein [Methanotorris igneus Kol
5]
gi|333751159|gb|AEF96238.1| beta-lactamase domain protein [Methanotorris igneus Kol 5]
Length = 419
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 216/412 (52%), Gaps = 33/412 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G SC+ + K IL DCG+ P + A+P DE +D ++++H HLDH
Sbjct: 8 GGCHQIGMSCIEIDTKKSRILLDCGMDPTNN---AIPKVDE----NVDAVIVSHAHLDHC 60
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ FK +++ T T + + D + +SK + E+DI RS++ E
Sbjct: 61 GAIPFY----KFK-KIYCTTPTADLMYITWKDTLNLSKS------YKEEDIQRSLNNTET 109
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++ + ++ I Y AGH+LG+A +DI G ++LYTGD + R L A+
Sbjct: 110 LNYKEEKQITEDITLKFYNAGHILGSASIYLDIDGKKILYTGDINETPTRTLLPADTDVD 169
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ IIESTYG + + R EK+ D I TI GG+V+IP FA+GRAQE+LLI++
Sbjct: 170 EIDVLIIESTYGSPLDIKPSRKALEKQLIDEIAETIENGGKVIIPVFAIGRAQEILLIIN 229
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + + ++P+Y L +Y +Y+ +N +++N N NPF L
Sbjct: 230 NYIRSG-KLKDVPVYVDGSLI-HATGIYMSYLDWLNPKLKNMVENRVNPF-----GELKK 282
Query: 326 IDD-FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
D+ + P +++++ G +Q G Q + S KN ++ GY EGTL + + +
Sbjct: 283 ADNSVFNKEPCIIISTSGMVQGGPVLQYLSLLKS-PKNKLILTGYQAEGTLGRELEEGAE 341
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
E+T P+ +V I FSAH DY ++K++ P +VHGE ++
Sbjct: 342 EITPFKN-KIPVRGKVVKIEFSAHGDYNSLVRYIKKIPTPKKAFVVHGERYQ 392
>gi|289191606|ref|YP_003457547.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
gi|288938056|gb|ADC68811.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
Length = 421
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 216/411 (52%), Gaps = 29/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + +L DCG+ P +P ++D ID ++++H HLDH
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSP---DTGEIP---KVDDKVIDAVIVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ FK +++ TH T + + D + ++K + E+DI +M+ IE
Sbjct: 62 GAIPFY----KFK-KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQYAMENIEC 110
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++++ ++ IKF Y AGH+LG+A ++ G ++LYTGD + R L A+
Sbjct: 111 LNYYEERQITENIKFKFYNAGHILGSASIYLEADGKKILYTGDINEGVSRTLLPADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ IIESTYG + + R EK+ + I TI GG+V+IP FA+GRAQE+LLI++
Sbjct: 171 EIDVLIIESTYGSPLDIKPARKTLEKQLIEEIAETIENGGKVIIPVFAIGRAQEILLIIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L AVY +YI +N +I+N N NPF + N
Sbjct: 231 NYMRSGG-LKEVPIYTDGSLI-HATAVYMSYINWLNPKIKNMVENRINPFGEIKKADENL 288
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
+ + P +++++ G +Q G + + D KN ++ GY EGTL + + KE
Sbjct: 289 VFNKE---PCIIVSTSGMVQGGPVLKYLKL-LKDPKNKLILTGYQAEGTLGRELEEGAKE 344
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
+ P+ +V I FSAH DY ++K++ P I++HGE ++
Sbjct: 345 IQPFKN-KIPIRGKVVKIEFSAHGDYNSLVRYIKKIPKPEKAIVMHGERYQ 394
>gi|146305000|ref|YP_001192316.1| beta-lactamase domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145703250|gb|ABP96392.1| beta-lactamase domain protein [Metallosphaera sedula DSM 5348]
Length = 642
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/440 (30%), Positives = 231/440 (52%), Gaps = 31/440 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVLLIT 82
+T LGA EVGRS V + +L D G++P+ + G P D ++ +D +++T
Sbjct: 181 VTALGAFQEVGRSAVLVETPESRVLMDVGVNPSVNFGERMFPKLDIDQLRLEDLDAVVLT 240
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH+ +P FL K + G V+ T T+ I L+ D + V+ + + +++ +
Sbjct: 241 HAHLDHSGMIP-FLFKYGYDGPVYTTQPTRDIMALMQLDLLDVADKEGRPLPYSAKEVRK 299
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDRH 199
+ LD+ + ++ I+ Y AGH++G+AM + I GV ++YTGD+ R
Sbjct: 300 ELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLHIGDGVHNLVYTGDFKYARTRL 359
Query: 200 LRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
L A E P+ D I+E+TYG QL R+ EK+ DVI+ T+++GG+VLIP A+GR
Sbjct: 360 LDRAVSEFPRV--DTLIMETTYGAQLQTNRDESEKQLIDVINKTLNRGGKVLIPVLAVGR 417
Query: 258 AQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSN 313
QE++L++++ PE +P+ Y + L + A++ Y + + +R+ F + N
Sbjct: 418 GQEIMLVINDAMKRKLIPE---VPV-YVTGLFDEVTAIHTAYPEWLGKEVRDSILFRDEN 473
Query: 314 PFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF FK I +D ++ PS+++A+ G L G + + F D KN+ + Y
Sbjct: 474 PFTSEFFKRIEGYR--EDIAEGEPSIILATSGMLNGGPAVEFFKQLAPDPKNSLIFVSYQ 531
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-----FSAHADYAQTSTFLKELMPP- 424
EGTL + + +E+ ++ N++V+ + FS H+D Q FL++L P
Sbjct: 532 AEGTLGRKVRDGAREIQIIGRDGRVDNIKVNLETTPIDGFSGHSDRRQLLKFLEDLTPKP 591
Query: 425 -NIILVHGESHEMGRLKTKL 443
NIIL HGE+ + K +
Sbjct: 592 RNIILNHGEASAIREFKKNI 611
>gi|374636870|ref|ZP_09708413.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557613|gb|EHP84014.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 419
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 217/412 (52%), Gaps = 33/412 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G SC+ + K IL DCG+ P + A+P DE +D ++++H HLDH
Sbjct: 8 GGCHQIGMSCIEIDTKKSKILLDCGMDPTNN---AIPKVDE----NVDAVVVSHAHLDHC 60
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ F+ +++ T T + + D + +SK + E+DI RS++ EV
Sbjct: 61 GAIPFY----KFR-KIYCTTPTADLMYITWKDTLNLSKS------YKEEDIQRSLNNTEV 109
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++ + ++ I Y AGH+LG+A +DI G ++LYTGD + R L A+
Sbjct: 110 LNYREERQITEDITLKFYNAGHILGSASICLDIDGKKILYTGDINETPTRTLLPADKDID 169
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ IIESTYG + + R EK+ D I TI GG+V+IP FA+GRAQE+LLI++
Sbjct: 170 EIDVLIIESTYGSPLDIKPSRKTLEKQLIDEIAETIENGGKVIIPVFAIGRAQEILLIIN 229
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + + ++P+Y L +Y +Y+ +N +++N N NPF L
Sbjct: 230 NYIRSG-KLKDVPVYVDGSLI-HATGIYMSYLDWLNPKLKNMVENRINPF-----GELKK 282
Query: 326 IDD-FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
D+ + P +++++ G +Q G Q + S KN ++ GY EGTL + + +
Sbjct: 283 ADNGVFNKEPCIIVSTSGMVQGGPVLQYLSLLKS-PKNKLILTGYQAEGTLGRALEEGVE 341
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
E+T P+ +V I FSAH DY ++K++ P +VHGE ++
Sbjct: 342 EITPFKN-KIPVRGKVVKIEFSAHGDYNSLVRYIKKIPTPKKAFVVHGERYQ 392
>gi|340623726|ref|YP_004742179.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|339903994|gb|AEK19436.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 635
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 218/426 (51%), Gaps = 28/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI +
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDIKNCIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ IK + AGH+LG+A+ + V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + R+ EK F VI TI++ G+ +IP F +GRAQ
Sbjct: 364 VCQFPRL--ETLIIESTYGGYDDVLPERDETEKEFLRVIAETIARKGKAIIPVFGIGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ +RN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKNMRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N + D P +++ + G L G S + F D+KN+ V GY EG
Sbjct: 479 EVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYFKNLADDEKNSIVFVGYQSEG 538
Query: 374 TLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I KE+ LM NG + +N+ VH + FS H+D Q +L++L +P I
Sbjct: 539 TLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRI 598
Query: 427 ILVHGE 432
+ VHGE
Sbjct: 599 LTVHGE 604
>gi|45358257|ref|NP_987814.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|44921014|emb|CAF30250.1| Beta-lactamase-like:KH domain [Methanococcus maripaludis S2]
Length = 635
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 218/426 (51%), Gaps = 28/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y IL DCGI+ A A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DYV +++ +++ + +DI +
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYVDITEKEGKNVPYSSKDIKNCIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ IK + AGH+LG+A+ + V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + IIESTYG + R+ EK F VI TI++ G+ +IP F +GRAQ
Sbjct: 364 VCQFPRL--ETLIIESTYGGYDDVLPERDETEKEFLRVIAETIARKGKAIIPVFGIGRAQ 421
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF-- 315
EL+L+L+E ++ N P+Y + + A++ Y +++ +RN+ NPF
Sbjct: 422 ELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKNMRNRIFHEGDNPFLS 478
Query: 316 -KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FK + N + D P +++ + G L G S + F D+KN+ V GY EG
Sbjct: 479 EVFKKVKNTNDRRNIMDSDEPGIILTTSGMLSGGPSVEYFKNLADDEKNSIVFVGYQSEG 538
Query: 374 TLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I KE+ LM NG + +N+ VH + FS H+D Q +L++L +P I
Sbjct: 539 TLGRKIQKGFKEIPLMGKNGRSKAVKVNLSVHTLEGFSGHSDRKQLIKYLRKLKPIPDRI 598
Query: 427 ILVHGE 432
+ VHGE
Sbjct: 599 LTVHGE 604
>gi|223478352|ref|YP_002582770.1| RNA-metabolising metallo-beta-lactamase family protein
[Thermococcus sp. AM4]
gi|214033578|gb|EEB74405.1| RNA-metabolising metallo-beta-lactamase family [Thermococcus sp.
AM4]
Length = 648
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 236/468 (50%), Gaps = 36/468 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A + A P+FD +D +D
Sbjct: 188 ITGLGGFREVGRSALLVQTDESYVLVDFGVNIAAMRDPLKAFPHFDAPEFRYVLDEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGMEPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + ++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 308 RDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDFKF 367
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
R L A P+ + ++ESTYG PR EKR +VIH TI +GG+VLI
Sbjct: 368 IPTRLLEPAVSRFPRV--ETLVMESTYGGSNDYQMPREEAEKRLIEVIHHTIKRGGKVLI 425
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PA A+GRAQE++++L+EY ++PIY + + A++ Y ++ R+R Q
Sbjct: 426 PAMAVGRAQEIMMVLEEYARVG--GIDVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIF 482
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF FK ++ D D G P++++A+ G L G S + F D+KN+
Sbjct: 483 HEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDEKNSI 542
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLK 419
+ Y EGTL + + +E+ L+ +G T +NM+VH I FS HAD + +++
Sbjct: 543 IFVSYQAEGTLGRQVQRGLREIPLVGEDGRTEVVQVNMEVHTIDGFSGHADRRELISYVA 602
Query: 420 EL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
L P +I VHGE H+ L + L + N P N ++ +
Sbjct: 603 RLRPRPERVITVHGEPHKCLDLASSLHKKF---NLSTRAPNNLDAIRL 647
>gi|150401471|ref|YP_001325237.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150014174|gb|ABR56625.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 426
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 221/411 (53%), Gaps = 25/411 (6%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G SCV + K IL DCG++P+ + +LP +I+P+ ID ++++H HLDH
Sbjct: 8 GGCHQIGMSCVEIDTKKSKILVDCGMNPSDN---SLP---KINPNDIDAVVVSHSHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK ++ T + + +L D K+SK + E++I ++M+ I+
Sbjct: 62 GAVPYF----NFKNPIYSTIPSVDLMYILWKDISKLSKT------YPEENIQKAMNNIKA 111
Query: 150 LDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+++ + ++ I Y AGH+LG++ +DI G ++LYTGD + E R L++A+
Sbjct: 112 VNYREPKKITSDITMRLYDAGHILGSSSVYLDIGGKKLLYTGDINEIETRTLKSADTDID 171
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + R EK+ D I +TI +GG+V+IP FA+GR+QE++ +L
Sbjct: 172 EIDTLIIESTYGAPTDIKPSRKALEKQLIDEISATIEKGGKVIIPVFAVGRSQEIIAVLH 231
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L +Y ++ +N +IRN N NPF I +
Sbjct: 232 NYMRSK-LLKRVPIYVEGSLV-HTTGIYMSHSEWLNPKIRNNLENRINPFGDVTIVNKEN 289
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
+ + P +++++ G +Q G Q + S KN ++ G+ E TL + + +E
Sbjct: 290 SSEIYNKEPCIIISTSGMVQGGPILQYLKLLKS-PKNKIILTGFQAEETLGRQLEDGAEE 348
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
+T P+ +V + FSAH+DY ++K++ P + ++HGE ++
Sbjct: 349 ITPFRN-KIPVRGEVVKVEFSAHSDYNSLIRYMKKIPKPKKVFVMHGERYQ 398
>gi|240103777|ref|YP_002960086.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
gi|239911331|gb|ACS34222.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
Length = 651
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 145/468 (30%), Positives = 236/468 (50%), Gaps = 36/468 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A + A P+FD +D +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNIAAMRDPLKAFPHFDAPEFRYVLDEGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 251 AIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGMEPLYRP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + ++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 311 RDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
R L A P+ + ++ESTYG PR+ EKR +VIH TI +GG+VLI
Sbjct: 371 IPTRLLEPAVSRFPRV--ETLVMESTYGGSNDYQMPRDEAEKRLIEVIHHTIKRGGKVLI 428
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PA A+GRAQE++++L+EY ++PIY + + A++ Y ++ R+R Q
Sbjct: 429 PAMAVGRAQEIMMVLEEYARVG--GIDVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIF 485
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF FK ++ D D G P++++A+ G L G S + F D KN+
Sbjct: 486 HEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSI 545
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLK 419
+ Y EGTL + + +E+ L+ +G T +NM+VH I FS HAD + +++
Sbjct: 546 IFVSYQAEGTLGRQVQRGLREIPLVGEDGRTEVVQVNMEVHTIDGFSGHADRRELISYVA 605
Query: 420 EL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
L P +I VHGE H+ L + L + N P N ++ +
Sbjct: 606 RLRPRPERVITVHGEPHKCLDLASSLHKKF---NLSTRAPNNLDAIRL 650
>gi|290559801|gb|EFD93125.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 629
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 144/425 (33%), Positives = 218/425 (51%), Gaps = 22/425 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
I+ LGA VGRS V + ++L D G+ + S +P D E D S ++ ++ITH
Sbjct: 178 ISALGAFRHVGRSAVLVQTPISSVLLDAGVDVSNS-REPVPRVDAPEFDISKLNAVVITH 236
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP L K +KG V+ T T+ + LL DY+ ++ + +LFD DI
Sbjct: 237 SHLDHCGFLP-VLYKYGYKGPVYSTAPTRDVMTLLHLDYINLASKTNGKLLFDVDDIKNM 295
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHL 200
+ + FH+ ++ I+ + AGH+LG+AM ++I VLYTGD+ E + L
Sbjct: 296 LKHSITIPFHEVTDITPDIRITLHNAGHILGSAMIHLNIGNGFYNVLYTGDFKYENSKTL 355
Query: 201 RAAELPQFSPDICIIESTYGVQLH-QP-RNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
AE + I+ESTYG QP R+ EK F D+I T++ G+VL+P +GRA
Sbjct: 356 NRAETQFERVETLIMESTYGGDADTQPVRSETEKFFFDIISKTVANNGKVLVPVLGVGRA 415
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA--NSNPFK 316
QE++L+++E W + +P+ L A+Y Y MN RN+ ++NPF
Sbjct: 416 QEIMLLIEE-WQRYGLLPEVPVIVDGMLW-DVTAIYTVYPEFMNSETRNRIITHHNNPFL 473
Query: 317 ---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FKH GP++++A+ G L G S F C D+KNA V+ Y G
Sbjct: 474 SPIFKHTVSEEERQQVLSGGPAILLATSGMLNGGPSVSYFANLCEDEKNAIVLVSYQGVG 533
Query: 374 TLAKTIISEPKEVTL-MNGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
TL +TI + +EV + +NG +N V+ I FS H+D Q F+ ++ P +I
Sbjct: 534 TLGRTIQNGGREVDIELNGKLKHFTVNALVYSIEGFSGHSDRKQLERFVSDIRPKPRKVI 593
Query: 428 LVHGE 432
+ HGE
Sbjct: 594 IGHGE 598
>gi|150400487|ref|YP_001324253.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013190|gb|ABR55641.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 635
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 222/437 (50%), Gaps = 28/437 (6%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAI 76
RE + ++ LG EVGR+C Y+ IL DCGI+ A G A P+FD E I
Sbjct: 175 REDSWIRMSFLGGAREVGRTCNYLQTPESRILIDCGINVAMDGDRAFPHFDAPEFAVEEI 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D +++TH HLDH +P + + G ++ + T+ + LL DY+ +++ + + +
Sbjct: 235 DAVVVTHAHLDHCGFVPGLF-RYGYDGPIYCSKPTRDLMTLLQKDYIDIAEKEGKVVPYS 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYS 193
+DI + + I +D+ T +V IK + AGH+LG+A+ I + YTGD
Sbjct: 294 SKDIKKCVKHIIPIDYGVTTDVAPAIKLTMHNAGHILGSAIAHCHIGDGLYNIAYTGDIK 353
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVL 249
E R L A P+ + IIESTYG + + E+ F VI TI + G+++
Sbjct: 354 FEASRLLEPAVCNFPRL--ETLIIESTYGAYDDVLPDKGETEQNFLKVIAETIKRKGKII 411
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +RN+
Sbjct: 412 IPVFGIGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKNMRNRI 468
Query: 310 --ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF FK + N+ + D P +++ + G L G S + F D++NA
Sbjct: 469 FHEGDNPFLSEVFKKVRNTNNRRNIIDSDEPCIILTTSGMLSGGPSVEYFKSLAHDERNA 528
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMN----GLTAPLNMQVH-YISFSAHADYAQTSTFL 418
V GY EGT+ + I E+ +MN +N+ VH + FS H+D Q +L
Sbjct: 529 IVFVGYQSEGTMGRKIQRGWNEIPVMNRNGKSRAVKVNLSVHTFEGFSGHSDRRQLIKYL 588
Query: 419 KEL--MPPNIILVHGES 433
++L MP I+ VHGES
Sbjct: 589 RKLKPMPDRILTVHGES 605
>gi|304315326|ref|YP_003850473.1| metal-dependent RNase [Methanothermobacter marburgensis str.
Marburg]
gi|302588785|gb|ADL59160.1| predicted metal-dependent RNase [Methanothermobacter marburgensis
str. Marburg]
Length = 636
Score = 202 bits (513), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 242/469 (51%), Gaps = 32/469 (6%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD--EIDPSAI 76
E D +T +G EVGRSC+Y+ +L DCG++ A + PY + E ++
Sbjct: 176 ENDWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDRNSYPYLNVPEFTLDSL 235
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH+ LPY L + G V+ T T+ + LL D++ ++ E + F+
Sbjct: 236 DAVIITHAHLDHSGFLPY-LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFN 294
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYS 193
+ + +S+ LD+ + ++ I+ + AGH+LG+AM + I + ++YTGD+
Sbjct: 295 VKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFK 354
Query: 194 REEDRHLR--AAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVL 249
E+ R L A+ P+ + ++ESTYG + PR EK I+ST+ +GG++L
Sbjct: 355 YEQSRLLEPAASRFPRI--ETLVMESTYGGHEDVQPPRTRAEKELVKTIYSTLKRGGKIL 412
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FA+GRAQEL+++L+EY +P+Y + + A++ +++ +R+Q
Sbjct: 413 IPVFAVGRAQELMIVLEEYIRTGI-IDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQI 470
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF + +N +D+ ++ PS+++++ G L G S + F C D KN+
Sbjct: 471 FHMGHNPFISEIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPKNSL 530
Query: 365 VIPGYVVEGTLAKTIISEPKEVTL------MNGLTAPLNMQVHYISFSAHADYAQTSTFL 418
V GY EG+L + I KE+ L M +N++ FS H+D Q ++
Sbjct: 531 VFVGYQAEGSLGRRIQKGWKEIPLKDEEDKMRVYNVKMNIKT-IEGFSGHSDRRQLMEYV 589
Query: 419 KEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
K + P I+L HG++++ L + + TK TP N ++V +
Sbjct: 590 KRISPKPEKILLCHGDNYKTLDLASSIYRTYR-IETK--TPLNLETVRI 635
>gi|237842097|ref|XP_002370346.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
gi|211968010|gb|EEB03206.1| RNA-metabolising metallo-beta-lactamase domain-containing protein
[Toxoplasma gondii ME49]
Length = 1089
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 135 FDEQDINRSMDKIEVLDFHQT--------VEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
F+ D+ S+ + + L H+T ++ + AGHVLGAAMF + + V
Sbjct: 259 FETSDVVASVARAKALRLHETWREETGEETGEETLQLTPFYAGHVLGAAMFELKLGKASV 318
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
+YTGD++ DRHL +A LP PD+ I E TY + + E+ F V+H T+++GG
Sbjct: 319 VYTGDFNTIPDRHLGSAALPCLRPDVLISECTYASFVRPSKRTVERDFCAVVHDTLTKGG 378
Query: 247 RVLIPAFALGRAQELLLILDEYWSN-HPEFHNIPIYYASPLAKKCMAVYQTYI----LSM 301
+VLIP FA+GRAQEL ++L+ YW H F PIY+A + ++ A Y+ Y+
Sbjct: 379 KVLIPVFAVGRAQELCMLLENYWERMHLRF---PIYFAGGMTERANAYYRLYVHWSKADA 435
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
N + A F F HI P S S P V++A+PG L GL+ + W D
Sbjct: 436 NVDADPEDALRTAFSFPHILPFQS-SLLSAPTPLVLLATPGMLHGGLALKALKAWGGDPA 494
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL 421
++PGY V GT+ +I+ +++ L T + ++ Y+SFSAHAD +
Sbjct: 495 TLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADTTGIQQLIVNT 554
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P N+ILVHGE M +L + D N + TP Q++ +
Sbjct: 555 QPRNVILVHGEKEGMAKLAAVIRR---DFNIPVYTPATGQTISI 595
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
A+D +++HFHLDH +LP E ++G V MT TKA+ LLL D +V +
Sbjct: 128 AVDACVVSHFHLDHCGALPTLTEFLQYRGPVLMTFPTKALSPLLLLDCARVGR 180
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
L IT LGAG +VGRS VY+ + +LFDCG H P FD++ A+
Sbjct: 2 LHITVLGAGQDVGRSAVYVRLGRRCVLFDCGCHLGMKDARRFPLFDKLAALAV 54
>gi|221482308|gb|EEE20663.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1090
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 135 FDEQDINRSMDKIEVLDFHQT--------VEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
F+ D+ S+ + + L H+T ++ + AGHVLGAAMF + + V
Sbjct: 267 FETSDVVASVARAKALRLHETWREETGEETGEETLQLTPFYAGHVLGAAMFELKLGKASV 326
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
+YTGD++ DRHL +A LP PD+ I E TY + + E+ F V+H T+++GG
Sbjct: 327 VYTGDFNTIPDRHLGSAALPCLRPDVLISECTYASFVRPSKRTVERDFCAVVHDTLTKGG 386
Query: 247 RVLIPAFALGRAQELLLILDEYWSN-HPEFHNIPIYYASPLAKKCMAVYQTYI----LSM 301
+VLIP FA+GRAQEL ++L+ YW H F PIY+A + ++ A Y+ Y+
Sbjct: 387 KVLIPVFAVGRAQELCMLLENYWERMHLRF---PIYFAGGMTERANAYYRLYVHWSKADA 443
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
N + A F F HI P S S P V++A+PG L GL+ + W D
Sbjct: 444 NVDADPEDALRTAFSFPHILPFQS-SLLSAPTPLVLLATPGMLHGGLALKALKAWGGDPA 502
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL 421
++PGY V GT+ +I+ +++ L T + ++ Y+SFSAHAD +
Sbjct: 503 TLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADTTGIQQLIVNT 562
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P N+ILVHGE M +L + D N + TP Q++ +
Sbjct: 563 QPRNVILVHGEKEGMAKLAAVIRR---DFNIPVYTPATGQTISI 603
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 5/109 (4%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDV 78
L IT LGAG +VGRS VY+ + +LFDCG H P FD++ P A+D
Sbjct: 75 LHITVLGAGQDVGRSAVYVRLGRRCVLFDCGCHLGMKDARRFPLFDKLAPRGILTHAVDA 134
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
+++HFHLDH +LP E ++G V MT TKA+ LLL D +V +
Sbjct: 135 CVVSHFHLDHCGALPTLTEFLQYRGPVLMTFPTKALSPLLLLDCARVGR 183
>gi|221502797|gb|EEE28511.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii VEG]
Length = 1072
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 176/344 (51%), Gaps = 20/344 (5%)
Query: 135 FDEQDINRSMDKIEVLDFHQT--------VEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
F+ D+ S+ + + L H+T ++ + AGHVLGAAMF + + V
Sbjct: 259 FETSDVVASVARAKALRLHETWREETGEETGEETLQLTPFYAGHVLGAAMFELKLGKASV 318
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
+YTGD++ DRHL +A LP PD+ I E TY + + E+ F V+H T+++GG
Sbjct: 319 VYTGDFNTIPDRHLGSAALPCLRPDVLISECTYASFVRPSKRTVERDFCAVVHDTLTKGG 378
Query: 247 RVLIPAFALGRAQELLLILDEYWSN-HPEFHNIPIYYASPLAKKCMAVYQTYI----LSM 301
+VLIP FA+GRAQEL ++L+ YW H F PIY+A + ++ A Y+ Y+
Sbjct: 379 KVLIPVFAVGRAQELCMLLENYWERMHLRF---PIYFAGGMTERANAYYRLYVHWSKADA 435
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
N + A F F HI P S S P V++A+PG L GL+ + W D
Sbjct: 436 NVDADPEDALRTAFSFPHILPFQS-SLLSAPTPLVLLATPGMLHGGLALKALKAWGGDPA 494
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL 421
++PGY V GT+ +I+ +++ L T + ++ Y+SFSAHAD +
Sbjct: 495 TLVLLPGYCVRGTVGAMLIAGQRQIPLDGHATLNVKCRIRYMSFSAHADTTGIQQLIVNT 554
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P N+ILVHGE M +L + D N + TP Q++ +
Sbjct: 555 QPRNVILVHGEKEGMAKLAAVIRR---DFNIPVYTPATGQTISI 595
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
A+D +++HFHLDH +LP E ++G V MT TKA+ LLL D +V +
Sbjct: 128 AVDACVVSHFHLDHCGALPTLTEFLQYRGPVLMTFPTKALSPLLLLDCARVGR 180
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
L IT LGAG +VGRS VY+ + +LFDCG H P FD++ A+
Sbjct: 2 LHITVLGAGQDVGRSAVYVRLGRRCVLFDCGCHLGMKDARRFPLFDKLAALAV 54
>gi|20094663|ref|NP_614510.1| metal-dependent RNase [Methanopyrus kandleri AV19]
gi|19887824|gb|AAM02440.1| Predicted metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain [Methanopyrus kandleri AV19]
Length = 652
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 223/429 (51%), Gaps = 26/429 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
++ LG EVGRS +++ + +L DCG++ A +G A P+F+ E +D ++ITH
Sbjct: 196 VSALGGFQEVGRSSLFLHTEESRVLLDCGVNVAANGTDAYPHFNVPEFRMDDLDAIVITH 255
Query: 84 FHLDHAASLPYFLEKTTFKGRV--FMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
HLDH LPYF + RV + T T+ + LLLTDY+KV + ++ + E+D+
Sbjct: 256 AHLDHCGFLPYFYRHKVIESRVPVYCTPPTRDLMYLLLTDYIKVLEKRGQEPPYTEKDVK 315
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAA---MFMVDIAGVRVLYTGDYSREED 197
+ + + +D+ + ++ + Y AGH+LG+A +F+ D G +YTGD +
Sbjct: 316 KVIKRTITIDYREPTDITPDMSITFYNAGHILGSASVHVFLQD-KGHNFVYTGDINPTPS 374
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
R L A+ D ++E+TYG H R E RF ++ T+ +GG+VLIP+FA+GR
Sbjct: 375 RLLEGADNRFKRVDSMVVEATYGDSRHGSRRKEENRFRKIVRDTLKKGGKVLIPSFAVGR 434
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF 315
AQE++L+L++ E P+Y + + A++ Y +N R++++ + +PF
Sbjct: 435 AQEVMLVLEDMHRKD-ELEG-PVYLDG-MIYEATAIHTAYPEYLNRRLQHRILHEDDDPF 491
Query: 316 KFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+ P+ D D P+V++++ G L+ G + D KN + GY
Sbjct: 492 TSEVFEPVEGSDHRQAIMEDDEPAVILSTSGMLEGGPILEYLRELSDDPKNTLIFVGYQA 551
Query: 372 EGTLAKTIISEPKEVTL--MNGLTAPLN--MQVHYIS-FSAHADYAQTSTFLKELM--PP 424
EGTL + I KEV L G T L ++V +S FS H D + + +++ + PP
Sbjct: 552 EGTLGRQIQEGAKEVPLPTPTGKTETLRIELRVETVSGFSGHGDKIELTKYVRSIRPSPP 611
Query: 425 NIILV-HGE 432
+ + HGE
Sbjct: 612 SKVFTNHGE 620
>gi|256810348|ref|YP_003127717.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus fervens AG86]
gi|256793548|gb|ACV24217.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus fervens
AG86]
Length = 634
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 225/436 (51%), Gaps = 30/436 (6%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAID 77
GD I ++ LG EVGRSC+Y+ +L DCGI+ A+ A P+FD E +D
Sbjct: 176 GDYWIRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVAFED-KAFPHFDAPEFSIEDLD 234
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDH +P + + G V+ T T+ + LL DY++++K +++ +
Sbjct: 235 AVIVTHAHLDHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTS 293
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSR 194
+DI + +D+ T +++ IK + AGHVLG+A+ + I + YTGD
Sbjct: 294 KDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGDGLYNLAYTGDIKF 353
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E R L A + P+ + IIESTYG + R+ E+ V+ T +GG+VLI
Sbjct: 354 ETSRLLEPAVCQFPRL--ETLIIESTYGAYDDVLPERDEAERELLRVVSETTEKGGKVLI 411
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +R +
Sbjct: 412 PVFGVGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKEMRQKIF 468
Query: 310 -ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF FK + N D P +++A+ G L G S + D+KNA
Sbjct: 469 HEGDNPFLSEVFKRVGSTNERRKVIDSDEPCIILATSGMLTGGPSVEYLKHLAPDEKNAI 528
Query: 365 VIPGYVVEGTLAKTIISEPKE--VTLMNGLTA--PLNMQVHYIS-FSAHADYAQTSTFLK 419
+ GY EGTL + + KE +T NG T P+NM+V+ I FS H+D Q +++
Sbjct: 529 IFVGYQAEGTLGRKVQRGWKEIPITTRNGKTKSIPINMKVYTIEGFSGHSDRKQLIKYIR 588
Query: 420 ELMPP--NIILVHGES 433
+ P +I+VHGE
Sbjct: 589 RVKPSPEKVIMVHGEE 604
>gi|390960706|ref|YP_006424540.1| hypothetical protein CL1_0538 [Thermococcus sp. CL1]
gi|390519014|gb|AFL94746.1| hypothetical protein containing KH domain /beta-lactamase-domain
protein [Thermococcus sp. CL1]
Length = 648
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 236/468 (50%), Gaps = 36/468 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD +D +D
Sbjct: 188 ITGLGGFREVGRSALLVQTNESYVLVDFGVNIAAMKDPKKAFPHFDAPEFRYVLDAGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ K++ + L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDFIEIQKMNGVEPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + ++ ++ + AGH+LG+++ + I + TGD+
Sbjct: 308 RDIKEVIKHTITLDYGEVRDIAPDMRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKF 367
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
R A P+ + ++ESTYG PR EKR +VIH TI +GG+VLI
Sbjct: 368 IPTRLFEPAVSRFPRL--ETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTIRRGGKVLI 425
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PA A+GRAQE++++L+EY +PIY + + A++ Y ++ +R Q
Sbjct: 426 PAMAVGRAQEIMMVLEEYARVG--GIEVPIYLDG-MIWEATAIHTAYPEYLSRHLREQIF 482
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF FK ++ D D G P++++A+ G L G S + F D KN+
Sbjct: 483 HEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSI 542
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLK 419
V Y EGTL + + +E+ L+ +G T P+NM+VH I FS HAD + +++
Sbjct: 543 VFVSYQAEGTLGRQVQRGLREIPLVGEDGKTEVVPVNMEVHTIDGFSGHADRRELISYIA 602
Query: 420 EL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
L P +I VHGE+H+ L T + + +T+ P N ++ +
Sbjct: 603 RLRPRPERVITVHGEAHKCLDLSTSIHKKFG-ISTR--APNNLDAIRL 647
>gi|305662491|ref|YP_003858779.1| KH-domain/beta-lactamase-domain-containing protein [Ignisphaera
aggregans DSM 17230]
gi|304377060|gb|ADM26899.1| KH-domain/beta-lactamase-domain protein [Ignisphaera aggregans DSM
17230]
Length = 641
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 245/483 (50%), Gaps = 37/483 (7%)
Query: 13 RDAPVSREGDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD- 69
RD +++ G + +T LG EVGRS + + +L D G++P S A P D
Sbjct: 168 RDVLLAKNGSNYVRVTFLGGAQEVGRSAILVETAESRVLLDFGLNPGRSLSPNAFPRIDL 227
Query: 70 -EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
I+P ID +++TH HLDH +PY K F+G V+ T AT+ + LLL DY+++S+
Sbjct: 228 LNIEPDDIDAVIVTHAHLDHCGLVPYLF-KYGFRGAVYTTDATRDLMVLLLKDYLEISER 286
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--R 185
+ F +D+ + + L + ++ I+ Y AGH+LG+A+ + I
Sbjct: 287 EGTEPPFTLRDVEQMLLHTITLKYDVVTDIAPDIRLTLYNAGHILGSAIAHLHIGNGFHN 346
Query: 186 VLYTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
++YTGD+ R L A E P+ D I+ESTYG R+ E ++ T
Sbjct: 347 IVYTGDFKFGRTRLLDRANYEFPRV--DTIIMESTYGATEQPARDRAEDELIRIVKETYD 404
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY--ILS- 300
+GG+VLIP+ ++GRAQE++LIL + + + IP+Y + + A++ Y +LS
Sbjct: 405 RGGKVLIPSLSVGRAQEVMLILADAMKQN-KLPKIPVYIEG-MIHEVTAIHTAYPDLLSK 462
Query: 301 -MNERIRNQFANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDI 355
+ +R++ + NPF ++ L + +++ P++++A+ G L G + + F +
Sbjct: 463 ELGQRLK---SGENPFDYETFIRLEGREPRTEIVESSEPAIIIATSGMLTGGPAVEYFKL 519
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGL----TAPLNMQVHYI-SFSAHAD 410
S+ ++ V Y VEGTL + I +EV +N + MQV+ I FS H+D
Sbjct: 520 MASNPNHSLVFVSYQVEGTLGRRIRDGAREVAFVNERGKVEVIRIKMQVYSIEGFSGHSD 579
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKL---MTELADCNTKIITPKNCQSVEM 465
Q +L+ E P ILVHGE + + L ++ L D N ++TPK +S +
Sbjct: 580 RPQLLEYLRHIEPKPSTAILVHGEKNAVMNLANEISRSRKRLGDIN--VLTPKILESYTL 637
Query: 466 YFN 468
+N
Sbjct: 638 AYN 640
>gi|119719226|ref|YP_919721.1| beta-lactamase domain-containing protein [Thermofilum pendens Hrk
5]
gi|119524346|gb|ABL77718.1| beta-lactamase domain protein [Thermofilum pendens Hrk 5]
Length = 639
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 237/466 (50%), Gaps = 25/466 (5%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDV 78
D++ I LGA +EVGRS V + IL D G+ P +G LP FD E D ++D
Sbjct: 177 ADRVRIVSLGAFHEVGRSAVLVQTPEANILLDAGLKPTGNG-DELPLFDLPEFDLESLDA 235
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++ITH HLDH +LP K +KG V+MT T + KLL DY+KV++ ++ L+ +
Sbjct: 236 VVITHAHLDHVGALPVLF-KYGYKGPVYMTEPTLHLSKLLFEDYIKVAQREGKNELYSMR 294
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSRE 195
D+N + L + + ++ I+ Y AGH+LG+AM + I + ++YTGD
Sbjct: 295 DVNSLLLNTYTLSYGEVTDIAPEIRLTFYRAGHILGSAMVHLHIGEGLINIVYTGDMKYA 354
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
L A ++ IIESTYG + + + + ++ TI + G VLIP
Sbjct: 355 RTMLLDPAYNKFPRAEVLIIESTYGSKSDVLPSEDDAKLELAKIVLETIERKGVVLIPVL 414
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANS 312
A+GRAQE+LL L + +PI+ + + AV+ T+ ++ IR + +
Sbjct: 415 AVGRAQEVLLALLDLMKKGA-VPRVPIFIEG-MIDEVSAVHMTFPEYLSATIREMIYRDE 472
Query: 313 NPFKFKHISPLN--SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
NPF ++I + + +D ++ PS+++A+ G L G I D+ ++ V Y
Sbjct: 473 NPFTSENIHVIRGEAREDITEKKPSIILATSGMLTGGPVLDYLRILADDENSSLVFVSYQ 532
Query: 371 VEGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYIS-FSAHADYAQTSTFLKELMPP- 424
VEGTL + I+ ++++ + + L M+V+ + FS H+D Q F++ + P
Sbjct: 533 VEGTLGRKILQGLRKLSFTDPSGKVINKDLKMRVYRVEGFSGHSDRRQLEAFIRRMEPSP 592
Query: 425 -NIILVHGESHEMGRLKTKLMTEL----ADCNTKIITPKNCQSVEM 465
+IL HGE+ ++ + L +E N ++TPKN +S+ +
Sbjct: 593 RTVILNHGEAGKIEEFRRYLSSEWFKKKTGLNLDVLTPKNAESIRI 638
>gi|255513745|gb|EET90010.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 655
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 145/472 (30%), Positives = 241/472 (51%), Gaps = 37/472 (7%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-----------YSGMAALPYFD--E 70
L T LG EVGRSC+ + I+ DCGI P G A PY D
Sbjct: 190 LKATALGGFREVGRSCLLLETPNSKIIIDCGISPEPGIKGLDANANQEGNKAFPYIDSAN 249
Query: 71 IDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
I + ID +++TH H+DH +PY K ++G V+ T T+ + LLLTDY ++ + S
Sbjct: 250 ISINEIDAVILTHGHMDHMGFVPYLF-KYGYEGPVYCTPPTRDLAALLLTDYTRLVQKSG 308
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG--VRVL 187
L+ E+DI + + + D+ + + + +K + AGH+LG+A + + ++
Sbjct: 309 GTPLYGEKDIKKMLLHMITRDYGEVTNITDELKLTYHNAGHILGSATVHLHVGEGMYNIV 368
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQG 245
+TGD R L A + D IESTYG + Q R+ E+ ++I TI++
Sbjct: 369 HTGDMKYGFTRLLDPASVKYPRVDALFIESTYGGPRDISQNRHDTERELMELIKRTINRN 428
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNH-PEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
G+VLIP FA+GR+QEL L+L+ Y +N+ P ++P+Y + + A++ Y + E
Sbjct: 429 GKVLIPLFAVGRSQELQLVLENYMTNNGPYKLDVPVYLDG-MILEASAIHTAYPEYLKEN 487
Query: 305 IRNQFANS-NPFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
+RN+ N+ +PF+ F+ I S D D GP++++AS G L G S + F ++
Sbjct: 488 VRNRILNNRSPFESEIFEVIKGERS--DVFDKGPAIILASGGMLNGGASVEYFKGLLANP 545
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMN--GLTAPLNMQVHYIS---FSAHADYAQTS 415
NA V GY +L + I + KEV L N G P+ ++++ + FS H+D Q
Sbjct: 546 DNAMVFVGYNSANSLGRRIQNGLKEVALPNEDGKITPMEVKMNVATVEGFSGHSDRHQLI 605
Query: 416 TFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
F+++L P +I +HGE + L + + ++ +++ P N S+ +
Sbjct: 606 DFVEKLNVKPKSIFTMHGEEQKCEDL-ARTLGKIVHADSR--APMNLDSIRL 654
>gi|302872375|ref|YP_003841011.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
gi|302575234|gb|ADL43025.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
Length = 821
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/451 (31%), Positives = 220/451 (48%), Gaps = 27/451 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + GK IL D GI + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQVLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHA-TKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRS 143
LDH SLP L + F T+ TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 61 LDHIGSLP--LIAREYPHIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDL 118
Query: 144 MDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
+D+ F+ T E V GI+ + AGH+LGA+M + +LYTGD+S ++ +
Sbjct: 119 LDRTLTYGFNYTFEPVEGIRVTFFPAGHILGASMIFIQTQEGSILYTGDFSADKQLTVDK 178
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A +P+ PDI I ESTYG +LH R+ E+R + I+ ISQGG+VLIPAFA+GRAQE++
Sbjct: 179 ASVPKIRPDIVICESTYGDRLHTNRSFEEERLFNTIYEVISQGGKVLIPAFAIGRAQEVI 238
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
LIL Y NI + + ++ + VY+ ++ R +
Sbjct: 239 LILRNYMKKRKVSFNI---FIDGMVREVIKVYRNNPTYLSSRYYKRVLKGEEIFLA--DN 293
Query: 323 LNSIDD-------FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
+N + D S P V+++S G L G S + I GY E
Sbjct: 294 INVVSDKKQREEIISSSDPCVIISSSGMLTGGPSVFYAEKIVQSPNALIAITGYQDEEAP 353
Query: 376 AKTI-----ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
+ + +SE ++ +NG + +V SAH+D + FL L P +I H
Sbjct: 354 GRKLLELAELSESEKKIDLNGKEYEVKCRVEKYGLSAHSDRDKILGFLSTLRPRTVIFAH 413
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
G + ++ + EL D N I+ P+N +
Sbjct: 414 GSEEAISQISDMAVKEL-DAN--IVVPQNGE 441
>gi|18977777|ref|NP_579134.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
gi|18893520|gb|AAL81529.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
Length = 651
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 238/466 (51%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D GI+ A A P+FD + +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLKEGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D+V++ + + ++ L+
Sbjct: 251 AIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQQSNGQEPLYKP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ ++ + AGH+LG+A+ + I + TGD+
Sbjct: 311 KDIKEVIKHTITLDYGEVRDISPDVRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDFKF 370
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH TI +GG+VLIPA
Sbjct: 371 IPTRLLEPASYRFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTIRRGGKVLIPA 430
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--A 310
A+GRAQE++++L+EY ++PIY + + A++ Y +++ +R Q
Sbjct: 431 MAVGRAQEIMMVLEEYARVG--GIDVPIYLDG-MIWEATAIHTAYPEYLSKTLREQIFKE 487
Query: 311 NSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
+ NPF + P+ + + D+ P++++AS G L G S + F SDK+N+ +
Sbjct: 488 DYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLASDKRNSIIF 547
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ +G T +NM+VH I FS HAD + ++ ++
Sbjct: 548 VSYQAEGTLGRQVQSGVREIPMIGESGRTEVIKVNMEVHTIDGFSGHADRKELMNYVAKV 607
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 608 RPRPERVITVHGEPQKCLDLATSIHKKFG-LSTR--APNNLDTIRL 650
>gi|397651897|ref|YP_006492478.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
gi|393189488|gb|AFN04186.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
Length = 648
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 238/466 (51%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D GI+ A A P+FD + +D
Sbjct: 188 ITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLKEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D+V++ + + ++ L+
Sbjct: 248 AIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQQSNGQEPLYKP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ ++ + AGH+LG+A+ + I + TGD+
Sbjct: 308 KDIKEVIKHTITLDYGEVRDISPDVRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDFKF 367
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH TI +GG+VLIPA
Sbjct: 368 IPTRLLEPASYRFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTIRRGGKVLIPA 427
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--A 310
A+GRAQE++++L+EY ++PIY + + A++ Y +++ +R Q
Sbjct: 428 MAVGRAQEIMMVLEEYARVG--GIDVPIYLDG-MIWEATAIHTAYPEYLSKTLREQIFKE 484
Query: 311 NSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
+ NPF + P+ + + D+ P++++AS G L G S + F SDK+N+ +
Sbjct: 485 DYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLASDKRNSIIF 544
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ +G T +NM+VH I FS HAD + ++ ++
Sbjct: 545 VSYQAEGTLGRQVQSGVREIPMIGESGRTEVIKVNMEVHTIDGFSGHADRKELMNYVAKV 604
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 605 RPRPERVITVHGEPQKCLDLATSIHKKFG-LSTR--APNNLDTIRL 647
>gi|297619164|ref|YP_003707269.1| KH-domain/beta-lactamase-domain-containing protein [Methanococcus
voltae A3]
gi|297378141|gb|ADI36296.1| KH-domain/beta-lactamase-domain protein [Methanococcus voltae A3]
Length = 635
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 141/429 (32%), Positives = 217/429 (50%), Gaps = 32/429 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG EVGR+C+Y I+ DCGI+ A P+FD E ID +++TH HL
Sbjct: 185 LGGSREVGRTCLYHQTPESRIMIDCGINVGMDDEKAFPHFDAPEFSIEEIDAVVVTHAHL 244
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH +P + + G V+ T T+ + LL DY+ +++ + + + +D+ ++
Sbjct: 245 DHCGFIPGLF-RYGYDGPVYCTKPTRDLMTLLQKDYIDIAEKEGKPVPYTSRDVKNAIKH 303
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRAA 203
LD+ T ++ +K + AGH+LG+A+ I V YTGD E R L A
Sbjct: 304 TIPLDYGVTTDIAPAVKLTLHNAGHILGSAIAHCHIGDGLYNVAYTGDIKFEASRLLEPA 363
Query: 204 --ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
+ P+ + I+ESTYG + R+ EK VI TI++GG+V++P F +GRAQ
Sbjct: 364 VCQFPRL--ETLIMESTYGGYDDVLPERDETEKELLKVISETIAKGGKVILPVFGIGRAQ 421
Query: 260 ELLLILDEYWS----NHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
EL+L+L+E ++ N P F + I+ A+ + Y Y LS N R R NPF
Sbjct: 422 ELMLVLEEGYNQGIFNAPVFLDGMIWEATAI----HTAYPEY-LSKNMRNRIFHEGDNPF 476
Query: 316 KFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+ + D +V P +++A+ G L G S + F D+KNA V GY
Sbjct: 477 LSEVFKKVKDTKDRRNVIGRDEPCIILATSGMLTGGPSVEYFKTLADDEKNAIVFVGYQS 536
Query: 372 EGTLAKTIISEPKEVTLM--NGLTAPLNMQ--VHYI-SFSAHADYAQTSTFLKEL--MPP 424
EGTL + I KE+ LM NG T + ++ VH + FS H D Q +L++L +P
Sbjct: 537 EGTLGRKIQKGWKEIPLMGKNGKTRAIKVKLSVHTLEGFSGHCDRKQLIKYLRKLKPIPD 596
Query: 425 NIILVHGES 433
I+ +HGE+
Sbjct: 597 KILTIHGEA 605
>gi|150399442|ref|YP_001323209.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150012145|gb|ABR54597.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 421
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 132/411 (32%), Positives = 224/411 (54%), Gaps = 30/411 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV ++ K IL DCG+ P+ + +LP +I S D +L++H HLDH
Sbjct: 8 GGCHQIGKSCVEVNTKKSKILLDCGMDPSDN---SLP---DIKDSEYDAVLVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++PYF FK +V+ T + + D V +SK+ + E+DI ++MD I+
Sbjct: 62 GAIPYF----NFK-KVYCNPPTADLMYNVWKDTVNLSKI------YKEEDIKKTMDVIKT 110
Query: 150 LDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+ + + +V IK + AGH+LG++ +D+ G ++LYTGD + E R L +A+
Sbjct: 111 VKYREEKQVTSDIKMKMHDAGHILGSSSIYLDVDGKKLLYTGDINEIETRTLCSADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + + R + EK+ D I TI GG+V+IP FA+GR+QE++++++
Sbjct: 171 EIDTIIIESTYGSPLDIKPARKVLEKQLIDEISETIENGGKVIIPVFAVGRSQEIIVVIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + +PIY L + +Y Y +N +I+N N NPF + + +
Sbjct: 231 NYMKSG-ALKEVPIYVNGSLT-HTIGMYMGYSEWLNPKIKNTIENRINPFG----NLIKN 284
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D+ + P +++++ G +Q G Q + + KN ++ GY EGT+ +++ KE
Sbjct: 285 SDEVFNKEPCIIISTSGMVQGGPILQYLSL-LKNPKNKLILTGYQAEGTIGRSLEEGVKE 343
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
+T P+N V + FSAHADY +LK++ P I++HGE ++
Sbjct: 344 ITPFK-RAIPVNGTVIKVEFSAHADYNSLIRYLKKIPEPKKAIVMHGERYQ 393
>gi|312135668|ref|YP_004003006.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
gi|311775719|gb|ADQ05206.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
Length = 821
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 139/451 (30%), Positives = 220/451 (48%), Gaps = 27/451 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + GK IL D GI + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHA-TKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRS 143
LDH SLP L + F T+ TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 61 LDHIGSLP--LIAREYPHIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDL 118
Query: 144 MDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
+D+ F+ T E V GI+ + AGH+LGA+M + +LYTGD+S ++ +
Sbjct: 119 LDRTLTYGFNYTFEPVEGIRVTFFPAGHILGASMIFIQTQEGSILYTGDFSADKQLTVDR 178
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A +P+ PDI I ESTYG +LH R+ E+R + I ISQGG+VLIPAFA+GRAQE++
Sbjct: 179 ASVPKIRPDIVICESTYGDRLHTNRSFEEERLFNTIFEVISQGGKVLIPAFAIGRAQEVI 238
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
LIL Y N+ + + ++ + VY+ ++ R +
Sbjct: 239 LILRNYMKKRKVSFNV---FIDGMVREVIRVYRNNPTYLSSRYYKRVLKGEEIFLA--DN 293
Query: 323 LNSIDD-------FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
+N + D S P V+++S G L G S + + I GY E
Sbjct: 294 INVVSDKKQREEIISSSDPCVIISSSGMLTGGPSLFYAEKIVQSQNALVAITGYQDEEAP 353
Query: 376 AKTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
+ ++ E ++ +NG + +V SAH+D + FL L P +I VH
Sbjct: 354 GRKLLELAELPESEKKINLNGKEYEVKCRVEKYGLSAHSDRDKILGFLATLRPRTVIFVH 413
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
G + ++ + EL D N I+ P+N +
Sbjct: 414 GSEDAISQISDMAVKEL-DAN--IVVPQNGE 441
>gi|70606450|ref|YP_255320.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449066664|ref|YP_007433746.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449068938|ref|YP_007436019.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
gi|68567098|gb|AAY80027.1| hypothetical metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035172|gb|AGE70598.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449037446|gb|AGE72871.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
Length = 631
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 135/456 (29%), Positives = 228/456 (50%), Gaps = 23/456 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVLLIT 82
IT LG NEVGRS V + IL D G++P+ S G P D ++ ID ++IT
Sbjct: 178 ITGLGGFNEVGRSAVLVETPESKILLDVGLNPSVSYGEKLFPRIDIDQVKLEDIDAVVIT 237
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +P L K ++G V+MT T+ I L D + V++ + + +++ R
Sbjct: 238 HAHLDHCGMVP-LLFKYGYEGPVYMTPPTRDIMALAQLDALDVAEKEGRPIPYTAKEVRR 296
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDRH 199
+ LD+ + ++ +K Y AGH+LG+AM + I G+ V+YTGD+ +
Sbjct: 297 ELLHTITLDYGEVTDIAPDVKLTFYNAGHILGSAMAHLHIGEGLHNVVYTGDFKYARTKL 356
Query: 200 LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
L A D I+E+TYG + R E + D+I+ TIS+GG+VLIP ++GR Q
Sbjct: 357 LDKANDEFIRVDTMIMETTYGAHDQENREESEAKLIDIINKTISKGGKVLIPVLSVGRGQ 416
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSNPFK- 316
E++L++++ N + +P+Y + + A++ Y ++ +R + + NPF
Sbjct: 417 EIMLVINDAMKNK-KIPEVPVYITG-MVDEITAIHTAYPEWLSRELREAILYRDENPFMS 474
Query: 317 --FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
FK I +D + PS+++A+ G L G + + F D +N+ V Y EGT
Sbjct: 475 EFFKRIEGYK--EDIAQGEPSIIIATSGMLNGGPAVEFFKNMAHDTRNSIVFVSYQAEGT 532
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNII 427
L + + K++ +++ +NM++ + FS H+D Q FL+ L P N++
Sbjct: 533 LGRKVRDGAKDIQILDRDGRVENIKVNMEIGVVEGFSGHSDRRQLLAFLRNLNVKPKNLV 592
Query: 428 LVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
L HGE + K + + + PK +S+
Sbjct: 593 LNHGEPSAISSFKRLVESGKIKGIDNVYAPKILESI 628
>gi|330835859|ref|YP_004410587.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329567998|gb|AEB96103.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 638
Score = 198 bits (503), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 230/437 (52%), Gaps = 31/437 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVLLIT 82
+T LGA EVGRS V + IL D G++P+ + G P D ++ +D +++T
Sbjct: 181 VTALGAFQEVGRSAVLVETPESRILMDVGVNPSVNFGERMFPKLDIDQLRLEDLDAVVLT 240
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH+ +P FL K ++G V+ T T+ I L+ D + V+ + + +++ +
Sbjct: 241 HAHLDHSGMIP-FLFKYGYEGPVYTTQPTRDIMALMQLDMLDVADKEGRPLPYSAKEVRK 299
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDRH 199
+ LD+ + ++ I+ Y AGH++G+AM + I GV ++YTGD+ R
Sbjct: 300 ELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLHIGDGVHNLVYTGDFKYARTRL 359
Query: 200 LRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
L A E P+ D I+E+TYGVQ R+ EK+ + I++TI++GG+VLIP A+GR
Sbjct: 360 LDRAVSEFPRV--DTLIMETTYGVQEQTNRDQSEKKLIETINNTINRGGKVLIPVLAVGR 417
Query: 258 AQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSN 313
QE++L++++ PE +P+ Y + L + A++ Y + + +R+ F + N
Sbjct: 418 GQEIMLVINDAMKKKMIPE---VPV-YVTGLFDEVTAIHTAYPEWLGKEVRDSILFKDEN 473
Query: 314 PFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF FK I +D + PS+++A+ G L G + + F D +N+ V Y
Sbjct: 474 PFTSDLFKRIEGYR--EDVAHGEPSIILATSGMLNGGPAVEFFKELAPDSRNSLVFVSYQ 531
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-----FSAHADYAQTSTFLKELMPP- 424
EGTL + + +E+ ++ N++V+ + FS H+D Q FL ++ P
Sbjct: 532 AEGTLGRKVRDGAREIQIIGRDGRVDNIKVNLETTPIDGFSGHSDKWQLLNFLGDITPKP 591
Query: 425 -NIILVHGESHEMGRLK 440
N+IL HGE++ + K
Sbjct: 592 RNVILNHGEANAIREFK 608
>gi|300856380|ref|YP_003781364.1| metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
gi|300436495|gb|ADK16262.1| putative metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
Length = 825
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 142/495 (28%), Positives = 235/495 (47%), Gaps = 55/495 (11%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHF 84
I+ LG EVG SC+ ++ K IL DCGI + S LP F I D +DV++++H
Sbjct: 3 ISFLGGAREVGGSCILLNIYNKNILLDCGIRQS-SSKDTLPDFKSIQDQGGVDVIIVSHA 61
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRS 143
H+DH SLP + K R++ T TK + K+LL D +K+ K ++ L+ E D+
Sbjct: 62 HMDHIGSLP-IISKEYPGARIYTTRMTKDLMKVLLYDSLKIMKNREGEIPLYAEGDVISM 120
Query: 144 MDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
++++ +++ + IK YTAGH+ GAA + + Y+GD+S + +
Sbjct: 121 LNRVFPINYMVEFSIFENIKLTFYTAGHIAGAACIYITTPEGSLFYSGDFSIFSQKTVEG 180
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
++P+ PD I ESTYG +LH R + E++ D I+ I + G++LIPAFALGRAQE+L
Sbjct: 181 LKVPKLRPDAAIFESTYGDRLHSNREVEEEKLIDTINDCIEKKGKMLIPAFALGRAQEVL 240
Query: 263 LILDEYWSN-----------------HPEFHNIPIYYASPLAKKCMA----VYQTYILSM 301
LI+ + + + + P+Y + L KK + Y I+++
Sbjct: 241 LIIKKAVNKNILKDTKVYVDGMIKDINRTYKLNPLYLKNSLGKKILRGIEPFYDDNIIAV 300
Query: 302 -NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
N ++R + D P V+++S G L G S+ + +
Sbjct: 301 DNNKLREEV-------------------LKDDEPCVIVSSSGMLTGGYSQYYAEKIAPME 341
Query: 361 KNACVIPGYVVE---GTLAKTIISEPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTST 416
VI GY E G ++ E K+ L +N T P+N +V + SAH+D + +
Sbjct: 342 NGYIVITGYQDEESPGRKLLNLLDEEKDKKLYINEKTVPVNCKVEKVGLSAHSDKYEIKS 401
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNS--EKMAK 474
+ L P NI LVHG + L +L D ++ P+ + E+ + ++ K
Sbjct: 402 LIDFLTPKNIFLVHGNEEVVENLSKELS---KDVRGRVYAPRCSEVYEINIKNPRKQWKK 458
Query: 475 TIGRLAEKTPEVGET 489
I ++ E+ E
Sbjct: 459 NIDKVMNSCEEMDEN 473
>gi|14591202|ref|NP_143278.1| mRNA 3'-end processing factor [Pyrococcus horikoshii OT3]
gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
gi|3257827|dbj|BAA30510.1| 651aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 651
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 233/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 251 AIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH+TI +GG+VLIPA
Sbjct: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGGKVLIPA 430
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L+EY +PIY + + A++ Y ++ R+R Q
Sbjct: 431 MAVGRAQEVMMVLEEYARIG--GIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D KN+ +
Sbjct: 488 GYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIF 547
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ G T +NM+VH I FS HAD + ++ ++
Sbjct: 548 VSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKV 607
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P II VHGE + L T + + +T+ P N ++ +
Sbjct: 608 RPRPERIITVHGEPQKCLDLATSIHRKFG-ISTR--APNNLDTIRL 650
>gi|222529916|ref|YP_002573798.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456763|gb|ACM61025.1| beta-lactamase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 821
Score = 197 bits (502), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 134/450 (29%), Positives = 214/450 (47%), Gaps = 25/450 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + GK IL D GI + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSM 144
LDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++ +
Sbjct: 61 LDHIGSLP-LIAREYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDLL 119
Query: 145 DKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+ F+ T E + GIK + AGH+LGA+M + +LYTGD+S + + A
Sbjct: 120 DRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIQTQEGSILYTGDFSADRQLTVDKA 179
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+P+ PD+ I ESTYG +LH RN E+R + + ISQGG+VLIPAFA+GRAQE++L
Sbjct: 180 SVPKIRPDVVICESTYGDRLHTNRNFEEERLFNTVAEVISQGGKVLIPAFAIGRAQEIIL 239
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPL 323
IL Y N+ + + ++ + VY+ ++ R + F +
Sbjct: 240 ILRNYMKKRKVSFNV---FIDGMVREVIRVYRNNPTYLSSRYYKRVLKGEEIFFA--DNI 294
Query: 324 NSIDD-------FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
N + D S P V+++S G L G S + + I GY E
Sbjct: 295 NVVSDKKQREEIISSSDPCVIISSSGMLTGGPSVFYAEKIVQSQNALIAITGYQDEEAPG 354
Query: 377 KTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+ ++ E + +NG + +V SAH+D + FL L P +I HG
Sbjct: 355 RKLLELAELPENERKIELNGKEYEVKCRVEKYGLSAHSDRDRILGFLATLRPRTVIFAHG 414
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
+ ++ + EL II P+N +
Sbjct: 415 SEDAILQISDMAVKEL---EANIIVPQNGE 441
>gi|224104288|ref|XP_002333963.1| predicted protein [Populus trichocarpa]
gi|222839279|gb|EEE77616.1| predicted protein [Populus trichocarpa]
Length = 277
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/104 (88%), Positives = 99/104 (95%)
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAE 481
MPPNIILVHGE++EMGRLK KL+TE AD NTKIITPKNCQSVEMYFNSEKMAKTIG+LAE
Sbjct: 1 MPPNIILVHGEANEMGRLKQKLITEFADGNTKIITPKNCQSVEMYFNSEKMAKTIGKLAE 60
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+TP+VGETVSGILVKKGFTYQIMAP DLH+FSQLST NITQRIT
Sbjct: 61 RTPDVGETVSGILVKKGFTYQIMAPGDLHVFSQLSTGNITQRIT 104
>gi|15679214|ref|NP_276331.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
gi|333944120|pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|333944121|pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|2622312|gb|AAB85692.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 636
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 240/469 (51%), Gaps = 32/469 (6%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD--EIDPSAI 76
+ D +T +G EVGRSC+Y+ +L DCG++ A + PY + E ++
Sbjct: 176 DNDWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSL 235
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH+ LPY L + G V+ T T+ + LL D++ ++ E + F+
Sbjct: 236 DAVIITHAHLDHSGFLPY-LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFN 294
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYS 193
+ + +S+ LD+ + ++ I+ + AGH+LG+AM + I + ++YTGD+
Sbjct: 295 VKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFK 354
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVL 249
E+ R L AA P+ + ++ESTYG + RN EK I+ST+ +GG++L
Sbjct: 355 YEQSRLLEAAANRFPRI--ETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKIL 412
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FA+GRAQEL+++L+EY +P+Y + + A++ +++ +R+Q
Sbjct: 413 IPVFAVGRAQELMIVLEEYIRTGI-IDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQI 470
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF +N +D+ ++ PS+++++ G L G S + F C D N+
Sbjct: 471 FHMGHNPFISDIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSL 530
Query: 365 VIPGYVVEGTLAKTIISEPKEVTL------MNGLTAPLNMQVHYISFSAHADYAQTSTFL 418
V GY EG+L + I KE+ L M +N++ FS H+D Q ++
Sbjct: 531 VFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKT-IEGFSGHSDRRQLMEYV 589
Query: 419 KEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
K + P I+L HG++++ L + + TK TP N ++V +
Sbjct: 590 KRISPKPEKILLCHGDNYKTLDLASSIYRTYR-IETK--TPLNLETVRI 635
>gi|312621851|ref|YP_004023464.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202318|gb|ADQ45645.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 821
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/451 (30%), Positives = 216/451 (47%), Gaps = 27/451 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + GK IL D GI + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHA-TKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRS 143
LDH SLP L + F T+ TK + K+LL D +++ +++ +++ ++ E+++
Sbjct: 61 LDHIGSLP--LIAREYPNIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDL 118
Query: 144 MDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
+D+ F+ T E + GIK + AGH+LGA+M + +LYTGD+S + +
Sbjct: 119 LDRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIQTQEGSILYTGDFSADRQLTVDK 178
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A +P+ PD+ I ESTYG +LH RN E+R + + ISQGG+VLIPAFA+GRAQE++
Sbjct: 179 ASVPKIRPDVVICESTYGDRLHTNRNFEEERLFNTVAEVISQGGKVLIPAFAIGRAQEII 238
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
LIL + N+ + + ++ + VY+ ++ R +
Sbjct: 239 LILRNFMKKRKVSFNV---FIDGMVREVIRVYRNNPTYLSSRYYKRVLKGEEIFLA--DN 293
Query: 323 LNSIDD-------FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
+N I D S P V+++S G L G S + ++ I GY E
Sbjct: 294 INVISDKKQREEIISSSDPCVIISSSGMLTGGPSVFYAEKIVQNQNALIAITGYQDEEAP 353
Query: 376 AKTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
+ ++ E + +NG + +V SAH+D + FL L P +I H
Sbjct: 354 GRKLLELAELPENERKIDLNGKEYEVKCRVEKYGLSAHSDRDRILGFLVTLRPRTVIFAH 413
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
G + ++ + EL II P+N +
Sbjct: 414 GSEDAISQISDMAVKELE---ANIIVPQNGE 441
>gi|170291024|ref|YP_001737840.1| beta-lactamase domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175104|gb|ACB08157.1| beta-lactamase domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 624
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/431 (33%), Positives = 227/431 (52%), Gaps = 26/431 (6%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
L T LGA EVGRS V ++ +L DCGI + S +A P D ID +D ++ITH
Sbjct: 175 LYATFLGAAREVGRSSVLITTDESNVLLDCGI--SLSSRSAFPRLDLIDIDELDAVIITH 232
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ +LP L K ++G V++T T+ + LLL DY+ +S+ F +D+
Sbjct: 233 AHLDHSGALP-LLFKYGYRGPVYLTRPTRDLMMLLLYDYINLSQRVGSIPFFSWRDVVNM 291
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDRHL 200
M+ LD+ +TV+++ IK Y AGH+LG+A+ ++I R VLYTGD+ + + L
Sbjct: 292 MNHTITLDYTETVDISPDIKLTFYNAGHILGSALAHLNIESARHNVLYTGDFRFRDTKLL 351
Query: 201 RAA--ELPQFSPDICIIESTYGVQLHQPRNI--REKRFTDVIHSTISQGGRVLIPAFALG 256
A + P+ + I+E TYG + ++ E+ VI T +GG+VLIPA A+G
Sbjct: 352 DKAVRKFPRV--ETLIMECTYGGESDVLPSLPEAEEALFSVIKGTAERGGKVLIPALAVG 409
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNP 314
RAQE++L L + + +IP+Y + A++ Y ++ +R + +P
Sbjct: 410 RAQEIMLSLVDGFERG-LLPDIPVYLDG-MIYDSTAIHSAYPDYLSNYVRESVFKRDRDP 467
Query: 315 FKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
F H + ++S D+ DV GP+V++A G L G S + ++N+ V+ Y
Sbjct: 468 FTEPHFNFVSS-DERPDVTKGGPAVIIAPSGMLTGGPSVDYLKLLAPGEENSIVLVSYQA 526
Query: 372 EGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPPN 425
EGTL + + +E+ L + +T + V I FSAHAD Q ++L E P
Sbjct: 527 EGTLGRRLRDGARELRLQDEEGYITIKVKADVRVIEGFSAHADKVQLLSYLSTMEPRPHR 586
Query: 426 IILVHGESHEM 436
+ LVHGE +M
Sbjct: 587 VFLVHGEEEKM 597
>gi|341581963|ref|YP_004762455.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
gi|340809621|gb|AEK72778.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
Length = 651
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 144/474 (30%), Positives = 238/474 (50%), Gaps = 36/474 (7%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------I 71
+ D + IT LG EVGRS + + +L D G++ A A P+F+ +
Sbjct: 185 KSDWIRITGLGGFREVGRSALLVQTNESYVLVDFGVNIAALRDPKKAFPHFEAPEFRYVL 244
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
D +D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ K++
Sbjct: 245 DAGLLDAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDFIEIQKMNGV 304
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLY 188
+ L+ +DI + LD+ + ++ ++ + AGH+LG+++ + I +
Sbjct: 305 EPLYRPRDIKEVIKHTITLDYGEVRDIAPDMRLTLHNAGHILGSSIVHLHIGNGLHNIAI 364
Query: 189 TGDYSREEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQ 244
TGD+ R A P+ + ++ESTYG PR EKR +VIH TI +
Sbjct: 365 TGDFKFIPTRLFEPAVSRFPRL--ETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTIRR 422
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+VLIPA A+GRAQE++++L+EY +PIY + + A++ Y ++
Sbjct: 423 GGKVLIPAMAVGRAQEIMMVLEEYARIG--GLEVPIYLDG-MIWEATAIHTAYPEYLSRH 479
Query: 305 IRNQFANS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCS 358
+R Q + NPF FK ++ D D G P++++A+ G L G S + F S
Sbjct: 480 LREQIFHEGYNPFLNPIFKPVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAS 539
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQ 413
D KN+ V Y EGTL + + +E+ L+ G T +NM+VH I FS HAD +
Sbjct: 540 DPKNSMVFVSYQAEGTLGRQVQRGLREIPLVGEGGKTEVVNVNMEVHTIDGFSGHADRRE 599
Query: 414 TSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++ L P +I VHGE+H+ L T + + +T+ P N ++ +
Sbjct: 600 LISYIARLRPRPERVITVHGEAHKCLDLSTSIHKKFG-LSTR--APNNLDAIRL 650
>gi|307595786|ref|YP_003902103.1| KH-domain/beta-lactamase-domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550987|gb|ADN51052.1| KH-domain/beta-lactamase-domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 643
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 137/455 (30%), Positives = 230/455 (50%), Gaps = 28/455 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV ++ ++ +T LGA EVGRS + + K +IL DCG+ P+ SG A P DE+D
Sbjct: 178 PVYKDA-RITVTGLGAQMEVGRSAILVRTKESSILLDCGVKPSSSGDEA-PLLDEVDLDT 235
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH H+DH +PY K +KG V+MT TK + ++LLTDY++ ++ +
Sbjct: 236 LDAVVITHAHMDHIGYVPYLF-KYGYKGPVYMTEPTKYLMEVLLTDYIEQAESEGRVPPY 294
Query: 136 DEQDINRSMDKIEVLDF--HQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGD 191
QD+ +++ L++ H T K + GH +G+A+ + I ++YTGD
Sbjct: 295 SRQDLAQALYHTITLNYADHPTDISPDTKLMLFDGGHEVGSAVVHLHIGNGLYNIIYTGD 354
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVL 249
R L A ++ I+ESTYG + + PR E++ D++ T+ G+VL
Sbjct: 355 MKYGPTRLLNPAHNKFKRAELLIMESTYGGKEDVQPPRQESEQKLIDLVKHTVEHEGKVL 414
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ- 308
IP F+ GRAQE+LL+L+E +N + IPI Y + + + V+ + +N +R
Sbjct: 415 IPVFSTGRAQEILLVLNEAINNK-QLPKIPI-YVDGMVLETLNVHLMFPDYLNRALREMI 472
Query: 309 FANSNPFKFKHISPLNSIDDFSDVG----------PSVVMASPGGLQSGLSRQLFDIWCS 358
+ NPF +++ P+ D P+V++A G L G F
Sbjct: 473 YDGVNPFLSEYVKPIERARDPEKRKEQVMEILQGPPAVILAPHGMLNGGPIMDYFVHAAE 532
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLM---NGLTAPLNMQVHYI-SFSAHADYAQT 414
D++N + Y E T+ + I +++T+ + +T + M+V I FS H+D Q
Sbjct: 533 DERNMLIFVSYQAENTIGRRIQQGERKLTVRYYSDRVTLDIKMKVESIPGFSGHSDRRQL 592
Query: 415 STFLKELMPP--NIILVHGESHEMGRLKTKLMTEL 447
+++ + P I+LVHGE ++ L L +L
Sbjct: 593 INYVRNMEPKPHKIMLVHGEPSKIMNLALTLELQL 627
>gi|332159620|ref|YP_004424899.1| mRNA 3'-end processing factor [Pyrococcus sp. NA2]
gi|331035083|gb|AEC52895.1| mRNA 3'-end processing factor, putative [Pyrococcus sp. NA2]
Length = 651
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 140/466 (30%), Positives = 234/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D GI+ A A P+FD + +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLREGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 251 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH TI +GG+VLIPA
Sbjct: 371 IPTRLLEPANARFPRLETLVMESTYGGSNDIQMPREEAEKRLIEVIHKTIKRGGKVLIPA 430
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L+EY ++PIY + + A++ Y ++ R+R Q
Sbjct: 431 MAVGRAQEVMMVLEEYARIG--GIDVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D KN+ +
Sbjct: 488 GYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIF 547
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ G T +NM+V+ I FS HAD + ++ ++
Sbjct: 548 VSYQAEGTLGRQVQSGAREIPMIGEEGRTEVIKVNMEVYTIDGFSGHADRRELMNYVAKV 607
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 608 KPRPERVITVHGEPQKCLDLATSIHKKFG-ISTR--APNNLDTIRL 650
>gi|46200035|ref|YP_005702.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
gi|46197663|gb|AAS82075.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
Length = 431
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/416 (30%), Positives = 202/416 (48%), Gaps = 23/416 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK------FK 318
Y H PIY SP+A + +A+Y + +E ++ F NPF+ +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLALYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 319 HISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
H +++ GP VV+A G L G SD +NA V GY G L
Sbjct: 293 HTEASKALNRAP--GPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPRGGLGAE 350
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
II+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 351 IIARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|409095356|ref|ZP_11215380.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus zilligii AN1]
Length = 648
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 225/438 (51%), Gaps = 33/438 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSAID 77
+T LG EVGRS + + +L D G++ A A P+FD +D +D
Sbjct: 188 VTGLGGFREVGRSALLVQTDESYVLVDFGVNIASLKDPTKAYPHFDAPEFRYVLDEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + ++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 308 RDIKDVIKHTITLDYGEVRDIAPDIRLTFHNAGHILGSAIVHLHIGNGLHNIAVTGDFKF 367
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLI 250
R A + P+ + I+ESTYG PR EKR +VIH TI +GG+VLI
Sbjct: 368 IPTRLFEPATSKFPRL--ETLIMESTYGAGNDYQMPREEAEKRLMEVIHQTIKRGGKVLI 425
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PA A+GRAQE++++L+EY +PIY + + A++ Y +++ +R Q
Sbjct: 426 PAMAVGRAQEIMMVLEEYARVGS--LEVPIYLDG-MIWEATAIHTAYPEYLSKNLREQIF 482
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF FK ++ D D G P++++A+ G L G S + F D KN+
Sbjct: 483 HEGYNPFLNPIFKSVANGRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSI 542
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFLK 419
++ Y EGTL + + KE+ L+ +G T + NM+VH I FS HAD + +++
Sbjct: 543 ILVSYQSEGTLGRQVQRGLKEIPLVGEDGRTEVINVNMEVHTIEGFSGHADRGELMSYVA 602
Query: 420 EL--MPPNIILVHGESHE 435
+L P II VHGE+ +
Sbjct: 603 KLKPRPERIITVHGEAQK 620
>gi|15920543|ref|NP_376212.1| cleavage and polyadenylation specificity factor large subunit
[Sulfolobus tokodaii str. 7]
gi|342306155|dbj|BAK54244.1| putative ribonuclease J [Sulfolobus tokodaii str. 7]
Length = 637
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/463 (29%), Positives = 229/463 (49%), Gaps = 30/463 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDVLLIT 82
IT LG EVGRS V + +L D G++P+ S G P D ++ ID ++IT
Sbjct: 181 ITALGGFQEVGRSAVLVETPESKVLLDVGLNPSVSYGEKLFPKLDIDQVRLEDIDAVVIT 240
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +P L K + G V+ T T+ I L+ D + V++ + + +++ +
Sbjct: 241 HAHLDHCGMVP-LLFKYGYNGPVYTTAPTRDIMALMQLDALDVAEKEGRPLPYTAKEVRK 299
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSREEDRH 199
+ LD+ + ++ IK Y AGH+LG+AM + I ++YTGD+ +
Sbjct: 300 ELLHTITLDYEEVTDIAPDIKLTFYNAGHILGSAMAHLHIGDGTHNIVYTGDFKYARTKL 359
Query: 200 LRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
L A E P+ D I+E+TYG + R E + ++I+ TIS+GGRVLIP A+GR
Sbjct: 360 LDKANDEFPRV--DTIIMETTYGDHEQENREEAEAKLIEIINRTISRGGRVLIPVLAVGR 417
Query: 258 AQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSN 313
QE++L+L++ PE +PI Y + L ++ A++ Y ++ +R + + N
Sbjct: 418 GQEIMLVLNDAMKKKLIPE---VPI-YVTGLVEEITAIHNAYPEMLSREVREAILYKDEN 473
Query: 314 PFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
PF + + +D + PS+++A+ G L G + + F D +N+ + Y E
Sbjct: 474 PFMSEFFHRIEGYREDIAQGEPSIILATSGMLNGGPAVEFFKTMAPDSRNSIIFVSYQAE 533
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQV-----HYISFSAHADYAQTSTFLKEL--MPPN 425
GTL + + +E+ +++ N+Q+ FS H+D Q FLK L P N
Sbjct: 534 GTLGRKVSDGAQEIQIIDRDGRIENIQIKMEVTRVEGFSGHSDRRQLLNFLKNLNVKPKN 593
Query: 426 IILVHGES---HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
++L HGE RL + ++ TK+ P+ S+ +
Sbjct: 594 LLLNHGEPGSIESFRRLVEREKEKIGMKGTKVYAPQILDSIRV 636
>gi|385773323|ref|YP_005645889.1| beta-lactamase [Sulfolobus islandicus HVE10/4]
gi|323477437|gb|ADX82675.1| beta-lactamase domain protein [Sulfolobus islandicus HVE10/4]
Length = 638
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 224/429 (52%), Gaps = 28/429 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 184 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAVVI 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V + + + + +++
Sbjct: 244 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPLPYSAKEVR 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+AM + I + ++YTGD+ + +
Sbjct: 303 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTK 362
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 363 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVLIPVLAVG 420
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 421 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 476
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 477 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 536
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 537 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDRRQLFNFLRTIEPKPK 596
Query: 425 NIILVHGES 433
NIIL HGE+
Sbjct: 597 NIILNHGEA 605
>gi|15669421|ref|NP_248231.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
gi|2496166|sp|Q58633.1|Y1236_METJA RecName: Full=Uncharacterized protein MJ1236
gi|1591868|gb|AAB99240.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
Length = 634
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 225/436 (51%), Gaps = 30/436 (6%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAID 77
GD I ++ LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D
Sbjct: 176 GDYWIRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLD 234
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDH +P + + G V+ T T+ + LL DY++++K +++ +
Sbjct: 235 AVIVTHAHLDHCGFIPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTS 293
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSR 194
+DI + +D+ T +++ IK + AGHVLG+A+ + I + YTGD
Sbjct: 294 KDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKF 353
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E R L A + P+ + IIESTYG + R E+ V+ T +GG+VLI
Sbjct: 354 ETSRLLEPAVCQFPRL--ETLIIESTYGAYDDVLPEREEAERELLRVVSETTDRGGKVLI 411
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +R +
Sbjct: 412 PVFGVGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKEMRQKIF 468
Query: 310 -ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF FK + N D P V++A+ G L G S + D+KNA
Sbjct: 469 HEGDNPFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYLKHLAPDEKNAI 528
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLK 419
+ GY EGTL + + S KE+ ++ NG T P+N+QV+ I FS H+D Q +++
Sbjct: 529 IFVGYQAEGTLGRKVQSGWKEIPIITRNGKTKSIPINLQVYTIEGFSGHSDRKQLIKYIR 588
Query: 420 ELMPP--NIILVHGES 433
L P II+VHGE
Sbjct: 589 RLKPSPEKIIMVHGEE 604
>gi|385806123|ref|YP_005842521.1| beta-lactamase [Fervidicoccus fontis Kam940]
gi|383795986|gb|AFH43069.1| beta-lactamase domain protein [Fervidicoccus fontis Kam940]
Length = 619
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 133/426 (31%), Positives = 217/426 (50%), Gaps = 24/426 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL-PYFD--EIDPSAIDVLLIT 82
I LG EVGRS + + IL D G++P S ++ P FD E +D ++IT
Sbjct: 161 IIALGGFQEVGRSAILVETNESKILLDAGVNPGSSSFPSIAPRFDVDEFKIEELDAIVIT 220
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH LP FL K + G V+MT AT+ I L D++ + + + ++++ +
Sbjct: 221 HAHLDHVGMLP-FLFKYGYNGPVYMTKATRDIMVLSQLDFLDIMTKEGKIPPYTQKEVKK 279
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSREEDRH 199
++ +++ ++ I+ Y AGH+LG+AM + I ++YTGD+ +
Sbjct: 280 AVLHTIPVEYGDVTDIAPDIRLTLYDAGHILGSAMAHLHIGNGLHNIVYTGDFKYAHTKL 339
Query: 200 LRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
L A + P+ + I+ESTYG R E ++I T+ +GG++L+P ++GR
Sbjct: 340 LNKATDKFPRL--ETLIMESTYGETKQPSRAEAESNLINIIRKTVQRGGKILVPVMSVGR 397
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK 316
QE++LIL E +S + +IP+Y + + A++ Y M++ + NPF
Sbjct: 398 GQEIMLILSEAFSKG-QLQDIPVYIEG-MVTEVTALHTHYPELMSQSVEKAIHLGENPFM 455
Query: 317 FKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
K+ + S D S+ GP +++A+ G L G S + D KN+ + Y VEG
Sbjct: 456 NKNFVVVQSKDKRSEALEPGPCIILATSGMLNGGPSVEYLKSLAEDPKNSLIFVSYQVEG 515
Query: 374 TLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPPNI 426
TL + I KE+T +N T +NM++H I FS H+D + +F++ E P NI
Sbjct: 516 TLGRKIKDGQKELTFLNPDGKIETIKINMEIHSIEGFSGHSDKNELISFIENIEPKPKNI 575
Query: 427 ILVHGE 432
IL HGE
Sbjct: 576 ILNHGE 581
>gi|385775961|ref|YP_005648529.1| beta-lactamase [Sulfolobus islandicus REY15A]
gi|323474709|gb|ADX85315.1| beta-lactamase domain protein [Sulfolobus islandicus REY15A]
Length = 638
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 223/429 (51%), Gaps = 28/429 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 184 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAVVI 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V + + + + +++
Sbjct: 244 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPLPYSAKEVR 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+AM + I + ++YTGD+ + +
Sbjct: 303 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTK 362
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 363 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVLIPVLAVG 420
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+Y L + A++ Y + +R + + +
Sbjct: 421 RGQEIMLIINDFMKKKLIPE---VPVYLTG-LVDEVTAIHNAYPEWLGREVREEILYKDE 476
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 477 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 536
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 537 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDRRQLFNFLRTIEPKPK 596
Query: 425 NIILVHGES 433
NIIL HGE+
Sbjct: 597 NIILNHGEA 605
>gi|229579166|ref|YP_002837564.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582079|ref|YP_002840478.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284997854|ref|YP_003419621.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|228009880|gb|ACP45642.1| beta-lactamase domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012795|gb|ACP48556.1| beta-lactamase domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284445749|gb|ADB87251.1| beta-lactamase domain protein [Sulfolobus islandicus L.D.8.5]
Length = 638
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 224/429 (52%), Gaps = 28/429 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 184 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAVVI 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V + + + + +++
Sbjct: 244 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPIPYSAKEVR 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+AM + I + ++YTGD+ + +
Sbjct: 303 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTK 362
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 363 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVLIPVLAVG 420
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 421 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 476
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 477 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 536
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 537 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDRRQLFNFLRTIEPKPK 596
Query: 425 NIILVHGES 433
NIIL HGE+
Sbjct: 597 NIILNHGEA 605
>gi|227830349|ref|YP_002832129.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|227456797|gb|ACP35484.1| beta-lactamase domain protein [Sulfolobus islandicus L.S.2.15]
Length = 638
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 224/429 (52%), Gaps = 28/429 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 184 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAVVI 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V + + + + +++
Sbjct: 244 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPIPYSAKEVR 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+AM + I + ++YTGD+ + +
Sbjct: 303 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTK 362
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 363 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVLIPVLAVG 420
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 421 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 476
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 477 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 536
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 537 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDRRQLFNFLRTIEPKPK 596
Query: 425 NIILVHGES 433
NIIL HGE+
Sbjct: 597 NIILNHGEA 605
>gi|227827653|ref|YP_002829433.1| beta-lactamase [Sulfolobus islandicus M.14.25]
gi|229584857|ref|YP_002843359.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.27]
gi|238619821|ref|YP_002914647.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.4]
gi|227459449|gb|ACP38135.1| beta-lactamase domain protein [Sulfolobus islandicus M.14.25]
gi|228019907|gb|ACP55314.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.27]
gi|238380891|gb|ACR41979.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.4]
Length = 638
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 132/429 (30%), Positives = 224/429 (52%), Gaps = 28/429 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 184 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPRLDIDQLKIEELDAVVI 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V + + + + +++
Sbjct: 244 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVVEKEGKPIPYSAKEVR 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+AM + I + ++YTGD+ + +
Sbjct: 303 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTK 362
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 363 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNRGGKVLIPVLAVG 420
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 421 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 476
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 477 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 536
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 537 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDRRQLFNFLRTIEPKPK 596
Query: 425 NIILVHGES 433
NIIL HGE+
Sbjct: 597 NIILNHGEA 605
>gi|384434275|ref|YP_005643633.1| KH-domain/beta-lactamase-domain-containing protein [Sulfolobus
solfataricus 98/2]
gi|261602429|gb|ACX92032.1| KH-domain/beta-lactamase-domain protein [Sulfolobus solfataricus
98/2]
Length = 635
Score = 195 bits (496), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 233/461 (50%), Gaps = 28/461 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 181 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAVVI 240
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V++ + + + +++
Sbjct: 241 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKEVR 299
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+ M + I + ++YTGD+ + +
Sbjct: 300 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYAKTK 359
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 360 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNKGGKVLIPVLAVG 417
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 418 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 473
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 474 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 533
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 534 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDKRQLLNFLRNIEPKPK 593
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
N+IL HGE+ + + + I TP S+ +
Sbjct: 594 NVILNHGEASSIRAFANYIREDRLGYKPNIYTPAILDSLRV 634
>gi|284174985|ref|ZP_06388954.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
98/2]
Length = 638
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 233/461 (50%), Gaps = 28/461 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 184 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAVVI 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V++ + + + +++
Sbjct: 244 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKEVR 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+ M + I + ++YTGD+ + +
Sbjct: 303 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYAKTK 362
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 363 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNKGGKVLIPVLAVG 420
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 421 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 476
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 477 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 536
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 537 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDKRQLLNFLRNIEPKPK 596
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
N+IL HGE+ + + + I TP S+ +
Sbjct: 597 NVILNHGEASSIRAFANYIREDRLGYKPNIYTPAILDSLRV 637
>gi|15897661|ref|NP_342266.1| mRNA 3'-end processing factor [Sulfolobus solfataricus P2]
gi|6015715|emb|CAB57542.1| mRNA 3'-end polyadenylation factor [Sulfolobus solfataricus P2]
gi|13813930|gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
P2]
Length = 639
Score = 195 bits (495), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 134/461 (29%), Positives = 233/461 (50%), Gaps = 28/461 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS V + +L D G++P+ + G P D ++ +D ++I
Sbjct: 185 ITALGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKMEELDAVVI 244
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P FL K ++G V+ T T+ I L+ D + V++ + + + +++
Sbjct: 245 THAHLDHCGMVP-FLFKYGYEGPVYTTVPTRDIMALMQLDSLDVAEKEGKPIPYSAKEVR 303
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDR 198
+ + LD+ + ++ I+ Y AGH+LG+ M + I + ++YTGD+ + +
Sbjct: 304 KELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYAKTK 363
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ D I+E+TYG Q R E ++I+ T+++GG+VLIP A+G
Sbjct: 364 LLDKANTEFPRV--DTLIMETTYGAQDQPNREESELELLEIINKTLNKGGKVLIPVLAVG 421
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANS 312
R QE++LI++++ PE +P+ Y + L + A++ Y + +R + + +
Sbjct: 422 RGQEIMLIINDFMKKKLIPE---VPV-YVTGLVDEVTAIHNAYPEWLGREVREEILYKDE 477
Query: 313 NPFKFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
NPF +H + +D + PS+++A+ G L G + + F D KNA + Y
Sbjct: 478 NPFTSEHFKRIEGYKEDIAKGEPSIILATSGMLNGGPAVEFFKTMAPDPKNAIIFVSYQA 537
Query: 372 EGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLK--ELMPP 424
EGTL + + KEV +++ + +NM+V + FS H+D Q FL+ E P
Sbjct: 538 EGTLGRKVRDGAKEVQILDRDGRVESIQINMEVEAVEGFSGHSDKRQLLNFLRNIEPKPK 597
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
N+IL HGE+ + + + I TP S+ +
Sbjct: 598 NVILNHGEASSIRAFANYIREDRLGYKPNIYTPAILDSLRV 638
>gi|146296048|ref|YP_001179819.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409624|gb|ABP66628.1| beta-lactamase domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 821
Score = 195 bits (495), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 229/476 (48%), Gaps = 43/476 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + GK IL D GI + L E+ DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKAGGKNILLDSGIRMKEDKLPNLQLLREL--GGADVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHA-TKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRS 143
LDH SLP L + F T+ TK + K+LL D +K+ +++ ++ E+++
Sbjct: 61 LDHIGSLP--LIAREYPHIFFYTNQPTKDLIKVLLYDSLKIMDAKEDEIPIYAEKNVEDL 118
Query: 144 MDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
+D+ F+ T E + GIK + AGH+LGA+M + VLYTGD+S ++ +
Sbjct: 119 LDRTITYGFNYTFEPLEGIKVTFFPAGHILGASMIFIQTQEGSVLYTGDFSTDKQLTVDK 178
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
A +P+ PD+ I ESTYG +LH RN E+R + I+ IS+GG+VLIPAFA+GRAQE++
Sbjct: 179 ASIPKIRPDVVICESTYGDRLHTNRNYEEERLFNSIYEFISKGGKVLIPAFAIGRAQEII 238
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP 322
LIL Y N+ + + ++ + VY+ ++ R + K + I
Sbjct: 239 LILRNYMKKKKVEFNV---FIDGMVREVIRVYKNNPTFLSSRYYKKV-----LKGEEIFL 290
Query: 323 LNSIDDFSD----------VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
++ID +D P V+++S G L G S + ++ I GY E
Sbjct: 291 SDNIDIITDKKQREEIMSSSDPCVIISSSGMLTGGPSVFYAEKLVENQNALIAITGYQDE 350
Query: 373 GT-----LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
+ L T + E + +NG + +V SAHAD FL L P ++
Sbjct: 351 ESPGRKLLELTELPESERKIELNGKEYEVKCKVEKYGLSAHADRDSILGFLAMLKPKTVV 410
Query: 428 LVHGESHEMGRLKTKLMTELADCNTKIITPKNCQ----SVEM------YFNSEKMA 473
HG + +L + E+ + ++ P+N + S+E +FN +K++
Sbjct: 411 FAHGSEEAISQLSDMAIKEIE---SAVLIPQNGEMNTISIEKPRRQLSFFNVKKLS 463
>gi|218884598|ref|YP_002428980.1| mRNA 3'-end polyadenylation factor [Desulfurococcus kamchatkensis
1221n]
gi|218766214|gb|ACL11613.1| mRNA 3'-end polyadenylation factor [Desulfurococcus kamchatkensis
1221n]
Length = 647
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 227/440 (51%), Gaps = 24/440 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYF--DEIDPSAIDVLLI 81
+T LG EVGRS + + + IL D G++ A P+ D + +D +++
Sbjct: 190 VTGLGGFREVGRSAILVETRESKILLDLGLNTGTIDDPNKAYPFLEIDSLRLEELDGVVV 249
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P L K ++G V++T T+ + ++L D + V++ S + F E+DI+
Sbjct: 250 THAHLDHVGLVP-ILYKYGYRGPVYVTKPTRELMIVMLKDLIDVTRRSGRYIPFSERDIS 308
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDR 198
+ +D+ + +V IK Y AGH+LG+A+ + I G+ ++YTGD+ E R
Sbjct: 309 TMLLHTITVDYDEVTDVAPDIKLTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYSETR 368
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
L A + I+E TYG L + R E++ D++ T + G VLIP FA+GR
Sbjct: 369 LLNKANTVFPRVETLIMEGTYGATLQESRIQAEQQLIDIVKRTSERNGVVLIPVFAVGRG 428
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPF 315
QE++LIL+E N P + Y L + A++ Y +N+ +R N NPF
Sbjct: 429 QEIILILNEAMKNGRIPRMN----IYVEGLVNEVTAIHTQYPEYLNKSLREAIYNGENPF 484
Query: 316 KFKHISPLNS---IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
+ + P+ + D + PS+++A+ G L G + + SD++N+ V GY E
Sbjct: 485 TSEWLKPIETGVARPDIIEDKPSIIIATSGMLTGGPAVDYLRLLASDERNSLVFVGYQAE 544
Query: 373 GTLAKTIISEPKEVTLM--NGLTA-PLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
GTL + I +E+T++ N + A P+ ++V+ I FS H+D + + +++ P I
Sbjct: 545 GTLGRKIKDGAREITMVVENKVEAIPIKLEVYSIEGFSGHSDQRELLEYARDVSPRPRKI 604
Query: 427 ILVHGESHEMGRLKTKLMTE 446
+L HGE + L T L ++
Sbjct: 605 LLNHGEPTALSTLATLLRSD 624
>gi|269986876|gb|EEZ93153.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 629
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 143/434 (32%), Positives = 215/434 (49%), Gaps = 22/434 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
I+ LGA VGRS V + +IL D G+ + + +P D E D S + ++ITH
Sbjct: 178 ISALGAFRHVGRSAVLVQTPISSILLDAGVDVS-NPKEPVPRVDAPEFDISKLAAVVITH 236
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH LP L K + G V+ T T+ + LL DY+ ++ + +LFD D+ +
Sbjct: 237 SHLDHCGFLPA-LYKYGYNGPVYSTAPTRDVMTLLHLDYINLASRTNSKLLFDVDDVKKM 295
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHL 200
+ L FH+ ++ I+ + AGH+LG+AM ++I VLYTGD+ + + L
Sbjct: 296 LKHSITLPFHEVTDITPDIRITLHNAGHILGSAMIHLNIGNGFYNVLYTGDFKYDNSKTL 355
Query: 201 RAAELPQFSPDICIIESTYGVQLH-QP-RNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
AE + I+ESTYG + QP R E+ F D+I TI+ G+VLIP +GRA
Sbjct: 356 NRAETQFERVETLIMESTYGGESDTQPSRTETEQFFLDIISKTIANNGKVLIPVLGVGRA 415
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA--NSNPFK 316
QEL+L+++E W + P+ L A+Y Y MN RN+ N+NPF
Sbjct: 416 QELMLLIEE-WQRYGLLPEAPVVVDGMLW-DVTAIYTVYPEFMNSETRNRIIAHNNNPFL 473
Query: 317 ---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
FKH P +++A+ G L G + F C D KNA V+ Y G
Sbjct: 474 SPIFKHTVSEEERQQVLSGSPVIILATSGMLNGGPAVSYFANLCEDPKNAVVLVSYQGIG 533
Query: 374 TLAKTIISEPKEVTL-MNGLTAPLNMQVHYIS---FSAHADYAQTSTFLKELMPP--NII 427
TL +TI + +EV + +NG ++ S FS H+D Q F+ ++ P II
Sbjct: 534 TLGRTIQNGGREVDIELNGKLRHFSVSALVYSIEGFSGHSDRKQLERFVNDIRPKPRKII 593
Query: 428 LVHGESHEMGRLKT 441
+ HGE ++ L +
Sbjct: 594 IGHGEEGKILELAS 607
>gi|390939088|ref|YP_006402826.1| KH-domain/beta-lactamase-domain-containing protein [Desulfurococcus
fermentans DSM 16532]
gi|390192195|gb|AFL67251.1| KH-domain/beta-lactamase-domain protein [Desulfurococcus fermentans
DSM 16532]
Length = 647
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 134/440 (30%), Positives = 227/440 (51%), Gaps = 24/440 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYF--DEIDPSAIDVLLI 81
+T LG EVGRS + + + IL D G++ A P+ D + +D +++
Sbjct: 190 VTGLGGFREVGRSAILVETRESKILLDLGLNTGTIDDPNKAYPFLEIDSLRLEELDGVVV 249
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P L K ++G V++T T+ + ++L D + V++ S + F E+DI+
Sbjct: 250 THAHLDHVGLVP-ILYKYGYRGPVYVTKPTRELMIVMLKDLIDVTRRSGRYIPFSERDIS 308
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDR 198
+ +D+ + +V IK Y AGH+LG+A+ + I G+ ++YTGD+ E R
Sbjct: 309 TMLLHTITVDYDEVTDVAPDIKLTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYSETR 368
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
L A + I+E TYG L + R E++ D++ T + G VLIP FA+GR
Sbjct: 369 LLNKANTVFPRVETLIMEGTYGATLQESRIQAEQQLIDIVKRTSERNGVVLIPVFAVGRG 428
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPF 315
QE++LIL+E N P + Y L + A++ Y +N+ +R N NPF
Sbjct: 429 QEIILILNEAMKNGRIPRMN----IYVEGLVNEVTAIHTQYPEYLNKSLREAIYNGENPF 484
Query: 316 KFKHISPLNS---IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
+ + P+ + D + PS+++A+ G L G + + SD++N+ V GY E
Sbjct: 485 TSEWLKPIETGVARPDIIEDKPSIIIATSGMLTGGPAVDYLRLLASDERNSLVFVGYQAE 544
Query: 373 GTLAKTIISEPKEVTLM--NGLTA-PLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
GTL + I +E+T++ N + A P+ ++V+ I FS H+D + + +++ P I
Sbjct: 545 GTLGRKIKDGAREITMVVENKVEAIPIKLEVYSIEGFSGHSDQRELLEYARDVSPRPRKI 604
Query: 427 ILVHGESHEMGRLKTKLMTE 446
+L HGE + L T L ++
Sbjct: 605 LLNHGEPTALSTLATLLRSD 624
>gi|55980221|ref|YP_143518.1| metallo-beta-lactamase [Thermus thermophilus HB8]
gi|81600562|sp|Q5SLP1.1|RNSE_THET8 RecName: Full=Ribonuclease TTHA0252
gi|301598475|pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598476|pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598477|pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598478|pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598479|pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598480|pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598481|pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598482|pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598483|pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598484|pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598485|pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598486|pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|55771634|dbj|BAD70075.1| metallo-beta-lactamase superfamily protein [Thermus thermophilus
HB8]
Length = 431
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 202/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|389852761|ref|YP_006354995.1| mRNA 3'-end processing factor [Pyrococcus sp. ST04]
gi|388250067|gb|AFK22920.1| putative mRNA 3'-end processing factor [Pyrococcus sp. ST04]
Length = 651
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 232/466 (49%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG--MAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESFVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLKEGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 251 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 311 KDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
+ L A + ++ESTYG + PR EKR +VIH TI +GG+VLIPA
Sbjct: 371 IPTKLLEPANAKFPRLETLVMESTYGGSNDIQMPREEAEKRLIEVIHHTIKRGGKVLIPA 430
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L+EY + PIY + + A++ Y ++ R+R Q
Sbjct: 431 MAVGRAQEVMMVLEEYARIG--GIDAPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D KNA +
Sbjct: 488 GYNPFLSEIFHPVANSRERQDIIDSKEPAIIIASSGMLVGGPSVEYFKQLAPDPKNAIIF 547
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + + +E+ ++ G T +NM VH I FS HAD + ++ ++
Sbjct: 548 VSYQAEGTLGRQVQNGAREIPMIGEGGRTEVIKVNMDVHTIDGFSGHADRRELMNYVAKV 607
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 608 RPRPERVITVHGEPQKCLDLATSIHKKFG-ISTR--APNNLDTIRL 650
>gi|312127068|ref|YP_003991942.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777087|gb|ADQ06573.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
Length = 822
Score = 194 bits (494), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 132/450 (29%), Positives = 216/450 (48%), Gaps = 25/450 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + K IL D GI + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKACNKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSM 144
LDH SLP + + + + TK + K+LL D +++ +++ +++ ++ E+++ +
Sbjct: 61 LDHIGSLP-LIAREYPQIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDLL 119
Query: 145 DKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+ F+ T E + GIK ++AGH+LGA+M + +LYTGD+S ++ + A
Sbjct: 120 DRTLTYGFNYTFEPIEGIKVTFFSAGHILGASMIFIQTQEGSILYTGDFSADKQLTVDKA 179
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+P+ PDI I ESTYG +LH R+ E+R + + ISQGG+VLIPAFA+GRAQE++L
Sbjct: 180 SVPKIRPDIVICESTYGDRLHTNRSFEEERLFNTVAEVISQGGKVLIPAFAIGRAQEIIL 239
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPL 323
IL Y N+ + + ++ + VY+ ++ R + +
Sbjct: 240 ILRNYMKKRKVSFNV---FIDGMVREVIRVYRNNPTYLSSRYYKRVLKGEEIFLA--DNI 294
Query: 324 NSIDD-------FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
N + D S P V+++S G L G S + + I GY E
Sbjct: 295 NVVSDKKQREEIISSSDPCVIISSSGMLTGGPSVFYAEKIVQSQNALIAITGYQDEEAPG 354
Query: 377 KTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+ ++ E + +NG + +V SAH+D + FL L P +I HG
Sbjct: 355 RKLLELAELPENERKIDLNGKEYEVKCRVEKYGLSAHSDRDRILGFLATLRPRTVIFAHG 414
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
+ ++ + EL + II P+N +
Sbjct: 415 SEDAISQISDMAVKEL---ESNIIVPQNGE 441
>gi|410721908|ref|ZP_11361230.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
gi|410598026|gb|EKQ52618.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
Length = 634
Score = 194 bits (494), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 245/471 (52%), Gaps = 29/471 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD--EID 72
P+S E + + +T LG EVGRS ++M IL DCG++ A S ++ PY + E
Sbjct: 171 PLSMENEWVRLTALGGFREVGRSSIFMQTSNSKILLDCGVNVAGSDDKSSYPYLNVPEFV 230
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I+H HLDH+ LPY ++G V+ T T+ + LL D++ ++
Sbjct: 231 LDNLDAVIISHAHLDHSGFLPYLFH-YGYEGPVYCTTPTRDLMTLLQLDHIDIAHREDSP 289
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYT 189
+ F+ + + +S+ LD+ + ++ I+ + AGH+LG+A+ + I + +YT
Sbjct: 290 LPFNVKHVKKSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNFVYT 349
Query: 190 GDYSREEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQG 245
GD+ E R L A + P+ ++ESTYG + RN EK I+ T+ +
Sbjct: 350 GDFKYERSRLLEPAVSKFPRIES--LVMESTYGGHEDVQPTRNDAEKELIKTIYHTLERK 407
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G++LIP FA+GRAQEL+++LDEY H +PIY + + A++ +++ +
Sbjct: 408 GKILIPVFAVGRAQELMIVLDEYI-RHGIIDEVPIYIDG-MIWEATAIHTARPEYLSKDL 465
Query: 306 RNQF--ANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDK 360
R+Q NPF + +N +++ D+ P++++++ G L G S + F C D+
Sbjct: 466 RDQIFHMGRNPFISEVFHKVNGVEERKDIVEGEPAIILSTSGMLTGGNSVEYFKWLCEDE 525
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLM-NGLTAPLNMQVHYIS---FSAHADYAQTST 416
+++ V GY EG+L + + KE+ L G T N++++ + FS H+D Q
Sbjct: 526 RSSLVFVGYQAEGSLGRRLQKGWKEIPLKEEGKTNVYNVKMNIKTIEGFSGHSDRRQLMD 585
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++ + P I++ HG++++ L + + TK TP N ++V +
Sbjct: 586 YVRRISPKPEKILICHGDNYKTLDLASSIYRSYK-IETK--TPMNLETVRI 633
>gi|14520957|ref|NP_126432.1| mRNA 3'-end processing factor, [Pyrococcus abyssi GE5]
gi|5458174|emb|CAB49663.1| Cleavage and polyadenylation specficity factor [Pyrococcus abyssi
GE5]
Length = 651
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 233/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 251 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH T+ +GG+VLIPA
Sbjct: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 430
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L++Y + PIY + + A++ Y ++ R+R Q
Sbjct: 431 MAVGRAQEVMMVLEDYARIGA--IDAPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D +N+ +
Sbjct: 488 GYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIF 547
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ G T +NM+VH I FS HAD + ++ ++
Sbjct: 548 VSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKV 607
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 608 RPRPERVITVHGEPQKCLDLATSIHRKFG-LSTR--APNNLDTIRL 650
>gi|288561234|ref|YP_003424720.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
gi|288543944|gb|ADC47828.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
Length = 636
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 134/437 (30%), Positives = 221/437 (50%), Gaps = 29/437 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG------MAALPYFDEIDPSA 75
D + +T +G EVGRSC+ + +L DCG++ A M +P F D
Sbjct: 178 DWVRLTAMGGFKEVGRSCMLLQTPNSRVLLDCGVNVAGQDDKTSFPMLGVPEFSIQD--- 234
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H HLDH +PY L ++G V+ T AT+ + LL DY+ ++ + F
Sbjct: 235 LDAVVLSHAHLDHCGFIPY-LYHYGYEGPVYCTSATRDLMTLLQMDYIDIAHRDNNPLPF 293
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDY 192
+ + + + + LD+ +++ IK + AGH++G+AM F + +LYTGD+
Sbjct: 294 NAKHVQKEVKHTITLDYGVVTDISPDIKLTLHNAGHIIGSAMCHFHIGDGAHNLLYTGDF 353
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E+ R L A + CI+ESTYG + RN EK I+ TI +GG+VL+
Sbjct: 354 KYEKSRLLEPATTRFPRVESCIMESTYGGHEDVTPSRNNAEKELMKTIYKTIKRGGKVLL 413
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P FA+GRAQEL+++L+EY +H +PI+ + + AV+ +++ +R+Q
Sbjct: 414 PVFAVGRAQELMIVLEEYM-HHDIIETVPIHLDG-MIWEATAVHTARPEYLSKELRDQIL 471
Query: 310 -ANSNPF---KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ NPF F + + + PS+++++ G + G S + F C DKKN +
Sbjct: 472 HMSRNPFMTESFNQVQNNAERKEIVEGEPSIILSTSGMMTGGNSVEYFKWLCEDKKNTLI 531
Query: 366 IPGYVVEGTLAKTIISEPKEVTL--MNGLTAPLN--MQVHYIS-FSAHADYAQTSTFLKE 420
GY EG+L + I K++ +G T N M+V I FS H++ Q F K
Sbjct: 532 FVGYQSEGSLGRKIQKGHKQLPFEDEDGKTRVFNVEMEVKTIEGFSGHSNRRQLMEFAKR 591
Query: 421 L--MPPNIILVHGESHE 435
L P II HG+ ++
Sbjct: 592 LHPRPDKIITCHGDPYK 608
>gi|380741511|tpe|CCE70145.1| TPA: mRNA 3'-end processing factor, putative [Pyrococcus abyssi
GE5]
Length = 648
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 137/466 (29%), Positives = 233/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 188 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 308 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 367
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH T+ +GG+VLIPA
Sbjct: 368 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHQTLKRGGKVLIPA 427
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L++Y + PIY + + A++ Y ++ R+R Q
Sbjct: 428 MAVGRAQEVMMVLEDYARIGA--IDAPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 484
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D +N+ +
Sbjct: 485 GYNPFLSEIFHPVANSKERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIF 544
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ G T +NM+VH I FS HAD + ++ ++
Sbjct: 545 VSYQAEGTLGRQVQSGVREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKV 604
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 605 RPRPERVITVHGEPQKCLDLATSIHRKFG-LSTR--APNNLDTIRL 647
>gi|449518964|ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like, partial [Cucumis
sativus]
Length = 472
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 160/282 (56%), Gaps = 10/282 (3%)
Query: 171 VLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR 230
VLGAAMF + ++YTGDY+ DRHL AA++ + D+ I ESTY + + R
Sbjct: 1 VLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITESTYATTIRDSKYAR 60
Query: 231 EKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAK 288
E+ F +H+ ++ GG+VLIP FALGRAQEL ++LD+YW E N+ PIY ++ L
Sbjct: 61 EREFLKAVHNCLASGGKVLIPTFALGRAQELCVLLDDYW----ERMNLKFPIYVSAGLTV 116
Query: 289 KCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLN-SIDDFSDVGPSVVMASPGGLQSG 347
+ Y+ I +++++ + N F FK++ + S+ D GP V+ A+PG + SG
Sbjct: 117 QANMYYKMLISWTSQKVKETYTTRNAFDFKNVQKFDRSMIDAP--GPCVLFATPGMISSG 174
Query: 348 LSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS-EPKEVTLMNGLTAPLNMQVHYISFS 406
S ++F W K N +PGY V GT+ ++S +P ++ L + QVH ++FS
Sbjct: 175 FSLEVFKRWAPSKLNLITLPGYCVAGTVGHKLMSGKPTKIDLDKVTQIDVQCQVHQLAFS 234
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA 448
H D +K L P ++ILVHGE +M LK ++ +EL
Sbjct: 235 PHTDSKGIMDLVKFLSPKHVILVHGEKPKMAVLKERIHSELG 276
>gi|289192183|ref|YP_003458124.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938633|gb|ADC69388.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
Length = 634
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 223/436 (51%), Gaps = 30/436 (6%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAID 77
GD I ++ LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D
Sbjct: 176 GDYWIRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLD 234
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDH +P + + G V+ T T+ + LL DY++++K +++ +
Sbjct: 235 AVIVTHAHLDHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTS 293
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSR 194
+DI + +D+ T +++ IK + AGHVLG+A+ + I + YTGD
Sbjct: 294 KDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKF 353
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E R L A + P+ + IIESTYG + R E+ V+ T +GG+VLI
Sbjct: 354 ETSRLLEPAVCQFPRL--ETLIIESTYGAYDDVLPEREEAERELLRVVSETTDKGGKVLI 411
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +R +
Sbjct: 412 PVFGVGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKEMRQKIF 468
Query: 310 -ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF FK + N D P V++A+ G L G S + D+KNA
Sbjct: 469 HEGDNPFLSEVFKRVGSTNERRRVIDSDEPCVILATSGMLTGGPSVEYLKHLAPDEKNAI 528
Query: 365 VIPGYVVEGTLAKTIISEPKE--VTLMNGLTA--PLNMQVHYI-SFSAHADYAQTSTFLK 419
+ GY EGTL + + KE +T NG T P+N+QV+ I FS H+D Q +++
Sbjct: 529 IFVGYQAEGTLGRKVQRGWKEIPITTRNGKTKSIPINLQVYTIEGFSGHSDRKQLIKYIR 588
Query: 420 ELMPP--NIILVHGES 433
L P II+VHGE
Sbjct: 589 RLKPSPEKIIMVHGEE 604
>gi|119389195|pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389196|pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389197|pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
gi|119389198|pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 199/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGXFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV ++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLXEIVLEDALKVX----DEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPXAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPXVVLAGSGXLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQ--GEPRVVLVHGEE 403
>gi|261402298|ref|YP_003246522.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus vulcanius M7]
gi|261369291|gb|ACX72040.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
vulcanius M7]
Length = 634
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 224/436 (51%), Gaps = 30/436 (6%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAID 77
GD I ++ LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D
Sbjct: 176 GDYWIRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLD 234
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH +P + + G V+ T T+ + LL DY++++K +++ +
Sbjct: 235 AVIITHAHLDHCGFVPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYSS 293
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSR 194
+DI + +D+ T +++ IK + AGHVLG+A+ + I + YTGD
Sbjct: 294 KDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKF 353
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E R L A + P+ + IIESTYG + R E+ V+ T +GG+VLI
Sbjct: 354 ETSRLLEPAVCQFPRL--ETLIIESTYGAYDDVLPEREEAERELLKVVSETTDKGGKVLI 411
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +R +
Sbjct: 412 PVFGVGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKEMRQKIF 468
Query: 310 -ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF FK + N D P V++A+ G L G S + D+KNA
Sbjct: 469 HEGDNPFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYLKHLAPDEKNAI 528
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLK 419
+ GY EGTL + + KE+ ++ NG T P+N+QV+ I FS H+D Q +++
Sbjct: 529 IFVGYQAEGTLGRKVQRGWKEIPIVTRNGKTKSIPINLQVYTIEGFSGHSDRKQLIKYVR 588
Query: 420 ELMPP--NIILVHGES 433
L P II+VHGE
Sbjct: 589 RLKPSPEKIIMVHGEE 604
>gi|255311938|pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311939|pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311940|pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311941|pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + F HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFQGHAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|156936804|ref|YP_001434600.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156565788|gb|ABU81193.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 652
Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 144/467 (30%), Positives = 230/467 (49%), Gaps = 34/467 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDPSAIDVLLITHF 84
IT LGA EVGRS + + K +L D G + +Y P +E+ +D +++TH
Sbjct: 184 ITALGAFKEVGRSAILLETKESKVLLDFGANVGSYDPQKHFPKVEEVPIDELDAVIVTHA 243
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH +P+ L K ++G V++T T+ + L+ DY++V++ + + + E DIN +
Sbjct: 244 HLDHCGLVPW-LYKYGYRGPVYVTQPTRDLMYLVQKDYIEVARKEGKPVPYTESDINSML 302
Query: 145 DKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLR 201
+ L++ + +V IK Y AGH+LG+AM + + ++YTGD+ R L
Sbjct: 303 LRTIALNYGEVTDVAPDIKLTFYNAGHILGSAMAHLHVGEGLFNLVYTGDFKYGYTRLLD 362
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
A + I+ESTYG Q PR + E+ D+I+ TI +GG VLIP A+GRAQE+
Sbjct: 363 KANTQFPRVEAVIMESTYGTQDLPPRELAERLLIDIINKTIEKGGFVLIPVLAVGRAQEI 422
Query: 262 LLILDEYWSNH----PEFHNIPIYYASPL--AKKCMAVYQTYIL-SMNERIRNQFANSNP 314
LL+L + N PE +PIY + A A Y ++ S+ ERI NP
Sbjct: 423 LLLLVDAVQNKLIKSPEGGAVPIYLDGMVYEATAIHAAYPEWLAKSVKERI---IKGENP 479
Query: 315 FKFKHISPLNSI--------DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
F + + S+ ++ + P V++A+ G L G S + F D KN+ V
Sbjct: 480 FLADFVHKVESVSIEGGISREEVLESEPGVILATSGMLTGGPSLEYFRKLAPDPKNSIVF 539
Query: 367 PGYVVEGTLAKTIISEPKEVTLM---NGLTAPLNMQV--HYIS---FSAHADYAQTSTFL 418
Y GTL +T+ V + +G + ++V H S FS H+ ++ ++
Sbjct: 540 VAYQAAGTLGRTLKEGADRVEIAINEDGKSKLYQLEVRSHVFSVEGFSGHSSRSELINWV 599
Query: 419 KELM--PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
K + P NIIL HGE + L ++++ KI TP S+
Sbjct: 600 KSVTPRPKNIILNHGEPSRIEGL-ARVLSRTVARGMKIYTPNIRDSI 645
>gi|410697892|gb|AFV76960.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus oshimai JL-2]
Length = 430
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 207/426 (48%), Gaps = 24/426 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV SC + +G+ +L DCG+ P DP ++D +L+TH H
Sbjct: 3 IVPFGAAREVTGSCHLLLAEGRRVLLDCGMFQQKEERNRGPL--GFDPRSLDAVLLTHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T T + +++L D ++V +E+ F+E+D+
Sbjct: 61 LDHVGRLPRLF-REGYRGPVYATRGTLLLMRIVLEDALRV----MEEPFFEEKDLEALYA 115
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + + G ++Y+GD E L
Sbjct: 116 HLRPLEYGEWLRMGDLSLSFGQAGHLPGSAFVVAEGEGRTLVYSGDLGNREKTVLPD--- 172
Query: 206 PQFSP--DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
P F P D+ + E TYG + H+P F +++ + +GG+V IP FA+ RAQE+L
Sbjct: 173 PSFPPKADLVVSEGTYGDRPHRPFAATVAEFLEILGRVLGRGGKVFIPTFAVERAQEILY 232
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISP 322
+L + N PIY SP+A + + +Y + +E ++ F NPF+ + +
Sbjct: 233 LL---YQNGHLLPKAPIYLDSPMAGRVLELYPRLVPYFSEEVQAHFLKGKNPFRPRGLEV 289
Query: 323 LNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+ ++ + GP VV+A G L G D KNA V GY G L
Sbjct: 290 VEGVEASKALTRSPGPMVVLAGSGMLHGGRILHHLKQGLRDPKNALVFVGYQPRGGLGAE 349
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
II+ P+ VTL+ G + PL +VH + FS HA + +L ++LVHGE ++
Sbjct: 350 IIARPERVTLL-GESVPLRAEVHTLGGFSGHAGQDELLDWLSGQK--RVVLVHGEEEKLL 406
Query: 438 RLKTKL 443
L +L
Sbjct: 407 ALGQRL 412
>gi|84489102|ref|YP_447334.1| exonuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372421|gb|ABC56691.1| predicted exonuclease [Methanosphaera stadtmanae DSM 3091]
Length = 635
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 130/436 (29%), Positives = 231/436 (52%), Gaps = 23/436 (5%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFD--EIDPSAI 76
+ D + +T LG EVGRSC+++ ++ DCG++ A A P+ + E + +
Sbjct: 175 DNDWVRLTSLGGFREVGRSCLFLQTPNSKVILDCGVNVAGIDEKTAYPFLNVPEFNLQDL 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH +PY L + G + T T+ + LL D++ +S + + F+
Sbjct: 235 DAVIITHAHLDHTGFVPY-LYHYGYDGPTYCTTPTRDMMTLLQQDHLDISHREDKPLPFN 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYS 193
+D+ +++K LD+ Q +++ I+ + AGH++G+AM ++I + LYTGD+
Sbjct: 294 IKDVKETINKTITLDYGQVTDISPDIRLTLHDAGHIVGSAMAHLNIGDGKHNFLYTGDFK 353
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQP--RNIREKRFTDVIHSTISQGGRVLIP 251
E+ R L + + ++ESTYG + RN EK I+ TI +GG++LIP
Sbjct: 354 NEQSRLLGTPKQHFARIESMVMESTYGGREDNTPTRNTAEKELVKAIYDTIQKGGKILIP 413
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
FA+GRAQE++++L+E+ N +P+Y + + A++ + ++ ++ Q
Sbjct: 414 VFAVGRAQEIMIVLEEFI-NRGILGKVPVYLDG-MIWEATAIHTAHPEFLSNELQKQIFH 471
Query: 310 ANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
A NPF + + + + P V++++ G L G S + F C D+KN +
Sbjct: 472 AGENPFTSDVFNKVTNNEQRRKLLESNEPCVILSTSGMLTGGNSVEYFKELCEDEKNRII 531
Query: 366 IPGYVVEGTLAKTIISEPKEVTL-MNGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
GY EG+L + I EV L +G+T +N++V I FS H+D Q ++++L
Sbjct: 532 FVGYQSEGSLGRRIQKGFDEVPLEKDGVTQLFHINIEVTTIDGFSGHSDRKQLMEYVRKL 591
Query: 422 MP-PNIILV-HGESHE 435
P P+ ILV HG++++
Sbjct: 592 SPKPDKILVCHGDAYK 607
>gi|337284211|ref|YP_004623685.1| mRNA 3'-end processing factor [Pyrococcus yayanosii CH1]
gi|334900145|gb|AEH24413.1| mRNA 3'-end processing factor, putative [Pyrococcus yayanosii CH1]
Length = 648
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 235/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG--MAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 188 ITGLGGFREVGRSALLVQTDESYVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLKEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + ++ L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQEPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 308 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDFKF 367
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++E+TYG + PR EKR +VIH TI +GG+VLIPA
Sbjct: 368 IPTRLLEPANARFPRLETLVMEATYGGSNDIQMPREEAEKRLIEVIHRTIKRGGKVLIPA 427
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L+EY ++PIY + + A++ Y +++R+R Q +
Sbjct: 428 MAVGRAQEVMMVLEEYARIG--GIDVPIYLDG-MIWEATAIHTAYPEYLSKRLREQIFHE 484
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D KN+ +
Sbjct: 485 GYNPFLNEVFKPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSMIF 544
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + + +E+ ++ G T +NM+V+ I FS HAD + ++ +
Sbjct: 545 VSYQAEGTLGRQVQNGAREIPMVGEGGKTEVIKVNMEVYTIDGFSGHADRRELMNYVARV 604
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L T + + +T+ P N ++ +
Sbjct: 605 KPRPERVITVHGEPQKCLDLATSIHKKFG-LSTR--APNNLDTIRL 647
>gi|255311942|pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311943|pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311944|pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311945|pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + F HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFYGHAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|325958080|ref|YP_004289546.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329512|gb|ADZ08574.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
AL-21]
Length = 634
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 138/474 (29%), Positives = 244/474 (51%), Gaps = 31/474 (6%)
Query: 13 RDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD-- 69
R+ P E +L T LG EVGRS +++ I+ DCG++ A S ++ PY +
Sbjct: 170 RELPSENEWTRL--TSLGGFREVGRSSLFLQTSNSKIMLDCGVNVAGSDDKSSYPYLNVP 227
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
E +D ++I+H HLDH+ LPY L ++G V+ T T+ + LL D++ ++
Sbjct: 228 EFVLDDLDAVIISHAHLDHSGFLPY-LYHYGYEGPVYCTTPTRDLMTLLQLDHIDIAHRE 286
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--V 186
+ F+ + + +S+ LD+ + ++ I+ + AGH+LG+A+ + I +
Sbjct: 287 DNPLPFNIKHVKKSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNF 346
Query: 187 LYTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTI 242
+YTGD+ E R L A + P+ + ++ESTYG + RN EK I+ T+
Sbjct: 347 VYTGDFKYERSRLLEPAVSKFPRI--ESLVMESTYGGHDDVQPSRNDAEKELVKTIYRTL 404
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
+GG+VL+P FA+GRAQEL+++LDEY H +P++ + + A++ ++
Sbjct: 405 ERGGKVLMPVFAVGRAQELMIVLDEYI-RHGMIEEVPVFIDG-MIWEATAIHTARPEYLS 462
Query: 303 ERIRNQF--ANSNPF---KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+ +R+Q NPF F ++ N + + P++++++ G L G S + F C
Sbjct: 463 KDLRDQIFHMGRNPFISDVFHKVNGGNERQEIVEGEPAIILSTSGMLTGGNSVEYFKQLC 522
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLM-NGLTAPLNMQVHYIS---FSAHADYAQ 413
D+KN+ V GY EG+L + + KE+ L G T N+++H + FS H+D Q
Sbjct: 523 GDEKNSLVFVGYQAEGSLGRRLQKGWKEIPLKEEGKTNVYNVKMHIKTIEGFSGHSDRRQ 582
Query: 414 TSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++ L P I+ HG++++ L + + TK TP N ++V +
Sbjct: 583 LMDYVRRLSPKPEKILFCHGDNYKTLDLASSIYRSYK-IETK--TPMNLETVRI 633
>gi|57641363|ref|YP_183841.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus kodakarensis KOD1]
gi|57159687|dbj|BAD85617.1| cleavage and polyadenylation specficity factor subunit homolog
[Thermococcus kodakarensis KOD1]
Length = 648
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 140/468 (29%), Positives = 235/468 (50%), Gaps = 36/468 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD +D +D
Sbjct: 188 ITGLGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ ++ + L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNGVEPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + ++ I+ + AGH+LG+++ + I + TGD+
Sbjct: 308 KDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKF 367
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
R A P+ + ++ESTYG PR EKR +VIH T+ +GG+VLI
Sbjct: 368 IPTRLFEPAVSRFPRL--ETLVMESTYGGSNDYQMPREEAEKRLIEVIHQTLKRGGKVLI 425
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PA A+GRAQE++++L+EY +PIY + + A++ Y +++ IR Q
Sbjct: 426 PAMAVGRAQEIMMVLEEYARVG--GIEVPIYLDG-MIWEATAIHTAYPEYLSKHIREQIF 482
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF FK ++ D D G P++++A+ G L G S + F D KN+
Sbjct: 483 HEGYNPFLNPIFKSVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSI 542
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFLK 419
+ Y EGTL + + +E+ ++ +G T + NM+VH I FS HAD + +++
Sbjct: 543 IFVSYQAEGTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGHADRRELMSYVA 602
Query: 420 EL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ P II VHGE+H+ L + + + +T+ P N ++ +
Sbjct: 603 RVRPRPERIITVHGEAHKCLDLSSSIHKKFG-ISTR--APNNLDAIRL 647
>gi|433656047|ref|YP_007299755.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294236|gb|AGB20058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 820
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 131/450 (29%), Positives = 225/450 (50%), Gaps = 24/450 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC ++ GK IL DCGI + S LP F I + +DV++I+H H+DH
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMS-SSKDNLPDFQLIQENGGVDVIVISHAHMDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + +++MTHA K + ++LL D +K+ + E ++ E + +++I
Sbjct: 66 IGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEKEAEIPVYAEIHVREMLNRII 124
Query: 149 VLDFHQTVE---VNGIKFWCYTAGHVLGAA-MFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
T +K Y+AGH+ GAA +++V G + Y+GD+SR + A
Sbjct: 125 CYTPGHTFAPFMGTDLKVTLYSAGHIAGAASIYIVGNEG-SIFYSGDFSRFRQNTIEGAS 183
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
+P+ PD+ ESTYG +LH R + E R + I++ + GG+VLIPAFALGRAQE++LI
Sbjct: 184 IPKLRPDVAFFESTYGDKLHANRELEESRLVEKINAVLKNGGKVLIPAFALGRAQEIILI 243
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKFKHISPL 323
L + + + Y + K +Y+ + + + + F F ++ P+
Sbjct: 244 LKKAINKGMINSKV---YVDGMVKDICRIYKLNPNYLRQNLAKKIFKGGEIFFDDNVVPV 300
Query: 324 NSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII- 380
+ + D+ P V+++S G L G S+ + D+KN I GY E + + ++
Sbjct: 301 DRPEMREDIIKEPCVIVSSSGMLTGGPSQWYAEKLADDEKNLIAITGYQDEESPGRKLLE 360
Query: 381 -----SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
SE K++ L + P+ V SAHAD ++ + + L P + LVHG+
Sbjct: 361 LTDEKSEDKKLKLGDK-EIPVKCAVDKFGLSAHADMSEILSLVNNLHPKKVFLVHGDPDT 419
Query: 436 MGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ L ++ D + + P N + ++
Sbjct: 420 INFLGKEIQK---DIKSDVYVPLNGDAYDI 446
>gi|212223311|ref|YP_002306547.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
gi|212008268|gb|ACJ15650.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
Length = 648
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 143/468 (30%), Positives = 234/468 (50%), Gaps = 36/468 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD +D +D
Sbjct: 188 ITGLGGFREVGRSALLVQTNESYVLVDFGVNIAALRDPKKAFPHFDAPEFRYVLDAGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ +++ + L+
Sbjct: 248 AIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDFIEIQQMNGVEPLYRP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + ++ ++ + AGH+LG+++ + I + TGD+
Sbjct: 308 RDIKEVIKHTITLDYGEVRDIAPDMRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKF 367
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTY-GVQLHQ-PRNIREKRFTDVIHSTISQGGRVLI 250
R A P+ + ++ESTY G HQ PR EKR +VIH TI + G+VLI
Sbjct: 368 IPTRLFEPAVSRFPRL--ETLVMESTYGGSNDHQMPREEAEKRLIEVIHQTIRRKGKVLI 425
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PA A+GRAQE++++L+EY +PIY + + A++ Y ++ +R Q
Sbjct: 426 PAMAVGRAQEIMMVLEEYARVG--GIEVPIYLDG-MIWEATAIHTAYPEYLSRHLREQIF 482
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ NPF FK ++ D D G P++++A+ G L G S + F D KN+
Sbjct: 483 HEGYNPFLNPIFKPVANSRERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSM 542
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLT--APLNMQVHYI-SFSAHADYAQTSTFLK 419
+ Y EGTL + + +E+ L+ G T +NM+VH I FS HAD + +++
Sbjct: 543 IFVSYQAEGTLGRQVQRGLREIPLVGEGGKTEVVKVNMEVHTIDGFSGHADRRELISYIA 602
Query: 420 EL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
L P II VHGE H+ L T + + +T+ P N ++ +
Sbjct: 603 RLRPRPERIITVHGEPHKCLDLSTSIHKKFG-ISTR--APNNLDAIRL 647
>gi|408382616|ref|ZP_11180159.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
gi|407814692|gb|EKF85316.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
Length = 634
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 137/471 (29%), Positives = 244/471 (51%), Gaps = 29/471 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD--EID 72
PV+ E + + +T LG EVGRS ++M IL DCG++ A S ++ PY + E
Sbjct: 171 PVTMENEWVRLTALGGFREVGRSSLFMQTSNSKILMDCGVNVAGSDDKSSYPYLNVPEFV 230
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+D ++I+H HLDH+ LPY ++G V+ T T+ + LL D++ ++
Sbjct: 231 LDDLDAVIISHAHLDHSGFLPYLFH-YGYEGPVYCTTPTRDLMTLLQLDHIDIAHREDSP 289
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYT 189
+ F+ + + +S+ LD+ + ++ I+ + AGH+LG+A+ + I + +YT
Sbjct: 290 LPFNVKHVKKSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNFVYT 349
Query: 190 GDYSREEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQG 245
GD+ E R L A + P+ ++ESTYG + RN EK I+ T+ +
Sbjct: 350 GDFKYERSRLLEPAVSKFPRIES--MVMESTYGGHEDVQPTRNDAEKELIKTIYHTLERK 407
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G++LIP FA+GRAQEL+++LDEY H +PIY + + A++ +++ +
Sbjct: 408 GKILIPVFAVGRAQELMIVLDEYI-RHGIIDEVPIYIDG-MIWEATAIHTARPEYLSKDL 465
Query: 306 RNQF--ANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDK 360
R+Q NPF + +N++++ D+ PS+++++ G L G S + F C D+
Sbjct: 466 RDQIFHMGRNPFISEVFHKVNNVEERKDIVEGEPSIILSTSGMLTGGNSVEYFKWLCEDE 525
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLM-NGLTA--PLNMQVHYIS-FSAHADYAQTST 416
+++ V GY EG+L + + KE+ L G T + M + I FS H+D Q
Sbjct: 526 RSSLVFVGYQAEGSLGRRLQKGWKEIPLKEEGKTNVYHVKMGIKTIEGFSGHSDRRQLMD 585
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++ + P I++ HG++++ L + + TK TP N ++V +
Sbjct: 586 YVRRISPKPEKILICHGDNYKTLDLASSIYRSYK-IETK--TPMNLETVRI 633
>gi|384430336|ref|YP_005639696.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
gi|333965804|gb|AEG32569.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
Length = 431
Score = 192 bits (487), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/419 (30%), Positives = 204/419 (48%), Gaps = 29/419 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY-SREEDRHLRAAE 204
+ L++ + + + + AGH+ G+A + G ++Y+GD +RE+D
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKD------V 170
Query: 205 LPQFSP----DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
LP SP D+ + E TYG + H+P + F +++ T+SQGG+V IP FA+ RAQE
Sbjct: 171 LPDPSPPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVFIPTFAVERAQE 230
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKH 319
+L +L Y H PIY SP+A + +A+Y + +E ++ F NPF+
Sbjct: 231 VLYVL--YTHGH-RLPRAPIYLDSPMAGRVLALYPRLVRYFSEEVQAHFLRGKNPFRPAG 287
Query: 320 ISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
+ + + + GP VV+A G L G SD +NA V GY G L
Sbjct: 288 LEVVEHTEASKALNRAPGPMVVLAGSGMLTGGRILHHLKHGLSDPRNALVFVGYQPRGGL 347
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
II+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 348 GAEIIARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|386359601|ref|YP_006057846.1| beta-lactamase fold exonuclease [Thermus thermophilus JL-18]
gi|383508628|gb|AFH38060.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus thermophilus JL-18]
Length = 431
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 206/421 (48%), Gaps = 33/421 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV SC + + +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSCHLLLAGSRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFSPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY-SREEDRHLRAAE 204
+ L++ + + + + AGH+ G+A + G ++Y+GD +R +D
Sbjct: 117 HLRPLEYGEWLRLGALSLTFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNRGKD------V 170
Query: 205 LPQFSP----DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
LP SP D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE
Sbjct: 171 LPNPSPPPLADLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQE 230
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK--- 316
+L +L Y H PIY SP+A + +++Y + +E ++ F NPF+
Sbjct: 231 ILYVL--YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAG 287
Query: 317 ---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
+H +++ + GP VV+A G L G SD +NA V GY G
Sbjct: 288 LEVVEHAEASKALN--REPGPMVVLAGSGMLTGGRILHHLKHGLSDPRNALVFVGYQPRG 345
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGE 432
L II+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 346 GLGAEIIARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGE 402
Query: 433 S 433
Sbjct: 403 E 403
>gi|333897915|ref|YP_004471789.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113180|gb|AEF18117.1| beta-lactamase domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 820
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 146/506 (28%), Positives = 244/506 (48%), Gaps = 27/506 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC ++ GK IL DCGI A SG LP F I + +DV+LI+H H+DH
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMA-SGKDNLPDFQLIQENGGVDVILISHAHMDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP L + +++MTHA K + ++LL D +K+ + E + E + +++I
Sbjct: 66 IGALP-ILSRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEREAEIPAYAEIHVKEMLNRII 124
Query: 149 VLDFHQTVEV---NGIKFWCYTAGHVLGAA-MFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
T + +K Y+AGH+ GAA ++V G Y+GD+SR + A
Sbjct: 125 CHTPGHTFSPFLDSDLKVTFYSAGHIAGAASTYIVGNEG-SFFYSGDFSRFRQNTIEGAS 183
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
+P+ PD+ ESTYG +LH R + E R + I I GG+VLIPAFALGRAQE++LI
Sbjct: 184 IPKLRPDVAFFESTYGDKLHANRELEESRLVEKIGYVIKNGGKVLIPAFALGRAQEIILI 243
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKFKHISPL 323
L + + + Y + K +Y+ + E + + F F +I P+
Sbjct: 244 LKKAINKGMIETKV---YVDGMVKDICRIYKLNPNYLRESLAKKIFKGGEIFFDDNIMPV 300
Query: 324 NSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT-----LA 376
+ + ++ P V+++S G L G S+ + D+KN I GY E + L
Sbjct: 301 DKSEMREEIIKEPCVIVSSSGMLTGGPSQWYAEKLAGDEKNLIAITGYQDEESPGRKLLE 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
T + + + P+ V SAHAD ++ + L P + L+HG+ +
Sbjct: 361 LTDEKDDDKKLKLADKEIPIKCAVDKFGLSAHADMSEILSLANILHPKKVFLIHGDPDTI 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496
L ++ D NT + P+N ++ + + K + R + +GET++ ++
Sbjct: 421 NFLGKEIQK---DINTDVYVPQNGDVYDIDIQNPR--KQLKREPYPSMNMGETLNEGNIE 475
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQ 522
K + + + D++ + LS +I +
Sbjct: 476 KLWRFVL---DEIGTDAALSVEDIAE 498
>gi|255311752|pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311753|pdb|3A4Y|B Chain B, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311754|pdb|3A4Y|C Chain C, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311755|pdb|3A4Y|D Chain D, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAA 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|255311946|pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311947|pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311948|pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311949|pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS A + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGAAGQDELLDWLQG--EPRVVLVHGEE 403
>gi|333988300|ref|YP_004520907.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. SWAN-1]
gi|333826444|gb|AEG19106.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
SWAN-1]
Length = 634
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 138/474 (29%), Positives = 246/474 (51%), Gaps = 31/474 (6%)
Query: 13 RDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD-- 69
R+ P E +L T LG EVGRS +++ IL DCG++ A + ++ PY +
Sbjct: 170 REMPSENEWTRL--TSLGGFREVGRSSLFLQTTNSKILLDCGVNVAGTDDKSSYPYLNVP 227
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
E +D ++I+H HLDH+ LPY L ++G V+ T T+ + LL D++ ++
Sbjct: 228 EFVLDDLDAVVISHAHLDHSGFLPY-LYHYGYEGPVYCTTPTRDLMTLLQLDHIDIAHRE 286
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--V 186
+ + F+ + + +S+ LD+ + ++ I+ + AGH+LG+A+ + I +
Sbjct: 287 DKPLPFNIKHVKKSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNF 346
Query: 187 LYTGDYSREEDRHLR--AAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTI 242
+YTGD+ E R L A+ P+ ++ESTYG + RN EK I+ T+
Sbjct: 347 VYTGDFKFERSRLLEPAVAKFPRIES--MVMESTYGGHEDVQPTRNDAEKELIKTIYQTL 404
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
+GG+VLIP FA+GRAQE++++L+EY H +P+Y + + A++ ++
Sbjct: 405 QRGGKVLIPVFAVGRAQEIMIVLEEYI-RHGIIEEVPVYIDG-MIWEATAIHTARPEYLS 462
Query: 303 ERIRNQF--ANSNPF---KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+ +R+Q NPF F ++ N+ + + PS+++++ G L G S F C
Sbjct: 463 KDLRDQIFHMGKNPFISDVFHKVNGGNNRQEIIEGEPSIILSTSGMLTGGNSVDYFKWLC 522
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLM-NGLTAPLN--MQVHYI-SFSAHADYAQ 413
D+KN+ + GY EG+L + + KE+ L +G T N MQ+ + FS H+D Q
Sbjct: 523 EDEKNSIIFVGYQSEGSLGRRLQKGWKEIPLKEDGKTNVYNVKMQIKTVQGFSGHSDRRQ 582
Query: 414 TSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+++ L P I++ HG++++ L + + + TK TP N +++ +
Sbjct: 583 LMDYIRRLSPKPEKIMICHGDNYKTLDLASSIYRQYK-IETK--TPMNLETIRI 633
>gi|312792978|ref|YP_004025901.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180118|gb|ADQ40288.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 822
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 132/453 (29%), Positives = 216/453 (47%), Gaps = 31/453 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + K IL D GI + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKACNKNILIDSGIRMKEDKLPNLQLLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSM 144
LDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++ +
Sbjct: 61 LDHIGSLP-LIAREYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDLL 119
Query: 145 DKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+ F+ T E + GIK + AGH+LGA+M + +LYTGD+S + + A
Sbjct: 120 DRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIQTQEGSILYTGDFSADRQLTVDKA 179
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+P+ PD+ I ESTYG +LH R+ E+R + + +SQGG+VLIPAFA+GRAQE++L
Sbjct: 180 SVPKIRPDVVICESTYGDRLHTNRSFEEERLFNTVAEVVSQGGKVLIPAFAIGRAQEIIL 239
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPL 323
IL Y N+ + + ++ + VY+ ++ R + K + I
Sbjct: 240 ILRNYMKKRKVSFNV---FIDGMVREVIRVYRNNPTYLSSRYYKRV-----LKGEEIFLA 291
Query: 324 NSIDDFSD----------VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
++I+ SD P V+++S G L G S + + I GY E
Sbjct: 292 DNINVVSDKKQREEIVSSSDPCVIISSSGMLTGGPSVFYAEKIVQSQNALIAITGYQDEE 351
Query: 374 TLAKTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
+ ++ E + +NG + +V SAH+D + FL L P +I
Sbjct: 352 APGRKLLELAELPENERKIELNGKEYEVKCRVEKYGLSAHSDRDRILGFLATLKPRTVIF 411
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
HG + ++ + EL II P+N +
Sbjct: 412 AHGSEDAISQISDMAVKELG---ANIIVPQNGE 441
>gi|389860541|ref|YP_006362780.1| beta-lactamase [Thermogladius cellulolyticus 1633]
gi|388525444|gb|AFK50642.1| beta-lactamase domain protein [Thermogladius cellulolyticus 1633]
Length = 653
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/428 (31%), Positives = 222/428 (51%), Gaps = 28/428 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA--YSGMAALPY--FDEIDPSAIDVLLI 81
+T LG EVGRS + + K +L D GI+ + + A P D I +D +++
Sbjct: 190 VTALGGFMEVGRSAILVETKESRVLLDLGINVGAIHDPLKAYPEIDLDAIRVDELDAVIV 249
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P L K ++G +MT T+ + +++ D ++V++ D+ F E+D++
Sbjct: 250 THSHLDHVGVVP-LLYKYGYRGPTYMTKPTRELSAIMIQDLIQVARREGRDIPFGEKDLS 308
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDR 198
+ +++ + +V IK Y AGH+LG+A+ + I G+ ++YTGD+ R
Sbjct: 309 TMILHTIPVEYDEVTDVAPDIKLTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYSSTR 368
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ + IIESTYG Q R E++ D++ TI + G VLIP FA+G
Sbjct: 369 LLDKAVSEFPRV--ETLIIESTYGATKQQSRQAAEQQLVDIVKRTIERRGVVLIPVFAVG 426
Query: 257 RAQELLLILDEYWSNHPEFHNIPIY--YASPLAKKCMAVYQTYILSMNERIRNQ-FANSN 313
R QE++++L+E E IP Y L + A++ Y M++ +R+ + N
Sbjct: 427 RGQEIMVVLNEAI----EKKLIPPVNIYIEGLINEVTAIHTEYPEYMSKSLRDAIYRGEN 482
Query: 314 PFKFKHISPLN---SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF +H + D + PS++MA+ G L G + + SD++++ + GY
Sbjct: 483 PFTSEHFKIIEGDVGRPDIVEDRPSIIMATSGMLTGGPAVDYLRLIASDERSSLIFVGYQ 542
Query: 371 VEGTLAKTIISEPKEVT-LMNGLTAPL--NMQVHYI-SFSAHADYAQTSTFLKELMPP-- 424
EGTL + I +E+T ++ G L N++VH I FS H+D + ++ + P
Sbjct: 543 AEGTLGRKIKDGMREITNVVEGKVEVLKINLEVHSIDGFSGHSDQTELVRYVLNIKPKPR 602
Query: 425 NIILVHGE 432
NIIL HGE
Sbjct: 603 NIILNHGE 610
>gi|384440508|ref|YP_005655232.1| Ribonuclease [Thermus sp. CCB_US3_UF1]
gi|359291641|gb|AEV17158.1| Ribonuclease [Thermus sp. CCB_US3_UF1]
Length = 431
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 211/427 (49%), Gaps = 21/427 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVLLITHF 84
I P GA EV SC + +G+ +L DCG+ G P+ PS + ++++H
Sbjct: 3 IVPFGAAREVTGSCHLLLAEGRQVLLDCGMFQGREEGKNQEPF--GFQPSRLAAVVLSHA 60
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH LP + ++G V+ T AT + +++L D +KV +E+ FDE+D+
Sbjct: 61 HLDHVGRLPKLF-REGYRGPVYATRATALLMRIVLEDALKV----MEEPFFDEEDLETLF 115
Query: 145 DKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
++ L++ + + + + AGH+ G+A +V G ++Y+GD + + L
Sbjct: 116 RHLKPLEYGEWLRLGDLTLSLGQAGHLPGSAFVVVHGEGKTLVYSGDLGNRQKQVLPDPS 175
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
LP + D+ + E TYG + H+P F ++ T++QGG+ IP FA+ RAQE+L +
Sbjct: 176 LPPKA-DLVLSEGTYGDRPHRPFPETVAEFLGILGHTLAQGGKAFIPTFAVERAQEILYV 234
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPL 323
L ++ P PIY SP+A++ + +Y + +E ++ F NPF+ + +
Sbjct: 235 LYQHGHRLP---RAPIYLDSPMAERVLELYPHLVRYFSEEVQLYFLQGKNPFRPPGLQVV 291
Query: 324 NSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
S + + GP VV+A G L G +D KNA + GY G L I
Sbjct: 292 ESAEVSRALTREEGPMVVLAGSGMLTGGRILHHLKHGLADPKNALIFVGYQPRGGLGAEI 351
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
I+ P+ V L+ G PL VH + FS HA + +L+ P ++LVHGE ++
Sbjct: 352 IARPERVRLL-GQEVPLRASVHTLGGFSGHAGQDELLAWLEG--QPRVVLVHGEEEKLQG 408
Query: 439 LKTKLMT 445
L L +
Sbjct: 409 LGALLAS 415
>gi|296109857|ref|YP_003616806.1| KH-domain/beta-lactamase-domain protein [methanocaldococcus
infernus ME]
gi|295434671|gb|ADG13842.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
infernus ME]
Length = 631
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 138/440 (31%), Positives = 224/440 (50%), Gaps = 30/440 (6%)
Query: 17 VSREGDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDP 73
V ++GD I ++ LG EVGRSC+ + +L DCG++ AY P FD E
Sbjct: 169 VIQKGDYWIRVSFLGGAREVGRSCLLLQTPDTKVLLDCGVNIAYE-EKMYPQFDAPEFSI 227
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
+D ++ITH HLDH LP + + G V+ T T+ + LL DY+ +++ + +
Sbjct: 228 EDLDAVIITHAHLDHCGFLPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLDIAEKEGKPV 286
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTG 190
F ++I + + LD+ T +++ IK + AGHVLG+A+ + + YTG
Sbjct: 287 PFSSKEIKECVKHVIPLDYGVTTDISPSIKLTLHNAGHVLGSAIAHLHFGEGLYNLAYTG 346
Query: 191 DYSREEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGG 246
D + R L A + P+ + IIESTYG + R EK ++ I +GG
Sbjct: 347 DLKFDTSRLLEPAVCQFPRL--EALIIESTYGGYDDVLPDRAEAEKELLRIVIEHIEKGG 404
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
++LIP F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +R
Sbjct: 405 KILIPVFGVGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKDMR 461
Query: 307 NQF--ANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ NPF + + +D D P V++A+ G L G S + F D+
Sbjct: 462 RKIFQEGDNPFLSDVFQRVRNTNDRRRIIDDSEPCVILATSGMLTGGPSLEYFKNLAPDE 521
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTS 415
KNA + GY EGTL + + KE+ ++ NG T P+NM V+ + FS H+D Q
Sbjct: 522 KNAIIFVGYQAEGTLGRKVQKGWKEIPIVTKNGKTKSIPINMGVYTVEGFSGHSDRKQLI 581
Query: 416 TFLKELMPP--NIILVHGES 433
+++++ P II+VHGE
Sbjct: 582 RYVRKVKPSPEKIIMVHGEE 601
>gi|255311954|pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311955|pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311956|pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311957|pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LV GE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVVGEE 403
>gi|302348117|ref|YP_003815755.1| exonuclease [Acidilobus saccharovorans 345-15]
gi|302328529|gb|ADL18724.1| Putative exonuclease [Acidilobus saccharovorans 345-15]
Length = 674
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 137/474 (28%), Positives = 241/474 (50%), Gaps = 30/474 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
IT LG+ EVGRSC+ + IL D G + G A P FD E+ +D ++I+H
Sbjct: 197 ITGLGSFGEVGRSCILIDTSESKILLDVGFAQSGFGPDAYPMFDAPELRLDELDAVVISH 256
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
H+DH P L K ++G ++MT AT+ I L+L D++ + ++ + ++D+
Sbjct: 257 AHMDHVGLAP-MLYKYGYRGPIYMTPATRDIATLMLQDFINLYIREGKEPPYTQKDLITM 315
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGD---YSREED 197
++ +++ +++ K AGH+LG+A+ + I +LYTGD YS ++
Sbjct: 316 LNHTITVNYDVVTDLSPDAKLTFSDAGHILGSALVHIHIGQGLYNILYTGDLKYYSVRDN 375
Query: 198 RHLR---AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
+ LR A + I+ESTYG R E++ D+I+ T +GG+VL+P A
Sbjct: 376 KALRLQPPANTEFHRIETLIMESTYGATETPTREEAEQQLMDLINRTYKRGGKVLLPVMA 435
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--S 312
+GR+Q+++++L++ + +PIY L + A+Y Y +++ IR+Q N +
Sbjct: 436 VGRSQDMMVLLNKAMQEK-KIPEMPIYIDG-LIYEVTAIYTAYPELLSKEIRDQILNEGA 493
Query: 313 NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
NPF + +N + GP++++++ G + G + F D+KN+ V
Sbjct: 494 NPFIGPQMVFVNDQSKRDEAIYSQGPAIIISTSGMMTGGPILEYFKALAGDQKNSLVFVS 553
Query: 369 YVVEGTLAKTIISEPKEVTL--MNGL-TAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP 424
Y GTL + I+ +EV L N L T +N++V I FS HA+ ++ FL+ L P
Sbjct: 554 YQAAGTLGRRIVEGEREVQLEDENRLKTYKVNLEVARIEGFSGHANRSELLAFLRRLAPK 613
Query: 425 --NIILVHGESHEMGRLKTKLMTELA----DCNTKIITPKNCQSVEMYFNSEKM 472
IIL HGE + L + + D + +++ P+N +++ +Y S K+
Sbjct: 614 PRTIILNHGEPAGLSALASTIKGRWDKLGFDASPEVVVPENLETIRVYPRSSKL 667
>gi|344996811|ref|YP_004799154.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965030|gb|AEM74177.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 822
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 216/453 (47%), Gaps = 31/453 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG EVG SCV + K IL D G+ + L E+ +DV LI+H H
Sbjct: 3 IVFLGGAKEVGASCVLIKACNKNILIDSGMRMKEDKLPNLQLLREL--GGVDVCLISHAH 60
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSM 144
LDH SLP + + + TK + K+LL D +++ +++ +++ ++ E+++ +
Sbjct: 61 LDHIGSLP-LIAREYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPIYAEKNVEDLL 119
Query: 145 DKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
D+ F+ T E + GIK + AGH+LGA+M + +LYTGD+S + + A
Sbjct: 120 DRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIKTQEGSILYTGDFSADRQLTVDKA 179
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+P+ PD+ I ESTYG +LH R+ E+R + + +SQGG+VLIPAFA+GRAQE++L
Sbjct: 180 SVPKIRPDVVICESTYGDRLHTNRSFEEERLFNTVAEVVSQGGKVLIPAFAIGRAQEIIL 239
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPL 323
IL Y N+ + + ++ + VY+ ++ R + K + I
Sbjct: 240 ILRNYMKKRKVSFNV---FIDGMVREVIRVYRNNPTYLSSRYYKRV-----LKGEEIFLA 291
Query: 324 NSIDDFSD----------VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
++I+ SD P V+++S G L G S + + I GY E
Sbjct: 292 DNINVVSDKKQREEIVSSSDPCVIISSSGMLTGGPSVFYAEKIVQSQNALIAITGYQDEE 351
Query: 374 TLAKTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
+ ++ E + +NG + +V SAH+D + FL L P +I
Sbjct: 352 APGRKLLELAELPENERKIELNGKEYEVKCRVEKYGLSAHSDRDRILGFLATLKPRTVIF 411
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
HG + ++ + EL II P+N +
Sbjct: 412 AHGSEDAISQISDMAVKEL---EANIIVPQNGE 441
>gi|297619493|ref|YP_003707598.1| beta-lactamase domain-containing protein [Methanococcus voltae A3]
gi|297378470|gb|ADI36625.1| beta-lactamase domain protein [Methanococcus voltae A3]
Length = 422
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 219/415 (52%), Gaps = 37/415 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G+SCV + K IL DCG+ P+ + A+P ++D S ID ++++H HLDH
Sbjct: 8 GGCHQIGKSCVEIETKKSRILVDCGMDPSNN---AIP---DVDASKIDAVVVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P+F FK ++ T + + D V +SK + E+DI RSM I +
Sbjct: 62 GAVPHF----DFK-NIYCNAPTADLMYNVWKDTVNLSKS------YKEEDIQRSMKNINI 110
Query: 150 LDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L + + ++ I Y AGH+LG++ +DI G ++LYTGD + E R L A+
Sbjct: 111 LGYREPKKITSDISMKFYDAGHILGSSSVYLDIDGKKLLYTGDINEIETRTLNPADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D IIESTYG + + R + EK+ D I TI + G+V+IP FA+GRAQE+++I++
Sbjct: 171 EIDTIIIESTYGSPLDVKPSRKVLEKQLIDEISETIEENGKVIIPVFAVGRAQEIIVIIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN-SNPFKFKHISPLNS 325
Y + +P+Y L +Y +Y +N +I N N +NPF L
Sbjct: 231 NYIRSG-LLKKVPVYVCGSLT-HTTGMYMSYSEWLNPKINNLMNNGTNPF-----GNLLK 283
Query: 326 IDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP 383
DD F++ P +++++ G +Q G Q + + KN ++ GY EGT+ +++
Sbjct: 284 ADDNIFNNNEPCIIISTSGMVQGGPVLQYLSL-LKNPKNKLILTGYQGEGTIGRSLEEGA 342
Query: 384 KEVTLMNGLTAPLNM--QVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
E+T P+ + ++ I FSAH DY +LK++ P I++HGE ++
Sbjct: 343 TEIT---PFKKPIQIKGKITKIEFSAHGDYNSLVRYLKKIPEPKKAIVMHGERYQ 394
>gi|288930974|ref|YP_003435034.1| RNA-metabolising metallo-beta-lactamase [Ferroglobus placidus DSM
10642]
gi|288893222|gb|ADC64759.1| RNA-metabolising metallo-beta-lactamase [Ferroglobus placidus DSM
10642]
Length = 617
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 130/430 (30%), Positives = 212/430 (49%), Gaps = 26/430 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA---LPYFDEIDPSAIDVLLITHFH 85
LGA EV S + IL DCG+ + +P+ DPS ID ++++H H
Sbjct: 7 LGACREVTGSMHLLDTGKTKILLDCGMRQGVDSVEREKHIPF----DPSEIDYIILSHAH 62
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFDEQDIN 141
+DH+ +PY + F+GRV T AT+AI +LLL D K+ K E LFDE+D+
Sbjct: 63 IDHSGLIPYLYLRG-FRGRVVTTTATRAIAELLLLDSAKIMKEEYEKSNIPPLFDERDVV 121
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M + +++ V + +K AGH+LG+A+ ++ I G+++ YTGD +
Sbjct: 122 EVMSHFDAYPYNKPVRLQDVKLSFLDAGHILGSAVTLLRINGLQICYTGDIGSGTSPLMN 181
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
P+ D+ I+ESTYG + H+ R + VI TI GG+VLIP FA+GRAQE+
Sbjct: 182 PPTPPK-EADVLIMESTYGNRRHEDRAKAVETMKAVISDTIKAGGKVLIPVFAVGRAQEV 240
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHI 320
L +L N + + +Y +PL + +Y++Y + + F NP +F+ +
Sbjct: 241 LYVL----RNLRDKIRVKVYLDTPLGSRVTDIYKSYSNMLRKEFYELFLRGKNPIEFEGL 296
Query: 321 SPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
+ + + ++ P +++++ G L+ G D+ + + GY EGTL
Sbjct: 297 EYVTTYNRSRELAKSNEPCIILSASGMLEGGRVLNHLPYILQDENSTVLFVGYQAEGTLG 356
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLK--ELMPPNIILVHGES 433
+ I+ K + +NG + V +S FSAHAD F++ + P I +VHGE
Sbjct: 357 RQIVDGNK-LVYVNGDEVDVRCNVVNVSAFSAHADEDGLVGFVEGMDYYPRRIYIVHGEE 415
Query: 434 HEMGRLKTKL 443
L +L
Sbjct: 416 EAARNLLARL 425
>gi|222445335|ref|ZP_03607850.1| hypothetical protein METSMIALI_00963 [Methanobrevibacter smithii
DSM 2375]
gi|261350104|ref|ZP_05975521.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
gi|222434900|gb|EEE42065.1| arCOG00543 universal archaeal KH-domain/beta-lactamase-domain
protein [Methanobrevibacter smithii DSM 2375]
gi|288860890|gb|EFC93188.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
Length = 636
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 133/465 (28%), Positives = 234/465 (50%), Gaps = 26/465 (5%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDV 78
D +T +G EVGRS + + +L DCG++ A S A PY + E +D
Sbjct: 178 DWARVTSMGGFKEVGRSSMLLQTPNSRVLLDCGVNVAASDNKNAFPYLNVPEFSIEELDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+H HLDH +PY L ++G ++ T T+ + LL D++ ++ + F+ +
Sbjct: 238 VIISHAHLDHCGFVPY-LYHYGYEGPIYCTTPTRDLTTLLQLDHLDIAHREGNPLPFNVK 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA--GVRVLYTGDYSRE 195
+ +++ LD+ + +++ I+ + AGH+LG+A+ + I ++YTGD+ E
Sbjct: 297 HVQKAIKHTITLDYGEVTDISPDIRLTLHNAGHILGSAISHMHIGDGAHNLVYTGDFKYE 356
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R L A + I+ESTYG + + RN EK I+ T+ +GG+VL+P F
Sbjct: 357 RSRLLEPATFRFPRAETVIMESTYGGREDIQPSRNSAEKEMMKTIYKTLKRGGKVLVPVF 416
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GRAQEL+++L+EY H +PIY + + A++ +++ +R+Q
Sbjct: 417 AVGRAQELMVVLEEYM-RHGMIDEVPIYIDG-MIWEATAIHTARPEYLSKDLRDQIFHMG 474
Query: 312 SNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF + + ++D D+ P++++++ G L G S + F C D +N +
Sbjct: 475 RNPFISDMFNKVQNLDQRKDIVESNSPAIILSTSGMLTGGNSVEYFKWLCEDDRNTLIFV 534
Query: 368 GYVVEGTLAKTIISEPKEVTL-MNGLTAPLN--MQVHYIS-FSAHADYAQTSTFLKEL-- 421
GY EG+L + I KEV L + T N M++ I+ FS H++ Q ++K L
Sbjct: 535 GYQSEGSLGRRIQKGWKEVPLEEDNKTKVFNVKMEIKTINGFSGHSNRRQLMDYVKRLNP 594
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
P +I HG+ ++ L + + TK +P N SV ++
Sbjct: 595 RPDKVITCHGDPYKTTDLASSIHRSYK-IETK--SPVNLDSVRIH 636
>gi|148643098|ref|YP_001273611.1| metal-dependent RNase [Methanobrevibacter smithii ATCC 35061]
gi|148552115|gb|ABQ87243.1| predicted metal-dependent RNase [Methanobrevibacter smithii ATCC
35061]
Length = 636
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 133/465 (28%), Positives = 234/465 (50%), Gaps = 26/465 (5%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFD--EIDPSAIDV 78
D +T +G EVGRS + + +L DCG++ A S A PY + E +D
Sbjct: 178 DWARVTSMGGFKEVGRSSMLLQTPNSRVLLDCGVNVAASDNKNAFPYLNVPEFSIEELDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++I+H HLDH +PY L ++G ++ T T+ + LL D++ ++ + F+ +
Sbjct: 238 VIISHAHLDHCGFVPY-LYHYGYEGPIYCTTPTRDLTTLLQLDHLDIAHREGNPLPFNVK 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA--GVRVLYTGDYSRE 195
+ +++ LD+ + +++ I+ + AGH+LG+A+ + I ++YTGD+ E
Sbjct: 297 HVQKAIKHTITLDYGEVTDISPDIRLTLHNAGHILGSAISHMHIGDGAHNLVYTGDFKYE 356
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R L A + I+ESTYG + + RN EK I+ T+ +GG+VL+P F
Sbjct: 357 RSRLLEPATFRFPRAETVIMESTYGGREDIQPSRNSAEKEMMKTIYKTLKRGGKVLVPVF 416
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GRAQEL+++L+EY H +PIY + + A++ +++ +R+Q
Sbjct: 417 AVGRAQELMVVLEEYM-RHGMIDEVPIYIDG-MIWEATAIHTARPEYLSKDLRDQIFHMG 474
Query: 312 SNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF + + ++D D+ P++++++ G L G S + F C D +N +
Sbjct: 475 RNPFISDMFNKVQNLDQRKDIVESNSPAIILSTSGMLTRGNSVEYFKWLCEDDRNTLIFV 534
Query: 368 GYVVEGTLAKTIISEPKEVTL-MNGLTAPLN--MQVHYIS-FSAHADYAQTSTFLKEL-- 421
GY EG+L + I KEV L + T N M++ I+ FS H++ Q ++K L
Sbjct: 535 GYQSEGSLGRRIQKGWKEVPLEEDNKTKVFNVKMEIKTINGFSGHSNRRQLMDYVKRLNP 594
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
P +I HG+ ++ L + + TK +P N SV ++
Sbjct: 595 RPDKVITCHGDPYKTTDLASSIHRSYK-IETK--SPVNLDSVRIH 636
>gi|145590331|ref|YP_001152333.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
DSM 13514]
gi|145282099|gb|ABP49681.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 635
Score = 188 bits (478), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 142/455 (31%), Positives = 226/455 (49%), Gaps = 34/455 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + +T LGA EVGRS + +S +L DCG+ P+ P D +D
Sbjct: 168 PVLKEG-PITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYD-EDFPMLDLVDIDR 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K +KG V+MT TK +LLTDYV++ + F
Sbjct: 226 LDAVVLTHAHMDHVGCLP-FLFKYGYKGPVYMTDPTKYQAFILLTDYVELKEREGLQPSF 284
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
+ D+ + LD+ + ++ IK Y AGH +G+AM + I R +LYTGD+
Sbjct: 285 SKADVEAVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 344
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR+ E I T+S+GG+VLI
Sbjct: 345 KYGKTRLLNRAVSKFKRVEMLIMESTYGGKDDVQPPRHEAENALAKHISETVSKGGKVLI 404
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L IL++ +PI Y + + + VY Y +N + + +
Sbjct: 405 PAFSTGRGQEILYILNKMMDGGL-VPRVPI-YVDGMIVETLNVYLMYPHYLNPEVAEEIY 462
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
NPF + K + + I+ + + P++++A G L G F
Sbjct: 463 GGVNPFTTSGNVVIVDRAKRVE--DRINQVAKIAQSEEPAIIIAPHGMLNGGPVLDYFAQ 520
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKE--VTLMNGLTAPLNMQVHYIS---FSAHAD 410
D KN V Y EGT+ + I++ +E V + G + +NM++ +S FS H+D
Sbjct: 521 LAPDDKNKLVFVSYQAEGTIGRRILNGEREFVVRSLVGGESKINMRMEVVSIPGFSGHSD 580
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKL 443
+ +++ E P I L+HGE ++ L T +
Sbjct: 581 RRELMKYVEHIEPKPKKIALIHGEPSKIISLATSI 615
>gi|387927741|ref|ZP_10130420.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
gi|387589885|gb|EIJ82205.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
Length = 907
Score = 188 bits (477), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 148/471 (31%), Positives = 232/471 (49%), Gaps = 39/471 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
++ LG G+EVG SC++++ IL D G+ G LP +D DV+L+TH
Sbjct: 3 VSILGGGSEVGASCLHINMADTNILVDAGMR--MHGEELLPALGMLDTLRKPDVILVTHA 60
Query: 85 HLDHAASLPYFLEKTTFKG-RVFMTHATKAIYKLLLTDYVKV----SKVSVEDMLFDEQD 139
H DH +LP + + F ++ T T + K+++ D +K+ S+ + + + E+
Sbjct: 61 HADHIGALP--IVHSLFPDVPMYATPPTADLMKMMMKDSLKILEQRSRETNTLVPYTEEQ 118
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+N ++ + + ++ V +K Y AGH+LGA MF+ + G R+L TGD S + R
Sbjct: 119 VNSLLESLLLFPESGSLRVGNVKITSYRAGHILGAVMFLFEGEGERLLITGDLSFKAGRT 178
Query: 200 LRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
+ A++P PD+ I+ESTYG + H RN E+R + + I+ GG LIPAFALGRA
Sbjct: 179 IPGAQVPHDIQPDVVIMESTYGNRAHTDRNTEERRLAEHVSEVIAGGGFALIPAFALGRA 238
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMN----ERIRNQFANS 312
QE+LLIL +Y EF PI Y L +Y Y + RIR N
Sbjct: 239 QEVLLILQDYMEKGLITEF---PI-YVDGLVTPISRIYNQYPHFLKGPVAHRIRK---NG 291
Query: 313 NPF----KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
+ F + K + P ++ + P ++AS G L G S + SD++NA I G
Sbjct: 292 DVFLTEGRCKAVEP-KERNEVLNGKPGCIVASSGMLTGGASSWYAERLISDERNAIFITG 350
Query: 369 YVVEGTLAKTI--ISEPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
Y E + + + +++ E L +NG + + +V SAHAD + + F++ L P
Sbjct: 351 YQDEESPGRKLLNVADGLENELELNGTSYQVKCRVGKYGLSAHADANEMNRFIQTLNPTY 410
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTI 476
+LVHG+ +L + L D I +N QS E F K K I
Sbjct: 411 TLLVHGDDEARSQLGS-----LIDPRFHPILVENGQSYE--FEKRKSGKGI 454
>gi|381189581|ref|ZP_09897107.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
gi|380452551|gb|EIA40149.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
Length = 431
Score = 187 bits (476), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 129/421 (30%), Positives = 204/421 (48%), Gaps = 33/421 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATALLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY-SREEDRHLRAAE 204
+ L++ + + + + AGH+ G+A + G ++Y+GD +RE+D
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKD------V 170
Query: 205 LPQFSP----DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
LP SP D+ + E TYG + H+P F +++ T+SQGG+V IP FA+ RAQE
Sbjct: 171 LPDPSPPPLADLVLAEGTYGDRPHRPYRETVXEFLEILXXTLSQGGKVXIPTFAVERAQE 230
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK--- 316
+L +L Y H PIY SP+A + +++Y + +E ++ F NPF+
Sbjct: 231 ILYVL--YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAYFLQGKNPFRPAG 287
Query: 317 ---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
+H +++ GP VV+A G L G SD +NA V GY G
Sbjct: 288 LEVVEHXEASKALNRXP--GPMVVLAGSGMLTGGRILHHLKHGLSDPRNALVFVGYQPRG 345
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGE 432
L II+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 346 GLGAEIIARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGE 402
Query: 433 S 433
Sbjct: 403 E 403
>gi|18312205|ref|NP_558872.1| mRNA 3'-end processing factor [Pyrobaculum aerophilum str. IM2]
gi|18159643|gb|AAL63054.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum aerophilum
str. IM2]
Length = 634
Score = 187 bits (476), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 138/455 (30%), Positives = 227/455 (49%), Gaps = 34/455 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + +T LGA EVGRS + +S +L DCG+ PA + P D ID
Sbjct: 167 PVVKEG-PITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPAQND-EEFPLLDLIDIDR 224
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K +KG V+MT TK +LL+DYV++ + +
Sbjct: 225 LDAVVLTHAHMDHVGCLP-FLFKYGYKGPVYMTDPTKYQAFILLSDYVELKEREGLQPSY 283
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
+ DI + LD+ + ++ IK Y AGH +G+AM + I R +LYTGD+
Sbjct: 284 SKADIETVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 343
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR E + +++GG+VLI
Sbjct: 344 KYGKTRLLNRAANKFKRVEMLIMESTYGGRDDVQPPRVEAENALAKHVSDAVTRGGKVLI 403
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L IL++ +P+ Y + + + VY Y +N + + +
Sbjct: 404 PAFSTGRGQEILYILNKMMEGGL-IPRVPV-YVDGMIVETLNVYLMYPHYLNPEVAEEIY 461
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
NPF + K + + I+ + + P+V++A G L G F
Sbjct: 462 GGVNPFTTSGSVVIVDRAKRVE--DRINQVAKIAQSEEPAVIIAPHGMLNGGPVVDYFAQ 519
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTL--MNGLTAPLNMQVHYIS---FSAHAD 410
D++N + Y EGTL + I++ +E + + G + +NM++ +S FS H+D
Sbjct: 520 LAHDERNKLIFVSYQAEGTLGRRILNGEREFVIKSLVGGESKINMRMEVVSIPGFSGHSD 579
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKL 443
+ +++ E P I+L+HGE ++ L T +
Sbjct: 580 RRELMKYVEHMEPKPKKIVLIHGEPSKIISLATSI 614
>gi|402301584|ref|ZP_10820890.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
gi|401723328|gb|EJS96832.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
Length = 907
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 228/443 (51%), Gaps = 41/443 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
I+ LG G+EVG SC+++ IL D G+ G LP ++ +A +V+L+TH
Sbjct: 3 ISILGGGSEVGASCLHIEVADTNILIDAGMR--MHGDEPLPALGMLEGLAAPEVILVTHA 60
Query: 85 HLDHAASLPY---FLEKTTFKGRVFMTHATKAIYKLLLTDYVKV--SKVSVEDML--FDE 137
H DH +LP F T ++ T T + ++++ D K+ + S+ L + E
Sbjct: 61 HADHIGALPIVHSFYPNTP----IYTTPPTADLMRVMMKDSYKILEQRSSLHQTLVPYTE 116
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+ +N +D + +L + +++ +K + AGH+LGA MF+++ G ++ TGD S +
Sbjct: 117 EQVNDLLDSLLLLPANGVLQIGNVKITSFRAGHILGAVMFLIEGGGQKLFVTGDLSFQAG 176
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
R + A +PQ PD+ I+ESTYG + H RN E+R + + + I+ GG LIPAFALG
Sbjct: 177 RTIPGAHVPQDLEPDVVIMESTYGNRTHTDRNTEERRLANDVANIIANGGFALIPAFALG 236
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIY---YASPLAKKCMAVYQTYILSMNE----RIRN 307
RAQE+LL+L +Y PEF PIY +P+++ +Y+ Y + RI+N
Sbjct: 237 RAQEVLLVLQDYMDKGLIPEF---PIYVDGLVTPISR----IYKKYPHFLKGPVAYRIKN 289
Query: 308 QFANSNPF----KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
N + F + K + ++ P ++AS G L G S + S++KNA
Sbjct: 290 ---NGDAFLTDGRCKAVGSSKEREEVLRGKPGCIVASSGMLIGGASSWYAERLVSNEKNA 346
Query: 364 CVIPGYVVEGTLAKTI--ISEPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLKE 420
I GY E + + + ++E E L +NG + + + SAHAD + F+++
Sbjct: 347 IFITGYQDEESPGRKLLQVAEGVENQLELNGTSHEVKCHIGKYGLSAHADANEMKRFIEK 406
Query: 421 LMPPNIILVHGESHEMGRLKTKL 443
L P + +LVHG+ +L ++
Sbjct: 407 LNPTHTLLVHGDDDARNQLGAQI 429
>gi|288931295|ref|YP_003435355.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
gi|288893543|gb|ADC65080.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 132/426 (30%), Positives = 217/426 (50%), Gaps = 21/426 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
IT LG EVGRSC + I+ DCG++ + Y E+ P +ID +++TH
Sbjct: 182 ITFLGGSREVGRSCYLLQTPESKIMIDCGVNVSNLNQTPYLYVPEVTPLDSIDAVVVTHA 241
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH +P L K +KG +++T T+ + LL D++ V+ ++ Q I ++
Sbjct: 242 HLDHCGLIP-ILYKYGYKGPIYLTQPTRDLMVLLQLDFIDVAVKEGGVTPYESQHIREAL 300
Query: 145 DKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLR 201
LD+ ++ ++ Y AGH+LG+A+ F + V +TGD+ E R
Sbjct: 301 KHTITLDYGVVTDIAPDVRLTFYNAGHILGSAIAHFHIGEGLYNVAFTGDFKFERTRLFD 360
Query: 202 AAELPQFSPDICIIESTYG-VQLHQP-RNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
AE + ++E+TYG + QP R E++ +VI+ T+S+GG+VLIPAFA+GR+Q
Sbjct: 361 KAETNFPRLEALVMEATYGGSEDFQPSRKEAEEKLIEVINKTVSRGGKVLIPAFAVGRSQ 420
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF-- 315
E++++L+E + +P+Y + + A++ Y +N +R+ + NPF
Sbjct: 421 EVMIVLEEAIREK-KIPEVPVYLDG-MIYEATAIHTAYPEYLNAHLRDLIFHQGVNPFIS 478
Query: 316 -KFKHISPLNSIDD-FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
F + + D+ +D P+V++A+ G L G + F D+KN V GY EG
Sbjct: 479 ESFVRVDSASKRDEVINDKSPAVIIATSGMLNGGPVMEYFKALAPDEKNTLVFVGYQAEG 538
Query: 374 TLAKTIISEPKEVTL-MNGL--TAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNII 427
TL + I KEV NG +NM+V + FS H+D Q ++K L P ++
Sbjct: 539 TLGRRIQKGWKEVPFPSNGKREVVYVNMEVVTVDGFSGHSDRRQLINYVKSLSSKPEKVL 598
Query: 428 LVHGES 433
VHG+
Sbjct: 599 TVHGDE 604
>gi|392956492|ref|ZP_10322019.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
gi|391877474|gb|EIT86067.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
Length = 896
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 134/436 (30%), Positives = 220/436 (50%), Gaps = 29/436 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI-DVLLITHF 84
IT LG GNE+G SC+++ + I+ D G+ G LP I+ + DV+L+TH
Sbjct: 3 ITVLGGGNEIGASCLHIQLADQVIVIDAGMR--MHGDQLLPSLGLIEELGVPDVILVTHA 60
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML----FDEQDI 140
H DH +LP L ++ T T + +++ D K+ + E + ++ +
Sbjct: 61 HADHIGALP-VLHAMFPHVPMYATPPTIELTTVMMKDSFKIMSMRSEQTHTLPPYTKEQV 119
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
+ +QT+ + +K Y AGH+LGA MF+++ G ++ TGD S + R +
Sbjct: 120 AAVLQAFLPFPANQTLHIGHVKITSYRAGHILGAVMFLIEGDGEKLFVTGDLSFKAGRTI 179
Query: 201 RAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
A +P+ PD+ I+ESTYG + H RN EKR + + +TI+ GG LIPAFALGRAQ
Sbjct: 180 PGAVVPKHIEPDVVIMESTYGNRAHSDRNSEEKRLAEHVAATIAGGGFALIPAFALGRAQ 239
Query: 260 ELLLILDEYWSNH--PEFHNIPIY---YASPLAKKCMAVYQTYILSMNERIRNQ-FANSN 313
E+LLIL +Y P+F PIY +P+++ +Y+ Y + + ++ N +
Sbjct: 240 EVLLILQDYMERGLIPQF---PIYVDGLVTPISR----IYRDYPHYLKGPVAHRIMKNGD 292
Query: 314 PFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F + + S D+ DV P+ ++AS G L G S + S++KNA I GY
Sbjct: 293 AFLTERCRAV-SRDEREDVLNGKPACIVASSGMLTGGASAWYAERLLSNEKNAIFITGYQ 351
Query: 371 VEGTLAKTIISEPKEVTL---MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
E + + +++ + +NG P+ V S HAD + + F++ L P + +
Sbjct: 352 DEESPGRKLLNLADGIEQHIELNGREYPVQCSVTKYGLSGHADAHEMNVFIEALAPTHTL 411
Query: 428 LVHGESHEMGRLKTKL 443
LVHG+ +L +L
Sbjct: 412 LVHGDDTARMQLAERL 427
>gi|150400157|ref|YP_001323924.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150012860|gb|ABR55312.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 433
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 225/437 (51%), Gaps = 30/437 (6%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G EVGRSCV + T+LFDCG+ + G+ P D+++ D + +H HLDH
Sbjct: 7 GGAFEVGRSCVEVKSDKSTVLFDCGVKLSPKGIE-YPILDDLNA---DCVFPSHSHLDHV 62
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
S+P + K ++ T TKAI K LL D +K+S+V ++ +D++D N S+
Sbjct: 63 GSIPVLIRKGMVPA-IYATPITKAITKELLRDSLKISQVEGHELPYDKEDFNTSLSLFRK 121
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL--PQ 207
+++ + +F + AGH+ G++ +++ +++YTGD + ++ A+L +
Sbjct: 122 AGYNKPKKFKDFEFELFNAGHIPGSSTILLNYGSKKIVYTGDVKVNDTELVKGADLSYSK 181
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
+ D IIESTYG + R EK+F + I T+ +GG LIP FA+ R+QE++++L++
Sbjct: 182 ENIDCLIIESTYGGNNQEDRKEAEKKFVEEIKKTVERGGVALIPVFAVDRSQEIIMMLNK 241
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN--ERIRNQFANSNPFKFKHISPLNS 325
Y +F +P+Y+ L +K + Y +N +++ F FK ++P +
Sbjct: 242 Y-----DF-KVPVYFDG-LGRKITRIMLDYPEYLNYPHELKDAF-----FKVIEVNPKDR 289
Query: 326 ---IDDFSDVGPSVVMASPGGLQSG-LSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
I D + G +V+++ G L+ G + +F+ + DKK++ + GY VE T + ++
Sbjct: 290 KQIIKDLKNNG-GIVVSTAGMLEGGPIIPYIFE-FMKDKKSSLIFTGYQVEDTAGRYLLE 347
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
K M L +V FSAH + + +K++ P +I+ HGE+ + K
Sbjct: 348 TGK--VKMGELDVTPEFEVMAFQFSAHGEMGELRHIVKKVNPETLIIQHGEASSLESFKN 405
Query: 442 KLMTELADCNTKIITPK 458
+ E N K+ TPK
Sbjct: 406 WAVLEGFSEN-KVFTPK 421
>gi|451818434|ref|YP_007454635.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784413|gb|AGF55381.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 851
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 129/433 (29%), Positives = 210/433 (48%), Gaps = 18/433 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHFHLD 87
LG EVG S + + K ILFD GI S ++P F +I +D ++I+H HLD
Sbjct: 9 LGGALEVGGSSILIKINNKNILFDAGIRQNAS-KDSMPNFRDIQTYGGLDAIIISHAHLD 67
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRSMDK 146
H LP + K +++M + TK + K+LL D +K+ S E L+ E D+ ++++
Sbjct: 68 HIGCLP-IISKEYPNAKIYMNNMTKDLVKVLLYDSLKIMSNREAEIPLYAEVDVENTLNR 126
Query: 147 IEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
I +++ + + Y AGH+ GA+ + V Y+GD+S R + A+L
Sbjct: 127 IFTINYEVKFPIFEDMHVTFYNAGHIAGASCVYLQSPEGAVFYSGDFSVFSQRTVEGAKL 186
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P+ PD+ I+ESTYG +LH R + E+ + + I G++LIPAFALGRAQE++LIL
Sbjct: 187 PKLRPDVAIVESTYGDRLHSNREVEERNLIEAVKECIENNGKMLIPAFALGRAQEVILIL 246
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI-RNQFANSNPFKFKHISPLN 324
N N+ + Y + + VY L + + + ++PF +I +
Sbjct: 247 KSAM-NKGLIKNVKV-YVDGMVRDINRVYNKNPLFLKNSLGKKILRGASPFYDDNIMEIM 304
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
D+ ++ P ++++S G L G S + + +I GY E + + I+
Sbjct: 305 ITDNREEILNQKEPVIIISSSGMLTGGQSAFYAEKIAPMENGYIIITGYQDEESPGRKIL 364
Query: 381 S-----EPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
E E L +NGL P+ V + SAHAD + L+ + NIILVHG
Sbjct: 365 ELTEADENSERYLNINGLNIPVKCNVRKVGLSAHADKNEIKGVLERISARNIILVHGNEE 424
Query: 435 EMGRLKTKLMTEL 447
+ L ++ E
Sbjct: 425 VIRSLGKEISDEF 437
>gi|47229058|emb|CAG03810.1| unnamed protein product [Tetraodon nigroviridis]
Length = 698
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 157/283 (55%), Gaps = 29/283 (10%)
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GDY+ DRHL AA + + PDI I ESTY + + RE+ F +H TI +GG+VL
Sbjct: 245 GDYNMTPDRHLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETIERGGKVL 304
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRN 307
IP FALGRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR
Sbjct: 305 IPVFALGRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRK 360
Query: 308 QFANSNPFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA--- 363
F N F+FKHI + ++D GP VV A+PG L +G S Q+F W ++KN
Sbjct: 361 TFVQRNMFEFKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVQF 418
Query: 364 -----------------CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFS 406
+PGY V+GT+ I++ +++ + T + +QV Y+SFS
Sbjct: 419 LRRECGRQQKHAALLSWSSMPGYCVQGTIGHKILNGQRKLEMEGRATLDVKLQVEYMSFS 478
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD 449
AHAD ++ P N++LVHGE+ +M LK K+ E ++
Sbjct: 479 AHADAKGIMQLIRMAEPRNMLLVHGEAAKMEFLKGKIEQEFSE 521
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 29/38 (76%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS 60
++ +TPLGAG +VGRSC+ +S GK I+ DCG+H ++
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFN 40
>gi|379005388|ref|YP_005261060.1| universal KH-domain/beta-lactamase-domain protein [Pyrobaculum
oguniense TE7]
gi|375160841|gb|AFA40453.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Pyrobaculum oguniense TE7]
Length = 635
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 140/455 (30%), Positives = 225/455 (49%), Gaps = 34/455 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + + LGA EVGRS + +S +L DCG+ P+ P D +D
Sbjct: 168 PVLKEG-PITVAFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYD-EDFPMLDLVDIDR 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K +KG V+MT TK +LLTDYV++ + F
Sbjct: 226 LDAVVLTHAHMDHVGCLP-FLFKYGYKGPVYMTDPTKYQAFILLTDYVELKEREGLQPSF 284
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
+ D+ + LD+ + ++ IK Y AGH +G+AM + I R +LYTGD+
Sbjct: 285 SKADVEAVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 344
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR+ E I T+S+GG+VLI
Sbjct: 345 KYGKTRLLNRAVSKFKRVEMLIMESTYGGKDDVQPPRHEAENALAKHISETVSKGGKVLI 404
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L +L++ +PI Y + + + VY Y +N + + +
Sbjct: 405 PAFSTGRGQEILYVLNKMMDGGL-VPRVPI-YVDGMIVETLNVYLMYPHYLNPEVAEEIY 462
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
NPF + K + + I+ + + P++++A G L G F
Sbjct: 463 GGVNPFTTSGNVVIVDRAKRVE--DRINQVAKIAQSEEPAIIIAPHGMLNGGPVLDYFAQ 520
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKE--VTLMNGLTAPLNMQVHYIS---FSAHAD 410
D KN V Y EGT+ + I++ +E V + G + +NM++ +S FS H+D
Sbjct: 521 LAPDDKNKLVFVSYQAEGTIGRRILNGEREFVVRSLVGGESKINMRMEVVSIPGFSGHSD 580
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKL 443
+ +++ E P I L+HGE ++ L T +
Sbjct: 581 RRELMKYVEHIEPKPKKIALIHGEPSKIISLATSI 615
>gi|320101459|ref|YP_004177051.1| KH-domain/beta-lactamase-domain-containing protein [Desulfurococcus
mucosus DSM 2162]
gi|319753811|gb|ADV65569.1| KH-domain/beta-lactamase-domain protein [Desulfurococcus mucosus
DSM 2162]
Length = 647
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/437 (30%), Positives = 218/437 (49%), Gaps = 24/437 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY----FDEIDPSAIDVLLI 81
+T LG EVGRS + + + +L D GI+ Y D + +D +++
Sbjct: 190 VTGLGGFREVGRSSILVETRESKVLLDLGINTGAIDDPGKAYPLLEVDSLRLDELDGVIV 249
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P L K ++G V++T T+ + ++L D V V++ S + F E+DI+
Sbjct: 250 THAHLDHVGLVP-VLYKYGYRGPVYVTKPTRELMIVMLKDLVDVTRRSGRYIPFSEKDIS 308
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDR 198
+ +D+ + +V IK Y AGH+LG+A+ + + G+ ++YTGD+ + R
Sbjct: 309 TMLLHTITVDYDEVTDVAPDIKLTMYNAGHILGSAIVHLHVGMGLHNIVYTGDFKYSDSR 368
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
L A + I+E TYG L + R E+ D++ T + G VLIP FA+GR
Sbjct: 369 LLNKANTVFPRVETLIMEGTYGATLQENRAQAEQGLVDIVKRTAERKGIVLIPVFAVGRG 428
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPF 315
QE++LIL+E P + Y L + A++ Y +N +R N NPF
Sbjct: 429 QEIILILNEAMKTGRIPRMN----IYVEGLVNEVTAIHTQYPEYLNRSLREAIYNGDNPF 484
Query: 316 KFKHISPLNS---IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
+ + P+ S D + PSV++A+ G L G + + D++N+ V GY E
Sbjct: 485 TSEWLKPIESGVARPDIVEDRPSVIIATSGMLTGGPAVDYLRLLAGDERNSLVFVGYQAE 544
Query: 373 GTLAKTIISEPKEVTLM--NGLTA-PLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
GTL + I +EVT++ N + A + ++V+ I FS H+D + + +++ P I
Sbjct: 545 GTLGRKIKDGAREVTMVSENRVEAIHIKLEVYSIEGFSGHSDQRELLEYARDISPRPRRI 604
Query: 427 ILVHGESHEMGRLKTKL 443
+L HGE + L T L
Sbjct: 605 LLNHGEPSALSALSTLL 621
>gi|159041038|ref|YP_001540290.1| beta-lactamase domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919873|gb|ABW01300.1| beta-lactamase domain protein [Caldivirga maquilingensis IC-167]
Length = 636
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/436 (30%), Positives = 216/436 (49%), Gaps = 27/436 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
+T LGA EVGRS + + +L D G+ P+ GM P+FD ID +D ++I+H H
Sbjct: 182 VTCLGACFEVGRSALLIETSESRVLLDAGVKPS-GGMDEAPFFDVIDVDNLDAVVISHAH 240
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LPY L K +KG V+MT TK + ++LLTDY+ +S + ++ S+
Sbjct: 241 LDHIGMLPY-LYKYGYKGPVYMTEPTKYLMEILLTDYIDLSSERGYS-YYGLSELASSLY 298
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREEDRHLRA 202
+D+ +++ IK Y AGH +G+A+ + I ++YTGD+ R L
Sbjct: 299 HSVTVDYGDVTDISPDIKLTLYDAGHEIGSALSHLHIGNGLYNIVYTGDFKYGPSRLLNP 358
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A ++ I+ESTYG + + +PR E ++ T+ GG+VLIP F+ GRAQE
Sbjct: 359 AHSIFKRVELLIMESTYGGKDDVQKPREEAEAELIQLVGKTLENGGKVLIPVFSTGRAQE 418
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKFKH 319
+L +L++ + PI Y + + + V+ + +N ++ + NPF ++
Sbjct: 419 ILFLLNDSMQAG-KLTKAPI-YVDGMVLQTLNVHLMFPDYLNNNVKELIYDGVNPFISEY 476
Query: 320 ISPL----------NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+ P+ + D PS+++A G L G + F D KN+ + Y
Sbjct: 477 VKPVERARNPDKRQEQVMDILQGPPSIILAPHGMLSGGPAMDYFVHMADDAKNSLIFVSY 536
Query: 370 VVEGTLAKTIISEPKEVTLM---NGLTAPLNMQV-HYISFSAHADYAQTSTFLKELMPP- 424
EGTL + +I ++V L +T +NM V H FS H+D Q ++ + P
Sbjct: 537 QGEGTLGRRLIQGERKVNLKYYDQDITVNVNMNVFHEPGFSGHSDRKQLMNYVGRIEPKP 596
Query: 425 -NIILVHGESHEMGRL 439
++LVHGE ++ L
Sbjct: 597 HKVMLVHGEPSKLMNL 612
>gi|434385192|ref|YP_007095803.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
gi|428016182|gb|AFY92276.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
Length = 885
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 229/484 (47%), Gaps = 53/484 (10%)
Query: 9 SLKRRDAPV----------SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA 58
SL R PV +R+ D+LI+TPLGA +G SC + I+ D G P
Sbjct: 263 SLDRSSIPVDGEASVTPESNRDPDRLIVTPLGAARGIGASCFRVQIGPYEIVMDAGTRP- 321
Query: 59 YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL 118
G LP F+ +D +++LITH HLDH +LP F + + + TH T+ I ++
Sbjct: 322 -KGSDPLPAFELLDRP--NLILITHAHLDHIGALPIF-HRDFPEVPMICTHGTREIAHVM 377
Query: 119 LTDYVKVS----KVSVEDM--LFDEQDINRSMDKIEV----LDFHQTVEVNGIKFWCYTA 168
LTD +KV + ED +F D++R++ ++ +DF + G+ A
Sbjct: 378 LTDGLKVQAAQQRQGNEDFGQVFTANDLDRTLFTLQTQPVGVDFS---PLPGLTVRFIHA 434
Query: 169 GHVLGAAMFMVDIAGVRVLYTGDYSREEDR---HLRAAELPQFSPDICIIESTYGVQLHQ 225
GH++GAA + +LYTGDY+ R L+ A+LPQ DI I ESTYG H
Sbjct: 435 GHIVGAACIYMKYGNRSILYTGDYNTTSSRTAEGLKLADLPQA--DILITESTYGSDTHP 492
Query: 226 PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFH--NIPIYYA 283
R +E I + GG VLIPAFALGRAQE++L + FH N+P+Y
Sbjct: 493 SRRTQESDLIKAIVEVVQAGGNVLIPAFALGRAQEIILAI----RTSALFHSINVPVYVD 548
Query: 284 SPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISP-LNSIDD-----FSDVGPSVV 337
L ++ ++QT + + ++N +PF + SP + SI + PSV+
Sbjct: 549 G-LVREVTDLFQTQLELLPTSVQNFAKTQSPFFSEKSSPRIISIASPKERPLAIAHPSVI 607
Query: 338 MASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS-EPKEVTLMNGLTAPL 396
+AS G L G S I + A I GY E + + + S EP ++G +
Sbjct: 608 IASSGMLTGGASIGYAKILLERENAAVFISGYTDEESPGRFLQSLEPGSEIELDGTALTV 667
Query: 397 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES---HEMGR---LKTKLMTELADC 450
++ + SAHAD + + + P ++IL+HG HE+ R L+ K + D
Sbjct: 668 RAKIQRFNLSAHADRVGITQVIHRVNPQHLILIHGSQSALHELSRAGDLRDKYWIHIPDV 727
Query: 451 NTKI 454
I
Sbjct: 728 GDTI 731
>gi|390933363|ref|YP_006390868.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568864|gb|AFK85269.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 820
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/443 (29%), Positives = 216/443 (48%), Gaps = 22/443 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC + GK IL DCGI + S LP F I + +DV+LI+H H+DH
Sbjct: 7 GGASEVGASCYLANIDGKNILLDCGIRMS-SNKDNLPDFQLIQENGGVDVILISHAHMDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + +++MTHA K + ++LL D +K+ + E + E + +++I
Sbjct: 66 IGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEREAEIPAYAEIHVKEMLNRII 124
Query: 149 VLD----FHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
F ++ + +K Y+AGH+ GAA + G Y+GD+SR + A
Sbjct: 125 CHTPGHTFSPFLDAD-LKVTFYSAGHIAGAASIYIVGNGGSFFYSGDFSRFRQNTIEGAS 183
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
+P+ PD+ ESTYG +LH R + E R + I S + GG+VLIPAFALGRAQE++LI
Sbjct: 184 IPKLRPDVAFFESTYGDKLHANRELEESRLVEKIGSVVKNGGKVLIPAFALGRAQEIILI 243
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKFKHISPL 323
L + + + N + Y + K +Y+ + E + + F F ++ P+
Sbjct: 244 LKK--AINKGMINTKV-YVDGMVKDICRIYKLNPNYLRENLAKKIFKGGEIFFDGNVMPV 300
Query: 324 NSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT-----LA 376
+ + ++ P V+++S G L G S+ + D+KN I GY E + L
Sbjct: 301 DMPEMREEIIKEPCVIVSSSGMLTGGPSQWYAEKLAGDEKNLIAITGYQDEESPGRRLLE 360
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
T + + + P+ V SAHAD ++ + + L P + L+HG+ +
Sbjct: 361 LTDEKDDDKKLKLGDKEIPVKCAVDKFGLSAHADMSEILSLVNFLYPKKVFLIHGDPDVI 420
Query: 437 GRLKTKLMTELADCNTKIITPKN 459
L ++ D T + P+N
Sbjct: 421 DFLGREVQR---DIRTDVYVPQN 440
>gi|300867486|ref|ZP_07112137.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
gi|300334480|emb|CBN57305.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
Length = 871
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 142/466 (30%), Positives = 228/466 (48%), Gaps = 45/466 (9%)
Query: 4 VGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGM 62
V Q P + D+ ++ E L++TPLGA +G SC + ++ DCG P Y +
Sbjct: 282 VYQYPLTSKEDSNLA-ENTHLVVTPLGAARGIGASCFRIEIGPYEVVLDCGSRPKGYDPL 340
Query: 63 AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKG-RVFMTHATKAIYKLLLTD 121
AL Y + +P D+L+++H HLDH ++P F + + G R+ T T+ I ++L D
Sbjct: 341 PALEYLN--NP---DLLIVSHAHLDHLGAVPVFHNR--YPGVRIICTQGTREIAHIMLRD 393
Query: 122 YVKVSKVSVEDM-LFDEQDINRSMDKIEV----LDFHQTVEVNGIKFWCYTAGHVLGAAM 176
+KV ++ + LFD+ D+ R++ ++E +DF + G+K AGH+LGAA
Sbjct: 394 CLKVQSLNEDSTPLFDDVDLERTLFRLETQPVGVDFE---PLPGLKVRFINAGHILGAAC 450
Query: 177 FMVDIAGVRVLYTGDYSREEDR---HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233
+ ++YTGDY+ R LR A+LPQ DI I ESTYG H R +E
Sbjct: 451 IYMTCGERSLIYTGDYNTTSSRTTTGLRLADLPQ--ADILITESTYGGDTHPGRKTQETA 508
Query: 234 FTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPI-YYASPLAKKCMA 292
D I + GG VLIPAFALGRAQE+LL + FH + + Y L +
Sbjct: 509 LIDAIAEVVKSGGNVLIPAFALGRAQEILLAI----RTSTTFHTLKVPVYVDGLVRSVTE 564
Query: 293 VYQTYILSMNERIRN--QFANSNP-FKFKHISPLNSIDD-----FSDVGPSVVMASPGGL 344
++ + + + ++N + N P F + P+ I + + PSV++AS G L
Sbjct: 565 TFRDNLDLLPDSVKNFVKQCNREPFFDLNGMPPIIPIGNPKERPLAMAKPSVIVASSGML 624
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI--ISEPKEVTLMNGLTAPLNMQVHY 402
G S + A I GY E + + + ++ E+ L +G + Q+
Sbjct: 625 SGGASVYYAKTLLERENAAIFISGYTDEESPGRLLQNLAVGDEIEL-DGKKITVKAQIKR 683
Query: 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEM------GRLKTK 442
+ SAHAD + + ++ P ++IL+HG + + G LK+K
Sbjct: 684 FNLSAHADKIGLTQVINKVNPKHLILIHGCGNALHSLADSGDLKSK 729
>gi|404330601|ref|ZP_10971049.1| beta-lactamase [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 902
Score = 185 bits (470), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 133/427 (31%), Positives = 213/427 (49%), Gaps = 32/427 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEID-PSAIDVLLITH 83
+T LG GNE+G SC Y+ G +++ D G+ M A D++D P+AI L+TH
Sbjct: 3 VTILGGGNEIGASCTYIQIGGTSLIVDAGMRVHGDDVMPATGMLDQLDKPAAI---LVTH 59
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQD 139
H DH +LP + + +F T T + ++++ D K+ K +D + + ++
Sbjct: 60 AHADHIGALP-VIHRIYPDVPIFATPPTADLMQIMMHDSFKIMKQRCQDTRTLIPYTKEQ 118
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ ++ + + ++ + + AGH+LGA MF+++ G ++L +GD S R
Sbjct: 119 MEETLRAVRLFPASGSIRFGDLSVRLHRAGHILGAVMFVLEGGGEKLLVSGDLSFNAGRT 178
Query: 200 LRAAELPQFS-PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
+ AE+P PD +IESTYG + H RN EKR D + I+ GG LIPAFALGRA
Sbjct: 179 IPGAEVPSGERPDAMLIESTYGNREHSDRNTEEKRLADNVAEVIAGGGFALIPAFALGRA 238
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMN----ERIR---NQF 309
QE+LLIL +Y PEF PIY + C +Y+ Y + RIR + F
Sbjct: 239 QEVLLILQDYMDRGLIPEF---PIYVDGLVTPIC-KIYRRYPQYLKGPVARRIRMHGDVF 294
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+ + P + ++ P+ ++AS G L G S + S KNA I GY
Sbjct: 295 LTEG--RCTAVEPKDR-ENVLRGKPACIVASSGMLIGGASVWYAERLVSGDKNAIFITGY 351
Query: 370 VVEGTLAKTIIS----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
E + + ++S + +E+ L NG P+ +V SAHAD + + F+ + P
Sbjct: 352 QDEESPGRKLLSLAEGQSRELEL-NGTLHPVRCRVGKYGLSAHADAGELTRFVAMVRPSR 410
Query: 426 IILVHGE 432
++VHG+
Sbjct: 411 TLIVHGD 417
>gi|410672076|ref|YP_006924447.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
gi|409171204|gb|AFV25079.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
Length = 636
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 229/453 (50%), Gaps = 36/453 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDP-SAIDVLLITH 83
IT LG EVGRSC +S I+ DCG++ A M Y E P + ID +++TH
Sbjct: 183 ITSLGGAKEVGRSCFIISTPESRIMVDCGVNVASDDNMTPYLYVPEAFPINQIDAVVLTH 242
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH +P L K F+G V+ T T+ + LL DY+ V+ + + D+
Sbjct: 243 AHLDHQGLVP-LLYKYGFEGPVYCTPPTRDLMALLQLDYIDVAAKEGKRPPYSSADVREV 301
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHL 200
+ VLD+ + ++ +K + AGH+LG+A+ F + V++TGD+ E+ R
Sbjct: 302 LKHTIVLDYEEVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLHNVVFTGDFKYEKTRLF 361
Query: 201 RAA--ELPQFSPDICIIESTYG-VQLHQPRNIR-EKRFTDVIHSTISQGGRVLIPAFALG 256
AA + P+ + ++ESTYG QP + E +VI++T+ + G VLIPAFA+G
Sbjct: 362 DAAVNKFPRV--ESVVMESTYGSANALQPSLLEAENNLKNVINTTLIRNGVVLIPAFAVG 419
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNP 314
R+QE++++L++ E N+P+Y + + A++ TY +N +R NP
Sbjct: 420 RSQEVMIVLEDAIRKG-EIPNVPVYLDG-MIWEATAIHATYPEYLNNDLRKLIFQKGENP 477
Query: 315 FKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F + P++S + + P V++A+ G + +G + F + D+KN V GY
Sbjct: 478 FLAECFKPVDSNELRQKILQEPEPCVILATSGMMNAGPVIEYFKKFADDEKNTLVFVGYQ 537
Query: 371 VEGTLAKTIISEPKEVTLM--NGL-TAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPP 424
+GTL + I KE+ L NG +NMQV + FS H+D Q ++K++ P
Sbjct: 538 ADGTLGRRIQKGWKEIPLSTNNGTHVISMNMQVEVVDGFSGHSDRRQLMDYIKKMKPRPE 597
Query: 425 NIILVHGES----------HEMGRLKTKLMTEL 447
+ HG+ H+ +L+T+ +T L
Sbjct: 598 RVFTEHGDERSCLDLASSIHKKNKLETRALTNL 630
>gi|255524630|ref|ZP_05391583.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
gi|255511654|gb|EET87941.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
Length = 827
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 129/452 (28%), Positives = 221/452 (48%), Gaps = 19/452 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHF 84
I+ LG +EVG SC+ + K IL DCGI S LP F I + ID ++I+H
Sbjct: 3 ISFLGGAHEVGGSCILLKIYNKNILLDCGIRQGASK-DPLPDFRTIQEQGGIDAIIISHA 61
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRS 143
H+DH SLP + K +++ + TK + K+LL D +K+ K ++ L+ E D+
Sbjct: 62 HMDHIGSLP-IISKEYPGAKIYANNMTKDLMKVLLYDSLKIMKNREAEIPLYAEVDVENM 120
Query: 144 MDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
+++I +++ + IK YTAGH+ GA+ + + Y+GD+S + +
Sbjct: 121 LNRIFTINYMVEFPIFEDIKITFYTAGHIAGASCVYITTPEGSLFYSGDFSVFSQKTVEG 180
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
++P+ PD I E+TYG +LH R + E+R +I+ + G++LIPAFALGRAQE++
Sbjct: 181 LKVPKLRPDAAIFETTYGDRLHANREVEEERLLQLINECEANRGKMLIPAFALGRAQEII 240
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHIS 321
LI+ + N N+ I Y + K VY+ L + + + PF +I
Sbjct: 241 LIIKKAL-NKKSIKNVKI-YVDGMIKDINRVYKLNPLYLKNSLGKKILRGIEPFYDDNII 298
Query: 322 PLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
++ + D P ++++S G L G S+ + + VI GY E + +
Sbjct: 299 AVDKKEIREKILEDKEPCIIISSSGMLTGGYSQYYAEKIAPMENGYIVITGYQDEESPGR 358
Query: 378 T----IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ E + +NG + P+ +V + SAH D + + + L P NI +VHG
Sbjct: 359 KLLNLLEEEEDKKLELNGRSIPVKCKVEKVGLSAHGDKGEIKSLINLLTPNNIFMVHGNE 418
Query: 434 HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ +L++E+ ++ PK + E+
Sbjct: 419 EVVESFSKELLSEV---RARVYAPKCGECYEV 447
>gi|297545551|ref|YP_003677853.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843326|gb|ADH61842.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 829
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 219/449 (48%), Gaps = 22/449 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G NEVG SC ++ GK IL DCGI + S LP F I + +D ++++H HLDH
Sbjct: 7 GGANEVGASCYLINLDGKNILLDCGIRMS-STKDNLPDFRLIQEHGGVDAIIVSHAHLDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + + +++MTHATK + ++LL D +K+ + E ++ E + +D++
Sbjct: 66 TGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKIMERESEIPIYAENHVKDMLDRVL 124
Query: 149 VLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
T + IK Y AGH+LGAA + A + Y+GD+S + A +
Sbjct: 125 CYTPGYTFTPFPDSQIKVTLYPAGHILGAASVYITSAEGSIFYSGDFSGFRQNTIEGAFI 184
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P+ PD+ I ESTYG +LH R + E R + + S I++GG+V+IPAFALGRAQE++LIL
Sbjct: 185 PKLRPDVAIFESTYGDKLHANRELEETRLIEKVSSIINEGGKVIIPAFALGRAQEIILIL 244
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF-KHISPLN 324
+ + + Y + ++ VY+ + + + + N F ++ +
Sbjct: 245 KKAINKGLLKTKV---YVDGMVREVCRVYKLNPNYLRQNLAKKIFKGNDIFFDDNVIEVE 301
Query: 325 SIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS- 381
+ ++ V+++S G + G S+ + D+KN I GY E + + ++
Sbjct: 302 KPEMREEIIKESCVILSSSGMITGGPSQWYVEKLAQDEKNLIAITGYQDEESPGRRLLDI 361
Query: 382 -----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
E +++ + + +N + SAHAD + L P I LVHG+ +
Sbjct: 362 MEESPENRKIKI-DDKEILINASIDKFGLSAHADMGEILALANSLYPKKIFLVHGDPEII 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEM 465
L ++ D +++ P N E+
Sbjct: 421 NFLGKEVQ---KDLKSEVYIPSNGDIYEI 446
>gi|289579410|ref|YP_003478037.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
gi|289529123|gb|ADD03475.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
Length = 829
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 127/449 (28%), Positives = 219/449 (48%), Gaps = 22/449 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G NEVG SC ++ GK IL DCGI + S LP F I + +D ++++H HLDH
Sbjct: 7 GGANEVGASCYLINLDGKNILLDCGIRMS-STKDNLPDFRLIQEHGGVDAVIVSHAHLDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + + +++MTHATK + ++LL D +K+ + E ++ E + +D++
Sbjct: 66 TGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKIMERESEIPIYAENHVKDMLDRVL 124
Query: 149 VLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
T + IK Y AGH+LGAA + A + Y+GD+S + A +
Sbjct: 125 CYTPGYTFTPFPDSQIKVTLYPAGHILGAASVYITSAEGSIFYSGDFSGFRQNTIEGAFI 184
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P+ PD+ I ESTYG +LH R + E R + + S I++GG+V+IPAFALGRAQE++LIL
Sbjct: 185 PKLRPDVAIFESTYGDKLHANRELEETRLIEKVSSIINEGGKVIIPAFALGRAQEIILIL 244
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF-KHISPLN 324
+ + + Y + ++ VY+ + + + + N F ++ +
Sbjct: 245 KKAINKGLLKTKV---YVDGMVREVCRVYKLNPNYLRQNLAKKIFKGNDIFFDDNVIEVE 301
Query: 325 SIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS- 381
+ ++ V+++S G + G S+ + D+KN I GY E + + ++
Sbjct: 302 KPEMREEIIKESCVILSSSGMITGGPSQWYVEKLAQDEKNLIAITGYQDEESPGRRLLDI 361
Query: 382 -----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
E +++ + + +N + SAHAD + L P I LVHG+ +
Sbjct: 362 MEESPENRKIKI-DDKEILINASIDKFGLSAHADMGEILALANSLYPKKIFLVHGDPEII 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEM 465
L ++ D +++ P N E+
Sbjct: 421 NFLGKEVQ---KDLKSEVYIPSNGDIYEI 446
>gi|315231930|ref|YP_004072366.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
gi|315184958|gb|ADT85143.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
Length = 648
Score = 184 bits (468), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 231/466 (49%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D GI+ A A P+FD ++ +D
Sbjct: 188 ITGLGGFREVGRSALLVQTNESFVLVDFGINVAALNDPKKAFPHFDAPEFRYVLNEGLLD 247
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + + + L+
Sbjct: 248 AIIITHAHLDHSGLLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGAEPLYKP 307
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ ++ + AGH+LG+A+ + I V TGD+
Sbjct: 308 KDIKEVVKHTITLDYGEVRDISPDMRLTLHNAGHILGSAIVHLHIGNGLHNVAVTGDFKF 367
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R A + I+ESTYG PR EK+ +VIH TI + G+VLIPA
Sbjct: 368 IPTRLFEPANARFPRLETLIMESTYGGSNDYQMPREDAEKKLIEVIHQTIKRKGKVLIPA 427
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L+EY +PIY + + A++ Y +++ +R+Q +
Sbjct: 428 MAVGRAQEIMMVLEEYARVG--GIEVPIYLDG-MIWEATAIHTAYPEYLSKHLRDQIFHE 484
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D +N+ +
Sbjct: 485 GYNPFLNEIFKPVANSKERQDIIDSEEPAIIIASSGMLVGGPSVEYFKQLAPDPRNSIIF 544
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + KE+ + G T + NM+VH I FS HAD + +++ ++
Sbjct: 545 VSYQAEGTLGRQVQRGLKEIPTIGEGGRTEVIRVNMEVHTIDGFSGHADRRELMSYVAKV 604
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P +I VHGE + L + L + +T+ P N ++ +
Sbjct: 605 RPRPERVITVHGEPQKCLDLASSLHKRFS-ISTR--APNNLDAIRL 647
>gi|410460059|ref|ZP_11313745.1| RNA-metabolising metallo-beta-lactamase [Bacillus azotoformans LMG
9581]
gi|409927679|gb|EKN64809.1| RNA-metabolising metallo-beta-lactamase [Bacillus azotoformans LMG
9581]
Length = 907
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 137/437 (31%), Positives = 220/437 (50%), Gaps = 30/437 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
I+ LG GNEVG SC++++ +L D G+ G +LP ++ +D +LITH
Sbjct: 3 ISILGGGNEVGASCIHINMGETNLLVDAGMR--MHGDDSLPALGMLESLGKLDAVLITHA 60
Query: 85 HLDHAASLPYFLEKTTFKGRVF-MTHATKAIYKLLLTDYVKVSKVSVEDML----FDEQD 139
H DH +LP + + F F T T + K+++ D K+ + M + E+
Sbjct: 61 HADHIGALP--IVHSLFPDIPFYATPPTIDLIKIMMKDSYKILEQRSYQMNTLMPYTEEQ 118
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+N + + + + + +K + AGH+LGA MF+++ ++L TGD S R
Sbjct: 119 VNNLFNSLLHIPASGVLRIGDLKITSFRAGHILGAVMFLIEGDQQQLLITGDLSFRAGRT 178
Query: 200 LRAAELP-QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
+ AE+P Q +PD+ +IESTYG + H RN E+ + + IS GG VLIPAFALGRA
Sbjct: 179 IPGAEVPHQVNPDVIVIESTYGNRAHTDRNTEERLLAEHVSEVISSGGFVLIPAFALGRA 238
Query: 259 QELLLILDEYWSNH--PEFHNIPIY---YASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
QE+LL+L +Y PEF PIY +P++K + Q + RIR N +
Sbjct: 239 QEVLLVLQDYMERGLIPEF---PIYVDGLVTPISKIYNSYPQYLKGPVAHRIRK---NGD 292
Query: 314 PF----KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
F + + +SP ++ P ++AS G L G S + S++KNA I GY
Sbjct: 293 VFITEGRVRAVSP-KERNEVLQGKPGCIVASSGMLTGGASSWYAERLISNEKNAIFITGY 351
Query: 370 VVEGTLAKTI--ISEPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
E + + + ++E E L +NG T + V S HAD + + F++ L P
Sbjct: 352 QDEESPGRKLLNLAENIENQLELNGTTYEVKCLVRKYGLSGHADANEINRFIQSLKPTYT 411
Query: 427 ILVHGESHEMGRLKTKL 443
+LVHG+ ++ +++
Sbjct: 412 LLVHGDDDARSQIASQI 428
>gi|408404164|ref|YP_006862147.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364760|gb|AFU58490.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 700
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 132/464 (28%), Positives = 230/464 (49%), Gaps = 23/464 (4%)
Query: 2 ASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YS 60
A+V +P S K + S+E ++++ LG +VGRSC + ++ DCGI+P S
Sbjct: 226 AAVSEPGSAKPQSWSTSKE--EVMLFCLGGVKQVGRSCFIVVTPESKVMLDCGINPGEMS 283
Query: 61 GMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLL 118
G+ A P D D +D ++I H H+DH LP K +KG V+ T T + LL
Sbjct: 284 GLNAYPRLDWFNFDLDDLDAVIIGHAHIDHQGFLPALF-KYGYKGPVYCTEPTLPLMTLL 342
Query: 119 LTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMF 177
D VK++ + + ++ +D+N + L + + +++ I AGH++G+A
Sbjct: 343 QMDSVKIANSNGTYLPYEARDVNEVIKHCITLPYGKPTDISPDITITLQNAGHIMGSATV 402
Query: 178 MVDIAGV-RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRF 234
++I+G +LY+GDY + L +A + I ESTYG + + + + F
Sbjct: 403 HLNISGAHNILYSGDYKYARTQLLDSAVSMYPRVETLITESTYGNTTDVMPDQQVVYRSF 462
Query: 235 TDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVY 294
T+ I+ T+ +GG+VLIP A+GRAQE++L++ + PIY + + A++
Sbjct: 463 TESINKTLIEGGKVLIPVPAVGRAQEIMLVMAKEM-REGRLVESPIYIEG-MISEASAIH 520
Query: 295 QTYILSMNERIRNQFANS-NPFK---FKHISPLNSIDD-FSDVGPSVVMASPGGLQSGLS 349
+Y + +R + NPF+ F IS DD +D P++VMA+ G L+ G S
Sbjct: 521 MSYAHYLGSEVRKSVSQGINPFQSEYFTVISGHGKRDDVLNDENPAIVMATSGMLEGGPS 580
Query: 350 RQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP-KEVTLMNGL----TAPLNMQVHYI- 403
+ F + KN + Y + GTL + ++ EV++M+ P+ Q I
Sbjct: 581 VEYFKELAPNPKNKIMFVSYQINGTLGRRVLDGAMSEVSMMDKTGKVKVVPVRCQTQKID 640
Query: 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTEL 447
FS H+D+ Q F+ + P +++ HGE + + + + + L
Sbjct: 641 GFSGHSDFNQILNFVSRVKPKRVLVNHGERSKSENVASAIYSRL 684
>gi|315426553|dbj|BAJ48183.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485301|dbj|BAJ50955.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 235/472 (49%), Gaps = 43/472 (9%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP--SAI 76
E + IT LGAG +VGRSC+ + T++ DCG+ A S ++ P FD I +
Sbjct: 175 ESRDVRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEEL 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H HLDH +PY K ++G V+ T + L +TDYV V+ +
Sbjct: 235 DAVVLSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSVAGKEGTFAPYG 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYS 193
E DI ++ L + + I+ Y AGH+LG++ + I G+ ++YTGD+
Sbjct: 294 ESDIRLALQHSFPLKYGVVTNITPDIRLIFYNAGHILGSSAVHLHIGEGLHNIVYTGDFK 353
Query: 194 REEDRHLR--AAELPQFSPDICIIESTYGVQ-----LHQPRNIREKRFTDVIHSTISQGG 246
E L ++ P+ + I+ESTYG L Q E + I +TI++GG
Sbjct: 354 YERSTALDPCVSKFPRV--ETLIMESTYGATPVPYTLEQS----EALLAEKITATINRGG 407
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT----YILSMN 302
+V+IP A+GRAQE++L+L++ ++ + P++ L + A++ + +
Sbjct: 408 KVIIPVPAIGRAQEIMLVLNKLFTEK-KLVETPVFLDG-LVIEATAIHTGFPDYFTAELQ 465
Query: 303 ERIRNQFANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCS 358
+R+R N F ++ +P+ ++ P VV+++ G L+ G + +
Sbjct: 466 QRLRE---GENIFLSEYFTPVKGESQRQEILEMREPMVVISTSGMLEGGPVLKYLKAFGG 522
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP----LNMQVHYI-SFSAHADYAQ 413
D+ N + Y VEGTL +T++ +EV L NG P + MQV + FS H+ Q
Sbjct: 523 DENNLLLFVSYQVEGTLGRTLLKGVREVLLRNGEGKPEVLNVKMQVEKVDGFSGHSSRQQ 582
Query: 414 TSTFLKELMPP--NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
++K +MP NIILVHGE + + L T L T + + I TP N +++
Sbjct: 583 LINYVKRVMPKPRNIILVHGEENAVESLATAL-TRITPAS--IFTPHNLETI 631
>gi|448406221|ref|ZP_21572743.1| mRNA 3'-end processing factor-like protein [Halosimplex
carlsbadense 2-9-1]
gi|445678060|gb|ELZ30555.1| mRNA 3'-end processing factor-like protein [Halosimplex
carlsbadense 2-9-1]
Length = 640
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 227/476 (47%), Gaps = 36/476 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + + IT LG EVGR+ +S +L DCG P G +PY +
Sbjct: 174 PTTADNQWVRITTLGCCREVGRAAFLLSTPETRVLIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P +ID +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPDSIDAVVLTHAHLDHSALIPILF-KYGYDGPIYATEPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
+D + +++ +++ ++ +K + AGH+LG+A+ F V V
Sbjct: 291 RTPPYDSSMVRKALKHTIPVEYGNVTDIAPDVKLTMHNAGHILGSAVSHFHVGEGFYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD + R L A + P+ + ++ESTYG + + E++ VI+
Sbjct: 351 FSGDIHYRDTRLLDGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSERKLETVINEAHE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GG++LIPAFA+GR+QEL+L+L+E +P+Y + ++ A++ Y + E
Sbjct: 409 KGGKILIPAFAVGRSQELMLVLEEAMRED-RIPTMPVYLDG-MIREATAIHAAYPDHLRE 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
R+R + + + NPF P++ D D D PS+V+ + G + G +
Sbjct: 467 RLRQRILYEDDNPFLADQFRPVDGGDEMRRDVVDDEPSIVLTTSGMITGGPIMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMN--GLTA---PLNMQVHYI-SFSAHADY 411
D ++ V GY EGTL + I E++L + G A LNM V + FS HAD
Sbjct: 527 GDPESTLVFVGYQAEGTLGRQIQQGRDEISLNDTAGRGANRVALNMDVQTVDGFSGHADR 586
Query: 412 AQTSTFLKELMP-PNIIL-VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
F++ + P P +L VHG+ L + L E + + PKN ++ +
Sbjct: 587 QGLENFVRTMNPRPETVLCVHGDESSTDHLSSALYEEFG---MRTVAPKNLETFRL 639
>gi|315425373|dbj|BAJ47039.1| mRNA 3'-end processing factor [Candidatus Caldiarchaeum
subterraneum]
Length = 638
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 140/472 (29%), Positives = 235/472 (49%), Gaps = 43/472 (9%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP--SAI 76
E + IT LGAG +VGRSC+ + T++ DCG+ A S ++ P FD I +
Sbjct: 178 ESRDVRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEEL 237
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H HLDH +PY K ++G V+ T + L +TDYV V+ +
Sbjct: 238 DAVVLSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSVAGKEGTFAPYG 296
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYS 193
E DI ++ L + + I+ Y AGH+LG++ + I G+ ++YTGD+
Sbjct: 297 ESDIRLALQHSFPLKYGVVTNITPDIRLIFYNAGHILGSSAVHLHIGEGLHNIVYTGDFK 356
Query: 194 REEDRHLR--AAELPQFSPDICIIESTYGVQ-----LHQPRNIREKRFTDVIHSTISQGG 246
E L ++ P+ + I+ESTYG L Q E + I +TI++GG
Sbjct: 357 YERSTALDPCVSKFPRV--ETLIMESTYGATPVPYTLEQS----EALLAEKITATINRGG 410
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT----YILSMN 302
+V+IP A+GRAQE++L+L++ ++ + P++ L + A++ + +
Sbjct: 411 KVIIPVPAIGRAQEIMLVLNKLFTEK-KLVETPVFLDG-LVIEATAIHTGFPDYFTAELQ 468
Query: 303 ERIRNQFANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCS 358
+R+R N F ++ +P+ ++ P VV+++ G L+ G + +
Sbjct: 469 QRLRE---GENIFLSEYFTPVKGESQRQEILEMREPMVVISTSGMLEGGPVLKYLKAFGG 525
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP----LNMQVHYI-SFSAHADYAQ 413
D+ N + Y VEGTL +T++ +EV L NG P + MQV + FS H+ Q
Sbjct: 526 DENNLLLFVSYQVEGTLGRTLLKGVREVLLRNGEGKPEVLNVKMQVEKVDGFSGHSSRQQ 585
Query: 414 TSTFLKELMPP--NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
++K +MP NIILVHGE + + L T L T + + I TP N +++
Sbjct: 586 LINYVKRVMPKPRNIILVHGEENAVESLATAL-TRITPAS--IFTPHNLETI 634
>gi|347522769|ref|YP_004780339.1| KH-domain/beta-lactamase-domain containing protein [Pyrolobus
fumarii 1A]
gi|343459651|gb|AEM38087.1| KH-domain/beta-lactamase-domain protein [Pyrolobus fumarii 1A]
Length = 649
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 217/442 (49%), Gaps = 25/442 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
I LG EVGRS + + +L D G++P +G P D EI P +D ++ITH
Sbjct: 184 IVALGGFMEVGRSAILVETSESRVLLDLGVNPGGTGYDMYPRLDIDEIRPEELDAVIITH 243
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH +P FL K FKG V++T T+ + L L D++ V F + DI +
Sbjct: 244 AHLDHMGLVP-FLFKYGFKGPVYVTKPTRDLMVLSLFDFLDVVTKEGRKPPFSQHDIRKM 302
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDRHL 200
+ LD+ + +V IK Y AGH+LG+A+ + I G+ ++YTGD R L
Sbjct: 303 ILHTIALDYEEVTDVTPDIKLTFYNAGHILGSAIAHLHIGEGLHNIVYTGDMKYANTRLL 362
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI-SQGGRVLIPAFALGRAQ 259
A + IIESTYG + Q R+ E I TI ++ G+VLIP A+GRAQ
Sbjct: 363 TKAHTKFPRVETLIIESTYGNKRQQKRSQAEAELIQWIVRTIEAKKGKVLIPVLAVGRAQ 422
Query: 260 ELLL-ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKF 317
E++L I+D + +PIY + + A++ TY + +R + NPF
Sbjct: 423 EIILVIVDAIQKGY--LRKVPIYIDG-MIDEVTAIHLTYPEYLAPSLRKKILYGENPFTA 479
Query: 318 KHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
+ + + ++ P+V++A+ G L G S + F D+KN + Y V+G
Sbjct: 480 EFLIKVEGAQMREEIINSSEPAVIIATSGMLNGGPSVEYFKNLAHDEKNTLIFVSYQVKG 539
Query: 374 TLAKTIISEPK--EVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPP 424
TL + ++ K ++TL+ T +NM V I FS H+D Q FL+++ P
Sbjct: 540 TLGRRVLEAGKGGKITLITPEGKLETININMDVVAIEGFSGHSDIDQLIAFLRDIEPKPK 599
Query: 425 NIILVHGESHEMGRLKTKLMTE 446
+IL HGE + + + ++ E
Sbjct: 600 TVILNHGEPEAIRKFRRRIEAE 621
>gi|438002123|ref|YP_007271866.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
gi|432178917|emb|CCP25890.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
Length = 469
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 138/468 (29%), Positives = 226/468 (48%), Gaps = 34/468 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G EVG SC ++ GK IL DCGI S LP F I + ID ++I+H H DH
Sbjct: 7 GGAQEVGASCYLVTIDGKNILLDCGIRLT-SSKDTLPDFRLIQENGGIDAIIISHAHTDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + ++MTH +K + ++LL D +K+ + E ++ E + + +
Sbjct: 66 TGALPA-ISRQFPNALIYMTHMSKDLTRVLLYDSLKIMEREPEIPIYAENHVQEMLGRTV 124
Query: 149 VLDFHQTVEV---NGIKFWCYTAGHVLGAA-MFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
+ + ++ + I Y+AGH+ GAA ++MV G + Y+GD S + A
Sbjct: 125 CFSPNFSFKLFSDSNITATFYSAGHIAGAASIYMVGSEG-SLFYSGDISGFRQNTIEGAT 183
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
+P+ PD+ I ESTYG +LH R + E+R + I+ I GG+VL+PAFALGRAQE++LI
Sbjct: 184 VPKLRPDVAIFESTYGDKLHANRQVEEQRLIESINEVIINGGKVLVPAFALGRAQEVILI 243
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFANSNPFKFKHIS 321
L + N + + PI Y + K +Y+ Y+ S + F + F ++S
Sbjct: 244 LKKAM-NRGQLLSCPI-YVDGMVKDICRIYKLNPNYLRS--NLAKKVFRGVDIFYDDNVS 299
Query: 322 PLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
P+ + + ++ P V++AS G L G S+ +++ N + GY E + K
Sbjct: 300 PVANPEFRKEILESKNPCVIIASSGMLTGGPSQMYAQSLATNENNLIAVTGYQDEESPGK 359
Query: 378 TIIS---------EPKEVTLMNG-LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
++ + ++ T+ G + +V SAHAD + L P I
Sbjct: 360 DLLKIIETDDDADKKQDRTIKLGEREISVKCRVGKFGLSAHADKMEILNIANNLYPRRIF 419
Query: 428 LVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKT 475
LVHG + L ++ D N I P+N + E+ N +K +KT
Sbjct: 420 LVHGNPEAINSLGKEIQK---DINGFIYAPRNGEQYEI--NIKKTSKT 462
>gi|296242984|ref|YP_003650471.1| KH-domain/beta-lactamase-domain-containing protein [Thermosphaera
aggregans DSM 11486]
gi|296095568|gb|ADG91519.1| KH-domain/beta-lactamase-domain protein [Thermosphaera aggregans
DSM 11486]
Length = 651
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 133/428 (31%), Positives = 219/428 (51%), Gaps = 28/428 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS + + + +L D GI+ A PY D + +D +++
Sbjct: 190 ITALGGFREVGRSSILVETRESRLLLDMGINTGVMDDPFKAFPYIDVDSLKLEELDGVIV 249
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P L K ++G +++T T+ + ++L D ++VS+ S + F E+D+
Sbjct: 250 THSHLDHVGLVP-ILYKYGYRGPLYVTKPTRELMIVMLKDLIEVSRRSGRYLPFTEKDLT 308
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDR 198
+ +++ + +V IK Y AGH+LG+A+ + + G+ ++YTGD+ R
Sbjct: 309 TMILHTITVEYDEVTDVAPDIKLTMYNAGHILGSAIVHLHVGMGLHNIVYTGDFKYASTR 368
Query: 199 HLRAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
L A E P+ + I+ESTYG Q R E +++ T+ + G VLIP FA+G
Sbjct: 369 LLDRANTEFPRV--ETLIMESTYGSAKQQNRLEAEAELVNIVKRTVERQGIVLIPVFAVG 426
Query: 257 RAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSN 313
R QE++LIL+E N P+ + Y L + A++ Y ++ IR + N
Sbjct: 427 RGQEIILILNEAMKNGLIPKLN----VYVEGLVNEVTAIHTQYPEYLSRSIREAIYRGEN 482
Query: 314 PFKFKHISPLNS---IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF + L S D + PSV++A+ G L G + + SD +N+ V GY
Sbjct: 483 PFTADWLKILESGVARPDIVEDRPSVIIATSGMLTGGPAVDYLKLLASDPRNSLVFVGYQ 542
Query: 371 VEGTLAKTIISEPKEVTLM--NGLTA-PLNMQVHYI-SFSAHADYAQTSTFLKELMPP-- 424
EGTL + I +E+T++ N + A ++++V+ I FS H+D A+ + + + P
Sbjct: 543 AEGTLGRKIKDGMRELTMVVENKVEAVKIDLEVYSIDGFSGHSDQAELVKYAQSIKPKPR 602
Query: 425 NIILVHGE 432
IIL HGE
Sbjct: 603 KIILNHGE 610
>gi|315426611|dbj|BAJ48239.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 232/472 (49%), Gaps = 43/472 (9%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP--SAI 76
E + IT LGAG +VGRSC+ + T++ DCG+ A S ++ P FD I +
Sbjct: 175 ESRDVRITVLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIPNLVEEL 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++++H HLDH +PY K ++G V+ T + L +TDYV V+ +
Sbjct: 235 DAVVLSHAHLDHVGLVPYLF-KYGYRGPVYAVEPTLPLMALEVTDYVSVAGKEGTFAPYG 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYS 193
E DI ++ L + + I+ Y AGH+LG++ + I G+ ++YTGD+
Sbjct: 294 ESDIRLALQHSFPLKYGVVTNITPDIRLIFYNAGHILGSSAVHLHIGEGLHNIVYTGDFK 353
Query: 194 REEDRHLR--AAELPQFSPDICIIESTYGVQ-----LHQPRNIREKRFTDVIHSTISQGG 246
E L ++ P+ + I+ESTYG L Q E + I +TI++GG
Sbjct: 354 YERSTALDPCVSKFPRV--ETLIMESTYGATPVPYTLEQS----EALLAEKITATINRGG 407
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT----YILSMN 302
+V+IP A+GRAQE++L+L++ ++ + P++ L + A++ + +
Sbjct: 408 KVIIPVPAIGRAQEIMLVLNKLFTEK-KLVETPVFLDG-LVIEATAIHTGFPDYFTAELQ 465
Query: 303 ERIRNQFANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCS 358
+R+R N F ++ +P+ ++ P VV+++ G L+ G + +
Sbjct: 466 QRLRE---GENIFLSEYFTPVKGESQRQEILEMREPMVVISTSGMLEGGPVLKYLKAFGG 522
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP----LNMQVHYI-SFSAHADYAQ 413
D+ N + Y VEGTL +T++ +EV L NG P + MQV + FS H+ Q
Sbjct: 523 DENNLLLFVSYQVEGTLGRTLLKGVREVLLRNGEGKPEVLNVKMQVEKVDGFSGHSSRQQ 582
Query: 414 TSTFLKELMPP--NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
++K +MP NIILVHGE + + L T L I TP N +++
Sbjct: 583 LINYVKRVMPKPRNIILVHGEENAVESLATTLA---KITPASIFTPHNLETI 631
>gi|171184545|ref|YP_001793464.1| beta-lactamase domain-containing protein [Pyrobaculum neutrophilum
V24Sta]
gi|170933757|gb|ACB39018.1| beta-lactamase domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 634
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/455 (29%), Positives = 222/455 (48%), Gaps = 34/455 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + +T LGA EVGRS + +S +L DCG+ P P D +D
Sbjct: 167 PVVKEG-AITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYD-EDFPMLDAVDIDR 224
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K ++G V+MT TK +LL DY+++ + + F
Sbjct: 225 LDAVVLTHAHMDHVGCLP-FLYKYGYRGPVYMTDPTKYQAFILLMDYIELKEREGLEPAF 283
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
+ D+ + LD+ + ++ +K Y AGH +G+AM + I R +LYTGD+
Sbjct: 284 SKADVESVIYHTITLDYEEVTDIAPDVKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 343
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR E + +S+GG+VLI
Sbjct: 344 KYGKTRLLNRAVSKFKRVEMLIMESTYGGRDDVQPPRVEAENALAKHVAEAVSRGGKVLI 403
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L IL++ +P+Y + + A Y Y +N + + +
Sbjct: 404 PAFSTGRGQEILYILNKMIEGGL-IPRVPVYVDGMIVETLNA-YLMYPHYLNPEVAEEVY 461
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
NPF + K + + I+ + + P+V++A G L G F
Sbjct: 462 GGVNPFTTSGSVVIVDRAKRVE--DRINQVAKIAQSEEPAVIIAPHGMLNGGPVVDYFSQ 519
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKE--VTLMNGLTAPLNMQVHYIS---FSAHAD 410
D +N V Y EGTL + I++ +E V + G A + M++ +S FS H+D
Sbjct: 520 LAHDPRNKLVFVSYQAEGTLGRRILNGEREFVVRSLVGGEAKVEMRMEAVSIPGFSGHSD 579
Query: 411 YAQTSTFLKELMPP--NIILVHGESHEMGRLKTKL 443
+ +++ L P I+L+HGE ++ L T +
Sbjct: 580 RRELMKYVEHLEPKPRKIVLIHGEPSKIVSLATSI 614
>gi|374724464|gb|EHR76544.1| putative metal-dependent RNase [uncultured marine group II
euryarchaeote]
Length = 634
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 130/461 (28%), Positives = 230/461 (49%), Gaps = 28/461 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF---DEIDPSAIDVLLIT 82
+T LG+ EVGR+C +++ I+ D G++ A S +PYF + + +D +++T
Sbjct: 180 VTALGSYREVGRACHFVTTNESRIMIDVGVNIA-SDTDPMPYFTAPEALPLEKLDAVVLT 238
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDHA LP K ++G V+ T T+ + LL TDY+KV + +D +DI
Sbjct: 239 HSHLDHAGMLPVLF-KYGYRGPVYCTPPTRDLMLLLQTDYLKVGGAEGKRAPYDMEDIRT 297
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDRH 199
M + +D+ +T ++ +K AGH+LG++ + I + ++++GD E+
Sbjct: 298 CMKHVVDVDWGETTDIAPDVKLTFSNAGHILGSSAVHLHIGEGKHNIVFSGDQKYEKSWL 357
Query: 200 LRAAELPQFSPDICIIESTYGVQL-HQP-RNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
AA + +IESTYG +QP R + D++ TIS+GG+++ P FA+GR
Sbjct: 358 FDAANTRFPRVETLVIESTYGASGDYQPSRQEANQELQDIVSRTISRGGKLICPVFAVGR 417
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA---NSNP 314
+QE+++ +DE + + + +P++ + ++ A++ ++ + +R NP
Sbjct: 418 SQEVMIAIDELFRSG-QVKPVPVWLDG-MIQEATAIHASHPDYLTSSLRKSLLKDDGENP 475
Query: 315 FKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F + P+ + D P +V+A+ G L G + F W + +N+ GY
Sbjct: 476 FTSEWFRPVKGRELRESIIMDNSPCIVLATSGMLNGGPVMEYFRHWAHEDRNSLCFVGYQ 535
Query: 371 VEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYIS---FSAHADYAQTSTFLKEL--MPP 424
EGTL + + EV + +NG T + + ++ FS H+D Q F+ +L P
Sbjct: 536 AEGTLGRRLQKGFGEVPMVINGKTEIVKIGCEMVTIDGFSGHSDRRQLLDFVDQLSPKPK 595
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
NII HG+ H+ L L E C T PKN +++ +
Sbjct: 596 NIICHHGDYHKCNELGHTL-RERYKCRT--YAPKNLETIRL 633
>gi|206890479|ref|YP_002249123.1| metallo-beta-lactamase superfamily [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742417|gb|ACI21474.1| metallo-beta-lactamase superfamily [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 459
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 218/417 (52%), Gaps = 24/417 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIH----PAYSGMAALPYFDEIDPSAIDVLLITHF 84
GA V SC + + + IL +CG+ + P+ +P ID++++TH
Sbjct: 23 FGATKTVTGSCFLLEIEKQNILIECGLFQENDKEFLNYEPFPF----NPRKIDLVILTHA 78
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK-VSVEDMLFDEQDINRS 143
HLDH+A +P L K + R+ T ATK + +++L D +KV K + + +L+DE++I ++
Sbjct: 79 HLDHSALIPK-LVKEGLRCRIITTPATKDLLEIMLFDALKVQKNENHKQLLYDEENIYKA 137
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAA 203
+ +IE L + +T+ NGI AGH+LG+A + I ++++GD R + L+
Sbjct: 138 LKQIETLPYQKTLNFNGISIRFLDAGHILGSATVEIKINNKTIVFSGDIGRTGNPILKDP 197
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIRE--KRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
+P D ++ESTYG +LH +N+ E K I T + G V+IPAFA+GR Q+L
Sbjct: 198 -IPPTEADYLVLESTYGNRLH--KNLEESIKELIQAIKDTFKKEGNVIIPAFAVGRTQDL 254
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY-ILSMNERIRN-QFANSNPFKFKH 319
L IL++ I +Y SPLA++ +Y ++ L +E +R + N + K
Sbjct: 255 LYILNK-SVRQGILEPIDVYLDSPLAEEATRIYLSHPELFDDEALREMRHPNRSSIKLHF 313
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC--VIPGYVVEGTLAK 377
I + + + V+ + G+ G R ++ ++ + + C + G+ +GTL +
Sbjct: 314 IKSVEESKKLNTINSKAVIIAGSGMCQG-GRIIYHLYHNIYREQCSIIFAGFQAKGTLGR 372
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL-MPPNIILVHGE 432
I+ KEV ++ G P+ +++ I FSAHAD + +LK + P I +VHGE
Sbjct: 373 KIVDGEKEVLIL-GKMLPVKAKIYTIGGFSAHADRDELLEWLKAIKTKPEIFIVHGE 428
>gi|359414339|ref|ZP_09206804.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
gi|357173223|gb|EHJ01398.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
Length = 863
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 214/443 (48%), Gaps = 18/443 (4%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAID 77
+E + I LG EVG S + + K IL D GI + S ++P F I + +D
Sbjct: 11 KEWSYININFLGGALEVGGSSILVKINNKNILLDAGIRQSAS-KDSVPNFRAIQNYGGLD 69
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFD 136
++I+H HLDH LP + K + +++M + TK + ++LL D +K+ + E L+
Sbjct: 70 AIIISHAHLDHIGCLP-IISKEYPEAKIYMNNMTKDLVRVLLYDSLKIMNNRDAEIPLYA 128
Query: 137 EQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ ++++I +++ + I Y AGH+ GA+ + + Y+GD+S
Sbjct: 129 EGDVVSTLNRIFTINYEVKFPIFEDIHITFYNAGHIAGASCVYIQSKEGALFYSGDFSVF 188
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
R + +LP+ PD+ I+ESTYG +LH R I EK D+++ G+++IPAFAL
Sbjct: 189 SQRTVEGTKLPRLRPDVAILESTYGDKLHSNREIEEKALIDIVNECSENNGKMIIPAFAL 248
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI-RNQFANSNP 314
GRAQE++LIL + N I I Y + + VY+ L + + + P
Sbjct: 249 GRAQEVILIL-KGAINKGSLKKIKI-YVDGMVRDVNRVYKNNPLYLRNSLGKKVLRGVEP 306
Query: 315 FKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F ++I + D+ D+ P V+++S G L G S + + VI GY
Sbjct: 307 FYDENIIEVKQTDNRQDILEQKEPVVIISSSGMLTGGPSTFYAEKIAPMENGYIVITGYQ 366
Query: 371 VEGTLAKTII------SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
E + + ++ E +NGL P+ +V I SAH+D + ++ +
Sbjct: 367 DEESPGRKVLELMETDEESDRYLNINGLNIPVKCKVKKIGLSAHSDKNEIKGVIERISAR 426
Query: 425 NIILVHGESHEMGRLKTKLMTEL 447
NIILVHG + L ++ E
Sbjct: 427 NIILVHGNEEVVRSLGKEISNEF 449
>gi|304317834|ref|YP_003852979.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779336|gb|ADL69895.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 820
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 131/444 (29%), Positives = 220/444 (49%), Gaps = 24/444 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G +EVG SC ++ GK IL DCGI + S LP F I + +DV++I+H H+DH
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMS-SSKDNLPDFQHIQENGGVDVIVISHAHMDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + +++MTHA K + ++LL D +K+ + E + E + +++I
Sbjct: 66 IGALP-IISRIYPDAKIYMTHAAKDLTRVLLYDSLKIMEREAEIPAYAEIHVKEMLNRII 124
Query: 149 VLD----FHQTVEVNGIKFWCYTAGHVLGAA-MFMVDIAGVRVLYTGDYSREEDRHLRAA 203
F ++ + +K Y+AGH+ GAA +++V G Y+GD+SR + A
Sbjct: 125 CHTPGHTFSPFLDAD-LKVTFYSAGHIAGAASIYIVGNEG-SFFYSGDFSRFRQNTIEGA 182
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+P+ PD+ ESTYG +LH R + E R + I S + GG+VLIPAFALGRAQE++L
Sbjct: 183 SIPKLRPDVAFFESTYGDKLHANRELEESRLVEKIGSVVKNGGKVLIPAFALGRAQEIIL 242
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKFKHISP 322
IL + + + N + Y + K +Y+ + E + + F F ++ P
Sbjct: 243 ILKK--AINKGMINTKV-YVDGMVKDICRIYKLNPNYLRENLAKKIFKGGEIFFDDNVMP 299
Query: 323 LNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT-----L 375
++ + ++ P V+++S G L G S+ + D+KN I GY E + L
Sbjct: 300 VDIPEMREEIIKEPCVIVSSSGMLTGGPSQWYAEKLAGDEKNLIAITGYQDEESPGRRLL 359
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
T + + + + V SAHAD ++ +F+ L P + L+HG+
Sbjct: 360 ELTDEKDDDKKLKLGDKEIQVKCAVDKFGLSAHADMSEILSFVNFLYPKKVFLIHGDPDV 419
Query: 436 MGRLKTKLMTELADCNTKIITPKN 459
+ L ++ D T + P+N
Sbjct: 420 IDFLGREVQR---DIRTDVYVPQN 440
>gi|284161558|ref|YP_003400181.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
gi|284011555|gb|ADB57508.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
Length = 631
Score = 182 bits (461), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 135/438 (30%), Positives = 219/438 (50%), Gaps = 22/438 (5%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
+ P+ + +T LG EVGRSC + IL +CGI+ + + L Y EI P
Sbjct: 168 NRPILHADKWVRVTFLGGAREVGRSCYLLQTPNSKILVECGINVSGNQPPYL-YIPEIQP 226
Query: 74 -SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
+ID ++ITH HLDH +P K ++G V++T T+ + LL D+++V+
Sbjct: 227 LDSIDAVVITHAHLDHCGLVPVLF-KYGYRGPVYLTPPTRDLMVLLQLDFIEVASREGTT 285
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYT 189
+ ++ I ++ LD+ ++ ++ Y AGH+LG+A+ F + + +T
Sbjct: 286 IPYESHWIRTALKHCITLDYGVVTDIAPDVRLTFYNAGHILGSAIAHFHIGEGLYNIAFT 345
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYG-VQLHQP-RNIREKRFTDVIHSTISQGGR 247
GD+ E R AE + I+E+TYG Q QP R E+ +++ TIS+GG+
Sbjct: 346 GDFKFERTRLFDKAETNFPRLEALIMEATYGGSQDFQPSRKEAEENLIRIVNETISKGGK 405
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
VLIPAFA+GR+QE++++L+E + +P+Y + + A++ Y +N +R+
Sbjct: 406 VLIPAFAVGRSQEVMIVLEEAIRTK-KIDEVPVYIDG-MIYEATAIHTAYPEYLNAHLRD 463
Query: 308 QFANS--NPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
+ NPF F + SP + P V++++ G L G + F D+K
Sbjct: 464 LIFHQGINPFISESFVRVDSPSKRQEVIDSSEPCVIISTSGMLNGGPVMEYFRALAGDEK 523
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTL-MNGL--TAPLNMQVHYI-SFSAHADYAQTSTF 417
N V GY EGTL + I KEV ++G +NM+V + FS H+D Q +
Sbjct: 524 NTIVFVGYQAEGTLGRRIQKGWKEVPFTVDGRREVVKVNMRVETVDGFSGHSDRRQLMNY 583
Query: 418 LKEL--MPPNIILVHGES 433
+K L P II VHGE
Sbjct: 584 VKALSDKPEKIITVHGEE 601
>gi|119872614|ref|YP_930621.1| beta-lactamase domain-containing protein [Pyrobaculum islandicum
DSM 4184]
gi|119674022|gb|ABL88278.1| beta-lactamase domain protein [Pyrobaculum islandicum DSM 4184]
Length = 640
Score = 181 bits (460), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 143/475 (30%), Positives = 231/475 (48%), Gaps = 37/475 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + +T LGA EVGRS + +S IL DCG+ P P D +D
Sbjct: 173 PVVKEG-AITVTFLGAAMEVGRSAILVSTTESNILLDCGLKPGQYD-EDFPLLDAVDIDR 230
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP FL K ++G V+MT TK +LL DY+++ + + F
Sbjct: 231 LDAVVLTHAHMDHVGCLP-FLYKYGYRGPVYMTDPTKYQTFILLMDYIELKEREGLEPAF 289
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
D+ + LD+ + ++ +K Y AGH +G+AM + I R +LYTGD+
Sbjct: 290 SRADVESVIYHTITLDYEEVTDIAPDVKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 349
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR E + +S+GG+VLI
Sbjct: 350 KYGKTRLLNRAVSKFKRVEMLIMESTYGGRDDVQPPRVEAENALAKHVAEAVSRGGKVLI 409
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L IL++ +P+Y + + A Y Y +N + + +
Sbjct: 410 PAFSTGRGQEILYILNKMIEGGL-IPRVPVYVDGMIVETLNA-YLMYPHYLNPEVAEEIY 467
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
NPF + K + + I+ + + P+V++A G L G F
Sbjct: 468 GGVNPFTTSGSVVIVDRAKRVE--DRINQVAKIAQSEEPAVIIAPHGMLNGGPVVDYFSQ 525
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMN--GLTAPLNMQVHYIS---FSAHAD 410
D +N V Y EGTL + I++ +E T+ + G + + +++ +S FS H+D
Sbjct: 526 LAHDPRNKLVFVSYQAEGTLGRRILNGEREFTIRSLVGGESKVEVRMEVVSIPGFSGHSD 585
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
+ +++ E P I+LVHGE ++ L T + EL T II PK + +
Sbjct: 586 RRELMKYVEHIEPKPKKIVLVHGEPSKIISLATSI--ELKYKITTII-PKVGERI 637
>gi|14600511|ref|NP_147027.1| exonuclease [Aeropyrum pernix K1]
gi|5103572|dbj|BAA79093.1| putative exonuclease [Aeropyrum pernix K1]
Length = 420
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 129/454 (28%), Positives = 215/454 (47%), Gaps = 51/454 (11%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG+G EVGR+ + + G+ +L D G++ + P ++ P +D L++TH H
Sbjct: 4 IRILGSGREVGRAAILVESGGRGLLLDYGVNFDENDRPVFP--GDVRPRDLDGLVLTHSH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH + PY K VF T T + +LLL D +K++ + +DE+ + +
Sbjct: 62 LDHIGAAPYLYVSQGPK--VFGTRVTLHVSRLLLYDMIKLNGAYLP---YDERSVEDMLG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
E +D+ + E F + +GH+ G+ +V++ G R+LYT D + E + + A L
Sbjct: 117 TAEYIDYGREYEAGRFAFKTFYSGHIPGSTAVLVEVDGRRILYTSDVNVIETKLVGPARL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
D+ I+ESTYG H PR++ E+RF + + +SQGG VL+PAF++ R QE+ +IL
Sbjct: 177 EGAKADVVIVESTYGDSDHPPRSVSEERFYNAVMDVVSQGGTVLVPAFSVSRGQEIAMIL 236
Query: 266 DEYWSNHPEFHN------IPIYYASP-------LAKKCMAVYQTYILSMNERIRNQFANS 312
E +P + + IY A+P L K M+ ++ I+S + R F
Sbjct: 237 AERGFEYPVWLDGMIRQVAEIYAANPRFILNPGLLMKVMSEFR--IVSGWQDRRRAFKK- 293
Query: 313 NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
P V++AS G L+ G S ++KKN + Y
Sbjct: 294 ---------------------PGVIIASAGMLKGGPSLYYARKMATNKKNGIFMVSYQAP 332
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP-PNIILVHG 431
GT + I+ E + P+ +V + FS+H D + L+ + ++LVHG
Sbjct: 333 GTPGRMILEE----GVFGEERIPVLARVEWFDFSSHIDQSGIIKLLRSVNGVEKVVLVHG 388
Query: 432 ESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ LKT++ EL ++ TP N +E+
Sbjct: 389 DPKAQEALKTRIREELG--IREVETPGNMDVLEV 420
>gi|448671829|ref|ZP_21687634.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
gi|445764965|gb|EMA16108.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
Length = 640
Score = 181 bits (459), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 131/477 (27%), Positives = 231/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTADEDWVRLTTLGCCREVGRASFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P++ID +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSIDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLKDVINEAYE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+ G++LIPAFA+GR+QEL+L+L+E + +P+Y + ++ A++ Y + E
Sbjct: 409 KEGKILIPAFAVGRSQELMLVLEEAMRKG-DIPTMPVYLDG-MIREATAIHTAYPEYLRE 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + + ++ D D +D P++++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFAQVDGGDEMRRDITDDEPAIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
SD N GY EGTL + I E+TL + + P L M V + FS HAD
Sbjct: 527 SDPDNTMAFVGYQAEGTLGRQIQRGQDEITLGD-TSGPRAERVSLKMGVETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG+ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDESSTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|440781793|ref|ZP_20960021.1| metallo-beta-lactamase family protein [Clostridium pasteurianum DSM
525]
gi|440220511|gb|ELP59718.1| metallo-beta-lactamase family protein [Clostridium pasteurianum DSM
525]
Length = 511
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/435 (30%), Positives = 218/435 (50%), Gaps = 40/435 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA V SC + KTIL DCG++ DP +D ++++H H+DH+
Sbjct: 7 GAAGCVTGSCHILRVSNKTILLDCGLYQGKDEKEIGNDGFNFDPKKVDYVILSHAHIDHS 66
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+P L K FKG+VF T+AT+ + +L D + ++ VE +++ R +D IE
Sbjct: 67 GRIP-LLYKKGFKGQVFCTNATRDLCSAMLVDSGYIQEMEVE--WKNKKRRRRGLDAIEP 123
Query: 150 L----------------DFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG-----VRVL 187
L + T+E+ +G K +GH+LG+A + I V+++
Sbjct: 124 LYTANMARLSMYLFTGIPYGTTIEIFDGFKIRFRDSGHLLGSAFVELFIREEEKDEVKIV 183
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
YTGD +R + ++ D I+E+TYG +LH N + R TD+I T ++GG
Sbjct: 184 YTGDVGNVNIPIMRDPTILDYA-DYLIMETTYGNRLHDNLNSQLHRLTDIIKETFARGGN 242
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
V+IP+FA+GR QE+L L + N E +N+ I+ SPLA + +++ Y +E +
Sbjct: 243 VIIPSFAVGRVQEILYELSKLRRNR-ELNNLMIFVDSPLAAESTRIFEKYSECFDEEAKR 301
Query: 308 QFANS-NPFKFKHISPLNSIDDFSDVGP----SVVMASPGGLQSGLSRQLF--DIWCSDK 360
FA+ NP +F+ + NSI+D S + +V++++ G ++G + ++W K
Sbjct: 302 DFASGYNPLRFEGVIFTNSIEDSSKINKIQSGAVIISASGMCEAGRIKHHLKHNLW--RK 359
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLK 419
+ + V GY EGTL I+S K+V + G +N ++ I S HAD +++
Sbjct: 360 ECSIVFVGYQAEGTLGGNILSGAKKVKIF-GEEIAVNASIYDIEELSGHADRNGLIKWME 418
Query: 420 EL--MPPNIILVHGE 432
P I LVHGE
Sbjct: 419 SFSKKPEEIFLVHGE 433
>gi|332799023|ref|YP_004460522.1| beta-lactamase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696758|gb|AEE91215.1| beta-lactamase domain protein [Tepidanaerobacter acetatoxydans Re1]
Length = 831
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/471 (28%), Positives = 224/471 (47%), Gaps = 32/471 (6%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G EVG SC ++ GK IL DCGI S LP F I + ID ++I+H H DH
Sbjct: 7 GGAQEVGASCYLVTIDGKNILLDCGIRLT-SSKDTLPDFRLIQENGGIDAIIISHAHTDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + ++MTH +K + ++LL D +K+ + E ++ E + + +
Sbjct: 66 TGALPA-ISRQFPNALIYMTHMSKDLTRVLLYDSLKIMEREPEIPIYAENHVQEMLGRTV 124
Query: 149 VLDFHQTVEV---NGIKFWCYTAGHVLGAA-MFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
+ + ++ + I Y+AGH+ GAA ++MV G + Y+GD S + A
Sbjct: 125 CFSPNFSFKLFSDSNITATFYSAGHIAGAASIYMVGSEG-SLFYSGDISGFRQNTIEGAT 183
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
+P+ PD+ I ESTYG +LH R + E+R + I+ I GG+VL+PAFALGRAQE++LI
Sbjct: 184 VPKLRPDVAIFESTYGDKLHANRQVEEQRLIESINEVIINGGKVLVPAFALGRAQEVILI 243
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFANSNPFKFKHIS 321
L + N + + PI Y + K +Y+ Y+ S + F + F ++S
Sbjct: 244 LKKAM-NRGQLLSCPI-YVDGMVKDICRIYKLNPNYLRS--NLAKKVFRGVDIFYDDNVS 299
Query: 322 PLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
P+ + + ++ P V++AS G L G S+ +++ N + GY E + K
Sbjct: 300 PVANPEFRKEILESKNPCVIIASSGMLTGGPSQMYAQSLATNENNLIAVTGYQDEESPGK 359
Query: 378 TIIS---------EPKEVTLMNG-LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
++ + ++ T+ G + +V SAHAD + L P I
Sbjct: 360 DLLKIIETDDDADKKQDRTIKLGEREISVKCRVGKFGLSAHADKMEILNIANNLYPRRIF 419
Query: 428 LVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGR 478
LVHG + L ++ D N I P+N + E+ + + I +
Sbjct: 420 LVHGNPEAINSLGKEIQ---KDINGFIYAPRNGEQYEINIKKPRKQRGISK 467
>gi|257388099|ref|YP_003177872.1| beta-lactamase [Halomicrobium mukohataei DSM 12286]
gi|257170406|gb|ACV48165.1| beta-lactamase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 640
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 130/474 (27%), Positives = 230/474 (48%), Gaps = 38/474 (8%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTDDADWVRLTTLGCCREVGRAAFILSTPDSRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P +ID +++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPQSIDAVVLTHAHLDHSALIP-ILFKYGYDGPIYTTAPTRDLMGLLQLDYLDVAAKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ +++ ++ IK + AGH+LGAA+ F + V
Sbjct: 291 RAPPYESQQVRDALKHTIPVEYGNVTDIAPDIKLTMHNAGHILGAAVTHFHIGDGHYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD + R L A + P+ + ++ESTYG + + E+ I+
Sbjct: 351 FSGDIHYTDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQADSERVLKKAINEAHD 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GG++LIPAFA+GR+QEL+L+L+E + + +P+Y + ++ A++ Y + +
Sbjct: 409 RGGKILIPAFAVGRSQELMLVLEEAMRSG-DIPTVPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPF---KFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF +F+ + + D +D P +++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFQQVDGGQEMRQDIADDEPCIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
SD N + GY EGTL + I E+TL +G + P L M++ + FS HAD
Sbjct: 527 SDPDNTMMFVGYQAEGTLGRQIQRGQDEITLSDG-SGPRAERVSLKMEIETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
TF++ + P +I VHG+ +L + L + N + PKN ++
Sbjct: 586 RQGLETFVETMHPRPEKVICVHGDEQSTNQLSSALYQKF---NMRTYNPKNLET 636
>gi|327401049|ref|YP_004341888.1| KH-domain/beta-lactamase-domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316557|gb|AEA47173.1| KH-domain/beta-lactamase-domain protein [Archaeoglobus veneficus
SNP6]
Length = 634
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 127/428 (29%), Positives = 216/428 (50%), Gaps = 21/428 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
+T LG EVGRSC + IL DCG++ + + Y E+ P +ID ++ITH
Sbjct: 182 VTFLGGSREVGRSCYLLQTPESKILIDCGVNVSNIQHSPYLYVPEVQPLDSIDAVVITHA 241
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH +P L K +KG ++MT T+ + LL D+++V+ ++ I ++
Sbjct: 242 HLDHCGLVP-ILYKYGYKGPIYMTPPTRDLMVLLQLDFIEVAAREGTPTPYESSYIREAL 300
Query: 145 DKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLR 201
LD+ +++ ++ Y AGH+LG+A+ F + + +TGD+ E R
Sbjct: 301 KHTIPLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGLYNIAFTGDFKFERTRLFD 360
Query: 202 AAELPQFSPDICIIESTYG-VQLHQP-RNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
AE + I+E+TYG Q QP R E++ +I+ T+ GG+VLIP FA+GR+Q
Sbjct: 361 RAETNFPRLEALIMEATYGGSQDFQPTRREAEEKLISIINETLKNGGKVLIPTFAVGRSQ 420
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKF 317
E+++ L+E N + + +Y + + A++ Y +N +R+ + NPF
Sbjct: 421 EVMIALEEAIRNK-KLEEVTVYLDG-MIHEATAIHTAYPEYLNASLRDLIFHHGINPFIS 478
Query: 318 KHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
+ ++S +V PS+++A+ G L G + F D+KN + GY EG
Sbjct: 479 ESFVKVDSASKRQEVIEEESPSIILATSGMLNGGPVMEYFKRLAGDEKNTLIFVGYQAEG 538
Query: 374 TLAKTIISEPKEVTL-MNGL--TAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNII 427
TL + I +EV NG +NM++ + FS H+D Q ++++ L P +I
Sbjct: 539 TLGRRIQKGWREVPFPSNGKREVVNVNMRIETVDGFSGHSDRKQLMSYVRALSSKPEKVI 598
Query: 428 LVHGESHE 435
VHG+ ++
Sbjct: 599 TVHGDENK 606
>gi|448685512|ref|ZP_21693504.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
gi|445782123|gb|EMA32974.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
Length = 640
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 131/477 (27%), Positives = 231/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P+++D +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSLDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+ T
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLKDVINETYE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G+VLIPAFA+GR+QEL+L+L+E E +P+Y + ++ A++ Y + +
Sbjct: 409 NDGKVLIPAFAVGRSQELMLVLEEAMRKG-EIPTMPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + ++ D D +D P++V+ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFEQVDGGDEMRQDIADDEPAIVLTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
S+ N GY EGTL + I E+TL + + P L + V + FS HAD
Sbjct: 527 SEPDNTMAFVGYQAEGTLGRQIQRGQDEITLGD-TSGPRAERVSLRLNVETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG++ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDASTTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|325969789|ref|YP_004245981.1| beta-lactamase [Vulcanisaeta moutnovskia 768-28]
gi|323708992|gb|ADY02479.1| beta-lactamase domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 650
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 135/455 (29%), Positives = 231/455 (50%), Gaps = 28/455 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV ++ ++ +T LGA EVGRS + + K +IL DCG+ P+ SG A P DE+D
Sbjct: 185 PVYKDA-RITVTGLGAQMEVGRSAILIRTKESSILLDCGVKPSSSGDEA-PLLDELDLDT 242
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++ITH H+DH +PY K +KG V+MT TK + ++LLTDY++ ++ +
Sbjct: 243 LDAIVITHAHMDHIGFVPYLF-KYGYKGPVYMTEPTKYLMEVLLTDYIEQAESEGRVPPY 301
Query: 136 DEQDINRSMDKIEVLDF--HQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGD 191
QD+ +++ L++ H T K + AGH +G+A+ + I ++YTGD
Sbjct: 302 SRQDLAQALYHTITLNYADHPTDISPDTKLMLFDAGHEVGSAVVHLHIGNGLYNIIYTGD 361
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVL 249
R L A ++ I+ESTYG + + PR E++ +++ T+ G+VL
Sbjct: 362 MKYGPTRLLNPAHNKFKRAELLIMESTYGGKEDIQPPRQESEQKLVELVKHTVEHDGKVL 421
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ- 308
IP F+ GRAQE+LL+L+E +N + +PI Y + + + V+ + +N +R
Sbjct: 422 IPVFSTGRAQEILLVLNEAINNK-QLSKVPI-YVDGMVLETLNVHLMFPDYLNRTLRELI 479
Query: 309 FANSNPFKFKHISPLNSIDDFSDVG----------PSVVMASPGGLQSGLSRQLFDIWCS 358
+ NPF +++ P+ D P+V++A G L G F
Sbjct: 480 YDGVNPFLSEYVKPIERARDPEKRKEQVMEILQGPPAVILAPHGMLNGGPIMDYFVHAAE 539
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLM---NGLTAPLNMQVHYI-SFSAHADYAQT 414
D++N + Y E T+ + I +++T+ + +T + M+V I FS H+D Q
Sbjct: 540 DERNMLLFVSYQAENTIGRRIQQGERKLTVRYYSDRVTLDIKMKVDSIPGFSGHSDRRQL 599
Query: 415 STFLKELMPP--NIILVHGESHEMGRLKTKLMTEL 447
+++ + P ++LVHGE ++ L L +L
Sbjct: 600 FNYVRNMEPKPHKVMLVHGEPAKIMNLALALELQL 634
>gi|345018855|ref|YP_004821208.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344034198|gb|AEM79924.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 829
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/449 (28%), Positives = 217/449 (48%), Gaps = 22/449 (4%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHFHLDH 88
G NEVG SC ++ +GK IL DCGI + S LP F I + +D ++++H HLDH
Sbjct: 7 GGANEVGASCYLINLEGKNILLDCGIRMS-STKDNLPDFRLIQEHGGVDAIIVSHAHLDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+LP + + + +++MTHATK + ++LL D +K+ + E ++ E + +D+
Sbjct: 66 TGALP-IISRMYPQAKIYMTHATKDLTRVLLYDSLKIMERESEIPIYAENHVKDMLDRAL 124
Query: 149 VLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
T + IK Y AGH+LGAA + V Y+GD+S + A +
Sbjct: 125 CYTPGYTFTPFPDSQIKVTLYPAGHILGAASVYITSEEGSVFYSGDFSGFRQNTIEGAFI 184
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P+ PD+ I ESTYG +LH R + E R + + S I++GG+V+IPAFALGRAQE++LIL
Sbjct: 185 PKLRPDVAIFESTYGDKLHANRELEETRLIEKVSSIINEGGKVIIPAFALGRAQEIILIL 244
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF-KHISPLN 324
+ + + Y + ++ VY+ + + + + N F ++ +
Sbjct: 245 KKAINKGILKTKV---YVDGMVREVCRVYKLNPNYLRQNLAKKIFKGNDIFFDDNVIAVE 301
Query: 325 SIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS- 381
+ ++ V+++S G + G S+ + D+KN I GY E + + ++
Sbjct: 302 KPEMREEIIKESCVILSSSGMITGGPSQWYVEKLAQDEKNLIAITGYQDEESPGRRLLDI 361
Query: 382 -----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
E +++ + + + + SAHAD + L P I LVHG+ +
Sbjct: 362 MEESPENRKIKI-DDKEILIKCSIDKFGLSAHADMGEILALANSLYPKKIFLVHGDPEII 420
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEM 465
L ++ D +++ P N E+
Sbjct: 421 NFLGKEVQ---KDLKSEVYIPSNGDIYEI 446
>gi|126465835|ref|YP_001040944.1| beta-lactamase domain-containing protein [Staphylothermus marinus
F1]
gi|126014658|gb|ABN70036.1| beta-lactamase domain protein [Staphylothermus marinus F1]
Length = 652
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 237/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM---AALPYFD--EIDPSAIDVLL 80
IT LG EVGRS + + + +L D GI+ +G A P+ D +++ S +D ++
Sbjct: 189 ITALGGFMEVGRSAILVETRESRVLLDLGINVG-AGTDYDRAYPFIDIDQLNLSELDAVI 247
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH +P L K ++G +++T T+ + +++ D ++V++ + + + E+D+
Sbjct: 248 VTHAHLDHIGLVP-LLYKYGYRGPLYVTKPTRELMVIMIKDLIEVTQREGKYLPYSEKDL 306
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREED 197
++ L++ +V IK Y AGH+LG+A+ + I G+ ++YTGD+
Sbjct: 307 MTTILHTIPLEYGDVTDVAPDIKVTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYAPT 366
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
R L AE + I+ESTYG Q R E ++ TI + G VLIP FA+GR
Sbjct: 367 RLLNRAEDKFPRVETLIMESTYGATRQQSRREAEAELIRIVKKTIERKGIVLIPVFAVGR 426
Query: 258 AQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNP 314
QE++L+L++ S P+ + L + A++ Y +N I+ + NP
Sbjct: 427 GQEIMLVLNDAISKGLIPKVD----VFIEGLVNEVTAIHTQYPEYLNRNIKEMIYRGENP 482
Query: 315 FK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
F F I + D + PS+++A+ G L G + + + SD +N+ V GY
Sbjct: 483 FTADYFHIIESGTARPDIVETKPSIILATSGMLTGGPAVEYLKLIASDPRNSLVFVGYQA 542
Query: 372 EGTLAKTIISEPKEV-TLMNGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKELMPP--N 425
EGTL + I +E+ T+++ +N++V+ I FS H+D ++ +++ + P N
Sbjct: 543 EGTLGRRIKDGMRELQTVVDNKVEIIRINLEVYSIDGFSGHSDQSELLRYVRNISPKPRN 602
Query: 426 IILVHGESHE---MGRLKTKLMTELA---DCNTKIITPKNCQSVEM 465
IIL HGE + RL +K++ + NT + TP S+ +
Sbjct: 603 IILNHGEPSAIMTLARLVSKIIRNPSTGYGANTMVYTPHLLDSIHL 648
>gi|297527491|ref|YP_003669515.1| KH-domain/beta-lactamase-domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256407|gb|ADI32616.1| KH-domain/beta-lactamase-domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 647
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 235/465 (50%), Gaps = 30/465 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG--MAALPYFD--EIDPSAIDVLLI 81
IT LG EVGRS + + + +L D GI+ A P+ D +++ S +D +++
Sbjct: 184 ITALGGFMEVGRSAILVETRESRVLLDLGINVGAGTDYNRAYPFIDIDQLNLSELDAVIV 243
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDIN 141
TH HLDH +P L K ++G +++T T+ + +++ D ++V++ + + + E+D+
Sbjct: 244 THAHLDHIGLVP-LLYKYGYRGPLYVTKPTRELMVIMIKDLIEVTQREGKYLPYSEKDLM 302
Query: 142 RSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDR 198
++ L++ +V IK Y AGH+LG+A+ + I G+ ++YTGD+ R
Sbjct: 303 TAILHTIPLEYGDVTDVAPDIKVTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYAPTR 362
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
L AE + I+ESTYG Q R E ++ TI + G VLIP FA+GR
Sbjct: 363 LLNRAEDKFPRVETLIMESTYGATRQQSRREAEAELIKIVKKTIERKGIVLIPVFAVGRG 422
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPF 315
QE++L+L++ +N P+ + L + A++ Y +N I+ + NPF
Sbjct: 423 QEIMLVLNDAINNGLIPKVD----VFIEGLVNEVTAIHTQYPEYLNRNIKEMIYRGENPF 478
Query: 316 K---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F I + D + PS+++A+ G L G + + + SD +N+ V GY E
Sbjct: 479 TADYFHIIEGGTARPDIVETRPSIIIATSGMLTGGPAVEYLKLIASDPRNSLVFVGYQAE 538
Query: 373 GTLAKTIISEPKEV-TLMNGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NI 426
GTL + I +E+ T+++ +N++V+ I FS H+D ++ +++ + P NI
Sbjct: 539 GTLGRRIKDGMRELQTVVDNKVEIIRINLEVYSIDGFSGHSDQSELLRYVRNISPKPRNI 598
Query: 427 ILVHGESHE---MGRLKTKLMTELAD---CNTKIITPKNCQSVEM 465
IL HGE + RL +K++ NT + TP S+ +
Sbjct: 599 ILNHGEPSAIMTLARLVSKIIRNPNSGYGANTMVYTPHILDSIHL 643
>gi|397665132|ref|YP_006506670.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395128543|emb|CCD06759.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 219/451 (48%), Gaps = 43/451 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A+LP IDP ID ++
Sbjct: 3 LTFLGATQTVTGSKYLLTIDSKKILIDCGLFQGYKELRLRNWASLP----IDPRDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SK 127
ITH H+DH LP L K F+G+++ T TKA+ +LL D + SK
Sbjct: 59 ITHAHIDHTGYLP-LLVKNGFQGKIYATPGTKALCAILLPDSGHLQEEEARLANKYGFSK 117
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
L+ E+D ++ E +DF+ ++ NG F + AGH++GAAM + + +
Sbjct: 118 HKPALPLYTEKDARTALKHFETVDFNAPHQLFNGFSFEFHRAGHIVGAAMIKIKTSKCSL 177
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
L++GD R D ++A P D I+ESTYG +LH + + VI++TI +GG
Sbjct: 178 LFSGDVGRPYDPVMKAPT-PIQEADYLIMESTYGDRLHDATDPLPQ-MGQVINTTIKRGG 235
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS--MNER 304
V+IPAFA+GRAQ LL + + ++P++ SP+A + TY +NE
Sbjct: 236 SVVIPAFAVGRAQSLLYFIYQLKQKGEIHKDVPVFLDSPMAINATHLLCTYKEDHRLNEE 295
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ N+ + +N+ ++ ++ P +++A+ G Q G + D
Sbjct: 296 QCHGLCNAATY-------INTPEESKELDRHKMPQIIIAASGMAQGGRIVHHLKAFAPDP 348
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLK 419
K+ + G+ GT I++ +EV + +G P+ +V + S SAHADY + +LK
Sbjct: 349 KSTLLFTGFQAGGTRGARIVNGEREVKI-HGSMIPIRAKVVVMSSTSAHADYQELLGWLK 407
Query: 420 ELM--PPNIILVHGESHEMGRLKTKLMTELA 448
+ P + + HGE H LK K+ +
Sbjct: 408 HFIRPPKKVFITHGEPHSAQSLKDKIEQQFG 438
>gi|388455603|ref|ZP_10137898.1| metallo-beta lactamase [Fluoribacter dumoffii Tex-KL]
Length = 453
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 135/451 (29%), Positives = 219/451 (48%), Gaps = 43/451 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A+LP IDP ID ++
Sbjct: 3 LTFLGATQTVTGSKYLLTIDSKKILIDCGLFQGYKELRLRNWASLP----IDPRDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SK 127
ITH H+DH LP L K F+G+++ T TKA+ +LL D + SK
Sbjct: 59 ITHAHIDHTGYLP-LLVKNEFQGKIYATPGTKALCAILLPDSGHLQEEEARLANKYGFSK 117
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
L+ E+D ++ E +DF+ ++ NG F + AGH++GAAM + + +
Sbjct: 118 HKPALPLYTEKDARTALKHFETVDFNAPHQLFNGFSFEFHRAGHIVGAAMIKIKTSKCSL 177
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
L++GD R D ++A P D I+ESTYG +LH + + VI++TI +GG
Sbjct: 178 LFSGDVGRPYDPVMKAPT-PIQDTDYLIMESTYGDRLHDATDPLPQ-MGQVINTTIKRGG 235
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS--MNER 304
V+IPAFA+GRAQ LL + + ++P++ SP+A + TY +NE
Sbjct: 236 SVVIPAFAVGRAQSLLYFIYQLKQKGEVHKDVPVFLDSPMAINATHLLCTYKEDHRLNEE 295
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ N+ + +N+ ++ ++ P +++A+ G Q G + D
Sbjct: 296 QCHGLCNAATY-------INTPEESKELDRHKMPQIIIAASGMAQGGRIVHHLKAFAPDP 348
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLK 419
K+ + G+ GT I++ +EV + +G P+ +V + S SAHADY + +LK
Sbjct: 349 KSTLLFTGFQAGGTRGARIVNGEREVKI-HGSMIPIRAKVVVMSSTSAHADYQELLGWLK 407
Query: 420 ELM--PPNIILVHGESHEMGRLKTKLMTELA 448
+ P + + HGE H LK K+ +
Sbjct: 408 HFIRPPKKVFITHGEPHSAQSLKDKIEQQFG 438
>gi|296109715|ref|YP_003616664.1| RNA-metabolising metallo-beta-lactamase [methanocaldococcus
infernus ME]
gi|295434529|gb|ADG13700.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus
infernus ME]
Length = 419
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 123/415 (29%), Positives = 216/415 (52%), Gaps = 39/415 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +++G SCV + + + DCG+ P +P D+ P L+++H HLDH
Sbjct: 8 GGCHQIGMSCVEVIGEKDRVFLDCGMMP---DTGEIPKIDDNAP-----LIVSHAHLDHC 59
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ FK +++ T T + + D + + K F E+DI R++ +E
Sbjct: 60 GAIPFY----NFK-KIYCTPPTADLMFITWRDTLNLQKS------FKEEDIQRALSSVEC 108
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++++ ++ +KF Y AGH+LG++ ++I G R+LYTGD + R +RAA+
Sbjct: 109 LNYYEEKKIGENLKFKLYNAGHILGSSSIYLEIDGKRILYTGDINESMQRTVRAADTDID 168
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
DI IIE+TYG + + R + E+ + + TI +GG+V+IP FA+GRAQE+LL+L+
Sbjct: 169 DIDILIIEATYGSPLDIKPARKVLERELVNEVKETIERGGKVIIPVFAVGRAQEILLVLN 228
Query: 267 EY-WSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHIS 321
Y S E F + + +A+ ++Y +Y +N +++N NP F ++
Sbjct: 229 NYIRSGELEAKIFTDGSLIHAT-------SIYLSYTDWLNPKLKNLIETGINP--FGNVE 279
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ F P V++++ G +Q G + + D KN ++ GY EGTL + +
Sbjct: 280 KADESRIFKKDEPCVIVSTSGMVQGGPVLKYLRL-LKDPKNKLILTGYQAEGTLGRALEE 338
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
KE+ P+ +V I FSAH DY ++K++ P I++HGE ++
Sbjct: 339 GIKEIKPFKN-KIPIRGEVVKIEFSAHGDYNSLVRYIKKIPKPEKAIVMHGERYQ 392
>gi|10435258|dbj|BAB14541.1| unnamed protein product [Homo sapiens]
Length = 278
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 136/246 (55%), Gaps = 27/246 (10%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
Q I M K+ + HQTV++ + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQIK---------------------VGSESVVYTGDYNMTP 161
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FALG
Sbjct: 162 DRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALG 221
Query: 257 RAQELL 262
RAQE L
Sbjct: 222 RAQEHL 227
>gi|357040399|ref|ZP_09102187.1| beta-lactamase domain protein [Desulfotomaculum gibsoniae DSM 7213]
gi|355356752|gb|EHG04536.1| beta-lactamase domain protein [Desulfotomaculum gibsoniae DSM 7213]
Length = 1084
Score = 179 bits (454), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 140/476 (29%), Positives = 224/476 (47%), Gaps = 41/476 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA----LPYFDEI-DPSAIDVLLITH 83
LG G+EVG SC + G IL D GI LP + + + +L++H
Sbjct: 6 LGGGSEVGASCNLLQMDGTNILMDAGIRMGGGAAGGPADALPDLALLQEAGGVAAVLVSH 65
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML----FDEQD 139
HLDH +LP + + ++ T T + ++LL D +K+ + E L +D
Sbjct: 66 AHLDHIGALP-LVHRAYPTVPIYATAPTVHLMRVLLADALKIMSIKAEQELECPLYDPDL 124
Query: 140 INRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
+ R ++ + +V + GIK + AGH+LGAAM ++ RVLYTGD S R
Sbjct: 125 VARMFARVVPVPMGGSVMLPGGIKASFFPAGHILGAAMLGLEGTEGRVLYTGDISAGNQR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
+ P F+P + ++E+TYG +LH R EK + IS GG LIPAFALGRA
Sbjct: 185 TISGMVAPDFAPHLLVMEATYGNRLHANRQREEKTLAQTVAEVISSGGHALIPAFALGRA 244
Query: 259 QELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN---QFANS- 312
QE++L++ + P+F PI+ + C A L+ E +R +F N+
Sbjct: 245 QEIILLILAHQQAGLIPQF---PIWVDGMVRSICQA-----YLNFPELLRGPLKRFINNG 296
Query: 313 -NPFKFK---HISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF F+ H P+ + V P+ ++AS G L G S+ +D ++A +
Sbjct: 297 GNPF-FRDKGHARPVTATPMREKVLAGAPACIIASSGMLTGGPSQFYASRLVNDPRHAII 355
Query: 366 IPGYVVEGTLAKTIIS---EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM 422
GY E + ++ +P + G+ + +V SAHAD + ++ L
Sbjct: 356 FCGYQDEESPGHKLLGLADDPDAAITLGGVETRVRCRVDQYGLSAHADAGELASLAARLR 415
Query: 423 PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAK-TIG 477
P ++LVHG+ + L LAD ++TP+N Q ++ F + +K T+G
Sbjct: 416 PRRVVLVHGDDGA----RQALSQTLADSKQSVLTPENGQWLDFSFRRSQRSKFTVG 467
>gi|352683091|ref|YP_004893615.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
gi|350275890|emb|CCC82537.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
Length = 635
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 139/453 (30%), Positives = 214/453 (47%), Gaps = 30/453 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
P+ REG + I+ LGA EVGRS + + IL DCG+ P+ P +++D
Sbjct: 168 PIVREG-AITISFLGASMEVGRSAILVDTTESKILLDCGLKPSQYE-EEFPLLEQVDLDE 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H H+DH LPY L K +KG V+MT TK + +LLTDYV++ + +
Sbjct: 226 LDAVVLSHAHMDHVGCLPY-LYKYGYKGPVYMTDPTKYLTYILLTDYVELKEREGLTPPY 284
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
+ DI M LD+ + ++ +K Y AGH +G+A+ + I R +LYTGD+
Sbjct: 285 TKSDIEALMYHTITLDYEEVTDIAPDVKLTFYDAGHEIGSALIHLHIGNGRYNILYTGDF 344
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
L A ++ I+ESTYG + + PR E I TI +GG+VLI
Sbjct: 345 KFGRTNLLNRAVNKFKRVEMLIMESTYGGRDDVQPPRIEAENTLVKNITETIERGGKVLI 404
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PAF+ GRAQE+L IL+ N PIY + + A Y Y +N + +
Sbjct: 405 PAFSTGRAQEILYILNREM-NKGSLKKAPIYVDGMIVETLNA-YLMYPHFLNREVAEEIY 462
Query: 311 NS-NPF----KFKHISPLNSIDD--------FSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
N NPF + I ++D D P V++A G L G + F
Sbjct: 463 NGINPFTSSGNIQIIERAKRLEDRINQVAKIVQDGQPGVIIAPHGMLNGGPILEYFVHLA 522
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTL----MNGLTAPLNMQVHYI-SFSAHADYA 412
D N + Y E TL + I++ ++ + M + + M V I FS H+D
Sbjct: 523 PDPANKLIFVSYQAENTLGRRILNGERDFIVRSLSMGEVKVSMKMGVLSIPGFSGHSDRR 582
Query: 413 QTSTFLKEL--MPPNIILVHGESHEMGRLKTKL 443
+ +++ L P I+L+HGE + L T +
Sbjct: 583 ELMKYIETLEPRPKKIVLIHGEPSKTISLATSI 615
>gi|448636727|ref|ZP_21675175.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
gi|445765033|gb|EMA16172.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
Length = 640
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 129/477 (27%), Positives = 231/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P+++D +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSLDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+ +
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLRDVINESYE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G+VLIPAFA+GR+QEL+L+L+E + +P+Y + ++ A++ Y + +
Sbjct: 409 NDGKVLIPAFAVGRSQELMLVLEEAMRKG-DIPTMPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + ++ D D +D P++++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFEQVDGGDEMRQDIADDEPAIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
SD N GY EGTL + I E+TL + + P L + V + FS HAD
Sbjct: 527 SDPDNTMAFVGYQAEGTLGRQIQRGQDEITLGD-TSGPRAERVSLRLNVETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG++ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDASTTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|406947343|gb|EKD78285.1| hypothetical protein ACD_41C00377G0004 [uncultured bacterium]
Length = 447
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 130/435 (29%), Positives = 213/435 (48%), Gaps = 21/435 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLLITH 83
IT LGA V S + + +L DCG+ +DE PS I +LITH
Sbjct: 3 ITFLGACRMVTGSMYLLEHDHVKVLVDCGMIQG-EQFTEDKNYDEFSFQPSEITAVLITH 61
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFDEQD 139
H+DH +P + + F G++ THAT + L+L D V ++ E L++ D
Sbjct: 62 AHIDHCGRVPRLV-REGFAGKIISTHATLDLAYLMLEDSAHVIQMDAEQAGYPPLYEATD 120
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
+ R+ + +++HQ ++V + AGH+LG+A + ++++GD
Sbjct: 121 VERAAELFHGVEYHQAIQVGPFTIELFDAGHILGSAFIRLTAGDKTIVFSGDLGNPPVPL 180
Query: 200 LRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
L+ E LP + ++ESTYG ++H+P R+ I+ TI+ G +LIPAFAL R
Sbjct: 181 LKPTEALP--PTEYLVMESTYGNKIHEPAKERKLLLQSAIYETITLHGTLLIPAFALERT 238
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP-FKF 317
QE+L L++ H + +PI+ SPLA K +Y Y N+ R A + FKF
Sbjct: 239 QEILYELND-LVEHKDIPPVPIFIDSPLAIKATRIYPKYNRWFNQATRYLIAKGDDVFKF 297
Query: 318 KHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
+ +++ + + P V++A G +Q G R + SD +N +I GY V+G
Sbjct: 298 NGLKFTSTVQESRAILNVKAPKVILAGSGMMQGGRIRYHAKNYLSDFRNQVLIVGYQVKG 357
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM--PPNIILVH 430
+L + ++ + K V +++G + +V I ++SAHAD A+ +LK P + L H
Sbjct: 358 SLGRQLLEKAKHV-VIDGDQVEVQARVRAIGAYSAHADQAKLLAWLKSSAGHPQQVWLTH 416
Query: 431 GESHEMGRLKTKLMT 445
GE + L L T
Sbjct: 417 GEENTAQVLAGILQT 431
>gi|448681732|ref|ZP_21691823.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
gi|445767602|gb|EMA18705.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
Length = 640
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 129/477 (27%), Positives = 230/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P+++D +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSLDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+ T
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLKDVINETYE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G+VLIPAFA+GR+QEL+L+L+E + +P+Y + ++ A++ Y + +
Sbjct: 409 NDGKVLIPAFAVGRSQELMLVLEEAMRKG-DIPTMPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + ++ D D +D P++++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFEQVDGGDEMRQDIADDEPAIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
S+ N GY EGTL + I E+T M + P L + V + FS HAD
Sbjct: 527 SEPDNTMAFVGYQAEGTLGRQIQRGQDEIT-MGDTSGPRAERVSLRLNVETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG++ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDASTTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|349803283|gb|AEQ17114.1| putative cleavage and polyadenylation specific factor 3 [Pipa
carvalhoi]
Length = 257
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 80/116 (68%), Positives = 93/116 (80%)
Query: 230 REKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKK 289
RE RF + +H +++GGR LIP FALGRAQELLLILDEYW NHPE H+IPIYYAS LAKK
Sbjct: 2 REARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKK 61
Query: 290 CMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQ 345
CMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D F D+GPSVVMASP L
Sbjct: 62 CMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPVTLN 117
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 463 VEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQ 522
V + F EK+AK +G LA+K PE + +SGILVK+ F Y I++P DL ++ L+ + + +
Sbjct: 114 VTLNFRGEKLAKVMGLLADKKPEQRQRISGILVKRNFNYHILSPSDLSSYTDLAMSTVIE 173
>gi|255020925|ref|ZP_05292981.1| Metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus ATCC 51756]
gi|340781543|ref|YP_004748150.1| metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus SM-1]
gi|254969716|gb|EET27222.1| Metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus ATCC 51756]
gi|340555696|gb|AEK57450.1| Metallo-beta-lactamase family protein, RNA-specific
[Acidithiobacillus caldus SM-1]
Length = 460
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 221/474 (46%), Gaps = 58/474 (12%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-------IDPSAIDVLLIT 82
GA V SC + +GK +L DCG+ + G L DE DP +ID+LL+T
Sbjct: 7 GADRNVTGSCHLLEARGKRVLIDCGM---FQGGREL---DEENADDFGFDPRSIDLLLLT 60
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +P L K F+G + T AT+ + +++L D + + ED ++ NR
Sbjct: 61 HAHLDHCGRIP-LLAKRGFRGEIITTAATRELTRVVLLDSAHLQE---EDAERRQRHANR 116
Query: 143 -----------SMDKIEVLDFH-------QTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG 183
++D + L+F Q++E+ G+ Y AGH+LG+A ++ G
Sbjct: 117 HGEASAQPLYTTLDALNALEFFGRTAEYGQSLELAPGLTATFYDAGHILGSASIRIEAHG 176
Query: 184 V----RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
++++GD LR +LP + D ++E+TYG +LH+P I
Sbjct: 177 TGAPKSIIFSGDLGNAGRALLRDPQLPPRA-DSVVMETTYGDRLHKPIEPSIAELFAAIR 235
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
T+ +GG V+IP FAL RAQELL L +P++ SP+A +++ +
Sbjct: 236 DTLQRGGNVIIPTFALERAQELLFYLRRGIEEGELPQRLPVFLDSPMAISATEIFRHHPE 295
Query: 300 SMNERIRNQF-ANSNPFKFKHI----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLF- 353
E + F +PF + +SI VG +V+MA G G R
Sbjct: 296 CYGEEVDALFRKGQDPFALPGLRFVRETADSIALNRLVGGAVIMAGSGMATGGRVRHHLR 355
Query: 354 -DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADY 411
++W SD ++ V GY GTLA+ +I + V L G P++ Q+H I+ FSAHAD
Sbjct: 356 HNLWRSD--SSVVFVGYAARGTLARLLIDGARTVRLF-GDEIPVHAQLHTINGFSAHADQ 412
Query: 412 AQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ + + L P ILVHG+ M L +T++ P + +E+
Sbjct: 413 RELLAWQQALRPTRTILVHGDPDSMDTFAALLK------DTEVNRPAQGEVIEL 460
>gi|118431090|ref|NP_147298.2| exonuclease [Aeropyrum pernix K1]
gi|116062416|dbj|BAA79487.2| putative exonuclease [Aeropyrum pernix K1]
Length = 671
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 131/475 (27%), Positives = 239/475 (50%), Gaps = 32/475 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDPSAIDVLLITH 83
+ LG+ EVGRS + + +L D G+ P+ G + PY+ E +D ++I+H
Sbjct: 194 VVGLGSFGEVGRSAILVDTGESKVLLDAGLSPSGYGPDSYPYYWSPEFRVDELDAVVISH 253
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH +LP L K F+G V+ T T+ I ++L D + + + + + F+ +D+ ++
Sbjct: 254 AHLDHVGTLP-LLFKYGFRGPVYATPPTRDIMIIVLRDLINLMRKAQGEPPFEPRDVEKA 312
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGD---YSREED 197
+ ++ ++++ +V IK AGH+LG++M + I +LYT D Y + D
Sbjct: 313 LTRLIPVNYNTVTDVAPDIKMTFINAGHILGSSMVHLHIGQGLYNILYTADFKFYRIKND 372
Query: 198 RHLRAAELPQFS---PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
R R ++S + I+E+TYG + QPR E+ ++++ +GG++LIP A
Sbjct: 373 RSTRLLPPAEYSFQRVEALIMEATYGSKETQPRAEAEEELINLVNKVYKRGGKLLIPVMA 432
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANS 312
+GR QE+L++L+E + + IPIY + + AVY Y + + IR++
Sbjct: 433 VGRGQEILVVLNEALRSG-KIPEIPIYVDG-MVYEVTAVYTNYPELLVKPIRDRILKQGE 490
Query: 313 NPFKFK---HISPLNSIDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF+ +++ D+ +SD P++++++ G + G + F D +NA
Sbjct: 491 NPFEGPTTVYVTDHYKRDEAMYSD-KPAIILSTSGMMNGGPIVEYFKYLADDPRNALAFV 549
Query: 368 GYVVEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYIS---FSAHADYAQTSTFLKELMP 423
Y GTL + + S +E+ L M+G + + + +S F+ H+ + +FL+ L P
Sbjct: 550 SYQAPGTLGRRLQSGEREIELEMDGGIRRIKVNMEIVSIEGFTGHSTRGELLSFLRRLNP 609
Query: 424 P--NIILVHGESHEMGRLKTKLMTELADCNTK----IITPKNCQSVEMYFNSEKM 472
NI+L HGE + L + T + + I P+N + V +Y + KM
Sbjct: 610 KPRNIVLNHGEPSAIAALAHTVKTGWSKLGFESPPIIEAPENLEGVRLYPRNLKM 664
>gi|435851175|ref|YP_007312761.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
gi|433661805|gb|AGB49231.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
Length = 636
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 226/458 (49%), Gaps = 37/458 (8%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S ++ DCG++ + M Y E+ P S +D
Sbjct: 178 DQWVRVTSLGGCKEVGRSCFLLSTPESCVMIDCGVNVGSEEHMTPYLYVPEVSPFSKLDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++ITH HLDH LP L + F+G V+ T T+ + LL DY+ V+ +
Sbjct: 238 VVITHAHLDHQGLLP-LLYRYGFEGPVYCTPPTRDLMALLQLDYIDVASKEGGRPPYSSA 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
D+ + VLD+ + ++ IK + AGH+LG+A+ F + V++TGD+ E
Sbjct: 297 DVREVLKHSIVLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDFKYE 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + ++ESTYG V QP E VI +T+ G VLIP
Sbjct: 357 KTRLFDPAVNKFPRV--ESVVMESTYGGVNALQPSLQDAEGHMQQVIKNTLQNKGIVLIP 414
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
AFA+GR+QE++++L++ N+P+Y + + A++ TY +N +R
Sbjct: 415 AFAVGRSQEVMIVLEDAIRKG-LIDNVPVYLDG-MIWEATAIHATYPEYLNNDLRKLIFQ 472
Query: 310 ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF + P++S + ++ P V++A+ G + +G + F + D++N V
Sbjct: 473 KGENPFLSECFRPVDSNELRQEIISKREPCVILATSGMMNAGPVMEYFKAFAEDERNTLV 532
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAP---LNMQVHYI-SFSAHADYAQTSTFLKEL 421
GY +GTL + I KE+ L G +NM V I FS H+D Q +++++
Sbjct: 533 FVGYQADGTLGRRIQKGWKEIPLKTGKGTEMIHMNMNVEIIDGFSGHSDRRQLMEYIRKM 592
Query: 422 --MPPNIILVHGES----------HEMGRLKTKLMTEL 447
P + HG+ H+ +++T+ +T L
Sbjct: 593 KPRPERVFTEHGDERSCIDLATSIHKKNKMETRALTNL 630
>gi|147919476|ref|YP_686784.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Methanocella arvoryzae MRE50]
gi|110622180|emb|CAJ37458.1| mRNA cleavage/polyadenylation specificity factor,100 kD subunit
[Methanocella arvoryzae MRE50]
Length = 636
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 237/472 (50%), Gaps = 31/472 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP- 73
PVS + + +T LG EVGRS +S IL DCG++ A S Y E+ P
Sbjct: 173 PVSTKDQWIRVTTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S+ID ++ITH HLDH +P L K ++G ++ T T+ + LL DY++V+ +
Sbjct: 233 SSIDAVVITHAHLDHCGIVP-LLFKYGYEGPIYATPPTRDLSALLQLDYIEVANREGKRP 291
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTG 190
+D I ++ + L++ ++ ++ Y +GH+LG+A+ F + V +TG
Sbjct: 292 PYDSALIREALKRTITLNYGDVTDIAPDVRLTFYNSGHILGSAIAHFHIGEGLYNVAFTG 351
Query: 191 DYSREEDRHLRAA--ELPQFSPDICIIESTYGVQLH--QP-RNIREKRFTDVIHSTISQG 245
D+ E+ + AA P+ + I+ESTYG +H QP R E VI T+++G
Sbjct: 352 DFKYEKSKLFDAAVNNFPRV--ETVIMESTYG-GMHDMQPARREAEIEIQQVIKQTLARG 408
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G+VLIP FA+GR+QE++++L+E N+P+Y + + A++ TY +N +
Sbjct: 409 GKVLIPTFAVGRSQEVMIVLEEAIRRGI-IDNVPVYLDG-MIWEATAIHTTYPEYLNVEL 466
Query: 306 RNQF--ANSNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
++ NPF F + SP +D P +V+A+ G + G + + D
Sbjct: 467 QDMIFHKGQNPFLSPSFVQVDSPQKREKILADPSPCIVLATSGMMNGGPVMEYLKTYGHD 526
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTL-MNGLTA--PLNMQVHYI-SFSAHADYAQTS 415
++N + GY EGTL + I E+ + + G T +N+QV + FS H+D Q
Sbjct: 527 RRNTLIFVGYQAEGTLGRRIQKGWNELPMSVGGKTEIMKINLQVTTVDGFSGHSDRRQLM 586
Query: 416 TFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
++K + P II HG+ ++ L + + + TK +P N +++ +
Sbjct: 587 EYVKRMDPRPERIITNHGDENKCLDLASSIYKKYK-LETK--SPMNLETIRL 635
>gi|374327735|ref|YP_005085935.1| mRNA 3'-end processing factor [Pyrobaculum sp. 1860]
gi|356643004|gb|AET33683.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum sp. 1860]
Length = 644
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 137/455 (30%), Positives = 222/455 (48%), Gaps = 34/455 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + +T LGA EVGRS + +S +L DCG+ P P D +D
Sbjct: 177 PVVKEG-PITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYD-EDFPLLDLVDIDK 234
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D +++TH H+DH LP L K ++G V+MT TK +LL+DYV++ + F
Sbjct: 235 LDAVVLTHAHMDHVGCLP-LLFKYGYRGPVYMTDPTKYQAFILLSDYVELKEREGLQPSF 293
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
DI + LD+ + ++ IK Y AGH +G+AM + I R +LYTGD+
Sbjct: 294 SMADIEAVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 353
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR E + T+S+GG+VLI
Sbjct: 354 KYGKTRLLNRAVNKFKRVEMLIMESTYGGKDDVQPPRLEAENALAKHVSDTVSKGGKVLI 413
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L IL++ +PIY + + A Y Y +N + + +
Sbjct: 414 PAFSTGRGQEILYILNKMIEGGL-VPRVPIYVDGMIVETLNA-YLMYPHYLNPEVAEEIY 471
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
NPF + K + + I+ + + P+V++A G L G F
Sbjct: 472 GGVNPFTTSGSVVIVDRAKRVE--DRINQVAKIAQSEEPAVIIAPHGMLNGGPVLDYFAQ 529
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTL--MNGLTAPLNMQVHYIS---FSAHAD 410
D++N + Y EGTL + I++ +E + + G + ++M++ S FS H+D
Sbjct: 530 LAYDERNKLIFVSYQAEGTLGRRILNGEREFVIRSLVGGESKIDMRMEVASIPGFSGHSD 589
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKL 443
+ +++ E P I+L+HGE ++ L T +
Sbjct: 590 RRELMKYVEHMEPKPKKIVLIHGEPSKIISLATSI 624
>gi|424811901|ref|ZP_18237141.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756123|gb|EGQ39706.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 619
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 128/466 (27%), Positives = 237/466 (50%), Gaps = 31/466 (6%)
Query: 17 VSREGDQ---LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD-- 69
+ RE D + ++ LG +VGRSCV + + +L DCGI P+ P+ D
Sbjct: 159 IRRESDDEEWVRVSSLGGFRQVGRSCVLVQSETSNVLLDCGIDPSAEEGSRNNFPHLDAP 218
Query: 70 EIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS 129
E+D A+D ++++H H+DH +PY L + + G ++ T T+ + + DY+ +S
Sbjct: 219 ELDIPALDAVVLSHAHMDHMGMIPY-LYRMGYDGPLYCTAPTRDLMIMQTLDYIDISHSE 277
Query: 130 VEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RV 186
++ + I +++ + ++ + +V IK +GH++G+++ + I G+ +
Sbjct: 278 QASAPYESKHIKQAVKRTITPEYGKVTDVAPDIKLTLRNSGHIIGSSIVHMHIGDGLHNL 337
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQ 244
LYTGDY+ ++ LR A + I ESTYG + QPRN +K+F + T+++
Sbjct: 338 LYTGDYNYDDSHMLRPASTDFHRVETVITESTYGGRDDEQQPRNQAQKQFLSKMKQTLAK 397
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+V++PAFA+GR+QE+L ++ + S+ H Y + + A++ Y ++++
Sbjct: 398 GGKVIVPAFAVGRSQEILGVMADELSHE---HFDATVYLDGMIRDANALHTAYPEYLSKK 454
Query: 305 IRNQ-FANSNPFKFKHISPLNSIDD----FSDVGPS-VVMASPGGLQSGLSRQLFDIWCS 358
I+ + FA ++PF I ++S ++ F D PS VV+ + G + G S
Sbjct: 455 IQKKIFAGNSPFTDDQIRSISSHEERKQAFED--PSCVVLTTSGMVTGGPIMSYLKKEAS 512
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTF 417
N + GY +GTL + I++ +V + +G ++M V +S FSAH+D Q F
Sbjct: 513 RSDNTLIFVGYQADGTLGRRILNGANQVEI-DGERVEVDMNVENVSGFSAHSDREQIKDF 571
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
++ L ++ HGE+ + +L + + L N P N +
Sbjct: 572 VRSLDGRADHVFCNHGETKKCFQLASSIYKSL---NVSTSAPDNLE 614
>gi|375082947|ref|ZP_09729988.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
gi|374742377|gb|EHR78774.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
Length = 651
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 126/442 (28%), Positives = 219/442 (49%), Gaps = 29/442 (6%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------I 71
+ D + IT LG EVGRS + + +L D G++ A P+FD +
Sbjct: 185 KSDWIRITGLGGFREVGRSALLLQTNESFVLVDFGVNVAALNDPKKGFPHFDAPEFTYVL 244
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+D ++ITH HLDH+ LPY F G ++ T T+ + LL D++++ + +
Sbjct: 245 KEGLLDAIIITHAHLDHSGLLPYLFRYNLFDGPIYATPPTRDLMVLLQKDFIEIQQSNGI 304
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLY 188
D L+ +DI + LD+ + +++ ++ + AGH+LG+++ + + +
Sbjct: 305 DPLYRMRDIKEVVKHTITLDYGEVRDISPDLRLTLHNAGHILGSSIVHLHVGNGLHNIAV 364
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGG 246
TGD+ R A + I+ESTYG PR EKR +VI TI + G
Sbjct: 365 TGDFKFIPTRLFEPANAKFPRLETLIMESTYGGSRDYQMPREEAEKRLIEVILQTIKRKG 424
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+VLIPA A+GRAQE+++ L++Y ++PIY + + A++ Y +++ +R
Sbjct: 425 KVLIPAMAVGRAQEIMIALEDYARVG--GLDVPIYLDG-MIWEATAIHTAYPEYLSKNLR 481
Query: 307 NQFANS--NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDK 360
NQ + NPF + P+ + ++ D+ P++++AS G L G S + F D
Sbjct: 482 NQIFHEGYNPFLNEIFKPVANANERKDIIESEEPAIIIASSGMLVGGPSVEYFKHLAPDP 541
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTS 415
+N+ + Y EGTL + + +E+ + G T +NM++H I FS HAD +
Sbjct: 542 RNSLIFVSYQAEGTLGRQVQRGLREIPTVGEGGKTEVIQVNMEIHTIDGFSGHADRRELM 601
Query: 416 TFLKEL--MPPNIILVHGESHE 435
+++ + P +I VHGE +
Sbjct: 602 SYVARVKPRPERVITVHGEPQK 623
>gi|70952759|ref|XP_745526.1| cleavage and polyadenylation specificity factor protein [Plasmodium
chabaudi chabaudi]
gi|56525876|emb|CAH78255.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 327
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 155/316 (49%), Gaps = 72/316 (22%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD---------------- 69
I LGAG VGRSCV + + + I+FDCG H Y P F+
Sbjct: 12 IKVLGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNNNMEGGPKIDE 71
Query: 70 ------EIDPSA---------------------IDVLLITHFHLDHAASLPYFLEKTTFK 102
E++ S ID ++I+HFH+DH +LP+F E +K
Sbjct: 72 ENNLNVEVNISIVNSNIADKEKLINNLKRINEIIDCVIISHFHMDHIGALPFFTETLQYK 131
Query: 103 GRVFMTHATKAIYKLLLTDYVKVSKVSVE----------------DML------------ 134
G + M++ TKA+ +LL D K+S E D+L
Sbjct: 132 GTIIMSYPTKALSPVLLLDGCKISDQKWEKKNLEKQIKMLNEKSDDLLNYNINRIKKDPW 191
Query: 135 -FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
E++I M+K+ L ++T E+ I Y AGHVLGA M+ +++ V V+YTGDY+
Sbjct: 192 NITEENIYNCMNKVVGLQVNETYELGDISITPYYAGHVLGACMYRLEVNNVSVIYTGDYN 251
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
D+HL + ++P +P+I I ESTY + R E ++++ + +GG+VLIP F
Sbjct: 252 TIPDKHLGSTKIPVLTPEIFISESTYASYVRPTRKSSELELCNLVNECVHKGGKVLIPVF 311
Query: 254 ALGRAQELLLILDEYW 269
A+GRAQEL ++L+EYW
Sbjct: 312 AIGRAQELSILLEEYW 327
>gi|359415409|ref|ZP_09207872.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
gi|358034266|gb|EHK02708.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
Length = 623
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 125/459 (27%), Positives = 230/459 (50%), Gaps = 27/459 (5%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPYFD--EIDPSA 75
GD+ I I+ LG +VGRSCV + + +L D GI+P PY + E+D
Sbjct: 169 GDEWIRISSLGGFRQVGRSCVLVQTEESNVLMDAGINPGAEPGSQDNFPYLNAPELDLRD 228
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H H+DH +PY L K + G ++ T T+ + +L DY+ ++ +
Sbjct: 229 LDAVVLSHAHMDHCGMIPY-LYKMGYDGPLYCTKPTRDMMIMLTLDYIGLAHSENNRAPY 287
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDY 192
D I +++ + D+ + ++ ++ +GH++G+A+ + + G+ +LYTGDY
Sbjct: 288 DSSAIKKAVKRTITPDYGEVTDITPDMRLTLKNSGHIIGSALTHIHVGEGLHNILYTGDY 347
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQ--PRNIREKRFTDVIHSTISQGGRVLI 250
+ + LR A+ + I ESTYG + + PR K+F + T+S+GG+V++
Sbjct: 348 NYDTTETLREADTNFQRVETMITESTYGGRDDEQTPREEANKKFLSKVKQTLSKGGKVIV 407
Query: 251 PAFALGRAQELL-LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ- 308
P FA+GR+QE+L L+ DE ++ +++ Y + A++ Y ++ +I+++
Sbjct: 408 PVFAVGRSQEVLALLADEMDRSYFDYN----VYIDGMINDANALHTAYPEFLSNKIQDKV 463
Query: 309 FANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ + +PF +I P+ S + +V +++ + G + G + SD N+ +
Sbjct: 464 YQDESPFLKDNIKPIGSHSERKEVFEDDACIILTTSGSITGGPVMSYLEKEASDPDNSLI 523
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL--M 422
GY EG+L + I +EV + NG +N+ +S FSAH+D Q F K L
Sbjct: 524 FVGYQFEGSLGRKIQEGAEEVEI-NGKNVEVNLDTSSVSGFSAHSDRDQIINFAKNLRST 582
Query: 423 PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQ 461
P ++ HGE + L + L L N P+N +
Sbjct: 583 PNRVLTNHGERSKCFSLASSLHKAL---NIDTSAPQNLE 618
>gi|440795786|gb|ELR16902.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 134
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 102/123 (82%), Gaps = 3/123 (2%)
Query: 9 SLKRRDAPVS--REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP 66
L +R A V+ EGD L I P+GAG+EVGRSC+ + +KGK I+ DCGIHPAY+G+AALP
Sbjct: 7 GLGKRKAEVTLEEEGDILEIMPIGAGSEVGRSCILLKFKGKHIMLDCGIHPAYTGLAALP 66
Query: 67 YFDEID-PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
YFD ID P+ ID+LL++HFHLDH ASLPYF+EK+TFKGRV+MTH TKAIYK+LLTD+VKV
Sbjct: 67 YFDMIDDPATIDLLLVSHFHLDHCASLPYFMEKSTFKGRVYMTHPTKAIYKMLLTDFVKV 126
Query: 126 SKV 128
V
Sbjct: 127 RHV 129
>gi|327311459|ref|YP_004338356.1| beta-lactamase domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326947938|gb|AEA13044.1| beta-lactamase domain protein [Thermoproteus uzoniensis 768-20]
Length = 635
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 138/453 (30%), Positives = 217/453 (47%), Gaps = 30/453 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + ++ LGA EVGRS + + +L DCG+ P+ P +++D +
Sbjct: 168 PVVKEG-PITVSFLGASMEVGRSAILVDTTESKVLLDCGLKPS-QYEEEFPLLEQVDLDS 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
+D ++++H H+DH LPY L K ++G V+MT TK + +LLTDYV++ + + +
Sbjct: 226 LDAVVLSHAHMDHVGCLPY-LYKYGYRGPVYMTDPTKYLTYILLTDYVELKEREGQIPPY 284
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
+ DI M I LD+ + ++ IK Y AGH +G+A+ + I R +LYTGD+
Sbjct: 285 TKSDIETLMYHIITLDYEEVTDIAPDIKLTLYDAGHEIGSALVHLHIGNGRYNILYTGDF 344
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
L A ++ I+ESTYG + + PR E I TI G+VLI
Sbjct: 345 KFGRTNLLNKAVNKFKRVEMLIMESTYGGRDDVQPPRVEAENTLVKAITETIENRGKVLI 404
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GRAQE+L IL+ N +PIY + + A Y Y +N + + +
Sbjct: 405 PAFSTGRAQEILYILNREI-NRGNLKRVPIYVDGMIVETLNA-YLMYPHFLNREVAEEIY 462
Query: 310 ANSNPF----------KFKHISP-LNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWC 357
NPF + K I +N I + D P V++A G L G F
Sbjct: 463 GGVNPFTSSGSIEVVERAKRIEDRINQIARITQDERPGVIIAPHGMLNGGPILDYFVHLA 522
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTL----MNGLTAPLNMQVHYI-SFSAHADYA 412
D N + Y E TL + I++ K+ + M + M V I FS H+D
Sbjct: 523 PDPANKLIFVSYQAENTLGRRILNGEKDFIVRSISMGETKVSMRMGVVSIPGFSGHSDRR 582
Query: 413 QTSTFLK--ELMPPNIILVHGESHEMGRLKTKL 443
+ +++ E P ++L+HGE ++ L T +
Sbjct: 583 ELMKYVETVEPRPRKVVLIHGEPSKIVSLATSI 615
>gi|116753406|ref|YP_842524.1| beta-lactamase domain-containing protein [Methanosaeta thermophila
PT]
gi|116664857|gb|ABK13884.1| beta-lactamase domain protein [Methanosaeta thermophila PT]
Length = 635
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 219/433 (50%), Gaps = 28/433 (6%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP-SAID 77
DQ + I+ LG EVGRSC+ +S I+ DCGI+ S +A PY E+ P S ID
Sbjct: 178 DQWVRISTLGGCREVGRSCMLLSTPESKIIVDCGINVG-SDDSATPYLYVPEVYPLSQID 236
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDH+ +P L K ++G ++ T T+ +Y LL DY++V+ + + +D
Sbjct: 237 AVVLTHAHLDHSGLVP-MLYKYGYEGPIYCTPPTRDLYVLLQLDYIEVAGREGKRLPYDS 295
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSR 194
I ++ L++ ++ K + AGH+LG+A+ F + V +TGD+
Sbjct: 296 SMIREALKHTITLNYGDVTDIAPDTKLTMHNAGHILGSAIAHFHIGDGLYNVAFTGDFKY 355
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E+ R A P+ + +IE+TYG + R E V+ TI +GG+V+I
Sbjct: 356 EKTRLFDPAVNSFPRL--ETLVIEATYGGANSIQPSRKEAENHLLRVVRETIKRGGKVVI 413
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PAFA+GR+QE++++L+E P+Y + + A++ +Y +N +R+
Sbjct: 414 PAFAVGRSQEVMVVLEEAIRKG-LIGEFPVYLDG-MIYEATAIHTSYPEYLNNELRDMIF 471
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ NPF F + D+ + P+V++A+ G L G + D+KN V
Sbjct: 472 HKGINPFLAECFVQVENSKQRDEIINGEPAVILATSGMLNGGPIMEYLKGLGPDEKNTLV 531
Query: 366 IPGYVVEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYIS---FSAHADYAQTSTFLKEL 421
I GY EGTL + I KE+ L + G T + M + ++ FS H+D Q +++ +
Sbjct: 532 IVGYQAEGTLGRRIQKGWKEIPLTVEGKTQTVKMNMEVVTVDGFSGHSDRNQLMEYVRRV 591
Query: 422 --MPPNIILVHGE 432
P II HG+
Sbjct: 592 YPKPSRIITNHGD 604
>gi|307610917|emb|CBX00534.1| metallo-beta lactamase family [Legionella pneumophila 130b]
Length = 453
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 133/451 (29%), Positives = 219/451 (48%), Gaps = 43/451 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A LP ++P ID ++
Sbjct: 3 LTFLGATETVTGSKYLLTVDSKKILIDCGLFQGYKELRLRNWAPLP----VNPRDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YVKVSKVSVEDM----- 133
ITH H+DH LP + K F+G+++ T TKA+ +LL D +++ + + +
Sbjct: 59 ITHAHIDHTGYLPLLI-KNGFQGKIYATTGTKALCSILLPDSGHLQEEEARLANKYGFSK 117
Query: 134 ------LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
L+ EQ+ +++ E +DF + N + F + AGH++GAAM + +
Sbjct: 118 HRPALPLYTEQEARVALNYFETIDFDTPHSLFNVLSFEFHRAGHIVGAAMVKIKTKKGSM 177
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
++TGD R D ++A + Q + D ++ESTYG +LH + + +VI+ TI +GG
Sbjct: 178 VFTGDLGRPHDPVMKAPSVIQET-DYLVMESTYGDRLHDATDPLPQ-IGEVINRTIKRGG 235
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS--MNER 304
V+IPAFA+GRAQ LL + E IP++ SP+A + TY +NE
Sbjct: 236 SVIIPAFAVGRAQSLLYFIYELKRKGEIPKEIPVFLDSPMAINATKLLCTYKEDHHLNEE 295
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDK 360
N + +N+ ++ ++ P +++A+ G Q G + D
Sbjct: 296 QCRGLCNVATY-------INTPEESKEIDRHKMPQIIIAASGMAQGGRILHHLKAFAPDP 348
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLK 419
KN + G+ GT +++ +EV + GL P+ QV +S SAHADY + +LK
Sbjct: 349 KNTLLFTGFQAGGTRGARMVNGEREVKIHGGLV-PIRAQVVVMSSTSAHADYLEMLEWLK 407
Query: 420 ELM--PPNIILVHGESHEMGRLKTKLMTELA 448
P + + HGE H LK K+ ++L
Sbjct: 408 HFTHPPKKVFITHGELHSAQSLKEKIESQLG 438
>gi|332712233|ref|ZP_08432161.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Moorea producens 3L]
gi|332349039|gb|EGJ28651.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Moorea producens 3L]
Length = 867
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 137/433 (31%), Positives = 217/433 (50%), Gaps = 32/433 (7%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSAI 76
S+ D+LI+TPLGA +G SC + ++ DCG P Y + AL Y D +P
Sbjct: 273 SQSYDRLIVTPLGAARSIGASCFKILIGPYEVVLDCGTRPKGYDPLPALDYLD--NP--- 327
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKG-RVFMTHATKAIYKLLLTDYVKVSKVSVEDM-- 133
++LLI+H H DH ++P F + + G R+ TH T+ I ++L D +K+ +++ ED
Sbjct: 328 NLLLISHSHQDHLGAVPVF--HSRYPGARMISTHGTREIAHVMLRDGLKIQQLN-EDSPE 384
Query: 134 LFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
LFDE D+ +++ ++E + E + G+ AGH+LGAA + + +LYTGD+
Sbjct: 385 LFDEADLEQTLFQLETQPVGKDFEPLPGLMVRFINAGHILGAACIYLRYKDMSLLYTGDF 444
Query: 193 SREEDR---HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
R L AELP+ DI I ESTYG +H R +E + I + GG VL
Sbjct: 445 HTTNSRTTNGLNLAELPE--ADILITESTYGSSVHPARRNQETALMESIAEVVQAGGNVL 502
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN-- 307
IP+FALGRAQE+LL + S +PI+ L + V++ + + ++N
Sbjct: 503 IPSFALGRAQEILLGIRT--SKLFNKLTVPIFVDG-LVRAVTEVFRENLDLLPVPVQNLV 559
Query: 308 QFANSNPFKFKHIS--PLNSIDDFSD-----VGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ PF F S P+ SI+ F + PSV++AS G L G S + +
Sbjct: 560 KINGQEPF-FDKTSTPPIISIEHFRERPIAIAKPSVIVASSGMLTGGPSVYYASVLLERE 618
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
A I GY E + + + S T+ ++G + Q+ + SAH D +
Sbjct: 619 NAAIFISGYTDEESPGRLLQSLKTGDTIELDGKPITVKAQIKRFNLSAHTDKVGLGQVIN 678
Query: 420 ELMPPNIILVHGE 432
++ P +++L+HGE
Sbjct: 679 KVKPKHLVLIHGE 691
>gi|339501394|ref|YP_004699429.1| beta-lactamase domain-containing protein [Spirochaeta caldaria DSM
7334]
gi|338835743|gb|AEJ20921.1| beta-lactamase domain protein [Spirochaeta caldaria DSM 7334]
Length = 470
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 213/442 (48%), Gaps = 38/442 (8%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
+ + LGA EV S + G++ L DCG A D ID I+ +++T
Sbjct: 3 ITLYSLGAAEEVTGSKHVLEVDGRSYLIDCGAFQGKRAEADRKNRDFGIDTDRIESVVLT 62
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H H DH LP L K+ +KG ++ T AT+ I L++ D ++ E +
Sbjct: 63 HGHFDHCGLLP-LLPKSGYKGTIYATPATRDISSLVMMDSARIQARDAEYLGKQAVKKGE 121
Query: 134 ------LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDI---AG 183
L+ EQD + +I + + + + + +G++ Y AGH+LG+AM ++ I
Sbjct: 122 KFTWQPLYTEQDAIAATGQIVSVSYQRPMWIGDGVQLEFYDAGHILGSAMAVIKIKQNGS 181
Query: 184 VRVL-YTGDYSREEDRHLR--AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
R++ YTGD R+ +R A LP +PD ++ESTYG + H KR +V+
Sbjct: 182 ERIIAYTGDLGRKGKPIIRDPATNLP--APDYLVLESTYGDRRHDGTEDAMKRLAEVVRR 239
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
+ GR+LIP+FA+ R QEL+ ++ E IPIY SP+A ++Q +
Sbjct: 240 AVKTKGRILIPSFAIERTQELVYYF-HMLTDRGEIPEIPIYVDSPMATNATTIFQVHPEC 298
Query: 301 MNERIRNQFA--NSNPFKFKHISPLNSIDD---FSDV-GPSVVMASPGGLQSGLSRQLFD 354
+E F + NPF F + S+D+ +D+ GP V++++ G ++G +
Sbjct: 299 YDEETHEAFIKHHKNPFGFNALHFTTSVDESKALNDMEGPLVIISADGMCEAGRIQHHLI 358
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQ 413
D +I GY+ E TL + I EV + +G L QV I +FSAHADY +
Sbjct: 359 HSIEDPNTTILIVGYMAEDTLGRRIRDREGEVKI-HGEWFKLRAQVEAIDAFSAHADYQE 417
Query: 414 TSTFLKEL---MPPNIILVHGE 432
T +LK + I LVHGE
Sbjct: 418 TIDWLKAIDTSRLKKIFLVHGE 439
>gi|340345702|ref|ZP_08668834.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520843|gb|EGP94566.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 645
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 214/428 (50%), Gaps = 24/428 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVLLITHFH 85
LG ++VGRSC+ +S IL DCGI+P A M + P D +D + +D ++I H H
Sbjct: 193 LGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDITLDELDAIVIGHAH 252
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 253 LDHTGFLPA-LCKFGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYSERDVKQIMK 311
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 312 QAITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 371
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG + + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 372 ASWNFPRVETLLIESTYGAKEDIQPTRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 431
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A+++ Y + ++ + + NPF +
Sbjct: 432 IMMVIDHYMKSG-EMVEAPVFTEG-MISEASAIHEAYPEYLARELKQKILETDDNPFDSE 489
Query: 319 HISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D D P +++A+ G L+ G + F DKKN + Y V GT
Sbjct: 490 YFTNIEHADTREEPMRDNSPCIILATSGMLEGGPVLEYFKNIAPDKKNKVLFVSYQVNGT 549
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
+ + ++ K+VT++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 550 MGRRVLDGSKQVTMLGKEGKVEVVTINCSVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 609
Query: 428 LVHGESHE 435
+ HGE +
Sbjct: 610 VNHGERRK 617
>gi|406944106|gb|EKD75956.1| hypothetical protein ACD_43C00270G0007 [uncultured bacterium]
Length = 446
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/457 (28%), Positives = 219/457 (47%), Gaps = 30/457 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-----SGMAALPYFDEIDPSAIDVLL 80
+T GA V SC + ++ +L DCG+ + P+ DP+ +D +L
Sbjct: 3 VTFFGACQMVTGSCYLVEHESTKLLVDCGMVQGEQFTDNTNYDPFPF----DPTELDYVL 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----LFD 136
ITH H+DH +P + + F G++ THAT L+L D V ++ E L+
Sbjct: 59 ITHAHIDHCGRIPRLV-RQGFAGKIIATHATLDFVFLMLEDSAHVIQLDAELAGYPPLYT 117
Query: 137 EQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
+D+ + +D+H+ ++ I + AGH+LG+A + G ++++GD
Sbjct: 118 AEDVQATAKLFSGIDYHEVKKMGSITAEWFDAGHILGSAFIRLQAGGKSIVFSGDLGNPP 177
Query: 197 DRHLRAAE-LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
L+ E LP + D+ +IESTYG ++H+ R+ I+ T+ G +LIPAFAL
Sbjct: 178 VPLLKPTESLP--ACDVLVIESTYGSRVHEAARERKLLLASAIYETVQMDGILLIPAFAL 235
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP- 314
R QE+L L++ H + +PI+ SPLA K +Y Y N+ + + +
Sbjct: 236 ERTQEILYELND-LVEHKDIPAVPIFIDSPLAIKATRIYPKYNQWFNQETQYLIESGDDI 294
Query: 315 FKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
FKF + +++++ + P V+MA G LQ G R + +D K +I GY
Sbjct: 295 FKFNGLKFTSTVEESRSILHVKAPKVIMAGSGMLQGGRIRYHTRNYLADSKTQLLIVGYQ 354
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL-MPPNIIL 428
V G+L + ++ K+V +++G T + ++ I ++SAHAD + +L P I +
Sbjct: 355 VAGSLGRQLLDGEKKV-VIDGETIRVGAKIRAIGAYSAHADQPKLLEWLATAPSKPKIFI 413
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
HGE + L+ L + P + QS E+
Sbjct: 414 THGEMTQATALEAVLHKRFYEAT----IPSSGQSTEL 446
>gi|153955532|ref|YP_001396297.1| hypothetical protein CKL_2915 [Clostridium kluyveri DSM 555]
gi|219855928|ref|YP_002473050.1| hypothetical protein CKR_2585 [Clostridium kluyveri NBRC 12016]
gi|146348390|gb|EDK34926.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569652|dbj|BAH07636.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 832
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/481 (27%), Positives = 231/481 (48%), Gaps = 27/481 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDVLLITHF 84
I+ LG EVG SC+ + + IL DCGI + S ALP F I + ID ++I+H
Sbjct: 7 ISFLGGAREVGGSCILVKIYNRNILMDCGIRQS-SSKDALPDFKSIQEQGGIDAIIISHS 65
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-SKVSVEDMLFDEQDINRS 143
H+DH SLP + K R++ T TK + ++LL D +K+ + E L+ E D+
Sbjct: 66 HMDHIGSLP-IISKEYPLARIYATKMTKDLMRVLLYDSLKIMNNREGEIPLYAESDVKNM 124
Query: 144 MDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
++ I +++ + +K Y AGH+ GAA V + Y+GD+S + +
Sbjct: 125 LNSIFPINYMVEFPIFQDVKLTFYMAGHIAGAACVYVTTPEGSLFYSGDFSVFSQKTVEG 184
Query: 203 AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
++P+ PD+ I E+TYG +LH R + E+R D+I+ + G++LIPAFALGR+QE+L
Sbjct: 185 LKVPRLRPDVAIFEATYGDRLHSNREVEEERLIDIINECKRKKGKMLIPAFALGRSQEVL 244
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHIS 321
L + + N +I + Y + + Y+ L + + + PF +I
Sbjct: 245 LTIKKAL-NKNILKDIKV-YVDGMIRDINRTYKLNPLYLKNSLGKKILKGIEPFYDDNII 302
Query: 322 PLNSIDD-------FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
P IDD D ++++S G L G S+ + + V+ GY E +
Sbjct: 303 P---IDDNKLRKKILEDDESLIIISSSGMLTGGYSQYYAEKIAPMENGYIVMTGYQDEES 359
Query: 375 LAKTIISEPKEVTL----MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
+ ++ KE +N P+N +V + SAH+D ++ + + L P NI +VH
Sbjct: 360 PGRKLLELLKEEKDKKLYINEKVIPVNCKVKNVGLSAHSDKSEIKSLINFLSPRNIFIVH 419
Query: 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNS--EKMAKTIGRLAEKTPEVGE 488
G + +L +E+ K+ PK + ++ N ++ K++ ++ E+ E
Sbjct: 420 GNEDVIENFCMQLSSEVK---GKVYAPKCSEIYDININKPRKQWRKSLDKVMNCNEELDE 476
Query: 489 T 489
Sbjct: 477 N 477
>gi|124028414|ref|YP_001013734.1| exonuclease [Hyperthermus butylicus DSM 5456]
gi|123979108|gb|ABM81389.1| predicted exonuclease [Hyperthermus butylicus DSM 5456]
Length = 643
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 133/430 (30%), Positives = 217/430 (50%), Gaps = 23/430 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITH 83
IT LG EVGRS + + IL D GI+P+ G P D +++ +D +++TH
Sbjct: 181 ITALGGFMEVGRSAILIETSESKILLDVGINPSGIGYNLYPRLDIDQLNLEELDAVVVTH 240
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH +PY K ++G V+ T T+ + LLL D + + + S + + +Q++ +
Sbjct: 241 AHLDHIGLVPYLF-KYGYRGPVYATKPTRDLMVLLLLDLLDIMQRSGQKPPYTQQEVKKM 299
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA-GV-RVLYTGDYSREEDRHL 200
+ LD+ + ++ +K Y AGH+LG+A+ + I G+ ++YTGD+ R L
Sbjct: 300 ILHTIPLDYGEVTDIAPDMKLTFYNAGHILGSAIAHIHIGEGLHNIVYTGDFKFGRTRLL 359
Query: 201 RAA--ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
A E P+ + I+ESTYG + R+ E VI TI++ G+VLIP A+GRA
Sbjct: 360 DKAHTEFPRV--ETLIMESTYGDRDQPRRDEAELELISVISKTIARRGKVLIPVMAVGRA 417
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKF 317
QE+LL+L + IY + K+ A++ TY ++ ++R + NPF
Sbjct: 418 QEILLVLVDALRKKLLPPETKIYIDGSI-KEVTAIHLTYPELLSAQVRARILRGENPFDH 476
Query: 318 KHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
++I + D+ P V++A+ G L G S + + D +N V Y +G
Sbjct: 477 ENIVRVEGRQMREDIAKSDEPGVILATAGMLTGGPSVEYLRLLAPDPRNVLVFVSYQAKG 536
Query: 374 TLAKTIISEPKEVTLMNGLTAP----LNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNI 426
TL + I+ +E+T+++ P + M+V I FS H+D Q FL + P NI
Sbjct: 537 TLGRRILDGEREITMVDEEGKPQLVRIQMEVKSIDGFSGHSDRRQLLAFLANMKPKPKNI 596
Query: 427 ILVHGESHEM 436
IL HGE +
Sbjct: 597 ILNHGEPQSI 606
>gi|385811246|ref|YP_005847642.1| RNA-processing exonuclease [Ignavibacterium album JCM 16511]
gi|383803294|gb|AFH50374.1| Putative RNA-processing exonuclease [Ignavibacterium album JCM
16511]
Length = 461
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/439 (30%), Positives = 222/439 (50%), Gaps = 34/439 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
+G GNE+G +C Y++ G I+ DCGIHP G+ +LP F+ ++ +D LI+H H DH
Sbjct: 7 VGGGNEIGANCFYLNINGNGIILDCGIHPQKVGIESLPKFELLENKTLDHALISHAHQDH 66
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF-----DEQDINRS 143
A+LP+ ++K + ++F T T+A+ +L L + V + K ++D F DE D+
Sbjct: 67 IAALPFLIKKFPYI-KIFTTPQTRALAELTLHNAVSILKKEIKDEQFEFYTHDEVDLLIK 125
Query: 144 M------DKIEVL-DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREE 196
M +K +L +HQ E + I + + AGH+LG++ ++ G ++ YTGD +
Sbjct: 126 MINYYDYEKDFLLSSYHQLKEADVIATF-FDAGHILGSSGIFLNNNGYKIFYTGDINLAN 184
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRE-----KRFTDVIHSTISQGGRVLIP 251
AA LP + I+ESTYG R I + +RF + ++ G +L+P
Sbjct: 185 QTIQPAAILPNTKINTLILESTYGAT--DSREILDWQKEAERFAKEANKILTGGSSILVP 242
Query: 252 AFALGRAQELLLILDEYWS--NHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
FALG+ QE+L + WS + + ++ + K VY +N RI +F
Sbjct: 243 VFALGKLQEMLATI---WSLMQKRKLSQVDVFTGG-IGTKINRVYDYNRYVIN-RIDKEF 297
Query: 310 ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP-G 368
S+ + + S L S+DDF PS+V+AS G + G S F + +KN+ + G
Sbjct: 298 ELSSIPQNDY-SQLTSVDDFFR-NPSIVLASSGMIIKGTSSYDFAMRFLQQKNSAIFTVG 355
Query: 369 YVVEGTLAKTIISEPK-EVTLMNGLTAPLNM--QVHYISFSAHADYAQTSTFLKELMPPN 425
Y+ E T I K + ++ PL + ++ FSAHA Q + +K+L P N
Sbjct: 356 YMDERTPGYPISKAKKGDKIFIDNSDKPLEVKCEIKNFRFSAHARREQLISIVKKLKPDN 415
Query: 426 IILVHGESHEMGRLKTKLM 444
+ILVHG+ + +++
Sbjct: 416 VILVHGDEEAFNWMGKEIL 434
>gi|55378101|ref|YP_135951.1| mRNA 3'-end processing factor-like protein [Haloarcula marismortui
ATCC 43049]
gi|448648471|ref|ZP_21679602.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
gi|55230826|gb|AAV46245.1| mRNA 3'-end processing factor-like [Haloarcula marismortui ATCC
43049]
gi|445775572|gb|EMA26582.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
Length = 640
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 231/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P+++D +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSLDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+ +
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLRDVINESYE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G+VLIPAFA+GR+QEL+L+L+E + +P+Y + ++ A++ Y + +
Sbjct: 409 NDGKVLIPAFAVGRSQELMLVLEEAMRKG-DIPTMPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + ++ D D +D P++++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFEQVDGGDEMRQDIADDEPAIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
SD + GY EGTL + I E+TL + + P L + V + FS HAD
Sbjct: 527 SDPDSTMAFVGYQAEGTLGRQIQRGQDEITLGD-TSGPRAERVSLRLNVETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG++ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDASTTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|42523510|ref|NP_968890.1| beta-lactamase exonuclease [Bdellovibrio bacteriovorus HD100]
gi|39575716|emb|CAE79883.1| predicted exonuclease of the beta-lactamase family [Bdellovibrio
bacteriovorus HD100]
Length = 452
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/438 (29%), Positives = 210/438 (47%), Gaps = 25/438 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
LGA V S + IL DCG+ + + L + D DP I +++TH HLD
Sbjct: 6 LGAAGTVTGSKFLVHNNDTRILVDCGMFQGFKELRELNWEDFPFDPRDIQAVVLTHAHLD 65
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SKVSVEDML 134
H +LP L K FKG ++ T T + K++L D K+ SK S L
Sbjct: 66 HCGALP-LLVKKGFKGPIYCTEPTLELTKIILLDSAKIQEEDADYANKKGFSKHSPALAL 124
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSR 194
+ +D+ R++ + ++ H E+ +K Y++GH+LGAA + + ++GD R
Sbjct: 125 YTTEDVERTLPLLRPVNLHTQFEIGSLKVCFYSSGHILGAASATISNGEKSIHFSGDLGR 184
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
D + A E P D ++ESTYG + H P+ +E + I + G +LIP+FA
Sbjct: 185 YNDPLMPAPE-PPAKADYLVMESTYGDRDHSPKTSKEV-LKECILEIVKSRGVLLIPSFA 242
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--S 312
+GRAQ LL + E + IP+Y+ SP+ + +Y+ Y + QFA S
Sbjct: 243 VGRAQNLLFEITELKRDGEVPAQIPVYFNSPMGHEVALLYEKY-HPFHRLGSGQFAEVMS 301
Query: 313 NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
K +++D GP +++A+ G L G + D +N ++ G+
Sbjct: 302 EVHTIKTAEESRALND-DKSGPKIIIAASGMLTGGRVLHHLKAFGPDSRNIVLLAGFQSP 360
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQV-HYISFSAHADYAQTSTFLKEL--MPPNIILV 429
GT ++++ +E+ + +GL +N +V SFSAHAD + T+LK+ +P + LV
Sbjct: 361 GTRGFSLLNGAREIKI-HGLYVEINCKVIPSDSFSAHADRSDLMTWLKQAPEIPKRMFLV 419
Query: 430 HGESHEMGRLKTKLMTEL 447
HGE L+ ++ EL
Sbjct: 420 HGEPVAADELRKRIDKEL 437
>gi|406928311|gb|EKD64136.1| hypothetical protein ACD_51C00065G0005 [uncultured bacterium]
Length = 465
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 124/448 (27%), Positives = 224/448 (50%), Gaps = 42/448 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGI-----HPAYSGMAALPYFDEIDPSAIDVLLITHF 84
GA EV S GK +LFDCG A + LP+ +PS + ++++H
Sbjct: 7 GAAREVTGSKHMFVANGKKVLFDCGSFQGRRDEARAKNEKLPF----NPSELTAVVLSHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------- 131
H+DH+ +LP + K FKG ++ T ATK + +L D + + +
Sbjct: 63 HIDHSGNLPTLV-KQGFKGPIYCTAATKDLCDYMLRDSAFIQEKEAQYINEKKAKKGEPP 121
Query: 132 -DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG-----V 184
+ L+ E+D + ++ ++ ++F++ E+ G AGH+LGAA+ +++
Sbjct: 122 IEPLYTEKDADDAIKQLREVNFNEKTEIYPGFSVTFREAGHILGAALIEIEVIDENAQLK 181
Query: 185 RVLYTGDYSREEDRHLRAA-ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
++++TGD R+ LR E+P+ +I I ESTYG +LH+ E + ++I+ T +
Sbjct: 182 KIVFTGDLGRKGLPLLRDPYEVPE--AEILITESTYGNRLHESFVDAESKLAEIINKTAA 239
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GG+++IPAFAL R QE++ L++ N ++P+Y SPLA V++ + ++
Sbjct: 240 KGGKLIIPAFALERTQEIVYSLNKLSKNGKIPQDLPVYVDSPLAVNVTEVFKKHKEFYDQ 299
Query: 304 RIRNQFAN--SNPFKFKHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+F N +PF F ++ + S+DD + +GP +++++ G + G
Sbjct: 300 ETLKEFVNDKQDPFSFARLTYITSVDDSKALNNHIGPCIIISASGMCEFGRILHHLRNNI 359
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTST 416
D +N +I GY+ E TL + ++ + ++V + G +N V I ++SAHAD + +
Sbjct: 360 EDHRNTVLIVGYMAENTLGRKLLEKERKVNIF-GKPYEVNCTVEVIDAYSAHADRSDLLS 418
Query: 417 FLKELMP-PNIILVHGESHEMGRLKTKL 443
F + + LVHGE K L
Sbjct: 419 FATHIKGIKKVFLVHGEEKAQMAFKDAL 446
>gi|393794892|ref|ZP_10378256.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 658
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 215/432 (49%), Gaps = 24/432 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVLLITHFH 85
LG ++VGRSC+ +S IL DCGI+P A M + P D +D + +D ++I H H
Sbjct: 206 LGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDITLDELDAVVIGHAH 265
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 266 LDHTGFLPA-LCKFGYKGPIYCTEPTLPMMNLIQLDAIKVASAQGRTPMYAERDVKQIMK 324
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 325 QAITLPYSTVTDISPDIKLVFANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 384
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG + + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 385 ASWNFPRVETLLIESTYGAKEDIQPTRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 444
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A+++ Y + ++ + + NPF +
Sbjct: 445 IMMVIDHYMKSG-EMVEAPVFTEG-MISEASAIHEAYPEYLARELKQKILETDDNPFDSE 502
Query: 319 HISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D D P +++A+ G L+ G + F DKKN + Y V GT
Sbjct: 503 YFTNIEHADAREEPMRDNSPCIILATSGMLEGGPVLEYFKNIAPDKKNKVLFVSYQVNGT 562
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
+ + ++ K+VT++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 563 MGRRVLDGSKQVTMLGKEGKVEVVTINCSVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 622
Query: 428 LVHGESHEMGRL 439
+ HGE + L
Sbjct: 623 VNHGERRKSENL 634
>gi|329766104|ref|ZP_08257663.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137375|gb|EGG41652.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 645
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 215/432 (49%), Gaps = 24/432 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVLLITHFH 85
LG ++VGRSC+ +S IL DCGI+P A M + P D +D + +D ++I H H
Sbjct: 193 LGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDITLDELDAVVIGHAH 252
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 253 LDHTGFLPA-LCKFGYKGPIYCTEPTLPMMNLIQLDAIKVASAQGRTPMYAERDVKQIMK 311
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 312 QAITLPYSTVTDISPDIKLVFANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 371
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG + + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 372 ASWNFPRVETLLIESTYGAKEDIQPTRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 431
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A+++ Y + ++ + + NPF +
Sbjct: 432 IMMVIDHYMKSG-EMVEAPVFTEG-MISEASAIHEAYPEYLARELKQKILETDDNPFDSE 489
Query: 319 HISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D D P +++A+ G L+ G + F DKKN + Y V GT
Sbjct: 490 YFTNIEHADAREEPMRDNSPCIILATSGMLEGGPVLEYFKNIAPDKKNKVLFVSYQVNGT 549
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
+ + ++ K+VT++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 550 MGRRVLDGSKQVTMLGKEGKVEVVTINCSVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 609
Query: 428 LVHGESHEMGRL 439
+ HGE + L
Sbjct: 610 VNHGERRKSENL 621
>gi|296135911|ref|YP_003643153.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
gi|295796033|gb|ADG30823.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
Length = 460
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 218/469 (46%), Gaps = 48/469 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-------IDPSAIDVLLIT 82
GA V SC + +GK +L DCG+ + G L DE DP +ID+LL+T
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHEL---DEENAEDFGFDPKSIDLLLLT 60
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-------- 134
H HLDH +P L K F+G + T AT+ + +++L D + + E
Sbjct: 61 HAHLDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAERNTRHAHRRGD 119
Query: 135 FDEQDINRSMDKIEVLDFH-------QTVEVN-GIKFWCYTAGHVLGAAMFMVDI----A 182
Q + ++D + L+F QT+E+ G+ + AGH+LG+A ++ A
Sbjct: 120 AQAQPLYTTLDALNALEFFGRTAVYGQTLELAPGLSATFFDAGHILGSASIRIEQTASGA 179
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242
V+++GD LR +LP + D ++E+TYG +LH+P I T+
Sbjct: 180 HRSVIFSGDLGNGGHAVLRDPQLPPRA-DSVVMETTYGDRLHKPIEPSIAELFAAISETL 238
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
+GG V+IP FAL RAQE+L L E +P++ SP+A +++ +
Sbjct: 239 KRGGNVVIPTFALERAQEILFYLREGLEAGKLPRTLPVFLDSPMAISATEIFRHHPECYG 298
Query: 303 ERIRNQF-ANSNPFKFKHI----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
I F A S+PF + +SI VG +V+MA G G R
Sbjct: 299 NAIDALFRAGSDPFSLPGLRFTREAADSIALNRLVGGAVIMAGSGMATGGRVRHHLRHNL 358
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTST 416
+++ V GY GTLA+ +I K+V L G P++ +++ I+ FSAHAD +
Sbjct: 359 GRHESSVVFVGYAARGTLARLLIDGAKKVKLF-GEEIPVHARLYTINGFSAHADQRELLA 417
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ + L P ILVHG+ H M L NT++ PK +++
Sbjct: 418 WQQALKPEQTILVHGDPHSMDAFAALLK------NTRVQRPKQGDVIDL 460
>gi|407465689|ref|YP_006776571.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407048877|gb|AFS83629.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 646
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 213/425 (50%), Gaps = 24/425 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVLLITHFH 85
LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D ++I H H
Sbjct: 194 LGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDELDAIVIGHAH 253
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 254 LDHTGFLPT-LCKYGYKGPIYCTEPTLPMMNLIQLDAIKVASAQGRTPIYSERDVKQIMR 312
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 313 QTITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 372
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG++ + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 373 ASWNFPRVETLLIESTYGLKEDIQPTRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 432
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A++++Y + ++ + + NPF +
Sbjct: 433 IMMVIDHYMKSG-EMVEAPVFTEG-MISEASAIHESYPEYLARELKQKILETDDNPFDSE 490
Query: 319 HISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D D P +++A+ G L+ G + F DKKN + Y V GT
Sbjct: 491 YFTNIEHADAREEPMRDNSPCIILATSGMLEGGPVLEYFKNIAPDKKNKVLFVSYQVNGT 550
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
L + ++ K+ T++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 551 LGRRVLDGSKQATMLGKEGKVEVVSINCGVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 610
Query: 428 LVHGE 432
+ HGE
Sbjct: 611 VNHGE 615
>gi|448629175|ref|ZP_21672574.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
gi|445757741|gb|EMA09082.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
Length = 640
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/477 (26%), Positives = 230/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P+++D +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSLDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLRDVINEAHE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G++LIPAFA+GR+QEL+L+L+E + +P+Y + ++ A++ Y + +
Sbjct: 409 NDGKILIPAFAVGRSQELMLVLEEAMREG-DIPTMPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + ++ D D +D P++++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFEQVDGGDEMRQDIADDEPAIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
SD + GY EGTL + I E+TL + + P L M + + FS HAD
Sbjct: 527 SDPDSTMAFVGYQAEGTLGRQIQRGQDEITLGD-TSGPRAERVSLKMNIETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG++ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDASTTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|242398880|ref|YP_002994304.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
gi|242265273|gb|ACS89955.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
Length = 648
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 221/444 (49%), Gaps = 33/444 (7%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------I 71
+ D + IT LG EVGRS + + +L D G++ A LP+F+ +
Sbjct: 182 KSDWIRITALGGFREVGRSALLLQTNESFVLVDFGVNVAELNDPKKGLPHFEAPEFTYVL 241
Query: 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
+D +++TH HLDH+ LPY F G ++ T T+ + LL D++++ + +
Sbjct: 242 KERLLDAIIVTHAHLDHSGLLPYLFRYNLFDGPIYTTPPTRDLMILLQKDFIEIQQSNGV 301
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLY 188
+ L+ +DI + LD+ + +++ ++ + AGHVLG+A+ + + +
Sbjct: 302 EPLYRMKDIKEVVKHTIALDYGEVRDISPDLRLTLHNAGHVLGSAIAHLHVGNGLHNIAV 361
Query: 189 TGDYSREEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQ 244
TGD+ R A + P+ + I+ESTYG PR EK+ + I TI +
Sbjct: 362 TGDFKFAPTRLFEPANSKFPRL--ETLIMESTYGGSRDYQMPREEAEKKLIETIMHTIKR 419
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
G+VLIPA A+GR+QE+++ L++Y +PIY + + A++ Y +++
Sbjct: 420 KGKVLIPAMAVGRSQEIMIALEDYARVG--GFEVPIYLDG-MIWEATAIHTAYPEYLSKN 476
Query: 305 IRNQFANS--NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCS 358
+RNQ + NPF + P+ + ++ D+ P++++AS G L G S + F
Sbjct: 477 LRNQIFHEGYNPFLNEIFKPVANANERKDIIESEEPAIIIASSGMLVGGPSVEYFKHLAP 536
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLM--NGLTAP--LNMQVHYI-SFSAHADYAQ 413
D +N+ V Y EGTL + + +E+ ++ G T +NM++H I FS HAD +
Sbjct: 537 DPRNSLVFVSYQAEGTLGRQVQRGLREIPMIGEGGKTEAIQINMEIHTIDGFSGHADRRE 596
Query: 414 TSTFLKEL--MPPNIILVHGESHE 435
++ + P +I VHGE +
Sbjct: 597 LMNYISRVRPRPERVITVHGEPQK 620
>gi|344212168|ref|YP_004796488.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
gi|343783523|gb|AEM57500.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
Length = 640
Score = 175 bits (444), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 127/477 (26%), Positives = 230/477 (48%), Gaps = 38/477 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID--- 72
P + + D + +T LG EVGR+ +S IL DCG P G +PY +
Sbjct: 174 PTTSDEDWVRLTTLGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALA 231
Query: 73 --PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
P+++D +++TH HLDH+A +P K + G ++ T T+ + LL DY+ V+
Sbjct: 232 AGPNSLDAVVLTHAHLDHSALIPILF-KYGYDGPIYTTAPTRDLMGLLQLDYLDVASKEG 290
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVL 187
++ Q + ++ L+F ++ IK + AGH+LG+A+ F + V
Sbjct: 291 RTPPYESQQVRDALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVA 350
Query: 188 YTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTIS 243
++GD ++ R L A + P+ + ++ESTYG + ++ E+ DVI+
Sbjct: 351 FSGDIHYKDTRLLDGAVNDFPRV--ETLVLESTYGGKNDYQTDQSDSERVLRDVINEAYE 408
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G++LIPAFA+GR+QEL+L+L+E + +P+Y + ++ A++ Y + +
Sbjct: 409 NDGKILIPAFAVGRSQELMLVLEEAMRKG-DIPTMPVYLDG-MIREATAIHTAYPEYLRD 466
Query: 304 RIRNQ--FANSNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+R + + + NPF + ++ D D +D P++++ + G + G +
Sbjct: 467 DLRQRILYEDENPFLAEQFEQVDGGDEMRQDIADDEPAIILTTSGMVTGGPVMSWLRLLG 526
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP------LNMQVHYI-SFSAHAD 410
SD + GY EGTL + I E+TL + + P L + V + FS HAD
Sbjct: 527 SDPDSTMAFVGYQAEGTLGRQIQRGQDEITLGD-TSGPRAERVSLRLNVETVDGFSGHAD 585
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+F++ + P I+ VHG++ +L + L + N + PKN ++ +
Sbjct: 586 RQGLESFVETMHPRPEKILCVHGDASTTNQLSSALYQKF---NMRTHNPKNLETFRL 639
>gi|19881000|gb|AAM00627.1| unknown [Legionella pneumophila]
Length = 470
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 220/454 (48%), Gaps = 39/454 (8%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSA 75
G ++ +T LGA V S ++ K IL DCG+ Y + A LP IDP
Sbjct: 15 GGKMKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHD 70
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV---------- 125
ID ++ITH H+DH+ LP L K F+G+++ T TKA+ +LL D +
Sbjct: 71 IDAVIITHAHIDHSGYLP-LLVKNGFQGKIYTTPGTKALCSILLPDSGHLQEEEARLANK 129
Query: 126 ---SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDI 181
SK L+ E++ +++ E +DF ++ + F + AGH++GAAM +
Sbjct: 130 YGFSKHKPALPLYTEKEAQTALNYFETIDFDTPHQLFHDFSFEYHRAGHIVGAAMVKIKT 189
Query: 182 AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHST 241
+++TGD R D ++A Q + D ++ESTYG +LH + + VI+ T
Sbjct: 190 QKGSIVFTGDIGRPYDPVMKAPAFIQET-DYLVMESTYGDRLHDATDPLPQ-MAQVINQT 247
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+ +GG V+IPAFA+GRAQ LL + E NIP++ SP MA+ T++L
Sbjct: 248 VKRGGSVIIPAFAVGRAQSLLYFIYELKRQGAIPKNIPVFLDSP-----MAIDATHLLCT 302
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWC 357
+ + A + + +N+ ++ ++ P +++A+ G Q G ++
Sbjct: 303 YKEDHHLTAEQCQGLCRIATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKVFA 362
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTST 416
D K+ + G+ GT I++ ++V + +G P+ QV +S SAHADY +
Sbjct: 363 PDPKSTLLFTGFQAGGTRGARIVNGERQVKI-HGSLIPIRAQVVVMSSTSAHADYQELLG 421
Query: 417 FLKELM--PPNIILVHGESHEMGRLKTKLMTELA 448
+LK P + + HGE H LK K+ +
Sbjct: 422 WLKHFARPPKKVFITHGEPHSAQSLKEKIEKQFG 455
>gi|254168266|ref|ZP_04875112.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|254168398|ref|ZP_04875243.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289595800|ref|YP_003482496.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
gi|197622679|gb|EDY35249.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|197622775|gb|EDY35344.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289533587|gb|ADD07934.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
Length = 647
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 217/447 (48%), Gaps = 35/447 (7%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA----ALPY------FD 69
G+Q + + LG EVGRS + + +L DCG++ A S A PY +D
Sbjct: 176 GEQWVRVEALGGYREVGRSATLIMTRTSRVLVDCGLNVAVSDKADPWSGAPYLYVPEVWD 235
Query: 70 EIDPSA----IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
DP ID +++TH HLDH +P L K + G V+MT T+ + +LL DYVKV
Sbjct: 236 ASDPEKPFKHIDAVVVTHAHLDHVGLVP-LLFKYNYDGPVYMTAPTRDLAAMLLIDYVKV 294
Query: 126 SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIA 182
++ + + ++ + I + L + +T ++ I+ + AGH+LG+++ F +
Sbjct: 295 AQSEGKKVPYESKHIKEMIKHTITLKYGETTDIAPDIRLTFHNAGHILGSSVSHFHIGEG 354
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY-GVQLHQP-RNIREKRFTDVIHS 240
++ TGD E AA + I+ESTY G + QP R +R DV+
Sbjct: 355 LYNIVITGDIKYERSWLFNAAHNRFPRVETVIMESTYGGREDFQPSRREAAERLKDVVMR 414
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T +GG++LIP FA+GR+QE++L+L+ + N E +PIY + + ++ Y
Sbjct: 415 TYDKGGKILIPVFAVGRSQEVMLVLESFMRNG-ELPEMPIYLDG-MIWEATTIHAAYPEY 472
Query: 301 MNERIRNQF--ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFD 354
+N+ +R NPF + S++ +V P +V+++ G + G + F
Sbjct: 473 LNKDLRELIFQKKENPFLSPIFHRVESVERREEVISSSDPLIVLSTSGMMNGGPVLEYFK 532
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYI-SFSAHAD 410
W D +N V GY GTL + I + KEV + G T + M + I FS H+D
Sbjct: 533 HWADDPRNTLVFVGYQAVGTLGRRIQNGLKEVLMSLGGKPFTVKVEMNIETIDGFSGHSD 592
Query: 411 YAQTSTFLKEL--MPPNIILVHGESHE 435
Q ++ + P +I+ HGE ++
Sbjct: 593 RRQLVQYISSMNPKPERVIICHGEENK 619
>gi|13541495|ref|NP_111183.1| metal-dependent RNase [Thermoplasma volcanium GSS1]
gi|14324879|dbj|BAB59805.1| cleavage and polyadenylation specificity factor [Thermoplasma
volcanium GSS1]
Length = 639
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 215/442 (48%), Gaps = 33/442 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCG---IHPAYSGMAALPYF--DEIDP-SAIDVL 79
+T LG +EVGRS +S K +L DCG + P A PY E+ P S+ID +
Sbjct: 182 LTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLSSIDAV 241
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
++TH HLDH+ LP L K + G V+MT T+ + LL DY+KV+++ + ++ +
Sbjct: 242 ILTHAHLDHSGLLP-LLFKYGYDGPVYMTQPTRDLAVLLQDDYIKVARMEGGKVPYESKY 300
Query: 140 INRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREE 196
I + L + +T ++ ++ Y AGH+LG+A + I V+ +GD E+
Sbjct: 301 IREELKHTITLRYGETTDITRDMRLTFYNAGHILGSASVHLHIGDGLYNVVLSGDVKFEK 360
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
A + + ESTYG + R + DVI+ T +GG VLIP FA
Sbjct: 361 TWLFNPANNKFPRAETFMTESTYGGRDDYSFTREEATETLVDVINRTHDRGGSVLIPVFA 420
Query: 255 LGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--A 310
+GR+QE++++L++ N P+ + Y + + A++ Y +N+ +R
Sbjct: 421 VGRSQEVMIVLEDAMRNGRIPQMN----VYLDGMIMEATAIHAAYPEYLNKELREAIMVR 476
Query: 311 NSNPFK---FKHISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF FK + +D + D VV+A+ G + G + F W + K+ V
Sbjct: 477 KENPFLSQIFKKVETREQREDIAEDPESKVVLATSGMMNGGPVMEYFKAWAGNPKHTLVF 536
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYI-SFSAHADYAQTSTFLKELM 422
GY +GT+ K I S KEVT+ G +T +NM V FS H+ Q ++ +
Sbjct: 537 VGYQADGTMGKRIQSGAKEVTISEGGKTVTYQINMDVETAEGFSGHSTKKQLLAYIATMQ 596
Query: 423 P-PNIILV----HGESHEMGRL 439
P P ILV +G++ E RL
Sbjct: 597 PKPKKILVNHGDNGKTAEFARL 618
>gi|124485834|ref|YP_001030450.1| ADP-ribosylation/crystallin J1 [Methanocorpusculum labreanum Z]
gi|124363375|gb|ABN07183.1| beta-lactamase domain protein [Methanocorpusculum labreanum Z]
Length = 636
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 136/470 (28%), Positives = 226/470 (48%), Gaps = 32/470 (6%)
Query: 18 SREGDQ-LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDP- 73
R+ DQ L +T LG +VGR+ +S +L DCG P +G A+ PY + EI P
Sbjct: 176 GRDHDQWLRLTTLGCCRQVGRAAFLLSTPESKVLIDCGESPGATGAASSPYLNVPEIYPF 235
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
+ +D +++TH HLDH+A +P L + + G V+ T AT+ + +L DY+ V+
Sbjct: 236 TNLDAVVLTHAHLDHSAFIP-LLYRYGYDGPVYTTPATRDLATMLQLDYLDVNNKEDRAP 294
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTG 190
+ +I + L + ++ +K + AGH+LG+A+ F V V +TG
Sbjct: 295 PYSSNEIREFVKHTIALGYGDVTDIAPDMKLTLHNAGHILGSAIAHFNVGNGVYNVAFTG 354
Query: 191 DYSREEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGG 246
D + R A + P+ + +IESTYG R E+R +VI+ T+ +GG
Sbjct: 355 DLFYGKSRLFNPAVSQFPRL--ESLVIESTYGGSDDFSPSRVEAEERLYEVINETLGRGG 412
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIP--IYYASPLAKKCMAVYQTYILSMNER 304
+VLIPAFA+GR+QEL+L ++E N + IP Y + K+ A++ Y +N
Sbjct: 413 KVLIPAFAVGRSQELMLAIEEGMRN----NRIPKCKVYLDGMIKEATAMHTAYPEYLNTD 468
Query: 305 IRNQF--ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCS 358
+RN N NPF ++S D V P V++++ G + G +
Sbjct: 469 LRNLIFRDNYNPFLADCFEQVDSYDKRQQVIFSEDPCVIISTSGMMNGGPVIEYLSNLAE 528
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
KN V GY EGT + I +EV + T +NM++ + FS HAD Q +
Sbjct: 529 SPKNMIVFVGYQAEGTYGRRIQKGWREVPIGKRGTIVINMEIQTVEGFSGHADRKQLMNY 588
Query: 418 LKELMPP--NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
++ + P + +HGE + + + + + + + P+N ++ M
Sbjct: 589 VQYVQPKPERVFTIHGEESKTIDFASSIYKKF---HIQTVAPQNLETYRM 635
>gi|336122441|ref|YP_004577216.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
gi|334856962|gb|AEH07438.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
Length = 427
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 217/446 (48%), Gaps = 35/446 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGI-----HPAYSGMAALPYFDEIDPSAIDVLLITHF 84
G EVGRSC+ + I DCG+ +P Y P FD+I P A+ ++H
Sbjct: 7 GGAMEVGRSCIEVRSDKSNIFLDCGVKLSEDNPEY------PVFDKIHPDAV---FVSHA 57
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH SLP L V+ T TKAI K LL D +K+ ++ F++ DIN +
Sbjct: 58 HLDHTGSLP-ILSHLHMHCPVYTTSMTKAITKELLRDSLKIGIEENRELPFNKGDINNIL 116
Query: 145 DKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA-GVRVLYTGDYSREEDRHLRAA 203
+ + + + + ++ Y AGH+ G+A ++ G +++YTGD + R + A
Sbjct: 117 HHHKYVKYGEIYNIRDFEYIYYDAGHIPGSASIYLNYNNGKKIVYTGDIKLSKTRLTKGA 176
Query: 204 ELPQFSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
+L DI IIESTYG +LH R EK F + + T+ +GG +IP FA+ R+QE+
Sbjct: 177 DLSYCDNDIDILIIESTYGNRLHPNRKQLEKEFLNKVKETVERGGTAIIPVFAVDRSQEV 236
Query: 262 LLILDEYWSNHPEFHNIPIYYASPLAK--KCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
+L+L++ ++PIY+ K K M L +++++ F SN + ++
Sbjct: 237 ILMLNDLDL------DVPIYFDGLGVKITKIMLGQHPKYLRNHKKLKRAF--SNTYTVEN 288
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
I D + G +++++ G L G + + +D K++ + GY V+ T A I
Sbjct: 289 EERHYVIKDLKENG-GIIVSTAGMLNGGPVIKYISNFWNDPKSSLIFTGYQVKNT-AGRI 346
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+ E ++ + + P ++ + FSAHA + T +K+ P +I+ HGE +
Sbjct: 347 LLETGKLPIGEMMVEP-KFEISFYEFSAHAGMDELRTVVKKANPEILIIQHGEEEAINVF 405
Query: 440 KTKLMTELADCNTKIITPKNCQSVEM 465
K + E K TPK C +++
Sbjct: 406 KEWAIEE----GFKTYTPKLCDRIDI 427
>gi|355571913|ref|ZP_09043121.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
gi|354825009|gb|EHF09244.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
Length = 629
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 129/430 (30%), Positives = 210/430 (48%), Gaps = 22/430 (5%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVL 79
DQ + +T LG EVGR+ +S +L DCG P S Y EI P S +D +
Sbjct: 176 DQWVRVTMLGCCREVGRAAFLLSTPESRVLIDCGEKPDNSASTPYLYVPEIHPLSQLDAV 235
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
++TH HLDH A +P L K + G V+ T T+ + +L DY+ V + + +
Sbjct: 236 VLTHAHLDHCALVP-LLFKYGYDGPVYSTPPTRDLSAMLQLDYLDVVSKEDRKIPYSSNE 294
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREE 196
+ + L++ ++ IK + AGH+LG+A+ F + + +TGD++ +
Sbjct: 295 VKSYIKHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHIGDGLYNIAFTGDFNFSK 354
Query: 197 DRHLRAAELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
R A + I+ESTYG + R E++ + +++TI +GG+V+IPAFA
Sbjct: 355 SRLFNPATCNFPRLEALIMESTYGGSGDIQPTRAEAEEKLYETVNNTIRRGGKVIIPAFA 414
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIY--YASPLAKKCMAVYQTYILSMNERIRNQF--A 310
+GR+QE++L L+E IP Y + ++ A++ TY +N +R Q
Sbjct: 415 VGRSQEVMLALEEGMRR----QKIPTVKIYLDGMIREATAIHTTYPEYLNSELRTQIFKE 470
Query: 311 NSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
+ NPF P++S + V P V++ + G L G + SD+KNA V
Sbjct: 471 DHNPFLADCFIPVDSSELREKVIRGDPCVIITTSGMLNGGPVMEYLSNLASDEKNALVFV 530
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM--PP 424
GY EGTL + I +EV + T +N+++ I FS H+D Q +F+ + P
Sbjct: 531 GYQAEGTLGRRIQKGWREVPIGRKGTIVINLEIVTIDGFSGHSDRKQLMSFIAHVQPRPE 590
Query: 425 NIILVHGESH 434
I VHG+ +
Sbjct: 591 KIFTVHGDEN 600
>gi|432328821|ref|YP_007246965.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
gi|432135530|gb|AGB04799.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
Length = 647
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 215/445 (48%), Gaps = 35/445 (7%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-------YSGMAAL---PYFD 69
G+Q + + LG EVGRS + + +L DCG+ A +SG L +D
Sbjct: 176 GEQWVRVEALGGYREVGRSATLLMTRTSRVLVDCGLDVAAVNQEGPWSGAPYLYVPEVWD 235
Query: 70 EIDPSA----IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
+ DP ID +++TH HLDH +P L K + G V+MT T+ + +LL DYVKV
Sbjct: 236 QSDPENPFKHIDAVVVTHAHLDHVGLVP-LLFKYNYDGAVYMTAPTRDLAAMLLIDYVKV 294
Query: 126 SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIA 182
++ + + ++ + I + L + +T ++ I+ + AGH+LG+A+ F +
Sbjct: 295 AQSEGKKVPYESKHIKEMIKHTITLKYGETTDIAPDIRLTFHNAGHILGSAISHFHIGNG 354
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY-GVQLHQP-RNIREKRFTDVIHS 240
V+ TGD E AA + I+ESTY G + +QP R +R D++
Sbjct: 355 LYNVVITGDIKFERSWLFNAAHNRFPRVETVIMESTYGGREDYQPSRREAAERLKDIVSR 414
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
T +GG++LIP FA+GR+QE++L+L+ + N E IPIY + + ++ Y
Sbjct: 415 TFERGGKILIPVFAVGRSQEVMLVLESFMRNG-ELPEIPIYLDG-MIWEATTIHAAYPEY 472
Query: 301 MNERIRNQF--ANSNPFK---FKHISPLNSIDD-FSDVGPSVVMASPGGLQSGLSRQLFD 354
+N+ +R NPF F + ++ S P++V+++ G + G + F
Sbjct: 473 LNKDLRELIFQKKENPFLSPIFHRVESSERREEVISSSDPAIVLSTSGMMNGGPVLEYFK 532
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYI-SFSAHAD 410
W D +N + GY GTL + I + EV + G +T + M + I FS H+D
Sbjct: 533 HWADDPRNTLIFVGYQAVGTLGRRIQNGLSEVLMSLGGKPITIKVEMNIETIDGFSGHSD 592
Query: 411 YAQTSTFLKEL--MPPNIILVHGES 433
Q F+ + P II HGE
Sbjct: 593 RRQLVQFIGSMNPKPERIITCHGEE 617
>gi|193084111|gb|ACF09778.1| beta-lactamase domain protein [uncultured marine crenarchaeote
KM3-153-F8]
Length = 422
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/417 (28%), Positives = 204/417 (48%), Gaps = 31/417 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGA EVGRS + + K I+ D GI + P + +P +D ++++H H
Sbjct: 3 ITTLGASREVGRSAFLVEIEDKKIILDFGIMVKRPTL--FPLY--TNPKEVDAVILSHAH 58
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK-VSVEDMLFDEQDINRSM 144
LDH+ ++P F V+ T A+ I KLL+ D++ +S V+ + + F ++ + M
Sbjct: 59 LDHSGAIPSFFVSNNID--VYCTSASADISKLLIDDFINLSNDVTKQYIPFQHLELKKMM 116
Query: 145 DKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
D I+ ++ +Q E+ IK AGH+ G+A +++ G R+ YTGD + ++ ++ A+
Sbjct: 117 DNIKRVELNQEFEIGNIKIKLINAGHIPGSASIIIEGEGKRIAYTGDINAQDSSLVQGAD 176
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
D+ I ESTYG+ H R E F +GG +L+PAFA+GR+QE+
Sbjct: 177 TNYGELDLLITESTYGLNDHPERKDVENEFVSFAKEITDKGGTLLVPAFAVGRSQEIACT 236
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLN 324
L++ HN ++ P+A MA+ IL N +S F K + L
Sbjct: 237 LND--------HN----FSKPVAMDGMALKTNEILKNNLEC---LKDSKAF-LKTLDELM 280
Query: 325 SIDDFSDVG-----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379
+ ++ PSV++A G + GLS D DKKNA + + VEGT + +
Sbjct: 281 IVKNWKQRKELLRTPSVIIAPAGMMVGGLSSFYKDGIIMDKKNAISLVSFQVEGTPGRML 340
Query: 380 ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM-PPNIILVHGESHE 435
+ K++ +N + + + +FS+H+ + + + P I+ VHGE +
Sbjct: 341 LE--KKMIRINNKLKKIKGKFEHFNFSSHSGNKELFEMISRIKGEPTIVAVHGEEEQ 395
>gi|428304260|ref|YP_007141085.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245795|gb|AFZ11575.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 782
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 136/432 (31%), Positives = 210/432 (48%), Gaps = 30/432 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPS 74
P S ++LI+TPLGA +G SC + I+ D G P G LP F+ + +P
Sbjct: 188 PDSPHKNRLIVTPLGAARSIGASCFRVLIGPYEIVLDAGTRP--KGSNPLPAFEHLKNP- 244
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGR-VFMTHATKAIYKLLLTDYVKVSKVSVE-D 132
+++LITH H DH +LP F ++ F + T T+ I ++LTD +KV + + + +
Sbjct: 245 --NLILITHAHQDHIGALPVFHQR--FPATPMICTAGTREIAHVMLTDCLKVQQSNEDFE 300
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
LFDE D+++++ +++ Q E + G+K AGH++GAA + +LYTGD
Sbjct: 301 QLFDEIDLDQTLFQLQTQPVGQDFEPLPGLKVRFIHAGHIVGAACVYIRYGDRSLLYTGD 360
Query: 192 YSREEDRH---LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
Y+ R LR A+LPQ DI I ESTYG H R +E + +S GG V
Sbjct: 361 YNTTNSRTTDGLRLADLPQ--ADILITESTYGADTHPSRKAQETELLQAVAEVVSHGGNV 418
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPI-YYASPLAKKCMAVYQTYILSMNERIRN 307
LIPAFALGRAQE++L + FH + I Y L + V++ +I + ++N
Sbjct: 419 LIPAFALGRAQEIILAI----RTSALFHKLKIPVYIDGLVRAVTDVFRDHIDFLPGSVQN 474
Query: 308 QFANSNPF----KFKHISPLNSIDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
PF I P+ + + PSV++AS G L G S
Sbjct: 475 FALQQEPFFDPDGKPPIIPIGHPRERPLAIAKPSVIIASSGMLSGGASVYYGQALLERDN 534
Query: 362 NACVIPGYVVEGTLAKTI--ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
A I GY E + + + + + EV + G ++ V + SAHAD + +
Sbjct: 535 AAIFISGYTDEESPGRFLQALQKGDEVEI-EGKKLTVHATVRRFNLSAHADKVGLTQVIH 593
Query: 420 ELMPPNIILVHG 431
+ P ++IL+HG
Sbjct: 594 RVNPKHLILIHG 605
>gi|373458881|ref|ZP_09550648.1| RNA-metabolising metallo-beta-lactamase [Caldithrix abyssi DSM
13497]
gi|371720545|gb|EHO42316.1| RNA-metabolising metallo-beta-lactamase [Caldithrix abyssi DSM
13497]
Length = 469
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 218/451 (48%), Gaps = 47/451 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE------IDPSAIDVLLITH 83
GA EV S ++ +G+ I+ DCG A+ G DE + S + ++TH
Sbjct: 9 GAAQEVTGSKHFIKVQGRQIMIDCG---AFQGKRKEA--DEKNRNWSFNASEVHAAILTH 63
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------- 133
H DH+ LP + K ++G V+ T A++ + L++ D + +E +
Sbjct: 64 AHFDHSGLLPLLI-KNGYEGNVYSTPASRDLSSLIMMDSAHIQAKDIEFLKKKAKKRGEV 122
Query: 134 -----LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDI----AG 183
L+ E D+ R++D + +H+ V G+K Y AGH+LG+A +++I
Sbjct: 123 FEKQPLYTEDDVARTLDHFITVSYHRPFWVEEGVKATFYDAGHILGSASILLEINRNGQQ 182
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHST 241
+R+ ++GD R ++L P+ PD+ I+ESTYG +LH P + +VI+ T
Sbjct: 183 MRIGFSGDLGR---KNLPIIRDPEVLPDVDYLIMESTYGHRLHDPIESAMDKLAEVINRT 239
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+GG+++IPAFA+ R QEL+ + + + IP+Y SP+A A+++ +
Sbjct: 240 AERGGKIIIPAFAVERTQELIYFI-HLLHDQKKIPEIPVYVDSPMAVNATAIFRVHQECY 298
Query: 302 NERIRNQFA--NSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
++ R F + NPF F + + ++++ + P+++++S G ++G
Sbjct: 299 DQETREAFLQHHKNPFGFNEVRYITNVEESKKLNGLTEPAIIISSSGMCEAGRILHHLAN 358
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
+ +N +I G++ E TL + I E EV + V +FSAHADY++
Sbjct: 359 NIENPRNTIMIVGFMAEHTLGRRIKEEQPEVKIFGEYYKLKAEVVTMNAFSAHADYSEIM 418
Query: 416 TFLKEL---MPPNIILVHGESHEMGRLKTKL 443
++++L I LVHGE LK L
Sbjct: 419 EYVEQLNFKKLKRIFLVHGEPDAQANLKKLL 449
>gi|159904868|ref|YP_001548530.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159886361|gb|ABX01298.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 433
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 211/433 (48%), Gaps = 22/433 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ ++ + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVEVKTEKSTVLFDCGVKLSHE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+P + K ++ T TKAI K LL D +K++ V +D+ +D D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGVEGQDIPYDRADVNKSLNLFRK 121
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++ +F + AGH+ G++ ++ +G RV+YTGD + ++ A+L
Sbjct: 122 ARYNHPKNFKDFEFEFFNAGHIPGSSTISLNYSGKRVVYTGDTKVSDTDLVKGADLSYTK 181
Query: 210 PDIC--IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
DI I+ESTYG + R EK F + I T+ +GG L+P FA+ R+QE+L+IL
Sbjct: 182 EDIACLIVESTYGDTNQENREEAEKNFINKIKETLERGGIPLVPVFAVDRSQEILIIL-- 239
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN--ERIRNQFANSNPFKFKHISPLNS 325
N +F +P+Y+ + +K + Y +N + ++ F N + K +
Sbjct: 240 ---NRHDF-GVPVYFDG-MGRKITRIMLQYPAFLNHPDDLKAAFLNVTEVESKDRPKI-- 292
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I + G +++++ G L+ G + + KN+ + GY VE T + ++ K
Sbjct: 293 IKEIRQNG-GIIVSTAGMLEGGPIIPYITEFMKEPKNSLIFTGYQVEETAGRHLLETGK- 350
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ ++ FSAH + + +K+ P +++ HGE + K ++
Sbjct: 351 -LEIGEFDVEPKFEIASYQFSAHGEMDELRHIVKKANPETLVIQHGEEEVVNVFKDWAVS 409
Query: 446 ELADCNTKIITPK 458
E + N K+ PK
Sbjct: 410 EGFNEN-KVFAPK 421
>gi|340623619|ref|YP_004742072.1| rhodopsin-like GPCR superfamily protein [Methanococcus maripaludis
X1]
gi|339903887|gb|AEK19329.1| rhodopsin-like GPCR superfamily protein [Methanococcus maripaludis
X1]
Length = 433
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 217/433 (50%), Gaps = 22/433 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ + + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVELKTEKSTVLFDCGVKLSPE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLNLFRK 121
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++ +F + AGH+ G++ ++ G RV+YTGD + ++ A+L
Sbjct: 122 ARYNHPKNFKDFEFEFFNAGHIPGSSTISLNYGGKRVVYTGDTKVSDTDLVKGADLSYTK 181
Query: 210 PDIC--IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
DI I+ESTYG + + R EK F + I T+ +GG L+P FA+ R+QE+L+IL++
Sbjct: 182 EDIACLIVESTYGDKNQENREDAEKNFINKIKETLERGGIPLVPVFAVDRSQEILMILNK 241
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTY--ILSMNERIRNQFANSNPFKFKHISPLNS 325
+ +F +P+Y+ + +K + Y L+ + ++ F N + K +
Sbjct: 242 H-----DF-GVPVYFDG-MGRKITRIMLQYPKFLNHPDDLKAAFLNVIEVESKDRPKI-- 292
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I D G +++++ G L+ G + D KN+ + GY VE T + ++ E +
Sbjct: 293 IKDIKQNG-GIIVSTAGMLEGGPIIPYIHEFMEDPKNSLIFTGYQVEETAGRKLL-ETGK 350
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ + P +++ FSAH + + +K+ P +++ HGE + K ++
Sbjct: 351 IEIGEFDIEP-KLEIASYQFSAHGERDELREIVKKANPEVLVIQHGEEEVVKIFKEWTVS 409
Query: 446 ELADCNTKIITPK 458
+ + N+ + TPK
Sbjct: 410 QGFNENS-VFTPK 421
>gi|383320534|ref|YP_005381375.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
gi|379321904|gb|AFD00857.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
Length = 637
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 129/443 (29%), Positives = 223/443 (50%), Gaps = 29/443 (6%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDP- 73
P++ + + IT LG EVGRS +S IL DCG++ A S Y E+ P
Sbjct: 173 PITSKEQWIRITTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPL 232
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S+ID +++TH HLDH+ +P L K + G V+MT T+ + LL DY++V+ +
Sbjct: 233 SSIDAVVLTHAHLDHSGMIP-LLFKYGYDGPVYMTPPTRDLMALLQLDYIEVANREGKRP 291
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTG 190
+D I ++ L++ ++ I+ Y +GH+LG+A+ F + V ++G
Sbjct: 292 PYDSAMIRETLKHTITLNYGDVTDIAPDIRLTFYNSGHILGSAIAHFHIGEGLYNVAFSG 351
Query: 191 DYSREEDRHLRAA--ELPQFSPDICIIESTYGVQLH--QP-RNIREKRFTDVIHSTISQG 245
D+ E+ R A + P+ + ++E+TYG +H QP R E ++I T+ +G
Sbjct: 352 DFKYEKTRLFDPAVNQFPRI--ETMVMEATYG-GMHDIQPSRREAEMEIQNIIKKTLQRG 408
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G+VLIP FA+GR+QE++++L+E +P+Y + + A++ TY +N +
Sbjct: 409 GKVLIPTFAVGRSQEVMIVLEEAIRKG-FIDKVPVYLDG-MIWEATAIHTTYPEYLNVEL 466
Query: 306 RNQF--ANSNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
++ NPF F + SP +D P +V+A+ G + G + F + +D
Sbjct: 467 QDMIFHKGQNPFLSPAFVQVDSPQKREAILADPSPCIVLATSGMMNGGPVMEYFKQYGAD 526
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPLNMQVHYIS---FSAHADYAQT 414
KKN + GY EGT+ + I E+ + G T + +++ + FS H+D Q
Sbjct: 527 KKNTLIFVGYQAEGTMGRRIQKGWTEIPISTEGGKTEVMKVEMEVATVDGFSGHSDRRQL 586
Query: 415 STFLKEL--MPPNIILVHGESHE 435
++K + P II HG+ ++
Sbjct: 587 MEWVKRMDPRPERIITNHGDENK 609
>gi|386875398|ref|ZP_10117572.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
gi|386806797|gb|EIJ66242.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
Length = 646
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/425 (28%), Positives = 213/425 (50%), Gaps = 24/425 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPS--AIDVLLITHFH 85
LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D ++I H H
Sbjct: 194 LGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDELDAIVIGHAH 253
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 254 LDHTGFLPA-LCKYGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYAERDVKQIMR 312
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 313 QAITLPYGTVTDISPDIKLVFANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 372
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG++ + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 373 ASWNFPRVETLLIESTYGLKEDIQPTRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 432
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A++++Y + ++ + + NPF +
Sbjct: 433 IMMVIDHYMKSG-EMIEAPVFTEG-MISEASAIHESYPEYLARELKQKILETDDNPFDSE 490
Query: 319 HISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D D P +++A+ G L+ G + F DKKN + Y V GT
Sbjct: 491 YFTNIEHGDAREEPMRDNSPCIILATSGMLEGGPVLEYFKNIAPDKKNKVLFVSYQVNGT 550
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
L + ++ K+ T++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 551 LGRRVLDGSKQATMLGKEGKVEVVSINCGVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 610
Query: 428 LVHGE 432
+ HGE
Sbjct: 611 VNHGE 615
>gi|386854313|ref|YP_006258693.1| Beta-lactamase domain protein [Deinococcus gobiensis I-0]
gi|380002642|gb|AFD27829.1| Beta-lactamase domain protein [Deinococcus gobiensis I-0]
Length = 541
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 217/459 (47%), Gaps = 22/459 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG +EVG S K +L D G+ P G AALP + + +++TH HLDH
Sbjct: 6 LGGTDEVGASSYLYLLKEGNLLIDAGLRPGQVGEAALPKLEILGEHPPTAMVLTHAHLDH 65
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
A +P + + R++ T AT I L+L D +KVS M F +++ R+++++
Sbjct: 66 VAGIPVVIRRFP-DLRIYCTEATARIAGLVLADTLKVSTEQGFPM-FSPEELKRTLERLH 123
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELP-Q 207
+ + Q V +G F + +GH+LGAA +++ G V +TGD S + + AA LP Q
Sbjct: 124 PIPYFQRVSDHGFAFTLFPSGHLLGAASVLIESGGRSVFHTGDVSNVDTPVVNAAWLPAQ 183
Query: 208 FSP-DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
+P D + ESTYG L R + + F I T+ GG+VLIP+FALGRAQE+ IL
Sbjct: 184 VTPVDAVVSESTYGDTLLPSRKEQVRTFVAAIGETLRAGGKVLIPSFALGRAQEITQILQ 243
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP--FKFKHISPLN 324
++ ++P+Y L ++ Y+ + + + ++N+ +S F ++ +
Sbjct: 244 TGMASG-LLPSVPLYLDG-LTRQMTQTYEDLLPLLPQALQNRRQSSGQPVFLGGTVTLVG 301
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI- 379
D + GP+VV+AS G L +G S W + NA + GY + + +
Sbjct: 302 DRRDRERILASDGPAVVVASSGMLHAGASPVYARAWLPEAGNALFVVGYQDAESPGRRLL 361
Query: 380 -ISEPKEVTLMNGLTA----PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE-- 432
+ + +V L +G P +V SAHAD + P ++L HGE
Sbjct: 362 ELQQGGDVLLPDGRGGREPVPAYARVERFYLSAHADRGGLLGMIARYSPGKVLLTHGEVA 421
Query: 433 -SHEM-GRLKTKLMTELADCNTKIITPKNCQSVEMYFNS 469
H + G L TK EL + + + + NS
Sbjct: 422 PRHNLAGYLDTKYDVELPQAGQVVTLRDSGKRRGGFLNS 460
>gi|52841255|ref|YP_095054.1| metallo-beta lactamase [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52628366|gb|AAU27107.1| metallo-beta lactamase family [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 453
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 217/449 (48%), Gaps = 39/449 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A LP IDP ID ++
Sbjct: 3 LTFLGATETVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SK 127
ITH H+DH+ LP L K F+G+++ T TKA+ +LL D + SK
Sbjct: 59 ITHAHIDHSGYLP-LLVKNGFQGKIYTTPGTKALCSILLPDSGHLQEEEARLANKYGFSK 117
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
L+ E++ +++ E +DF ++ + F + AGH++GAAM + +
Sbjct: 118 HKPALPLYTEKEAQTALNYFETIDFDTPHQLFHDFSFEYHRAGHIVGAAMVKIKTQKGSI 177
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
++TGD R D ++A Q + D ++ESTYG +LH + + VI+ T+ +GG
Sbjct: 178 VFTGDIGRPYDPVMKAPAFIQET-DYLVMESTYGDRLHDATDPLPQ-MAQVINQTVKRGG 235
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
V+IPAFA+GRAQ LL + E NIP++ SP MA+ T++L +
Sbjct: 236 SVIIPAFAVGRAQSLLYFIYELKRQGAIPKNIPVFLDSP-----MAIDATHLLCTYKEDH 290
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ A + + +N+ ++ ++ P +++A+ G Q G ++ D K+
Sbjct: 291 HLTAEQCQGLCRIATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKVFAPDPKS 350
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL 421
+ G+ GT I++ ++V + +G P+ QV +S SAHADY + +LK
Sbjct: 351 TLLFTGFQAGGTRGARIVNGERQVKI-HGSLIPIRAQVVVMSSTSAHADYQELLGWLKHF 409
Query: 422 M--PPNIILVHGESHEMGRLKTKLMTELA 448
P + + HGE H LK K+ +
Sbjct: 410 ARPPKKVFITHGEPHSAQSLKEKIEKQFG 438
>gi|291295570|ref|YP_003506968.1| beta-lactamase domain-containing protein [Meiothermus ruber DSM
1279]
gi|290470529|gb|ADD27948.1| beta-lactamase domain protein [Meiothermus ruber DSM 1279]
Length = 447
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 124/437 (28%), Positives = 208/437 (47%), Gaps = 29/437 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE---IDPSAIDVLLIT 82
ITP GA V SC + ++ +L DCG AY G A +E DP +D +LI+
Sbjct: 3 ITPFGAAQTVTGSCHLVEHQNYRLLLDCG---AYQG-ADEERNEEPFGFDPRTVDAVLIS 58
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-------- 134
H H DH LP + + F GRV++T T+ I ++L D +K+ + E ++
Sbjct: 59 HAHNDHIGRLPMLI-RQGFAGRVYVTEPTRLILPVILEDALKLMQEERERLVRKGREAPP 117
Query: 135 --FDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
++E D+ ++EV+ ++QT + + AGH+ G+A ++ AG ++++GD
Sbjct: 118 LPWNESDLAELYTRLEVVTYYQTQSLGPFSYRLRDAGHLPGSAFIQLEAAGRSLIFSGDL 177
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
L + P D+ + E TYG + H+P + F+ ++ S +SQ G+V IP+
Sbjct: 178 GHRRKDVLVDPDYPAMV-DLVLCEGTYGDRAHRPFAATLEEFSGILRSVLSQNGKVFIPS 236
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
FAL R QE+L + E ++P++ SP+A K +Y + ++ +A
Sbjct: 237 FALERTQEVLFYIREL-EQRGAIPSVPVFVDSPMASKISEIYPKVRDFFSSEVQRLYAQG 295
Query: 313 -NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
+PF+ + + +S+++ + GP VV+A G L G D KNA +I
Sbjct: 296 LDPFRPQRLEYTHSVEESKALNLMQGPMVVIAGNGMLSGGRILHHLRHGLPDSKNAVIIT 355
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNI 426
GY G L + +I+ E M G T + + H + FS HA + +L +
Sbjct: 356 GYQPRGGLGELLIN-GAETVRMFGETVQVRARTHTLGGFSGHAGRDELLDWLDG--EQRV 412
Query: 427 ILVHGESHEMGRLKTKL 443
LVHGE ++ L L
Sbjct: 413 ALVHGEVEKLQALGQAL 429
>gi|319790325|ref|YP_004151958.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
gi|317114827|gb|ADU97317.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
Length = 457
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/436 (28%), Positives = 209/436 (47%), Gaps = 32/436 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL-PYFDEIDPSAIDVLLITHF 84
IT GA V SC + G L DCG+ + L P F DPS +D ++++H
Sbjct: 3 ITFNGAARVVTGSCHLVEAGGVRFLLDCGLFQGSEELEDLNPKFT-FDPSEVDFVILSHG 61
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------- 131
HLDH LPY ++K F G+++ T T I L+L D +V + V+
Sbjct: 62 HLDHCGRLPYLVKKG-FNGKIYATSGTVDIAHLILLDAAQVQEEHVKTANRKRLREGKKP 120
Query: 132 -DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
++L+ D+ + +F++ V +KF + AGH+L + +++ G R+L++G
Sbjct: 121 KELLYTVDDVFDTFSHFTRCEFNRWYSVGPVKFRFHDAGHILCSEFIELEVEGKRLLFSG 180
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
D +R E P D+ +IE+TY + H+ + F + + ST +GG VLI
Sbjct: 181 DVGNRGKPLIRDPEPPP-KADVVLIETTYASRRHKSFEESVREFKEAVLSTFERGGSVLI 239
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI-RNQF 309
P FAL RAQ++L IL + E ++ SPLA ++ + + +++ R
Sbjct: 240 PTFALERAQDILYILKNMYEK-GELPPCRVFLDSPLAISVTKTFRKHPECLEDKVLRELK 298
Query: 310 ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSG--LSRQLFDIWCSDKKNA 363
+ F F ++ ++++ + G ++++A G G L IW D +N+
Sbjct: 299 ERGDIFSFPYLEFTRTVEESKRINDYRGRAIIIAGNGMCTGGRILHHIKHRIW--DPRNS 356
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKELM 422
V GY EGTL + I+ K+V + N + A + V+ I+ FS+HAD Q +L+
Sbjct: 357 IVFVGYQAEGTLGRAIVEGAKKVKVFNEIVA-VKASVYTINGFSSHADGPQLFEWLRRAS 415
Query: 423 PPN--IILVHGESHEM 436
N ++LVHGE M
Sbjct: 416 KENTEVVLVHGEESSM 431
>gi|333910143|ref|YP_004483876.1| beta-lactamase domain-containing protein [Methanotorris igneus Kol
5]
gi|333750732|gb|AEF95811.1| beta-lactamase domain protein [Methanotorris igneus Kol 5]
Length = 426
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 207/420 (49%), Gaps = 30/420 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT GA EVGRSC+ + IL DCG+ G P + +D +D + ++H H
Sbjct: 3 ITFRGAAMEVGRSCIEIDSGESKILLDCGVKLTGEG----PKYPILDNIKVDGVFVSHAH 58
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH +LP L + T TK I K+LL D +K+ V F+ DI + ++
Sbjct: 59 LDHVGALP-ILTHNQINAPIHSTPLTKEITKVLLKDSLKIEMVEHISPKFNMHDIKKCIN 117
Query: 146 KIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
+ + ++ V + + AGH+ G+A ++D ++LYTGD + R ++ A+
Sbjct: 118 -LHIPTYYNKRRVFKDFVYEYFDAGHIPGSASILLDYGNKKILYTGDIKVRDTRLVKGAD 176
Query: 205 LPQFSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
L + DI IIESTYG +H R + EKRF I TI++GG LIP FA+ RAQE+L
Sbjct: 177 LSYANEDIDVLIIESTYGNSIHPDREMTEKRFLQKIKETINRGGVALIPVFAVNRAQEIL 236
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI-LSMNERIRN----QFANSNPFKF 317
LIL E E ++PI+ MA+ T I L +E +R+ + A S +
Sbjct: 237 LILAE------EKFDVPIFVDG------MAIEITEIMLRHSEYLRDAKKLEKAYSRVYVV 284
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSG-LSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
K + ++ +V+ + G L G + L ++W + +N+ ++ GY VE T
Sbjct: 285 KSRDEREKVIEYLKENGGIVVTTAGMLDGGPILHYLSEMW-DNPENSLILTGYQVEDTNG 343
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ +I ++NG ++V FSAHA + F+ ++ P +I+ HG+ E+
Sbjct: 344 RYLIETG--YLIINGQEIKPKLEVTLFDFSAHAGMDELHEFVNKVNPETLIIQHGDELEV 401
>gi|95768245|gb|ABF57340.1| cleavage and polyadenylation specific factor 3 [Bos taurus]
Length = 114
Score = 172 bits (435), Expect = 5e-40, Method: Composition-based stats.
Identities = 73/108 (67%), Positives = 89/108 (82%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV 125
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKV
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 113
>gi|301058011|ref|ZP_07199066.1| metallo-beta-lactamase domain protein [delta proteobacterium
NaphS2]
gi|300447837|gb|EFK11547.1| metallo-beta-lactamase domain protein [delta proteobacterium
NaphS2]
Length = 432
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/420 (28%), Positives = 206/420 (49%), Gaps = 20/420 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG V SC + G IL DCG+ + + + + P+ +D L +TH H
Sbjct: 3 IVHLGGEKTVTGSCHLLQVNGLNILVDCGLAQGRDHLLPMDCW-PVKPADVDFLFLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+DH +P ++K F+G + THATKA+ + +L D S ++ + + I+R
Sbjct: 62 IDHVGRVPELVQKG-FRGEILTTHATKALLEPMLKDAAGFSHLTELESVGLLTVIDRLSW 120
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG-VRVLYTGDYSREEDRHLRAA 203
E + Q+ +++ G++F AGH+LG+ +D++G RV+++GD E L
Sbjct: 121 GFE---YGQSFDLDRGVRFTLGRAGHILGSCWIQLDLSGEGRVVFSGDLGAEHTPLLCDP 177
Query: 204 ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
++P+ D+ ++E+TYG ++H R R+ R V+ ++ GG+VLIPAFALGR QELL
Sbjct: 178 DVPE-GCDVLVMEATYGDRVHGDRKDRKMRLGQVLQKALADGGKVLIPAFALGRTQELLY 236
Query: 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN-PFKFKHISP 322
+D + +F +P++ SPL + VY + ++ R + + P F +
Sbjct: 237 EMDRVFGK-GDF-RVPVFLDSPLGLEITKVYSSLSQYWDQEARGHLSRGDHPIDFDGLYA 294
Query: 323 LNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+ D D+ GP V++A G G +N + GY V GT +
Sbjct: 295 VRRHSDHMDLQRTDGPMVILAGSGMCTGGRIVNHIREGIEKPENDMLFVGYQVPGTPGRD 354
Query: 379 IIS---EPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKELMP-PNIILVHGES 433
I++ +P ++ G + VH ++ +SAHAD ++ ++ P I LVHG+
Sbjct: 355 ILTYCGKPGGYVMLEGERLAIRAGVHLMAGYSAHADRNGLVAWVNAMVGRPRIKLVHGDG 414
>gi|428307781|ref|YP_007144606.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249316|gb|AFZ15096.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 894
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 135/429 (31%), Positives = 209/429 (48%), Gaps = 30/429 (6%)
Query: 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAID 77
++ ++LI+TPLGA +G SC + I+ D G P G LP F+ + +P +
Sbjct: 305 KDKNRLIVTPLGAARSIGASCFRVLIGPYEIVLDAGTRP--KGSNPLPAFEHLKNP---N 359
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGR-VFMTHATKAIYKLLLTDYVKVSKVSVEDM--L 134
++LITH H DH +LP F ++ F + T T+ I ++LTD +KV + S ED L
Sbjct: 360 LILITHAHQDHIGALPVFHQR--FPATPMICTAGTREIAHVMLTDCLKVQQ-SNEDFEQL 416
Query: 135 FDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
FDE D+++++ +++ + E + G+K AGH++GAA + +LYTGDY+
Sbjct: 417 FDEIDLDQTLFQLQTQPVGKDFEPLPGLKVRFIHAGHIVGAACVYIRYGERSLLYTGDYN 476
Query: 194 REEDRH---LRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
R LR A+LPQ DI I ESTYG H R +E + +S GG VLI
Sbjct: 477 TTNSRTTDGLRLADLPQ--ADILITESTYGADTHPSRKAQETELLQAVAEVVSSGGNVLI 534
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPI-YYASPLAKKCMAVYQTYILSMNERIRNQF 309
PAFALGRAQE++L + FH + I Y L + V++ ++ + ++N
Sbjct: 535 PAFALGRAQEIILAI----RTSALFHKLKIPVYIDGLVRAVTDVFRDHLDFLPGSVQNFA 590
Query: 310 ANSNPFKFKH----ISPLNSIDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
PF + I P+ + + PSV++AS G L G S A
Sbjct: 591 LQQEPFFDPNGKPPIIPIGHPRERPLAIAKPSVIIASSGMLSGGASVYYGQALLERDNAA 650
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM 422
I GY E + + + KE + + G + V + SAHAD + + +
Sbjct: 651 IFISGYTDEESPGRFLQGLQKEDEVEIEGKKLIVRATVRRFNLSAHADKVGLTQVIHRVN 710
Query: 423 PPNIILVHG 431
P ++IL+HG
Sbjct: 711 PKHLILIHG 719
>gi|333993297|ref|YP_004525910.1| metallo-beta-lactamase family protein [Treponema azotonutricium
ZAS-9]
gi|333735156|gb|AEF81105.1| metallo-beta-lactamase family protein [Treponema azotonutricium
ZAS-9]
Length = 469
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 134/455 (29%), Positives = 221/455 (48%), Gaps = 49/455 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLITHF 84
LGA EV S + GK+ L DCG A+ G A I ID ++TH
Sbjct: 8 LGAAEEVTGSKHVLEIDGKSYLIDCG---AFQGSRAEADRKNRNFGIAADRIDSAILTHG 64
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----------- 133
H DH P L K +KG ++ T AT+ I L++ D + E +
Sbjct: 65 HFDHCGLFP-LLAKQGYKGNIYATPATRDIASLIMMDSANIQARDAEYLRKQAHKKGEKF 123
Query: 134 ----LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMV----DIAGV 184
L++E+D ++ ++ + +++ + + +GI Y AGH+LG+AM + D V
Sbjct: 124 EWTPLYEEKDAIQATSQMVGVSYNRPMLIGDGIDLEFYDAGHILGSAMAYITVKKDGREV 183
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
R+L +GD R+E +R + P +PD I+ESTYG +LH+ + +R ++ T++
Sbjct: 184 RILASGDLGRKEKPIIRDPDRPP-APDYIILESTYGDRLHENADNAMERLAEIAKRTVAA 242
Query: 245 GGRVLIPAFALGRAQELL----LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
G++LIPAFA+ R QEL+ +++DE PE IPIY SP+A ++Q +
Sbjct: 243 KGKILIPAFAIERTQELVYYFHMLVDE--GIIPE---IPIYVDSPMATNATTIFQIHPEC 297
Query: 301 MNERIRNQFA--NSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFD 354
+E I++ F + NPF F + S+ + D+ GP +++++ G ++G +
Sbjct: 298 YSEEIKDAFIKHHKNPFGFNSLHFTTSVQESKDLNDMKGPLIIISADGMCEAGRIQHHLI 357
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQ 413
D + GY+ + TL + I ++ EV + +G V I +FSAHADY++
Sbjct: 358 HNIGDPNTTVLCVGYMAQNTLGRRIRNKEGEVKI-HGQWFQRRAAVEEINAFSAHADYSE 416
Query: 414 TSTFLKEL---MPPNIILVHGESHEMGRLKTKLMT 445
++LK L I +VHGE K L +
Sbjct: 417 AISWLKSLDCSRLKRIFMVHGEPKAQAAFKQHLAS 451
>gi|336477059|ref|YP_004616200.1| KH-domain/beta-lactamase-domain-containing protein [Methanosalsum
zhilinae DSM 4017]
gi|335930440|gb|AEH60981.1| KH-domain/beta-lactamase-domain protein [Methanosalsum zhilinae DSM
4017]
Length = 636
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 135/453 (29%), Positives = 220/453 (48%), Gaps = 36/453 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDVLLITH 83
IT LG EVGRSC +S ++ DCG++ M Y E P + +D ++ITH
Sbjct: 183 ITSLGGCREVGRSCFVLSTPESRVMVDCGVNVGSDENMTPYLYVPEAYPLNQLDAVVITH 242
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH +P L K ++G ++ T T+ + LL DY+ V+ + ++ DI
Sbjct: 243 AHLDHQGLVP-LLYKYGYEGPIYCTPPTRDLMALLQLDYIDVAARDARKIPYESADIREV 301
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYSREEDRHL 200
+ LD+ + ++ IK + AGH+LG+++ I R ++ TGDY R
Sbjct: 302 LKHTITLDYEEVTDIAPDIKLTFHNAGHILGSSISHFHIGDGRHNIVMTGDYKYGPTRLF 361
Query: 201 RAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIPAFALG 256
A + P+ + I ESTYG QP EK +++ TI + G VLIPAFA+G
Sbjct: 362 DPAVNKFPRV--ETVITESTYGNSNAIQPSLKEAEKNLQNIVKRTIDRNGIVLIPAFAVG 419
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNP 314
R+QE++++L+E +IP+Y + + A++ TY +N +R NP
Sbjct: 420 RSQEVMIVLEEAIRKGI-ISDIPVYLDG-MIWEATAIHATYPEYLNNDLRKLIFQKGQNP 477
Query: 315 FKFKHISPLNS----IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F ++ ++S + D P V++A+ G + +G F + D++N V GY
Sbjct: 478 FLSENFRSVDSNELRRNIIDDPHPCVILATAGMMNAGPILDYFKAFAPDERNTLVFVGYQ 537
Query: 371 VEGTLAKTIISEPKEVTL--MNGL-TAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPP 424
+GT+ + I KEV L NG +NM+V + FS H+D Q ++K++ P
Sbjct: 538 ADGTMGRRIQKGWKEVPLPAKNGSDMVKMNMEVEIVDGFSGHSDRKQLMDYVKKMKPRPE 597
Query: 425 NIILVHGES----------HEMGRLKTKLMTEL 447
I +HGE ++ RL+T+ +T L
Sbjct: 598 RIFTMHGEESSCIDLASSMYKKYRLETRALTNL 630
>gi|294495430|ref|YP_003541923.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666429|gb|ADE36278.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
Length = 637
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 129/459 (28%), Positives = 223/459 (48%), Gaps = 38/459 (8%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S I+ DCG++ M Y E+ P + ID
Sbjct: 178 DQWVRLTSLGGCREVGRSCFLLSTPESKIMIDCGVNVGSDDDMTPYLYIPEVQPLNQIDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
++ITH HLDH +P L K + G ++ TH T+ + LL D++ V+ + + ++
Sbjct: 238 VVITHAHLDHQGLVP-LLYKYGYDGPIYCTHPTRDLMVLLELDFIDVAAKDGKRIPYESA 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
D+ ++ VL++ + ++ IK + AGH++G+A+ F + V+ TGD+
Sbjct: 297 DVRNALKHSIVLEYEEVTDIAPDIKLTFHNAGHIIGSAVSHFHIGDGLHNVVITGDFKYG 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIP 251
R A + P+ + I ESTYG ++ EK +I TI + G VLIP
Sbjct: 357 PTRLFNPAVNKFPRV--ETVITESTYGASNSMQPALKDAEKNLQRIIKETIDRQGVVLIP 414
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
AFA+GR+QE++++++E +P+Y + + A++ TY +N +R
Sbjct: 415 AFAVGRSQEVMIVIEEAIRKGI-IDEVPVYLDG-MIWEATAIHATYPEYLNNDLRRLIFQ 472
Query: 310 ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF + P++S + ++ P V++++ G + G + F + +++N V
Sbjct: 473 KGQNPFLSECFKPVDSNELRRNIIENPHPCVILSTSGMMSGGPVMEYFKAFAPNERNTLV 532
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKE 420
GY +GTL + I KE+ L +G T +NM V + FS H+D Q F K
Sbjct: 533 FVGYQADGTLGRRIQKGWKEIPLSSGGKGSETVLMNMDVEIVDGFSGHSDRKQLMEFFKR 592
Query: 421 L--MPPNIILVHGES----------HEMGRLKTKLMTEL 447
+ P + HG+ H+ +++T+ +T L
Sbjct: 593 MKPQPERVFTEHGDERSCIDLASSIHKRKKIETRALTNL 631
>gi|410693709|ref|YP_003624330.1| putative mRNA Cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
gi|294340133|emb|CAZ88504.1| putative mRNA Cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
Length = 460
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 138/469 (29%), Positives = 217/469 (46%), Gaps = 48/469 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-------IDPSAIDVLLIT 82
GA V SC + +GK +L DCG+ + G L DE DP +ID+LL+T
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHEL---DEENAEDFGFDPKSIDLLLLT 60
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-------- 134
H HLDH +P L K F+G + T AT+ + +++L D + + E
Sbjct: 61 HAHLDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAERNTRHAHRRGD 119
Query: 135 FDEQDINRSMDKIEVLDFH-------QTVEVN-GIKFWCYTAGHVLGAAMFMVDI----A 182
Q + ++D + L+F QT+E+ G+ + AGH+LG+A ++ A
Sbjct: 120 AQAQPLYTTLDALNALEFFGRTAVYGQTLELAPGLSATFFDAGHILGSASIRIEQTASGA 179
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242
V+++GD LR +LP + D ++E+TYG +LH+P I T+
Sbjct: 180 HRSVIFSGDLGNGGHAVLRDPQLPPRA-DSVVMETTYGDRLHKPIEPSIAELFAAISETL 238
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
+GG V+IP FAL RAQE+L L E +P++ SP+A +++ +
Sbjct: 239 KRGGNVVIPTFALERAQEILFYLREGLEAGKLPRTLPVFLDSPMAISATEIFRHHPECYG 298
Query: 303 ERIRNQF-ANSNPFKFKHI----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
I F A S+PF + +SI VG +V+MA G G R
Sbjct: 299 NAIDALFRAGSDPFSLPGLRFTREAADSIALNRLVGGAVIMAGSGMATGGRVRHHLRHNL 358
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTST 416
+++ V GY GTLA+ +I K+V L G P++ +++ I+ FSAHAD +
Sbjct: 359 GRHESSVVFVGYAARGTLARLLIDGAKKVKLF-GEEIPVHARLYTINGFSAHADQRELLA 417
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ + L P ILVHG+ M L NT++ PK +++
Sbjct: 418 WQQALKPEQTILVHGDPDSMDVFAALLK------NTRVQRPKQGDVIDL 460
>gi|296134936|ref|YP_003642178.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
gi|295795058|gb|ADG29848.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12]
Length = 460
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 138/469 (29%), Positives = 217/469 (46%), Gaps = 48/469 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-------IDPSAIDVLLIT 82
GA V SC + +GK +L DCG+ + G L DE DP +ID+LL+T
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHEL---DEENAEDFGFDPKSIDLLLLT 60
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-------- 134
H HLDH +P L K F+G + T AT+ + +++L D + + E
Sbjct: 61 HAHLDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAERNTRHAHRRGD 119
Query: 135 FDEQDINRSMDKIEVLDFH-------QTVEVN-GIKFWCYTAGHVLGAAMFMVDI----A 182
Q + ++D + L+F QT+E+ G+ + AGH+LG+A ++ A
Sbjct: 120 AQAQPLYTTLDALNALEFFGRTAVYGQTLELAPGLSATFFDAGHILGSASIRIEQTASGA 179
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242
V+++GD LR +LP + D ++E+TYG +LH+P I T+
Sbjct: 180 HRSVIFSGDLGNGGHAVLRDPQLPPRA-DSVVMETTYGDRLHKPIEPSIAELFAAISETL 238
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
+GG V+IP FAL RAQE+L L E + ++ SP+A +++ +
Sbjct: 239 KRGGNVVIPTFALERAQEILFYLREGIEAGKLPRTLAVFLDSPMAISATEIFRHHPECYG 298
Query: 303 ERIRNQF-ANSNPFKFKHI----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
I F A S+PF + +SI VG +V+MA G G R
Sbjct: 299 NAIDALFRAGSDPFSLPGLRFTREAADSIALNRLVGGAVIMAGSGMATGGRVRHHLRHNL 358
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTST 416
+++ V GY GTLA+ +I K+V L G P++ +++ I+ FSAHAD +
Sbjct: 359 GRHESSVVFVGYAARGTLARLLIDGAKKVKLF-GEEIPVHARLYTINGFSAHADQRELLA 417
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ + L P ILVHG+ H M L NT++ PK +++
Sbjct: 418 WQQALKPEQTILVHGDPHSMDAFAALLK------NTRVQRPKQGDVIDL 460
>gi|300697519|ref|YP_003748180.1| exonuclease/RNA metabolizing enzyme, metallo-beta-lactamase family
[Ralstonia solanacearum CFBP2957]
gi|299074243|emb|CBJ53788.1| exonuclease/RNA metabolizing enzyme, metallo-beta-lactamase family
[Ralstonia solanacearum CFBP2957]
Length = 452
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 127/444 (28%), Positives = 218/444 (49%), Gaps = 38/444 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE--IDPSAIDVLLITHFHL 86
LGA + V S + G+ ++ DCG+ + + L +D+ ++P ID +L+TH H+
Sbjct: 6 LGATDTVTGSKYVLEAGGRQVMVDCGLFQGFKSLR-LRNWDKLPVNPHHIDAVLLTHAHI 64
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------------- 133
DH+ LP L + F+G V+ T T + ++L D ++++VED
Sbjct: 65 DHSGYLP-LLVRNGFRGPVYCTRGTAELCGIMLPD---SARLAVEDATYANAQGFSRHHP 120
Query: 134 ---LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+DE D +++ ++ + + + V GI+ + AGH++GAA + G RV+++
Sbjct: 121 ALPLYDENDAAKALRRLHPIAYGERFPVAEGIEAEFHRAGHIIGAASVTLYAQGQRVVFS 180
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD R+ D +RA E P D ++ESTYG +LH P + + V+ TI QGG +L
Sbjct: 181 GDLGRQTDPVMRAPE-PVAEADHLLVESTYGDRLHPPGDPLDL-LERVVRQTIDQGGTLL 238
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN---ERIR 306
IPAFA+GR Q LL L H ++PIY SP+A++ V+ ++ ++ +
Sbjct: 239 IPAFAVGRTQALLYCLYALIRQH-RIPHVPIYLDSPMAERATEVFARHVDDLHIDAADCQ 297
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
A + P + SP S+ SD P +++A+ G G + K+NA ++
Sbjct: 298 AACALAVPVQ----SPQQSMHLASDRTPKIILAASGMATGGRVLHHLKAYGGGKRNAILM 353
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL--MP 423
G+ GT +++ ++V + +G + V I SAHAD + +L+ P
Sbjct: 354 SGFQAAGTRGAALLAGQRQVRV-HGHDVAIRATVEQIQHLSAHADADELMAWLRGFTRAP 412
Query: 424 PNIILVHGESHEMGRLKTKLMTEL 447
+VHGE L+ ++ EL
Sbjct: 413 RQTFIVHGEPAASDALRQRIEREL 436
>gi|17544920|ref|NP_518322.1| hypothetical protein RSc0201 [Ralstonia solanacearum GMI1000]
gi|17427210|emb|CAD13729.1| putative beta-lactamase-like;rna-metabolising
metallo-beta-lactamase; protein [Ralstonia solanacearum
GMI1000]
Length = 452
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 218/444 (49%), Gaps = 38/444 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LGA V S + + ++ DCG+ Y + L +D ++P ID +++TH H+
Sbjct: 6 LGATETVTGSKYVLETGARRVMVDCGLFQGYKSLR-LRNWDTLAVNPHHIDAVVLTHAHI 64
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------------- 133
DH+ LP L + F+G V+ T T + +LL D ++++VED
Sbjct: 65 DHSGYLP-LLVRNGFRGPVYCTKGTAELCNILLPDS---ARLAVEDAQYANAQGFSRHHP 120
Query: 134 ---LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+DEQD +++ ++ + + + V +G++ + AGH++GAA + G R +++
Sbjct: 121 ALPLYDEQDAAKALRRLHPVGYGERFSVVDGVEAEFHRAGHIIGAATVTLLAEGRRTVFS 180
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD R+ D +R E P D ++ESTYG +LH P + ++ ++H TI QGG +L
Sbjct: 181 GDLGRQVDPVMRPPE-PVAEADTLLVESTYGDRLHPPGDPLDE-LERIVHRTIEQGGTLL 238
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN---ERIR 306
IPAFA+GR Q LL L H ++PIY SP+A++ V+ ++ ++ +
Sbjct: 239 IPAFAVGRTQALLFCLYTLIRTH-RIPHVPIYLDSPMAERATEVFARHVEELHIDAADCQ 297
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
A + P + SP S+ +D P +++A+ G G + K+NA ++
Sbjct: 298 AACALAVPVQ----SPQQSMHLGNDRAPKIILAASGMATGGRVLHHLKSFGGGKRNAILM 353
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL--MP 423
G+ GT +++ +++ + +G + V I+ SAHAD + +L+ P
Sbjct: 354 SGFQAAGTRGAALLAGQRQLRV-HGREIAIRATVEQIANLSAHADANELMAWLRGFSRAP 412
Query: 424 PNIILVHGESHEMGRLKTKLMTEL 447
+VHGE L+ ++ EL
Sbjct: 413 EQTFIVHGEPAASDALRQRIEREL 436
>gi|161529235|ref|YP_001583061.1| beta-lactamase domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160340536|gb|ABX13623.1| beta-lactamase domain protein [Nitrosopumilus maritimus SCM1]
Length = 646
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 213/425 (50%), Gaps = 24/425 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSA--IDVLLITHFH 85
LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D ++I H H
Sbjct: 194 LGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNLTLDDLDAVVIGHAH 253
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 254 LDHTGFLPT-LCKYGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYSERDVKQIMR 312
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 313 QTITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 372
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG++ + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 373 ASWNFPRVETLLIESTYGLKEDIQPSRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 432
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A++++Y + ++ + + NPF +
Sbjct: 433 IMMVIDHYMKSG-EMIEAPVFTEG-MISEASAIHESYPEYLARELKQKILETDDNPFDSE 490
Query: 319 HISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D + P +++A+ G L+ G + F DKK+ + Y V GT
Sbjct: 491 YFTNIEHADAREEPMREDSPCIILATSGMLEGGPVLEYFKNIAPDKKSKVLFVSYQVNGT 550
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
L + ++ K+ T++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 551 LGRRVLDGSKQATMLGKDGKVEVVTINCGVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 610
Query: 428 LVHGE 432
+ HGE
Sbjct: 611 VNHGE 615
>gi|407463310|ref|YP_006774627.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046932|gb|AFS81685.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 646
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 119/425 (28%), Positives = 213/425 (50%), Gaps = 24/425 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSA--IDVLLITHFH 85
LG +VGRS + +S IL DCGI+P A S M A P D ++ + +D ++I H H
Sbjct: 194 LGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLDDLDAVVIGHAH 253
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 254 LDHTGFLPT-LCKYGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQGRTPIYSERDVKQIMR 312
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ L + +++ IK AGH+LG+A+ F + +Y+GD + A
Sbjct: 313 QTITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGDIKFGKSILFEA 372
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG++ + R E F + +++T++ GG+VLIP A+GRAQE
Sbjct: 373 ASWNFPRVETLLIESTYGLKEDIQPSRQEVESAFINAVNNTLADGGKVLIPIPAVGRAQE 432
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
+++++D Y + E P++ + + A++++Y + ++ + + NPF +
Sbjct: 433 IMMVIDHYMKSG-EMIEAPVFTEG-MISEASAIHESYPEYLARELKQKILETDDNPFDSE 490
Query: 319 HISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D + P +++A+ G L+ G + F DKK+ + Y V GT
Sbjct: 491 YFTNIEHADAREEPMRENSPCIILATSGMLEGGPVLEYFKNIAPDKKSKVLFVSYQVNGT 550
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
L + ++ K+ T++ +N V + FS H+DY Q +F++ L P ++
Sbjct: 551 LGRRVLDGSKQATMLGKEGKVEVVTINCGVEKLDGFSGHSDYNQLMSFVQRLRPKLRRVL 610
Query: 428 LVHGE 432
+ HGE
Sbjct: 611 VNHGE 615
>gi|150403348|ref|YP_001330642.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150034378|gb|ABR66491.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 433
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/433 (27%), Positives = 212/433 (48%), Gaps = 22/433 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ + S + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVEVKTEKSTVLFDCGVKLS-SEESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPVLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLNLFRK 121
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++ +F + AGH+ G++ ++ +G RV+YTGD + ++ A+L
Sbjct: 122 ARYNHPKNFKDFEFEFFNAGHIPGSSTISLNYSGKRVVYTGDTKVSDTDLVKGADLSYTK 181
Query: 210 P--DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
D I+ESTYG + R EK F + I T+ +GG L+P FA+ R+QE+L+IL++
Sbjct: 182 EHIDCLIVESTYGDSNQENREEAEKNFINKIKETLDRGGIPLVPVFAVDRSQEILMILNK 241
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN--ERIRNQFANSNPFKFKHISPLNS 325
+ +F +P+Y+ L +K + Y +N + ++ F N + K +
Sbjct: 242 H-----DF-GVPVYFDG-LGRKITRIMLQYPAFLNHPDDLKAAFLNVTEVESKDRPKI-- 292
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I + G +++++ G L+ G + + KN+ + GY VE T + ++ K
Sbjct: 293 IKEIRQNG-GIIVSTAGMLEGGPIIPYITEFMKEPKNSLIFTGYQVEETAGRHLLETGK- 350
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ ++ FSAH + + +K+ P +++ HGE + K ++
Sbjct: 351 -LEIGEFDVEPKFEIASYQFSAHGEMDELRHIVKKANPETLVIQHGEEEVVNVFKDWAVS 409
Query: 446 ELADCNTKIITPK 458
E + N K+ PK
Sbjct: 410 EGFNEN-KVFAPK 421
>gi|357419642|ref|YP_004932634.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
gi|355397108|gb|AER66537.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
Length = 537
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 214/450 (47%), Gaps = 43/450 (9%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
LGA EV S + G+ +L DCG++ A SG +P + DPS ID +L+TH HLD
Sbjct: 6 LGAAQEVTGSNYLLEVDGRRVLVDCGLYQGANSGDNHVPL--DYDPSTIDAVLLTHAHLD 63
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE--------------DM 133
H +P L K +KG V+ T T + +L D + K E +
Sbjct: 64 HTGKVP-LLVKQGYKGPVYGTRPTLELCDILWRDAAHIQKEDAEWQSRKNMRKGLPPVEP 122
Query: 134 LFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDI----AGVRVLY 188
L+ +D+ RS++++ + + VE V+G+K AGH+LG+A+ V + V+V++
Sbjct: 123 LYTLEDVERSLERLRSVGYDDVVEIVDGLKVRFRDAGHILGSAILEVWLNEGDEEVKVVF 182
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
+GD +E + A D +IESTYG + H+ + F + + G+V
Sbjct: 183 SGDLGPQETV-MEANPAVVEDADFVVIESTYGNRNHKTNLESREEFRQTMKEMLKDHGKV 241
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIP F + RAQ +L L N+PIY+ SP+ K AVY +I ++ I+ +
Sbjct: 242 LIPTFVVDRAQRVLYELKLMQQEGILPDNVPIYFDSPMGMKTTAVYSEHISLLSAEIQEE 301
Query: 309 FANS-NPFKFKHISPLNSIDD---FSDVGPSVVMASPGGLQSG-----LSRQLFDIWCSD 359
+PF K + + S+D+ +++ ++V+A G G L LF
Sbjct: 302 ARQGRDPFTPKQLHIVESVDESKAINNIKHAIVLAGSGMCNGGRIVHHLKNNLF------ 355
Query: 360 KKNACVI-PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTF 417
++NA V+ GY +GTL + +I K V + G + ++H I+ FSAHAD + +
Sbjct: 356 RENAHVVFVGYQAKGTLGRRLIDGSK-VVRVAGEEVSVKAKLHTINGFSAHADRSDLLAW 414
Query: 418 LKELMP-PNIILVHGESHEMGRLKTKLMTE 446
K P I+ HGE G L L E
Sbjct: 415 AKNFKTNPLFIVTHGEPEASGALAASLQEE 444
>gi|325108776|ref|YP_004269844.1| RNA-metabolising metallo-beta-lactamase [Planctomyces brasiliensis
DSM 5305]
gi|324969044|gb|ADY59822.1| RNA-metabolising metallo-beta-lactamase [Planctomyces brasiliensis
DSM 5305]
Length = 464
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 130/473 (27%), Positives = 234/473 (49%), Gaps = 44/473 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLI 81
+T GA EV S + + + IL DCG+ + G A DP +D L +
Sbjct: 3 LTFYGAAGEVTGSQHLLEVEERRILLDCGL---FQGRRAETRSKNEKFAYDPGTVDSLAL 59
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE---------- 131
+H H+DH +LP ++K F+G ++ T AT + ++L D K+ +
Sbjct: 60 SHAHIDHCGNLPRLVKKG-FRGPIYCTPATADVAAVMLADAAKIQREDARYLQRHLKKGH 118
Query: 132 ---DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA--GV- 184
+ L+D+ D+ R++D+ E L E++ ++ AGH+LG+A+ +D+ GV
Sbjct: 119 PPIEPLYDQDDVERTIDQFEPLAIGPIHEIDSNLRIRFLEAGHILGSAICQLDVQDEGVW 178
Query: 185 -RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
RV+Y+GD R + L+ + + + D+ I ESTYG ++H P + ++ ++H ++
Sbjct: 179 KRVVYSGDLGRRDAPLLKDPQTLERT-DVLICESTYGNRVHPPTSDIKQELKRIVHEAVT 237
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
GGR+++PAF+LGR Q+L L++ + N E IP++ SPL+ + VY+ ++ +M+E
Sbjct: 238 LGGRIIVPAFSLGRTQQLTYFLNDLF-NAGELPRIPVFVDSPLSLRLTRVYRDHLDAMDE 296
Query: 304 RIRNQFA-NSNPFKFKHISPLNSIDDF----SDVGPSVVMASPGGLQSGLSRQLFDIWCS 358
++N +++PF F ++ ++S + S G +V+++ G +SG S
Sbjct: 297 SVQNVLRHDADPFGFPWLTYVSSAAESRTLNSHEGAMMVISASGMCESGRIVHHLVHAIS 356
Query: 359 DKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
D++N + G+ TL + I V + + PL +V + SAHAD +
Sbjct: 357 DERNTIALMGFQAAHTLGRKIAECRPHVRIFD-RDFPLRAKVEKLDGLSAHADAHDFKWW 415
Query: 418 LKELMPPNII----LVHGESHEMGRLKTKLMTELAD-CNTKIITPKNCQSVEM 465
++ I LVHGE + L T L D C+ I P+ Q+ ++
Sbjct: 416 FEQAAAQGGIGQAFLVHGEPES----ASALATVLDDYCDEPPIIPERGQTFQL 464
>gi|399887931|ref|ZP_10773808.1| metallo-beta-lactamase family protein [Clostridium arbusti SL206]
Length = 511
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 129/435 (29%), Positives = 219/435 (50%), Gaps = 40/435 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA V SC + KTIL DCG++ DP +D ++++H H+DH+
Sbjct: 7 GAAGCVTGSCHILRVNNKTILLDCGLYQGKDEKERGNDGFNFDPKEVDYVILSHAHIDHS 66
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YVKVSKVSVEDMLFDEQDIN------ 141
+P L K FKG+VF T+ATK + +L D Y++ ++V ++ Q ++
Sbjct: 67 GRIP-LLYKKGFKGQVFCTNATKDLCSAMLVDSGYIQENEVLWKNKRRKRQGLDIIEPLY 125
Query: 142 ------RSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG-----VRVLYT 189
SM + + T+EV +G K +GH+LGAA + I V+++YT
Sbjct: 126 TSTMAELSMYLFTGIPYGTTIEVFDGFKIRFRDSGHLLGAAFVELFIREGEKDEVKIVYT 185
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD + ++ + ++ D I+E+TYG +LH + + + TD+I T ++GG V+
Sbjct: 186 GDVGNVDIPIMKDPAVLDYA-DYLIMETTYGNRLHDNLHNQLHKLTDIIKETFAKGGNVI 244
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP+FA+GR QE+L L + N+ E N+ ++ SPLA K V++ Y ++ + +F
Sbjct: 245 IPSFAVGRVQEVLYELGKLKRNN-EISNLMVFVDSPLAAKSTRVFEKYNDCFDDETKKEF 303
Query: 310 AN-SNPFKFKHISPLNSIDDFSDVGP----SVVMASPGGLQSGLSRQLF--DIWCSDKKN 362
AN +NP +F+ + NS +D + + +V++++ G ++G + ++W +
Sbjct: 304 ANGNNPLRFEGLIFTNSPEDSAKINKIQSGAVIISASGMCEAGRIKHHLKHNLW----RK 359
Query: 363 ACVIP--GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLK 419
C I GY +GTL I+S K+V + G +N ++ I S HAD +L+
Sbjct: 360 ECSIAFIGYQAQGTLGNNILSGAKKVKIF-GEDIAVNSSIYDIEELSGHADRDGLIKWLE 418
Query: 420 EL--MPPNIILVHGE 432
P I LVHGE
Sbjct: 419 SFSKKPEEIFLVHGE 433
>gi|325284382|ref|YP_004256922.1| beta-lactamase domain protein [Deinococcus proteolyticus MRP]
gi|324316446|gb|ADY27559.1| beta-lactamase domain protein [Deinococcus proteolyticus MRP]
Length = 526
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/436 (28%), Positives = 209/436 (47%), Gaps = 26/436 (5%)
Query: 27 TPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
T LG +EVG S + +L D G+ P G AALP D ++ + +++TH HL
Sbjct: 6 TGLGGTDEVGASSYLYHFTEGRLLIDAGLRPGMIGDAALPQLDVLNDAPPGAVILTHAHL 65
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH ++LP L + K ++ T AT + L L D +++ + + ML+ +D+ R+ +
Sbjct: 66 DHVSALPVVLRRYP-KLHIYCTPATAHLAALTLADSLRIMEAQGQ-MLYSPEDMKRTFEA 123
Query: 147 IEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELP 206
+++ Q + +G F Y +GH+LGAA +++ + V +TGD S + AA +P
Sbjct: 124 FRPVEYFQRIADHGFAFTLYPSGHLLGAASVLIESSAGTVFHTGDVSNVSTPVVDAAWMP 183
Query: 207 ---QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263
+ D + E+TYG L R I+ + F + + GGRVLIP+FALGRAQE++
Sbjct: 184 PRKTHAVDAVVSEATYGDTLLPARKIQVQAFMHGVAQVVEGGGRVLIPSFALGRAQEIVQ 243
Query: 264 ILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF--KH 319
+L + PE +P+Y + + YQ + + + +RN+ S F
Sbjct: 244 LLHGGMVSGIIPE---VPLYLDG-MVRTVTEAYQDMLPLLPQALRNRVKTSQQPAFFTGT 299
Query: 320 ISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
+ + S D + P+VV+AS G L +G S W D NA + GY +
Sbjct: 300 VEAVQSAKDRERIQRSDKPAVVIASSGMLHAGASPSYARAWLPDSGNALFVVGYQDGESP 359
Query: 376 AKTI--ISEPKEVTL--MNGLTA-PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
+ + + + EV L NG +A ++ SAH+D + + P ++L H
Sbjct: 360 GRRLLELQQGGEVLLPDQNGFSAVSAYARIERFYLSAHSDQGGLLSMIARYDPKKVLLTH 419
Query: 431 GESHE----MGRLKTK 442
GE+ G LKT+
Sbjct: 420 GEAAPRRALAGFLKTR 435
>gi|16082538|ref|NP_394086.1| metal-dependent RNase [Thermoplasma acidophilum DSM 1728]
Length = 639
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 134/443 (30%), Positives = 216/443 (48%), Gaps = 35/443 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCG---IHPAYSGMAALPYF--DEIDP-SAIDVL 79
+T LG +EVGRS +S K +L DCG + P A PY E+ P S ID +
Sbjct: 182 LTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLSTIDAV 241
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
++TH HLDH+ LP L K + G V+MT T+ + LL DY+KV+++ + ++ +
Sbjct: 242 ILTHAHLDHSGLLP-LLFKYGYDGPVYMTPPTRDLAALLQNDYIKVARMEGGKVPYESKY 300
Query: 140 INRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSREE 196
I + L + +T ++ ++ Y AGH+LG+A + I V+ +GD E+
Sbjct: 301 IREELKHTITLRYGETTDITRDMRLTFYNAGHILGSASGHLHIGDGLYNVVLSGDVKFEK 360
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
A + + ESTYG + R + DVI+ T +GG VLIP FA
Sbjct: 361 TWLFNPANNKFPRAETFMTESTYGGRDDYSFTREEATQTLIDVINRTHDRGGSVLIPVFA 420
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIY--YASPLAKKCMAVYQTYILSMNERIRNQF--A 310
+GR+QE++++L++ N IP Y + + A++ Y +N+ +R
Sbjct: 421 VGRSQEVMIVLEDAMRNG----RIPQMDVYLDGMIMEAPAIHAAYPEYLNKELREAIMVK 476
Query: 311 NSNPFK---FKHISPLNSIDDFSDVGP--SVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF FK + + ++ ++ P ++V+A+ G + G + F W +D K+ V
Sbjct: 477 KENPFLSPIFKKVETRDQREEIAE-NPETTIVLATSGMMNGGPVMEYFKAWSADPKHTLV 535
Query: 366 IPGYVVEGTLAKTIISEPKEVTLM---NGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL 421
GY +GTL K I S +E+TL +T P+ M V FS H+ Q ++ +
Sbjct: 536 FVGYQADGTLGKKIQSGAQEITLSGEGKNVTYPVKMDVETAEGFSGHSTKKQLLAYIATM 595
Query: 422 MP-PNIILV----HGESHEMGRL 439
P P ILV +G++ E RL
Sbjct: 596 QPKPKKILVNHGDNGKTAEFARL 618
>gi|187734750|ref|YP_001876862.1| beta-lactamase [Akkermansia muciniphila ATCC BAA-835]
gi|187424802|gb|ACD04081.1| beta-lactamase domain protein [Akkermansia muciniphila ATCC
BAA-835]
Length = 468
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 125/456 (27%), Positives = 218/456 (47%), Gaps = 43/456 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIH-----PAYSGMAALPYFDEIDPSAIDVLLITHF 84
GA S + G IL DCG++ A+ PYF P+ +D ++++H
Sbjct: 7 GAAGTTTGSQHLLEVNGCRILLDCGMYQGRREEAWHINKDFPYFS---PAGVDAVVLSHA 63
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK--------------VSV 130
H+DH+ ++P + K F+G ++ T AT+ + +L+L D ++ + +
Sbjct: 64 HIDHSGNIPNLV-KQGFQGNIYSTFATRDLCQLMLADAARIQEHDCAFINKMNKRRGIHQ 122
Query: 131 EDML--FDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGV--- 184
D+ + EQD R M + + + + + V G+ Y AGH+LGAA +DI
Sbjct: 123 PDVYPTYSEQDAERCMRQFVNIGYDRPIPVVPGVTLTFYDAGHILGAAQVCLDIEDREDG 182
Query: 185 ---RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHST 241
R L++GD R ++ LR +P DI ++ESTYG + H+ + ++ F I
Sbjct: 183 RKKRFLFSGDVGRGDNELLRDP-VPVPDVDILLMESTYGGRFHEAPSRDDETFCRAIKEA 241
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+ GGRV IPAFA+ R Q+LL +L+ + + +P+Y SP+A +++ +
Sbjct: 242 LELGGRVYIPAFAVERTQQLLYLLNRAY-HEGTLPLLPVYVDSPMAVGATEIFRIHPECF 300
Query: 302 NERIRN-QFANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIW 356
N+ + + F +PF F+ + + S+ + + G ++++++ G ++G
Sbjct: 301 NKEVYDFLFREKDPFCFEQLRLIRSVGESQALNKMNGQAIIISASGMCEAGRILHHLANN 360
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTS 415
D KN + GY E TL + I+ KEV ++ G P+ ++ + SFS HAD+ +
Sbjct: 361 IGDPKNTVLFVGYCAEHTLGRKIMDGWKEVPIL-GKQYPVRARIREMDSFSGHADHGELL 419
Query: 416 TFLKELMPP--NIILVHGESHEMGRLKTKLMTELAD 449
+ P NIILVHGE L L A+
Sbjct: 420 EYFDRTGGPKRNIILVHGEEKATQALAGALRERQAN 455
>gi|410692494|ref|YP_003623115.1| putative mRNA cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
gi|294338918|emb|CAZ87258.1| putative mRNA cleavage and polyadenylation specificity factor
[Thiomonas sp. 3As]
Length = 460
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 216/469 (46%), Gaps = 48/469 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-------IDPSAIDVLLIT 82
GA V SC + +GK +L DCG+ + G L DE DP +ID+LL+T
Sbjct: 7 GADRNVTGSCHLLHAQGKRVLIDCGM---FQGSHEL---DEENAEDFGFDPKSIDLLLLT 60
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-------- 134
H HLDH +P L K F+G + T AT+ + +++L D + + E
Sbjct: 61 HAHLDHCGRIP-LLVKRGFRGEIITTAATRELTRVVLLDAAHLQEEEAERNTRHAHRRGD 119
Query: 135 FDEQDINRSMDKIEVLDFH-------QTVEVN-GIKFWCYTAGHVLGAAMFMVDI----A 182
Q + ++D + L+F QT+E+ G+ + AGH+LG+A ++ A
Sbjct: 120 AQAQPLYTTLDALNALEFFGRTAVYGQTLELAPGLSATFFDAGHILGSASIRIEQTASGA 179
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI 242
V+++GD LR +LP + D ++E+TYG +LH+P I T+
Sbjct: 180 HRSVIFSGDLGNGGHAVLRDPQLPPRA-DSVVMETTYGDRLHKPIEPSIAELFAAISETL 238
Query: 243 SQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN 302
+GG V+IP FAL RAQE+L L E +P++ SP+A +++ +
Sbjct: 239 KRGGNVVIPTFALERAQEILFYLREGLEAGKLPRTLPVFLDSPMAISATEIFRHHPECYG 298
Query: 303 ERIRNQF-ANSNPFKFKHI----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
I F A S+PF + +SI VG +V+MA G G R
Sbjct: 299 NAIDALFRAGSDPFSLPGLRFTREAADSIALNRLVGGAVIMAGSGMATGGRVRHHLRHNL 358
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTST 416
+++ V GY GTLA+ +I +V L G P++ +++ I+ FSAHAD +
Sbjct: 359 GRHESSVVFVGYAARGTLARLLIDGATKVKLF-GEEIPVHARLYTINGFSAHADQRELLA 417
Query: 417 FLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+ + L P ILVHG+ M L NT++ PK +++
Sbjct: 418 WQQALKPEQTILVHGDPDSMDAFAALLK------NTRVQRPKQGDVIDL 460
>gi|330508618|ref|YP_004385046.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
gi|328929426|gb|AEB69228.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
Length = 635
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/440 (30%), Positives = 218/440 (49%), Gaps = 40/440 (9%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP-SAID 77
DQ + IT LG EVGRSC+ +S I+ DCGI+ S +A PY E+ P + ID
Sbjct: 178 DQWVRITTLGGCREVGRSCMLLSTPESRIIIDCGINVG-SDDSATPYLYVPEVYPLNQID 236
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDHA +P L K ++G ++ T T+ ++ LL DY++++ + +D
Sbjct: 237 AVVLTHAHLDHAGLVP-MLYKYGYEGPIYCTPPTRDLFVLLQLDYIEIAGREGNRLPYDS 295
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSR 194
I ++ L++ ++ K + AGH+LG+++ F + V +TGDY
Sbjct: 296 GMIREALKHTITLNYGDVTDIAPDTKLTMHNAGHILGSSIAHFHIGDGLYNVAFTGDYKF 355
Query: 195 EEDRHLRAAELPQFSPDIC--------IIESTYG--VQLHQPRNIREKRFTDVIHSTISQ 244
E R F P +C + E+TYG + R E V+ TI++
Sbjct: 356 ERTR--------LFDPAVCNFPRLETLVTEATYGGTNSIQPSRKEAEVNLIKVVKETINR 407
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG+V+IPAF++GR+QE++++L+E +P+ + + A++ TY +N
Sbjct: 408 GGKVVIPAFSVGRSQEVMVVLEEAIRKK-VIDEVPVCLDG-MIYEATAIHTTYPEYLNND 465
Query: 305 IRNQFANS--NPFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD 359
+R+ + NPF F + + + P V++A+ G L G + D
Sbjct: 466 LRDLIFHKGINPFLAECFVQVESPKQRTEIVEGPPCVILATSGMLNGGPVIEYLKRLGPD 525
Query: 360 KKNACVIPGYVVEGTLAKTIISEPKEVTL-MNG--LTAPLNMQVHYI-SFSAHADYAQTS 415
+KN VI GY EGTL + I KEV L ++G T +N++V + FS H+D Q
Sbjct: 526 EKNTLVIVGYQAEGTLGRRIQKGWKEVPLSVDGKTQTVKINLEVTTVDGFSGHSDRQQLM 585
Query: 416 TFLKELMP-PNIILV-HGES 433
+L+ + P P +L HGE
Sbjct: 586 EYLRRIYPKPGRVLTNHGEE 605
>gi|448302487|ref|ZP_21492466.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
gi|445581153|gb|ELY35515.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
Length = 637
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/464 (27%), Positives = 224/464 (48%), Gaps = 29/464 (6%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-IDV 78
E D + +T LG EVGR+ +S IL DCG P G E +P A +D
Sbjct: 178 ETDWVRVTTLGCCREVGRASFVLSTPETRILVDCGDKPGAEGDVPHLQVPEANPIADLDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A LP L K + G V+MT T+ + LL DY+ V+ ++ +
Sbjct: 238 VVLTHAHLDHSALLP-LLFKYGYDGPVYMTAPTRDLIGLLQLDYLDVAAKEGRTPPYESE 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ + LD+ ++ IK + AGH+LG+A+ F + ++++GD
Sbjct: 297 MVREELKHTITLDYGDVTDIAPDIKLTLHNAGHILGSAVAHFHIGDGLHNIVFSGDVHYS 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + ++ESTYG + + E++ D+I T G+V+IP
Sbjct: 357 DTRLFNGAVNDFPRV--ETLVMESTYGRRGDYQTDQEDSERKLIDLITRTYENDGKVVIP 414
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
AFA+GR+QEL+L+L+E + +PIY + ++ A++ Y + + +R +
Sbjct: 415 AFAVGRSQELMLVLEEAMRTE-KLPTMPIYLDG-MIREATAIHTAYPEFLRDGLRQRILH 472
Query: 310 ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ NPF ++ ++ + P +++++ G + G ++ D +NA +
Sbjct: 473 EDENPFLADQFEQVDGGEEMREAIAGGEPCIILSTSGMVTGGPIMSWLELLGGDPENALI 532
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMN--GLTAPLNMQ--VHYIS-FSAHADYAQTSTFLKE 420
GY EGTL + I +E+ L + G T L ++ + +S FS HAD F++
Sbjct: 533 FVGYQAEGTLGRRIQGGNREIQLTDRRGETNRLTLRFTIESVSGFSGHADRNGLENFVQS 592
Query: 421 L--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+ P I+ VHG+ +L + L + N + P+N ++
Sbjct: 593 MNPRPQEILCVHGDKSATDQLSSALYQKF---NCRTYAPRNLET 633
>gi|302348344|ref|YP_003815982.1| exonuclease [Acidilobus saccharovorans 345-15]
gi|302328756|gb|ADL18951.1| Putative exonuclease [Acidilobus saccharovorans 345-15]
Length = 429
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 205/441 (46%), Gaps = 33/441 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG+G EVGR+ + + ++G+ +L D G++ + P + P ++ L++TH HLDH
Sbjct: 13 LGSGREVGRAAIGVEHRGRMVLLDYGVNFDENEQPIYPL--HVRPKDVEALVLTHSHLDH 70
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ P + K R+ T T + +LLL D +K++ +++FD ++ + E
Sbjct: 71 VGAAPALF--ISVKPRLLATPLTLDVTRLLLYDMIKLNG---PNLIFDNSTVDDMLGVAE 125
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+D+ ++ E++ ++GH+ G+A +VD+ G +VLYT D + E + + +L
Sbjct: 126 SVDYERSFELDDFTLTLMSSGHIPGSASVLVDVNGRKVLYTSDMNTIETKLMNPHKLTGV 185
Query: 209 SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEY 268
D IIESTY H R EK F + + + +GG VL+PAF++ R QE++ +L+E
Sbjct: 186 KADAVIIESTYSTVTHPERENTEKEFYESVEDVVKRGGTVLVPAFSVARGQEIMCLLEEK 245
Query: 269 WSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDD 328
P + + + +Y + + F K + +
Sbjct: 246 GFGWP-------VWIDGMIRSVTDLYLAH---------SSFIKDPRLLAKALEDQKVVKG 289
Query: 329 FSD-----VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP 383
+ D P V+++S G L+ G S + ++K+A + Y GT + + E
Sbjct: 290 WGDRKKALKKPGVIISSAGMLKGGPSLYYYTRMVQNEKDAVFLVSYQAPGTPGRQALEE- 348
Query: 384 KEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP-PNIILVHGESHEMGRLKTK 442
V P+ ++ FS+H D+ LK L +ILVHGE RL +K
Sbjct: 349 -GVFFDGERKLPVKARLQIFDFSSHTDWKGVLQTLKSLAGVRKVILVHGEPQGQMRLASK 407
Query: 443 LMTELADCNTKIITPKNCQSV 463
+ EL D +++ P+N +
Sbjct: 408 IKDELGDV--EVLVPQNGDEI 426
>gi|45357994|ref|NP_987551.1| rhodopsin-like GPCR superfamily protein [Methanococcus maripaludis
S2]
gi|44920751|emb|CAF29987.1| Rhodopsin-like GPCR superfamily:Beta-lactamase-like [Methanococcus
maripaludis S2]
Length = 433
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 118/440 (26%), Positives = 222/440 (50%), Gaps = 22/440 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ ++ + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVELKTEKSTVLFDCGVKLSHE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLNLFRK 121
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++ + +F + AGH+ G++ ++ G RV+YTGD + ++ A+L
Sbjct: 122 ARYNHPKDFKDFEFEFFNAGHIPGSSTISLNYGGKRVVYTGDTKVSDTDLVKGADLSYTK 181
Query: 210 PDIC--IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
DI I+ESTYG + + R EK F + I T+ +GG L+P FA+ R+QE+L+IL++
Sbjct: 182 EDIACLIVESTYGDKNQENREDAEKNFINKIKETLERGGIPLVPVFAVDRSQEILMILNK 241
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTY--ILSMNERIRNQFANSNPFKFKHISPLNS 325
+ +F +P+Y+ + +K + Y L+ + ++ F N + K +
Sbjct: 242 H-----DF-GVPVYFDG-MGRKITRIMLQYPKFLNHPDDLKAAFLNVIEVESKDRPKI-- 292
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I D G +++++ G L+ G + D KN+ + GY VE T + ++ E +
Sbjct: 293 IKDIKQNG-GIIVSTAGMLEGGPIIPYIHEFMEDPKNSLIFTGYQVEETAGRKLL-ETGK 350
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ + P +++ FSAH + + +K+ P +++ HGE + K ++
Sbjct: 351 IEIGEFDIEP-KLEIASYQFSAHGEMDELREIVKKANPEVLVIQHGEEEVVKIFKDWAVS 409
Query: 446 ELADCNTKIITPKNCQSVEM 465
+ + N+ + TPK +++
Sbjct: 410 QGFNENS-VFTPKIGDKIKL 428
>gi|397690632|ref|YP_006527886.1| beta-lactamase domain protein [Melioribacter roseus P3M]
gi|395812124|gb|AFN74873.1| beta-lactamase domain protein [Melioribacter roseus P3M]
Length = 454
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 209/437 (47%), Gaps = 31/437 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
+G EVG + Y+ G IL DCGIHP G+ +LP FD ++ +D ++I+H H DH
Sbjct: 7 IGGAREVGANSYYLQIDGTGILLDCGIHPRKKGLDSLPLFDLLENYPLDFVIISHAHQDH 66
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQDINRSM 144
+LP+ ++K ++ T TK + + L + V + K F ++I+ +
Sbjct: 67 VGALPFLIKKFPHV-IIYTTPYTKELVSVTLHNAVNILKKETNGEENISFFTHEEIDLLV 125
Query: 145 DKIEVLDFHQTVEVNG------IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I D+++ E+ G +K + AGH+LG+AM M+ ++LYTGD + +
Sbjct: 126 RSIRDYDYNEEFELRGLNSSAQLKGCFFDAGHILGSAMVMIKTDDKKILYTGDMNLSDQS 185
Query: 199 HLRAAELPQFSP-DICIIESTYG---VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
A+L + D I+ESTYG +L RF + ++ IS+GG VLIP FA
Sbjct: 186 IEIGADLEALNDVDFLIMESTYGDTNTKLTGNWESERNRFINELNKIISKGGSVLIPVFA 245
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
LG+ QE+L+++ E + + + + Y + ++ ++Y Y + + R+
Sbjct: 246 LGKMQEMLMLIYEAIRS-GKLTDAEV-YTGGIGREISSIYDRYRYVVRRKNRDT------ 297
Query: 315 FKFKHI--SPLNSIDDFSDV--GPSVVMASPGGLQSG-LSRQLFDIWCSDKKNACVIPGY 369
+ K I S L I+D++ P ++AS G + G +S QL + W K A GY
Sbjct: 298 -ELKQIPQSNLYEINDYNHYKKNPGYLLASSGMMLEGTMSFQLAEFWLKQKDFAVFGVGY 356
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNM--QVHYISFSAHADYAQTSTFLKELMPPNII 427
+ T II+ L +N+ +++ FSAHA+ F K L P +I
Sbjct: 357 MDPATPGYKIINAKNNDALKLRGDREINVECEINRFYFSAHANRDGLINFAKSLKPETVI 416
Query: 428 LVHGESHEMGRLKTKLM 444
LVHGE L L+
Sbjct: 417 LVHGEESAQNWLGFHLL 433
>gi|54298302|ref|YP_124671.1| hypothetical protein lpp2360 [Legionella pneumophila str. Paris]
gi|53752087|emb|CAH13513.1| hypothetical protein lpp2360 [Legionella pneumophila str. Paris]
Length = 470
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 136/472 (28%), Positives = 226/472 (47%), Gaps = 42/472 (8%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSA 75
G ++ +T LGA V S ++ K IL DCG+ Y + A LP IDP
Sbjct: 15 GGKMKLTFLGATETVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHD 70
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV---------- 125
ID ++ITH H+DH+ LP L K F+G+++ T TKA+ +LL D +
Sbjct: 71 IDAVIITHAHIDHSGYLP-LLVKNGFQGKIYTTPGTKALCSILLPDSGHLQEEEARLANK 129
Query: 126 ---SKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDI 181
SK L+ E++ + ++ E +DF ++ + F + AGH++GAAM +
Sbjct: 130 YGFSKHQPALPLYTEKEAHTALQYFETIDFDTPHQLFHDFSFEYHRAGHIVGAAMVKIKT 189
Query: 182 AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHST 241
+++TGD R D ++A Q + D ++ESTYG +LH + + VI+ T
Sbjct: 190 QKGSIVFTGDIGRPYDPVMKAPAFIQET-DYLVMESTYGDRLHDATDPL-PQMAQVINQT 247
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+ +GG V+IPAFA+GRAQ LL + E ++P++ SP MA+ T++L
Sbjct: 248 VKRGGSVVIPAFAVGRAQSLLYFIYELKRQGQIPKDLPVFLDSP-----MAIDATHLLCT 302
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWC 357
+ + A + +N+ ++ ++ P +++A+ G Q G +
Sbjct: 303 YKEDHHLTAEQCRGLCHVATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKAFA 362
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTST 416
+ KN + G+ GT I++ K+V + +G P+ +V + S SAHADY +
Sbjct: 363 PNPKNTLLFTGFQAGGTRGARIVNGEKQVKI-HGSFIPIQAKVVVMSSTSAHADYPELLE 421
Query: 417 FLKELM--PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
+L L P + + HGE H LK K+ +L T P Q+ E++
Sbjct: 422 WLTHLTNPPKKVFITHGEPHSAQSLKQKIEKQLGFSCT---IPSYLQTEELW 470
>gi|308198432|pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
gi|308198433|pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 214/425 (50%), Gaps = 30/425 (7%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S IL DCG++ M Y E+ P + ID
Sbjct: 181 DQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDA 240
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH +P L K ++G V+ T T+ + LL DY+ V+ + + ++
Sbjct: 241 VIVTHAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESG 299
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ +++ LD+ + ++ IK + AGH+LG+A+ F + V++TGDY E
Sbjct: 300 MVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYE 359
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + I E+TYG QP EK V+ +TI +GG +IP
Sbjct: 360 KTRLFDPAVNKFPRV--ETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIP 417
Query: 252 AFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
AFA+GR+QE++++L+E PE +P+Y + + A++ T+ +N +R
Sbjct: 418 AFAVGRSQEVMIVLEESIRKGLIPE---VPVYLDG-MIWEATAIHATHPEYLNNDLRKLI 473
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF + P++S + + P V++A+ G + G + F + D +N
Sbjct: 474 FQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNT 533
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFL 418
V GY +GT+ + I KE+ + NG T L NM+V + FS H+D Q ++
Sbjct: 534 LVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHSDRRQLMEYV 593
Query: 419 KELMP 423
K + P
Sbjct: 594 KRMQP 598
>gi|26990009|ref|NP_745434.1| metallo-beta-lactamase [Pseudomonas putida KT2440]
gi|24984930|gb|AAN68898.1|AE016521_7 metallo-beta-lactamase family protein [Pseudomonas putida KT2440]
Length = 455
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/446 (28%), Positives = 216/446 (48%), Gaps = 34/446 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--AIDVLLITH 83
+T LG V S ++ +L DCG+ + + L + + P+ A+D +++TH
Sbjct: 3 LTFLGGTGTVTGSKFLLTRDSTRVLVDCGLFQGFKQLR-LRNWQPLPPALRALDAVVLTH 61
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------- 133
HLDH+ LP L + ++G ++ T AT A+ ++LL D ++ + E
Sbjct: 62 AHLDHSGYLP-VLVREGYRGPIYATPATCALAEILLLDSARLQEEQAEHANRHGYSKHAP 120
Query: 134 ---LFDEQDINRSMDKIEVLDFHQ-TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD R++ + HQ T+ G++ TAGH+LGAA + G VL++
Sbjct: 121 AQPLYTEQDAKRALALFRPVALHQVTMIAEGMELLLRTAGHILGAATVQISAEGQTVLFS 180
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD R +D +RA EL + + D+ +IESTYG + H P E+ VI+ T+ + G L
Sbjct: 181 GDLGRPQDPIMRAPELVR-TADVLLIESTYGDRQH-PAESTEQYLAKVINETLLRHGITL 238
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P+FA+GRAQ L+ L + +IPIY SP+A A+YQ Y +E
Sbjct: 239 VPSFAVGRAQLLMYYLYTLKRDR-LIPDIPIYLNSPMATDATALYQQY---RSEHRLTAA 294
Query: 310 ANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ + HI + ++D+ + P+V++A+ G G + +N+ +
Sbjct: 295 ECAAMCRGTHI--VRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSIL 352
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM-- 422
G+ GT I++ V L +G P+ QVH + + SAHAD + +L+
Sbjct: 353 FSGFQAGGTRGADIVAGAHSVRL-HGEDVPIRAQVHAMENLSAHADADEIMEWLRGFTRP 411
Query: 423 PPNIILVHGESHEMGRLKTKLMTELA 448
P ++HGE H L+ ++ EL
Sbjct: 412 PRQTYVIHGEPHAADTLRRRISLELG 437
>gi|21226797|ref|NP_632719.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452209278|ref|YP_007489392.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
gi|20905093|gb|AAM30391.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452099180|gb|AGF96120.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
Length = 637
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 214/425 (50%), Gaps = 30/425 (7%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S IL DCG++ M Y E+ P + ID
Sbjct: 178 DQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH +P L K ++G V+ T T+ + LL DY+ V+ + + ++
Sbjct: 238 VIVTHAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESG 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ +++ LD+ + ++ IK + AGH+LG+A+ F + V++TGDY E
Sbjct: 297 MVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYE 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + I E+TYG QP EK V+ +TI +GG +IP
Sbjct: 357 KTRLFDPAVNKFPRV--ETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIP 414
Query: 252 AFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
AFA+GR+QE++++L+E PE +P+Y + + A++ T+ +N +R
Sbjct: 415 AFAVGRSQEVMIVLEESIRKGLIPE---VPVYLDG-MIWEATAIHATHPEYLNNDLRKLI 470
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF + P++S + + P V++A+ G + G + F + D +N
Sbjct: 471 FQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNT 530
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFL 418
V GY +GT+ + I KE+ + NG T L NM+V + FS H+D Q ++
Sbjct: 531 LVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHSDRRQLMEYV 590
Query: 419 KELMP 423
K + P
Sbjct: 591 KRMQP 595
>gi|76800760|ref|YP_325768.1| mRNA 3'-end processing factor [Natronomonas pharaonis DSM 2160]
gi|76556625|emb|CAI48196.1| beta-lactamase domain protein [Natronomonas pharaonis DSM 2160]
Length = 639
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 129/462 (27%), Positives = 225/462 (48%), Gaps = 35/462 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
IT LG EVGR+ ++ +L DCG P G +PY + S +D ++
Sbjct: 184 ITTLGCCREVGRAAFILNTPETRVLIDCGDKPGAEG--EVPYLQVPEALGAGASNLDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVASKEGRTPPYDSSQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F V V ++GD ++
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDLKLTFHNAGHILGSAVTHFHVGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E+ ++I T ++GG+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSEETLKEIIRETTTEGGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E E +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAM-REGEIPTVPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + +D GP +V+++ G ++ G + S++K+
Sbjct: 477 ENPFLADQFNHIDGGEEERQEVADGGPCIVLSTSGMVEGGPIMSWLNHIGSEEKSTMTFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLM---NGL-TAPLNMQVHYI-SFSAHADYAQTSTFLKEL- 421
GY +GTL I S E+ + NG T LNM V + FS HAD F++ +
Sbjct: 537 GYQAQGTLGSRIQSGWDEIPMNDRGNGRGTLKLNMNVETVDGFSGHADRQGLMNFVRTMN 596
Query: 422 -MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P ++ VHG+ + L + L E N + PKN ++
Sbjct: 597 PRPEKVLCVHGDESSVQDLSSALYHEF---NMRTFAPKNLET 635
>gi|134046233|ref|YP_001097718.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132663858|gb|ABO35504.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 433
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/409 (27%), Positives = 201/409 (49%), Gaps = 21/409 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G +EVGRSCV + + T+LFDCG+ ++ + P D ++ D + +H HLDH
Sbjct: 7 GGASEVGRSCVEVKTEKSTVLFDCGVKLSHE-ESEYPILDNLNA---DCVFASHAHLDHT 62
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+P + K ++ T TKAI K LL D +K++ +D+ +D+ D+N+S++
Sbjct: 63 GGIPLLIRKGMVPA-IYATEVTKAISKELLRDSIKIAGAEGQDIPYDKADVNKSLNLFRK 121
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209
++ +F + AGH+ G++ ++ RV+YTGD + ++ A+L
Sbjct: 122 ARYNHPKRFKDFEFEFFNAGHIPGSSTISLNYGRKRVVYTGDTKVSDTDLVKGADLSYTK 181
Query: 210 PDIC--IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
DI IIESTYG + R EK F + I T+ +GG LIP FA+ R+QE+L+IL
Sbjct: 182 EDIACLIIESTYGDTNQEHREEAEKNFINKIKETLERGGIALIPVFAVDRSQEILMIL-- 239
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN--ERIRNQFANSNPFKFKHISPLNS 325
N +F +P+Y+ + +K + Y +N + ++ F N + K +
Sbjct: 240 ---NRHDF-GVPVYFDG-MGRKITRIMLQYPAFLNHPDELKAAFLNVTEVESKDRPKI-- 292
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I + G +++++ G L+ G + + KN+ + GY VE T + ++ E +
Sbjct: 293 IKEIRQNG-GIIVSTAGMLEGGPIVPYITEFMKEPKNSLIFTGYQVEETAGRHLL-ETGK 350
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ + P ++ FSAH + + +K+ P +++ HGE
Sbjct: 351 IEVGEFDVEP-KFEIASYQFSAHGEMDELRQIVKKANPETLVIQHGEEE 398
>gi|389843051|ref|YP_006345131.1| exonuclease [Mesotoga prima MesG1.Ag.4.2]
gi|387857797|gb|AFK05888.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Mesotoga prima MesG1.Ag.4.2]
Length = 443
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 135/460 (29%), Positives = 223/460 (48%), Gaps = 35/460 (7%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+ +TPLG G E+G + +S GK IL D G HP G +LP D+I+ +DV++I+H
Sbjct: 1 MTLTPLGGGREIGANSYLLSLDGKNILIDAGRHPVKEGYESLPEIDKIN--DLDVIMISH 58
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-----SKVSVEDMLFDEQ 138
H DH +SLPY ++ + M K + +L + V+V +K VE +L++
Sbjct: 59 SHYDHLSSLPYISQRWP-NAPILMAQENKGLALRILQNSVEVMKKKNAKDGVEPILYNHG 117
Query: 139 DINRSMDKIEVLDFHQTVEVNGI-KFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++N +I +++ Q ++ + Y AGHV+GAA ++ G R+LY+GD S +
Sbjct: 118 EVNELKRRIYPMEYFQRYSIDDVVDVALYPAGHVMGAASIFLEHRGRRILYSGDISLSQQ 177
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQ--PRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
+ A+LP+ + I E TYG + +Q R +R + + + GGR+L+P FAL
Sbjct: 178 LTIPPAQLPK-KVETLISEGTYGAKENQLLTRYSEIERLSKSVKRVLENGGRILMPVFAL 236
Query: 256 GRAQE---LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
GR QE +LL+L E + ++PIY + + ++Y + S++E+ R F S
Sbjct: 237 GRGQEAIYMLLMLME----KKKIPSVPIY-TNGMVASLSSLYMSNYESISEKDRKWFIKS 291
Query: 313 NPFKFKHISPLNSIDD--FSDVGPSVVMASPGGL-QSGLSRQLFDIWCSDKKNACVIPGY 369
F+ SI+ FS P++ + S G L + LS + K+A GY
Sbjct: 292 --FQNNVTVAPKSIERLLFSR-EPALFVFSAGMLVEDTLSYIFAKQMLPNSKDAIFFMGY 348
Query: 370 VVEGTLAKTIISEPK---EVTLMNGLTAPLNMQ-VHYISFSAHADYAQTSTFLKELMPPN 425
+ I+ K E M + + + + +FS HADY + + L P
Sbjct: 349 QSPESDGYKILQANKNGDERIQMGDDSIEIGTKNIDIFNFSGHADYQELLDLPRRLQPEK 408
Query: 426 IILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+I VHG+ + L +L E +I P N Q+VE+
Sbjct: 409 LIYVHGDEAALENLAEELQYEF-----EIQIPSNLQTVEL 443
>gi|298674377|ref|YP_003726127.1| KH-domain/beta-lactamase-domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287365|gb|ADI73331.1| KH-domain/beta-lactamase-domain protein [Methanohalobium
evestigatum Z-7303]
Length = 638
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 132/460 (28%), Positives = 226/460 (49%), Gaps = 39/460 (8%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIH-PAYSGMAALPYFDEIDP-SAIDV 78
DQ + IT LG EVGRSC +S ++ DCG++ + M Y E P S +D
Sbjct: 178 DQWVRITSLGGCKEVGRSCFILSTPESRVMIDCGVNIGSDENMTPYLYVPEAYPLSQLDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+ +P L K ++G V+ T T+ + LL DY+ V+ + ++
Sbjct: 238 VILTHAHLDHSGFIP-LLYKYGYQGPVYCTLPTRDLSALLQLDYIDVAGKEGRIVPYESS 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ ++ LDF + ++ IK + +GH+LG+A+ F + V++TGDY
Sbjct: 297 QVREALKHTITLDFEEVTDIAPDIKLTFHNSGHILGSAIAHFHIGDGLHNVVFTGDYKYG 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIP 251
R A + P+ + + ESTYG ++ EK VI +T+ + G VLIP
Sbjct: 357 STRLFDPAVNKFPRV--ETVVTESTYGSSNAVQPTLKDAEKHLQQVIINTLQKDGIVLIP 414
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
AFA+GR+QE++++L++ ++PIY + + A++ TY +N +R
Sbjct: 415 AFAVGRSQEVMIVLEDAIRKG-LIDDVPIYLDG-MIWEATAIHATYPEYLNNELRKSIFQ 472
Query: 310 ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
NPF P++S + + P V++A+ G + +G + F + S++ N V
Sbjct: 473 KGQNPFLSDSFKPVDSNELRQKIIDEPHPCVILATAGMMNAGPILEYFKAFASNENNTLV 532
Query: 366 IPGYVVEGTLAKTIISEPKEVTL---MNGLTAPL--NMQVHYI-SFSAHADYAQTSTFLK 419
GY +GTL + I KE+ + +NG T + NM V + FS H+D Q F+K
Sbjct: 533 FVGYQADGTLGRRIQKGWKEIPMSSSVNGGTQTINVNMNVEVVDGFSGHSDRKQLMDFVK 592
Query: 420 EL--MPPNIILVHGES----------HEMGRLKTKLMTEL 447
++ P + HGE ++ +++T+ +T L
Sbjct: 593 KMKPRPERVYTEHGEEKFCIDLASSIYKKNKIETRALTNL 632
>gi|374710344|ref|ZP_09714778.1| beta-lactamase domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 916
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/428 (28%), Positives = 206/428 (48%), Gaps = 30/428 (7%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLIT 82
L I+ LG G+E+G SC+++ ++ D G+ G LP +D D +L+T
Sbjct: 7 LKISVLGGGSEIGASCLHIQIGKTNLIIDAGMR--VHGDEPLPAIGMLDDLGKPDAILVT 64
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED----MLFDEQ 138
H H DH +LP + + +F T + ++++ D K+ D + + ++
Sbjct: 65 HAHADHIGALP-VVHRIYPDVPIFANPPTADLMQIMMRDSFKIMTQRCMDRRTLIPYTKE 123
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
+ ++ + + + + + + AGH+LGA MF ++ ++L +GD S + R
Sbjct: 124 QMEETLRALRLFPANGQMTIGDASVTLHRAGHILGAVMFTIETGEEKLLVSGDLSFKAGR 183
Query: 199 HLRAAELPQFS-PDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
+ AE+P S PD IIESTYG + H RN EKR D + I+ GG LIPAFALGR
Sbjct: 184 TIPGAEVPTGSRPDALIIESTYGNREHSDRNTEEKRLADNVAEVIAAGGFALIPAFALGR 243
Query: 258 AQELLLILDEYWSNH--PEFHNIPIY---YASPLAKKCMAVYQTYILSMNERIRNQF-AN 311
AQE+LLIL +Y P+F PIY +P++K +Y+ Y + + ++ N
Sbjct: 244 AQEVLLILQDYMDRGLIPQF---PIYVDGLVTPISK----IYRRYPHYLKGPVAHRIQQN 296
Query: 312 SNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
+ F + D V P+ ++AS G L G S + +KNA I G
Sbjct: 297 GDAFLTEGRCTAVEPKDREQVLKGKPACIVASSGMLIGGASVWYAERLVGSEKNAVFITG 356
Query: 369 YVVEGTLAKTII----SEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
Y E + + ++ E +E+ L NG+ + +V SAH D + + F+ + P
Sbjct: 357 YQDEESPGRKLLRLAEGESRELEL-NGVVHQVKCRVDKYGLSAHGDAGELTRFISMIRPA 415
Query: 425 NIILVHGE 432
++VHG+
Sbjct: 416 KTLIVHGD 423
>gi|429192458|ref|YP_007178136.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
gi|448325869|ref|ZP_21515248.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
gi|429136676|gb|AFZ73687.1| KH-domain/beta-lactamase-domain protein [Natronobacterium gregoryi
SP2]
gi|445614014|gb|ELY67697.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
Length = 644
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 222/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ISTLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ VI+ Q G+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSEEKLKRVINEAYEQDGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+++E E ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVIEEAMREG-EIPSMPVHLDG-MIWEATAIHTTYPEYLRDELRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + D +D GP +++++ G + G D + V
Sbjct: 477 ENPFLAEEFNHIDAGEEERQDVADGGPCIILSTSGMVTGGPIMSWLSHIGPDPDSKLVFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + EV M G T LN+ V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGGNNGRGTLQLNVDVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|332530295|ref|ZP_08406241.1| beta-lactamase domain protein [Hylemonella gracilis ATCC 19624]
gi|332040281|gb|EGI76661.1| beta-lactamase domain protein [Hylemonella gracilis ATCC 19624]
Length = 452
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 132/445 (29%), Positives = 208/445 (46%), Gaps = 32/445 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHF 84
+T LGA V S + ++G +L DCG+ Y + L + D DP+ +D +++TH
Sbjct: 3 LTFLGAAGTVTGSRYLLEHEGHRLLVDCGLFQGYKNLRELNWEDFPFDPATLDAVVLTHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SKVSVE 131
HLDH+ +LP L + F+G + T AT + LLL D + SK
Sbjct: 63 HLDHSGALPLLLRRG-FRGPMHATPATIELCHLLLPDSGHLQEEDAAYANRHGSSKHHPA 121
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ E+D S+ + LDF + EV G+ AGH+LGAA ++L++G
Sbjct: 122 LALYTEEDARHSLRYLRPLDFGVSEEVLPGLHVTLAPAGHILGAAHATFSDGRTKILFSG 181
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
D RE+D + P+ + D ++ESTYG ++H P + ++I T S+GG V+I
Sbjct: 182 DVGREDDLIMEPPTPPE-AVDCMVVESTYGDRVH-PTVDNQALLGEIIQRTASRGGSVVI 239
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVY----QTYILSMNERIR 306
PAFA+GRAQ LL+++ + H ++PI+ SP+A +Y + + LS E R
Sbjct: 240 PAFAVGRAQALLVLIARLKAAH-AIPDLPIFLDSPMAIDMTGIYLRHHKLHRLSPEESQR 298
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
LN + PS+++++ G G D +N V+
Sbjct: 299 MCRVAKMVRTTDESRALNEVRY-----PSIIISASGMATGGRVLHHIKRLAPDHRNTIVL 353
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL-MPP 424
GY GT I + K + + G PLN +V + SAHAD Q ++ PP
Sbjct: 354 AGYQAGGTRGARIAAGEKSIRIF-GQDVPLNAEVTQLPGMSAHADAPQLLRWMGAAPQPP 412
Query: 425 -NIILVHGESHEMGRLKTKLMTELA 448
+ L HGE +L+ ++ EL
Sbjct: 413 QQVFLTHGEPEAADQLRQRIERELG 437
>gi|381150272|ref|ZP_09862141.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Methylomicrobium album BG8]
gi|380882244|gb|EIC28121.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Methylomicrobium album BG8]
Length = 474
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 145/480 (30%), Positives = 225/480 (46%), Gaps = 52/480 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA---ALPYFDEIDPSAIDVLLITHFHL 86
GA V SC + GK +L DCG++ M A P+ DP+ ID LL+TH HL
Sbjct: 7 GADQNVTGSCHLLEAAGKKMLIDCGLYQGGREMEEENAEPF--GFDPAGIDYLLLTHAHL 64
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV------SKVSVEDMLFDEQDI 140
DH +P L K FKG + T AT + +++L D K+ K E I
Sbjct: 65 DHCGRIP-LLVKQGFKGEIIATAATCELARIVLLDSAKLLEDEANYKARKASRHGHEASI 123
Query: 141 NRSMDKIEVLD----------FHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV----R 185
+ ++VL+ + Q V + GIK AGH+LG+A ++DI R
Sbjct: 124 EPIYNVVDVLNCFGFFGRAATYDQPVAIAPGIKATFIDAGHILGSAAIVLDIEQGGRPHR 183
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
+L++GD +R P + DI ++E+TYG +LH+ + F I T+ +G
Sbjct: 184 LLFSGDLGYSGRAIIRDPAPPPPA-DIVVMETTYGDRLHKALEPTREEFYAAIRKTLGRG 242
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI 305
G V+IP+FAL RAQELL L E +P++ SP+A +YQ + +E
Sbjct: 243 GNVIIPSFALERAQELLYYLREGIEQRRLPPYLPVFLDSPMAISATQIYQRHPECFDEET 302
Query: 306 RNQFANS-NPFKF------KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLF--DIW 356
R A+ +PF F + + +I++F+ G +V++A G G + ++W
Sbjct: 303 RATLASGQDPFMFPGLRFCRETADSIAINNFA--GGAVIIAGSGMCTGGRVKHHLKHNLW 360
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTS 415
+ NA + G+ GTLA+ I+ + V + G P+N ++H I FSAHAD A+
Sbjct: 361 --GRNNAVIFVGFAAYGTLARQIVDSAESVRIF-GEEIPVNAEIHTIGGFSAHADQAELL 417
Query: 416 TFLKELMPPNI-ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQ--SVEMYFNSEKM 472
+ K P + LVHG+ + KL+ NT++ P Q +E + S M
Sbjct: 418 AWHKRAGRPKVTFLVHGDKEVIPIFANKLL------NTEVEIPALHQRYDLEKWLESPGM 471
>gi|374636818|ref|ZP_09708366.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557805|gb|EHP84189.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 426
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 222/449 (49%), Gaps = 34/449 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT GA EVGRSC+ + IL DCG+ +G+ P D+I +D + ++H H
Sbjct: 3 ITFRGAAMEVGRSCIEIDSGESKILLDCGVKLTGNGIE-YPILDDI---KVDGVFVSHAH 58
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH +LP K + T TK I K+LL D +K+ + F+ DI + ++
Sbjct: 59 LDHVGALPVLTHKQ-INVPIHSTPLTKEITKILLKDSLKIGMIEHISQKFNMHDIKKCIN 117
Query: 146 KIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE 204
+ V ++ V + + AGH+ G+A ++D ++LYTGD + R ++ A+
Sbjct: 118 -LHVPTYYNKRRVFMDFVYEYFDAGHIPGSASILLDYGDKKILYTGDVKVRDTRLVKGAD 176
Query: 205 LPQFSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELL 262
L + DI IIESTYG +H R EK+F + TI++GG LIP FA+ RAQE+L
Sbjct: 177 LSYTNEDIDVLIIESTYGNSIHPDREETEKKFLQKVKETINRGGVALIPVFAVNRAQEIL 236
Query: 263 LILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYI-LSMNERIRN----QFANSNPFKF 317
LIL E E +IPI++ MAV T I L +E +R+ + A S +
Sbjct: 237 LILAE------EKFDIPIFFDG------MAVEITEIMLRHSEYLRDAERLEKAYSMVYVV 284
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSG-LSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
+ + + ++ +V+ + G L G + + ++W D KN+ ++ GY VE T
Sbjct: 285 ESRDERDKVIEYLKENGGIVVTTAGMLDGGPILHYISEMW-DDPKNSLILTGYQVEDTNG 343
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ +I +++G ++V FSAHA + + ++ P +I+ HG+ E+
Sbjct: 344 RYLIETG--YLILDGQEIKPKLEVTLFDFSAHAGMDELHEIVNKVNPETLIIQHGDELEV 401
Query: 437 GRLKTKLMTELADCNTKIITPKNCQSVEM 465
K + + + + TPK +S+E+
Sbjct: 402 LTFKKWAIEKGFNVH----TPKLGESMEI 426
>gi|217075847|gb|ACJ86283.1| unknown [Medicago truncatula]
Length = 230
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 128/222 (57%), Gaps = 7/222 (3%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG EVG+SCV + GK I+FDCG+ ++ + P F +I S A+D ++ITH
Sbjct: 8 LGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDALDCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FHLDH +L YF E + G V+MT+ KA+ L+L DY KV E+ F I
Sbjct: 68 FHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEEEQFTSDHIAE 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QTV+V+ ++ Y AGHV+GAAMF V + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNMTPDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
AA++ + D+ I ESTY + + RE+ F +H +S
Sbjct: 188 AAQIDRLRLDLLITESTYATTIRDSKYAREREFLKAVHKCVS 229
>gi|397667286|ref|YP_006508823.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130697|emb|CCD08943.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 132/449 (29%), Positives = 212/449 (47%), Gaps = 39/449 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A LP IDP ID ++
Sbjct: 3 LTFLGATETVTGSKYLLTVGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SK 127
ITH H+DH LP L K F+G+++ T TKA+ +LL D + SK
Sbjct: 59 ITHAHIDHTGYLP-LLVKNGFRGKIYATPGTKALCSILLPDSGHLQEEEARLANKYGFSK 117
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
L+ E++ ++ E +DF V F + AGH++GAAM + +
Sbjct: 118 HQPALPLYSEKEARTALQYFETIDFDTPHSVFQEFSFEYHRAGHIVGAAMVKIKTPKASI 177
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
++TGD R D ++A + + D ++ESTYG +LH + + VI+ T+ +GG
Sbjct: 178 VFTGDIGRPYDPVMKAPSAIEET-DYLVMESTYGDRLHDATDPL-PQMAQVINQTVKRGG 235
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
V+IPAFA+GRAQ LL + E +IP++ SP MA+ T++L +
Sbjct: 236 SVIIPAFAVGRAQSLLYFIYELKQQGAIPKDIPVFLDSP-----MAIDATHLLCTYKEDH 290
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ A + +N+ ++ ++ P +++A+ G Q G + D K+
Sbjct: 291 HLTAEQCRGLCHVATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKAFAPDPKS 350
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL 421
+ G+ GT I++ ++V + +G P+ QV + S SAHADY + +LK L
Sbjct: 351 TLLFTGFQAGGTRGARIVNGERQVKI-HGSLIPIQAQVVVMSSTSAHADYLELLEWLKHL 409
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELA 448
P + + HGE H LK K+ +
Sbjct: 410 TKQPKKVFITHGEPHSAQSLKEKIEKQFG 438
>gi|282165070|ref|YP_003357455.1| hypothetical protein MCP_2400 [Methanocella paludicola SANAE]
gi|282157384|dbj|BAI62472.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 636
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 221/446 (49%), Gaps = 26/446 (5%)
Query: 11 KRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFD 69
K+ P++ + + IT LG EVGRS +S IL DCG+ A + Y
Sbjct: 168 KKIHRPITSKEQWIRITTLGGCKEVGRSSFLLSTPETRILIDCGVSTGAEANGTPYLYVP 227
Query: 70 EIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
E+ P S ID +++TH HLDH +P L K ++G V+MT T+ + LL DY++V+
Sbjct: 228 EVSPLSNIDAVVLTHAHLDHCGMIP-LLYKYGYEGPVYMTPPTRDLMALLQLDYIEVANR 286
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVR 185
+ ++ I ++ L++ ++ I+ Y +GH+LG+A+ F V
Sbjct: 287 EGKRPPYESAMIRETLKHTITLNYGDVTDIAPDIRLTFYNSGHILGSAIAHFHVGEGLYN 346
Query: 186 VLYTGDYSREEDRHLRAA--ELPQFSPDICIIESTYG-VQLHQP-RNIREKRFTDVIHST 241
V ++GD+ E+ R A + P+ + ++ESTYG + QP R E ++I T
Sbjct: 347 VAFSGDFKYEKTRLFDPAVNQFPRI--ETMVMESTYGGMHDMQPSRREAEIDLQNIIRRT 404
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+ +GG+ L+P FA+GR+QE++++L+E N+P+Y + + A++ TY +
Sbjct: 405 LQRGGKALVPTFAVGRSQEVMIVLEEAIRKGI-IDNVPVYLDG-MIWEATAIHTTYPEYL 462
Query: 302 NERIRNQF--ANSNPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDI 355
N +++ NPF ++S +D P +V+A+ G + G + F
Sbjct: 463 NVELQDMIFHKGQNPFLSSSFVQVDSQQKRQSILADPSPCIVLATSGMMNGGPVMEYFKQ 522
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYIS---FSAHADY 411
+ +DK+N + GY EGT+ + I E+ + G T + +++ + FS H+D
Sbjct: 523 YGADKRNTLIFVGYQAEGTMGRRIQKGWTEIPMSTEGRTDVMRVEMEVATVDGFSGHSDR 582
Query: 412 AQTSTFLKEL--MPPNIILVHGESHE 435
Q ++K + P II HG+ ++
Sbjct: 583 RQLMEWVKRMDPRPERIITNHGDENK 608
>gi|91772428|ref|YP_565120.1| beta-lactamase-like protein [Methanococcoides burtonii DSM 6242]
gi|91711443|gb|ABE51370.1| RNA-metabolizing metallo-beta-lactamase protein [Methanococcoides
burtonii DSM 6242]
Length = 636
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/453 (28%), Positives = 220/453 (48%), Gaps = 36/453 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS-GMAALPYFDEIDP-SAIDVLLITH 83
+T LG EVGRSC +S I+ DCG++ M Y E+ P + ID ++ITH
Sbjct: 183 VTSLGGCKEVGRSCFLLSTPESKIMIDCGVNVGSDDNMTPYLYLPEVQPLNQIDAVVITH 242
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH +P L K ++G ++ T T+ I LL D++ V+ + ++ ++ +
Sbjct: 243 AHLDHQGLVP-LLYKYGYEGPIYCTSPTRDIMTLLQLDFIDVAAKEGKKPPYESTNVRDA 301
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHL 200
+ LD+ + ++ +K + AGH++G+A+ F + V+ TGDY R
Sbjct: 302 LKHTIALDYEEVTDIAPDVKLTFHNAGHIIGSAISHFHIGDGLHNVVVTGDYKYGPTRLF 361
Query: 201 RAA--ELPQFSPDICIIESTYGVQLHQPRNIRE--KRFTDVIHSTISQGGRVLIPAFALG 256
A + P+ + I ESTYG +++E K +I +T++ G VLIPAFA+G
Sbjct: 362 DPAVNKFPRV--ETVITESTYGAASAVQPSLKEAEKNLQQIIKNTLNNKGIVLIPAFAVG 419
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNP 314
R+QE++++L++ ++P+Y + + A++ TY +N +R NP
Sbjct: 420 RSQEVMIVLEDAIRRGI-IDDVPVYLDG-MIWEATAIHATYPEYLNNNLRKLIFQKGQNP 477
Query: 315 FKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F + P++S D D P V++++ G + +G + F + D N V GY
Sbjct: 478 FLAECFKPVDSNDLRKKIIEDPHPCVILSTSGMMNAGPVMEYFKAFAPDPNNTLVFVGYQ 537
Query: 371 VEGTLAKTIISEPKEVTLMN-GLT--APLNMQVHYI-SFSAHADYAQTSTFLKEL--MPP 424
+GTL + I KE+ + + G T +NM V + FS H+D Q + K++ P
Sbjct: 538 ADGTLGRRIQKGWKEIPVSSKGGTEVVKMNMGVEVVDGFSGHSDRKQLMEYFKKMKPQPE 597
Query: 425 NIILVHGES----------HEMGRLKTKLMTEL 447
+ HG+ H+ RL+T+ +T L
Sbjct: 598 RVFTEHGDERSCIDLASSLHKKYRLETRALTNL 630
>gi|148547684|ref|YP_001267786.1| beta-lactamase domain-containing protein [Pseudomonas putida F1]
gi|395449495|ref|YP_006389748.1| beta-lactamase domain-containing protein [Pseudomonas putida ND6]
gi|397698313|ref|YP_006536196.1| beta-lactamase domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|421521140|ref|ZP_15967799.1| beta-lactamase domain-containing protein [Pseudomonas putida LS46]
gi|148511742|gb|ABQ78602.1| beta-lactamase domain protein [Pseudomonas putida F1]
gi|388563492|gb|AFK72633.1| beta-lactamase domain-containing protein [Pseudomonas putida ND6]
gi|397335043|gb|AFO51402.1| beta-lactamase domain-containing protein [Pseudomonas putida
DOT-T1E]
gi|402755080|gb|EJX15555.1| beta-lactamase domain-containing protein [Pseudomonas putida LS46]
Length = 455
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 216/446 (48%), Gaps = 34/446 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--AIDVLLITH 83
+T LG V S ++ +L DCG+ + + L + + P+ A+D +++TH
Sbjct: 3 LTFLGGTGTVTGSKFLLTRDSTRVLVDCGLFQGFKQLR-LRNWQPLPPALRALDAVVLTH 61
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------- 133
HLDH+ LP L + ++G ++ T AT A+ ++LL D ++ + E
Sbjct: 62 AHLDHSGYLP-VLVREGYRGPIYATPATCALAEILLLDSARLQEEQAEHANRHGYSKHAP 120
Query: 134 ---LFDEQDINRSMDKIEVLDFHQ-TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD R++ + HQ T+ G++ TAGH+LGAA + G VL++
Sbjct: 121 AQPLYTEQDAKRALALFRPVALHQVTMIAEGMELLLRTAGHILGAATVQISAEGQTVLFS 180
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD R +D +RA EL + + D+ +IESTYG + H P E+ VI+ T+ + G L
Sbjct: 181 GDLGRPQDPIMRAPELVR-TADVLLIESTYGDRQH-PAESTEQYLAKVINETLLRHGITL 238
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P+FA+GRAQ L+ L + ++P+Y SP+A A+YQ Y +E
Sbjct: 239 VPSFAVGRAQLLMYYLYTLKRDR-LIPDVPVYLNSPMATDATALYQQY---RSEHRLTAA 294
Query: 310 ANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ + HI + ++D+ + P+V++A+ G G + +N+ +
Sbjct: 295 ECAAMCRGTHI--VRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSIL 352
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM-- 422
G+ GT I++ V L +G P+ QVH + + SAHAD + +L+
Sbjct: 353 FSGFQAGGTRGADIVAGAHSVRL-HGEDVPIRAQVHAMENLSAHADADEIMEWLRGFTRP 411
Query: 423 PPNIILVHGESHEMGRLKTKLMTELA 448
P ++HGE H L+ ++ EL
Sbjct: 412 PRQTYVIHGEPHAADTLRRRISLELG 437
>gi|448306255|ref|ZP_21496164.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
gi|445598669|gb|ELY52724.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
Length = 645
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 133/468 (28%), Positives = 227/468 (48%), Gaps = 41/468 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRAPPYESEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD ++
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI+ T +GG+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQQDSEEKLKEVINKTHEKGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+++E + + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVIEEAMRSG-DIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + D +D GP +V+++ G + G D + V
Sbjct: 477 ENPFLAEEFNHIDAGEEERQDVADGGPCIVLSTSGMVTGGPIMSWLGHIGPDPDSTLVFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLM--NG---LTAPLNMQVHYI-SFSAHADYAQTST 416
GY +GTL + I S EV M NG T LNM V + FS HAD A
Sbjct: 537 GYQAQGTLGRRIQSGWDEIPTSEVGAMGNNGGGRGTLSLNMDVETVDGFSGHADRAGLEN 596
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 FVKTMNPRPEKVLCVHGDERSTQDLSSAL---YHDYNMRTFAPKNLET 641
>gi|432331211|ref|YP_007249354.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Methanoregula formicicum SMSP]
gi|432137920|gb|AGB02847.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Methanoregula formicicum SMSP]
Length = 636
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 124/441 (28%), Positives = 214/441 (48%), Gaps = 21/441 (4%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
L R +R+ +T LG EVGR+ +S +L DCG P +G Y
Sbjct: 172 LPARGDETARKDQWARVTTLGCCREVGRAAFLLSTPDSKVLIDCGEKPDNAGATPYIYVP 231
Query: 70 EIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
EI P S++D +++TH HLDH A +P L K ++G V+ T T+ + +L DY+ V
Sbjct: 232 EIYPLSSLDAVVLTHAHLDHCALVP-LLYKYGYEGPVYSTPPTRDLSAMLQLDYLDVINK 290
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVR 185
+ + ++ + L++ ++ IK + AGH+LG+A+ F +
Sbjct: 291 EGRKVPYSSNEVKTYIKHSVTLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHLGDGMYN 350
Query: 186 VLYTGDYSREEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHST 241
+ +TGD++ + R A + P+ + +ESTYG Q R E D I+
Sbjct: 351 IAFTGDFNYAKSRLFNPAINQFPRL--EALFMESTYGGSNDFQQARADCEGMLYDTINRV 408
Query: 242 ISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM 301
+ +GG+V+IPAF++GR+QE++L L+E + + + IY + ++ A++ TY +
Sbjct: 409 LQRGGKVIIPAFSVGRSQEVMLALEEGMRTN-KIPKVKIYLDG-MIREATAIHTTYPEYL 466
Query: 302 NERIRNQF--ANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIW 356
N +RNQ NPF + ++S D V P V++++ G L G +
Sbjct: 467 NTDLRNQIFREGMNPFLAECFQQVDSQDLREKVIGGDPCVIISTSGMLNGGPVMEYLMNL 526
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTS 415
D+KNA V GY +GT + I +EV + T +N+++ + FS H+D Q
Sbjct: 527 AQDEKNALVFVGYQADGTYGRRIQKGWREVPMGRKGTITINLEIVTVDGFSGHSDRRQLM 586
Query: 416 TFLKEL--MPPNIILVHGESH 434
++ ++ P I +HG+ +
Sbjct: 587 NYIGQISPRPEKIFCIHGDEN 607
>gi|385811724|ref|YP_005848120.1| RNA-processing exonuclease [Ignavibacterium album JCM 16511]
gi|383803772|gb|AFH50852.1| Putative RNA-processing exonuclease [Ignavibacterium album JCM
16511]
Length = 466
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 124/454 (27%), Positives = 224/454 (49%), Gaps = 45/454 (9%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPA-----YSGMAALPYFDEIDPSAIDVLLITH 83
+G V S + GK IL +CG+ Y P+ DP IDVL+++H
Sbjct: 6 IGGARTVTGSLHLLHINGKKILLECGLFQGRRKDTYEKNKNFPF----DPKEIDVLILSH 61
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------ 131
H+DH+ ++P + K F G ++ T AT + +++L D + + +E
Sbjct: 62 AHIDHSGNIPNLVSKG-FDGLIYATAATVDLCQIMLRDSAHLQEKDIEWVNKKHSRKGEP 120
Query: 132 --DMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIA--GVRV 186
+ L+ D+ +S++ + +++T+E+ +GI F AGH+LG+A ++I G +
Sbjct: 121 PVEPLYTLDDVEKSIEHFIGVQYNKTIELFDGINFSFRDAGHILGSAGIHLEIKEPGNKK 180
Query: 187 L---YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
L ++GD R E +++ ++ + D+ I+ESTYG +LH E+ I+ ++
Sbjct: 181 LSFGFSGDIGRPESPVIKSPDVLR-ELDVIIMESTYGNRLHSSTEEVEEELAQTINQIVN 239
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G+++IPAFA+GR Q ++ +L + + N IPIY SPLA V++++ ++
Sbjct: 240 DNGKIIIPAFAVGRTQTIVYVLHKLF-NQNRIPEIPIYVDSPLAVDATNVFRSHPECLDR 298
Query: 304 RIRNQFANS--NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWC 357
F + +PF F + + +++ ++ GP +++++ G + G
Sbjct: 299 ETYRVFLQNGEDPFGFSRLKYIKKVEESKELNDKPGPMIIISASGMAEGGRILHHLANNI 358
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTST 416
+ KN + GY E TLA+ I+ K V + G + +V + FSAHAD +
Sbjct: 359 ENPKNLILFVGYAAEQTLARKIMDGEKRVNIF-GEEYEVRAKVKTMDYFSAHADQNELLD 417
Query: 417 FLKELMPP----NIILVHGESHEMGRLKTKLMTE 446
+L+ L P NI LVHGE + L+ KL+T+
Sbjct: 418 YLR-LNPTKKLRNIFLVHGEEDQAIPLRQKLLTK 450
>gi|386012036|ref|YP_005930313.1| Metallo-beta-lactamase family protein [Pseudomonas putida BIRD-1]
gi|313498742|gb|ADR60108.1| Metallo-beta-lactamase family protein [Pseudomonas putida BIRD-1]
Length = 455
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 128/446 (28%), Positives = 215/446 (48%), Gaps = 34/446 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--AIDVLLITH 83
+T LG V S +S +L DCG+ + + L + + P+ A+D +++TH
Sbjct: 3 LTFLGGTGTVTGSKFLLSRDSTRVLVDCGLFQGFKQLR-LRNWQPLPPALRALDAVVLTH 61
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------- 133
HLDH+ LP L + ++G ++ T AT A+ ++LL D ++ + E
Sbjct: 62 AHLDHSGYLP-VLVREGYRGPIYATPATCALAEILLLDSARLQEEQAEHANRHGYSKHAP 120
Query: 134 ---LFDEQDINRSMDKIEVLDFHQ-TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD R++ + HQ T+ G++ TAGH+LGAA + G VL++
Sbjct: 121 AQPLYTEQDAKRALALFRPVALHQVTMIAEGMELLLRTAGHILGAATVQISAEGQTVLFS 180
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD R +D +RA EL + + D+ +IESTYG + H + E+ VI+ T+ + G L
Sbjct: 181 GDLGRPQDPIMRAPELVR-TADVLLIESTYGDRQHSAEST-EQYLAKVINETLLRHGITL 238
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P+FA+GRAQ L+ L + +IPIY SP+A +YQ Y +E
Sbjct: 239 VPSFAIGRAQLLMYYLYTLKRDR-LIPDIPIYLNSPMATDATVLYQQY---RSEHRLTAA 294
Query: 310 ANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ + HI + ++D+ + P+V++A+ G G + +N+ +
Sbjct: 295 ECAAMCRGTHI--IRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSIL 352
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM-- 422
G+ GT I++ V L +G P+ QVH + + SAHAD + +L+
Sbjct: 353 FSGFQAGGTRGADIVAGAHSVRL-HGEDVPIRAQVHAMENLSAHADADEIMEWLRGFTRP 411
Query: 423 PPNIILVHGESHEMGRLKTKLMTELA 448
P ++HGE H L+ ++ EL
Sbjct: 412 PRQTYVIHGEPHAADTLRRRISLELG 437
>gi|298247547|ref|ZP_06971352.1| RNA-metabolising metallo-beta-lactamase [Ktedonobacter racemifer
DSM 44963]
gi|297550206|gb|EFH84072.1| RNA-metabolising metallo-beta-lactamase [Ktedonobacter racemifer
DSM 44963]
Length = 776
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 122/438 (27%), Positives = 213/438 (48%), Gaps = 24/438 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFDEIDPSAIDVLLITHF 84
+T LG +EVG SC + G+ +L D G+ PA G + LP +D + L+ITH
Sbjct: 3 LTFLGGASEVGASCTLLQVVGRKLLVDGGMRPAAREGQSRLPDLSLLDKQPPEALIITHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-----KVSVEDMLFDEQD 139
H+DH +LP + ++ T +T+ + ++LL D V++ + E L++ +
Sbjct: 63 HIDHTGALP-LIASLLPHIPIYATESTRVLTEVLLRDSVRIMEQEHLRPDGETPLYNAEQ 121
Query: 140 INRSMDKIEVLDFHQT-VEVNG---IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
++ + +I+V+ F Q + G I AGH+LGAAM ++ + +TGD S
Sbjct: 122 VDAFLGRIQVMGFRQPFAPLAGSPDITVQFIPAGHILGAAMLFLETPEGTLFHTGDISLT 181
Query: 196 EDRHLRAAELPQF-SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
+ R ++ ++ D+ I E TYG + H R E++ + + +++GGR+L PAFA
Sbjct: 182 DQRTIKGLDINALPRADVMITEGTYGNRSHSSRKEEEQKLAATVQAVLARGGRILCPAFA 241
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP 314
+GRAQE++LIL Y ++ + +PIY + C VYQ + ++ N
Sbjct: 242 VGRAQEIILILKAYRASG-KISPVPIYLDGMVRSVC-DVYQQQSHDLQPTLQRHLVNGRR 299
Query: 315 FKFK----HISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI- 366
F H+ + S + V P +V++S G L G S L+ + + ++ C++
Sbjct: 300 PLFADPQLHVFSVRSFERQGLVLHTKPKMVISSSGMLSGGAS-PLYALDIAAREQDCLLF 358
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLT-APLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
GY E + +++ + + G LN QV + S HAD Q + ++ P
Sbjct: 359 TGYQDEESPGYALLNAKQGDRIRIGEQFVTLNCQVTRYNLSGHADSNQIQAVVSKVQPAR 418
Query: 426 IILVHGESHEMGRLKTKL 443
+ILVHG+S + L +
Sbjct: 419 LILVHGDSEALEALSQRF 436
>gi|448313752|ref|ZP_21503464.1| KH-domain/beta-lactamase-domain-containing protein
[Natronolimnobius innermongolicus JCM 12255]
gi|445597062|gb|ELY51140.1| KH-domain/beta-lactamase-domain-containing protein
[Natronolimnobius innermongolicus JCM 12255]
Length = 644
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 129/467 (27%), Positives = 221/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRASFIISTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI+ T +GG+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSEEKLKEVINETYDKGGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E N + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMRNG-DIPEMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D P +++++ G + G D + V
Sbjct: 477 ENPFLAEEFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSTMVFV 536
Query: 368 GYVVEGTLAKTIISEPKEV---------TLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I S E+ T LN+ V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQSGWDEIPTSEVGAMGNGGGRGTLELNVDVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
++ + P ++ VHG+ L + L E + + PKN ++
Sbjct: 597 VRTMNPRPEKVLCVHGDERSTQDLSSALYHEF---DMRTFAPKNLET 640
>gi|428308354|ref|YP_007119299.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249902|gb|AFZ15677.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 822
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 211/442 (47%), Gaps = 41/442 (9%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L +TPLGA +G SC + I+ D G P G LP F+ + +P ++
Sbjct: 243 EQDKLSVTPLGAARGIGASCFRVLIGPYEIVLDAGTRP--KGDKPLPAFEYLRNP---NL 297
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--LFD 136
+LI+H H DH +LP F K + T T+ I ++LTD +K+ + + ED LFD
Sbjct: 298 ILISHAHQDHIGALPTF-HKMFPACPMICTVGTRQIADVMLTDCLKIQQHN-EDFQELFD 355
Query: 137 EQDINRSMDKIEV----LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
E D+N+++ +++ +DF + G+K AGH+LGAA + +LYTGDY
Sbjct: 356 ENDLNQTIFQLQTKPVGVDFE---PLPGLKVRFIHAGHILGAACIYIRYGERSLLYTGDY 412
Query: 193 SREEDR---HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
+ R LR A+LP+ D+ I ESTYG H R +E+ + +S+GG VL
Sbjct: 413 NTSNSRTTDGLRLADLPE--ADMLITESTYGADNHPNRKTQEQELLKAVAEVVSKGGNVL 470
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFH--NIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
IPAFALGRAQE++L + FH NIP+Y L + V+ I + I+N
Sbjct: 471 IPAFALGRAQEIILAI----RTSALFHKLNIPVYVDG-LVRAVTDVFIENINLLPASIQN 525
Query: 308 QFANSNPF----KFKHISPLNSIDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
S PF I P+ + + PSV++AS G L G S
Sbjct: 526 FALQSEPFFNPDSHPPIIPIAHPKERPLAIAKPSVIIASSGMLSGGASVYYATTLLERDN 585
Query: 362 NACVIPGYVVEGTLAKTI--ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
A I GY E + + + + + E+ N + + + S HAD + +
Sbjct: 586 AAVFISGYTDEESPGRFLQGLQQGDEIEFNNKKLV-VKADIRRFNLSGHADKVGLTQVIN 644
Query: 420 ELMPPNIILVHGES---HEMGR 438
+ P ++IL+HG HE+ R
Sbjct: 645 RVNPKHLILIHGSMNALHELSR 666
>gi|428304113|ref|YP_007140938.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245648|gb|AFZ11428.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 804
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/442 (31%), Positives = 211/442 (47%), Gaps = 41/442 (9%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI-DPSAIDV 78
E D+L +TPLGA +G SC + I+ D G P G LP F+ + +P ++
Sbjct: 225 EQDKLSVTPLGAARGIGASCFRVLIGPYEIVLDAGTRP--KGDKPLPAFEYLRNP---NL 279
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--LFD 136
+LI+H H DH +LP F K + T T+ I ++LTD +K+ + + ED LFD
Sbjct: 280 ILISHAHQDHIGALPTF-HKMFPACPMICTVGTRQIADVMLTDCLKIQQHN-EDFQELFD 337
Query: 137 EQDINRSMDKIEV----LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
E D+N+++ +++ +DF + G+K AGH+LGAA + +LYTGDY
Sbjct: 338 ENDLNQTIFQLQTKPVGVDFE---PLPGLKVRFIHAGHILGAACIYIRYGERSLLYTGDY 394
Query: 193 SREEDR---HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
+ R LR A+LP+ D+ I ESTYG H R +E+ + +S+GG VL
Sbjct: 395 NTSNSRTTDGLRLADLPE--ADMLITESTYGADNHPNRKTQEQELLKAVAEVVSKGGNVL 452
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFH--NIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
IPAFALGRAQE++L + FH NIP+Y L + V+ I + I+N
Sbjct: 453 IPAFALGRAQEIILAI----RTSALFHKLNIPVYVDG-LVRAVTDVFIENINLLPASIQN 507
Query: 308 QFANSNPF----KFKHISPLNSIDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKK 361
S PF I P+ + + PSV++AS G L G S
Sbjct: 508 FALQSEPFFNPDSHPPIIPIAHPKERPLAIAKPSVIIASSGMLSGGASVYYATTLLERDN 567
Query: 362 NACVIPGYVVEGTLAKTI--ISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLK 419
A I GY E + + + + + E+ N + + + S HAD + +
Sbjct: 568 AAVFISGYTDEESPGRFLQGLQQGDEIEFNNKKLV-VKADIRRFNLSGHADKVGLTQVIN 626
Query: 420 ELMPPNIILVHGES---HEMGR 438
+ P ++IL+HG HE+ R
Sbjct: 627 RVNPKHLILIHGSMNALHELSR 648
>gi|309782661|ref|ZP_07677382.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|404397356|ref|ZP_10989147.1| hypothetical protein HMPREF0989_02869 [Ralstonia sp. 5_2_56FAA]
gi|308918439|gb|EFP64115.1| metallo-beta-lactamase family protein [Ralstonia sp. 5_7_47FAA]
gi|348614037|gb|EGY63600.1| hypothetical protein HMPREF0989_02869 [Ralstonia sp. 5_2_56FAA]
Length = 454
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 220/457 (48%), Gaps = 31/457 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE--IDPSAIDVLLITHFHL 86
LGA + V S + G+ ++ DCG+ Y + L +D+ ++P ID +++TH H+
Sbjct: 6 LGATDTVTGSKYVLETGGRRVMVDCGLFQGYKSLR-LRNWDKLAVNPHHIDAVVLTHAHI 64
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------------- 133
DH+ LP L + F G V+ T T + +LL D ++++ +
Sbjct: 65 DHSGYLP-LLVRNGFHGPVYCTKGTAELCNILLPDSARLAQEDAQYANAEGFSRHHPALP 123
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
L+DE+D R++ ++ + + + V G++ + AGH++GAA + G R++++GD
Sbjct: 124 LYDEKDAARALRRLHPVGYGERFSVAEGVEAEFHRAGHIIGAATATLLTEGRRIVFSGDL 183
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R+ D +R E P D ++ESTYG ++H P V+ TI QGG +LIPA
Sbjct: 184 GRQVDPVMRPPE-PIAEADTLLVESTYGDRVH-PAGDPLDALERVVQRTIGQGGTLLIPA 241
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN-ERIRNQFAN 311
FA+GR QELL L H ++PIY SP+A+ V+ +I ++ E Q A
Sbjct: 242 FAVGRTQELLYCLYMLIREH-RIPHVPIYLDSPMAELATGVFAHHIDDLHIEAADCQAAC 300
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+ + SP S +D P +++A+ G G + K+NA ++ G+
Sbjct: 301 ALAIPVQ--SPEQSRHLGNDRAPKIILAASGMATGGRVLHHLKNFGGGKRNAILMSGFQA 358
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM--PPNIIL 428
GT +++ + + + +G + V I + SAHAD + T+L+ P +
Sbjct: 359 AGTRGAALLAGQRALRV-HGREVAIRASVEQIQNLSAHADANELMTWLRGFTRPPQQTFI 417
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
VHGE L+ ++ EL + P+ +S E+
Sbjct: 418 VHGEPAASDALRQRIEHEL---QWSVCMPEYRESYEL 451
>gi|433638879|ref|YP_007284639.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halovivax ruber XH-70]
gi|433290683|gb|AGB16506.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halovivax ruber XH-70]
Length = 645
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/468 (27%), Positives = 223/468 (47%), Gaps = 41/468 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCSREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYESEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E+ T+VI+ T +GG+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQADSERNLTEVINETYERGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMREG-DIPTMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D P +++++ G + G D +
Sbjct: 477 ENPFLAEQFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLM------NG----LTAPLNMQVHYI-SFSAHADYAQTST 416
GY +GTL + I + E+ + NG T LNM V + FS HAD A
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPVSDIGRHDNGGGGRGTLSLNMNVETVDGFSGHADRAGLEN 596
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F+K + P ++ VHG+ + L + L D N + PKN ++
Sbjct: 597 FVKTMNPRPEKVLCVHGDERSVQDLSSAL---YHDYNMRTFAPKNLET 641
>gi|11498093|ref|NP_069318.1| mRNA 3'-end processing factor [Archaeoglobus fulgidus DSM 4304]
gi|2650146|gb|AAB90756.1| mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus DSM
4304]
Length = 632
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/430 (28%), Positives = 216/430 (50%), Gaps = 29/430 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP-SAIDVLLIT 82
+T LG EVGRSC + IL DCG++ S +++ PY E+ P A+D ++IT
Sbjct: 180 VTFLGGSREVGRSCYLLQTPESRILIDCGVN--VSNLSSTPYLYVPEVQPLDALDAVVIT 237
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH +P L K ++G +++T T+ + LL D+++V+ + + I
Sbjct: 238 HAHLDHCGLVP-LLYKFGYRGPIYLTPPTRDLMVLLQLDFLEVAGREGTNPPYSSNLIRE 296
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRH 199
++ LD+ +++ ++ Y AGH+LG+A+ F + + +TGD+ E+ R
Sbjct: 297 ALKHTITLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGHYNIAFTGDFKFEKTRL 356
Query: 200 L-RAA-ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
RAA P+ + ++E+TYG R E+R +VI+ T+ +GG+VLIP FA+
Sbjct: 357 FDRAATNFPRL--EALVMEATYGGPNDFQPSRKEAEERLIEVINRTLDRGGKVLIPTFAV 414
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ--FANSN 313
GR+QE++++L+E Y + + A++ Y +N ++R+ + N
Sbjct: 415 GRSQEVMIVLEEAMREKRLRET--YVYLDGMIYEATAIHTAYPEYLNAQLRDLIFYHGIN 472
Query: 314 PFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
PF ++ ++S SD PS+++A+ G L G + F D++N V GY
Sbjct: 473 PFISENFVRVDSSSKREEVISDPSPSIIIATSGMLNGGPVMEYFRHLAEDERNTIVFVGY 532
Query: 370 VVEGTLAKTIISEPKEVTL-MNGLTAPLNMQVHYI---SFSAHADYAQTSTFLKEL--MP 423
EGTL + I KEV ++G + +++ FS H+D Q +++ L P
Sbjct: 533 QAEGTLGRKIQKGWKEVPFPVDGRREVVEVKMEVETVDGFSGHSDRKQLMNYIRYLNSKP 592
Query: 424 PNIILVHGES 433
+ VHG+
Sbjct: 593 EKVATVHGDE 602
>gi|307353378|ref|YP_003894429.1| KH-domain/beta-lactamase-domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156611|gb|ADN35991.1| KH-domain/beta-lactamase-domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 629
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 123/458 (26%), Positives = 220/458 (48%), Gaps = 28/458 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHF 84
+T LG EVGR+ +S IL DCG P + Y EI P + +D +++TH
Sbjct: 181 VTTLGCCREVGRAAFLLSTPESKILIDCGEKPGSTEGVPYLYVPEIYPLNTLDAVVLTHA 240
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH A +P L + F+G V+ T AT+ + +L DY++V + +++ +
Sbjct: 241 HLDHCALVP-LLYRYGFEGPVYSTPATRDLAVMLQLDYLEVVSNEANQAPYTSKEVQEYL 299
Query: 145 DKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLR 201
K VL++ ++ IK + AGH+LG+A+ F V + ++GD++ + R
Sbjct: 300 KKSIVLNYGSVTDIAPDIKLTYHNAGHILGSAIAHFHVGDGLYNIAFSGDFNYGKTRLFG 359
Query: 202 AA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
A + P+ + +ESTYG + + E++ + +++TI +GG+V+IPAFA+GR
Sbjct: 360 PATSQFPRL--ETIFVESTYGGANDIQPSKKDAEEKLYEAVNTTIKRGGKVIIPAFAVGR 417
Query: 258 AQELLLILDEYWSNHPEFHNIP--IYYASPLAKKCMAVYQTYILSMNERIRNQFANS--N 313
+QE++L L+E IP Y + K+ A++ TY +N +R Q N
Sbjct: 418 SQEVMLTLEEGM----RLDKIPKVKVYLDGMIKEATAIHTTYPEYLNPELRKQIFQDGMN 473
Query: 314 PFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF F + ++ PS+++ + G L G + + +D+KN + GY
Sbjct: 474 PFLSDCFVQVDSPAIRENVIGGEPSIIITTSGMLSGGPVMEYLNGLAADEKNMLIFVGYQ 533
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPPNII 427
+GT+ + I KE+ + + +N+++ I FS H+D Q ++ L P +
Sbjct: 534 ADGTMGRRIQKGWKEIPMGRRGSIVINLEIQTIDGFSGHSDRNQLMRYINHLNPRPEKVF 593
Query: 428 LVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+HG+ L + + + P+N ++ M
Sbjct: 594 TIHGDEKSAIDLASSIYKRF---RIETHAPRNLETYRM 628
>gi|150388612|ref|YP_001318661.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus
metalliredigens QYMF]
gi|149948474|gb|ABR47002.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus
metalliredigens QYMF]
Length = 543
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/461 (28%), Positives = 220/461 (47%), Gaps = 37/461 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHF 84
I GA V S V +S IL DCG+ + + AL Y + DP ID LL++H
Sbjct: 3 IQFFGAAKVVTGSNVLISTDKHKILLDCGMFQGSNELEALNYEPFQYDPKEIDFLLLSHT 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YVKVSKVSVEDM--------- 133
H+DH+ +P + K F G++F T ATK + +++L D +++ S V E+
Sbjct: 63 HIDHSGRIPKLV-KEGFNGKIFCTKATKDLSEIMLVDSGHIQQSDVEWENRKRKRSGKPP 121
Query: 134 ---LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA----GVR 185
L+ +D S+ + + ++Q + +N I AGHVLG+++ + I V+
Sbjct: 122 IKPLYTVEDALSSLRYFDSVLYNQKINLNESISVRFRDAGHVLGSSIIELWITEEKDTVK 181
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
++++GD + +R E+ D I+ESTYG ++H+ R I+ T+ +G
Sbjct: 182 IVFSGDLGMKNKPLIRDPEIID-DADYLILESTYGNRVHENVEQRMDELMSTINKTVLRG 240
Query: 246 GRVLIPAFALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMN 302
G V+IP+FA+GR QEL+ L +Y+ + E F IPIY SP+A V++ +
Sbjct: 241 GTVIIPSFAVGRTQELIYELSQYYKANNELDAFMRIPIYIDSPMAISATEVFKKNSYCFD 300
Query: 303 ERIRNQ-FANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLF--DI 355
+ + SNP F+++ + + + P V++++ G G R ++
Sbjct: 301 DETKKLILGGSNPLDFENLHFVRDHKESMRLNESNYPKVIISASGMCTGGRIRHHLKHNL 360
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
W ++ N+ + GY +GTL + + K+V L+ A L+ FS HAD
Sbjct: 361 WKAN--NSLIFVGYQAQGTLGRILKDGAKKVKLLGEEIAVLSEIYSIEGFSGHADQTDLI 418
Query: 416 TFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKI 454
+L P + LVHGE + L + L+ E D T I
Sbjct: 419 EWLGHFKKKPKRVFLVHGEDTSLDNL-SSLIKEKFDIPTII 458
>gi|20092670|ref|NP_618745.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
gi|19917954|gb|AAM07225.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
Length = 637
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 128/425 (30%), Positives = 213/425 (50%), Gaps = 30/425 (7%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S IL DCG++ M Y E+ P + ID
Sbjct: 178 DQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH +P L K ++G V+ T T+ + LL DY+ V+ + + ++
Sbjct: 238 VIVTHAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESG 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ +++ LD+ + ++ IK + AGH+LG+A+ F + V++TGDY E
Sbjct: 297 MVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYE 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + I E+TYG QP EK V+ +T+ +GG LIP
Sbjct: 357 KTRLFDPAVNKFPRV--ETVISEATYGNSNAFQPALKDAEKHLQMVVKNTVERGGIALIP 414
Query: 252 AFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
AFA+GR+QE++++L+E PE +P+Y + + A++ T+ +N +R
Sbjct: 415 AFAVGRSQEVMIVLEESIRKGLIPE---VPVYLDG-MIWEATAIHATHPEYLNNDLRKLI 470
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF + P++S + + P V++++ G + G F + D +N
Sbjct: 471 FQKGQNPFLSECFKPVDSHETRQKIIQNPHPCVILSTSGMMNGGPVMDYFRTFAEDPRNT 530
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFL 418
V GY +GT+ + I KE+ + NG T L NM+V + FS H+D Q ++
Sbjct: 531 LVFVGYQADGTVGRRIQKGWKEIPMTGKNGSTEILKMNMEVQVVDGFSGHSDRRQLMEYI 590
Query: 419 KELMP 423
K + P
Sbjct: 591 KRMQP 595
>gi|452943963|ref|YP_007500128.1| RNA-metabolising metallo-beta-lactamase [Hydrogenobaculum sp. HO]
gi|452882381|gb|AGG15085.1| RNA-metabolising metallo-beta-lactamase [Hydrogenobaculum sp. HO]
Length = 451
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 122/441 (27%), Positives = 216/441 (48%), Gaps = 39/441 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLLITHFHLD 87
GA V S + K IL DCG+ + +E+ DP +D +L+TH H+D
Sbjct: 7 GAAKTVTGSAHMLILDDKKILIDCGLFQGVDEEKS----EELGFDPKEVDAVLLTHAHID 62
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV------------SKVSVEDM-- 133
H LP L K FKG+++ T+ T + +L+L D KV + S+++M
Sbjct: 63 HCGRLP-MLVKNGFKGKIYCTNPTYELSRLMLLDTAKVMLENYKSHMRKFQRGSIKEMPL 121
Query: 134 --LFDEQDINRSMDKIE-VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+DE D+ +++ E + +++T +V G K AGH+LG+ + ++ R++++G
Sbjct: 122 EPLYDEDDVFEALEHFEPIFSYNKTYDVLGAKVTPKDAGHILGSCFYEIEYKDKRIVFSG 181
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
D + +R LP ++ +ESTYG +LH+ + ++ ++I +TI G VLI
Sbjct: 182 DLGNKGKPIVRDFSLPS-KANVVYVESTYGDRLHKSFDQSKEELKEIIKNTIKHGN-VLI 239
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P++AL R Q++L +L E++ I+ SPLA V+ + +
Sbjct: 240 PSYALERTQDILYVLREFYEE-GSLPKCKIFLDSPLATGVTKVFLRNPEYFRKETYDIMQ 298
Query: 311 NSNPFKFKHISPLNSIDD---FSDVGPSVVMASPGGLQSGLSRQLFDIW--CSDKKNACV 365
+PF +++ + +++ +D+ ++ + G+ SG R L I ++NA V
Sbjct: 299 KEDPFSLPYLTMVRDVEESKQINDIQEGAIIIAGSGMLSG-GRILHHIRHHAYKEQNAIV 357
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS---FSAHADYAQTSTFLKELM 422
GY GTL + I+ + V +M P+N++ + FS+HAD ++ ++
Sbjct: 358 FVGYQPHGTLGRRILEKQNPVFVMG---EPINIRAKIYTVNGFSSHADQSELIEWVNAAN 414
Query: 423 PPNIILVHGESHEMGRLKTKL 443
P I L+HGE +M LK KL
Sbjct: 415 PEKICLIHGEEDKMLVLKDKL 435
>gi|206900110|ref|YP_002250251.1| cleavage and polyadenylation specificity factor [Dictyoglomus
thermophilum H-6-12]
gi|206739213|gb|ACI18271.1| cleavage and polyadenylation specificity factor [Dictyoglomus
thermophilum H-6-12]
Length = 515
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/464 (28%), Positives = 222/464 (47%), Gaps = 37/464 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFDEIDPSAIDVLLITHF 84
IT GA EV SC Y+ L DCGI S P+ DP I +++TH
Sbjct: 3 ITFYGAAGEVTGSC-YLLENNFKYLVDCGIFQGKSERENESPFL--FDPKEIKAVILTHA 59
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----------- 133
HLDH+ +P + K FKG+++ T+ T + ++L D VK+ K VE +
Sbjct: 60 HLDHSGRIPKLV-KEGFKGKIYATYPTIELCEILWLDTVKLMKEEVERINRKNLRSGKPL 118
Query: 134 ---LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ E+++ +M E + + + V+++ IK + H+LGA+ + G +++++G
Sbjct: 119 VEPLYTEKEVEMAMKLFEPVPYDEVVDLSDIKIRFRDSAHILGASSLELWSDGTKIVFSG 178
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
D + + + + D IIESTYG +LH+ F V+ I G++LI
Sbjct: 179 DIGPQNNVMEGQPSIIE-GADYVIIESTYGDRLHKSLEETRSEFESVVLDAIKSQGKILI 237
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P+F + RAQ ++ L +P +PI++ SP+ KK VY+ + ++ I+ F
Sbjct: 238 PSFVVDRAQRVMYELMLLTYKYPFLSKVPIFFDSPMGKKVTEVYEKHSNLLSGEIQKYFL 297
Query: 311 NS-NPFKFKHISPLNSIDD---FSDVGPSVVMASPGGLQSG--LSRQLFDIWCSDKKNAC 364
NPF+ K++ L + D+ +++ +++A G G L ++W K+N
Sbjct: 298 EGINPFELKNLRYLVTPDESKSINELDTGIIIAGSGMCTGGRILHHLKHNLW---KENTH 354
Query: 365 VI-PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKELM 422
VI GY EGTL + I+ K V +M G + ++H I+ FSAHAD + + +
Sbjct: 355 VIFVGYQAEGTLGRRIVDGEKTVHIM-GEEITVRAKIHTINGFSAHADQSDLVKWTEYFK 413
Query: 423 -PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P ++VHGE L L + + I P QS+++
Sbjct: 414 NDPIFVIVHGEPKASQALSQILQLK----GKRTIIPSYAQSLDL 453
>gi|386002906|ref|YP_005921205.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
gi|357210962|gb|AET65582.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
Length = 635
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 130/433 (30%), Positives = 214/433 (49%), Gaps = 28/433 (6%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF--DEIDP-SAID 77
DQ + IT LG EVGRSC+ +S I+ DCG++ S +A PY E P + ID
Sbjct: 178 DQWVRITTLGGCREVGRSCMLLSTPESKIIVDCGVNVG-SDDSATPYLYVPEAYPLNQID 236
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDHA +P L K ++G ++ T T+ ++ LL DY+ ++ + M ++
Sbjct: 237 AVVLTHAHLDHAGLVP-MLYKYGYEGPIYCTPPTRDLFVLLQLDYIDIAGREGKRMPYES 295
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSR 194
I ++ L++ ++ K + AGH+LG+++ F V V +TGD+
Sbjct: 296 AMIREALKHTITLNYGDVTDIAPDTKLTMHNAGHILGSSICHFHVGDGLYNVAFTGDFKF 355
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYG-VQLHQP-RNIREKRFTDVIHSTISQGGRVLI 250
E+ R A P+ + ++E+TYG QP R E R V+ TI +GG+V+I
Sbjct: 356 EKTRLFDPAVHTFPRL--ETLVMEATYGGSNSTQPSRKEAEGRLLKVVRDTIKRGGKVII 413
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
PAFA+GR+QE+++ L+E I +Y + + A++ TY +N +R+
Sbjct: 414 PAFAVGRSQEVMIALEEAIRKK-SLEEISVYLDG-MIYEATAIHTTYPEYLNNELRDLIF 471
Query: 311 NS--NPFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ NPF F + + D P VV+A+ G + G + D++N V
Sbjct: 472 HKGINPFLSECFVQVETSSQRSKIVDGDPCVVLATSGMMNGGPILEYLKALGPDERNTLV 531
Query: 366 IPGYVVEGTLAKTIISEPKEVTLM---NGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL 421
I GY EGTL + I E+ L T +N++V + FS H+D Q +++ +
Sbjct: 532 IVGYQAEGTLGRRIQKGWNEIPLSAEGKTQTVKINLEVVTVDGFSGHSDRNQLMDYVRRV 591
Query: 422 --MPPNIILVHGE 432
P +I HG+
Sbjct: 592 YPKPSRVITNHGD 604
>gi|217966881|ref|YP_002352387.1| beta-lactamase domain-containing protein [Dictyoglomus turgidum DSM
6724]
gi|217335980|gb|ACK41773.1| beta-lactamase domain protein [Dictyoglomus turgidum DSM 6724]
Length = 515
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 133/466 (28%), Positives = 225/466 (48%), Gaps = 41/466 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFDEIDPSAIDVLLITHF 84
IT GA EV SC Y+ L DCGI S P+ DP+ I +++TH
Sbjct: 3 ITFYGAAGEVTGSC-YLLENNFKYLVDCGIFQGRSEKENENPFL--FDPTEIKAVILTHA 59
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM----------- 133
HLDH+ +P + K FKGR++ T+ T + ++L D VK+ K E +
Sbjct: 60 HLDHSGRIPKLV-KEGFKGRIYATYPTIELCEILWLDTVKLMKEETERINRKNLRSGKPL 118
Query: 134 ---LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L+ E+++ +M E + + + V+++ IK + H+LGA+ + +++++G
Sbjct: 119 VEPLYTEKEVEMAMKLFEPVPYDEMVDLSDIKIRFRDSAHILGASSLELWSNDTKIVFSG 178
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
D + + + + D +IESTYG +LH+ F V+ I+ G++LI
Sbjct: 179 DIGPQNNVMEGRPSIIE-DADYVVIESTYGDRLHKTLEETRAEFEKVVLDAINSQGKILI 237
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P+F + RAQ ++ L +P F IPI++ SP+ KK AVY+ + ++ I+ F
Sbjct: 238 PSFVVDRAQRVMYELMLLSYKYPFFSKIPIFFDSPMGKKVTAVYEKHSNLLSGEIQKYFL 297
Query: 311 NS-NPFKFKHISPLNSIDD---FSDVGPSVVMASPGGLQSG--LSRQLFDIWCSDKKNAC 364
NPF+ K++ L + D+ +++ +++A G G L ++W K+N
Sbjct: 298 EGINPFELKNLRYLTTPDESKSINELDTGIIIAGSGMCTGGRILHHLKHNLW---KENTH 354
Query: 365 VI-PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYA---QTSTFLK 419
VI GY +GTL + I+ K V +M G + ++H I+ FSAHAD + + + K
Sbjct: 355 VIFVGYQAQGTLGRRIVDGEKVVHVM-GEEITVRAKIHTINGFSAHADQKDLIKWTEYFK 413
Query: 420 ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P ++VHGE L L + K I P QS+++
Sbjct: 414 N--DPIFLIVHGEPQASQALSQLLQLK----GRKTIVPSYTQSLDL 453
>gi|352682156|ref|YP_004892680.1| mRNA 3-end processing factor [Thermoproteus tenax Kra 1]
gi|350274955|emb|CCC81601.1| mRNA 3-end processing factor [Thermoproteus tenax Kra 1]
Length = 424
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/443 (28%), Positives = 213/443 (48%), Gaps = 34/443 (7%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITH 83
+II LG EVGR+ V + +ILFD G++ G P + P + ++++H
Sbjct: 1 MIIKFLGGAGEVGRAAVLVKTSSGSILFDYGVNFDSQGRPVFP--GHVRPKDLIAVVLSH 58
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+ +LP + K V+ T T + ++ TD +K+S + + +++ +
Sbjct: 59 AHLDHSGALPSLY--VSVKPPVYATPLTMELSDVMYTDMIKLSGYYLP---YTHEEVKAT 113
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRA 202
MD L + + VE+ I Y AGHV G+A+ +++ G V++TGD++ + L+
Sbjct: 114 MDSAIPLTYGEPVELAPDIILTVYNAGHVPGSAISVLEAEGRTVVFTGDFNLRDTALLKG 173
Query: 203 AE---LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259
++ LP+ PD I+E+TY + H PR E F + + GG VLIP+FALGRAQ
Sbjct: 174 SDIYNLPK-DPDFVIMEATYAMADHPPRETLESEFVSAVKEVLEGGGTVLIPSFALGRAQ 232
Query: 260 ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE----RIRNQFANSNPF 315
E+LL L +Y +I Y LA++ + Y +N+ R ++A P
Sbjct: 233 EILLTLAKY--------DIGPIYVDGLARQVNVIVGKYPHLLNDYNLYRKAMEYAVEIPN 284
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
+ + + PSV+++ G L+ G S F +D KNA ++P + T
Sbjct: 285 AYVRKKAVGA-------EPSVIVSPAGMLKGGASLYYFKRLAADPKNAVILPSFQAPNTP 337
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESH 434
I+S K L++G T + +V + FSAH+ + F + + IIL H E
Sbjct: 338 GFDILS--KGEALVDGTTIKVRARVEWFDFSAHSGRRELIEFAQRFSVNTRIILFHAEPQ 395
Query: 435 EMGRLKTKLMTELADCNTKIITP 457
+L +++ + D +TP
Sbjct: 396 ASLQLASEMALKGFDNIYVPLTP 418
>gi|313680726|ref|YP_004058465.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
gi|313153441|gb|ADR37292.1| RNA-metabolising metallo-beta-lactamase [Oceanithermus profundus
DSM 14977]
Length = 447
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/444 (27%), Positives = 210/444 (47%), Gaps = 27/444 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLLITH 83
+T GA V SC + ++G +L DCG+ Y G +D DP A+D ++++H
Sbjct: 3 LTTWGACGTVTGSCHLLEHQGFKLLLDCGM---YQGEPRSDNYDPFGFDPRAVDAVVLSH 59
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK----------VSVEDM 133
HLDH +P L + F+GRV+ T T + + +L D +K+ K + V ++
Sbjct: 60 AHLDHVGRIPR-LYRLGFEGRVYATAPTLKLIRPILEDALKLMKEDIKRARRKGLPVPEL 118
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L+DE D++ + + + + ++ +V + AGH+ G+A V G ++++GD
Sbjct: 119 LWDEADVHALLGRSKPVPYYSPRKVGPFRITLRNAGHLPGSAFVEVQAGGRTLVFSGDLG 178
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
L + P+ + D+ + ESTYG + H+P F +V+ T+ GG+V++P+F
Sbjct: 179 NRRKETLPDPDYPRVA-DLVLSESTYGDRPHRPFQATLVEFAEVLAQTLDGGGKVIVPSF 237
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS- 312
AL RAQE+L + + + ++P+Y SPL + +Y + + +++ +
Sbjct: 238 ALERAQEILFYIRRFEAEG-AIPSVPVYVDSPLTTRISEIYGQIQEAFSPLVQSFYRRGL 296
Query: 313 NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
+PF + + S+D+ + GP++++A G L G D +NA V G
Sbjct: 297 DPFAPQKLRYTQSVDESKRLNFLEGPAIIIAGSGMLSGGRILHHLRHQLPDARNALVFVG 356
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNII 427
Y G L II EV + +G + +V+ + FS HA + +L I+
Sbjct: 357 YQPRGGLGHRIIEGADEVRI-HGHDVRVRAKVYSLGGFSGHAGRDELLDWLAAER--RIV 413
Query: 428 LVHGESHEMGRLKTKLMTELADCN 451
LVHGE RL L A
Sbjct: 414 LVHGEDPARVRLARALRARGAKVT 437
>gi|397666698|ref|YP_006508235.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
gi|395130109|emb|CCD08342.1| putative mRNA Cleavage and polyadenylation specificity factor
[Legionella pneumophila subsp. pneumophila]
Length = 453
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/469 (29%), Positives = 222/469 (47%), Gaps = 46/469 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A LP IDP ID ++
Sbjct: 3 LTFLGATETVTGSKYLLTVGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SK 127
ITH H+DH LP L K F+G+++ T TKA+ +LL D + SK
Sbjct: 59 ITHAHIDHTGYLP-LLVKNGFQGKIYATPGTKALCSILLPDSGHLQEEEARLANKYGFSK 117
Query: 128 VSVEDMLFDEQDINRSMDKIEVLDF---HQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
L+ E++ + ++ E +DF HQ + F + AGH++GAAM +
Sbjct: 118 HQPALPLYTEKEAHTALQYFETIDFDTPHQLF--HDFSFVYHRAGHIVGAAMVKIKTQKG 175
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
+++TGD R D ++A Q + D ++ESTYG +LH + + VI+ T+ +
Sbjct: 176 SIVFTGDIGRPYDPVMKAPAFIQET-DYLVMESTYGDRLHDATDPL-PQMAQVINQTVKR 233
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG V+IPAFA+GRAQ LL + E ++P++ SP MA+ T++L +
Sbjct: 234 GGSVVIPAFAVGRAQSLLYFIYELKRQGQITKDLPVFLDSP-----MAIDATHLLCTYKE 288
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ A + +N+ ++ ++ P +++A+ G Q G + +
Sbjct: 289 DHHLTAEQCRGLCHVATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKAFAPNP 348
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLK 419
KN + G+ GT I++ K+V + +G P+ +V + S SAHADY + +L
Sbjct: 349 KNTLLFTGFQAGGTRGARIVNGEKQVKI-HGSFIPIQAKVVVMSSTSAHADYPELLEWLT 407
Query: 420 ELM--PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
L P + + HGE H LK K+ +L T P Q+ E++
Sbjct: 408 HLTNPPKKVFITHGEPHSAQSLKQKIEKQLGFSCT---IPSYLQTEELW 453
>gi|431802334|ref|YP_007229237.1| metallo-beta-lactamase [Pseudomonas putida HB3267]
gi|430793099|gb|AGA73294.1| metallo-beta-lactamase [Pseudomonas putida HB3267]
Length = 455
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 222/446 (49%), Gaps = 34/446 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--AIDVLLITH 83
+T LG V S ++++ +L DCG+ Y + L ++ + + A+D +++TH
Sbjct: 3 LTFLGGTGTVTGSKFLLTHESSRVLIDCGLFQGYKQLR-LRNWEPLSAALRALDAVVLTH 61
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV-------------SKVSV 130
HLDH+ LP L K + G ++ T AT A+ ++LL D ++ SK S
Sbjct: 62 AHLDHSGYLP-VLAKEGYTGPIYATPATCALAEILLLDSARLQEEQAEHANRHGYSKHSP 120
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQ-TVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ EQD R++ + ++ H T+ G++ TAGH+LGAA + + G ++++
Sbjct: 121 ARPLYTEQDAKRALALLRPVELHHPTMIAPGMELLLRTAGHILGAATVQIKVDGQTLVFS 180
Query: 190 GDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
GD R +D +RA EL + + D+ ++ESTYG + H P E+ T VI+ T+ + G L
Sbjct: 181 GDLGRPQDPIMRAPELIR-TADVLLVESTYGDRQH-PSESTEQFLTQVINQTLLRHGITL 238
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P+FA+GRAQ L+ L + + +IP+Y SP+A +YQ + +E
Sbjct: 239 VPSFAVGRAQLLMYYLYKLKRD-GLIPDIPVYLNSPMATDATTLYQQF---RSEHRLTLA 294
Query: 310 ANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
++ + HI + ++D+ + P+V++A+ G G + +N+ +
Sbjct: 295 ECADMCRDTHI--IRTVDESRHLDQLREPAVIIAASGMATGGRVLHHLKALAPNPRNSIL 352
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM-- 422
G+ GT I++ + V L +G P+ QVH + + SAH D + +L+
Sbjct: 353 FSGFQAGGTRGADIVAGARSVRL-HGEDVPIRAQVHAMDNLSAHVDADEIMEWLRGFARP 411
Query: 423 PPNIILVHGESHEMGRLKTKLMTELA 448
P ++HGE H L+ ++ EL
Sbjct: 412 PRQTYVIHGEPHAADTLRRRISIELG 437
>gi|448437483|ref|ZP_21587486.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
gi|445680702|gb|ELZ33144.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
Length = 497
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/458 (27%), Positives = 219/458 (47%), Gaps = 29/458 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-IDVLLITHF 84
+T LG EVGR+ +S IL DCG P G E +P A +D +++TH
Sbjct: 44 VTTLGCCREVGRASFILSTPESRILVDCGDKPGAEGEVPYLQIPEANPIADLDAVVLTHA 103
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSM 144
HLDH+A LP L K + G V+ T AT+ + LL DY+ V+ ++ + +
Sbjct: 104 HLDHSALLP-LLFKYGYDGPVYTTQATRDLMGLLQLDYLDVAAKEGRTPPYESAMVREEL 162
Query: 145 DKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLR 201
+D+ ++ IK + AGH+LG+A+ F V V+++GD + R
Sbjct: 163 KHTITVDYGNVTDIAPDIKLTLHNAGHILGSAVAHFHVGDGFHNVVFSGDIHHTDTRLFN 222
Query: 202 AA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
A + P+ I+ESTYG + + E++ T++I+ T Q G V+IPAFA+GR
Sbjct: 223 GASNDFPRVES--LIMESTYGRRNDYQTDQEDSERKVTELINDTYEQDGIVVIPAFAVGR 280
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPF 315
+QEL+L+L+E +PIY + ++ A++ Y + + +R + + NPF
Sbjct: 281 SQELMLVLEEAM-REDRLRTMPIYLDG-MIREATAIHTAYPEFLRDGLRQRILHDDENPF 338
Query: 316 ---KFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+F+ + + +D + P +++++ G + G ++ +D KN + GY
Sbjct: 339 LADQFQQVDGGQEMREDIAGGEPCIILSTSGMVTGGPIMSWLELLGNDPKNTLIFVGYQA 398
Query: 372 EGTLAKTIISEPKEVTLMNGLTAP----LNMQVHYIS-FSAHADYAQTSTFLKEL--MPP 424
+GTL + I S +E+ + + L V +S FS HAD F+ + P
Sbjct: 399 QGTLGRRIQSGRREIPFSDRGSRSEQLTLRFDVESVSGFSGHADRNGLEDFVGTMNPRPE 458
Query: 425 NIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
++ VHG+ + + L + N + +PKN ++
Sbjct: 459 RVLCVHGDESSTDQFSSGLYQKF---NIRTQSPKNMET 493
>gi|384107949|ref|ZP_10008846.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Treponema sp. JC4]
gi|383870333|gb|EID85936.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Treponema sp. JC4]
Length = 473
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 130/456 (28%), Positives = 218/456 (47%), Gaps = 50/456 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALP-----YFDEIDPSAIDVLLITH 83
LGA EV S + + I+ DCG A+ G FD D +D +++TH
Sbjct: 8 LGAAEEVTGSKHILQLDDRYIMIDCG---AFQGKRKESDEKNRNFD-FDVDDLDAVILTH 63
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM---------- 133
H DH LP L K ++G ++ T AT+ I L+L D ++ E +
Sbjct: 64 GHFDHCGLLP-VLAKRGYEGNIYATPATRDIANLVLMDSARIQARDAEFLAKQAAKKGEK 122
Query: 134 -----LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDI------ 181
L+ E+D ++I + +++ + V G++ + AGH+LG+A + +
Sbjct: 123 FKWKPLYSEEDCIAVANQIVGVSYNRRMPVAPGVQLEFFDAGHILGSAFASITVNPNKKD 182
Query: 182 --AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
R+LYTGD R+ +R L +PD +E+TYG +LHQ +I K V+
Sbjct: 183 PEKETRILYTGDIGRKCKPIIRNPALDMPAPDYIFMETTYGNKLHQDHDIAMKELIRVVR 242
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
+ + G+++IP+FA+ RAQEL+ L H +PIY SP+A +V++ +
Sbjct: 243 ESCQRKGKIIIPSFAIERAQELVYYLHRLIEQKKIPH-VPIYVDSPMAVNATSVFRVHPE 301
Query: 300 SMNERIRNQFA--NSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLF 353
+E + F + NPF F ++ SI++ + GP +++ + G ++G R L+
Sbjct: 302 CYDESVNEAFLKHHKNPFGFGDLTYTTSIEESKALNKKEGPMIIITADGMCEAG--RVLY 359
Query: 354 DIW--CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHAD 410
+ S+ +N +I GY+ E TL + I +EV ++ G + +V + +FSAHAD
Sbjct: 360 HLANDISNPRNTVMIVGYMAENTLGRKIRDGEEEVMIL-GDKYKVEAKVELMNAFSAHAD 418
Query: 411 YAQTSTFLKEL---MPPNIILVHGESHEMGRLKTKL 443
Y + + +LK + I LVHGE K L
Sbjct: 419 YGEMTEWLKGIDTSRLKKIFLVHGEKEAQEFFKNHL 454
>gi|254167850|ref|ZP_04874699.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|197623141|gb|EDY35707.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
Length = 410
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 217/441 (49%), Gaps = 47/441 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG EVG +YM +LFD G+ P S A P + +D L ITH HLDH
Sbjct: 7 LGGAEEVGSLGLYMQIGELRLLFDYGLTP--SKPPAYP----MHAPPVDSLFITHVHLDH 60
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ +P ++ ++ T T ++ L+L D +KV+ + + + ++++ ++D +
Sbjct: 61 SGMVPRI--AMEYEANIYATPPTNSVLPLMLNDTIKVANIEGFPIPYTKEEVENTVDGLI 118
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQ 207
+D+ +T+E+ + ++AGH+ G+AM+ +I R +L+TGD + + HL P
Sbjct: 119 DVDYGKTIELGSLDIIPHSAGHIPGSAMY--EIKDDRTILFTGDI-QTVNTHLVWGTKP- 174
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD- 266
D+ I+ESTY + H PR+ EK F I + GG+ ++PAFA+GR QE++LIL
Sbjct: 175 VKTDVLIMESTYAGREHPPRDEVEKNFLAKIEEIVDNGGKAIVPAFAVGRTQEIMLILAK 234
Query: 267 ---EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN--ERIRNQFANSNPFKFKHIS 321
E W + ++ +P Y+ S ++ RN+ HI
Sbjct: 235 TDFEVWVDGMGRFVTNLFLQNP----------QYLRSAKKLKKARNKM---------HIV 275
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
S D + V++A+ G L+ G + +D K+ ++ GY VEGT + ++
Sbjct: 276 RRRS-DRRKALKGEVIVATGGMLEGGPVLHYINHLKNDPKSGILLTGYQVEGTNGRLLMD 334
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
E + + G+ ++M + + FSAHA +++ F ++ P IIL+HG++ E
Sbjct: 335 E--GILELYGVKEKIDMDIDFFDFSAHAGHSELIEFAEKCSPERIILMHGDNRE------ 386
Query: 442 KLMTELADCNTKIITPKNCQS 462
L +L + ++I PKN +
Sbjct: 387 ALAKDLKNRGFEVIMPKNGED 407
>gi|395645476|ref|ZP_10433336.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
gi|395442216|gb|EJG06973.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
Length = 629
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 208/430 (48%), Gaps = 22/430 (5%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVL 79
DQ + +T LG EVGR+ ++ +L DCG P + Y EI P S++D +
Sbjct: 176 DQWVRVTTLGCCREVGRAAFLLTTPESRVLIDCGEKPGSTTSTPYLYVPEISPLSSLDAV 235
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
++TH HLDH A +P L K + G V+ T T+ + +L DY+ V K + +
Sbjct: 236 VLTHAHLDHCALVP-LLFKYGYDGPVYSTPPTRDLAAMLQLDYLDVVKKESGRQPYTSNE 294
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREE 196
+ + L++ ++ IK + AGH+LG+A+ F + + +TGD++ ++
Sbjct: 295 VKEYIKHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHLGDGLYNIAFTGDFNYQK 354
Query: 197 DRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R A P+ + +ESTYG L R E + D++ TI +GG+V+IPA
Sbjct: 355 TRLFSPAVSTFPRL--EALFMESTYGGANALQPAREDAEAKLYDIVTRTIERGGKVIIPA 412
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
FA+GR+QE++L L+E + + +Y + K+ A++ TY +N +RNQ
Sbjct: 413 FAVGRSQEVMLALEEGMRKE-KIPRVKVYLDG-MIKEATAIHTTYPEYLNADLRNQIFRD 470
Query: 313 --NPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF + ++S D V P V++ + G L G + D++N V
Sbjct: 471 GMNPFLAECFVQVDSSDLREKVIGGDPCVIVTTSGMLSGGPVMEYLYALAPDERNTLVFV 530
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM--PP 424
GY EGT + + +E+ + N T + + + + FS H+D Q F++ + P
Sbjct: 531 GYQAEGTFGRRLQKGWREIPVGNRETMVVKLDIDTVDGFSGHSDRKQLMGFIQHIQPRPE 590
Query: 425 NIILVHGESH 434
I +HG+ +
Sbjct: 591 KIFTIHGDEN 600
>gi|296243052|ref|YP_003650539.1| beta-lactamase domain-containing protein [Thermosphaera aggregans
DSM 11486]
gi|296095636|gb|ADG91587.1| beta-lactamase domain protein [Thermosphaera aggregans DSM 11486]
Length = 425
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/444 (28%), Positives = 211/444 (47%), Gaps = 39/444 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG G EVGR+ Y+ + +LFD G++ + LP + P +D ++I+H HLDH
Sbjct: 8 LGGGREVGRAA-YLLEGRERVLFDYGVNFDEKDLPQLPL--HVRPVDLDAVVISHAHLDH 64
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ PY T K +++ T T I +LL D++K++ +E +D + +
Sbjct: 65 VGAAPYLF--ITGKPKIYATRPTLDIARLLTIDFLKLNAAVIE---YDMLEFEKMYSSTV 119
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA-GVRVLYTGDYSREEDRHLRAAELPQ 207
+D+ ++VE G K AGH+LG+ M ++ + G ++LYTGD + L A+
Sbjct: 120 FVDYQESVE-QGFKLVFTNAGHILGSTMVYLETSTGEKILYTGDVNNISTWTLSGADFLP 178
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
D I+ESTYG + H R++ EKRF + + + +GG VLIPAF++GR+QEL+ +L
Sbjct: 179 VGVDTIIMESTYGGRNHPKRHLVEKRFVETVEEVVDKGGTVLIPAFSVGRSQELMTLLTS 238
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSID 327
E + IY + K +Y + +F K + +N +
Sbjct: 239 ------ELPYVDIYIDG-MVKDVSEIYLKH---------RKFLRDPGLFMKTVENVNFVT 282
Query: 328 DFSD-----VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISE 382
S+ P V++AS G L+ G S F + +NA ++ Y + ++ E
Sbjct: 283 KASERKKLVSKPCVIIASAGMLKGGPSVYYFKKIAENPRNAVLLVSYQAPASNGHKLLEE 342
Query: 383 PKEVTL-MNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP--PNIILVHGESHEMGRL 439
+ L +N + A +V + FS+HA + ++ N+IL+HG + L
Sbjct: 343 GRLPELELNEVKA----RVEWYDFSSHAGRDGLAEIAEKYKASLKNVILIHGGEDDQEVL 398
Query: 440 KTKLMTELADCNTKIITPKNCQSV 463
K +L L + KI+TPK V
Sbjct: 399 KKELAERLG-GDVKIVTPKTGDEV 421
>gi|254167864|ref|ZP_04874713.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289596605|ref|YP_003483301.1| RNA-metabolising metallo-beta-lactamase [Aciduliprofundum boonei
T469]
gi|197623155|gb|EDY35721.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289534392|gb|ADD08739.1| RNA-metabolising metallo-beta-lactamase [Aciduliprofundum boonei
T469]
Length = 410
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 123/441 (27%), Positives = 217/441 (49%), Gaps = 47/441 (10%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG EVG +YM +LFD G+ P S A P + +D L ITH HLDH
Sbjct: 7 LGGAEEVGSLGLYMQIGELRLLFDYGLTP--SKPPAYP----MHAPPVDSLFITHVHLDH 60
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ +P ++ ++ T T ++ L+L D +KV+ + + + ++++ ++D +
Sbjct: 61 SGMVPRI--AMEYEANIYATPPTNSVLPLMLNDTIKVANIEGFPIPYTKEEVENTVDGLI 118
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELPQ 207
+D+ +T+E+ + ++AGH+ G+AM+ +I R +L+TGD + + HL P
Sbjct: 119 DVDYGKTIELGSLDIIPHSAGHIPGSAMY--EIKDDRTILFTGDI-QTVNTHLVWGTKP- 174
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD- 266
D+ I+ESTY + H PR+ EK F I + GG+ ++PAFA+GR QE++LIL
Sbjct: 175 VKTDVLIMESTYAGREHPPRDKVEKNFLAKIEEIVDNGGKAIVPAFAVGRTQEIMLILAK 234
Query: 267 ---EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN--ERIRNQFANSNPFKFKHIS 321
E W + ++ +P Y+ S ++ RN+ HI
Sbjct: 235 TDFEVWVDGMGRFVTNLFLQNP----------QYLRSAKKLKKARNKM---------HIV 275
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
S D + V++A+ G L+ G + +D K+ ++ GY VEGT + ++
Sbjct: 276 RRRS-DRRKALKGEVIVATGGMLEGGPVLHYINHLKNDPKSGILLTGYQVEGTNGRLLMD 334
Query: 382 EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKT 441
E + + G+ ++M + + FSAHA +++ F ++ P IIL+HG++ E
Sbjct: 335 E--GILELYGVKEKIDMDIDFFDFSAHAGHSELIEFAEKCSPERIILMHGDNRE------ 386
Query: 442 KLMTELADCNTKIITPKNCQS 462
L +L + ++I PKN +
Sbjct: 387 ALAKDLRNRGFEVIMPKNGED 407
>gi|297588707|ref|ZP_06947350.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
gi|297574080|gb|EFH92801.1| metallo-beta-lactamase [Finegoldia magna ATCC 53516]
Length = 539
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 135/508 (26%), Positives = 242/508 (47%), Gaps = 61/508 (12%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGA EV SC + + + DCG+ + + D+ID + ++ +L+TH H
Sbjct: 3 ITFLGAAQEVTGSCYLVETEKHKFMVDCGLFQGSKELEQKNH-DDIDFNEVEFMLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS-- 143
+DH +P L K F+ ++ T ATK + +++L D K+ + VE ++ + RS
Sbjct: 62 IDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE---WENRKRQRSGK 117
Query: 144 ---------MDKIEVLD------FHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA----G 183
+D + + + + V++N I+ AGH+LG++ + I
Sbjct: 118 TLLTPLYTTIDAMSCISLFKGRFYDEVVKINEDIRVVFRDAGHMLGSSSLEIFITENGKT 177
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
+++++GD + L E+ D ++ESTYG ++H+P ++I S
Sbjct: 178 TKIIFSGDIGTSNNPILNNPEVLS-GCDYLVMESTYGNRIHEPYKESVHSLIEIIEKVSS 236
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFH---NIPIYYASPLAKKCMAVYQTYILS 300
+GG V+IP+FA+GR QE++ L+ Y+ + H +P+Y SP+A + +
Sbjct: 237 RGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAFMKNTDL 296
Query: 301 MNERIRNQFAN-SNPFKFKHISPLNSIDD---FSDVG-PSVVMASPGGLQSGLSRQLF-- 353
N++ ++ ++ N F+F+++ + +ID+ ++V P V+++S G +G R
Sbjct: 297 FNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNNVKFPRVIISSSGMATAGRVRHHLKH 356
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYA 412
++W D+KNA V GY EG+L + ++ EV L G T +N +++ + FS HAD
Sbjct: 357 NLW--DEKNAVVFVGYQAEGSLGRILLDGIDEVKLF-GETIKVNAEIYNLGGFSGHADQN 413
Query: 413 QTSTFLKEL--MPPNIILVHGESHEMGRLKTKLM--------------TELADCNTKIIT 456
F+ + P I + HGE+ L L TE D I
Sbjct: 414 NLMDFVDNMKVKPKKIFITHGENEGAETLSNLLKEKYNIEAVIPEIYSTEEFDAGNYNIE 473
Query: 457 PK---NCQSVEMYFNSEKMAKTIGRLAE 481
+ N ++ ++Y EK+ K I RL E
Sbjct: 474 QEISTNRENNDLYEELEKIKKKIDRLYE 501
>gi|154150928|ref|YP_001404546.1| beta-lactamase domain-containing protein [Methanoregula boonei 6A8]
gi|153999480|gb|ABS55903.1| beta-lactamase domain protein [Methanoregula boonei 6A8]
Length = 639
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 126/440 (28%), Positives = 215/440 (48%), Gaps = 27/440 (6%)
Query: 13 RDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID 72
+DAP R+ + +T LG EVGR+ ++ +L DCG P +G Y EI
Sbjct: 180 KDAP--RKDQWVRVTTLGCCREVGRAAFLLTTPDSRVLIDCGEKPDNAGGTPYLYVPEIH 237
Query: 73 PSA-IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE 131
P A +D +++TH HLDH A +P L K ++G V+ T T+ + +L DY+ V
Sbjct: 238 PLAQLDAVVLTHAHLDHCALIP-LLYKYGYEGPVYSTPPTRDLSAMLQLDYLDVINKEDR 296
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLY 188
+ + ++ + L++ ++ IK + AGH+LG+A+ F + + +
Sbjct: 297 KIPYSSNEVKTYIRHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHIGDGLYNIAF 356
Query: 189 TGDYSREEDRHLRAA--ELPQFSPDICIIESTY-GVQLHQP-RNIREKRFTDVIHSTISQ 244
TGD++ + R A + P+ + +ESTY G QP R+ E + + I+ +S+
Sbjct: 357 TGDFNYSKSRLFNPAINQFPRL--EALFMESTYGGSNDFQPARSDAELKLYETINKVLSR 414
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIP--IYYASPLAKKCMAVYQTYILSMN 302
GG+V+IPAFA+GR+QE++L L+E IP Y + ++ A++ TY +N
Sbjct: 415 GGKVIIPAFAVGRSQEVMLALEEGM----RLGKIPHVKIYLDGMIREATAIHTTYPEYLN 470
Query: 303 ERIRNQFANS--NPFK---FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWC 357
+RN NPF F+ + + + P V++++ G L G +
Sbjct: 471 NDLRNLIFREGMNPFLAECFQQVDSSELREKVINGDPCVIISTSGMLNGGPVMEYLLNLA 530
Query: 358 SDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTST 416
D+KNA V GY +GT + I +EV L T +N+++ I FS H+D Q
Sbjct: 531 EDEKNALVFVGYQADGTQGRRIQKGWREVPLGRKGTITINLEIDTIDGFSGHSDRRQLMN 590
Query: 417 FLKELM--PPNIILVHGESH 434
++ ++ P I +HG+ +
Sbjct: 591 YIGQIQPRPEKIFCIHGDEN 610
>gi|154253893|ref|YP_001414717.1| beta-lactamase domain-containing protein [Parvibaculum
lavamentivorans DS-1]
gi|154157843|gb|ABS65060.1| beta-lactamase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 452
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 121/448 (27%), Positives = 213/448 (47%), Gaps = 36/448 (8%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
L +T LG V S +++ IL DCG+ + L + ++P ID +++T
Sbjct: 2 LSLTSLGGAGTVTGSKHLITHGNTRILIDCGLFQGLKNLRELNWQRLAVEPKDIDAVVLT 61
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H HLDH LP + F+G++F T AT+ + +L+L D + + E
Sbjct: 62 HAHLDHCGYLPRLV-LDGFRGKIFSTSATRDVAELILLDSAWLQEKDAEFANRKGFSKHK 120
Query: 134 ----LFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
L+ +D R++ + + + HQ E+ G + +AGH+LGAA +DI G R+++
Sbjct: 121 PALPLYRVRDAERALLQFKPVPLHQETELPGNARLLLRSAGHILGAATVQIDIGGKRLVF 180
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
+GD R +D + E P + D IIESTYG + H + E D+I T +GG V
Sbjct: 181 SGDLGRYDDVVMPDPE-PVTAADYIIIESTYGNRRHDRSDAVEA-LGDIIERTTRRGGTV 238
Query: 249 LIPAFALGRAQELLLILDEYW--SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+IPAFA+GRAQ L+ L W +P+Y SP+A A+ + ++ +
Sbjct: 239 VIPAFAVGRAQSLIYDL---WLLRQRGRLRTVPVYLDSPMATSATALLHRHA-DDHKLAQ 294
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ F + F ++ + +++ + P V++++ G G + + +N
Sbjct: 295 HDFEAA----FSEVTYMRDVEESKALSANRYPKVIISASGMATGGRVLHHIEAFGGSHQN 350
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL 421
+ G+ GT + ++ +EV + +G P+ +V ++ SAHAD + +L
Sbjct: 351 TLLFSGFQAAGTRGRKLLEGAREVKI-HGRWMPIKAEVAELAMLSAHADSDELMRWLGGF 409
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTEL 447
P + +VHGES+ L+ ++ EL
Sbjct: 410 TRAPEGVFIVHGESNASEALRERIQREL 437
>gi|187926558|ref|YP_001892903.1| beta-lactamase [Ralstonia pickettii 12J]
gi|241666068|ref|YP_002984427.1| beta-lactamase [Ralstonia pickettii 12D]
gi|187728312|gb|ACD29476.1| beta-lactamase domain protein [Ralstonia pickettii 12J]
gi|240868095|gb|ACS65755.1| beta-lactamase domain protein [Ralstonia pickettii 12D]
Length = 454
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 127/457 (27%), Positives = 219/457 (47%), Gaps = 31/457 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE--IDPSAIDVLLITHFHL 86
LGA + V S + ++ DCG+ Y + L +D+ ++P ID +++TH H+
Sbjct: 6 LGATDTVTGSKYVLETGAHRVMVDCGLFQGYKSLR-LRNWDKLAVNPHHIDAVVLTHAHI 64
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------------- 133
DH+ LP L + F G V+ T T + +LL D ++++ +
Sbjct: 65 DHSGYLP-LLVRNGFHGPVYCTKGTAELCNILLPDSARLAQEDAQYANAEGFSRHHPALP 123
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
L+DE+D R++ ++ + + + V +G++ + AGH++GAA + G R++++GD
Sbjct: 124 LYDEKDAARALRRLHPVGYGERFSVADGVEAEFHRAGHIIGAATATLLTEGRRIVFSGDL 183
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R+ D +R E P D ++ESTYG ++H P V+ TI QGG +LIPA
Sbjct: 184 GRQVDPVMRPPE-PIAEADTLLVESTYGDRVH-PEGDPLDALEQVVQRTIGQGGTLLIPA 241
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN-ERIRNQFAN 311
FA+GR QELL L H ++PIY SP+A+ V+ +I ++ E Q A
Sbjct: 242 FAVGRTQELLYCLYMLIREH-RIPHVPIYLDSPMAELATGVFAHHIDDLHIEAADCQAAC 300
Query: 312 SNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVV 371
+ + SP S +D P +++A+ G G + K+NA ++ G+
Sbjct: 301 ALAIPVQ--SPEQSRHLGNDRAPKIILAASGMATGGRVLHHLKSFGGGKRNAILMSGFQA 358
Query: 372 EGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM--PPNIIL 428
GT +++ + + + +G + V I + SAHAD + T+L+ P +
Sbjct: 359 AGTRGAALLAGQRALRV-HGREVAIRASVEQIQNLSAHADANELMTWLRGFTRPPQQTFI 417
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
VHGE L+ ++ EL + P+ QS E+
Sbjct: 418 VHGEPAASDALRQRIEHEL---QWPVRMPEYRQSYEL 451
>gi|452208263|ref|YP_007488385.1| beta-lactamase domain protein [Natronomonas moolapensis 8.8.11]
gi|452084363|emb|CCQ37702.1| beta-lactamase domain protein [Natronomonas moolapensis 8.8.11]
Length = 639
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 126/462 (27%), Positives = 225/462 (48%), Gaps = 35/462 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-----EIDPSAIDVLL 80
IT LG EVGR+ ++ +L DCG P G +PY S ID ++
Sbjct: 184 ITTLGCCREVGRAAFILNTPETRVLIDCGDKPGAEG--EVPYLQVPEALGAGASKIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 242 LTHAHLDHSALVP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSAQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ +++ ++ +K + AGH+LG+A+ F V V ++GD ++
Sbjct: 301 REAIKHCIPIEYGDVTDIAPDLKLTFHNAGHILGSAVTHFHVGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI T ++GG+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVMESTYGGRNDYQTDQEDSEEKLKEVIRETTTEGGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E E +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMRKG-EIPEVPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + + +D GP +V+++ G ++ G + +++ V
Sbjct: 477 ENPFLADQFNHIDGGEDERQEVADGGPCIVLSTSGMVEGGPIMSWLTHVGGESESSLVFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGL----TAPLNMQVHYI-SFSAHADYAQTSTFLKEL- 421
GY +GTL + I + E+ + + T LNM V + FS HAD F++ +
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPMNDRSSSRGTLTLNMGVETVDGFSGHADRQGLMNFVRTMN 596
Query: 422 -MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P ++ VHG+ + L + L D N + PKN ++
Sbjct: 597 PRPEKVLCVHGDESSVQDLSSAL---YHDFNMRTFAPKNLET 635
>gi|118576728|ref|YP_876471.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
gi|118195249|gb|ABK78167.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
Length = 645
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 116/434 (26%), Positives = 213/434 (49%), Gaps = 24/434 (5%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFD--EIDPSAIDVL 79
++ +T LG +VGRSC+ +S +L DCG++P A + P D I +D +
Sbjct: 187 EISLTALGGFGQVGRSCMLLSTLDSKVLVDCGVNPGAAHPSESYPRLDWAGITLDDLDAV 246
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+I H HLDH LP L K ++G ++ T T + L+ D +KV+ ++ E+D
Sbjct: 247 VIGHAHLDHTGFLP-VLAKYGYRGPIYCTEPTLPMMNLIQLDAIKVATAQGRVPVYAERD 305
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREE 196
+ + M + L + +++ IK AGH+LG+A+ F + +Y+GD +
Sbjct: 306 VRQIMRQAITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGSGDHNFVYSGDIKFGK 365
Query: 197 DRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254
AA + +IESTYG + + R E F + ++ ++ GG+VLIP A
Sbjct: 366 SILFEAASWNFPRVETLLIESTYGAKEDIQPTRQEVESAFINAVNGALADGGKVLIPIPA 425
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANS 312
+GRAQE+++++D Y + E P++ + + A+++ + + ++ + +
Sbjct: 426 VGRAQEIMMVIDHYMKSG-EMAEAPVFTEG-MISEASAIHEAHPEYLARELKQKILETDD 483
Query: 313 NPFKFKHISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
NPF ++ + + D D P +++A+ G L+ G + F K+N +
Sbjct: 484 NPFDSEYFTNVEHADGRDEALRDGSPCIILATSGMLEGGPVLEYFKSIAPHKQNKILFVS 543
Query: 369 YVVEGTLAKTIISEPKEVTLMN--GLTAPLNMQVH---YISFSAHADYAQTSTFLKELMP 423
Y V GTL + ++ ++V LMN G +N++ FS H+DY Q + F+++L P
Sbjct: 544 YQVNGTLGRRVLDGARQVPLMNRGGKIEVVNIECRMEKLDGFSGHSDYNQLTGFVQKLRP 603
Query: 424 P--NIILVHGESHE 435
+++ HGE +
Sbjct: 604 KLRRVLVNHGERRK 617
>gi|373495498|ref|ZP_09586082.1| hypothetical protein HMPREF0380_01720 [Eubacterium infirmum F0142]
gi|371964681|gb|EHO82189.1| hypothetical protein HMPREF0380_01720 [Eubacterium infirmum F0142]
Length = 556
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 123/439 (28%), Positives = 213/439 (48%), Gaps = 43/439 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLDH 88
GA V SC ++ IL DCG AL Y +PS I+ ++++H H+DH
Sbjct: 7 GASTGVTGSCHLLTSGEHKILLDCGQFQGGKAQDALNYERFPFEPSEIECVVLSHAHIDH 66
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE--------------DML 134
LP L K F+G+++ T AT + ++L D + + E + L
Sbjct: 67 CGRLP-LLTKRGFEGKIYCTDATADLLSIMLKDSAYIHEKETEWKNRKAERAGRNQVEPL 125
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMV----DIAGVRVLYT 189
+ +D +++ + + + Q +E+N +K AGH+LG+A+ + D +++++
Sbjct: 126 YTIEDAEKALSLVSPILYDQQIEINPNMKIVFNDAGHILGSAITELWVTEDDKESKIVFS 185
Query: 190 GDYSREEDRHLRAAELPQF--SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
GD E LR P + D I+E+TYG ++H+ ++ ++I +T +GG
Sbjct: 186 GDLGMEGRPILRD---PTYIKKADYVIMETTYGNRIHKELGSGVEKLIEIILNTTRRGGN 242
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFH----NIPIYYASPLAKKCMAVYQTYILSMNE 303
V+IP+FA+GR QEL+ L+ ++ ++ EF I +Y SP+A +++ +E
Sbjct: 243 VVIPSFAVGRTQELIYELNRFYDSNNEFRKELDKIFVYVDSPMATTATEIFRRNAQVFDE 302
Query: 304 RIRNQ-FANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLF--DIW 356
R NP +FK++ S + D+ P V++++ G ++G R ++W
Sbjct: 303 ETREYILKGDNPLEFKNLKFTRSSKESQDLNFNKEPKVIISASGMCEAGRIRHHLKHNLW 362
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTS 415
+ KN+ V GY +GTL +++I K VTL G +N ++H + FS HAD
Sbjct: 363 --NPKNSIVFVGYQGQGTLGRSLIEGIKMVTLF-GEEIQVNAEIHNLEGFSGHADQNGLF 419
Query: 416 TFLKELM--PPNIILVHGE 432
+L P I LVHGE
Sbjct: 420 AWLAHFQQKPKEIFLVHGE 438
>gi|448414471|ref|ZP_21577540.1| mRNA 3-end processing factor-like protein [Halosarcina pallida JCM
14848]
gi|445682037|gb|ELZ34461.1| mRNA 3-end processing factor-like protein [Halosarcina pallida JCM
14848]
Length = 634
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 134/471 (28%), Positives = 227/471 (48%), Gaps = 38/471 (8%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDP-S 74
+ E + + +T LG EVGR+ +S IL DCG P G +PY E +P +
Sbjct: 172 THETEWVRVTTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLQAPEANPIA 229
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML 134
A+D +++TH HLDH+A LP L K + G V++T T+ + LL DY+ V+
Sbjct: 230 ALDAVVLTHAHLDHSALLP-LLFKYGYDGPVYLTQPTRDLMGLLQLDYLDVAAKEGRTPP 288
Query: 135 FDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGD 191
+ + + + +D+ ++ +K AGHVLG+A+ F + V+++GD
Sbjct: 289 YGSEMVREELRHTITVDYGDVTDIAPDVKLTFANAGHVLGSAVTHFHIGDGFHNVVFSGD 348
Query: 192 YSREEDRHLRAAELPQFSPDICIIESTYG----VQLHQPRNIREKRFTDVIHSTISQGGR 247
E+ R A + ++ESTYG Q Q R+ EK F ++I T GG+
Sbjct: 349 IHYEDTRLFNGASNDFPRAETLVMESTYGGRDDYQTDQ-RDSEEKLF-ELISETHEAGGK 406
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
V+IPAFA+GR+QEL+L+L+E S +P+Y + ++ A++ Y + + +R
Sbjct: 407 VVIPAFAVGRSQELMLVLEEAMSEGA-IPTMPVYLDG-MIREATAIHTAYPHFLRDELRQ 464
Query: 308 QF--ANSNPFKFKHISPLNSIDDF-----SDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ + NPF + ++ D D V++++ G + G ++ +
Sbjct: 465 RILHEDDNPFLAEQFQQVDGGHDMRERIARDGEQCVILSTSGMVTGGPIMSWLELLGGEP 524
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLM------NGLTAPLNMQVHYIS-FSAHADYAQ 413
+NA + GY +GTL + I S +E+ N LT L + V +S FS HAD A
Sbjct: 525 ENALMFVGYQAQGTLGRRIQSGRREIPFESRGRRNNELT--LRLSVASVSGFSGHADRAG 582
Query: 414 TSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F++ + P I+ VHG+ +L + L D + + P+N ++
Sbjct: 583 LEEFVRTMSPRPERILCVHGDESSTDQLSSGLY---QDLHVRTHAPRNLET 630
>gi|221064697|ref|ZP_03540802.1| beta-lactamase domain protein [Comamonas testosteroni KF-1]
gi|220709720|gb|EED65088.1| beta-lactamase domain protein [Comamonas testosteroni KF-1]
Length = 452
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/445 (27%), Positives = 211/445 (47%), Gaps = 30/445 (6%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
L +T LG V S +++ IL DCG+ + L + ++P ID +++T
Sbjct: 2 LSLTSLGGAGTVTGSKHLITHGNTRILIDCGLFQGLKNLRELNWQRLAVEPKDIDAVVLT 61
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H HLDH LP + F+G++F T AT+ + +L+L D + + +
Sbjct: 62 HAHLDHCGYLPRLV-LDGFRGKIFSTSATRDVAELILLDSAWLQEKDADFANRKGFSKHK 120
Query: 134 ----LFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
L+ +D R++ + + + HQ E+ G + +AGH+LGAA +DI G R+++
Sbjct: 121 PALPLYRVRDAERTLLQFKPVPLHQETELPGNARLLLRSAGHILGAATAQIDIGGKRLVF 180
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
+GD R +D + E P + D IIESTYG + H + E D+I T +GG V
Sbjct: 181 SGDLGRFDDMVMPDPE-PVTAADYIIIESTYGNRRHDRSDAVEA-LGDIIERTTRRGGTV 238
Query: 249 LIPAFALGRAQELLLILDEYW--SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+IPAFA+GRAQ L+ L W N+P+Y SP+A + + S + ++
Sbjct: 239 VIPAFAVGRAQSLIYDL---WLLRQRGRLRNVPVYLDSPMATNATVLLHRH--SDDHKLT 293
Query: 307 NQFANSNPFKFKHISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ + K++ + S + P V++++ G G + + +N +
Sbjct: 294 QHDFEAAFSEVKYVRDVEESKALSANRYPKVIISASGMATGGRVLHHIEAFGGIHQNTLL 353
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKELM-- 422
G+ GT + ++ +EV + +G P+ +V ++ SAHAD + +L+
Sbjct: 354 FSGFQAAGTRGRKLLEGAREVKI-HGRWMPIKAEVAELAMLSAHADSDELMRWLRSFTKA 412
Query: 423 PPNIILVHGESHEMGRLKTKLMTEL 447
P + +VHGES L+ ++ EL
Sbjct: 413 PERVFIVHGESDASEALRERIQREL 437
>gi|335437956|ref|ZP_08560713.1| beta-lactamase domain protein [Halorhabdus tiamatea SARL4B]
gi|334893560|gb|EGM31771.1| beta-lactamase domain protein [Halorhabdus tiamatea SARL4B]
Length = 640
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 36/463 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-----EIDPSAIDVLL 80
IT LG EVGR+ +S +L D G P PY + S++D ++
Sbjct: 184 ITTLGCCREVGRAAFILSTPETRVLIDAGDKPGAED--EYPYLQVPEALGVGASSLDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYTTEPTRDLMGLLTLDYLDVAAKEGRSPPYDSEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ +++ +++ IK + AGH+LG+A+ F + V ++GD ++
Sbjct: 301 REAIKHTIPIEYGDVTDISPDIKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A E P+ + ++ESTYG + + E+R ++I T QGG VLIPAF
Sbjct: 361 RLFNGAVNEFPRV--ETLVLESTYGGRNDYQTDQEDSEQRLKEIIRDTYEQGGSVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQELMLVLEEAMREG-DIPEMPVHLDG-MMWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + +D P++V+++ G + G + + D +
Sbjct: 477 ENPFLADQFNHIDGGEEERQEVTDGEPAIVLSTSGMVTGGPIMSWLEHFGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLMN-----GLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL 421
GY +GTL + I + E+ + N G T L M V + FS HAD F+K +
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPIGNNGRGRGNTLSLEMNVETVDGFSGHADRQGLENFVKTM 596
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P ++ VHG+ + L + L E N + PKN ++
Sbjct: 597 NPRPEKVLCVHGDESSVQDLSSALYHEY---NMRTFAPKNLET 636
>gi|448411939|ref|ZP_21576295.1| mRNA 3'-end processing factor [Halosimplex carlsbadense 2-9-1]
gi|445669873|gb|ELZ22481.1| mRNA 3'-end processing factor [Halosimplex carlsbadense 2-9-1]
Length = 639
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 125/462 (27%), Positives = 223/462 (48%), Gaps = 35/462 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S +L DCG P +PY + PS++D ++
Sbjct: 184 ITTLGCCREVGRAAFILSTPETRVLIDCGDKPGAE--DEVPYLQVPEALGSGPSSLDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVASKEGRTPPYESEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ IK + +GH+LG+A+ F + V ++GD ++
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDIKLTLHNSGHILGSAISHFHIGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A E P+ + ++ESTYG + + E++ +VI TI + G+VLIPAF
Sbjct: 361 RLFNGAVNEFPRV--ETLVLESTYGGRNDYQTDQADSERKLKEVISDTIERDGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAM-REGDIPEVPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + +D GP +V+++ G ++ G + V
Sbjct: 477 QNPFLADQFNHIDGGEEERQEVADGGPCIVLSTSGMVEGGPIMSWLRHVGGQDEGTMVFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGL----TAPLNMQVHYI-SFSAHADYAQTSTFLKEL- 421
GY +GT+ + I + E+ + +G T LNM V + FS HAD F++ +
Sbjct: 537 GYQAQGTMGRRIQNGWDEIPVNDGGGRADTLSLNMDVETVDGFSGHADRQGLENFVRTMN 596
Query: 422 -MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P ++ VHG+ L + L E N + PKN ++
Sbjct: 597 PRPEKVLCVHGDESSTQDLSSALYHEF---NMRTFAPKNLET 635
>gi|118443365|ref|YP_878383.1| metallo-beta-lactamase family protein [Clostridium novyi NT]
gi|118133821|gb|ABK60865.1| metallo-beta-lactamase family protein, putative [Clostridium novyi
NT]
Length = 512
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 130/453 (28%), Positives = 215/453 (47%), Gaps = 54/453 (11%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYS----GMAALPYFDEIDPSAIDVLLITHFH 85
GA V SC M + KTIL DCG+ G P+ DP ID ++++H H
Sbjct: 7 GAAKCVTGSCHIMKFNDKTILLDCGLFQGKDEKVRGNDEFPF----DPKKIDYVILSHAH 62
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
+DH+ +P L K FKG V T ATK + ++L D + + E + + I + +D
Sbjct: 63 IDHSGRIP-LLYKKGFKGEVICTRATKQLCSIMLPDSGYIQETETE--WKNRKRIRQGLD 119
Query: 146 KIEVL----------------DFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG----- 183
IE L D+ + +EV +G K AGH+LG+++ + I
Sbjct: 120 TIEPLYTAKIAELSMYLFRDYDYDEIIEVFDGFKIRFREAGHLLGSSIVEMYIKEDYEDE 179
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
V+++YTGD +R ++ D I+E+TYG ++H + K ++I T
Sbjct: 180 VKIVYTGDLGNTNKPIIRDPSYITYA-DYIIMETTYGDRVHGDMDWSFKELVNIITDTFE 238
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQT----YIL 299
+GG V+IP+F++GR QE+L L +Y N+ ++ I+ SPLA +Y+ +
Sbjct: 239 RGGNVIIPSFSVGRTQEVLYALSKYVKNNI-LKDVTIFVDSPLAANTSKIYEECSDYHDS 297
Query: 300 SMNERIRNQFANSNPFKFKHI----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLF-- 353
M +R NP FK + +P SI G ++++++ G ++G +
Sbjct: 298 EMKSLVRTGL---NPLNFKGVKYTNTPQESIQINKFKGNAIIISASGMCEAGRIKHHLKH 354
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYA 412
++W K+ + V GY EGTL + I+ K+V L G +N +++ + S HAD
Sbjct: 355 NLW--RKECSVVFVGYQAEGTLGRAILDGNKKVNLF-GEPIAVNAKIYNLEGLSGHADRN 411
Query: 413 QTSTFLKELM--PPNIILVHGESHEMGRLKTKL 443
++ +LM P I+LVHG++ K L
Sbjct: 412 GLVDWIDKLMVRPKEILLVHGDTKSQQSFKELL 444
>gi|158321392|ref|YP_001513899.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus oremlandii
OhILAs]
gi|158141591|gb|ABW19903.1| RNA-metabolising metallo-beta-lactamase [Alkaliphilus oremlandii
OhILAs]
Length = 546
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 229/464 (49%), Gaps = 59/464 (12%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE----IDPSAIDVLLI 81
I LGA V S + ++ +L DCG+ + G L ++ DPS ID LL+
Sbjct: 3 IEFLGAAKLVTGSNILVTTGKYKVLLDCGL---FQGSEDLEELNKEKFHFDPSDIDFLLL 59
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YVKVSKVSVEDM------ 133
+H H+DH+ +P + K F+G+++ T ATK + +++L D +++VS E+
Sbjct: 60 SHSHIDHSGRIPKLV-KEGFRGKIYCTKATKDLCEIMLVDSAHIQVSDTEWENRKGKRSG 118
Query: 134 ------LFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIA---- 182
L+ +D S+ E + + Q V++N I AGH+LG+++ + I
Sbjct: 119 KAPVEPLYTVEDALLSLRYFESVLYDQKVQINEEISVRFRDAGHILGSSIVELWIEENDD 178
Query: 183 GVRVLYTGDYSREEDRHLRAAELPQF--SPDICIIESTYGVQLHQPRNIREKRFTDVIHS 240
V+++++GD R+ P+F D I+ESTYG + H+ R ++ DVI+
Sbjct: 179 TVKIVFSGDLGM---RNKPLIHDPEFIEEADYLILESTYGNRTHENVEKRVEKLVDVINK 235
Query: 241 TISQGGRVLIPAFALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTY 297
T+ +GG VLIP+FA+GR QEL+ L +Y+ N+ E F +PIY SP+A +++
Sbjct: 236 TVLRGGTVLIPSFAVGRTQELIYELKQYYENNKELEQFMRVPIYIDSPMAISATQIFKRN 295
Query: 298 ILSMNERIRNQ-FANSNPFKFKHI---------SPLNSIDDFSDVGPSVVMASPGGLQSG 347
+ N+ + + NP F+++ LN+ DF P V++++ G +G
Sbjct: 296 SYAFNDTAKELILSGDNPLDFENLYFVRDYKESMALNN-SDF----PKVIISASGMCTAG 350
Query: 348 LSRQLF--DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS- 404
R ++W + KN+ V GY GTL + + V ++ A L ++H I
Sbjct: 351 RIRHHLKHNLWKA--KNSVVFVGYQAVGTLGRILKDGATSVKILGENIAVL-AEIHSIEG 407
Query: 405 FSAHADYAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTE 446
FS H D +L+ + P I LVHGE + L ++L+ E
Sbjct: 408 FSGHIDQPGILDWLQGFKKKPKKIFLVHGEEDSLSTL-SELINE 450
>gi|150400464|ref|YP_001324230.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013167|gb|ABR55618.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 432
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 121/426 (28%), Positives = 210/426 (49%), Gaps = 44/426 (10%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGI-----------HPAYSGMAALPYFDEIDPSAIDV 78
G EVGRSC+ + IL DCG+ +P Y P F+++ P+A+
Sbjct: 7 GGAMEVGRSCIEVRSDNSIILLDCGVKLLEEDNNKNNNPEY------PVFNKLYPNAV-- 58
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
I+H HLDH +LP L ++ T T+ + K LL D +K+ + + F++
Sbjct: 59 -FISHAHLDHTGALP-VLPHMKINCPIYSTPMTQDLTKELLKDSLKIGLMEHGQVPFNKG 116
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA-GVRVLYTGDYSREED 197
D+ + + + +++ + +F Y AGH+ G+A ++ G R++YTGD +
Sbjct: 117 DLKKEIRHHKDIEYKNMEQFRDFEFTYYDAGHIPGSATIDLNYENGKRIVYTGDTRVSKT 176
Query: 198 RHLRAAELPQFSPDI--CIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
R + A+L DI IIESTYG + H R + EK F + + T+ +GG +IP FA+
Sbjct: 177 RLVNGADLSYCDNDINALIIESTYGGENHPDRELLEKEFLNKVKETVERGGVAIIPVFAV 236
Query: 256 GRAQELLLILDEY-WSNHPEFHNIPIYYASPLAK--KCMAVYQTYILSMNERIRNQFANS 312
R+QE+LL+L+E WS +PIY+ K K M L + ++++ F ++
Sbjct: 237 DRSQEILLMLNEVNWS-------VPIYFDGLGIKITKIMLNQNPSYLENHAKLKSAFLST 289
Query: 313 NPFK--FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
+ K K++ I+D + G +++++ G L G D + +D +++ ++ GY
Sbjct: 290 HKVKEDRKYV-----IEDLRENG-GIIVSTAGMLSGGPVLNYIDNFWNDPRSSLILTGYQ 343
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
V+ T + ++ K + L +V FSAHAD + T +K+ P N+I+ H
Sbjct: 344 VKNTAGRILLDTGK--FPIGELFIKPKFEVAQYEFSAHADMDELRTIVKKANPENLIIQH 401
Query: 431 GESHEM 436
GE +
Sbjct: 402 GEEESI 407
>gi|448301186|ref|ZP_21491181.1| beta-lactamase [Natronorubrum tibetense GA33]
gi|445584700|gb|ELY39015.1| beta-lactamase [Natronorubrum tibetense GA33]
Length = 648
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 129/461 (27%), Positives = 223/461 (48%), Gaps = 30/461 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLL 80
D + +T LG EVGR+ + IL DCG P G + E P + +D ++
Sbjct: 194 DWVRVTTLGCCREVGRASFVLHTPNTKILIDCGDKPGAEGEVPYLHVPEAMPLTELDAVV 253
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A LP L K + G ++ T T+ + LL DY+ V+ + + +
Sbjct: 254 LTHAHLDHSALLP-LLFKYGYDGPIYTTEPTRDLMGLLQLDYLDVASKEGRTPPYASEQV 312
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
+++ +D+ ++ IK + AGH+LG+A F V ++++GD E
Sbjct: 313 RQAIKHTIPVDYGAVTDIAPDIKLTMHNAGHILGSATAHFHVGNGFHNIVFSGDVHYEPT 372
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + +ESTYG + + E R ++I T Q G V+IPAF
Sbjct: 373 RLFNGAINDFPR--AETMFMESTYGRRNDFQADTDESEARVREIIRETYDQNGIVVIPAF 430
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E E +PIY + ++ A++ Y + + +R + +
Sbjct: 431 AVGRSQELMLVLEEAMRED-EIPTMPIYLDG-MIREATAIHTAYPEYLRDGLRQRILHED 488
Query: 312 SNPF---KFKHISPLNSI-DDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F+ + + ++ + PS+++++ G + G ++ + N +
Sbjct: 489 ENPFMADQFQQVDGGQPMREEIAGDEPSIILSTSGMVTGGPIMSWLELLGPESNNTLLFV 548
Query: 368 GYVVEGTLAKTIISEPKEVTL---MNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL-- 421
GY +GTL + I S EVTL N LT L+ ++ +S FS HAD ++KE+
Sbjct: 549 GYQADGTLGRRIKSGRTEVTLEGRANHLT--LHCRIESVSGFSGHADRNGLEQYVKEMNP 606
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P I+ VHG+ +L + L + N + PKN ++
Sbjct: 607 QPETILCVHGDDQATDQLSSALYQK---HNIRTHQPKNLET 644
>gi|421619120|ref|ZP_16060084.1| beta-lactamase domain-containing protein [Pseudomonas stutzeri
KOS6]
gi|409778916|gb|EKN58596.1| beta-lactamase domain-containing protein [Pseudomonas stutzeri
KOS6]
Length = 452
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 122/445 (27%), Positives = 210/445 (47%), Gaps = 30/445 (6%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
L +T LG V S +++ IL DCG+ + L + ++P ID +++T
Sbjct: 2 LSLTSLGGAGTVTGSKHLITHGNTRILIDCGLFQGLKNLRELNWQRLAVEPKDIDAVVLT 61
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H HLDH LP + F+G++F T AT+ + +L+L D + + +
Sbjct: 62 HAHLDHCGYLPRLV-LDGFRGKIFSTSATRDVAELILLDSAWLQEKDADFANRKGFSKHK 120
Query: 134 ----LFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
L+ +D R++ + + + HQ E+ G + +AGH+LGAA +DI G R+++
Sbjct: 121 PALPLYRVRDAERTLLQFKPVPLHQETELPGNARLLLRSAGHILGAATAQIDIGGKRLVF 180
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
+GD R +D + E P D IIESTYG + H + E D+I T +GG V
Sbjct: 181 SGDLGRFDDMVMPDPE-PVTEADYIIIESTYGNRRHDRSDAVEA-LGDIIERTTRRGGTV 238
Query: 249 LIPAFALGRAQELLLILDEYW--SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+IPAFA+GRAQ L+ L W N+P+Y SP+A + + S + ++
Sbjct: 239 VIPAFAVGRAQSLIYDL---WLLRQRGRLRNVPVYLDSPMATNATVLLHRH--SDDHKLT 293
Query: 307 NQFANSNPFKFKHISPLNSIDDFS-DVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ + K++ + S + P V++++ G G + + +N +
Sbjct: 294 QHDFEAAFSEVKYVRDVEESKALSANRYPKVIISASGMATGGRVLHHIEAFGGIHQNTLL 353
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKELM-- 422
G+ GT + ++ +EV + +G P+N +V + SAHAD + +L
Sbjct: 354 FSGFQAAGTRGRKLLEGAREVKI-HGRWMPINAEVAELPMLSAHADSDELMRWLGGFTRA 412
Query: 423 PPNIILVHGESHEMGRLKTKLMTEL 447
P + +VHGES+ L+ ++ EL
Sbjct: 413 PEGVFIVHGESNASEALRERIQREL 437
>gi|328950114|ref|YP_004367449.1| beta-lactamase domain-containing protein [Marinithermus
hydrothermalis DSM 14884]
gi|328450438|gb|AEB11339.1| beta-lactamase domain protein [Marinithermus hydrothermalis DSM
14884]
Length = 447
Score = 165 bits (418), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 202/434 (46%), Gaps = 23/434 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
+ P GA V S + ++G +L DCG++ F P +D ++++H H
Sbjct: 3 LYPCGAAGTVTGSAHLVEHQGYRLLLDCGLYQGADEEKNTEPFP-FAPREVDAVVLSHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV----------SKVSVEDMLF 135
LDH LP L + + GRV+ T T + L+L D + V + +L+
Sbjct: 62 LDHVGRLP-LLVRQGYAGRVYATPPTLRLVPLILEDALGVMTHEHERALRKGLEPPPLLW 120
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ ++ ++E L ++ AGH+ G+A V G R++++GD
Sbjct: 121 TEADLQEAVGRLEPLPYYTPRAFGPFTVTLRNAGHIAGSAFVEVVADGKRLVFSGDLGNR 180
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
L + P + D+ + E TYG + H+P + F +++ T++ GG+VLIP+FA+
Sbjct: 181 RKELLPDPDYPPRA-DLVLSEGTYGDRAHRPFQSTLEEFAEILTKTLAAGGKVLIPSFAM 239
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NP 314
RAQELL + E +P++ SPL + VY + + + ++ + +P
Sbjct: 240 ERAQELLFHIRE-LEQEGRIPEVPVFVDSPLTTRITEVYTALVDTFSPEVQALYRQGVDP 298
Query: 315 FKFKHISPLNSIDD---FSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F+ + + + S+++ +D+ G +V++A G L G D K+A VI GY
Sbjct: 299 FRPRQLEHVRSVEESKALNDLAGSAVIIAGSGMLSGGRILHHLRHHLPDPKSALVIVGYQ 358
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILV 429
G L I+ P V + G P+ VH + FS HA + +L E P ++LV
Sbjct: 359 PRGGLGARILERPAAVRIY-GHEVPVRASVHTLGGFSGHAGQDELLDWLAE--EPRVLLV 415
Query: 430 HGESHEMGRLKTKL 443
HGE ++ L +L
Sbjct: 416 HGELEKLHALGKRL 429
>gi|313127082|ref|YP_004037352.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogeometricum borinquense DSM 11551]
gi|448288450|ref|ZP_21479649.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogeometricum borinquense DSM 11551]
gi|312293447|gb|ADQ67907.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halogeometricum borinquense DSM 11551]
gi|445569601|gb|ELY24173.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogeometricum borinquense DSM 11551]
Length = 640
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 126/461 (27%), Positives = 227/461 (49%), Gaps = 32/461 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
I+ LG EVGR+ +S IL DCG P + L + + A +D +++TH
Sbjct: 184 ISTLGCCREVGRASFILSTPETRILIDCGDKPGSDDVPYLQVPEALGSGANSLDAVILTH 243
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + + +
Sbjct: 244 AHLDHSALIP-LLFKYGYDGPIYTTEPTRDLMGLLTLDYLDVAAKEGRTPPYESEMVREA 302
Query: 144 MDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHL 200
+ L++ ++ +K + AGH+LG+A+ F + V ++GD E+ R
Sbjct: 303 IKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRLF 362
Query: 201 RAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
A + P+ + ++ESTYG + + E++ DVI+ T +GG+VLIPAFA+G
Sbjct: 363 NGAVNDFPRV--ETLVLESTYGGRNDYQTDQADSEEKLIDVINETYDRGGKVLIPAFAVG 420
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNP 314
R+QE++L+L+E + + ++P++ + + A++ TY + + +R++ + NP
Sbjct: 421 RSQEIMLVLEEAMRSG-KIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHEDENP 478
Query: 315 F---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F +F HI + D +D GP++++++ G + G D K+ V GY
Sbjct: 479 FLADEFNHIDGGEDERQDVADDGPAIILSTSGMVTGGPIMSWLRHVGPDPKSRLVFVGYQ 538
Query: 371 VEGTLAKTIISEPKEVTLMN------GLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL-- 421
+GTL + I + E+ + + T L M V + FS HAD A F+K +
Sbjct: 539 AQGTLGRRIQNGWDEIPVNDRDNVGRSNTLQLKMDVETVDGFSGHADRAGLENFVKTMNP 598
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P ++ VHG+ + L + L + N + PKN ++
Sbjct: 599 RPEKVLCVHGDERSVQDLSSALY---HNYNMRTFAPKNLET 636
>gi|345867698|ref|ZP_08819703.1| RNA-metabolising metallo-beta-lactamase family protein [Bizionia
argentinensis JUB59]
gi|344047865|gb|EGV43484.1| RNA-metabolising metallo-beta-lactamase family protein [Bizionia
argentinensis JUB59]
Length = 461
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 133/454 (29%), Positives = 206/454 (45%), Gaps = 44/454 (9%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLL 80
+Q+ +T LGA V S + G +L DCG+ + L + D ID AIDV+L
Sbjct: 7 NQVKVTFLGASQVVTGSKYLLETYGLNVLIDCGMFQGLKELRELNWRDLSIDVPAIDVVL 66
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED-------- 132
+TH HLDH LP L K F G++ T T AI +++L D K+ + S E
Sbjct: 67 LTHGHLDHVGYLPR-LVKQGFSGKIIGTAPTLAIAEIILKDSAKIHEESAEKANKEKFTK 125
Query: 133 --------MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
+ D + R E +H E K+ GH+LGA +D+
Sbjct: 126 HDPALPFYTIRDAEQTIRLFQSQEPEKWHTLSEF--FKYRFQYNGHILGATFIELDVFEK 183
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
R +++GD R +D L A + P+++ D IESTYG +LH P E TD++ TI
Sbjct: 184 RFVFSGDIGRRDDYLLVAPKRPEWA-DFLFIESTYGNRLH-PEEDVETILTDLVKETIHN 241
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPE--FHNIPIYYASPLAKKCMAVYQTY----- 297
G ++IP+FA+ R Q L+ +L W + E NIPI SP+ + + V++ +
Sbjct: 242 RGNLIIPSFAVERLQTLMYVL---WKLYKENRIPNIPIIVDSPMGQNVLEVFRQFPDWHK 298
Query: 298 -ILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIW 356
S + + N + +K +IDD +V+A G + G
Sbjct: 299 LTASEYDAMCNHVTITESYK----DTWKAIDDKR---AKIVIAGSGMVTGGRVLTYLQQL 351
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQV-HYISFSAHADYAQTS 415
+K ++ GY EGT + ++ E+ G P+N +V H S SAHAD
Sbjct: 352 IDEKNTTVLLVGYQAEGTRGRQLLDGAHEIKFF-GKYYPVNAKVMHLQSLSAHADQKDLL 410
Query: 416 TFLKEL--MPPNIILVHGESHEMGRLKTKLMTEL 447
++ + +P + L+HGE M + K+ TEL
Sbjct: 411 HWMGAIKNIPEKVFLIHGEPAAMDAFRVKIQTEL 444
>gi|226229328|ref|YP_002763434.1| hypothetical protein GAU_3922 [Gemmatimonas aurantiaca T-27]
gi|226092519|dbj|BAH40964.1| hypothetical protein GAU_3922 [Gemmatimonas aurantiaca T-27]
Length = 465
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 122/466 (26%), Positives = 222/466 (47%), Gaps = 39/466 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLITHFHLDH 88
GA EV SC + +T+L DCG+ + P ID ++++H H+DH
Sbjct: 7 GAAQEVTGSCHILRVGNRTVLLDCGMFQGKRSESRAKNMQLPLPVDEIDAIVLSHAHIDH 66
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE----------DMLFDEQ 138
A LPY + + +K ++ T AT+ + ++L D + + E + ++ +
Sbjct: 67 AGRLPYLVAQG-YKNNIWATSATRDLCAIMLADSAHIQEKDAEFLARHRDEIVEPMYRVE 125
Query: 139 DINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAG----VRVLYTGDYS 193
D R+++++ + +H+ +V +G++ AGH+LG+A +++ R++++GD
Sbjct: 126 DATRTLERMIGMPYHKWFDVTDGVRAMYTDAGHILGSASVTLELREGDTFRRLVFSGDIG 185
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R +R + P D+ I ESTYG + H+ + ++ V+ T ++GGRV+IP+F
Sbjct: 186 RSGLAIIRDPQPPTTGADVIICESTYGNRDHESVDGAREQLARVVRETAARGGRVIIPSF 245
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY--ILSMNERIRNQFAN 311
A+GR QEL+ L + IPI+ SPLA +V+ + + +E + +
Sbjct: 246 AVGRTQELVYDL-HGLRREGKIPAIPIFIDSPLATDATSVFAMHPEVFDHSEDLVRR--T 302
Query: 312 SNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
+ F F ++ + + + GP VV+A+ G +SG SD +N +I
Sbjct: 303 RDLFDFPMVTFTRDVAESKRLNTLHGPMVVIAASGMAESGRILHHLRYGASDPRNTILIV 362
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVH-YISFSAHADYAQTSTFLKELMP--- 423
G+ E TL + I+ E ++V + G PL QV + +SAHAD + +L+ +
Sbjct: 363 GFQAEHTLGRRIV-ERRDVLRIFGEEVPLGAQVEVLLGYSAHADRGELHRWLQAVRAAGA 421
Query: 424 ------PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463
P++ LVHGE+ +L ++ I P N S+
Sbjct: 422 ADGRDHPHVCLVHGETEAQEAFAERLRSD--GFRVDIPAPGNTVSL 465
>gi|284165869|ref|YP_003404148.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
turkmenica DSM 5511]
gi|284015524|gb|ADB61475.1| KH-domain/beta-lactamase-domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 644
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 129/467 (27%), Positives = 223/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRAPPYESEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E+ ++I+ T +GG+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVMESTYGGRNDYQTDQEDSERNLKEIINDTYDEGGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E N + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMRNG-DIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D P +++++ G + G D + V
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSTLVFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + EV M G T LN+ V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGGNNGRGTLDLNVDVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L + + + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSAL---YHNYDMRTFAPKNLET 640
>gi|406914642|gb|EKD53800.1| hypothetical protein ACD_60C00150G0002 [uncultured bacterium]
Length = 452
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 125/446 (28%), Positives = 214/446 (47%), Gaps = 36/446 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVLLI 81
+T LGA V S +S + K L DCG+ + G+ + I+P ID +++
Sbjct: 3 LTFLGATQTVTGSKFLLSIENKKFLIDCGL---FQGLKEFRQRNWGKFPIEPHLIDAVIL 59
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YVKVSKVSVEDM------ 133
TH H+DH+ LP + K F G+V+ + ATK + +LL D Y++ + +
Sbjct: 60 THAHIDHSGYLPVLI-KNGFTGKVYCSTATKELCAILLPDSGYLQEEEAKFANKYGYTKH 118
Query: 134 -----LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
L+ + +S+ + L F + ++ + I AGH+LGA+ V G VL
Sbjct: 119 KPAIPLYTRAEAEQSLLQFHALQFRKNYKIGDDIHLSLIPAGHILGASFVQVKYHGTIVL 178
Query: 188 YTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
++GD R D + + Q + D ++ESTYG +LH+ N ++ ++I+ T ++GG
Sbjct: 179 FSGDLGRPHDPIMHPPSVIQ-AADYLVLESTYGNRLHKKINPLDE-LCEIINRTAARGGT 236
Query: 248 VLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ--TYILSMNERI 305
+++PAFA+GRAQ LL + + + N+PIY SP+AK +++ T + +NE +
Sbjct: 237 IVVPAFAVGRAQHLLYFMYQLKIAN-RIPNLPIYLDSPMAKDATDIFRKNTDLHRLNEEL 295
Query: 306 RNQFANSNPFKFKHISPLNSIDDFSDVGPS-VVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
+ + ++ +V S +++++ G L+ G ++ D KN
Sbjct: 296 SRKVCEIATY----VNTREESKALDEVTSSKIIISASGMLEGGRVLHHIRVFAPDPKNTI 351
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL-- 421
V GY GT II + + G T P+N +V +S SAHADY + +L
Sbjct: 352 VFAGYQASGTRGADIIQGKGAIKIF-GETIPINAEVEVLSNMSAHADYEEILQWLTHFNH 410
Query: 422 MPPNIILVHGESHEMGRLKTKLMTEL 447
P + + HGE LK K+ T+
Sbjct: 411 HPRKVFITHGEPEAAASLKEKIETQF 436
>gi|374628280|ref|ZP_09700665.1| KH-domain/beta-lactamase-domain protein [Methanoplanus limicola DSM
2279]
gi|373906393|gb|EHQ34497.1| KH-domain/beta-lactamase-domain protein [Methanoplanus limicola DSM
2279]
Length = 630
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 121/428 (28%), Positives = 207/428 (48%), Gaps = 26/428 (6%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVLLIT 82
L +T LG EVGR+ MS IL DCG P + Y EI P +++D ++IT
Sbjct: 179 LRVTTLGCCREVGRAAFLMSTPESKILIDCGEKPGNNDGYPYLYVPEIYPLNSLDAVVIT 238
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINR 142
H HLDH A +P L K ++G V+ T AT+ + +L DY+ V + + +++ +
Sbjct: 239 HAHLDHCALVP-LLYKYGYEGPVYSTPATRDLSVMLQLDYLDVVANETSKVPYSSKEVQQ 297
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRH 199
+ L++ ++ +K + AGH+LG+A+ F V + +TGD++ + R
Sbjct: 298 YLKHSITLNYGSVTDIAPDVKLTYHNAGHILGSAIAHFHVGDGLYNIAFTGDFNYAKSRL 357
Query: 200 LRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
A + P+ + +ESTYG + R E++ + ++ T+++GG+++IPAFA+
Sbjct: 358 FGPATSQFPRL--EAVFMESTYGGSNDMQPSRKDAEEKLYEAVNDTVNRGGKIIIPAFAV 415
Query: 256 GRAQELLLILDEYWSNHPEFHNIP--IYYASPLAKKCMAVYQTYILSMNERIRNQFANS- 312
GR+QE++L L+E IP Y + K+ A++ TY +N +R
Sbjct: 416 GRSQEVMLALEEGM----RLEKIPKVKVYLDGMIKEATAIHTTYPEYLNPDLRKLIFQDG 471
Query: 313 -NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF ++S D+ P V++ + G L G + D+KN +
Sbjct: 472 MNPFLADCFEQVDSSSKRGDIIGSGDPCVIITTSGMLNGGPVMEYLYGLAQDEKNMLIFV 531
Query: 368 GYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL--MPP 424
GY +GT + I KE+ L T +N+++ + FS H+D Q ++ L P
Sbjct: 532 GYQADGTTGRRIQKGWKEIPLGRRETININLEIKTVDGFSGHSDRKQLMAYVNHLNPRPE 591
Query: 425 NIILVHGE 432
I +HG+
Sbjct: 592 KIFTIHGD 599
>gi|167045029|gb|ABZ09693.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_APKG8G15]
Length = 643
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/436 (27%), Positives = 210/436 (48%), Gaps = 24/436 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHP-AYSGMAALPYFD--EIDPSAIDVLLITHFH 85
LG +VGRSC+ ++ +L DCGI+P A S A P D I +D ++I H H
Sbjct: 191 LGGFGQVGRSCMLLTTPDSKVLVDCGINPGARSPREAFPRLDWANITLDELDAVVIGHAH 250
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP L K +KG ++ T T + L+ D +KV+ ++ E+D+ + M
Sbjct: 251 LDHTGFLPVLL-KYGYKGPIYCTEPTLPMMNLIQLDAIKVAVAQGRTPMYAERDVFQVMR 309
Query: 146 KIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLRA 202
+ + + +++ IK AGH+LG+A F + +YTGD + L +
Sbjct: 310 QTITIPYGAVTDISPDIKLVLSNAGHILGSATCHFHIGNGEHNFVYTGDIKYGKSMLLES 369
Query: 203 AELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
A + +IESTYG + + R E F ++S + +GG+VLIP A+GRAQE
Sbjct: 370 ANTNYPRVETLLIESTYGAKEDIQPDRQEVESAFIASVNSVLKEGGKVLIPIPAVGRAQE 429
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFK 318
L+L++D+Y + E P++ + ++ A+++ + + ++ + + NPF +
Sbjct: 430 LMLVIDQYMKSG-ELVEAPVFMEG-MIQEATAIHEAFPEYLVRDLKKKILETDDNPFDSE 487
Query: 319 HISPLNSIDD----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+ + + D+ + P +++A+ G L+ G F KN + Y V GT
Sbjct: 488 YFTNITHQDERDEPLRENSPCIIIATSGMLEGGPVLDYFRNIAPHTKNKILFVSYQVNGT 547
Query: 375 LAKTIISEPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NII 427
L + ++ ++V+++ +N + FS H+DY Q +F+ L P ++
Sbjct: 548 LGRRVMDGARQVSILGKEGRIEVVSINCSTERLDGFSGHSDYNQLMSFVHRLRPKLRRVL 607
Query: 428 LVHGESHEMGRLKTKL 443
+ HGE + L T +
Sbjct: 608 VNHGEKRKSENLSTSI 623
>gi|429217522|ref|YP_007175512.1| KH-domain/beta-lactamase-domain-containing protein [Caldisphaera
lagunensis DSM 15908]
gi|429134051|gb|AFZ71063.1| KH-domain/beta-lactamase-domain protein [Caldisphaera lagunensis
DSM 15908]
Length = 667
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 239/472 (50%), Gaps = 31/472 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHL 86
LG+ EVGRS + + IL D G + + A P+FD E +D ++I+H H+
Sbjct: 187 LGSFGEVGRSSILLDTGESKILLDAGFAQSGYSVDAYPHFDAPEFRLEDLDAIVISHAHM 246
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDK 146
DH LP L K ++G +MT T+ I L+L D++ + ++ F +DIN + +
Sbjct: 247 DHMGLLP-ILYKYGYRGPAYMTPPTRDITVLMLKDFMDLFVREGKEPPFTMKDINTMLTR 305
Query: 147 IEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGD---YSREEDRHL 200
++++ +++ K AGH+LG+A+ + I +LYTGD Y +++ +
Sbjct: 306 TITVNYNVVTDLSPDAKLTFSDAGHILGSALTHIHIGQGLFNLLYTGDIKYYKMKDETNT 365
Query: 201 RAAELPQFSP----DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
+ P + + I+E+TYG R E + ++I + G++LIP A+G
Sbjct: 366 TRLQPPANTEFHRVEALIMETTYGGTETATREEAEAQLFELIKKVYERKGKILIPVMAVG 425
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNP 314
RAQ++++++++ + + +PIY L + A+Y +Y + + IR++ ++NP
Sbjct: 426 RAQDIMVLINKALQDK-KIPEMPIYIDG-LIYEVTAIYTSYPELLAKPIRDEILHNDNNP 483
Query: 315 FKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
F ++ +N + GP++++++ G + G + F ++ NA V Y
Sbjct: 484 FIGPNMVFVNDSSKRDEAIYSEGPAIIISTSGMMTGGPILEYFKNLADNQNNALVFVSYQ 543
Query: 371 VEGTLAKTIISEPKEVTLMNG---LTAPLNMQVHYI-SFSAHADYAQTSTFLKELMP-PN 425
GTL + II KE+ +M+G T +N++V I FS HA+ ++ FL+ L P P
Sbjct: 544 AAGTLGRKIIEGEKEIQMMDGNQIKTIKVNLEVQRIEGFSGHANRSELQGFLRSLTPKPR 603
Query: 426 IILV-HGESHE---MGRLKTKLMTELA-DCNTKIITPKNCQSVEMYFNSEKM 472
II++ HGE + G L + +L + ++I P+N +++ ++ + K+
Sbjct: 604 IIILNHGEPSQTISFGLLIKQRWDKLGFESTPEVIYPENLEAIRLFPRNVKL 655
>gi|383621866|ref|ZP_09948272.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
gi|448702794|ref|ZP_21700151.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
gi|445776887|gb|EMA27863.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
Length = 644
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 219/467 (46%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ VI+ T +GG+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSEEKLKRVINETYDRGGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMREG-DIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D P +++++ G + G D +
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIISEPKEV---------TLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + E+ T LN+ V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGNGGGRGTLQLNVDVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSALY---HDYNMRTFAPKNLET 640
>gi|206895786|ref|YP_002246519.1| RNA-metabolising metallo-beta-lactamase [Coprothermobacter
proteolyticus DSM 5265]
gi|206738403|gb|ACI17481.1| RNA-metabolising metallo-beta-lactamase [Coprothermobacter
proteolyticus DSM 5265]
Length = 504
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 138/479 (28%), Positives = 220/479 (45%), Gaps = 51/479 (10%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T LGA EV S + +L D G+ + G + +D A ++ LL+TH
Sbjct: 3 LTFLGAAQEVTGSSYLLESDNAKLLIDFGM---FQGKEEDWNYQPLDIKAKEVNALLLTH 59
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------ 131
HLDH+ +P L K F+G +F T T + KLL D VK+ K E
Sbjct: 60 AHLDHSGRIP-VLVKNGFRGPIFATPPTIELTKLLWEDTVKLMKEEKERLDRKRRRQDKP 118
Query: 132 --DMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
++LFDE DIN + L ++QT +F +GH+LGA+ V+ ++++++
Sbjct: 119 PVELLFDEDDINEASKLFVPLPWNQTERFKEFQFTFRPSGHILGASSIEVNAENIKLVFS 178
Query: 190 GDYSREEDRHLRAAELPQF---SPDICIIESTYGVQLHQPRNIREKR--FTDVIHSTISQ 244
GD ++ E P + D +IESTYG + H ++IRE R F + + + I
Sbjct: 179 GDLGPQDT----VLEPPPYIFEYADYVVIESTYGDRQH--KDIRETRAEFKNALSAAIRD 232
Query: 245 GGRVLIPAFALGRAQ----ELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS 300
+VLIP F + RAQ EL L+L + PE +P+++ SPL K AVY +Y
Sbjct: 233 RSKVLIPTFVVDRAQRIIYELYLLLTQ---EMPELATMPMFFDSPLGNKITAVYSSYPEY 289
Query: 301 MNERIRNQFANSNPFKF--KHISPLNSIDDFSDVGPSVVMASPGGLQSG--LSRQLFDIW 356
+ + F + K ++I +++ +++MA G G L +W
Sbjct: 290 LLPHLAEFFQGMDQEKLGIQYIDTPEQSKKLNNLDHALIMAGSGMCTGGRILHHLKHGLW 349
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTS 415
+ KN + GY GTL ++I+ + V +M G + Q+H I+ FS+HAD
Sbjct: 350 --NPKNHLIFVGYQAAGTLGRSIVDGARNVKIM-GEDIAVRAQIHTINGFSSHADAKDLL 406
Query: 416 TFLKELMPPNIILV-HGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMA 473
++ K P L+ HGE R L L + + P QSV + E++A
Sbjct: 407 SWAKNFQPDTTFLITHGEP----RPAKSLAVSLGNMGYHSVIPARRQSVTLRPRKERIA 461
>gi|386855219|ref|YP_006259396.1| Cleavage and polyadenylation specificity factor-related protein
[Deinococcus gobiensis I-0]
gi|379998748|gb|AFD23938.1| Cleavage and polyadenylation specificity factor-related protein
[Deinococcus gobiensis I-0]
Length = 487
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/434 (27%), Positives = 203/434 (46%), Gaps = 32/434 (7%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
GA V S ++ + IL DCG+ + A D D + +D +++TH HLD
Sbjct: 6 FGAACTVTGSMHLLTLGDRRILVDCGLFQGGDELEARNREDFAFDVAGLDAVILTHAHLD 65
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS------------KVSVEDM-- 133
H LP L + ++G V+ T T A+ + +L D ++ + ED
Sbjct: 66 HVGRLP-LLVRRGYRGAVYCTPPTAALAETVLLDSARLQVEGYKQDLRRARRQGREDEVP 124
Query: 134 --LFDEQDINRSMDKIE-VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
L++E+D++R++ + L+F +T + G++ AGH+LG+A ++ G R+L +G
Sbjct: 125 PPLYEEEDVHRALALLRPSLEFGETATIAGVRVTPGRAGHILGSAYLLLSAGGERLLMSG 184
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
D E L+ P D +IE+TY + H+ F + +++ QGG++LI
Sbjct: 185 DLGNRES-GLQLDFTPPPEADAAVIETTYANRTHRSWEATLAEFAQALRTSVRQGGKILI 243
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P FA+ RAQ +L L + + E IPI+ SP+A + Y Y + +R++
Sbjct: 244 PTFAIERAQVILATLKDLMDSG-EVPRIPIFLDSPMAARATGEYFEYGDELRADVRDELR 302
Query: 310 ANSNPFKFK--HISPLNS----IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
+PF+ H+ P ++ I+ + GP+++MA G + G + +
Sbjct: 303 GGEDPFRPNTLHVVPTSAESQRINRYD--GPAIIMAGNGMMTGGRIQHHLKHHLWKPSTS 360
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELM 422
++ Y G+L I+ + V +M G + QVH I FSAHAD FL
Sbjct: 361 LIVVSYQSPGSLGGRIVGGAEHVRIM-GEEVAVRAQVHTIGGFSAHADQDDLLAFLDTAG 419
Query: 423 PPNIILVHGESHEM 436
P++ LVHGE M
Sbjct: 420 RPHVWLVHGEPEVM 433
>gi|297569676|ref|YP_003691020.1| RNA-metabolising metallo-beta-lactamase [Desulfurivibrio
alkaliphilus AHT2]
gi|296925591|gb|ADH86401.1| RNA-metabolising metallo-beta-lactamase [Desulfurivibrio
alkaliphilus AHT2]
Length = 479
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 131/473 (27%), Positives = 224/473 (47%), Gaps = 49/473 (10%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFDEIDPSAIDVLLITHF 84
IT GA V S + G+ +L DCG+ + L D ++D L+++H
Sbjct: 3 ITFFGAAGTVTGSQHLIEVNGQRLLLDCGLFQGKRKESFELNRRGFCDARSLDALILSHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------- 131
H+DH+ ++P + K F G + T AT+ + ++L D + + V+
Sbjct: 63 HIDHSGNIPCLV-KNGFTGDIICTPATRDLCAIMLMDSAHIQEQDVQFVNKQRAKNGQHL 121
Query: 132 -DMLFDEQDINRSMDK-IEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI----AG-- 183
+ L++++D+ R+M + I + Q + GI AGH+LG+A ++DI AG
Sbjct: 122 FEPLYEKEDVVRAMGQFIGISPKRQKEILPGIYLTFTEAGHMLGSANVVLDIYEDGAGDN 181
Query: 184 ----------VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233
R++++GD R +R DI I+ESTYG + HQP E+
Sbjct: 182 GGEKEGRGRHRRLIFSGDIGRPGIPIIRDPAQLSEGADILIMESTYGHRSHQPYPDSERE 241
Query: 234 FTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCM 291
+++ T +GG +LIPAFA+GR Q+L+ L + + ++ PE +PIY SPLA +
Sbjct: 242 LERIVNETYQRGGCLLIPAFAVGRTQQLVYALHKLYLDNAIPE---VPIYVDSPLATRAT 298
Query: 292 AVYQTYILSMNERIRN---QFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGL 344
+Y+ + + + IR+ + + NPF F + S+ D + P+V++++ G +
Sbjct: 299 DIYRLHPEAYDREIRDFILKGNHDNPFGFDTLRYTQSVGDSKQLNALKKPAVIISASGMM 358
Query: 345 QSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
+ G SD +N ++ G+ TL + I+ E +E + G PL +V ++
Sbjct: 359 EGGRILHHLRNRVSDPRNTILVTGWQAPNTLGRKIV-EGQETVKVFGEEFPLQAKVEQLT 417
Query: 405 -FSAHADYAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKI 454
FS HAD + E P + LVHGE+ L + L EL N +I
Sbjct: 418 GFSGHADREGLLAWAGAMEKKPSHTFLVHGEAEATQALASALQEELGFSNIEI 470
>gi|145591929|ref|YP_001153931.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
DSM 13514]
gi|145283697|gb|ABP51279.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 425
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/426 (27%), Positives = 199/426 (46%), Gaps = 26/426 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG EVGR V + +L D G+ P + P + + ++H HLDH
Sbjct: 6 LGGAGEVGRLAVLIKTASSGLLLDYGVSFDAQDRPVFPL--HVRPKDLSAVFLSHAHLDH 63
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ +LP+ T + ++ T T + L+ TD +K+S + L +++ +M
Sbjct: 64 SGALPFLYIST--RTPLYSTPLTMELSDLMYTDAIKLSGYYLPYTL---EEVKETMSSAI 118
Query: 149 VLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE--- 204
L + + V+V NGI Y AGH+ G+A+ ++++ G V++TGD++ + LR A+
Sbjct: 119 PLTYGEPVDVGNGISLTAYNAGHIPGSALAVIEVEGRVVVFTGDFNTVDTNLLRGADVYN 178
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
LP+ +PD+ I+E+TY H PR+ EK F + + GG VLIP+FALGRAQE+LL
Sbjct: 179 LPK-NPDVVIMEATYASANHPPRDKLEKEFVQSVKEVLEGGGSVLIPSFALGRAQEILLT 237
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLN 324
L ++ +P Y LA++ + Y +++ P
Sbjct: 238 LVKHGVEYP-------IYVDGLARQINQIVGRY----PHLLKDPSLYKKALDVSIEVPNT 286
Query: 325 SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
+ + PSV++A G ++ G + F ++KN +P + T I+S K
Sbjct: 287 YVRKGAAEEPSVIIAPAGMIKGGAALFYFKKMAGNRKNGVFLPSFQAPNTPGFQILS--K 344
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP-NIILVHGESHEMGRLKTKL 443
+++G + ++ + FSAHA + F+K P IILVH + L KL
Sbjct: 345 GYAIVDGAVIKVEARLEWFDFSAHAGRGELEAFIKRFSPETKIILVHTDPATAAPLVKKL 404
Query: 444 MTELAD 449
+ D
Sbjct: 405 AEDGYD 410
>gi|110636203|ref|YP_676411.1| beta-lactamase-like protein [Chelativorans sp. BNC1]
gi|110287187|gb|ABG65246.1| beta-lactamase-like protein [Chelativorans sp. BNC1]
Length = 452
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 127/455 (27%), Positives = 216/455 (47%), Gaps = 48/455 (10%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
L +T LG V S ++ + IL DCG+ + L + + PS+ID +++T
Sbjct: 2 LTLTSLGGAGTVTGSKHLLTNGDRRILIDCGLFQGLKNLRELNWEPLPVAPSSIDAVVLT 61
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H HLDH+ LP + + FKGR++ T AT+ + +L+L D +++ E
Sbjct: 62 HAHLDHSGYLPKLV-RDGFKGRIYATAATRDVAELILKDSGFLNEKDAEYANRKGFSKHK 120
Query: 134 ----LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAMFMVDIAGVRVLY 188
L+ +D R+M+ ++ F + V++ G + AGH+LGAA +++AG R+ +
Sbjct: 121 PALPLYGVRDAERAMEFFSIVPFDKAVQLPGGATLTFRHAGHILGAASAEIELAGRRIAF 180
Query: 189 TGDYSREEDRHL-RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGR 247
+GD R D L A +P+ D ++ESTYG ++H P + E +++ T+ +GG
Sbjct: 181 SGDLGRYGDPMLPDPAPVPE--ADYIVVESTYGNRIHDPADTTEV-LGEIVERTVKRGGT 237
Query: 248 VLIPAFALGRAQELLLILDEYW--SNHPEFHNIPIYYASPLAKKCMAVYQTYI----LSM 301
V+IPAFA+GRAQ +L L W N+PIY SP+A + + L+
Sbjct: 238 VVIPAFAVGRAQSVLYHL---WKLKTAGRLANVPIYLDSPMAIDATDLLHAHSGDHRLTH 294
Query: 302 NE-----RIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIW 356
+E +I + K SP P +V+++ G G +
Sbjct: 295 DECAAICKIATYTRDVEGSKAITASPW----------PKIVISASGMATGGRVLHHLKAF 344
Query: 357 CSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTS 415
SD K+ + GY GT + ++ +E+ + +G P+ ++ +S SAHAD +
Sbjct: 345 ASDPKHTILFSGYQAAGTRGRAMVQGAREIRI-HGQWVPVRAEIDDLSMLSAHADADELM 403
Query: 416 TFLK--ELMPPNIILVHGESHEMGRLKTKLMTELA 448
+L E P + +VHGE L+ ++ EL
Sbjct: 404 RWLSGFERGPSRVFIVHGEDEASEALRIRIDRELG 438
>gi|357974067|ref|ZP_09138038.1| beta-lactamase-like protein [Sphingomonas sp. KC8]
Length = 452
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 124/466 (26%), Positives = 217/466 (46%), Gaps = 39/466 (8%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVL 79
L +T LGA V S + + GK IL DCG+ + GM L + + P++I+ +
Sbjct: 2 LTMTSLGAAGTVTGSKHLLEHDGKRILIDCGL---FQGMKNLRELNWEPLPVPPASINAV 58
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------ 133
++TH HLDH+ LP + + F+GR++ T AT+ + L+L D +++ + +
Sbjct: 59 ILTHAHLDHSGYLPRLV-RDGFRGRIYATAATRDVAALILKDSGYLNEKDADFLNRIGAT 117
Query: 134 -------LFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVR 185
L+ +D R+++ + F ++ E+ G + AGH+LGAA ++ G R
Sbjct: 118 RHKPALPLYGVRDAERAIESFTPVQFSKSTELPGGARVTFRHAGHILGAATADIEWGGQR 177
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQG 245
++++GD R D + E D +IESTYG ++H P + E V+ T+ +G
Sbjct: 178 IVFSGDLGRYSDPFMLDPEAVA-QADYVVIESTYGNRIHDPTDAAEA-LGAVVERTVRRG 235
Query: 246 GRVLIPAFALGRAQELLLILDEYWS--NHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
G V+IPAFA+GRAQ LL L W N+PIY SP+A + ++ +
Sbjct: 236 GTVIIPAFAVGRAQALLYYL---WKLREAGRLKNVPIYLDSPMAISASDLLCEHL--GDH 290
Query: 304 RIRNQFANSNPFKFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
R+ Q + + + P +V+++ G G D+KN
Sbjct: 291 RLTPQVCRDACDIATYTREVEQSKAITASPYPKIVISASGMATGGRVLHHLKASAPDQKN 350
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL 421
+ G+ GT + ++ +E+ + +G P+ +V + SAHAD + +L
Sbjct: 351 TILFSGFQAAGTRGRAMLEGAREIKI-HGQWVPIEAEVADLPMLSAHADANELMRWLSGF 409
Query: 422 M--PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P + +VHGE+ L++++ EL + P+ Q E+
Sbjct: 410 QRPPKRVFIVHGEAQASEALRSRIDQEL---GWDAVVPRQAQMFEL 452
>gi|379003367|ref|YP_005259039.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Pyrobaculum oguniense TE7]
gi|375158820|gb|AFA38432.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Pyrobaculum oguniense TE7]
Length = 425
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/420 (27%), Positives = 197/420 (46%), Gaps = 26/420 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG EVGR V + +L D G+ P + P + + ++H HLDH
Sbjct: 6 LGGAGEVGRLAVLIKTASSGLLLDYGVSFDAQDRPVFPL--HVRPKDLSAVFLSHAHLDH 63
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ +LP+ T + ++ T T + L+ TD +K+S + L +++ +M
Sbjct: 64 SGALPFLYIST--RTPLYSTPLTMELSDLMYTDAIKLSGYYLPYTL---EEVKETMSSAI 118
Query: 149 VLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAE--- 204
L + + V+V NGI Y AGH+ G+A+ ++++ G V++TGD++ + LR A+
Sbjct: 119 PLTYGEPVDVGNGISLTAYNAGHIPGSALAVIEVEGRVVVFTGDFNTVDTNLLRGADVYN 178
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
LP+ +PD+ I+E+TY H PR+ EK F + + GG VLIP+FALGRAQE+LL
Sbjct: 179 LPK-NPDVVIMEATYASANHPPRDKLEKEFVQSVKEVLEGGGSVLIPSFALGRAQEILLT 237
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLN 324
L ++ +P Y LA++ + Y +++ P
Sbjct: 238 LVKHGVEYP-------IYVDGLARQINQIVGRY----PHLLKDPSLYKKALDVSIEVPNT 286
Query: 325 SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
+ + PSV++A G ++ G + F ++KN +P + T I+S K
Sbjct: 287 YVRKGAAEEPSVIIAPAGMIKGGAALFYFKKMAGNRKNGVFLPSFQAPNTPGFQILS--K 344
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPP-NIILVHGESHEMGRLKTKL 443
+++G + ++ + FSAHA + F+K P IILVH + L KL
Sbjct: 345 GYAIVDGAVIKVEARLEWFDFSAHAGRGELEAFIKRFSPETKIILVHTDPATAAPLVKKL 404
>gi|148360321|ref|YP_001251528.1| metallo-beta lactamase family transporter protein [Legionella
pneumophila str. Corby]
gi|296106617|ref|YP_003618317.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
gi|148282094|gb|ABQ56182.1| metallo-beta lactamase family [Legionella pneumophila str. Corby]
gi|295648518|gb|ADG24365.1| metallo-beta-lactamase family protein [Legionella pneumophila
2300/99 Alcoy]
Length = 453
Score = 164 bits (416), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 128/451 (28%), Positives = 216/451 (47%), Gaps = 43/451 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGM-----AALPYFDEIDPSAIDVLL 80
+T LGA V S ++ K IL DCG+ Y + A LP IDP ID ++
Sbjct: 3 LTFLGATQTVTGSKYLLTIGSKKILIDCGLFQGYKELRLRNWAPLP----IDPHDIDAVI 58
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTD--YVKVSKVSVEDM----- 133
ITH H+DH LP L K F+G+++ T TKA+ +LL D Y++ + + +
Sbjct: 59 ITHAHIDHTGYLP-LLVKNGFQGKIYATPGTKALCSILLPDSGYLQEEEARLANKYGFSK 117
Query: 134 ------LFDEQDINRSMDKIEVLDF---HQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV 184
L+ E++ ++ E +DF HQ + F + AGH++GAAM +
Sbjct: 118 HQPALPLYTEKEARAALQYFETIDFDTPHQLF--HEFSFEYHRAGHIVGAAMVKIKTKKG 175
Query: 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
+++TGD R D +++ + D ++ESTYG +LH + + VI+ T+ +
Sbjct: 176 SIVFTGDIGRPHDPVMKSPSAIE-EADFLVMESTYGDRLHDATDPLPQ-MAQVINQTVKR 233
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG V+IPAFA+GRAQ LL + E +IP++ SP MA+ T++L +
Sbjct: 234 GGSVIIPAFAVGRAQSLLYFIYELKRQGKIPKDIPVFLDSP-----MAIDATHLLCTYKE 288
Query: 305 IRNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDK 360
+ A + +N+ ++ ++ P +++A+ G Q G + +
Sbjct: 289 DHHLTAEQCRGLCHVATYVNTPEESKEIDRHHMPQIIIAASGMAQGGRILHHLKAFAPNP 348
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLK 419
+N + G+ GT I++ ++V + +G P+ QV + S SAHADY + +L+
Sbjct: 349 RNTLLFTGFQAGGTRGARIVNGERQVKI-HGSLIPIQAQVVVMSSTSAHADYLELLEWLQ 407
Query: 420 ELM--PPNIILVHGESHEMGRLKTKLMTELA 448
P + + HGE H LK ++ +L
Sbjct: 408 HFARPPQKVFITHGEPHSAQTLKERIEKQLG 438
>gi|237809221|ref|YP_002893661.1| beta-lactamase domain-containing protein [Tolumonas auensis DSM
9187]
gi|237501482|gb|ACQ94075.1| beta-lactamase domain protein [Tolumonas auensis DSM 9187]
Length = 452
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 120/448 (26%), Positives = 213/448 (47%), Gaps = 36/448 (8%)
Query: 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLIT 82
L +T LG V S +++ IL DCG+ + L + ++P ID +++T
Sbjct: 2 LSLTSLGGAGTVTGSKHLITHGNTRILIDCGLFQGLKNLRELNWQRLAVEPKDIDAVVLT 61
Query: 83 HFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM--------- 133
H HLDH LP + F+G++F T AT+ + +L+L D + + +
Sbjct: 62 HAHLDHCGYLPRLV-LDGFRGKIFSTSATRDVAELILLDSAWLQEKDADFANRKGFSKHK 120
Query: 134 ----LFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
L+ +D R++ + + + HQ E+ G + +AGH+LGAA +DI G R+++
Sbjct: 121 PALPLYRVRDAERTLLQFKPVPLHQETELPGNARLLLRSAGHILGAATAQIDIGGKRLVF 180
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
+GD R +D + E P + D IIESTYG + H + E D+I T +GG V
Sbjct: 181 SGDLGRFDDMVMPDPE-PVTAADYIIIESTYGNRRHDRSDAVEA-LGDIIERTTRRGGTV 238
Query: 249 LIPAFALGRAQELLLILDEYW--SNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+IPAFA+GRAQ L+ L W +P+Y SP+A A+ + ++ +
Sbjct: 239 VIPAFAVGRAQSLIYDL---WLLRQRGRLRTVPVYLDSPMATSATALLHRHA-DDHKLAQ 294
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
+ F + F ++ + +++ + P V++++ G G + + +N
Sbjct: 295 HDFEAA----FSEVTYMRDVEESKALSANRYPKVIISASGMATGGRVLHHIEAFGGSHQN 350
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL 421
+ G+ GT + ++ +EV + +G P+ +V ++ SAHAD + +L
Sbjct: 351 TLLFSGFQAAGTRGRKLLEGAREVKI-HGRWMPIKAEVAELAMLSAHADSDELMRWLGGF 409
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTEL 447
P + +VHGES+ L+ ++ EL
Sbjct: 410 TRAPEGVFIVHGESNASEALRERIQREL 437
>gi|448317597|ref|ZP_21507147.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
jeotgali DSM 18795]
gi|445602988|gb|ELY56958.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
jeotgali DSM 18795]
Length = 644
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 130/469 (27%), Positives = 221/469 (47%), Gaps = 44/469 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-------IDV 78
IT LG EVGR+ +S IL DCG P G +PY P A ID
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHA--PEALGAGAQTIDA 239
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 240 VVLTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSE 298
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ ++ L++ ++ +K + AGH+LG+A+ F + V ++GD +
Sbjct: 299 MVREAIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYD 358
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + ++ESTYG + + E++ DVI+ + G+VLIP
Sbjct: 359 DTRLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSERKLVDVINEAYDRDGKVLIP 416
Query: 252 AFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-- 309
AFA+GR+QE++L+L+E + + +P++ + + A++ TY + + +R++
Sbjct: 417 AFAVGRSQEIMLVLEEAMRSG-KIPEMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFH 474
Query: 310 ANSNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+ NPF +F HI D +D PS+++++ G + G D ++ V
Sbjct: 475 DDENPFLAEQFNHIDGGEEERQDVADGEPSIILSTSGMVTGGPIMSWLSHLGPDPDSSLV 534
Query: 366 IPGYVVEGTLAKTIISEPKEV---------TLMNGLTAPLNMQVHYI-SFSAHADYAQTS 415
GY +GTL + I + E+ T LNM V + FS HAD A
Sbjct: 535 FVGYQAQGTLGRRIQNGWDEIPTSEVGAMGNGGGRGTLSLNMNVETVDGFSGHADRAGLE 594
Query: 416 TFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 595 NFVKTMNPRPEKVLCVHGDERSTQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|257075969|ref|ZP_05570330.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Ferroplasma acidarmanus fer1]
Length = 637
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 133/472 (28%), Positives = 221/472 (46%), Gaps = 44/472 (9%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGI-------HPAYSGMAALPYFDEIDP-SAID 77
IT LG EVGRS +S +L DCG+ HP A Y EI P +++D
Sbjct: 179 ITALGGHREVGRSATLISTNNSKVLVDCGMININDPEHPWEE--APYLYAPEIQPFTSLD 236
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDH+ LP L K + G V+ T T+ + LL DY+KVS + ++
Sbjct: 237 AVVLTHAHLDHSGLLP-LLFKYGYTGPVYSTAPTRDLAALLQNDYLKVSHSENHKLSYES 295
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSR 194
+ + + L +++T ++ I+ Y AGH+LG+A + I V+ +GD
Sbjct: 296 KHVREELKHTISLKYNETADITPDIRLTFYNAGHILGSAAVHLHIGEGLYNVVLSGDQKY 355
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
E+ A P+ + ++ESTY + RN DV++ T +GG VL+
Sbjct: 356 EKTWLFNPAVNRFPRV--ETLMLESTYAGRDDYSYTRNEATNTLIDVVNRTFDRGGSVLV 413
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-- 308
P FA+GR+QE++L+L++ + N N +Y + + A++ Y +N +R+Q
Sbjct: 414 PVFAVGRSQEVMLVLEDAYRNKMIPENTKVYLDG-MIMEATAIHAAYPEFLNRDLRDQIM 472
Query: 309 FANSNPFKFKHISPL--------NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK 360
NPF +SP+ ID V++A+ G + G + F +D
Sbjct: 473 IKRENPF----LSPIFTSVETRKQRIDVCDSPESKVILATAGMMNGGPVLEYFKTLSADS 528
Query: 361 KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAP---LNMQVHYI-SFSAHADYAQTST 416
+N GY +GTL + I S +TL +G + +NM V FS H+ +
Sbjct: 529 RNTLAFVGYQADGTLGRRIQSGASSITLSDGGKSTKFDINMAVENAEGFSGHSTKRELLN 588
Query: 417 FLKELMP-PNIILV-HGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466
F+ + P PN ILV HG+ ++ + T+ + I+ KN ++ ++
Sbjct: 589 FIGGMQPRPNRILVNHGDGNKCYDFARLIHTKFG---VEAISMKNLETTRLF 637
>gi|385803114|ref|YP_005839514.1| beta-lactamase [Haloquadratum walsbyi C23]
gi|339728606|emb|CCC39763.1| beta-lactamase domain protein [Haloquadratum walsbyi C23]
Length = 639
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/463 (28%), Positives = 220/463 (47%), Gaps = 37/463 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + S++D ++
Sbjct: 184 ISTLGCCREVGRASFVLSTPETRILIDCGDKP---GSDDVPYLQAPEALGSGASSVDAVV 240
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A LP L K + G ++ T T+ + LL DY+ V+ +D +
Sbjct: 241 LTHAHLDHSALLP-LLFKYGYDGPIYTTEPTRDLMGLLQLDYLDVAAKEGRTPPYDSSMV 299
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 300 RETIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDT 359
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + I+ESTYG + + E+ +VI+ T +GG+V+IPAF
Sbjct: 360 RLFNGAVNDFPRV--ETLILESTYGGRDDYQTDQEDSERELIEVINETYDRGGKVVIPAF 417
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E E +P++ + + A++ TY + + +R++ +
Sbjct: 418 AVGRSQEIMLVLEEAMRTG-EIPQMPVHLDG-MIWEATAIHTTYPEYLRDNLRDRIFHDD 475
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + SD P +V+++ G + G +D + V
Sbjct: 476 ENPFLAEEFNHIDAGEEERQAVSDGEPCIVLSTSGMITGGPIMSWLQHIGTDPDSRLVFV 535
Query: 368 GYVVEGTLAKTIISEPKEV-----TLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKEL 421
GY +GTL + I E+ L T L M V +S FS HAD F+K +
Sbjct: 536 GYQAQGTLGRRIQDGWDEIPINGDQLGRSETLTLEMDVTTVSGFSGHADRQGLENFVKTM 595
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P I+ VHG+ + L + L D N + PKN ++
Sbjct: 596 NPRPEKILCVHGDEQSVQDLSSGLY---HDYNLRTFAPKNLET 635
>gi|297527561|ref|YP_003669585.1| beta-lactamase domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256477|gb|ADI32686.1| beta-lactamase domain protein [Staphylothermus hellenicus DSM
12710]
Length = 427
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/443 (28%), Positives = 206/443 (46%), Gaps = 24/443 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I LG GNEVGR+ + K L D G++ P + P + L ITH H
Sbjct: 4 IEILGGGNEVGRAAYLIVDDNKKFLLDYGVNFDEEDHPQFPL--HVRPIELSGLAITHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH + P L T K RVF+T T I KLL++D++K++ ++ + ++
Sbjct: 62 LDHIGAAP--LLYITGKPRVFVTKPTLDIGKLLISDFLKLNAYYID---YSIEEFEAMAS 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDI-AGVRVLYTGDYSREEDRHLRAAE 204
+L++ VE +G K AGH+LG+AM ++ +G R+LYTGD + + L AE
Sbjct: 117 NAYLLEYGVEVENDGFKIIATNAGHILGSAMIYLETPSGHRILYTGDVNTIQTWTLSRAE 176
Query: 205 LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLI 264
L D IIESTYG H PR+ EKR D I + GG VLIPAF++GR+QE++ +
Sbjct: 177 LWPLKIDTLIIESTYGSTKHPPRHYSEKRLVDAIEEVTNAGGTVLIPAFSVGRSQEVMCL 236
Query: 265 LDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLN 324
+ E ++ +Y ++++ +Y + + + + A N F +
Sbjct: 237 V------QAELPHLDVYLDG-MSREITNIYLKHKRFLRDPSLFEKAVQNTFFIRGWHDRR 289
Query: 325 SIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK 384
+ P V+++S G L+ G S + KNA + Y T ++ K
Sbjct: 290 K----AWKKPGVIISSAGMLKGGPSVYYLKKIAKEPKNAVFLVSYQAPNTPGHVLLE--K 343
Query: 385 EVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMP--PNIILVHGESHEMGRLKTK 442
+ GL P+ ++ + S+HA + ++ N+I++HGE L +
Sbjct: 344 GIYEEFGLDEPIKARLEWFDLSSHAGKDGLISIIQRYKNTLKNLIIIHGEPDSASNLAS- 402
Query: 443 LMTELADCNTKIITPKNCQSVEM 465
+ EL + I+ P N +E+
Sbjct: 403 MAVELLGNDVNIVVPLNGDKIEL 425
>gi|448361792|ref|ZP_21550405.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
asiatica DSM 12278]
gi|445649472|gb|ELZ02409.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
asiatica DSM 12278]
Length = 644
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 221/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVAAKEGRTPPYDSERV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI+ T QGG+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQADSEEKLKEVINETYEQGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQELMLVLEEAM-REGDIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D +++++ G + G D + V
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGDSCIILSTSGMVTGGPIMSWLGHIGPDPDSTLVFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + EV M T LNM V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGSDNSRGTLTLNMDVDTVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSAQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|432327997|ref|YP_007246141.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Aciduliprofundum sp. MAR08-339]
gi|432134706|gb|AGB03975.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Aciduliprofundum sp. MAR08-339]
Length = 413
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/444 (25%), Positives = 213/444 (47%), Gaps = 53/444 (11%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG EVG +YM + +LFD G+ P+ LP +D + +TH HLDH
Sbjct: 10 LGGAEEVGSLGLYMEFDELRLLFDYGLTPSKPPAYPLPA------PPVDSMFLTHVHLDH 63
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ +P T ++ ++ T T A+ L+L D +KV+ + + + ++++ + D +
Sbjct: 64 SGMVPKI--STAYEANIYATEPTNAVLPLMLNDTIKVANIEGFPIPYTKEEVESTTDALI 121
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
+++ + VE+ + ++AGH+ G+AM+ + +L+TGD + + HL P
Sbjct: 122 PVEYGKPVELGSLDIVPHSAGHIPGSAMYEIRDDKT-ILFTGDI-QTVNTHLVWGTKP-V 178
Query: 209 SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEY 268
D+ I+ESTY + H PR+ E+ F + I + +GG+ ++P FA+GR QE++LIL
Sbjct: 179 KTDVLIMESTYAGREHPPRDEVERNFLEKIEEIVERGGKAVVPVFAVGRTQEIMLIL--- 235
Query: 269 WSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF-----KFKHI-SP 322
Y +I M I N F + K K +
Sbjct: 236 ---------------------AKTDYDVWIDGMGRFITNLFLQYPQYLRSAKKLKRARNK 274
Query: 323 LNSIDDFSD----VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKT 378
+N + SD + V++A+ G L+ G + +D+++ ++ GY VEGT +
Sbjct: 275 MNIVRRRSDRRKALNGDVIVATGGMLEGGPVLHYINHLKNDRRSGILLTGYQVEGTNGRL 334
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
++ E + + G+ ++M++++ FSAHA +++ F ++ P IIL+HG++ E
Sbjct: 335 LMDEG--ILELYGIKEKIDMELNFFDFSAHAGHSELVEFAEKCSPEKIILMHGDNRE--- 389
Query: 439 LKTKLMTELADCNTKIITPKNCQS 462
L +L + + PKN +
Sbjct: 390 ---ALAKDLKNMGFDVFLPKNDEE 410
>gi|295695465|ref|YP_003588703.1| RNA-metabolising metallo-beta-lactamase [Kyrpidia tusciae DSM 2912]
gi|295411067|gb|ADG05559.1| RNA-metabolising metallo-beta-lactamase [Kyrpidia tusciae DSM 2912]
Length = 1001
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 204/427 (47%), Gaps = 22/427 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITH 83
+T LG G ++G SC++ + L D G+ LP D + + I + +TH
Sbjct: 3 VTFLG-GTDIGASCLWFETQTGGWLVDAGVR--MDDRDPLPSLDRLARAGDRIQGIFVTH 59
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS 143
H DH +LP + VFMT AT + +++L D +KVS+ + +F E +N
Sbjct: 60 AHQDHIGALP-LISSLFPDAPVFMTRATLDLARVMLADALKVSREEGKVSVFTEDQLNDL 118
Query: 144 MDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREEDRHLR 201
++ V+ + NG++ Y+AGH+LGA F+ + G VL TGD+S R L
Sbjct: 119 WPRVRVMGQDKVFGWNGMQVATYSAGHILGAVSIGFVTEAEGS-VLVTGDFSVTPGRLLP 177
Query: 202 AAELPQFSP-DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+P+ S D I ESTYG +LH R +E R + I +GG VLIPAFA+GRAQE
Sbjct: 178 GLRMPRGSAYDAVITESTYGNRLHGNRAEQEDRMARQVAEVIERGGFVLIPAFAVGRAQE 237
Query: 261 LLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNP-FKFKH 319
+L IL ++ + ++ P+ L + VY+ + + + + F +
Sbjct: 238 VLTILQDFMRYNKDYPKFPLVVDG-LVRSVCPVYEAHGELLRGPAKRMLRTTGSLFDRED 296
Query: 320 ISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
I + ++ +V P+ ++AS G L G S D + NA ++ GY E +
Sbjct: 297 IRFVRRPEERREVVEGRPACIVASSGMLNGGPSVFYADKLIQHENNAILLCGYQDEESPG 356
Query: 377 KTIIS-----EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
+ +++ E + + P+N +V S SAHAD + +L P ++LVHG
Sbjct: 357 RRLLNMAEQPESERRWFLPDRVVPVNAKVALYSLSAHADRRELVQTAAQLRPRQVLLVHG 416
Query: 432 --ESHEM 436
E+ EM
Sbjct: 417 DPEAKEM 423
>gi|226323676|ref|ZP_03799194.1| hypothetical protein COPCOM_01451 [Coprococcus comes ATCC 27758]
gi|225207860|gb|EEG90214.1| metallo-beta-lactamase domain protein [Coprococcus comes ATCC
27758]
Length = 539
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 129/451 (28%), Positives = 221/451 (49%), Gaps = 61/451 (13%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIH--PAYSGMAALPYFDEIDPSAIDVLLITH 83
+T +GA +EV SC Y+ GK IL DCG+ P +P I+PS ID +L+TH
Sbjct: 3 LTFIGAAHEVTGSCHYLEACGKHILIDCGLEQGPDLYENQEIP----INPSMIDYILLTH 58
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------ 131
H+DH+ +P L K FKG + T AT + ++L D + + E
Sbjct: 59 AHIDHSGKIP-LLVKNGFKGEIICTFATSDLCSIMLRDSAHIQESEAEWRNRKALRSGAP 117
Query: 132 --DMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMV----DIAGV 184
+ L+ QD ++ + +D++QT+++ GI+ GH+LG++ V D
Sbjct: 118 LYEPLYTVQDAMNAVALLAPIDYNQTIQLCKGIELRFTDVGHLLGSSCIEVWITEDGVSK 177
Query: 185 RVLYTGDYSR------EEDRHLRAAELPQFSPDICIIESTYGVQLH---QPRNIREKRFT 235
+++++GD ++ +H+ AA D +IESTYG ++H +P I++ T
Sbjct: 178 KIVFSGDVGNIDQPIIKDPQHVDAA-------DYLVIESTYGNRVHSTVKPDYIKD--LT 228
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAV 293
V+ T ++GG V+IP+FA+GR QELL + E N+ PE+ N +Y SPLA + V
Sbjct: 229 RVLRETFAKGGNVVIPSFAVGRTQELLYFIREIKENNLLPEYQNFEVYVDSPLAIEATNV 288
Query: 294 YQTYILSMNERIRNQFANS--NPFKFKHI-----SPLNSIDDFSDVGPSVVMASPGGLQS 346
+Q + S + + NP F+ + S + + +F+D P V++++ G ++
Sbjct: 289 FQKNVQSCFDEDAMALISKGINPLLFQGLKTTITSEESKMINFND-KPKVIISASGMCEA 347
Query: 347 GLSRQLF--DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS 404
G R ++W K+ + GY GTL + ++ E + G +N ++ ++
Sbjct: 348 GRIRHHLKHNLW--RKECTILFVGYQAVGTLGRKLVESKPESVRLFGENVEVNARIEVLA 405
Query: 405 -FSAHADYAQTSTFLKEL--MPPNIILVHGE 432
S HAD ++ P +I +VHGE
Sbjct: 406 GISGHADMNGLLNWIDGFKEKPSHIFVVHGE 436
>gi|417926423|ref|ZP_12569822.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
gi|341589273|gb|EGS32555.1| beta-Casp domain protein [Finegoldia magna SY403409CC001050417]
Length = 539
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 243/511 (47%), Gaps = 67/511 (13%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGA EV SC + + + DCG+ + + DEID S ++ +L+TH H
Sbjct: 3 ITFLGAAQEVTGSCYVVETEKHKFMVDCGLFQGSKELEQKNH-DEIDFSDVEFMLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS-- 143
+DH +P L K F+ ++ T ATK + +++L D K+ + VE ++ + RS
Sbjct: 62 IDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE---WENRKRQRSGK 117
Query: 144 ---------MDKIEVLD------FHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA----G 183
+D + + + + V++N I+ AGH+LG++ + I
Sbjct: 118 PLLSPLYTTIDAMSCISLFKGRFYDEVVKINEDIRVIFRDAGHMLGSSSLEIFITENKNT 177
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
+++++GD + L + D ++ESTYG ++H+P ++I +
Sbjct: 178 TKIIFSGDIGTSNNPILNNPYVLS-GCDYLVMESTYGNRIHEPYKESVHELINIIEKVSA 236
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFH---NIPIYYASPLAKKCMAVYQTYILS 300
+GG V+IP+FA+GR QE++ L+ Y+ + H +P+Y SP+A + +
Sbjct: 237 KGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAFMENTDL 296
Query: 301 MNERIRNQFAN-SNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLF-- 353
N++ ++ ++ N F+F+++ + +ID+ + P V+++S G +G R
Sbjct: 297 FNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNSVKFPRVIISSSGMATAGRVRHHLKH 356
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYA 412
++W D+KNA V GY +G+L + ++ EV L G T +N ++ + FS HAD
Sbjct: 357 NLW--DEKNAVVFVGYQAQGSLGRILLDGVDEVKLF-GETIKVNAKIFNLGGFSGHADQN 413
Query: 413 QTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPK------------ 458
F+ ++ P I + HGE+ L +KL+ E N + I P+
Sbjct: 414 NLMEFVDNMKIKPKKIFITHGENDGAEAL-SKLLIE--KYNVEAIIPEIYSTEEFAPGNY 470
Query: 459 --------NCQSVEMYFNSEKMAKTIGRLAE 481
N ++ ++Y EK+ K I RL E
Sbjct: 471 NIEQEISTNRENNDLYEELEKIKKKIDRLYE 501
>gi|126458658|ref|YP_001054936.1| beta-lactamase domain-containing protein [Pyrobaculum calidifontis
JCM 11548]
gi|126248379|gb|ABO07470.1| beta-lactamase domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 634
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 131/455 (28%), Positives = 213/455 (46%), Gaps = 34/455 (7%)
Query: 16 PVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA 75
PV +EG + +T LG EVGRS V +S +L DCG+ P
Sbjct: 167 PVVKEG-PITVTFLGGAMEVGRSAVLVSTGESNVLLDCGLKPVQDDEDFPLLDMLDLDRL 225
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLF 135
V+L TH H+DH LP L K ++G V+ T TK +LL DYV++ + F
Sbjct: 226 DAVVL-THAHMDHVGCLP-LLYKYGYRGPVYATDPTKYQAYILLMDYVELKEREGGLPSF 283
Query: 136 DEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDY 192
D+ + LD+ + ++ IK Y AGH +G+AM + I R +LYTGD+
Sbjct: 284 SRADVEAVIYHTITLDYEEVTDITPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDF 343
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ R L A ++ I+ESTYG + + PR E + T+++GG+VLI
Sbjct: 344 KYGKTRLLNRAVNKFKRVEMLIMESTYGGRDDVQPPRVEAENALAKHVAETVAKGGKVLI 403
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-F 309
PAF+ GR QE+L IL++ +PI Y + + + VY Y +N + + +
Sbjct: 404 PAFSTGRGQEILYILNKMMEGGL-IPRVPI-YVDGMIVETLNVYLMYPHYLNPEVAEEIY 461
Query: 310 ANSNPF----------KFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
+ NPF + K + + I+ + + P+V++A G L G F
Sbjct: 462 SGVNPFTTSGAVVIVDRAKRVE--DRINQVAKIAQSEEPAVIIAPHGMLNGGPILDYFAQ 519
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-----FSAHAD 410
D++N + Y EGTL + I++ +E T+ + + +Q+ + FS H+D
Sbjct: 520 LAPDERNKLIFVSYQAEGTLGRRILNGEREFTVRSLTAGEIKVQMRMEAASIPGFSGHSD 579
Query: 411 YAQTSTFLK--ELMPPNIILVHGESHEMGRLKTKL 443
+ +++ E P I+L+HGE ++ L T +
Sbjct: 580 RRELMKYVEHIEPKPKKIVLIHGEPSKIISLATSI 614
>gi|169824737|ref|YP_001692348.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
gi|167831542|dbj|BAG08458.1| putative metallo-beta-lactamase superfamily protein [Finegoldia
magna ATCC 29328]
Length = 539
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 243/511 (47%), Gaps = 67/511 (13%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGA EV SC + + + DCG+ + + DEID S ++ +L+TH H
Sbjct: 3 ITFLGAAQEVTGSCYVVETEKHKFMVDCGLFQGSKELEQKNH-DEIDFSDVEFMLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS-- 143
+DH +P L K F+ ++ T ATK + +++L D K+ + VE ++ + RS
Sbjct: 62 IDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE---WENRKRQRSGK 117
Query: 144 ---------MDKIEVLD------FHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA----G 183
+D + + + + V++N I+ AGH+LG++ + I
Sbjct: 118 PLLIPLYTTIDAMSCISLFKGRFYDEVVKINEDIRVIFRDAGHMLGSSSLEIFITENKNT 177
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
+++++GD + L + D ++ESTYG ++H+P ++I +
Sbjct: 178 TKIIFSGDIGTSNNPILNNPYVLS-GCDYLVMESTYGNRIHEPYKESVHELINIIEKVSA 236
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFH---NIPIYYASPLAKKCMAVYQTYILS 300
+GG V+IP+FA+GR QE++ L+ Y+ + H +P+Y SP+A + +
Sbjct: 237 KGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAFMENTDL 296
Query: 301 MNERIRNQFAN-SNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLF-- 353
N++ ++ ++ N F+F+++ + +ID+ + P V+++S G +G R
Sbjct: 297 FNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNSVKFPRVIISSSGMATAGRVRHHLKH 356
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYA 412
++W D+KNA V GY +G+L + ++ EV L G T +N ++ + FS HAD
Sbjct: 357 NLW--DEKNAVVFVGYQAQGSLGRILLDGVDEVKLF-GETIKVNAKIFNLGGFSGHADQN 413
Query: 413 QTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPK------------ 458
F+ ++ P I + HGE+ L +KL+ E N + I P+
Sbjct: 414 NLMEFVDNMKIKPKKIFITHGENDGAETL-SKLLIE--KYNVEAIIPEIYSTEEFEPGNY 470
Query: 459 --------NCQSVEMYFNSEKMAKTIGRLAE 481
N ++ ++Y EK+ K I RL E
Sbjct: 471 NIEQEISTNRENNDLYEELEKIKKKIDRLYE 501
>gi|91203673|emb|CAJ71326.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 468
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/447 (27%), Positives = 216/447 (48%), Gaps = 36/447 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-EIDPSAIDVLLITHFHLD 87
+GA V S + ++L DCG+ + A + ID +D ++++H H+D
Sbjct: 7 IGAAKTVTGSKHLIRTSRASVLLDCGLFQGHRKEADEKNRNFSIDGKQLDAIVLSHAHID 66
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-------------- 133
H+ +LP K ++G ++ T AT+ + +L D + K E +
Sbjct: 67 HSGALPCIF-KNGYRGPIYATPATRDLCSPMLMDTAWIMKGDAEHIQKLISRGAKHLDPV 125
Query: 134 --LFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG----VRV 186
L+ E+D+ ++ + + +H+ + GI + AGHVLG+A+ ++D+ VR+
Sbjct: 126 EPLYGERDVAGTLSQFIGIPYHRKQTIAPGISLSFFDAGHVLGSAISVIDVEDDGQKVRL 185
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
+TGD R+ LR E+P + ESTYG +LH P + + +VI+ T +GG
Sbjct: 186 AFTGDLGRKHLPILRDPEIPD-GISCLLTESTYGDRLHAPIELTIEALAEVINRTGKKGG 244
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMN-ERI 305
+++IP+FAL RAQE++ L + + +IP+Y SPL K V++ + + E
Sbjct: 245 KIVIPSFALERAQEIIYALKK-LHDQKRIPSIPVYIDSPLTVKLTDVFKLHPECYDTEAF 303
Query: 306 RNQFANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDIWCSDKK 361
+ ++PF+F + ++S++D + PS+V+++ G + G D +
Sbjct: 304 ALLHSENSPFEFPGLKYISSVEDSKKISSSTEPSIVISASGMCEGGRILHHLAATIGDAR 363
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQTSTFLKE 420
N +I GY E TL + ++ + EV + G+ L +V ++ FS HAD F
Sbjct: 364 NTVIIVGYQAEHTLGRRLVEKRPEVKIY-GVMRRLEAEVVVLNGFSGHADQNGLLRFADA 422
Query: 421 LMPPN----IILVHGESHEMGRLKTKL 443
L +ILVHGE LKTKL
Sbjct: 423 LRSKGHLEKVILVHGEPKSQETLKTKL 449
>gi|302380226|ref|ZP_07268698.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|303235047|ref|ZP_07321671.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
gi|302312009|gb|EFK94018.1| putative ribonuclease [Finegoldia magna ACS-171-V-Col3]
gi|302493902|gb|EFL53684.1| RNA-metabolizing metallo-beta-lactamase [Finegoldia magna BVS033A4]
Length = 539
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 243/511 (47%), Gaps = 67/511 (13%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
IT LGA EV SC + + + DCG+ + + DEID S ++ +L+TH H
Sbjct: 3 ITFLGAAQEVTGSCYIVETEKHKFMVDCGLFQGSKELEQKNH-DEIDFSDVEFMLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRS-- 143
+DH +P L K F+ ++ T ATK + +++L D K+ + VE ++ + RS
Sbjct: 62 IDHTGRIP-LLYKNGFRKPIYCTKATKDLAEIMLMDSAKIQESDVE---WENRKRQRSGK 117
Query: 144 ---------MDKIEVLD------FHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIA----G 183
+D + + + + V++N I+ AGH+LG++ + I
Sbjct: 118 PLLSPLYTTIDAMSCISLFKGRFYDEVVKINEDIRVIFRDAGHMLGSSSLEIFITENKNT 177
Query: 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
+++++GD + L + D ++ESTYG ++H+P ++I +
Sbjct: 178 TKIIFSGDIGTSNNPILNNPYVLS-GCDYLVMESTYGNRIHEPYKESVHELINIIEKVSA 236
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFH---NIPIYYASPLAKKCMAVYQTYILS 300
+GG V+IP+FA+GR QE++ L+ Y+ + H +P+Y SP+A + +
Sbjct: 237 KGGTVIIPSFAVGRTQEIIYELNSYYDYQIKDHYEKKVPVYVDSPMALEATKAFMENTDL 296
Query: 301 MNERIRNQFAN-SNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLF-- 353
N++ ++ ++ N F+F+++ + +ID+ + P V+++S G +G R
Sbjct: 297 FNQKAKDYISSGDNVFEFENLHYVKNIDESKMLNSVKFPRVIISSSGMATAGRVRHHLKH 356
Query: 354 DIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYA 412
++W D+KNA V GY +G+L + ++ EV L G T +N ++ + FS HAD
Sbjct: 357 NLW--DEKNAVVFVGYQAQGSLGRILLDGVDEVKLF-GETIKVNAKIFNLGGFSGHADQN 413
Query: 413 QTSTFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPK------------ 458
F+ ++ P I + HGE+ L +KL+ E N + I P+
Sbjct: 414 NLMEFVDNMKIKPKKIFITHGENDGAEAL-SKLLIE--KYNVEAIIPEIYSTEEFDPGNY 470
Query: 459 --------NCQSVEMYFNSEKMAKTIGRLAE 481
N ++ ++Y EK+ K I RL E
Sbjct: 471 NIEQEISTNRENNDLYEELEKIKKKIDRLYE 501
>gi|448368913|ref|ZP_21555680.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
aegyptia DSM 13077]
gi|445651456|gb|ELZ04364.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
aegyptia DSM 13077]
Length = 644
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 132/467 (28%), Positives = 221/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVAAKEGRTPPYDSEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ IK + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDIKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI+ T QGG+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQADSEEKLKEVINETYEQGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQELMLVLEEAM-REGDIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D +++++ G + G D + V
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGDSCIILSTSGMVTGGPIMSWLGHIGPDPDSTLVFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + EV M T LNM V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGSDNSRGTLTLNMDVDTVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSAQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|448358886|ref|ZP_21547560.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
chahannaoensis JCM 10990]
gi|445644566|gb|ELY97579.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
chahannaoensis JCM 10990]
Length = 644
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 222/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ISTLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD ++
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI+ T +GG+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSEEKLKEVINETYEKGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+++E N E ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVIEEAMRNG-EIPSMPVHLDG-MIWEATAIHTTYPEYLRDELRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D +++++ G + G D ++ V
Sbjct: 477 ENPFLAEEFNHIDGGEEERQDVADGDQCIILSTSGMVTGGPIMSWLGHIGPDPESTMVFV 536
Query: 368 GYVVEGTLAKTIISEPKEV---------TLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + E+ T LN+ V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGGGNGRGTLALNLDVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|448298653|ref|ZP_21488681.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
tibetense GA33]
gi|445591323|gb|ELY45529.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
tibetense GA33]
Length = 645
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 128/468 (27%), Positives = 224/468 (47%), Gaps = 41/468 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRAPPYESEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI T +GG+V+IPAF
Sbjct: 361 RLFNGATNDFPRV--ETLVLESTYGGRNDYQTDQQDSEEKLKEVITETYEKGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L++ + + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEQAMRSG-DIPEMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + + +D P +++++ G + G D + V
Sbjct: 477 ENPFLAEEFNHIDAGEEERQEVADGEPCIILSTSGMVTGGPIMSWLGHLGPDPDSTLVFV 536
Query: 368 GYVVEGTLAKTIISEPKEV---------TLMNGL-TAPLNMQVHYI-SFSAHADYAQTST 416
GY +GTL + I + E+ + NG T LNM V + FS HAD A
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGSGGNGRGTLSLNMNVETVDGFSGHADRAGLEN 596
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 FVKTMNPRPEKVLCVHGDERSTQDLSSAL---YHDYNMRTFAPKNLET 641
>gi|448348697|ref|ZP_21537545.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
taiwanensis DSM 12281]
gi|445642358|gb|ELY95426.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
taiwanensis DSM 12281]
Length = 644
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 131/467 (28%), Positives = 221/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVAAKEGRTPPYDSEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +VI+ T QGG+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQADSEEKLKEVINETYEQGGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQELMLVLEEAM-REGDIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D +++++ G + G D + V
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGDSCIILSTSGMVTGGPIMSWLGHIGPDPDSTLVFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + EV M T LNM V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGSDNSRGTLTLNMDVDTVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSAQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|448678621|ref|ZP_21689628.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
gi|445772608|gb|EMA23653.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
Length = 638
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/461 (26%), Positives = 217/461 (47%), Gaps = 34/461 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-----EIDPSAIDVLL 80
IT LG+ EVGR+ +S IL DCG P +G PY D + ID ++
Sbjct: 184 ITTLGSCREVGRAAFILSTPDTRILIDCGNKPGANGEK--PYLDIPEAFGAGTNGIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P E + G ++ T T+ + LL D++ + +D + +
Sbjct: 242 LTHAHLDHSALVPLLFEYG-YDGPIYCTEPTRDLMGLLTLDHLDTAADDGRTPPYDSEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ IK + AGH+LG+++ F V V ++GD ++
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDIKLTLHNAGHILGSSVCHFHVGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ +I + + G+VLIP F
Sbjct: 361 RLFDGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSERKLKQIIQNAYDRDGKVLIPTF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E N + +P++ + + AV+ TY + + ++++ +
Sbjct: 419 AVGRSQELMLVLEEAMRNG-DIPEMPVHLDG-MIWEATAVHTTYPEYLRDGLQDRIFDED 476
Query: 312 SNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +P++ D + +D S+++++ G L G + + D +
Sbjct: 477 ENPFLADQFNPIDGGDEERQEIADGDSSIILSTSGMLTGGPAMSWLEQLGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLMN---GLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL-- 421
GY +GTL K I EV + T PL M V + FS HAD F+K +
Sbjct: 537 GYQAQGTLGKRIQRGIDEVPVGGSGRSETVPLEMNVETVDGFSGHADRQGLENFVKTMNP 596
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P I+ VHG+ L + L D N + P+N ++
Sbjct: 597 RPEKILCVHGDESATQDLSSSLY---HDQNIRTFAPENLET 634
>gi|433590934|ref|YP_007280430.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|448334467|ref|ZP_21523642.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|448385409|ref|ZP_21563915.1| KH-domain/beta-lactamase-domain protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305714|gb|AGB31526.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|445619799|gb|ELY73316.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|445656904|gb|ELZ09736.1| KH-domain/beta-lactamase-domain protein [Haloterrigena
thermotolerans DSM 11522]
Length = 644
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 126/467 (26%), Positives = 221/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDMMGLLTLDYLDVAAKEGRSPPYESEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD ++
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E+ +VI+ T + G+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSERNLKEVINETYERDGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E N + ++P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMRNG-DIPSMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D P +++++ G + G D ++ V
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSSLVFV 536
Query: 368 GYVVEGTLAKTIISEPKEV---------TLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + E+ T LNM V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGNGGGRGTLSLNMNVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L E + + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSALYHEY---DMRTFAPKNLET 640
>gi|448726634|ref|ZP_21709028.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus morrhuae DSM 1307]
gi|445793964|gb|EMA44528.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus morrhuae DSM 1307]
Length = 636
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/468 (26%), Positives = 230/468 (49%), Gaps = 38/468 (8%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDP-SAI 76
+G+ + IT LG EVGR+ +S IL DCG P G PY E +P ++I
Sbjct: 178 DGEWVRITTLGCCREVGRASFILSTPETRILIDCGDKP---GSDDAPYLQVPEANPLNSI 234
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D +++TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D
Sbjct: 235 DAVVLTHAHLDHSALIP-LLFKYGYDGPIYTTEPTRDLMGLLQLDYLDVAAKEGRSPPYD 293
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYS 193
+ ++ +++ ++ +K + AGH+LG+A+ F + V ++GD
Sbjct: 294 SAMVREAVKHTIPIEYGDVTDIAPDVKLTMHNAGHILGSAVSHFHIGEGHYNVAFSGDIH 353
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVL 249
++ R A + P+ + ++ESTYG + + E+R ++I+ T +GG+VL
Sbjct: 354 YDDTRLFNGAVNDFPRV--ETLVMESTYGGRNDYKTDQADSEERLVEIINETADRGGKVL 411
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
+P+FA+GR+QE++L+L+E N + +P++ + + A++ TY + + +R++
Sbjct: 412 VPSFAVGRSQEIMLVLEEAMRNG-KIPEMPVHLDG-MIWEATAIHSTYPEYLRDDLRDRI 469
Query: 310 --ANSNPF---KFKHISPLNSIDDFSDVG---PSVVMASPGGLQSGLSRQLFDIWCSDKK 361
+ NPF +F HI D+ +V P++++++ G + G + +D
Sbjct: 470 FHDDENPFLAPQFNHID--EGEDEREEVAAGDPAIILSTSGMVTGGPIMSWLEHLGADPD 527
Query: 362 NACVIPGYVVEGTLAKTIISEPKEVTLMNGL----TAPLNMQVHYI-SFSAHADYAQTST 416
+ GY +GTL + I + E+ + G T L ++V + FS HAD
Sbjct: 528 STMTFVGYQAQGTLGRRIQNGWDEIPMNGGRGRSGTLNLELEVETVDGFSGHADRQGLEN 587
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F+K + P ++ VHG+ + + L + N + PKN ++
Sbjct: 588 FVKTMNPRPEKVLCVHGDEQSVQDFSSAL---YHNYNMRTFAPKNLET 632
>gi|73667742|ref|YP_303757.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
gi|72394904|gb|AAZ69177.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
Length = 637
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 132/469 (28%), Positives = 232/469 (49%), Gaps = 35/469 (7%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S IL DCG++ M Y E+ P + ID
Sbjct: 178 DQWVRVTSLGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDA 237
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH +P L K ++G V+ T T+ + LL DY+ V+ + + ++
Sbjct: 238 VIVTHAHLDHQGLVP-LLFKFGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESG 296
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ +++ LD+ + ++ IK + AGH+LG+A+ F + V++TGDY E
Sbjct: 297 MVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYE 356
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + + E+TYG QP E+ V+ +T+ +GG +IP
Sbjct: 357 KTRLFDPAVNKFPRV--ETVVSEATYGNSNAFQPSLKDAERHLQMVVKNTVERGGICIIP 414
Query: 252 AFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
AFA+GR+QE++++L+E PE +P+Y + + A++ T+ +N +R
Sbjct: 415 AFAVGRSQEVMIVLEESIRKGLIPE---VPVYLDG-MIWEATAIHATHPEYLNNDLRKLI 470
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF + P++S D + P V++++ G + G + F + + +N+
Sbjct: 471 FQKGQNPFLSECFKPVDSHDMRQKIIQNPHPCVIISTSGMMNGGPVMEYFKAFADEPRNS 530
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFL 418
V GY +GT+ + I KE+ + G T LNM+V + FS H+D Q ++
Sbjct: 531 LVFVGYQADGTIGRRIQKGWKEIPMTGKGGSTEILKLNMEVQVVDGFSGHSDRRQLMDYI 590
Query: 419 KELM--PPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
K + P + HG+ L + + +L T+ +T N ++V +
Sbjct: 591 KRMQPRPERVFTEHGDEKACVDLASSIYKKLK-IETRALT--NLETVRL 636
>gi|374262577|ref|ZP_09621142.1| hypothetical protein LDG_7561 [Legionella drancourtii LLAP12]
gi|363537030|gb|EHL30459.1| hypothetical protein LDG_7561 [Legionella drancourtii LLAP12]
Length = 452
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 218/456 (47%), Gaps = 53/456 (11%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGK-TILFDCGIHPAYSGMA-----ALPYFDEIDPSAIDVL 79
IT LGA V S +S+ K IL DCG+ + +LP+ DP ++ +
Sbjct: 3 ITFLGATETVTGSKYLLSFANKKNILLDCGLFQGEKELRLRNWHSLPF----DPKILNAV 58
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM------ 133
++TH H+DH LP L K FKG +F T TK + +LL D + + +
Sbjct: 59 ILTHAHIDHTGYLP-LLVKNGFKGPIFCTQGTKDLCDILLPDSAHLQEEDAKHANRHHYS 117
Query: 134 -------LFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVR 185
L+ +D +++ ++ VE +N I F AGH++GA++ + G
Sbjct: 118 KHNPALPLYTAKDAEKALKLFRPQPYNSVVELINEISFQFIPAGHIIGASLVRIQSEGKS 177
Query: 186 VLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRE--KRFTDVIHSTIS 243
+L+TGD R + +RA L Q + D + ESTYG +LH+ N ++ KR +I T
Sbjct: 178 LLFTGDLGRMNEPVMRAPTLVQQT-DYLVTESTYGDRLHEKDNPKDILKR---IIDKTYQ 233
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSM-N 302
+GG V+IPAFA+GR Q +L L E + NIPI+ SP MA+ T ILS +
Sbjct: 234 RGGSVIIPAFAVGRTQAILYYLSELKKEN-SLPNIPIFLDSP-----MAINATNILSKHS 287
Query: 303 ERIRNQFANSNPFKFKHI-----SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI-- 355
E +R + + I S SI S P +++ S G+ SG R LF +
Sbjct: 288 EDLR--LTKTECEELCKIATYVRSAEESIQIDSTKEPKIII-SASGMASG-GRILFHLRA 343
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQT 414
+ D +N + G+ GT +++ K++ + L P+N ++ I S SAHADYA+
Sbjct: 344 YAPDARNTILFTGFQARGTRGADMLNGIKQIKIHGDLI-PVNAEIDEIRSTSAHADYAEI 402
Query: 415 STFLKELMPPNI--ILVHGESHEMGRLKTKLMTELA 448
+LK P I + HGE LK K+ EL
Sbjct: 403 LQWLKHFDAPPIKTFITHGEPAAALSLKNKIEAELG 438
>gi|88602138|ref|YP_502316.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
gi|88187600|gb|ABD40597.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
Length = 629
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 130/459 (28%), Positives = 219/459 (47%), Gaps = 21/459 (4%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-SAIDVL 79
DQ I +T LG EVGR+ +S +L DCG P Y EI P S +D +
Sbjct: 176 DQWIRVTTLGCCREVGRAAFLLSTPESRVLIDCGEKPDSFEATPYLYVPEIHPLSQLDAV 235
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
++TH HLDH A +P L K ++G V+ T T+ + +L DY+ V + + + +
Sbjct: 236 VLTHAHLDHCAYIP-LLYKYGYEGPVYSTPPTRDLAAMLQLDYLDVVNKEGKPIPYSSNE 294
Query: 140 INRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGA--AMFMVDIAGVRVLYTGDYSREE 196
+ + VL++ ++ IK + AGH+LG+ A F V V +TGD +
Sbjct: 295 VKEYIKHSIVLNYGCVTDIAPDIKLTFHNAGHILGSGIAHFHVGDGLYNVAFTGDLHYGK 354
Query: 197 DRHLRAAELPQFSPDICIIESTYG-VQLHQP-RNIREKRFTDVIHSTISQGGRVLIPAFA 254
R AA + +ESTYG Q QP R E+R V + +GG+++IPAFA
Sbjct: 355 SRLFNAAVNHYPRLEALFMESTYGGAQDMQPNRADAEERLYGVFREVLERGGKIIIPAFA 414
Query: 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANS 312
+GR+QE++L ++E +F + +Y + K+ A++ TY +N +RN
Sbjct: 415 VGRSQEVMLAIEE-GMRLGKFPPVKVYLDG-MIKEATAIHTTYPEYLNSELRNLIFKEGH 472
Query: 313 NPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
NPF + ++S + V P V++ + G L G + +D++N V GY
Sbjct: 473 NPFLAECFEQVDSAEKRERVITGEPCVIITTSGMLNGGPVMEYLRNLAADERNCLVFVGY 532
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPP--NI 426
+GTL + I +E+ + N T +N+ + FS H+D Q F+ + P I
Sbjct: 533 QADGTLGRRIQKGWREIPIGNRETIVVNLDCITVDGFSGHSDRRQLMNFVSHMQPKPEKI 592
Query: 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+HG+ ++ L + + +L + + +P N ++ +
Sbjct: 593 FAIHGDENKTIDLASSIYKKL---HIQTTSPMNLETYRL 628
>gi|448322522|ref|ZP_21511992.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
amylolyticus DSM 10524]
gi|445601280|gb|ELY55269.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
amylolyticus DSM 10524]
Length = 644
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 127/467 (27%), Positives = 221/467 (47%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + ID ++
Sbjct: 184 ITTLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGAQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVASKEGRAPPYESEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD ++
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ DVI+ + G+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSERKLVDVINEAHDRDGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E + + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMRSG-KIPEMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI + D +D GP +++++ G + G D ++ V
Sbjct: 477 ENPFLAEQFNHIDAGEEERQDVADGGPCIILSTSGMVTGGPIMSWLSHLGPDPDSSLVFV 536
Query: 368 GYVVEGTLAKTIISEPKEV---------TLMNGLTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + E+ T LNM V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAAGNGGGRGTLSLNMNVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L D N + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSAL---YHDYNMRTFAPKNLET 640
>gi|448737127|ref|ZP_21719179.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus thailandensis JCM 13552]
gi|445804340|gb|EMA54597.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus thailandensis JCM 13552]
Length = 636
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 130/482 (26%), Positives = 235/482 (48%), Gaps = 42/482 (8%)
Query: 10 LKRRDAPVSRE---GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAAL 65
L+R + RE DQ + IT LG EVGR+ +S IL DCG P G
Sbjct: 164 LERVGRQIHREEMSDDQWVRITTLGCCREVGRASFILSTPETRILIDCGDKP---GSDDA 220
Query: 66 PYFD--EIDP-SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDY 122
PY E +P ++ID +++TH HLDH+A +P L K + G ++ T T+ + LL DY
Sbjct: 221 PYLQVPEANPLNSIDAVVLTHAHLDHSALIP-LLFKYGYDGPIYTTEPTRDLMGLLQLDY 279
Query: 123 VKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMV 179
+ V+ +D + ++ +++ ++ +K + AGH+LG+A+ F +
Sbjct: 280 LDVAAKEGRSPPYDSAMVREAVKHTIPIEYGDVTDIAPDVKLTMHNAGHILGSAVSHFHI 339
Query: 180 DIAGVRVLYTGDYSREEDRHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFT 235
V ++GD ++ R A + P+ + ++ESTYG + + E+R
Sbjct: 340 GEGHYNVAFSGDIHYDDTRLFNGAVNDFPRV--ETLVMESTYGGRNDYKTDQEDSEERLV 397
Query: 236 DVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ 295
++I+ T +GG+VL+P+FA+GR+QE++L+L+E N + +P++ + + A++
Sbjct: 398 EIINETADRGGKVLVPSFAVGRSQEIMLVLEEAMRNG-KIPEMPVHLDG-MIWEATAIHS 455
Query: 296 TYILSMNERIRNQF--ANSNPF---KFKHISPLNSIDDFSDVG---PSVVMASPGGLQSG 347
TY + + +R++ + NPF +F HI D+ +V P++V+++ G + G
Sbjct: 456 TYPEYLRDDLRDRIFHDDENPFLAPQFNHID--EGEDEREEVAAGDPAIVLSTSGMVTGG 513
Query: 348 LSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGL----TAPLNMQVHYI 403
+ +D + GY +GTL + I + E+ + G T L ++V +
Sbjct: 514 PIMSWLEHLGTDPDSTMTFVGYQAQGTLGRRIQNGWDEIPMNGGRGRSGTLNLELEVETV 573
Query: 404 -SFSAHADYAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNC 460
FS HAD F+K + P ++ VHG+ + + L + N + PKN
Sbjct: 574 DGFSGHADRQGLENFVKTMNPRPEKVLCVHGDEQSVQDFSSAL---YHNYNMRTFAPKNL 630
Query: 461 QS 462
++
Sbjct: 631 ET 632
>gi|448377860|ref|ZP_21560556.1| KH-domain/beta-lactamase-domain-containing protein [Halovivax
asiaticus JCM 14624]
gi|445655804|gb|ELZ08649.1| KH-domain/beta-lactamase-domain-containing protein [Halovivax
asiaticus JCM 14624]
Length = 645
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 127/468 (27%), Positives = 220/468 (47%), Gaps = 41/468 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
IT LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ITTLGCSREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ ++ + +
Sbjct: 242 LTHAHLDHSALIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYESEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E+ T+VI+ T + G+V+IPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQADSERNLTEVINETYERDGKVVIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMREG-DIPTMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHDD 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D D P +++++ G + G D +
Sbjct: 477 ENPFLAEQFNHIDGGEEERQDVVDGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLMN----------GLTAPLNMQVHYI-SFSAHADYAQTST 416
GY +GTL + I + E+ + + T LNM V + FS HAD A
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPVSDIGRHDNSGGGRGTLSLNMNVETVDGFSGHADRAGLEN 596
Query: 417 FLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
F+K + P ++ VHG+ + L + L D N + PKN ++
Sbjct: 597 FVKTMNPRPEKVLCVHGDERSVQDLSSAL---YHDYNMRTFAPKNLET 641
>gi|300121617|emb|CBK22135.2| unnamed protein product [Blastocystis hominis]
Length = 545
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 202/422 (47%), Gaps = 26/422 (6%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA----IDV 78
Q+ +T LG G +G+SC +S + +L DCG ALP F ++ S I
Sbjct: 2 QISLTVLGGGQSIGKSCFLLSVGDQHVLLDCGSFVGKDTKKALPDFSKLPKSMTVNDITA 61
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY--KLLLTDYVKVSKVSVEDMLFD 136
+LI+HFH+DH L Y E+ +KG ++ + T+A+ L + ++ V+ +
Sbjct: 62 VLISHFHMDHIGGLLYLTEQLKYKGDIYASSPTRAVLPLLLRNNRVLLTNQAQVQSTVTM 121
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E + I + ++++++N ++ + AGHVLGA M+ ++ G +LYTGD+S E
Sbjct: 122 ET-FAKLTKHIREVTVNESIQLNPNLRITAHIAGHVLGAVMWEIEAYGRSILYTGDFSDE 180
Query: 196 EDRHLRAAELPQ--FSP---DICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
+ + +LP P D+ I+E TYG + R+ D + STI G+VLI
Sbjct: 181 PGGFIPSYQLPARFLRPGNLDMLIMECTYGNTEFKSYEDRKNTLLDSVLSTIQNRGKVLI 240
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P + +G QELL + + W++ + PIY++S K + ++ Y + + Q
Sbjct: 241 PCYGIGHTQELLAMFLDLWNS--KNLTTPIYFSSQDTKSTLPLFSYYSSWTSHPLSLQSD 298
Query: 311 NSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYV 370
PF+ + + P ++ A+ + SG+S+ +F + KN + G
Sbjct: 299 RIQPFRMEFAASEE---------PFLLFATHPTMTSGVSKAVFPSIAGNPKNMVIFLGQN 349
Query: 371 VEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430
T+A I++ P VTL +G P+ Q + FSAH D ++ ++L+H
Sbjct: 350 SPDTIAGQIMNSP-AVTL-DGKNIPVLCQRKIVPFSAHPDRKANCRLIERTGASCVVLIH 407
Query: 431 GE 432
G+
Sbjct: 408 GD 409
>gi|448689042|ref|ZP_21694779.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
gi|445778912|gb|EMA29854.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
Length = 638
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 124/461 (26%), Positives = 216/461 (46%), Gaps = 34/461 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD-----EIDPSAIDVLL 80
IT LG EVGR+ +S IL DCG P +G PY D + ID ++
Sbjct: 184 ITTLGCCREVGRAAFILSTPDTRILIDCGNKPGANGEQ--PYLDIPEAFGAGTNGIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P E + G ++ T T+ + LL DY+ + +D + +
Sbjct: 242 LTHAHLDHSALVPLLFEYG-YDGPIYCTEPTRDLMGLLTLDYLDTAADDGRTPPYDSEMV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ IK + AGHVLG+++ F V V ++GD ++
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDIKLTLHNAGHVLGSSVCHFHVGDGLYNVAFSGDIHYDDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ ++ + + G+VLIP F
Sbjct: 361 RLFDGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSERKLKQIVQNAYDRDGKVLIPTF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QEL+L+L+E N + +P++ + + AV+ TY + + ++++ +
Sbjct: 419 AVGRSQELMLVLEEAMRNG-DIPEMPVHLDG-MIWEATAVHTTYPEYLRDGLQDRIFDED 476
Query: 312 SNPFKFKHISPLNSID----DFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +P++ D + +D ++++++ G L G + + D +
Sbjct: 477 KNPFLADQFNPIDGGDEERQEIADGESAIILSTSGMLTGGPAMSWLEHLGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIISEPKEVTLMN---GLTAPLNMQVHYI-SFSAHADYAQTSTFLKEL-- 421
GY +GTL K I EV + T PL M V + FS HAD F+K +
Sbjct: 537 GYQAQGTLGKRIQRGIDEVPVGGSGRSETVPLEMDVETVDGFSGHADRQGLENFVKTMNP 596
Query: 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
P I+ VHG+ L + L D N + P+N ++
Sbjct: 597 RPEKILCVHGDESATQDLSSSL---YHDQNIRTFAPENLET 634
>gi|336252222|ref|YP_004595329.1| KH-domain/beta-lactamase-domain-containing protein [Halopiger
xanaduensis SH-6]
gi|335336211|gb|AEH35450.1| KH-domain/beta-lactamase-domain protein [Halopiger xanaduensis
SH-6]
Length = 644
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 128/467 (27%), Positives = 219/467 (46%), Gaps = 40/467 (8%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEID-----PSAIDVLL 80
I+ LG EVGR+ +S IL DCG P G +PY + P ID ++
Sbjct: 184 ISTLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVV 241
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDI 140
+TH HLDH+A +P L K + G ++ T T+ + LL DY+ V+ +D + +
Sbjct: 242 LTHAHLDHSAFIP-LLFKYGYDGPIYCTEPTRDLMGLLTLDYLDVAAKEGRTPPYDSEQV 300
Query: 141 NRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSREED 197
++ L++ ++ +K + AGH+LG+A+ F + V ++GD E+
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYEDT 360
Query: 198 RHLRAA--ELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
R A + P+ + ++ESTYG + + E++ VI+ +GG+VLIPAF
Sbjct: 361 RLFNGAVNDFPRV--ETLVLESTYGGRNDYQTDQEDSEEKLKRVINEAYDRGGKVLIPAF 418
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--AN 311
A+GR+QE++L+L+E + +P++ + + A++ TY + + +R++ +
Sbjct: 419 AVGRSQEIMLVLEEAMREG-DIPEMPVHLDG-MIWEATAIHTTYPEYLRDDLRDRIFHED 476
Query: 312 SNPF---KFKHI-SPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
NPF +F HI D +D P +++++ G + G D +
Sbjct: 477 ENPFLADEFNHIDGGEEERQDVADGEPCIILSTSGMVTGGPIMSWLSHIGPDPDSTLTFV 536
Query: 368 GYVVEGTLAKTIIS-----EPKEVTLMNG----LTAPLNMQVHYI-SFSAHADYAQTSTF 417
GY +GTL + I + EV M G T LNM V + FS HAD A F
Sbjct: 537 GYQAQGTLGRRIQNGWDEIPTSEVGAMGGDNGRGTLSLNMHVETVDGFSGHADRAGLENF 596
Query: 418 LKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQS 462
+K + P ++ VHG+ L + L + + + PKN ++
Sbjct: 597 VKTMNPRPEKVLCVHGDERSTQDLSSAL---YHNYDMRTFAPKNLET 640
>gi|451946223|ref|YP_007466818.1| metallo-beta-lactamase and RNA-binding KH domain-containing
putative metal-dependent RNase [Desulfocapsa sulfexigens
DSM 10523]
gi|451905571|gb|AGF77165.1| metallo-beta-lactamase and RNA-binding KH domain-containing
putative metal-dependent RNase [Desulfocapsa sulfexigens
DSM 10523]
Length = 469
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/465 (26%), Positives = 222/465 (47%), Gaps = 37/465 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA-ALPYFDEIDPSAIDVLLITHF 84
IT GA V S + L DCG++ + + + +D ++++H
Sbjct: 3 ITFQGAAKTVTGSKFLIEVNNSRFLLDCGLYQGKRKDSFEMNRETSCNSDTLDAIVLSHA 62
Query: 85 HLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE------------- 131
H+DH+ ++P + K F+G +F T AT+ + ++L D + + VE
Sbjct: 63 HIDHSGNIPCHV-KNGFQGDIFCTSATRDLCAVMLLDSAFLQEKDVEYVNRKRERDGKKP 121
Query: 132 -DMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGV----- 184
+ L+ ++D SM + +++ ++ G++ AGH+LG+A ++DI +
Sbjct: 122 FEPLYTKKDAVASMQYFVGMSYNRKRQILPGVELTLVDAGHMLGSAHVILDIEDMDSGRK 181
Query: 185 -RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTIS 243
R++++GD R +R + DI I+ESTYG + H P E+ +++ T++
Sbjct: 182 TRLVFSGDIGRANIPIIRDPQPITQGADILIMESTYGNRTHPPYPESERELKRIVNETVA 241
Query: 244 QGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE 303
+GG +LIPAFA+GR Q+++ L + + N E ++PIY SPLA + +++ + + +E
Sbjct: 242 RGGSLLIPAFAVGRTQQIVYTLHKLFVNG-EIPDVPIYVDSPLATRTTDIFRLHPETYDE 300
Query: 304 RIRNQF----ANSNPFKFKHISPLNSIDDFSDVG----PSVVMASPGGLQSGLSRQLFDI 355
I QF N+NPF F+ + +S+D+ ++ P++++++ G ++ G
Sbjct: 301 EIM-QFMLEDKNNNPFGFETLKYTSSVDESKNLSSSDKPAIIISASGMMEGGRILHHLKS 359
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYIS-FSAHADYAQT 414
+ KN +I G+ TL + I+ KEV + G + +V ++ FS HAD +
Sbjct: 360 RAGNPKNTILITGWQAPFTLGRQIVDGKKEVKIF-GELYDIRAKVELVTGFSGHADREEL 418
Query: 415 STFLK--ELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITP 457
+ E P +VHGE L T L L I P
Sbjct: 419 LAWAGAMEKKPTQTFIVHGEEESANALATALHDTLGFKTVHIPNP 463
>gi|389860743|ref|YP_006362983.1| beta-lactamase [Thermogladius cellulolyticus 1633]
gi|388525647|gb|AFK50845.1| beta-lactamase domain protein [Thermogladius cellulolyticus 1633]
Length = 424
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 126/445 (28%), Positives = 216/445 (48%), Gaps = 40/445 (8%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG G EVGR+ + + G+ L D GI+ +P + P+ + ++ I+H HLDH
Sbjct: 7 LGGGREVGRAAILVE-DGEKALLDYGINFDDKDRPQMPL--HVRPADLSLIAISHAHLDH 63
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIE 148
+ P L T + R++MT T I +LL+ D++K++ V+V+ ++ + + D +
Sbjct: 64 IGAAP--LMYITGRPRIYMTRPTIEIARLLVLDFLKLNAVNVD---YEYSEFVKMSDNAQ 118
Query: 149 VLDFHQTVEVNGIKFWCYTAGHVLGA-AMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQ 207
+D+ VE K AGH+LG+ A+++ +G R+LYTGD + + L AEL
Sbjct: 119 FVDYGAEVEAGSFKLIFMNAGHILGSTAIYVETRSGHRILYTGDINTVQTWTLSGAELWP 178
Query: 208 FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267
D I E+TYG ++H PR EKRF V+ IS GG VL+P+F++GR+QE+L +L
Sbjct: 179 VKVDTLITEATYGDRVHPPRYRVEKRFVSVVEEVISSGGVVLVPSFSVGRSQEVLTLL-- 236
Query: 268 YWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSID 327
+N + +I Y +A++ +Y Y + +R+ + + ++ + ++
Sbjct: 237 --ANELPYVDI---YVDGMAREICGIYLNY----QKYLRDPSLYTR--ALERVTFVKNVR 285
Query: 328 DFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
D P V++A+ G L+ G S Q D KNA ++ Y + ++ +
Sbjct: 286 DRKKALKSPGVIIATAGMLKGGPSLQYLKKLADDPKNAVLLVSYQSPNSPGHKLLEKGGL 345
Query: 386 VTLMNGLTAPLNMQVHYISFSAHA------DYAQTSTFLKELMPPNIILVHGESHEMGRL 439
+ T +V + FS+HA D A+T + N+++VHG+ L
Sbjct: 346 EEIGVYFT---KARVEWFDFSSHAGRDGLVDIAKTYSHTLR----NVVIVHGDEESSKGL 398
Query: 440 KTKLMTELA-DCNTKIITPKNCQSV 463
+ L D N I P N S+
Sbjct: 399 ANAIRESLGKDLN--IYVPNNGDSI 421
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,109,206,967
Number of Sequences: 23463169
Number of extensions: 340096260
Number of successful extensions: 785092
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2596
Number of HSP's successfully gapped in prelim test: 3338
Number of HSP's that attempted gapping in prelim test: 767233
Number of HSP's gapped (non-prelim): 8311
length of query: 525
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 378
effective length of database: 8,910,109,524
effective search space: 3368021400072
effective search space used: 3368021400072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)