BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044504
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 289/453 (63%), Positives = 357/453 (78%), Gaps = 3/453 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYF 467
RLK L+ E D + ++ P+N ++V + F
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNF 458
>pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
Length = 651
Score = 198 bits (503), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 141/466 (30%), Positives = 233/466 (50%), Gaps = 32/466 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMAALPYFDE------IDPSAID 77
IT LG EVGRS + + +L D G++ A A P+FD + +D
Sbjct: 191 ITGLGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLD 250
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
++ITH HLDH LPY F G ++ T T+ + LL D++++ + + +D L+
Sbjct: 251 AIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRP 310
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGV--RVLYTGDYSR 194
+DI + LD+ + +++ I+ + AGH+LG+A+ + I + TGD+
Sbjct: 311 RDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDFKF 370
Query: 195 EEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
R L A + ++ESTYG + PR EKR +VIH+TI +GG+VLIPA
Sbjct: 371 IPTRLLEPANAKFPRLETLVMESTYGGANDIQMPREEAEKRLIEVIHNTIKRGGKVLIPA 430
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS 312
A+GRAQE++++L+EY +PIY + + A++ Y ++ R+R Q
Sbjct: 431 MAVGRAQEVMMVLEEYARIG--GIEVPIYLDG-MIWEATAIHTAYPEYLSRRLREQIFKE 487
Query: 313 --NPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
NPF + P+ + + D+ P++++AS G L G S + F D KN+ +
Sbjct: 488 GYNPFLSEIFHPVANSRERQDIIDSNEPAIIIASSGMLVGGPSVEYFKQLAPDPKNSIIF 547
Query: 367 PGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLKEL 421
Y EGTL + + S +E+ ++ G T +NM+VH I FS HAD + ++ ++
Sbjct: 548 VSYQAEGTLGRQVQSGIREIPMVGEEGRTEVIKVNMEVHTIDGFSGHADRRELMNYVAKV 607
Query: 422 --MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
P II VHGE + L T + + +T+ P N ++ +
Sbjct: 608 RPRPERIITVHGEPQKCLDLATSIHRKFG-ISTR--APNNLDTIRL 650
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 139/469 (29%), Positives = 240/469 (51%), Gaps = 32/469 (6%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFD--EIDPSAI 76
+ D +T +G EVGRSC+Y+ +L DCG++ A + PY + E ++
Sbjct: 176 DNDWARLTAMGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLDSL 235
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFD 136
D ++ITH HLDH+ LPY L + G V+ T T+ + LL D++ ++ E + F+
Sbjct: 236 DAVIITHAHLDHSGFLPY-LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFN 294
Query: 137 EQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVR--VLYTGDYS 193
+ + +S+ LD+ + ++ I+ + AGH+LG+AM + I + ++YTGD+
Sbjct: 295 VKHVKKSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFK 354
Query: 194 REEDRHLRAA--ELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVL 249
E+ R L AA P+ + ++ESTYG + RN EK I+ST+ +GG++L
Sbjct: 355 YEQSRLLEAAANRFPRI--ETLVMESTYGGHEDVQPSRNRAEKELVKTIYSTLRRGGKIL 412
Query: 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
IP FA+GRAQEL+++L+EY +P+Y + + A++ +++ +R+Q
Sbjct: 413 IPVFAVGRAQELMIVLEEYIRTGI-IDEVPVYIDG-MIWEANAIHTARPEYLSKDLRDQI 470
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV---GPSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF +N +D+ ++ PS+++++ G L G S + F C D N+
Sbjct: 471 FHMGHNPFISDIFHKVNGMDERREIVEGEPSIILSTSGMLTGGNSLEYFKWLCEDPDNSL 530
Query: 365 VIPGYVVEGTLAKTIISEPKEVTL------MNGLTAPLNMQVHYISFSAHADYAQTSTFL 418
V GY EG+L + I KE+ L M +N++ FS H+D Q ++
Sbjct: 531 VFVGYQAEGSLGRRIQKGWKEIPLKDEDDKMRVYNVRMNIKT-IEGFSGHSDRRQLMEYV 589
Query: 419 KEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
K + P I+L HG++++ L + + TK TP N ++V +
Sbjct: 590 KRISPKPEKILLCHGDNYKTLDLASSIYRTYR-IETK--TPLNLETVRI 635
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
Length = 431
Score = 194 bits (494), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 202/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 199/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGXFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV ++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLXEIVLEDALKVX----DEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPXAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPXVVLAGSGXLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQ--GEPRVVLVHGEE 403
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + F HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFQGHAGQDELLDWLQG--EPRVVLVHGEE 403
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 192 bits (488), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + F HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFYGHAGQDELLDWLQG--EPRVVLVHGEE 403
>pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|B Chain B, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|C Chain C, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|D Chain D, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 191 bits (485), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAA 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 191 bits (485), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS A + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGAAGQDELLDWLQG--EPRVVLVHGEE 403
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 190 bits (483), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/414 (30%), Positives = 201/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LV GE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVVGEE 403
>pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 129/425 (30%), Positives = 214/425 (50%), Gaps = 30/425 (7%)
Query: 22 DQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-SGMAALPYFDEIDP-SAIDV 78
DQ + +T LG EVGRSC +S IL DCG++ M Y E+ P + ID
Sbjct: 181 DQWVRVTALGGCKEVGRSCFLLSTPESRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDA 240
Query: 79 LLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
+++TH HLDH +P L K ++G V+ T T+ + LL DY+ V+ + + ++
Sbjct: 241 VIVTHAHLDHQGLVP-LLFKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESG 299
Query: 139 DINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAM--FMVDIAGVRVLYTGDYSRE 195
+ +++ LD+ + ++ IK + AGH+LG+A+ F + V++TGDY E
Sbjct: 300 MVAKTLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYE 359
Query: 196 EDRHLRAA--ELPQFSPDICIIESTYG-VQLHQPR-NIREKRFTDVIHSTISQGGRVLIP 251
+ R A + P+ + I E+TYG QP EK V+ +TI +GG +IP
Sbjct: 360 KTRLFDPAVNKFPRV--ETVISEATYGNANAFQPALKDAEKHLQMVVKNTIERGGIAVIP 417
Query: 252 AFALGRAQELLLILDEYWSNH--PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
AFA+GR+QE++++L+E PE +P+Y + + A++ T+ +N +R
Sbjct: 418 AFAVGRSQEVMIVLEESIRKGLIPE---VPVYLDG-MIWEATAIHATHPEYLNNDLRKLI 473
Query: 310 --ANSNPFKFKHISPLNSIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
NPF + P++S + + P V++A+ G + G + F + D +N
Sbjct: 474 FQKGQNPFLSECFKPVDSHEARQKIIQNPQPCVILATSGMMNGGPVMEYFKAFAEDPRNT 533
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTLM--NGLTAPL--NMQVHYI-SFSAHADYAQTSTFL 418
V GY +GT+ + I KE+ + NG T L NM+V + FS H+D Q ++
Sbjct: 534 LVFVGYQADGTIGRRIQKGWKEIPMTGKNGSTEMLKMNMEVQVVDGFSGHSDRRQLMEYV 593
Query: 419 KELMP 423
K + P
Sbjct: 594 KRMQP 598
>pdb|2I7X|A Chain A, Structure Of Yeast Cpsf-100 (Ydh1p)
Length = 717
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 106/253 (41%), Gaps = 25/253 (9%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPA-YSGMAALPYFDEIDPSAIDVLLITHFHLD- 87
G+G VG + + T+L D G +P+ S + Y++++ P IDV++++ ++
Sbjct: 11 GSGTTVGS---VVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPE-IDVIILSQPTIEC 66
Query: 88 -HAASLPYFLEKTTFKGRVFMTHATKAIYKL----LLTDYVKVSKVSVEDM-LFDEQDIN 141
A SL Y+ + F R+ +AT + L + Y + D D +DI
Sbjct: 67 LGAHSLLYYNFTSHFISRI-QVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIE 125
Query: 142 RSMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
S D I L + Q V++ +G+ Y AG G +++ + +++Y ++ D
Sbjct: 126 ISFDHIVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYSEKLVYAKRWNHTRD 185
Query: 198 RHLRAAE--------LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVL 249
L AA L II + QP R K F D + +S G V+
Sbjct: 186 NILNAASILDATGKPLSTLMRPSAIITTLDRFGSSQPFKKRSKIFKDTLKKGLSSDGSVI 245
Query: 250 IPAFALGRAQELL 262
IP G+ +L
Sbjct: 246 IPVDMSGKFLDLF 258
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
SR+ ++P+G Y+ KT LFD + Y G IDP ID
Sbjct: 20 SRDFHGYTLSPMGTTYNA-----YLVEDEKTTLFDT-VKAEYKGELLCGIASVIDPKKID 73
Query: 78 VLLITHFHLDHAASLPYFLE 97
L+I H LDHA +LP +E
Sbjct: 74 YLVIQHLELDHAGALPALIE 93
>pdb|3ZQ4|A Chain A, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|C Chain C, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|D Chain D, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|E Chain E, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
Length = 555
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPY------FDEIDPSA 75
DQ + LG E+G++ + ++ + +L D GI + + Y + +
Sbjct: 7 DQTAVFALGGLGEIGKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDK 66
Query: 76 IDVLLITHFHLDHAASLPYFLEKTTF 101
I L ITH H DH +PY L +
Sbjct: 67 IKGLFITHGHEDHIGGIPYLLRQVNI 92
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 31/155 (20%)
Query: 48 TILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFM 107
T+ D G+ + +A + D++D +++TH H+DH LP L+ +K +V +
Sbjct: 31 TVXIDAGVS---NSIADFSFLDKLD-----YIVLTHLHIDHIGLLPELLQ--VYKAKVLV 80
Query: 108 THATKAIYKLLLT--DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFW- 164
K+ +K LT D +K S E +L D + ++K LD + +EV G + +
Sbjct: 81 ----KSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEK--KLDQDKVIEVEGNEEFD 134
Query: 165 --------CYTAGHVLGAAMFMVDIAGVRVLYTGD 191
YT GH +VD L+TGD
Sbjct: 135 LGGYRXRLIYTPGHARHHXSVLVD----DFLFTGD 165
>pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J
pdb|3BK2|A Chain A, Crystal Structure Analysis Of The Rnase JUMP COMPLEX
Length = 562
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAA----LPYFDEI--DPSA 75
D + I PLG E+G++ ++ + + D G+ G +P D +
Sbjct: 15 DHVEIIPLGGXGEIGKNITVFRFRDEIFVLDGGLAFPEEGXPGVDLLIPRVDYLIEHRHK 74
Query: 76 IDVLLITHFHLDHAASLPYFL 96
I ++TH H DH LP+ L
Sbjct: 75 IKAWVLTHGHEDHIGGLPFLL 95
>pdb|4GCW|A Chain A, Crystal Structure Of Rnase Z In Complex With Precursor
Trna(Thr)
Length = 320
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 28 PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
P A N + + + LFDCG + + I P I+ + ITH H D
Sbjct: 13 PAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTT-----IKPRKIEKIFITHMHGD 67
Query: 88 HAASLPYFLEKTTFKG 103
H LP L +F+G
Sbjct: 68 HVYGLPGLLGSRSFQG 83
>pdb|1Y44|A Chain A, Crystal Structure Of Rnase Z
pdb|1Y44|B Chain B, Crystal Structure Of Rnase Z
Length = 320
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 28 PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
P A N + + + LFDCG + + I P I+ + ITH H D
Sbjct: 13 PAKARNVTSVALKLLEERRSVWLFDCGEATQHQXLHTT-----IKPRKIEKIFITHXHGD 67
Query: 88 HAASLPYFLEKTTFKG 103
H LP L +F+G
Sbjct: 68 HVYGLPGLLGSRSFQG 83
>pdb|3T3N|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Uuccgu) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
pdb|3T3O|A Chain A, Molecular Basis For The Recognition And Cleavage Of Rna
(Cugg) By The Bifunctional 5'-3' ExoENDORIBONUCLEASE
RNASE J
Length = 562
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA------ 75
D + I PLG E+G++ ++ + + D G+ GM P D + P
Sbjct: 16 DHVEIIPLGGMGEIGKNITVFRFRDEIFVLDGGLAFPEEGM---PGVDLLIPRVDYLIEH 72
Query: 76 ---IDVLLITHFHLDHAASLPYFL 96
I ++TH DH LP+ L
Sbjct: 73 RHKIKAWVLTHGAEDHIGGLPFLL 96
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 38 SCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE--IDPSAIDVLLITHFHLDHAASLPYF 95
+ VY+ +K + I+ D G + + F E I P I +L TH HLDH + F
Sbjct: 36 TVVYLEHKDRRIIIDPGNLSSXDELEE--KFSELGISPDDITDVLFTHVHLDHIFNSVLF 93
Query: 96 LEKT-----TFKGRVFMTHAT--KAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
T +K + +++ T IY +++ + V + E+ LFDE+
Sbjct: 94 ENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEK 143
>pdb|3ESH|A Chain A, Crystal Structure Of A Probable Metal-Dependent Hydrolase
From Staphylococcus Aureus. Northeast Structural
Genomics Target Zr314
pdb|3ESH|B Chain B, Crystal Structure Of A Probable Metal-Dependent Hydrolase
From Staphylococcus Aureus. Northeast Structural
Genomics Target Zr314
pdb|3ESH|C Chain C, Crystal Structure Of A Probable Metal-Dependent Hydrolase
From Staphylococcus Aureus. Northeast Structural
Genomics Target Zr314
Length = 280
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED 132
P ID +L TH H DHAA L T G +A + + +++ + +
Sbjct: 98 PKDIDYVLXTHXHFDHAAGL------TDQAGHAIFENAIHVVQQDEWHEFI-APNIRSKS 150
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVE-VNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGD 191
+D+ N+ +++ F + E V GIK ++ GH G + ++ G + ++ GD
Sbjct: 151 TYWDK---NKGDYSNKLILFEKHFEPVPGIKX-QHSGGHSFGHTIITIESQGDKAVHXGD 206
>pdb|4B87|A Chain A, Crystal Structure Of Human Dna Cross-Link Repair 1a
Length = 367
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 35/193 (18%)
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQD 139
+THFH DH A L H T +Y +T + +K+ V++
Sbjct: 56 FLTHFHSDHYAGLS--------------KHFTFPVYCSEITGNLLKNKLHVQEQY----- 96
Query: 140 INRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIA-GVRVLYTGDYSREE-- 196
I L VNG+K A H GA M + + G +L+TGD+ +
Sbjct: 97 -------IHPLPLDTECIVNGVKVVLLDANHCPGAVMILFYLPNGTVILHTGDFRADPSM 149
Query: 197 DRHLRAAE---LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
+R L A + + C E T+ Q R F V T++ V+ +
Sbjct: 150 ERSLLADQKVHMLYLDTTYCSPEYTFPSQQEVIRFAINTAFEAV---TLNPHALVVCGTY 206
Query: 254 ALGRAQELLLILD 266
++G+ + L I D
Sbjct: 207 SIGKEKVFLAIAD 219
>pdb|3ZWF|A Chain A, Crystal Structure Of Human Trnase Z, Short Form (Elac1).
pdb|3ZWF|B Chain B, Crystal Structure Of Human Trnase Z, Short Form (Elac1)
Length = 368
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 36 GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYF 95
G S V + +G+ LFDCG G ++ I + ITH H DH LP
Sbjct: 18 GASAVVLRCEGECWLFDCG-----EGTQTQLMKSQLKAGRITKIFITHLHGDHFFGLPGL 72
Query: 96 LEKTTFKGRVFMTHATKAIYKLL-LTDYV-KVSKVSVEDMLF 135
L + + ++ IY + L D++ + ++S +++F
Sbjct: 73 LCTISLQSGSMVSKQPIEIYGPVGLRDFIWRTMELSHTELVF 114
>pdb|3ILR|A Chain A, Structure Of Heparinase I From Bacteroides
Thetaiotaomicron In Complex With Tetrasaccharide Product
Length = 370
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGG---LQSGLSRQLFDI--- 355
+E++ NP K K+ P+ + P+ + GG L G S LF I
Sbjct: 183 HEKVARLDKQGNPVKDKNGKPV-----YKAGKPNGWLVEQGGYPPLAFGFSGGLFYIKAN 237
Query: 356 ----WCSDKKNAC-VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
W +DK + C PG + + K + SE K T+ L + +I+F H D
Sbjct: 238 SDRKWLTDKDDRCNANPG---KTPVMKPLTSEYKASTIAYKLPFADFPKDCWITFRVHID 294
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKN 459
+ + ++ P ++ V + E G+ +K + + N KI+ +N
Sbjct: 295 WTVYGKEAETIVKPGMLDVRMDYQEQGKKVSKHIVD----NEKILIGRN 339
>pdb|3IKW|A Chain A, Structure Of Heparinase I From Bacteroides
Thetaiotaomicron
Length = 374
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 23/169 (13%)
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGG---LQSGLSRQLFDI--- 355
+E++ NP K K+ P+ + P+ + GG L G S LF I
Sbjct: 187 HEKVARLDKQGNPVKDKNGKPV-----YKAGKPNGWLVEQGGYPPLAFGFSGGLFYIKAN 241
Query: 356 ----WCSDKKNAC-VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHAD 410
W +DK + C PG + + K + SE K T+ L + +I+F H D
Sbjct: 242 SDRKWLTDKDDRCNANPG---KTPVMKPLTSEYKASTIAYKLPFADFPKDCWITFRVHID 298
Query: 411 YAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKN 459
+ + ++ P ++ V + E G+ +K + + N KI+ +N
Sbjct: 299 WTVYGKEAETIVKPGMLDVRMDYQEQGKKVSKHIVD----NEKILIGRN 343
>pdb|2FK6|A Chain A, Crystal Structure Of Rnase ZTRNA(THR) COMPLEX
Length = 320
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 28 PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
P A N + + + LFDCG + + I P I+ + ITH D
Sbjct: 13 PAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHTT-----IKPRKIEKIFITHMAGD 67
Query: 88 HAASLPYFLEKTTFKG 103
H LP L +F+G
Sbjct: 68 HVYGLPGLLGSRSFQG 83
>pdb|2Q0J|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
pdb|2Q0J|B Chain B, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 321
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 72 DPSAIDVLLITHFHLDHAASLPYF 95
DPS + LITH H DH LPY
Sbjct: 78 DPSQVHYWLITHKHYDHCGLLPYL 101
>pdb|2VW8|A Chain A, Crystal Structure Of Quinolone Signal Response Protein
Pqse From Pseudomonas Aeruginosa
Length = 303
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 72 DPSAIDVLLITHFHLDHAASLPYF 95
DPS + LITH H DH LPY
Sbjct: 60 DPSQVHYWLITHKHYDHCGLLPYL 83
>pdb|2Q0I|A Chain A, Structure Of Pseudomonas Quinolone Signal Response
Protein Pqse
Length = 303
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 72 DPSAIDVLLITHFHLDHAASLPYF 95
DPS + LITH H DH LPY
Sbjct: 60 DPSQVHYWLITHKHYDHCGLLPYL 83
>pdb|3DH8|A Chain A, Structure Of Pseudomonas Quinolone Signal Response
Protein Pqse
Length = 303
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 72 DPSAIDVLLITHFHLDHAASLPYF 95
DPS + LITH H DH LPY
Sbjct: 60 DPSQVHYWLITHKHYDHCGLLPYL 83
>pdb|1ZKP|A Chain A, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|B Chain B, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|C Chain C, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|D Chain D, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
Length = 268
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Query: 42 MSYKGKTILFDCGIHPAYSG-MAALPYFDEIDPSAIDVLLITHFHLDHAASL 92
+ G +L DCG SG +A L + I PS ID ++++H+H DH A +
Sbjct: 48 FEHDGFRLLVDCG-----SGVLAQLQKY--ITPSDIDAVVLSHYHHDHVADI 92
>pdb|2CBN|A Chain A, Crystal Structure Of Zipd From Escherichia Coli
Length = 306
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Query: 50 LFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKG 103
LFDCG G +P +D + I+H H DH LP L + G
Sbjct: 37 LFDCG-----EGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSG 85
>pdb|3AJ3|A Chain A, Crystal Structure Of Selenomethionine Substituted
4-Pyridoxolactonase From Mesorhizobium Loti
Length = 274
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 71 IDPSAIDVLLITHFHLDHAASLPYF 95
++P IDV++ +HFH DH YF
Sbjct: 84 LEPRDIDVVVNSHFHFDHCGGNKYF 108
>pdb|3AJ0|A Chain A, Crystal Structure Of 4-Pyridoxolactonase From
Mesorhizobium Loti
Length = 268
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 71 IDPSAIDVLLITHFHLDHAASLPYF 95
++P IDV++ +HFH DH YF
Sbjct: 84 LEPRDIDVVVNSHFHFDHCGGNKYF 108
>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 530
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 145 DKIEVLDFHQTVEVN---GIKFWCYTAG-HVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
D+ ++ + ++V+ N G + + + G HVL AA + G V+ G YSRE R +
Sbjct: 278 DQSKLPWYSKSVDSNYLTGKRVFIFGDGTHVLAAARIANEELGFEVVGIGTYSREMARKV 337
Query: 201 RAA 203
RAA
Sbjct: 338 RAA 340
>pdb|4E4Y|A Chain A, The Crystal Structure Of A Short Chain Dehydrogenase
Family Protein From Francisella Tularensis Subsp.
Tularensis Schu S4
Length = 244
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR 185
S E++ F + D+ + D VLD + V +GI AG ++ ++F +DI ++
Sbjct: 42 SAENLKFIKADLTKQQDITNVLDIIKNVSFDGI---FLNAGILIKGSIFDIDIESIK 95
>pdb|2R2D|A Chain A, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|B Chain B, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|C Chain C, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|D Chain D, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|E Chain E, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|F Chain F, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
Length = 276
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 22/70 (31%)
Query: 48 TILFDCGIHPAYSGMAA---------LPYFDE-------------IDPSAIDVLLITHFH 85
T+L+D G HP G PY + P I ++++H H
Sbjct: 54 TVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLH 113
Query: 86 LDHAASLPYF 95
DHA + YF
Sbjct: 114 NDHAGCVEYF 123
>pdb|3INA|A Chain A, Crystal Structure Of Heparin Lyase I H151a Mutant
Complexed With A Dodecasaccharide Heparin
Length = 378
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 17/165 (10%)
Query: 303 ERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI------- 355
E++ NP K K+ P+ + G V L G S LF I
Sbjct: 190 EKVVRLDKQGNPMKDKNGKPVYKAGKLN--GWLVEQGGYPPLAFGFSGGLFYIKANSDRK 247
Query: 356 WCSDKKNAC-VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQT 414
W +DK + C PG + + K + SE K T+ L + +I+F H D+
Sbjct: 248 WLTDKDDRCNANPG---KTPVMKPLTSEYKASTIAYKLPFADFPKDCWITFRVHIDWTVY 304
Query: 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKN 459
+ ++ P ++ V + E G+ +K + N KI+ +N
Sbjct: 305 GKEAETIVKPGMLDVRMDYQEQGKKVSKHIVN----NEKILIGRN 345
>pdb|3IMN|A Chain A, Crystal Structure Of Heparin Lyase I From Bacteroides
Thetaiotaomicron
pdb|3IN9|A Chain A, Crystal Structure Of Heparin Lyase I Complexed With
Disaccharide Heparin
Length = 378
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 66/166 (39%), Gaps = 17/166 (10%)
Query: 302 NERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDI------ 355
+E++ NP K K+ P+ + G V L G S LF I
Sbjct: 189 HEKVVRLDKQGNPMKDKNGKPVYKAGKLN--GWLVEQGGYPPLAFGFSGGLFYIKANSDR 246
Query: 356 -WCSDKKNAC-VIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQ 413
W +DK + C PG + + K + SE K T+ L + +I+F H D+
Sbjct: 247 KWLTDKDDRCNANPG---KTPVMKPLTSEYKASTIAYKLPFADFPKDCWITFRVHIDWTV 303
Query: 414 TSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKN 459
+ ++ P ++ V + E G+ +K + N KI+ +N
Sbjct: 304 YGKEAETIVKPGMLDVRMDYQEQGKKVSKHIVN----NEKILIGRN 345
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQ-SGLSRQLFDIWCSDKKNACVIPG 368
P N +D +S++ S G Q L++ LFD W SD +N + P
Sbjct: 680 PENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 727
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQ-SGLSRQLFDIWCSDKKNACVIPG 368
P N +D +S++ S G Q L++ LFD W SD +N + P
Sbjct: 723 PENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 770
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQ-SGLSRQLFDIWCSDKKNACVIPG 368
P N +D +S++ S G Q L++ LFD W SD +N + P
Sbjct: 679 PENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 726
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 322 PLNSIDDFSDVGPSVVMASPGGLQ-SGLSRQLFDIWCSDKKNACVIPG 368
P N +D +S++ S G Q L++ LFD W SD +N + P
Sbjct: 679 PENLMDQYSEINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPN 726
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,328,842
Number of Sequences: 62578
Number of extensions: 637866
Number of successful extensions: 1467
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1383
Number of HSP's gapped (non-prelim): 47
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)