BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044504
(525 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/517 (90%), Positives = 503/517 (97%)
Query: 9 SLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYF 68
SLKRR+ P+SR+GDQLI+TPLGAG+EVGRSCVYMS++GK ILFDCGIHPAYSGMAALPYF
Sbjct: 7 SLKRREQPISRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYF 66
Query: 69 DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV 128
DEIDPS+IDVLLITHFH+DHAASLPYFLEKTTF GRVFMTHATKAIYKLLLTDYVKVSKV
Sbjct: 67 DEIDPSSIDVLLITHFHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKVSKV 126
Query: 129 SVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLY 188
SVEDMLFDEQDIN+SMDKIEV+DFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR+LY
Sbjct: 127 SVEDMLFDEQDINKSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRILY 186
Query: 189 TGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
TGDYSREEDRHLRAAELPQFSPDICIIEST GVQLHQ R+IREKRFTDVIHST++QGGRV
Sbjct: 187 TGDYSREEDRHLRAAELPQFSPDICIIESTSGVQLHQSRHIREKRFTDVIHSTVAQGGRV 246
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
LIPAFALGRAQELLLILDEYW+NHP+ HNIPIYYASPLAKKCMAVYQTYILSMN+RIRNQ
Sbjct: 247 LIPAFALGRAQELLLILDEYWANHPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQ 306
Query: 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
FANSNPF FKHISPLNSIDDF+DVGPSVVMA+PGGLQSGLSRQLFD WCSDKKNAC+IPG
Sbjct: 307 FANSNPFVFKHISPLNSIDDFNDVGPSVVMATPGGLQSGLSRQLFDSWCSDKKNACIIPG 366
Query: 369 YVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 428
Y+VEGTLAKTII+EPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL
Sbjct: 367 YMVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIIL 426
Query: 429 VHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGE 488
VHGE++EM RLK KL+TE D NTKI+TPKNC+SVEMYFNSEK+AKTIGRLAEKTP+VG+
Sbjct: 427 VHGEANEMMRLKQKLLTEFPDGNTKIMTPKNCESVEMYFNSEKLAKTIGRLAEKTPDVGD 486
Query: 489 TVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
TVSGILVKKGFTYQIMAPD+LH+FSQLSTA +TQRIT
Sbjct: 487 TVSGILVKKGFTYQIMAPDELHVFSQLSTATVTQRIT 523
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/508 (62%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/508 (61%), Positives = 395/508 (77%), Gaps = 3/508 (0%)
Query: 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAID 77
+ E DQL+I PLGAG EVGRSC+ + +KG+ I+ DCGIHP GM ALPY D IDP+ ID
Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEID 65
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+LLI+HFHLDH +LP+FL+KT+FKGR FMTHATKAIY+ LL+DYVKVS +S +DML+ E
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTE 125
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
D+ SMDKIE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+ED
Sbjct: 126 TDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQED 185
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP FALGR
Sbjct: 186 RHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGR 245
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKF 317
AQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF F
Sbjct: 246 AQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVF 305
Query: 318 KHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
KHIS L S+D F D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK
Sbjct: 306 KHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAK 365
Query: 378 TIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMG 437
I+SEP+E+T M+G PL M V YISFSAH DY QTS F++ L PP++ILVHGE +EM
Sbjct: 366 HIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQNEMA 425
Query: 438 RLKTKLMTELAD---CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
RLK L+ E D + ++ P+N ++V + F EK+AK +G LA+K PE G+ VSGIL
Sbjct: 426 RLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQRVSGIL 485
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQ 522
VK+ F Y I++P DL ++ L+ + + Q
Sbjct: 486 VKRNFNYHILSPCDLSNYTDLAMSTVKQ 513
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/519 (57%), Positives = 395/519 (76%), Gaps = 5/519 (0%)
Query: 10 LKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD 69
LKR + + D L ITP+G+G+EVGRSCV + YKGK ++FDCG+HPAYSG+ +LP+FD
Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFD 81
Query: 70 EI--DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSK 127
I D ID+LL++HFHLDHAA++PYF+ KT FKGRVFMTH TKAIY +LL+DYVKVS
Sbjct: 82 SIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSN 141
Query: 128 VSVED-MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186
++ +D MLFD+ D++RS++KIE + + Q VE NGIK C+ AGHVLGAAMFM++IAGV++
Sbjct: 142 ITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKI 201
Query: 187 LYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGG 246
LYTGD+SR+EDRHL AE P D+ IIESTYGVQ+H+PR REKRFT +H + + G
Sbjct: 202 LYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNG 261
Query: 247 RVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR 306
+ LIP FALGRAQELLLILDEYW +P+ H++PIYYAS LAKKCM VY+TYI MN+R+R
Sbjct: 262 KCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVR 321
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
QF SNPF+FKHI + I+ F D GP V MASPG LQSGLSRQLF+ WCSDK+N VI
Sbjct: 322 AQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVI 381
Query: 367 PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
PGY VEGTLAK I+SEP E+T ++ + PLN+ V Y+SFSAH+D+ QTS F++E+ PP++
Sbjct: 382 PGYSVEGTLAKHIMSEPAEITRLDNVNVPLNLTVSYVSFSAHSDFLQTSEFIQEIQPPHV 441
Query: 427 ILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
+LVHG+++EM RL+ L+ + N ++TPKN SV + F EK+AKT+G + P+
Sbjct: 442 VLVHGDANEMSRLRQSLVAKFKTIN--VLTPKNAMSVALEFRPEKVAKTLGSIITNPPKQ 499
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
+ + GILV K FT+ I++ D+H ++ L T I Q++T
Sbjct: 500 NDIIQGILVTKDFTHHILSASDIHNYTNLKTNIIKQKLT 538
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 596 bits (1537), Expect = e-169, Method: Compositional matrix adjust.
Identities = 276/512 (53%), Positives = 371/512 (72%), Gaps = 3/512 (0%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
DAPV D L LGAGNEVGRSC + YKGKT++ D G+HPAY+G++ALP+FDE D
Sbjct: 10 DAPVD-PSDLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDL 68
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM 133
S +DVLLI+HFHLDH ASLPY ++KT F+GRVFMTH TKA+ K LL+DYVKVS V +ED
Sbjct: 69 STVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQ 128
Query: 134 LFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193
L+DE+D+ + D+IE +D+H T+EV GIKF Y AGHVLGA M+ V++AGV +L+TGDYS
Sbjct: 129 LYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYS 188
Query: 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAF 253
REEDRHL AE+P PD+ I ESTYG HQPR +E R ++IHSTI GGRVL+P F
Sbjct: 189 REEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVF 248
Query: 254 ALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
ALGRAQELLLILDEYW+NH + ++PIYYAS LA+KCMA++QTY+ MN+ IR FA N
Sbjct: 249 ALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERN 308
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF F+ + L +++ F D+GPSV++ASPG LQ+G+SR L + W D +N ++ GY VEG
Sbjct: 309 PFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEG 368
Query: 374 TLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
T+AK I +EP E+ ++G P M V +SF+AH DY Q S F+ + +IILVHGE
Sbjct: 369 TMAKQITNEPIEIVSLSGQKIPRRMAVEELSFAAHVDYLQNSEFIDLVNADHIILVHGEQ 428
Query: 434 HEMGRLKTKLMTELAD--CNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVS 491
MGRLK+ L ++ + + K+ TP+NC + + F E++ + +G++A P+ G+ +S
Sbjct: 429 TNMGRLKSALASKFHNRKVDVKVYTPRNCVPLYLPFKGERLVRALGKVAVHKPKEGDIMS 488
Query: 492 GILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
GIL++K Y++M+ +DL FS L+T +TQ+
Sbjct: 489 GILIQKDANYKLMSAEDLRDFSDLTTTVLTQK 520
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 594 bits (1532), Expect = e-169, Method: Compositional matrix adjust.
Identities = 275/509 (54%), Positives = 366/509 (71%), Gaps = 7/509 (1%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
DQL I LGAG EVGRSC + Y+GKTI+ D G+HPA++G+AALP+ DE+D S +D +LI
Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILI 81
Query: 82 THFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQ 138
THFHLDHAA+L Y +EKT F+ G+V+MTH TKA+Y+ L++D+V++S +D LFDE
Sbjct: 82 THFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDEN 141
Query: 139 DINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
++ S +IE +DFHQ V + G++F Y AGHVLGA MF+++IAG+R+LYTGD+SREED
Sbjct: 142 EMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREED 201
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
RHL AE+P PD+ I ESTYG Q H+PR +E RFT IH I +GGRVL+P F LGR
Sbjct: 202 RHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGR 261
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFK 316
AQELLL+LDEYW+ HPE H++PIYYAS LAKKC++VYQTYI +MN+ IR +F NPF
Sbjct: 262 AQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFV 321
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FKHIS L S++ F D GP V+MASPG +QSG+SR+L + W DK+N ++ GY VEGT+A
Sbjct: 322 FKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMA 381
Query: 377 KTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEM 436
+ I++EP E+ +NG P M V YISFSAH D+AQ S F+ E+ +I+LVHGE + M
Sbjct: 382 RNILNEPDEIIGINGQKIPRRMSVDYISFSAHVDFAQNSRFIDEIKAQHIVLVHGEQNNM 441
Query: 437 GRLKTKLMTELA--DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGIL 494
+L+ L + KI TP+NC+ + + F +++ AK IG +A K P G+ V G+L
Sbjct: 442 SKLRAALQARFTARGSDVKIHTPRNCEPLVLQFRAQRTAKAIGTIAAKPPAQGDIVDGLL 501
Query: 495 VKKGFTYQIMAPDDLHIFSQLSTANITQR 523
+ K F Y I+ P DL F+ LST+ I QR
Sbjct: 502 ISKDFAYTILDPKDLTDFTGLSTSTIVQR 530
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 572 bits (1475), Expect = e-162, Method: Compositional matrix adjust.
Identities = 272/519 (52%), Positives = 363/519 (69%), Gaps = 10/519 (1%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
++ + D LG G EVGRSC +S+KGKTI+ D G+HPA+SG+A+LP++DE D S I
Sbjct: 30 LTDDSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTI 89
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED-MLF 135
D+LLI+HFHLDHAASLPY ++KT FKGRVFMTH TK IY+ LL+D+V+V+ + D L+
Sbjct: 90 DILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLY 149
Query: 136 DEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
E D+ S +KIE +D+H T+EVNG+KF Y AGHVLGAAM+ +++ GV+VL+TGDYSRE
Sbjct: 150 SEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSRE 209
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
EDRHL AE+P PDI I ESTYG H PR RE+R T +IHST+ +GG+ L+P FAL
Sbjct: 210 EDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFAL 269
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--SN 313
GRAQE+LLILDEYW HP+ IYYAS LAKKC+AVYQTYI MN+ IR +F + +N
Sbjct: 270 GRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTN 329
Query: 314 PFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEG 373
PF+FK+I + ++D F D+GP V++ASPG LQSG+SR L + W D KN ++ GY VEG
Sbjct: 330 PFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEG 389
Query: 374 TLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHG 431
T+AK II+EP E+ L P + V +SF+AH D+ Q S F+ + NIILVHG
Sbjct: 390 TMAKQIINEPNEIPSAQNPDLKVPRRLAVEELSFAAHVDFQQNSEFIDLVDSKNIILVHG 449
Query: 432 ESHEMGRLKTKLMTELADCNTK-----IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV 486
E + M RLK L+ + I P+NC+ VE+ F K+AKT+G++AE+ P V
Sbjct: 450 ELNNMQRLKAALLAKYRGLKNSPREKTIYNPRNCEEVELAFKGVKVAKTVGKMAEEKPHV 509
Query: 487 GETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRIT 525
G+ +SG++V+K F Y +M DL LST+++ +R T
Sbjct: 510 GQIISGVVVQKDFNYGLMGVADLREHVGLSTSSVLERQT 548
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 539 bits (1389), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/563 (48%), Positives = 376/563 (66%), Gaps = 57/563 (10%)
Query: 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
+ D L LG NEVGRSC + YKGKT++ D GIHPA+ G+A+LPY+DE D S ID+L
Sbjct: 10 DKDHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLL 69
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-------SVED 132
LI+HFHLDHAASLPY +++T F+GRVFMTH TKAIY+ LL D+VKV+ + S D
Sbjct: 70 LISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSND 129
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
L+ ++D+ S D+IE +D+H T+EVNGIKF + AGHVLGAAMF ++IAGVRVL+TGDY
Sbjct: 130 NLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDY 189
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
SRE DRHL +AE+P S D+ I+EST+G H+PR RE++ T +IH+ +S+GGRVL+P
Sbjct: 190 SREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPV 249
Query: 253 FALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF 309
FALGRAQE++LILDEYW NH E +PI+YAS LAKKCM+V+QTY+ MN+ IR +F
Sbjct: 250 FALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKF 309
Query: 310 ANS--NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIP 367
+S NPF FK+IS L ++D+F D GPSV++ASPG LQ+GLSR + + WC ++KN ++
Sbjct: 310 KDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVT 369
Query: 368 GYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPN 425
GY VEGT+AK ++ EP+ + ++ +T P QV I+F+AH D+ + F++ + N
Sbjct: 370 GYSVEGTMAKYLLLEPEAIPSVHNPEITIPRRCQVDEITFAAHVDFRENLEFIELIGASN 429
Query: 426 IILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA 480
IILVHGES+ MGRLK+ L++ + + + P+NC V++ F K+A+ +G++
Sbjct: 430 IILVHGESNPMGRLKSALLSNFSSLKDTENEVHVFNPRNCVFVDIEFKDVKVARAVGKII 489
Query: 481 -----------------------EKTPEVGET------------VSGILV--KKGFTYQI 503
E+ PE E+ VSGILV +K F +
Sbjct: 490 EDLDEFITEEDALKNEKRITEIHEEDPETEESKTEIVKEENEKIVSGILVSDEKNFDLSL 549
Query: 504 MAPDDLHI-FSQLSTANITQRIT 525
++ DL + QLST +T+R T
Sbjct: 550 VSLSDLREHYQQLSTTVLTERQT 572
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 538 bits (1387), Expect = e-152, Method: Compositional matrix adjust.
Identities = 255/489 (52%), Positives = 350/489 (71%), Gaps = 25/489 (5%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDH
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDH 73
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDI 140
AASLPY +++T F+GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+
Sbjct: 74 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDL 133
Query: 141 NRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
S DKIE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL
Sbjct: 134 VDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHL 193
Query: 201 RAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQE 260
+AE+P S ++ I+EST+G H+PR RE++ T +IHST+ +GGRVL+P FALGRAQE
Sbjct: 194 NSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQE 253
Query: 261 LLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPF 315
++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF
Sbjct: 254 IMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPF 313
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+IS L +++DF D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+
Sbjct: 314 IFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTM 373
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK I+ EP + +N +T P QV ISF+AH D+ + F++++ PNIILVHGE+
Sbjct: 374 AKFIMLEPDTIPSINNPEITIPRRCQVEEISFAAHVDFQENLEFIEKISAPNIILVHGEA 433
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA-----EKT 483
+ MGRLK+ L++ A D + P+NC V++ F K+AK +G + E+
Sbjct: 434 NPMGRLKSALLSNFASLKGTDNEVHVFNPRNCVEVDLEFQGVKVAKAVGNIVNEIYKEEN 493
Query: 484 PEVGETVSG 492
E+ E ++
Sbjct: 494 VEIKEEIAA 502
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/473 (52%), Positives = 350/473 (73%), Gaps = 19/473 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YKGKT++ D G+HPA+ G+A+LP++DE D S ++VLLI+HFHLDH
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLSQVEVLLISHFHLDH 75
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS-------VEDMLFDEQDIN 141
AASLPY +++T F+GRVFMTH TKAIY+ LL+D+VKV+ + ++ L+ ++D+
Sbjct: 76 AASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLA 135
Query: 142 RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
S D+IE +D+H T++VNGIKF Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL
Sbjct: 136 ESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLN 195
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
+AE+P DI I+EST+G H+PR +EK+ T +IH+T+S+GGRVL+P FALGRAQE+
Sbjct: 196 SAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEI 255
Query: 262 LLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFK 316
+LILDEYWS H E +PI+YAS LA+KCM+V+QTY+ MN++IR +F +S NPF
Sbjct: 256 MLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFI 315
Query: 317 FKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
FK+IS L ++D+F D GPSV++ASPG LQ+GLSR L + WC D+KN +I GY VEGT+A
Sbjct: 316 FKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMA 375
Query: 377 KTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
K ++ EP+ + +N ++ P QV ISF+AH D+ + F++++ PNIILVHGES+
Sbjct: 376 KFLMLEPETIPSINNSDVSIPRRCQVEEISFAAHVDFRENLEFVEKIGAPNIILVHGESN 435
Query: 435 EMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482
MGRLK+ L++ + + ++ P+NC +V++ F K+AK +G + ++
Sbjct: 436 PMGRLKSALLSNFSSLKGTEDEVRVYNPRNCVAVDLEFKGVKIAKAVGNIVDE 488
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 252/492 (51%), Positives = 348/492 (70%), Gaps = 18/492 (3%)
Query: 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAI 76
V +Q LG GNEVGRSC + +KGKTI+ D GIHPAY GMA+LP++D+ D S +
Sbjct: 3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIV 62
Query: 77 DVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV------SV 130
DVLLI+HFHLDHAASLPY ++KT FKGRVFMTH TKAIY+ LL D+V+V+ + +
Sbjct: 63 DVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAE 122
Query: 131 EDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTG 190
+D L+ +D+ S DKIE +D+H ++VNGIKF + AGHVLGAAMF ++IAG+RVL+TG
Sbjct: 123 DDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTG 182
Query: 191 DYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLI 250
DYSRE DRHL +AE+P DI I+EST+G H+PR REK+ T +IHST+++GGRVL+
Sbjct: 183 DYSREIDRHLNSAEVPPLPSDILIVESTFGTATHEPRLHREKKLTQLIHSTVNKGGRVLM 242
Query: 251 PAFALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRN 307
P FALGRAQEL+LILDEYWS H E + IPI+YAS LA+KC++V+QTY+ MN+ IR
Sbjct: 243 PVFALGRAQELMLILDEYWSQHKEELGSNQIPIFYASNLARKCLSVFQTYVNMMNDNIRK 302
Query: 308 QFANS--NPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACV 365
+F +S NPF FK+I+ + ++D+F D GPSV++ASPG LQ+GLSR L + WC D+KN +
Sbjct: 303 KFRDSQTNPFIFKNIAYIKNLDEFQDFGPSVMLASPGMLQNGLSRDLLERWCPDEKNLVL 362
Query: 366 IPGYVVEGTLAKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMP 423
I GY VEGT+AK ++ EP + ++ +T P +V +SF+AH D+ + F++++
Sbjct: 363 ITGYSVEGTMAKYLLLEPDTIPSVSNPEVTIPRRCRVEELSFAAHVDFQENLEFIEQINA 422
Query: 424 PNIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGR 478
NIILVHGE + MGRLK+ L++ A + + P+NC +++ K+AK +G
Sbjct: 423 SNIILVHGEPNPMGRLKSALLSNYASFKGTEDEVHVHNPRNCYELDIECKGVKVAKAVGN 482
Query: 479 LAEKTPEVGETV 490
+ ++ E V
Sbjct: 483 IVDEIKRTEEEV 494
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust.
Identities = 242/483 (50%), Positives = 334/483 (69%), Gaps = 29/483 (6%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HP G+++LP++DE D S +D+LL++HFHLDH
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLSKVDILLVSHFHLDH 78
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV----------------SVED 132
AASLPY ++ T F GRVFMTHATKAIY+ LL+D+VKV+ + +
Sbjct: 79 AASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDPNANTGSS 138
Query: 133 MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
L+ + D+ RS D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDY
Sbjct: 139 NLYTDDDLMRSFDRIETIDYHSTIELDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 198
Query: 193 SREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252
S EEDRHL+ AE+P PDI I EST+G H+PR +E R T++IHST+ +GGR+L+P
Sbjct: 199 SSEEDRHLQVAEVPPIKPDILITESTFGTATHEPRLEKETRMTNIIHSTLLKGGRILMPV 258
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIR------ 306
FALGRAQELLLIL+EYWS + + NI IYYAS LA+KCMAVYQTY MN+ IR
Sbjct: 259 FALGRAQELLLILEEYWSLNDDLQNINIYYASSLARKCMAVYQTYTNIMNDSIRLTTSAT 318
Query: 307 NQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
N NPF+FK I + ++D F D GP VV+ASPG LQ+G+SR+L + W D KNA ++
Sbjct: 319 NSSKKQNPFQFKFIKSIKNLDKFQDFGPCVVVASPGMLQNGVSRELLERWAPDPKNAVIM 378
Query: 367 PGYVVEGTLAKTIISEPKEV-TLMNG-LTAPLNMQVHYISFSAHADYAQTSTFLKELMPP 424
GY VEGT+AK +++EP + + MN +T P + + ISF+AH D+ Q ++F++++ P
Sbjct: 379 TGYSVEGTMAKDLLTEPHTIQSAMNSDMTIPRRLSIEEISFAAHVDFQQNASFIEKVNPS 438
Query: 425 NIILVHGESHEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRL 479
IILVHGES+ MGRLK+ L+++ A + K+ P+NC V + K+AK +G L
Sbjct: 439 KIILVHGESNPMGRLKSALLSKYASRKGTEQEVKVFNPRNCDEVTIGIKGLKVAKVLGTL 498
Query: 480 AEK 482
AE+
Sbjct: 499 AEE 501
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 508 bits (1307), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/558 (46%), Positives = 353/558 (63%), Gaps = 47/558 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 16 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 74
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+VS +
Sbjct: 75 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSD 134
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T VN I+ + AGHVLGAAMF++ IAG+ +L+T
Sbjct: 135 QRTTLYTEHDHLSTLPLIETIDFNTTHTVNSIRITPFPAGHVLGAAMFLISIAGLNILFT 194
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL AE+P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 195 GDYSREEDRHLIPAEVPKGIKIDVLITESTFGISTNPPRLEREAALMKSITGILNRGGRV 254
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLILDEYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 255 LMPVFALGRAQELLLILDEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 314
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F A++ P+ FK + L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 315 FRQRMAEAEASGDKSASAGPWDFKFVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 374
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTA-------------------P 395
W +++N V+ GY VEGT+AK +++EP+++ + +A P
Sbjct: 375 RWAPNERNGVVMTGYSVEGTMAKQLLNEPEQIPAVMSRSAGGVSRRGLAGTDEEQKIMIP 434
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ AD K
Sbjct: 435 RRCTVDEISFAAHVDGVENRNFIEEVAAPVVILVHGEKHQMMRLKSKLLSLNADKAVKVK 494
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTP----EVGETVSGILVKKGFTYQIMAPDDL 509
+ TP NC V + F +K+AK +G+LA+ P + G +SG+LV+ GF +MAPDDL
Sbjct: 495 VYTPANCDEVRIPFRKDKIAKVVGKLAQVAPPSDQDDGRLMSGVLVQNGFDLSLMAPDDL 554
Query: 510 HIFSQLSTANIT--QRIT 525
++ L+T IT Q IT
Sbjct: 555 REYAGLTTTTITCKQHIT 572
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 504 bits (1299), Expect = e-142, Method: Compositional matrix adjust.
Identities = 256/568 (45%), Positives = 359/568 (63%), Gaps = 72/568 (12%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDH 88
LG NEVGRSC + YK K I+ D G+HPA SG A+ PYFDE D S +D+LLI+HFH+DH
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDISKVDILLISHFHVDH 164
Query: 89 AASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDM-------LFDEQ 138
+ASLPY ++++ F+G+VFMTHATKAIY+ L+ D+V+V+ + ED L+ +
Sbjct: 165 SASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSNLYTDD 224
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
DI +S D+IE +D+H T+E++GI+F Y AGHVLGA M+ ++I G++VL+TGDYSREE+R
Sbjct: 225 DIMKSFDRIETIDYHSTMEIDGIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDYSREENR 284
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AAE+P PDI I EST+G +PR E++ T IH+TI++GGRVL+P FALG A
Sbjct: 285 HLHAAEVPPLKPDILISESTFGTGTLEPRIELERKLTTHIHATIAKGGRVLLPVFALGNA 344
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN---SNPF 315
QELLLILDEYWS + + N+ ++YAS LAKKCMAVY+TY MN++IR A+ SNPF
Sbjct: 345 QELLLILDEYWSQNEDLQNVNVFYASNLAKKCMAVYETYTGIMNDKIRLSSASSEKSNPF 404
Query: 316 KFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FK+I + + F D+GPSVV+A+PG LQ+G+SRQL + W D KN ++ GY VEGT+
Sbjct: 405 DFKYIKSIKDLSKFQDMGPSVVVATPGMLQAGVSRQLLEKWAPDGKNLVILTGYSVEGTM 464
Query: 376 AKTIISEPKEVTLMNG--LTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGES 433
AK ++ EP + +T P + + ISF+AH D+ Q S F++++ P +ILVHG+S
Sbjct: 465 AKELLKEPTMIQSATNPDMTIPRRIGIEEISFAAHVDFQQNSEFIEKVSPSKVILVHGDS 524
Query: 434 HEMGRLKTKLMTELA-----DCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV-- 486
MGRLK+ L+++ A D K+ PKNC+ + + F K+AK +G LAE+ +V
Sbjct: 525 VPMGRLKSALLSKYASRKGTDQEVKVYNPKNCEELIIGFKGLKIAKVLGSLAEEQLQVLK 584
Query: 487 --------------------------------------------------GETVSGILVK 496
G+ VSG+LV
Sbjct: 585 KIIQDEVSAENSKITELTEEKEEADEIKEDNGETDTTQKPNESSINVLKTGQVVSGVLVS 644
Query: 497 KGFTYQIMAPDDLHIFSQLSTANITQRI 524
K F ++ DLH F+QLST+ + ++
Sbjct: 645 KDFNLNLLQLQDLHEFTQLSTSIVKSKM 672
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/530 (46%), Positives = 347/530 (65%), Gaps = 19/530 (3%)
Query: 4 VGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
V QPP DAP L IT LGAG EVGRSC + ++GK I+ D G+HPA G+
Sbjct: 18 VLQPPD---EDAP------SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIG 68
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLT 120
ALP+ DE+D S +D +LITHFH+DHAA+LPY +EKT FK G+V+MTHATKAIY L +
Sbjct: 69 ALPFIDELDWSTVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMM 128
Query: 121 DYVKVSKVS--VEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMF 177
D V+++ + L+DE D+ S +D+HQ + + G++F Y AGHVLGA+MF
Sbjct: 129 DTVRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMF 188
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+++IAG+++LYTGDYSREEDRHL AE+P PD+ I EST+GV R +E++FT +
Sbjct: 189 LIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFTTL 248
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ + + +GGR L+P + G QEL L+LDEYW++HPE NIP+Y+AS L ++ M VY+TY
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTY 308
Query: 298 ILSMNERIRNQFA-NSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDI 355
+ +MN IR++FA NPF F+ + L + GP V+M+SP + GLSR L +
Sbjct: 309 VHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEE 368
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
W D KN ++ GY +EGT+A+T++SEP + + G P + V ISF AH DYAQ S
Sbjct: 369 WAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGAHVDYAQNS 428
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMA 473
F++E+ +++LVHGE+ +MGRL+ L A +I TPKNC+ + + F E+M
Sbjct: 429 KFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTLTFRQERMV 488
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
K IG LA PE G +V G+LV K F+Y +++P DLH F+ LST+ I Q+
Sbjct: 489 KAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQK 538
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 500 bits (1288), Expect = e-141, Method: Compositional matrix adjust.
Identities = 247/530 (46%), Positives = 347/530 (65%), Gaps = 19/530 (3%)
Query: 4 VGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMA 63
V QPP DAP L IT LGAG EVGRSC + ++GK I+ D G+HPA G+
Sbjct: 18 VLQPPD---EDAP------SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIG 68
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK---GRVFMTHATKAIYKLLLT 120
ALP+ DE+D S +D +LITHFH+DHAA+LPY +EKT FK G+V+MTHATKAIY L +
Sbjct: 69 ALPFIDELDWSTVDAMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMM 128
Query: 121 DYVKVSKVS--VEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMF 177
D V+++ + L+DE D+ S +D+HQ + + G++F Y AGHVLGA+MF
Sbjct: 129 DTVRLNDQNPDTSGRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMF 188
Query: 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDV 237
+++IAG+++LYTGDYSREEDRHL AE+P PD+ I EST+GV R +E++FT +
Sbjct: 189 LIEIAGLKILYTGDYSREEDRHLVMAEIPPVKPDVMICESTFGVHTLPDRKEKEEQFTTL 248
Query: 238 IHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTY 297
+ + + +GGR L+P + G QEL L+LDEYW++HPE NIP+Y+AS L ++ M VY+TY
Sbjct: 249 VANIVRRGGRCLMPIPSFGNGQELALLLDEYWNDHPELQNIPVYFASSLFQRGMRVYKTY 308
Query: 298 ILSMNERIRNQFA-NSNPFKFKHISPLNSIDDF-SDVGPSVVMASPGGLQSGLSRQLFDI 355
+ +MN IR++FA NPF F+ + L + GP V+M+SP + GLSR L +
Sbjct: 309 VHTMNANIRSRFARRDNPFDFRFVKWLKDPQKLRENKGPCVIMSSPQFMSFGLSRDLLEE 368
Query: 356 WCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTS 415
W D KN ++ GY +EGT+A+T++SEP + + G P + V ISF AH DYAQ S
Sbjct: 369 WAPDSKNGVIVTGYSIEGTMARTLLSEPDHIESLKGGNVPRRLTVKEISFGAHVDYAQNS 428
Query: 416 TFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKII--TPKNCQSVEMYFNSEKMA 473
F++E+ +++LVHGE+ +MGRL+ L A +I TPKNC+ + + F E+M
Sbjct: 429 KFIQEIGAQHVVLVHGEASQMGRLRAALRDTYAAKGQEINIHTPKNCEPLTLTFRQERMV 488
Query: 474 KTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQR 523
K IG LA PE G +V G+LV K F+Y +++P DLH F+ LST+ I Q+
Sbjct: 489 KAIGSLAATRPEHGTSVKGLLVSKDFSYTLLSPADLHDFTGLSTSTIIQK 538
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 255/551 (46%), Positives = 350/551 (63%), Gaps = 47/551 (8%)
Query: 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLI 81
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP++D+ D S +DVLLI
Sbjct: 23 DELMFLCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLI 82
Query: 82 THFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVS---VEDMLFDEQ 138
+HFH+DHAASLPY L KT F+GRVFMTH TKAIYK L+ D V+V S ++ EQ
Sbjct: 83 SHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTEQ 142
Query: 139 DINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
D + +IE +D+H T ++ I+ Y AGHVLGAAMF+++IAG+ + +TGDYSRE+DR
Sbjct: 143 DHLNTFPQIEAIDYHTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDR 202
Query: 199 HLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
HL +AE+P+ D+ I ESTYG+ H PR RE+ I S +++GGRVL+P FALGR
Sbjct: 203 HLVSAEVPKGVKIDVLITESTYGIASHVPRLEREQALMKSITSILNRGGRVLMPVFALGR 262
Query: 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-------- 309
AQELLLILDEYW H +F PIYYAS LA+KCM +YQTY+ +MN+ I+ F
Sbjct: 263 AQELLLILDEYWGKHADFQKYPIYYASNLARKCMLIYQTYVGAMNDNIKRLFRERMAEAE 322
Query: 310 ------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNA 363
P+ FK+I L ++D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 323 ASGDGAGKGGPWDFKYIRSLKNLDRFDDVGGCVMLASPGMLQNGVSRELLERWAPSEKNG 382
Query: 364 CVIPGYVVEGTLAKTIISEPKEVTL-----MNG-----------LTAPLNMQVHYISFSA 407
+I GY VEGT+AK I+ EP ++ M G + P V SF+A
Sbjct: 383 VIITGYSVEGTMAKQIMQEPDQIQAVMSRSMAGARRMPGGDGEKVLIPRRCSVQEYSFAA 442
Query: 408 HADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTKIITPKNCQSVEM 465
H D + F++E+ P +ILVHGE H M RLK+KL++ A+ K+ +P+NC+ + +
Sbjct: 443 HVDGVENREFIEEVQAPVVILVHGEQHNMMRLKSKLLSLNANKTAKVKVYSPRNCEELRI 502
Query: 466 YFNSEKMAKTIGRLAEKTP---------EVGETVSGILVKKGFTYQIMAPDDLHIFSQLS 516
F ++K+AK +G+LA P V+G+LV+ F +MAP+DL ++ L+
Sbjct: 503 PFKADKIAKVVGKLACIQPPQSIHPDQTATPPLVTGVLVQNDFKLSLMAPEDLREYAGLN 562
Query: 517 TANIT--QRIT 525
T IT QR+T
Sbjct: 563 TTTITCKQRLT 573
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/560 (45%), Positives = 353/560 (63%), Gaps = 49/560 (8%)
Query: 14 DAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP 73
D PV D+L LG GNEVGRSC + YKGKT++ D G+HPA G +ALP+FDE D
Sbjct: 15 DEPVD-PSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDL 73
Query: 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVED- 132
S +D+LLI+HFH+DH+++LPY L KT FKGRVFMTHATKAIYK L+ D V+V+ +
Sbjct: 74 STVDILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSD 133
Query: 133 ---MLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYT 189
L+ E D ++ IE +DF+ T +N I+ Y AGHVLGAAMF++ IAG+ +L+T
Sbjct: 134 QRTTLYTEHDHLSTLPLIETIDFNTTHTINSIRITPYPAGHVLGAAMFLISIAGLNILFT 193
Query: 190 GDYSREEDRHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRV 248
GDYSREEDRHL A +P+ D+ I EST+G+ + PR RE I +++GGRV
Sbjct: 194 GDYSREEDRHLIPATVPRGVKIDVLITESTFGISSNPPRLEREAALMKSITGVLNRGGRV 253
Query: 249 LIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308
L+P FALGRAQELLLIL+EYW HPE IPIYY A++CM VYQTYI +MN+ I+
Sbjct: 254 LMPVFALGRAQELLLILEEYWETHPELQKIPIYYIGNTARRCMVVYQTYIGAMNDNIKRL 313
Query: 309 F--------------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFD 354
F ++ P+ FK++ L S++ F DVG V++ASPG LQ+G SR+L +
Sbjct: 314 FRQRMAEAEASGDKSVSAGPWDFKYVRSLRSLERFDDVGGCVMLASPGMLQTGTSRELLE 373
Query: 355 IWCSDKKNACVIPGYVVEGTLAKTIISEPKEV-------------TLMNG------LTAP 395
W +++N V+ GY VEGT+AK +++EP ++ T MNG + P
Sbjct: 374 RWAPNERNGVVMTGYSVEGTMAKQLLNEPDQIHAVMSRAATGMGRTRMNGNDEEQKIMIP 433
Query: 396 LNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELAD--CNTK 453
V ISF+AH D + F++E+ P +ILVHGE H+M RLK+KL++ A+ K
Sbjct: 434 RRCTVDEISFAAHVDGVENRNFIEEVSAPVVILVHGEKHQMMRLKSKLLSLNAEKTVKVK 493
Query: 454 IITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEV------GETVSGILVKKGFTYQIMAPD 507
+ TP NC+ V + F +K+AK +G+LA+ T G ++G+LV+ GF +MAPD
Sbjct: 494 VYTPANCEEVRIPFRKDKIAKVVGKLAQTTLPTDNEDGDGPLMAGVLVQNGFDLSLMAPD 553
Query: 508 DLHIFSQLSTANIT--QRIT 525
DL ++ L+T IT Q IT
Sbjct: 554 DLREYAGLATTTITCKQHIT 573
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 498 bits (1282), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/558 (44%), Positives = 351/558 (62%), Gaps = 54/558 (9%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80
D+L+ LG GNEVGRSC + YKGKT++ D G HPAY G+AALP+FD+ D S +DVLL
Sbjct: 21 ADELMFLNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFDDFDLSTVDVLL 80
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVE---DMLFDE 137
I+HFH+DHAASLPY L KT F+GRVFMTHATKAIYK L+ D V+V S +++ E
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 138 QDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREED 197
+D ++ IE +D++ T ++ I+ Y AGHVLGAAMF+++IAG+++ +TGDYSREED
Sbjct: 141 EDHLKTFPMIEAIDYNTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREED 200
Query: 198 RHLRAAELPQ-FSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALG 256
RHL +A++P+ D+ I ESTYG+ H PR RE+ I +++GGRVL+P FALG
Sbjct: 201 RHLISAKVPKGVKIDVLITESTYGIASHIPRPEREQALMKSITGILNRGGRVLMPVFALG 260
Query: 257 RAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF------- 309
RAQELLLILDEYW H E+ PIYYAS LA+KCM VYQTY+ SMN+ I+ F
Sbjct: 261 RAQELLLILDEYWGKHAEYQKYPIYYASNLARKCMLVYQTYVGSMNDNIKRLFRERLAES 320
Query: 310 -------ANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKN 362
P+ F+ I L S+D F DVG V++ASPG LQ+G+SR+L + W +KN
Sbjct: 321 ESSGDGAGKGGPWDFRFIRSLKSLDRFEDVGGCVMLASPGMLQNGVSRELLERWAPSEKN 380
Query: 363 ACVIPGYVVEGTLAKTIISEPKEVTLM----------------NGLTAPLNMQVHYISFS 406
+I GY VEGT+AK ++ EP+++ + + P V SF+
Sbjct: 381 GVIITGYSVEGTMAKQLLQEPEQIQAVMSRNIAGARRGPGGDAEKVMIPRRCTVQEFSFA 440
Query: 407 AHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELA--DCNTKIITPKNCQSVE 464
AH D + F++E+ P +ILVHGE H M RLK+KL++ A + K+ +P+NC+ +
Sbjct: 441 AHVDGVENREFIEEVAAPVVILVHGEVHNMMRLKSKLLSLNATKEHKVKVFSPRNCEELR 500
Query: 465 MYFNSEKMAKTIGRLAEKTPEVGET----------------VSGILVKKGFTYQIMAPDD 508
+ F ++K+AK +G+LA P + E ++G+LV+ F +MAP+D
Sbjct: 501 IPFKTDKVAKVVGKLASIPPSLKEAKTGHDGPLPSSTEPQLITGVLVQNDFKMSLMAPED 560
Query: 509 LHIFSQLSTANIT--QRI 524
L ++ L+T I QR+
Sbjct: 561 LREYAGLTTTTIACKQRL 578
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 347 bits (891), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 191/506 (37%), Positives = 290/506 (57%), Gaps = 33/506 (6%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I + +D
Sbjct: 3 EIKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH TKAI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + PD+ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPDLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN 313
GRAQEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N
Sbjct: 243 GRAQELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRN 298
Query: 314 PFKFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVE 372
F+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+
Sbjct: 299 MFEFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQ 356
Query: 373 GTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGE 432
GT+ I+S +++ + + MQV Y+SFSAHAD +++ P N++LVHGE
Sbjct: 357 GTVGHKILSGQRKLEMEGRQILEVKMQVEYMSFSAHADAKGIMQLIRQAEPRNVLLVHGE 416
Query: 433 SHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSE----------KMAKTIGRLAE- 481
+ +M LK K+ E + P N ++ ++ N K IG L +
Sbjct: 417 AKKMEFLKQKIEQEF---HVNCYMPANGETTTIFTNPSIPVDISLGLLKRETAIGLLPDA 473
Query: 482 KTPEVGETVSGILVKKGFTYQIMAPD 507
K P++ + G L+ K ++++++P+
Sbjct: 474 KKPKL---MHGTLIMKDNSFRLVSPE 496
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 263/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H Y+ P F I S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRT--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQMLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M L+ K+ E P N ++V +
Sbjct: 419 KMEFLRQKIEQEF---RVSCYMPANGETVTL 446
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 338 bits (866), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVNCYMPANGETVTL 446
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 338 bits (866), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 264/451 (58%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H ++ P F I + +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MTH T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P++ I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W +PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMNL--KVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P +++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ EL P N ++V +
Sbjct: 419 KMEFLKQKIEQEL---RVSCYMPANGETVTL 446
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 337 bits (864), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 190/501 (37%), Positives = 283/501 (56%), Gaps = 28/501 (5%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+TPLGAG +VGRSC+ +S GK I+ DCG+H ++ P F I + +D ++
Sbjct: 6 VTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVI 65
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
I+HFHLDH +LPY E + G ++MTH TKAI +LL D+ K++ E F Q
Sbjct: 66 ISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQM 125
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ L+ HQTV+V+ ++ Y AGHVLGAAM + + V+YTGDY+ DR
Sbjct: 126 IKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDR 185
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL AA + + PDI I ESTY + + RE+ F +H T+ +GG+VLIP FALGRA
Sbjct: 186 HLGAAWIDKCRPDILISESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRA 245
Query: 259 QELLLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFK 316
QEL ++L+ +W E N+ PIY+++ L +K Y+ +I N++IR F N F+
Sbjct: 246 QELCILLETFW----ERMNLKAPIYFSTGLTEKANHYYKLFITWTNQKIRKTFVQRNMFE 301
Query: 317 FKHISPLNSIDDFSD-VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTL 375
FKHI + ++D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT+
Sbjct: 302 FKHIKAFDR--SYADNPGPMVVFATPGMLHAGQSLQIFKKWAGNEKNMVIMPGYCVQGTV 359
Query: 376 AKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHE 435
I++ K++ + T + +QV Y+SFSAHAD ++ P N++LVHGE+ +
Sbjct: 360 GHKILNGQKKLEMEGRATLDVKLQVEYMSFSAHADAKGIMQLIRMAEPRNMLLVHGEAKK 419
Query: 436 MGRLKTKLMTEL-------ADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA--EKTPEV 486
M LK K+ E A+ T I V++ N K +G K P
Sbjct: 420 MEFLKDKIEQEFSISCFMPANGETTTIVTNPSVPVDISLNLLKREMALGGPLPDAKRP-- 477
Query: 487 GETVSGILVKKGFTYQIMAPD 507
T+ G L+ K + ++++P+
Sbjct: 478 -RTMHGTLIMKDNSLRLVSPE 497
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 333 bits (855), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 176/451 (39%), Positives = 259/451 (57%), Gaps = 15/451 (3%)
Query: 23 QLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----ID 77
++ +TPLGAG +VGRSC+ +S GK ++ DCG+H +S P F S +D
Sbjct: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLD 62
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFD 136
++I+HFHLDH +LPYF E + G ++MT T+AI +LL DY K++ E F
Sbjct: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFT 122
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSRE 195
Q I M K+ + HQTV+V+ ++ Y AGHVLGAAMF + + V+YTGDY+
Sbjct: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
Query: 196 EDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFAL 255
DRHL AA + + P + I ESTY + + RE+ F +H T+ +GG+VLIP FAL
Sbjct: 183 PDRHLGAAWIDKCRPSLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
GRAQEL ++L+ +W PIY+++ L +K Y+ +I N++IR F N F
Sbjct: 243 GRAQELCILLETFWERMDL--KAPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 316 KFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGT 374
+FKHI + F+D GP VV A+PG L +G S Q+F W ++KN ++PGY V+GT
Sbjct: 301 EFKHIKAFDRA--FADSPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGT 358
Query: 375 LAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434
+ I+S +++ + + MQV Y+SFSAHAD + + P N++LVHGE+
Sbjct: 359 VGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPENVLLVHGEAK 418
Query: 435 EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465
+M LK K+ E P N ++V +
Sbjct: 419 KMEFLKQKIEQEF---RVNCYMPANGETVTL 446
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 317 bits (813), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/442 (38%), Positives = 247/442 (55%), Gaps = 22/442 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSA-----IDVLL 80
+ PLGAG +VGRSCV ++ K I+FDCG+H + P F I + ID ++
Sbjct: 5 VVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVIDCVI 64
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQD 139
ITHFHLDH +LP+F E + G ++MT TKAI +LL DY K++ + E F Q
Sbjct: 65 ITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFFTAQM 124
Query: 140 INRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDR 198
I M K+ ++ HQT++V+ + Y AGHVLGAAMF + V+YTGDY+ DR
Sbjct: 125 IKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNMTPDR 184
Query: 199 HLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258
HL +A + Q PD+ I E+TY + + RE+ F IH + +GG+VLIP FALGR
Sbjct: 185 HLGSAWIDQVKPDVLITETTYATTIRDSKRGRERDFLKRIHECVEKGGKVLIPVFALGRV 244
Query: 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFK 318
QEL +++D YW H IPIY+++ LA+K Y+ +I N++I+ F N F FK
Sbjct: 245 QELCILIDSYWEQMNLGH-IPIYFSAGLAEKANLYYKLFINWTNQKIKQTFVKRNMFDFK 303
Query: 319 HISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAK 377
HI P S D G V+ A+PG L +G S ++F W ++ N +IPGY V GT+
Sbjct: 304 HIKPFQS--HLVDAPGAMVLFATPGMLHAGASLEVFKKWAPNELNMTIIPGYCVVGTVGN 361
Query: 378 TIISEPKE-----------VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNI 426
+++ + V + T + ++H +SFSAHAD +K P N+
Sbjct: 362 KLLTTGSDQQQQSKPQSQMVEIDKKTTIEVKCKIHNLSFSAHADAKGILQLIKMSNPRNV 421
Query: 427 ILVHGESHEMGRLKTKLMTELA 448
ILVHGE +MG L K++ E+
Sbjct: 422 ILVHGEKEKMGFLSQKIIKEMG 443
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 297 bits (760), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 166/445 (37%), Positives = 243/445 (54%), Gaps = 18/445 (4%)
Query: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 83
LGAG E+G+SCV ++ GK I+FDCG+H P F I S AI ++ITH
Sbjct: 8 LGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAISCIIITH 67
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVS-KVSVEDMLFDEQDINR 142
FH+DH +LPYF E + G ++M++ TKA+ L+L DY +V E+ LF I
Sbjct: 68 FHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELFTTTHIAN 127
Query: 143 SMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201
M K+ +D QT++V+ ++ Y AGHVLGA M + ++YTGDY+ DRHL
Sbjct: 128 CMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNMTTDRHLG 187
Query: 202 AAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
AA++ + D+ I ESTY + + RE+ F +H ++ GG+ LIP+FALGRAQEL
Sbjct: 188 AAKIDRLQLDLLISESTYATTIRGSKYPREREFLQAVHKCVAGGGKALIPSFALGRAQEL 247
Query: 262 LLILDEYWSNHPEFHNI--PIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKH 319
++LD+YW E NI PIY++S L + Y+ I ++ ++ + NPF FK+
Sbjct: 248 CMLLDDYW----ERMNIKVPIYFSSGLTIQANMYYKMLISWTSQNVKEKHNTHNPFDFKN 303
Query: 320 ISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA-KT 378
+ + GP V+ A+PG L +G S ++F W N +PGY V GT+ K
Sbjct: 304 VKDFDR-SLIHAPGPCVLFATPGMLCAGFSLEVFKHWAPSPLNLVALPGYSVAGTVGHKL 362
Query: 379 IISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+ +P V L NG + +VH ++FS H D K L P N++LVHGE M
Sbjct: 363 MAGKPTTVDLYNGTKVDVRCKVHQVAFSPHTDAKGIMDLTKFLSPKNVVLVHGEKPSMMI 422
Query: 439 LKTKLMTELADCNTKIITPKNCQSV 463
LK K+ +EL + P N ++V
Sbjct: 423 LKEKITSEL---DIPCFVPANGETV 444
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 129/413 (31%), Positives = 220/413 (53%), Gaps = 33/413 (7%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
G ++G SCV + + +L DCG+ P +P ++D A+D ++++H HLDH
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMSP---DTGEIP---KVDDKAVDAVIVSHAHLDHC 61
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
++P++ FK +++ TH T + + D + ++K + E+DI +M+ IE
Sbjct: 62 GAIPFY----KFK-KIYCTHPTADLMFITWRDTLNLTKA------YKEEDIQHAMENIEC 110
Query: 150 LDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQF 208
L++++ ++ IKF Y AGH+LG+A +++ G ++LYTGD + R L A+
Sbjct: 111 LNYYEERQITENIKFKFYNAGHILGSASIYLEVDGKKILYTGDINEGVSRTLLPADTDID 170
Query: 209 SPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
D+ IIESTYG + + R E++ + I TI GG+V+IP FA+GRAQE+LLI++
Sbjct: 171 EIDVLIIESTYGSPLDIKPARKTLERQLIEEISETIENGGKVIIPVFAIGRAQEILLIIN 230
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS-NPFKFKHISPLNS 325
Y + + ++PIY L AVY +YI +N +I+N N NPF +
Sbjct: 231 NYIRSG-KLRDVPIYTDGSLI-HATAVYMSYINWLNPKIKNMVENRINPF-----GEIKK 283
Query: 326 IDD--FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEP 383
D+ + P +++++ G +Q G + + D KN ++ GY EGTL + +
Sbjct: 284 ADESLVFNKEPCIIVSTSGMVQGGPVLKYLKL-LKDPKNKLILTGYQAEGTLGRELEEGA 342
Query: 384 KEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKEL-MPPNIILVHGESHE 435
KE+ P+ +V I FSAH DY ++K++ P I++HGE ++
Sbjct: 343 KEIQPFKN-KIPIRGKVVKIEFSAHGDYNSLVRYIKKIPKPEKAIVMHGERYQ 394
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 196 bits (497), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 144/436 (33%), Positives = 225/436 (51%), Gaps = 30/436 (6%)
Query: 21 GDQLI-ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAID 77
GD I ++ LG EVGRSC+Y+ +L DCGI+ A A P+FD E +D
Sbjct: 176 GDYWIRVSFLGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIEDLD 234
Query: 78 VLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDE 137
+++TH HLDH +P + + G V+ T T+ + LL DY++++K +++ +
Sbjct: 235 AVIVTHAHLDHCGFIPGLF-RYGYDGPVYCTRPTRDLMTLLQKDYLEIAKKEGKEVPYTS 293
Query: 138 QDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAG--VRVLYTGDYSR 194
+DI + +D+ T +++ IK + AGHVLG+A+ + I + YTGD
Sbjct: 294 KDIKTCVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKF 353
Query: 195 EEDRHLRAA--ELPQFSPDICIIESTYGV--QLHQPRNIREKRFTDVIHSTISQGGRVLI 250
E R L A + P+ + IIESTYG + R E+ V+ T +GG+VLI
Sbjct: 354 ETSRLLEPAVCQFPRL--ETLIIESTYGAYDDVLPEREEAERELLRVVSETTDRGGKVLI 411
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF- 309
P F +GRAQEL+L+L+E ++ N P+Y + + A++ Y +++ +R +
Sbjct: 412 PVFGVGRAQELMLVLEEGYNQG--IFNAPVYLDG-MIWEATAIHTAYPEYLSKEMRQKIF 468
Query: 310 -ANSNPF---KFKHISPLNSIDDFSDVG-PSVVMASPGGLQSGLSRQLFDIWCSDKKNAC 364
NPF FK + N D P V++A+ G L G S + D+KNA
Sbjct: 469 HEGDNPFLSEVFKRVGSTNERRKVIDSDEPCVILATSGMLTGGPSVEYLKHLAPDEKNAI 528
Query: 365 VIPGYVVEGTLAKTIISEPKEVTLM--NGLTA--PLNMQVHYI-SFSAHADYAQTSTFLK 419
+ GY EGTL + + S KE+ ++ NG T P+N+QV+ I FS H+D Q +++
Sbjct: 529 IFVGYQAEGTLGRKVQSGWKEIPIITRNGKTKSIPINLQVYTIEGFSGHSDRKQLIKYIR 588
Query: 420 ELMPP--NIILVHGES 433
L P II+VHGE
Sbjct: 589 RLKPSPEKIIMVHGEE 604
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/414 (30%), Positives = 202/414 (48%), Gaps = 19/414 (4%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH 85
I P GA EV S + G+ +L DCG+ F DP +D +L+TH H
Sbjct: 3 IVPFGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFG-FDPKEVDAVLLTHAH 61
Query: 86 LDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMD 145
LDH LP + ++G V+ T AT + +++L D +KV +++ F +D+ ++
Sbjct: 62 LDHVGRLPKLF-REGYRGPVYATRATVLLMEIVLEDALKV----MDEPFFGPEDVEEALG 116
Query: 146 KIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAEL 205
+ L++ + + + + AGH+ G+A + G ++Y+GD E L L
Sbjct: 117 HLRPLEYGEWLRLGALSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDLGNREKDVLPDPSL 176
Query: 206 PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLIL 265
P + D+ + E TYG + H+P + F +++ T+SQGG+VLIP FA+ RAQE+L +L
Sbjct: 177 PPLA-DLVLAEGTYGDRPHRPYRETVREFLEILEKTLSQGGKVLIPTFAVERAQEILYVL 235
Query: 266 DEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLN 324
Y H PIY SP+A + +++Y + +E ++ F NPF+ + +
Sbjct: 236 --YTHGH-RLPRAPIYLDSPMAGRVLSLYPRLVRYFSEEVQAHFLQGKNPFRPAGLEVVE 292
Query: 325 SIDDFSDV----GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
+ + GP VV+A G L G SD +NA V GY +G L II
Sbjct: 293 HTEASKALNRAPGPMVVLAGSGMLAGGRILHHLKHGLSDPRNALVFVGYQPQGGLGAEII 352
Query: 381 SEPKEVTLMNGLTAPLNMQVHYI-SFSAHADYAQTSTFLKELMPPNIILVHGES 433
+ P V ++ G PL VH + FS HA + +L+ P ++LVHGE
Sbjct: 353 ARPPAVRIL-GEEVPLRASVHTLGGFSGHAGQDELLDWLQG--EPRVVLVHGEE 403
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 121/440 (27%), Positives = 208/440 (47%), Gaps = 22/440 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHA 89
GA EVGRSC+ + IL DCG+ P D +D + I+H HLDH+
Sbjct: 7 GAALEVGRSCIEIKTDKSKILLDCGVKLGKE--IEYPILDN-SIRDVDKVFISHAHLDHS 63
Query: 90 ASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149
+LP + V T +K + K+LL D VK+++ + + ++ D+ ++
Sbjct: 64 GALPVLFHRK-MDVPVITTELSKKLIKVLLKDMVKIAETENKKIPYNNHDVKEAIRHTIP 122
Query: 150 LDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREEDRHLRAAELP-- 206
L+++ + ++AGH+ G+A +++ + +LYTGD + R + A+L
Sbjct: 123 LNYNDKKYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGDVKLRDTRLTKGADLSYT 182
Query: 207 QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILD 266
+ DI IIESTYG +H R E F + I + +GG LIP FA+ RAQE+LLIL+
Sbjct: 183 KDDIDILIIESTYGNSIHPDRKAVELSFIEKIKEILFRGGVALIPVFAVDRAQEILLILN 242
Query: 267 EYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSN-PFKFKHISPLNS 325
+Y + P Y +A + + Y +NE + + A N K + +
Sbjct: 243 DYNIDAP-------IYLDGMAVEVTKLMLNYKHMLNESSQLEKALKNVKIIEKSEDRIKA 295
Query: 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE 385
I++ S G +V+ + G L G ++ + KNA ++ GY V + + +I E +
Sbjct: 296 IENLSKNG-GIVVTTAGMLDGGPILYYLKLFMHNPKNALLLTGYQVRDSNGRHLI-ETGK 353
Query: 386 VTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMT 445
+ + P N++V +FS HA + +K++ P +I+ HGE + L+ +
Sbjct: 354 IFIGKDEIKP-NLEVCMYNFSCHAGMDELHEIIKKVNPELLIIQHGEEVQATILRNWALE 412
Query: 446 ELADCNTKIITPKNCQSVEM 465
D ITPK + + +
Sbjct: 413 HGFDA----ITPKLGEKIRI 428
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 148 bits (374), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 113/377 (29%), Positives = 192/377 (50%), Gaps = 22/377 (5%)
Query: 21 GDQLIITPL-GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVL 79
G + +TPL G NE S + +S G L DCG + + + L + S ID +
Sbjct: 2 GTSVQVTPLCGVYNENPLSYL-VSIDGFNFLIDCGWNDLFD-TSLLEPLSRV-ASTIDAV 58
Query: 80 LITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKL-LLTDYVK-VSKVSVEDM-LFD 136
L++H H +LPY +++ V+ AT+ +++L LLT Y + +S+ V D LF
Sbjct: 59 LLSHPDTLHIGALPYAMKQLGLSAPVY---ATEPVHRLGLLTMYDQFLSRKQVSDFDLFT 115
Query: 137 EQDINRSMDKIEVLDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDY 192
DI+ + + L + Q ++G I + AGH+LG +++ + G V+Y DY
Sbjct: 116 LDDIDSAFQNVIRLTYSQNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDY 175
Query: 193 SREEDRHLRAAELPQF-SPDICIIESTYGVQLHQ-PRNIREKRFTDVIHSTISQGGRVLI 250
+ ++RHL L F P + I ++ + + +Q R R+K F D I + GG VL+
Sbjct: 176 NHRKERHLNGTVLQSFVRPAVLITDAYHALYTNQTARQQRDKEFLDTISKHLEVGGNVLL 235
Query: 251 PAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA 310
P GR ELLLIL+++WS + PIY+ + ++ + ++++ M++ I F
Sbjct: 236 PVDTAGRVLELLLILEQHWSQRG--FSFPIYFLTYVSSSTIDYVKSFLEWMSDSISKSFE 293
Query: 311 NS--NPFKFKHISPLNSIDDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
S N F +H++ L + D + GP VV+AS L++G +R++F W +D +N +
Sbjct: 294 TSRDNAFLLRHVTLLINKTDLDNAPPGPKVVLASMASLEAGFAREIFVEWANDPRNLVLF 353
Query: 367 PGYVVEGTLAKTIISEP 383
GTLA+ + S P
Sbjct: 354 TETGQFGTLARMLQSAP 370
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/365 (27%), Positives = 176/365 (48%), Gaps = 19/365 (5%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--SAIDVLLITHFHLD 87
GA +E G C + G IL DCG + L YF+E+ P I +LI+H
Sbjct: 12 GAKDE-GPLCYLLQVDGDYILLDCGWDERF----GLQYFEELKPFIPKISAVLISHPDPL 66
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-FDEQDINRSMDK 146
H LPY + K V+ T + ++ + D V S + VE+ + D++ + +K
Sbjct: 67 HLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMV-YSHLDVEEFEHYTLDDVDTAFEK 125
Query: 147 IEVLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMV-DIAGVRVLYTGDYSREEDRHLRA 202
+E + ++QTV + +G+ F AGH+LG +++ + + G ++Y D++ +++RHL
Sbjct: 126 VEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKERHLNG 185
Query: 203 AELPQFSPDICIIESTYGVQLHQ-PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
F+ +I + + L Q R R+++ I T+ Q G +I GR EL
Sbjct: 186 CSFDNFNRPHLLITGAHHISLPQMRRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLEL 245
Query: 262 LLILDEYWSN-HPEFHNIPIYYASPLAKKCMAVYQTYILSMNERI---RNQFANSNPFKF 317
+LD+ WSN + S +A + ++ + MNE++ + A NPF
Sbjct: 246 AHLLDQLWSNADAGLSTYNLVMMSHVASSVVQFAKSQLEWMNEKLFKYDSSSARYNPFTL 305
Query: 318 KHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
KH++ +S + V P VV+ S ++SG SR+LF WCSD +N ++ TLA
Sbjct: 306 KHVTLCHSHQELMRVRSPKVVLCSSQDMESGFSRELFLDWCSDPRNGVILTARPASFTLA 365
Query: 377 KTIIS 381
+++
Sbjct: 366 AKLVN 370
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 175/383 (45%), Gaps = 35/383 (9%)
Query: 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS------ 74
G + +TPL G C ++ G L DCG + D DPS
Sbjct: 2 GTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCG------------WTDLCDPSHLQPLA 49
Query: 75 ----AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSV 130
ID +L++H H +LPY ++ V+ T + L L DY +S+ V
Sbjct: 50 KVAPTIDAVLLSHADTMHLGALPYAMKHLGLSAPVYATEPVFRLGILTLYDYF-ISRRQV 108
Query: 131 EDM-LFDEQDINRSMDKIEVLDFHQTVEVN----GIKFWCYTAGHVLGAAMFMVDIAGVR 185
D LF DI+ + + L + Q +N GI + AGH LG ++ + G
Sbjct: 109 SDFDLFTLDDIDAAFQNVVRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGED 168
Query: 186 VLYTGDYSREEDRHLRAAELPQF-SPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQ 244
V+Y D++ ++RHL L F P + I ++ + H + +++ F D + ++
Sbjct: 169 VVYAVDFNHRKERHLNGTALGSFVRPAVLITDAYNALNNHVYKRQQDQDFIDALVKVLTG 228
Query: 245 GGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNER 304
GG VL+P GR E+LLIL++YW+ + PIY+ + ++ + ++++ MN+
Sbjct: 229 GGSVLLPIDTAGRVLEILLILEQYWAQRHLIY--PIYFLTNVSTSTVDYVKSFLEWMNDS 286
Query: 305 IRNQFANS--NPFKFKHISPLNSIDDFSDVG--PSVVMASPGGLQSGLSRQLFDIWCSDK 360
I F ++ N F K ++ + + D+ +G P VV+AS L+ G S +F ++
Sbjct: 287 ISKSFEHTRDNAFLLKCVTQIINKDELEKLGDAPKVVLASMASLEVGFSHDIFVDMANEA 346
Query: 361 KNACVIPGYVVEGTLAKTIISEP 383
KN + GTLA+ + +P
Sbjct: 347 KNLVLFTEKGQFGTLARMLQVDP 369
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/412 (25%), Positives = 190/412 (46%), Gaps = 33/412 (8%)
Query: 30 GAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--SAIDVLLITHFHLD 87
GA +E G C + IL DCG + L YF+E+ P I +LI+H
Sbjct: 12 GAKDE-GPLCYLLQVDNDYILLDCGWDERFE----LKYFEELRPYIPKISAVLISHPDPL 66
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDML-FDEQDINRSMDK 146
H LPY + K V+ T + ++ + D V S + VE+ + D++ + +K
Sbjct: 67 HLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLV-YSHLDVEEFQHYSLDDVDMAFEK 125
Query: 147 IEVLDFHQTVEV---NGIKFWCYTAGHVLGAAMFMV-DIAGVRVLYTGDYSREEDRHLRA 202
+E + ++QTV + +G+ F AGH++G +M+ + I G ++Y D++ +DRHL
Sbjct: 126 VEQVKYNQTVVLKGDSGVNFTAMPAGHMIGGSMWRICRITGEDIIYCVDFNHRKDRHLSG 185
Query: 203 AELPQFSPDICIIESTYGVQLHQ-PRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQEL 261
F+ +I + + L Q R R+++ I T+ Q G +I GR EL
Sbjct: 186 CSFDNFNRPHLLITGAHHISLPQMKRKDRDEQLVTKILRTVRQKGDCMIVIDTAGRVLEL 245
Query: 262 LLILDEYWSNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNE---RIRNQFANSNPFKF 317
+LD+ W+N + S +A + ++ + M+E R + A NPF
Sbjct: 246 AYLLDQLWANQDAGLSTYNLVMMSHVASSVVQFAKSQLEWMDEKLFRYDSSSARYNPFTL 305
Query: 318 KHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLA 376
K+++ ++S + + P VV+ S +++G SR+LF WC+D++N ++ TLA
Sbjct: 306 KNVNLVHSHLELIKIRSPKVVLCSSQDMETGFSRELFLDWCADQRNGVILTARPASFTLA 365
Query: 377 KTII------------SEPKEVTLMNGLTAPLNMQ--VHYISFSAHADYAQT 414
++ +E K ++L+ PL + + Y A D +T
Sbjct: 366 ARLVELAERANDGVLRNEDKHLSLLVRKRVPLEGEELLEYKRRKAERDAEET 417
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 167/357 (46%), Gaps = 19/357 (5%)
Query: 39 CVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS--AIDVLLITHFHLDHAASLPYFL 96
C + IL DCG + + E+ +D +L++H H +LPY +
Sbjct: 20 CYILQIDDVRILLDCGWDEKFDA----NFIKELKRQVHTLDAVLLSHPDAYHLGALPYLV 75
Query: 97 EKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDKIEVLDFHQT 155
K ++ T + ++ + D + +S ++ D LF D++ + +KI L ++QT
Sbjct: 76 GKLGLNCPIYATIPVFKMGQMFMYD-LYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQT 134
Query: 156 VEVN----GIKFWCYTAGHVLGAAMF-MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSP 210
V + GI AGH++G ++ +V + ++Y D++ +++RHL EL +
Sbjct: 135 VSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDRLQR 194
Query: 211 DICIIESTYGVQLHQPRN-IREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYW 269
+I Y Q Q R R+++ I T+ G VLI GR EL +LD+ W
Sbjct: 195 PSLLITDAYNAQYQQARRRARDEKLMTNILQTVRNNGNVLIAVDTAGRVLELAHMLDQLW 254
Query: 270 SNHPE-FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSI 326
N + + ++ + ++ I M++++ F A +NPF+FKHI +S+
Sbjct: 255 KNKESGLMAYSLALLNNVSYNVIEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHSL 314
Query: 327 DDFSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
D + GP VV+AS L+SG +R LF W S+ N+ ++ GTLA ++
Sbjct: 315 ADVYKLPAGPKVVLASTPDLESGFTRDLFVQWASNANNSIILTTRTSPGTLAMELVE 371
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 126 bits (317), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 173/379 (45%), Gaps = 30/379 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
+T L E C + L DCG +S D ID ID +L
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS-------MDIIDSLRKHVHQIDAVL 59
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQD 139
++H H +LPY + K ++ T + ++ + D + S+ + ED LF D
Sbjct: 60 LSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDD 118
Query: 140 INRSMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSR 194
++ + DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++
Sbjct: 119 VDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNH 178
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPA 252
+ + HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 179 KREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAV 237
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQF 309
GR EL +LD+ W + +Y + L V + + + M++++ F
Sbjct: 238 DTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCF 295
Query: 310 AN--SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
+ +NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 296 EDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIIL 355
Query: 367 PGYVVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 356 TYRTTPGTLARFLIDNPSE 374
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 173/379 (45%), Gaps = 30/379 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
+T L E C + L DCG +S D ID ID +L
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS-------MDIIDSLRKHVHQIDAVL 59
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQD 139
++H H +LPY + K ++ T + ++ + D + S+ + ED LF D
Sbjct: 60 LSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDD 118
Query: 140 INRSMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSR 194
++ + DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++
Sbjct: 119 VDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNH 178
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPA 252
+ + HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 179 KREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAV 237
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQF 309
GR EL +LD+ W + +Y + L V + + + M++++ F
Sbjct: 238 DTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCF 295
Query: 310 AN--SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
+ +NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 296 EDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIIL 355
Query: 367 PGYVVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 356 TYRTTPGTLARFLIDNPSE 374
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 173/379 (45%), Gaps = 30/379 (7%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLL 80
+T L E C + L DCG +S D ID ID +L
Sbjct: 7 LTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFS-------VDIIDSLRKHVHQIDAVL 59
Query: 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQD 139
++H H +LP+ + K ++ T + ++ + D + S+ + ED LF D
Sbjct: 60 LSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFTLFTLDD 118
Query: 140 INRSMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSR 194
++ + DKI+ L F Q V + +G+ AGH++G ++ + G ++Y D++
Sbjct: 119 VDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNH 178
Query: 195 EEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPA 252
+ + HL L S +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 179 KREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAV 237
Query: 253 FALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQF 309
GR EL +LD+ W + +Y + L V + + + M++++ F
Sbjct: 238 DTAGRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCF 295
Query: 310 AN--SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 366
+ +NPF+F+H+S + + D + V P VV+AS L+ G SR LF WC D KN+ ++
Sbjct: 296 EDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIIL 355
Query: 367 PGYVVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 356 TYRTTPGTLARFLIDNPTE 374
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/374 (26%), Positives = 170/374 (45%), Gaps = 24/374 (6%)
Query: 27 TPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHL 86
T L + C + IL DCG+ +Y+ +L E ID +L++H
Sbjct: 8 TALSGAKDESPPCYLLEIDDFCILLDCGL--SYNLDFSLLEPLEKVAKKIDAVLLSHSDT 65
Query: 87 DHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV--KVSKVSVEDMLFDEQDINRSM 144
H LPY + K G ++ T + + L D K+S+ + D D
Sbjct: 66 THIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQEEFQQYSLDNIDSCFGE 125
Query: 145 DKIEVLDFHQTVEVNG----IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHL 200
D+ + L F Q ++G I Y AGH +GA+++ + ++Y DY+ + HL
Sbjct: 126 DRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHRNEGHL 185
Query: 201 RAAELPQ--FSPDICIIESTYGVQ--LHQPRNI-REKRFTDVIHSTISQGGRVLIPAFAL 255
+ +L P + I +S GV L + I R++ + I+ + GG VLIP
Sbjct: 186 DSLQLTSDILKPSLLITDSK-GVDKTLAFKKTITRDQSLFEQINRNLRDGGNVLIPVDTA 244
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAV-----YQTYILSMNERIRNQFA 310
GR ELLL ++ YWS + ++ +Y L + +V Q +S ++ +
Sbjct: 245 GRVLELLLCIENYWSKN---KSLALYSVVFLGRFSFSVCQFARSQLEFMSSTASVKFEQN 301
Query: 311 NSNPFKFKHISPLNSIDDFSDVGPS--VVMASPGGLQSGLSRQLFDIWCSDKKNACVIPG 368
NPF FKHI L+S+++ ++ + V++ S L++G SR+LF WCSD K +
Sbjct: 302 IENPFSFKHIKILSSLEELQELPDTNKVILTSSQDLETGFSRELFIQWCSDPKTLILFTQ 361
Query: 369 YVVEGTLAKTIISE 382
+ + +LA +I +
Sbjct: 362 KIPKDSLADKLIKQ 375
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 174/376 (46%), Gaps = 24/376 (6%)
Query: 26 ITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP--SAIDVLLITH 83
+T L E C + L DCG +S + D + +D +L++H
Sbjct: 7 LTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFS----MDIIDSVKKYVHQVDAVLLSH 62
Query: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINR 142
H +LPY + K ++ T + ++ + D + S+ + ED LF D++
Sbjct: 63 PDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQ-SRHNTEDFSLFSLDDVDC 121
Query: 143 SMDKIEVLDFHQTVEV----NGIKFWCYTAGHVLGAAMFMVDIAGVR-VLYTGDYSREED 197
+ DKI+ L ++Q V + +G+ AGH++G ++ + G ++Y D++ + +
Sbjct: 122 AFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKRE 181
Query: 198 RHLRAAELPQFSPDICIIESTYGVQLHQPRNIR--EKRFTDVIHSTISQGGRVLIPAFAL 255
HL L + +I ++ QPR + E+ T+V+ T+ G VLI
Sbjct: 182 IHLNGCSLEMINRPSLLITDSFNATYVQPRRKQRDEQLLTNVLE-TLRGDGNVLIAVDTA 240
Query: 256 GRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQ---TYILSMNERIRNQFAN- 311
GR EL +LD+ W + +Y + L V + + + M++++ F +
Sbjct: 241 GRVLELAQLLDQIWRTKDA--GLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDK 298
Query: 312 -SNPFKFKHISPLNSIDDFSDV-GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+NPF+F+H++ + D + V P VV+AS L+ G SR+LF WC D KN+ ++
Sbjct: 299 RNNPFQFRHLTLCHGYSDLARVPSPKVVLASQPDLECGFSRELFIQWCQDPKNSVILTYR 358
Query: 370 VVEGTLAKTIISEPKE 385
GTLA+ +I P E
Sbjct: 359 TTPGTLARFLIDHPSE 374
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 26/313 (8%)
Query: 73 PSAIDVLLITHFHLDHAASLPYFLEKTTFKGR-VFMTHATKAIYKLLLTDYVKVSKVSVE 131
P D++L++H L H L Y K +K ++ T T + ++ + D +K + +S
Sbjct: 41 PEQPDLILLSHSDLAHIGGLVYAYYKYDWKNAYIYATLPTINMGRMTMLDAIKSNYIS-- 98
Query: 132 DMLFDEQDINRSMDKIEVLDFHQTV----EVNGIKFWCYTAGHVLGAAMFMVDIAGVRVL 187
DM + D++ D I L + Q + +G+ Y AGH LG ++ + VL
Sbjct: 99 DM--SKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESESVL 156
Query: 188 YTGDYSREEDRHLRAAEL--------PQFSPDICIIESTYGVQLHQPRNIREKRFTDVIH 239
Y D++ +D+HL A L P+ I ++ + R R++ F + +
Sbjct: 157 YAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAFIESVM 216
Query: 240 STISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYIL 299
S++ +GG VL+P A R EL ILD +WS PI + SP + K + ++ I
Sbjct: 217 SSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTSTKTIDYAKSMIE 276
Query: 300 SMNERIRNQFA-NSNPFKFKHISPLNSIDDFSDV-----GPSVVMASPGGLQSGLSRQLF 353
M + I F N N +F++I N+I DFS + GP V++A+ L+ G S+++
Sbjct: 277 WMGDNIVRDFGINENLLEFRNI---NTITDFSQISHIGPGPKVILATALTLECGFSQRIL 333
Query: 354 DIWCSDKKNACVI 366
S+ N ++
Sbjct: 334 LDLMSENSNDLIL 346
>sp|Q55470|Y514_SYNY3 Uncharacterized protein sll0514 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0514 PE=4 SV=1
Length = 554
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 103/432 (23%), Positives = 174/432 (40%), Gaps = 67/432 (15%)
Query: 28 PLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLD 87
P G G G C+ + IL DCG+ +AA DP +D++ +H H D
Sbjct: 19 PYGVGPRDGGICLELHLGPYRILLDCGLEDLTPLLAA-------DPGTVDLVFCSHAHRD 71
Query: 88 HAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKI 147
H L F ++ + + T+ + L D V RS ++
Sbjct: 72 HGLGLWQFHQQFPHI-PILASEVTQRLLPLNWPDEFVPPFCRVLPW--------RSPQEV 122
Query: 148 EVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG----VRVLYTGDYSREEDRHLRAA 203
+ G+ AGH+ GAA+ +++ RV+YTGDY HL+
Sbjct: 123 ----------LPGLTVELLPAGHLPGAALILLEYHNGDRLYRVIYTGDYCLS---HLQLV 169
Query: 204 E------LPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGR 257
+ L PD+ I+E YG + R +EK+F I + +++G +L+P LG
Sbjct: 170 DGLALTPLRGLKPDVLILEGHYGNRRLPHRRQQEKQFIQAIETVLAKGRNILLPVPPLGL 229
Query: 258 AQELLLILDEYWSNHPEF--HNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF 315
AQE+L +L H +F + ++ +A+ C A YQ I + + +RN FA P
Sbjct: 230 AQEILKLL----RTHHQFTGRQVNLWAGESVARGCDA-YQGIIDHLPDNVRN-FAQHQPL 283
Query: 316 -----KFKHISPL-NSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGY 369
+ H+ PL + + S PS+V+ + L +W +P
Sbjct: 284 FWDDKVYPHLRPLTDDQGELSLSAPSIVITTTWPAFWPSPAALPGLWTVFMPQLLTLPSC 343
Query: 370 VVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILV 429
+V A + E + L + L A H+D T+ + L P +++ V
Sbjct: 344 LV--NFAWQDLEEFPKYELEDYLLA------------DHSDGRNTTQLIHNLRPQHLVFV 389
Query: 430 HGESHEMGRLKT 441
HG+ ++ L +
Sbjct: 390 HGQPSDIEDLTS 401
>sp|Q4R5Z4|INT9_MACFA Integrator complex subunit 9 OS=Macaca fascicularis GN=INTS9 PE=2
SV=1
Length = 637
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/533 (21%), Positives = 214/533 (40%), Gaps = 102/533 (19%)
Query: 39 CVYMSYKGKTILFDCGIH---------------------PAYS---GMAALPYFDEIDPS 74
C + +K TI+ DCG+ P +S G A L + ID S
Sbjct: 14 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSSLPGWSLKDGNAFLDKTELIDLS 73
Query: 75 AIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV----KVSK--- 127
+DV+LI+++H A LPY E T F G V+ T T I +LL+ + V +V K
Sbjct: 74 TVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQS 131
Query: 128 ----------------------VSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFW 164
VS + Q++N ++ KI+++ F Q +E+ G ++
Sbjct: 132 ASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGFSQKIELFGAVQVT 191
Query: 165 CYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224
++G+ LG++ +++ +V Y S + + D+ ++ +
Sbjct: 192 PLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVLVLTGLTQIPTA 251
Query: 225 QPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYAS 284
P + + F + T+ GG VL+P + G +LL L +Y + ++P+Y+ S
Sbjct: 252 NPDGMVGE-FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSA-GLSSVPLYFIS 309
Query: 285 PLAKKCMAVYQTYILSMNERIRNQ-FANSNPF---------KFKHISPLNSIDDFSD--V 332
P+A + Q + + +++ + PF K KH ++ DFS+
Sbjct: 310 PVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHG--DFSNDFR 367
Query: 333 GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGL 392
P VV L+ G ++W + +L I +EP + + + L
Sbjct: 368 QPCVVFTGHPSLRFGDVVHFMELWG--------------KSSLNTVIFTEP-DFSYLEAL 412
Query: 393 TA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADC 450
PL M+ Y ++ Q S LKE+ P +++ + + ++ M + DC
Sbjct: 413 APYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQPPPAQSHRMDLMIDC 471
Query: 451 NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT---PEVGETVSGILVKKGFT 500
++ Y +E +A R EK PE+ +++ + +K G +
Sbjct: 472 QPPAMS---------YRRAEVLALPFKRRYEKIEIMPELADSLVPMEIKPGIS 515
>sp|Q2KJA6|INT9_BOVIN Integrator complex subunit 9 OS=Bos taurus GN=INTS9 PE=2 SV=1
Length = 658
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 108/485 (22%), Positives = 198/485 (40%), Gaps = 80/485 (16%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 84 CLPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELV 141
Query: 124 ----KVSK-------------------------VSVEDMLFDEQDINRSMDKIEVLDFHQ 154
+V K VS + Q++N ++ KI+++ + Q
Sbjct: 142 NFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDIC 213
+E+ G ++ ++G+ LG++ +++ +V Y S + + D+
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVL 261
Query: 214 IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP 273
I+ + P ++ F + T+ GG VL+P + G +LL L +Y +
Sbjct: 262 ILTGLTQIPTANPDSMV-GEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYI-DSA 319
Query: 274 EFHNIPIYYASPLAKKCMAVYQTYI--LSMNERIRNQFANSNPF---------KFKHISP 322
+IP Y+ SP+A + Q + L N++ + + PF K KH
Sbjct: 320 GLSSIPFYFISPVANSSLEFSQIFAEWLCHNKQTK-VYLPEPPFPHAELIQTNKLKHYPS 378
Query: 323 LNSIDDFSD--VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTII 380
++ DFS+ P VV L+ G ++W + +L I
Sbjct: 379 IHG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWG--------------KSSLNTVIF 422
Query: 381 SEPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438
+EP + + + L PL M+ Y ++ Q S LKE+ P +++ +
Sbjct: 423 TEP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPEQYTQPTPA 481
Query: 439 LKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT---PEVGETVSGILV 495
++ M + DC ++ Y +E +A R EK PE+ +++ + +
Sbjct: 482 -QSHRMDLMVDCQPPAMS---------YRRAEVLALPFKRRYEKIEIMPELADSLVPMEI 531
Query: 496 KKGFT 500
K G +
Sbjct: 532 KPGIS 536
>sp|Q6DFF4|INT9_XENLA Integrator complex subunit 9 OS=Xenopus laevis GN=ints9 PE=2 SV=1
Length = 658
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 171/408 (41%), Gaps = 65/408 (15%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
LP + ID S +DV+LI+++H A LPY E+T F G V+ T T I +LL+ + V
Sbjct: 84 CLPETELIDLSTVDVILISNYHCMMA--LPYITERTGFTGTVYATEPTVQIGRLLMEELV 141
Query: 124 ----KVSKVS---------VEDML----------------FDEQDINRSMDKIEVLDFHQ 154
+V K V+ +L + Q++N ++ KI+++ + Q
Sbjct: 142 NFIERVPKAQSATVWKHKDVQRLLPAPLKDAVEVFTWKKCYSMQEVNAALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDIC 213
+E+ G ++ ++G+ LG++ +++ +V Y S + + D+
Sbjct: 202 KIELFGVVQVTPLSSGYALGSSNWVIQSHYEKVSYVSGSSLLTTHPQPMDQTSLKNSDVL 261
Query: 214 IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP 273
I+ + P + F + TI GG VL+P + G +LL L +Y +
Sbjct: 262 ILTGLTQIPTANPDGMV-GEFCSNLAMTIRSGGNVLVPCYPSGVIYDLLECLYQYIDSA- 319
Query: 274 EFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPF---------KFKHISPL 323
N+P Y+ SP+A + Q + + +N+ + PF K KH
Sbjct: 320 GLSNVPFYFISPVANSSLEFSQIFAEWLCHNKQNKVYLPEPPFPHAELIQSNKLKHYP-- 377
Query: 324 NSIDDFSD--VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
N DFS+ P VV L+ G ++W + +L I +
Sbjct: 378 NIHGDFSNDFKQPCVVFTGHPTLRFGDVVHFMELWG--------------KSSLNTVIFT 423
Query: 382 EPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNII 427
EP + + ++ L PL M+ Y ++ Q + LKE+ P +++
Sbjct: 424 EP-DFSYLDALAPYQPLAMKCVYCPIDTRLNFIQVTKLLKEVQPLHVV 470
>sp|Q8K114|INT9_MOUSE Integrator complex subunit 9 OS=Mus musculus GN=Ints9 PE=2 SV=1
Length = 658
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 106/484 (21%), Positives = 196/484 (40%), Gaps = 78/484 (16%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 84 CLPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTMQIGRLLMEELV 141
Query: 124 ----KVSK-------------------------VSVEDMLFDEQDINRSMDKIEVLDFHQ 154
+V K VS + Q++N ++ KI+++ + Q
Sbjct: 142 NFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDIC 213
+E+ G ++ ++G+ LG++ +++ +V Y S + + D+
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVL 261
Query: 214 IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP 273
I+ + P + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 262 ILTGLTQIPTANPDGMV-GEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYI-DSA 319
Query: 274 EFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPF---------KFKHISPL 323
NIP Y+ SP+A + Q + + +++ + PF K KH +
Sbjct: 320 GLSNIPFYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYRSI 379
Query: 324 NSIDDFSD--VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ DFS+ P V+ L+ G ++W + +L I +
Sbjct: 380 HG--DFSNDFRQPCVLFTGHPSLRFGDVVHFMELWG--------------KSSLNTIIFT 423
Query: 382 EPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 424 EP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQPPPA 481
Query: 440 KTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT---PEVGETVSGILVK 496
+ M + DC ++ Y +E +A R EK PE+ +++ + +K
Sbjct: 482 QAHRMDLMIDCQPPAMS---------YRRAEVLALPFKRRYEKIEIMPELADSLVPMEIK 532
Query: 497 KGFT 500
G +
Sbjct: 533 PGIS 536
>sp|Q9NV88|INT9_HUMAN Integrator complex subunit 9 OS=Homo sapiens GN=INTS9 PE=1 SV=2
Length = 658
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 104/484 (21%), Positives = 198/484 (40%), Gaps = 78/484 (16%)
Query: 64 ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYV 123
LP + ID S +DV+LI+++H A LPY E T F G V+ T T I +LL+ + V
Sbjct: 84 CLPETELIDLSTVDVILISNYHCMMA--LPYITEHTGFTGTVYATEPTVQIGRLLMEELV 141
Query: 124 ----KVSK-------------------------VSVEDMLFDEQDINRSMDKIEVLDFHQ 154
+V K VS + Q++N ++ KI+++ + Q
Sbjct: 142 NFIERVPKAQSASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQ 201
Query: 155 TVEVNG-IKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDIC 213
+E+ G ++ ++G+ LG++ +++ +V Y S + + D+
Sbjct: 202 KIELFGAVQVTPLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASLKNSDVL 261
Query: 214 IIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHP 273
++ + P + F + T+ GG VL+P + G +LL L +Y +
Sbjct: 262 VLTGLTQIPTANPDGMV-GEFCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSA- 319
Query: 274 EFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPF---------KFKHISPL 323
++P+Y+ SP+A + Q + + +++ + PF K KH +
Sbjct: 320 GLSSVPLYFISPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSI 379
Query: 324 NSIDDFSD--VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIIS 381
+ DFS+ P VV L+ G ++W + +L I +
Sbjct: 380 HG--DFSNDFRQPCVVFTGHPSLRFGDVVHFMELWG--------------KSSLNTVIFT 423
Query: 382 EPKEVTLMNGLTA--PLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRL 439
EP + + + L PL M+ Y ++ Q S LKE+ P +++ + +
Sbjct: 424 EP-DFSYLEALAPYQPLAMKCIYCPIDTRLNFIQVSKLLKEVQPLHVVCPE-QYTQPPPA 481
Query: 440 KTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKT---PEVGETVSGILVK 496
++ M + DC ++ Y +E +A R EK PE+ +++ + +K
Sbjct: 482 QSHRMDLMIDCQPPAMS---------YRRAEVLALPFKRRYEKIEIMPELADSLVPMEIK 532
Query: 497 KGFT 500
G +
Sbjct: 533 PGIS 536
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,566,752
Number of Sequences: 539616
Number of extensions: 8243026
Number of successful extensions: 19247
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 18825
Number of HSP's gapped (non-prelim): 287
length of query: 525
length of database: 191,569,459
effective HSP length: 122
effective length of query: 403
effective length of database: 125,736,307
effective search space: 50671731721
effective search space used: 50671731721
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)