Query 044504
Match_columns 525
No_of_seqs 520 out of 3441
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1137 mRNA cleavage and poly 100.0 1E-110 3E-115 829.8 34.2 505 19-525 9-515 (668)
2 KOG1136 Predicted cleavage and 100.0 4.8E-92 1.1E-96 660.0 40.3 441 22-469 2-449 (501)
3 COG1782 Predicted metal-depend 100.0 2.5E-88 5.5E-93 666.5 41.2 443 17-465 174-636 (637)
4 TIGR03675 arCOG00543 arCOG0054 100.0 8.3E-82 1.8E-86 675.7 53.8 442 17-465 168-629 (630)
5 COG1236 YSH1 Predicted exonucl 100.0 2.2E-69 4.7E-74 558.7 44.1 424 24-464 1-426 (427)
6 KOG1135 mRNA cleavage and poly 100.0 3.1E-50 6.6E-55 409.7 44.0 442 25-469 3-607 (764)
7 TIGR00649 MG423 conserved hypo 100.0 1.3E-47 2.9E-52 400.5 38.6 389 24-467 1-419 (422)
8 COG0595 mRNA degradation ribon 100.0 5.1E-44 1.1E-48 373.3 31.7 432 21-506 6-461 (555)
9 KOG1138 Predicted cleavage and 100.0 1.1E-34 2.4E-39 286.0 28.6 415 72-506 93-557 (653)
10 PF10996 Beta-Casp: Beta-Casp 99.9 2E-22 4.3E-27 175.2 10.8 122 258-379 1-126 (126)
11 PRK11244 phnP carbon-phosphoru 99.8 1.6E-20 3.4E-25 183.0 16.2 167 24-222 1-191 (250)
12 TIGR02651 RNase_Z ribonuclease 99.8 5.3E-20 1.2E-24 184.3 15.9 173 25-222 1-234 (299)
13 TIGR02649 true_RNase_BN ribonu 99.8 3.1E-19 6.7E-24 178.8 15.9 172 26-222 1-236 (303)
14 TIGR03307 PhnP phosphonate met 99.8 1.5E-18 3.2E-23 167.9 16.6 158 34-222 24-181 (238)
15 KOG1361 Predicted hydrolase in 99.8 4.6E-18 9.9E-23 172.6 19.2 296 74-434 111-413 (481)
16 PRK00055 ribonuclease Z; Revie 99.8 1.5E-18 3.2E-23 171.2 13.8 181 23-222 1-200 (270)
17 PRK02113 putative hydrolase; P 99.8 3.7E-18 8E-23 166.6 16.2 199 24-254 1-224 (252)
18 PRK05184 pyrroloquinoline quin 99.8 7.8E-18 1.7E-22 167.8 14.1 163 36-219 38-222 (302)
19 TIGR02108 PQQ_syn_pqqB coenzym 99.8 1.5E-17 3.3E-22 165.0 15.2 161 36-219 37-222 (302)
20 COG1234 ElaC Metal-dependent h 99.7 8.9E-18 1.9E-22 166.0 3.8 188 23-223 1-225 (292)
21 PRK00685 metal-dependent hydro 99.7 1.7E-15 3.6E-20 145.7 17.4 153 24-217 1-165 (228)
22 PRK02126 ribonuclease Z; Provi 99.7 9.8E-16 2.1E-20 154.1 16.1 173 36-222 15-280 (334)
23 smart00849 Lactamase_B Metallo 99.7 5.3E-16 1.1E-20 143.2 11.4 145 34-197 3-148 (183)
24 PF12706 Lactamase_B_2: Beta-l 99.6 1.3E-15 2.8E-20 142.3 10.0 154 47-222 1-160 (194)
25 PRK04286 hypothetical protein; 99.6 1.9E-14 4.2E-19 143.1 16.9 185 24-217 1-210 (298)
26 TIGR02650 RNase_Z_T_toga ribon 99.5 1.2E-13 2.5E-18 132.9 16.0 213 40-284 12-273 (277)
27 PF00753 Lactamase_B: Metallo- 99.5 2.1E-14 4.6E-19 132.8 9.9 190 34-251 3-192 (194)
28 PRK11709 putative L-ascorbate 99.5 1E-12 2.2E-17 132.8 17.2 167 20-217 34-250 (355)
29 PRK11921 metallo-beta-lactamas 99.5 1.6E-13 3.5E-18 142.3 10.6 130 35-192 31-163 (394)
30 COG2333 ComEC Predicted hydrol 99.4 4.3E-12 9.3E-17 124.0 15.7 169 18-215 39-213 (293)
31 PLN02469 hydroxyacylglutathion 99.4 8.5E-13 1.8E-17 128.4 9.7 131 24-194 1-138 (258)
32 PF07521 RMMBL: RNA-metabolisi 99.4 3.2E-13 6.9E-18 92.6 4.3 42 393-434 2-43 (43)
33 TIGR03413 GSH_gloB hydroxyacyl 99.4 1.1E-12 2.4E-17 127.3 9.6 118 37-194 10-129 (248)
34 PRK05452 anaerobic nitric oxid 99.4 1.3E-12 2.8E-17 138.0 9.8 130 36-192 34-167 (479)
35 TIGR00361 ComEC_Rec2 DNA inter 99.4 1.3E-11 2.7E-16 136.3 17.4 165 22-222 438-611 (662)
36 KOG2121 Predicted metal-depend 99.4 4E-13 8.7E-18 140.9 5.0 198 16-224 435-655 (746)
37 PRK11539 ComEC family competen 99.4 9.8E-12 2.1E-16 138.8 16.3 157 21-215 498-663 (755)
38 PLN02962 hydroxyacylglutathion 99.3 5.3E-12 1.1E-16 121.9 10.8 138 21-195 8-154 (251)
39 PLN02398 hydroxyacylglutathion 99.3 8E-12 1.7E-16 124.6 12.0 133 23-195 75-210 (329)
40 PRK10241 hydroxyacylglutathion 99.3 6E-12 1.3E-16 122.3 8.7 128 24-194 1-130 (251)
41 PF13483 Lactamase_B_3: Beta-l 99.2 4.8E-11 1E-15 108.4 11.2 155 25-252 1-162 (163)
42 COG0491 GloB Zn-dependent hydr 99.2 4.4E-11 9.5E-16 115.9 11.0 160 23-197 11-173 (252)
43 COG2220 Predicted Zn-dependent 99.2 1.2E-09 2.6E-14 106.9 18.0 166 20-218 3-182 (258)
44 COG0426 FpaA Uncharacterized f 99.2 7.4E-11 1.6E-15 118.0 8.8 137 29-193 28-167 (388)
45 COG1235 PhnP Metal-dependent h 99.1 2.5E-10 5.3E-15 112.4 9.8 210 22-257 2-239 (269)
46 KOG0813 Glyoxylase [General fu 99.1 2.1E-10 4.5E-15 109.0 8.1 127 36-194 12-142 (265)
47 COG2248 Predicted hydrolase (m 99.0 2.5E-08 5.5E-13 92.4 16.2 230 24-268 1-264 (304)
48 COG1237 Metal-dependent hydrol 99.0 5.7E-10 1.2E-14 104.8 4.7 75 37-113 22-96 (259)
49 PF02112 PDEase_II: cAMP phosp 98.8 1.5E-07 3.3E-12 93.9 14.8 192 25-223 2-256 (335)
50 KOG0814 Glyoxylase [General fu 97.9 1.9E-05 4.1E-10 69.4 5.5 118 38-193 22-142 (237)
51 PF07522 DRMBL: DNA repair met 97.5 0.00036 7.7E-09 58.7 7.8 93 332-430 12-106 (110)
52 COG5212 PDE1 Low-affinity cAMP 97.3 0.00063 1.4E-08 64.3 7.3 110 74-194 111-234 (356)
53 COG2015 Alkyl sulfatase and re 97.3 3.1E-05 6.7E-10 78.4 -1.4 74 37-111 126-203 (655)
54 PF14597 Lactamase_B_5: Metall 97.3 0.00021 4.6E-09 63.7 3.6 126 27-193 13-138 (199)
55 KOG4736 Uncharacterized conser 97.0 0.001 2.2E-08 63.9 5.3 118 36-195 94-214 (302)
56 PF13691 Lactamase_B_4: tRNase 96.8 0.0015 3.3E-08 48.4 3.6 50 37-91 12-63 (63)
57 KOG3798 Predicted Zn-dependent 96.0 0.045 9.7E-07 51.6 9.3 161 36-222 87-269 (343)
58 KOG1137 mRNA cleavage and poly 95.5 0.077 1.7E-06 55.3 9.5 99 21-121 148-258 (668)
59 KOG3592 Microtubule-associated 89.8 0.17 3.8E-06 54.3 1.8 64 25-97 39-103 (934)
60 PRK00685 metal-dependent hydro 87.9 1.1 2.5E-05 42.4 6.0 56 406-465 168-228 (228)
61 PRK00055 ribonuclease Z; Revie 86.7 1.6 3.5E-05 42.5 6.5 60 405-468 207-269 (270)
62 KOG2862 Alanine-glyoxylate ami 78.5 20 0.00044 35.5 10.0 82 337-435 72-155 (385)
63 TIGR02651 RNase_Z ribonuclease 69.8 9 0.00019 38.0 5.7 56 406-465 242-299 (299)
64 COG4029 Uncharacterized protei 66.9 39 0.00084 28.5 7.6 55 403-460 11-72 (142)
65 PRK11244 phnP carbon-phosphoru 65.7 9.1 0.0002 36.9 4.6 55 406-465 196-250 (250)
66 TIGR02649 true_RNase_BN ribonu 63.2 15 0.00032 36.7 5.7 56 406-465 244-303 (303)
67 TIGR03307 PhnP phosphonate met 63.2 8.5 0.00018 36.8 3.9 53 406-463 186-238 (238)
68 PF12706 Lactamase_B_2: Beta-l 60.7 7.9 0.00017 35.3 3.0 25 406-430 169-193 (194)
69 PF13483 Lactamase_B_3: Beta-l 58.8 11 0.00025 33.5 3.7 29 402-430 133-163 (163)
70 PRK11188 rrmJ 23S rRNA methylt 57.4 20 0.00043 33.7 5.2 64 207-270 115-183 (209)
71 PRK02113 putative hydrolase; P 51.2 29 0.00062 33.4 5.4 56 405-465 197-252 (252)
72 COG1234 ElaC Metal-dependent h 40.8 62 0.0013 32.1 5.9 57 406-465 232-291 (292)
73 PF02670 DXP_reductoisom: 1-de 38.7 51 0.0011 28.4 4.2 40 403-444 28-67 (129)
74 COG1235 PhnP Metal-dependent h 37.0 29 0.00063 33.9 2.9 35 404-438 208-242 (269)
75 TIGR00438 rrmJ cell division p 33.8 1E+02 0.0023 28.0 6.0 62 207-268 96-162 (188)
76 PF02485 Branch: Core-2/I-Bran 31.1 76 0.0017 30.2 4.7 108 405-515 5-114 (244)
77 COG0293 FtsJ 23S rRNA methylas 30.2 1E+02 0.0022 28.8 5.1 86 185-270 87-177 (205)
78 COG1540 Uncharacterized protei 28.6 70 0.0015 30.4 3.7 30 426-455 220-249 (252)
79 PF10137 TIR-like: Predicted n 28.4 1.1E+02 0.0024 26.1 4.7 13 425-437 1-13 (125)
80 COG2927 HolC DNA polymerase II 28.1 2.1E+02 0.0046 25.1 6.3 40 229-268 13-52 (144)
81 PF06288 DUF1040: Protein of u 27.9 52 0.0011 25.6 2.2 20 256-275 4-23 (86)
82 TIGR00537 hemK_rel_arch HemK-r 27.5 2E+02 0.0043 25.8 6.6 37 231-267 119-155 (179)
83 KOG2749 mRNA cleavage and poly 26.9 6.7E+02 0.014 25.8 10.3 66 398-466 215-280 (415)
84 PLN03183 acetylglucosaminyltra 26.7 1.2E+02 0.0026 31.8 5.4 108 404-517 83-202 (421)
85 PRK02126 ribonuclease Z; Provi 25.3 1.2E+02 0.0027 30.7 5.2 30 406-435 288-317 (334)
86 KOG2191 RNA-binding protein NO 23.6 7.7E+02 0.017 24.9 11.4 38 424-467 179-216 (402)
87 KOG2121 Predicted metal-depend 23.2 22 0.00048 39.2 -0.7 71 21-96 46-118 (746)
88 COG5399 Uncharacterized protei 20.9 1.5E+02 0.0032 25.0 3.7 66 348-413 29-98 (139)
89 PF00763 THF_DHG_CYH: Tetrahyd 20.0 3.4E+02 0.0073 22.7 6.1 77 411-498 13-96 (117)
No 1
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.5e-110 Score=829.78 Aligned_cols=505 Identities=66% Similarity=1.079 Sum_probs=492.5
Q ss_pred CCCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhh
Q 044504 19 REGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98 (525)
Q Consensus 19 ~~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~ 98 (525)
..++.+++++||+|+|||+||+++++.|++||+|||.+|++++..++|+++.++++.||.++|||+|+||++.+||++++
T Consensus 9 ~~~d~l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qk 88 (668)
T KOG1137|consen 9 LNSDQLKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQK 88 (668)
T ss_pred CCCCcEEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeee
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEEE
Q 044504 99 TTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFM 178 (525)
Q Consensus 99 ~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~~ 178 (525)
..|.+++|+|++|++++++++.||.++.+...+..+|++.|+.+++.++++++|.++++++|++|+++.+||.+|+|||.
T Consensus 89 Tsf~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~ 168 (668)
T KOG1137|consen 89 TSFIGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFM 168 (668)
T ss_pred ccccceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeee
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccchhhH
Q 044504 179 VDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRA 258 (525)
Q Consensus 179 i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~ 258 (525)
+++.+.+++||||++++.|+++..++.|..++|++|+|||||...|.++.+++.+|...|..++.+||+||+|+||+||+
T Consensus 169 veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrA 248 (668)
T KOG1137|consen 169 VEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRA 248 (668)
T ss_pred eeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCCccccCCCCCeEEE
Q 044504 259 QELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVM 338 (525)
Q Consensus 259 qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~p~vii 338 (525)
|||+.+|++||..+.+++++|||+.|++|++|+.+|++|.+.||+.+++++...|||.|+++..+++.+.+++.+|||++
T Consensus 249 qELllildeyw~~h~~l~~iPiyyaSslakkcm~vfQtyv~~mnd~Irk~~~~~Npfifk~vs~L~~~D~f~D~gP~vv~ 328 (668)
T KOG1137|consen 249 QELLLILDEYWGNHVDLRDIPIYYASSLAKKCMGVFQTYVNMMNDRIRKQSALRNPFIFKHVSILRTGDWFDDEGPSVVM 328 (668)
T ss_pred HHHHHHHHHHhhcchhhhcCceeehhhHHHhhhhhHheehhhhhhhhHHhhccCCceEeeccccccccccccccCCceeE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred eCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCCCHHHHHHHH
Q 044504 339 ASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFL 418 (525)
Q Consensus 339 a~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~i 418 (525)
|+|||+++|+||+++++||+|++|+||++||+++||+|+.++++|+++...+|+.+|.+|+|++++||+|.|+.+..+|+
T Consensus 329 aspgmlqsglSRelfe~wcsD~kN~vlipGy~Vegtlak~il~eP~eI~a~~G~klp~~m~V~~isFaAhvdy~q~s~fi 408 (668)
T KOG1137|consen 329 ASPGMLQSGLSRELFERWCSDSKNAVLIPGYCVEGTLAKDILSEPKEIMAMNGRKLPLRMQVEYISFAAHVDYLQNSEFI 408 (668)
T ss_pred eCchHhhhhhhHHHHHHhCCCCCCcEEeccceechhHHHHHhcCchhhhcccCCcccccceEEEEEeeechhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCHhHHHHHHHHHHHHhccC--CceEeeCCCCCEEEEeeCccchhhhhhhhhccCCccCCeEEeEEEe
Q 044504 419 KELMPPNIILVHGESHEMGRLKTKLMTELADC--NTKIITPKNCQSVEMYFNSEKMAKTIGRLAEKTPEVGETVSGILVK 496 (525)
Q Consensus 419 ~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~--~~~i~~p~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 496 (525)
+.++|+++|+||||.+.|.+|+..|+.++... ++.++.|+|+|.+++.+.+++.+|++|++|+ .|++ ++++|+|++
T Consensus 409 ~~i~~~~lilVHGE~neM~rLKs~L~~~f~d~kv~i~v~tprn~e~v~l~f~~eklak~~G~~a~-~p~~-~~~sgiLv~ 486 (668)
T KOG1137|consen 409 ADITPPHLILVHGEANEMMRLKSALEAAFRDGKVPIDVSTPRNCEDVELYFPGEKLAKTTGSLAE-VPKE-DRVSGILVS 486 (668)
T ss_pred HHhCCCeEEEEecccchhHHHHHHHHHHhccCCCcceecCCccceEeeeecCcchhhhhhhcccc-CCcc-ceEEEEEEe
Confidence 99999999999999999999999999888664 6789999999999999999999999999998 5544 899999999
Q ss_pred eCCcccccCccchhhhhccceeEEEeeeC
Q 044504 497 KGFTYQIMAPDDLHIFSQLSTANITQRIT 525 (525)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (525)
++++|.+++++||..|++|+++.+.|||+
T Consensus 487 ~~~~~~ils~edL~~ys~l~~~~~~erq~ 515 (668)
T KOG1137|consen 487 YGFSYAILSPEDLILYSDLKTIPLNERQV 515 (668)
T ss_pred cCCceeeccHHHhhhhhhheeeeccceEE
Confidence 99999999999999999999999999985
No 2
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=4.8e-92 Score=660.04 Aligned_cols=441 Identities=41% Similarity=0.763 Sum_probs=413.9
Q ss_pred CcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCC-----CCccEEEcCCCchhHhcChHHHH
Q 044504 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDP-----SAIDVLLITHFHLDHAASLPYFL 96 (525)
Q Consensus 22 ~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~-----~~Id~IliTH~H~DH~gglp~l~ 96 (525)
..|++++||+|+++|+||+++..+|++||+|||++.++...+..|.+..+.. +-||+|+|||+|+||+|+||++.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 3689999999999999999999999999999999999988888998876543 46999999999999999999999
Q ss_pred hhcCCCceEEecHHHHHHHHHHHHHHHhhhcc-ccCCCCCCHHHHHHHhcccEEecCCcEEEe-CCEEEEEEeCCCCcCc
Q 044504 97 EKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV-SVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLGA 174 (525)
Q Consensus 97 ~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~gi~v~~~~~gH~~gs 174 (525)
+-.|+++|||||.||++++..+|+|+.++.-. ..+..+|+.+++..|++++..+..+|++.+ .++.++++.+||.+|+
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGA 161 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGA 161 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccce
Confidence 99999999999999999999999999998754 566789999999999999999999999999 5799999999999999
Q ss_pred eEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccc
Q 044504 175 AMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFA 254 (525)
Q Consensus 175 ~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa 254 (525)
++|++..++.+++||||++..+++|+.++.+...++|+||.||||+.....++..+|++|.+.+++++.+||+|+||+||
T Consensus 162 aMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvFA 241 (501)
T KOG1136|consen 162 AMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFA 241 (501)
T ss_pred eEEEEEecceeEEEecCccCCcccccchhhhccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEeee
Confidence 99999999999999999999999999999988889999999999999998888899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCCccccCCCCC
Q 044504 255 LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDFSDVGP 334 (525)
Q Consensus 255 ~gr~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~~~~~p 334 (525)
+||+||++.+|+.||++.. .+.|||+.+++..++..+|+.+..|.|+.+++.+...|+|+|+|++..... ..+.++|
T Consensus 242 LGRAQElCiLLd~YWERm~--lk~Piyfs~Glte~an~yyk~fiswtn~~v~k~~~~rNmfdfkhiKpfd~~-~~~~pGp 318 (501)
T KOG1136|consen 242 LGRAQELCILLDDYWERMN--LKVPIYFSSGLTEKANMYYKMFISWTNENVKKKFVERNMFDFKHIKPFDRS-YIEAPGP 318 (501)
T ss_pred cchHHHHHHHHHHHHHhhc--cCCCccccccccchhchHhhhhhhhcccchhhhhccCCccccccCChhhhh-hhcCCCC
Confidence 9999999999999999864 378999999999999999999999999999999988999999998766431 2256899
Q ss_pred eEEEeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCCCHHHH
Q 044504 335 SVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQT 414 (525)
Q Consensus 335 ~viia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Had~~~l 414 (525)
+|++||||||.+|.|...|++|++||.|.||+.||++.||.|.++++++..+.+. |+.+.+++.|+++.||+|||..++
T Consensus 319 ~VlFatPGMLhaG~SLkvFK~W~~~~~NlvimPGYcV~GTvG~kvl~G~~kvei~-~~~~eirl~V~~maFSaHaDAkGI 397 (501)
T KOG1136|consen 319 MVLFATPGMLHAGFSLKVFKKWCPDPLNLVIMPGYCVAGTVGHKVLNGATKVEIY-GTKVEIRLKVEYMAFSAHADAKGI 397 (501)
T ss_pred EEEEcCCcccccccchHHHHhhCCCccceEeecCceeccchhhhhhCCccEEEEe-eeEEEEEEEEEEeeeccccCchhH
Confidence 9999999999999999999999999999999999999999999999998877654 999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEeeCc
Q 044504 415 STFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNS 469 (525)
Q Consensus 415 ~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~~ 469 (525)
+++++.+.|++|++||||...|..|++.+.++|+ +.+|+|.|||++.+...+
T Consensus 398 m~li~~csPknVmlVHGE~~kM~~Lk~ki~~e~~---ip~~mPaNGetv~i~s~~ 449 (501)
T KOG1136|consen 398 MQLIKQCSPKNVMLVHGEKSKMKFLKEKIESEFD---IPTFMPANGETVVISSTT 449 (501)
T ss_pred HHHHHhcCcceEEEEeccchhhHHHHHhhHhhcC---CceeeCCCCCEEEecccc
Confidence 9999999999999999999999999999999885 589999999999998875
No 3
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=100.00 E-value=2.5e-88 Score=666.48 Aligned_cols=443 Identities=31% Similarity=0.565 Sum_probs=401.4
Q ss_pred CCCCCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCC--CCCCCCccEEEcCCCchhHhcChHH
Q 044504 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPY 94 (525)
Q Consensus 17 ~~~~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~--~~~~~~Id~IliTH~H~DH~gglp~ 94 (525)
+.-++.++++++||+..|||+||+++++++.++|+|||+.++..+.+..|++. .+.+..+|||+|||+|+||+|-+|+
T Consensus 174 ~~~~~~wvRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~ 253 (637)
T COG1782 174 PLVKDRWVRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPL 253 (637)
T ss_pred ccccCceEEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhh
Confidence 34457899999999999999999999999999999999998766667777764 3455689999999999999999999
Q ss_pred HHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEe-CCEEEEEEeCCCCcC
Q 044504 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLG 173 (525)
Q Consensus 95 l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~gi~v~~~~~gH~~g 173 (525)
|. ++||++|||||+||++++-.++.|++.+...+...++|+.+++..++....+++|++..++ .++++|+++|||.+|
T Consensus 254 Lf-kYgy~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILG 332 (637)
T COG1782 254 LF-KYGYDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILG 332 (637)
T ss_pred hh-hcCCCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhc
Confidence 75 7899999999999999999999999999999999999999999999999999999999999 789999999999999
Q ss_pred ceEEEEEECC--EEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCC--CCCCCChhHHHHHHHHHHHHHHhcCCeEE
Q 044504 174 AAMFMVDIAG--VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYG--VQLHQPRNIREKRFTDVIHSTISQGGRVL 249 (525)
Q Consensus 174 s~~~~i~~~~--~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~--~~~~~~~~~~~~~l~~~i~~~~~~~g~vl 249 (525)
|++..+++++ .+++||||+.+...+++.++....++++.||+||||| ++.++++.+.+++|.+.|++++++||+||
T Consensus 333 SA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvL 412 (637)
T COG1782 333 SAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRDDVQPPREEAEKELIKVINDTLKRGGKVL 412 (637)
T ss_pred ceeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCccccCccHHHHHHHHHHHHHHHHhcCCeEE
Confidence 9999998865 5999999999999999998877778999999999999 66778999999999999999999999999
Q ss_pred EcccchhhHHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHh--cCCCCCCCCCCcccCCcc
Q 044504 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSID 327 (525)
Q Consensus 250 ip~fa~gr~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~pf~~~~~~~~~~~~ 327 (525)
||+||+||.||++..|+++++. +.++..|||+| +|.-++++++..|.+|++.++++.+ .+.|||.-...+.+.+.+
T Consensus 413 IP~fAVGR~QEvM~VLee~mr~-g~ipe~PVYlD-GMI~EatAIhtaYPEyL~~~lr~~I~~~g~NPF~se~f~~V~~~~ 490 (637)
T COG1782 413 IPVFAVGRSQEVMIVLEEAMRK-GLIPEVPVYLD-GMIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFKRVEGSD 490 (637)
T ss_pred EEeeeccccceehhHHHHHHhc-CCCCCCceeee-eeeeehhhhhhcCHHhhhHHHHHHHhcCCCCCccccceeecCChh
Confidence 9999999999999999999875 46788999998 8889999999999999999999885 688999755444444422
Q ss_pred ---c-cCCCCCeEEEeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEee--cC--eeeeeeEE
Q 044504 328 ---D-FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLM--NG--LTAPLNMQ 399 (525)
Q Consensus 328 ---~-~~~~~p~viia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~--~g--~~i~~~~~ 399 (525)
+ .++..||||+||||||++|++..+|+.|+.||+|+++|+|||++||+||++.++++++.+. +| +.+.+++.
T Consensus 491 ~r~~i~~~~ep~iIlaTSGMlnGGPvveyfk~lA~DprntliFVgYQAeGTLGRriq~G~kEipi~~~~G~te~i~inMe 570 (637)
T COG1782 491 ERQEIIESDEPAIILATSGMLNGGPVVEYFKHLAPDPKNTLIFVGYQAEGTLGRRIQSGAKEIPIPGEDGKTEVIKVNME 570 (637)
T ss_pred HHHHHhcCCCCeEEEeccccccCCcHHHHHHHhCCCCCceEEEEEeccCcchhhhhhcCceecccccCCCCeEEEEEEEE
Confidence 2 2567999999999999999999999999999999999999999999999999999987753 34 35788899
Q ss_pred EEEe-ecccCCCHHHHHHHHHhc--CCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 400 VHYI-SFSAHADYAQTSTFLKEL--MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 400 v~~i-~~S~Had~~~l~~~i~~~--~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
|+.+ +||||+|+.||++|++.+ +|++|+++|||+.++..||..+...|. +..++|+|.|++++
T Consensus 571 V~tieGFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~~~lA~si~~~~~---i~t~ap~nLetiR~ 636 (637)
T COG1782 571 VETIEGFSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSKCLDLASSIRRKFK---IETYAPKNLETIRL 636 (637)
T ss_pred EEEecCcCCCccHHHHHHHHHhcCCCCceeEeecCChHHHHHHHHHHHhhcc---eeeeccccccceec
Confidence 9999 899999999999999999 567999999999999999999998774 68999999999986
No 4
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=100.00 E-value=8.3e-82 Score=675.70 Aligned_cols=442 Identities=30% Similarity=0.542 Sum_probs=391.1
Q ss_pred CCCCCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCC--CCCCCCccEEEcCCCchhHhcChHH
Q 044504 17 VSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFD--EIDPSAIDVLLITHFHLDHAASLPY 94 (525)
Q Consensus 17 ~~~~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~--~~~~~~Id~IliTH~H~DH~gglp~ 94 (525)
+..+++.|+|++|||++++|+||++|+.++..||||||+.++.......|.+. .+.+.+||+|||||+|.||+|++|+
T Consensus 168 ~~~~~~~m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~ 247 (630)
T TIGR03675 168 PIFKDRWVRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPL 247 (630)
T ss_pred CCCCCCeEEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHH
Confidence 34466789999999999999999999999999999999976533333344432 2346889999999999999999999
Q ss_pred HHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEe-CCEEEEEEeCCCCcC
Q 044504 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV-NGIKFWCYTAGHVLG 173 (525)
Q Consensus 95 l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~gi~v~~~~~gH~~g 173 (525)
|.. .+++++||+|.+|++++..++.|+.++.......++|+.+++..++..+.+++|++++++ ++++++++++||++|
T Consensus 248 L~k-~g~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilG 326 (630)
T TIGR03675 248 LFK-YGYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILG 326 (630)
T ss_pred HHH-hCCCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccC
Confidence 874 567899999999999999999999887665556688999999998889999999999999 689999999999999
Q ss_pred ceEEEEEECC--EEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCC--CCChhHHHHHHHHHHHHHHhcCCeEE
Q 044504 174 AAMFMVDIAG--VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQL--HQPRNIREKRFTDVIHSTISQGGRVL 249 (525)
Q Consensus 174 s~~~~i~~~~--~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~--~~~~~~~~~~l~~~i~~~~~~~g~vl 249 (525)
|+++.++..+ .+|+||||++...++++.++..+..++|+||+||||+++. |+++.+.+++|.+.|.+++++||+|+
T Consensus 327 sa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VL 406 (630)
T TIGR03675 327 SAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRDDYQPSREEAEKELIKVVNETIKRGGKVL 406 (630)
T ss_pred ceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9999988753 6999999999988888776654456899999999999887 88899999999999999999999999
Q ss_pred EcccchhhHHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHh--cCCCCCCCCCCcccCCcc
Q 044504 250 IPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSID 327 (525)
Q Consensus 250 ip~fa~gr~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~pf~~~~~~~~~~~~ 327 (525)
||+|++||+||++++|+++|+++ .++++|||++| |+.+++++|+.|.+||++.+++.+ ...|||.+++++.+.+.+
T Consensus 407 IP~favGR~QEll~~L~~~~~~g-~lp~~pIy~dg-~~~~~t~i~~~~~e~l~~~~~~~i~~~~~npf~~~~~~~v~~~~ 484 (630)
T TIGR03675 407 IPVFAVGRAQEVMLVLEEAMRKG-LIPEVPVYLDG-MIWEATAIHTAYPEYLNKELRERIFHEGENPFLSEIFVRVEGSD 484 (630)
T ss_pred EEechhHHHHHHHHHHHHHHHhC-CCCCCcEEEEc-hHHHHHHHHHHhHHHhCHHHHHHHhhcCCCcccCCceEEeCCHH
Confidence 99999999999999999999854 56789999996 899999999999999999887764 467999998888777653
Q ss_pred c----cCCCCCeEEEeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecC----eeeeeeEE
Q 044504 328 D----FSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNG----LTAPLNMQ 399 (525)
Q Consensus 328 ~----~~~~~p~viia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g----~~i~~~~~ 399 (525)
+ ....+||||||++|||++|+++++|++|++|++|+|+|+|||++||+||+|+++++++.+. | +.++++|+
T Consensus 485 ~~~~i~~~~~p~VIiatsGMl~gG~~~~~l~~l~~d~kn~IifvGyqa~gTlGr~l~~g~~~i~i~-g~~~~~~i~v~~~ 563 (630)
T TIGR03675 485 ERREIIESDEPAIILATSGMLNGGPVVEYLKLLAPDPRNSLVFVGYQAEGTLGRRIQSGWREIPLT-DEGKTETIKINME 563 (630)
T ss_pred HHHHHhcCCCCEEEEECCCCCCcchHHHHHHHHcCCCCCeEEEeCCCCCCchHHHHhcCCcEEEec-CCCCceEEEEEEE
Confidence 2 2456899999999999999999999999999999999999999999999999998887653 5 89999999
Q ss_pred EEEee-cccCCCHHHHHHHHHhcCC--CeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 400 VHYIS-FSAHADYAQTSTFLKELMP--PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 400 v~~i~-~S~Had~~~l~~~i~~~~P--~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
|+.+. ||||||++||++|++.++| ++|++||||+.++.+|++.|.++++ .++++|+|||+++|
T Consensus 564 V~~~~gfSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~~~la~~l~~~~~---~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 564 VETVEGFSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKILDLASSIYKKFN---IETYAPKNLETIRL 629 (630)
T ss_pred EEEeCCccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHHHHHHHHHHHHhC---CcEEeCCCCCEEEe
Confidence 99995 9999999999999999965 8999999999999999999988875 48999999999987
No 5
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-69 Score=558.67 Aligned_cols=424 Identities=39% Similarity=0.655 Sum_probs=376.4
Q ss_pred EEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCc
Q 044504 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKG 103 (525)
Q Consensus 24 m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~ 103 (525)
|++.++|+++++|++|++++.++..||+|||+.++... ...|... ..+ +||+++|||+|.||+|++|++.... +++
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~-~~~-~vDavllTHaHlDH~g~lp~l~~~~-~~~ 76 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLP-PFP-KVDAVLLTHAHLDHIGALPYLVRNG-FEG 76 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCC-CCC-CcCEEEeccCchhhhcccHHHHHhc-cCC
Confidence 57899999999999999999999999999999987765 5667654 333 8999999999999999999998764 679
Q ss_pred eEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEEEEEECC
Q 044504 104 RVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAG 183 (525)
Q Consensus 104 ~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~~i~~~~ 183 (525)
+||+|++|.++++.++.|..+++.. ...++|++.|++.++..+++++|++++++++++|+++++||++||++|.++.++
T Consensus 77 ~v~aT~~T~~l~~~~l~d~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGsa~~~le~~~ 155 (427)
T COG1236 77 PVYATPPTAALLKVLLGDSLKLAEG-PDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGSAAILLEVDG 155 (427)
T ss_pred ceeeccCHHHHHHHHHHHHHhhhcC-CCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccceeEEEEEeCC
Confidence 9999999999999999999988755 567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccchhhHHHHHH
Q 044504 184 VRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLL 263 (525)
Q Consensus 184 ~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~ 263 (525)
.+|+||||++...++++.+++.+.. +|+||+||||+++.|+++.+.++.|.+.+.+++.+||+|+||+|++||+||||.
T Consensus 156 ~~ilytGD~~~~~~~l~~~a~~~~~-~DvLI~EsTYg~~~~~~r~~~e~~f~~~v~~~l~~GG~vlipafa~graQEll~ 234 (427)
T COG1236 156 GRILYTGDVKRRKDRLLNGAELPPC-IDVLIVESTYGDRLHPNRDEVERRFIESVKAALERGGTVLIPAFALGRAQELLL 234 (427)
T ss_pred ceEEEEeccCCCcCCCCCccccCCC-CcEEEEecccCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEecccccHHHHHHH
Confidence 9999999999999999999886654 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCC-ccccCCCCCeEEEeCCC
Q 044504 264 ILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS-IDDFSDVGPSVVMASPG 342 (525)
Q Consensus 264 ~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~-~~~~~~~~p~viia~~g 342 (525)
+|+++|.+. +.|||++|++++.+..+++.+.+|++....+..... |+.++.... .......+|+||++++|
T Consensus 235 ~L~~~~~~~----~~pi~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~vi~a~~g 306 (427)
T COG1236 235 ILRELGFAG----DYPIYVDGPIARVALAYAKYPIGLDLPDLLKVAESR----FRFVESRRNSMREGIDKGPAVVLAAPG 306 (427)
T ss_pred HHHHHhccC----CCCeEeccHHHHHHHHHHHhchhccChHHHHHHHhh----cccccchhhhhhhhccCCceEEEEecc
Confidence 999998765 799999999999999999999999887766654222 222222221 22335678999999999
Q ss_pred CCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCCCHHHHHHHHHhcC
Q 044504 343 GLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELM 422 (525)
Q Consensus 343 ml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~i~~~~ 422 (525)
|+..|+++.+++.|+.+++|.++++|||++||+++.+++++..+ ...|.+++++++|+.+.||+|+|+.+|.+||+...
T Consensus 307 m~~~g~~~~~~~~~~~~~~n~~~l~~~~~~~t~gr~~~~~~~~~-~~~~~~i~~~~~ve~~~~s~Had~~~l~~~i~~~~ 385 (427)
T COG1236 307 MLKGGRSRYYLKHLLSDEKNWVLLPGYQAEGTLGRVLLEGGTSV-HIKGIEIKVKARVEELDFSAHADGDELLEFIKDIS 385 (427)
T ss_pred cccCCcHHHHHHHHhcCCcceEEEcccccCCcchhHHhcCCcEE-eecceeecccceEEEeccccccCcHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988633 35689999999999999999999999999999999
Q ss_pred CCeEEEecCCHhHHHHHHHHHHHHhccCCc-eEeeCCCCCEEE
Q 044504 423 PPNIILVHGESHEMGRLKTKLMTELADCNT-KIITPKNCQSVE 464 (525)
Q Consensus 423 P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~-~i~~p~~g~~~~ 464 (525)
|++|+++||+...+..+.+.+.+++.. . .+++|.||+.+.
T Consensus 386 ~~~v~~~Hg~~~~~~~~~~~~~~e~~~--~~~~~~p~~~~~~~ 426 (427)
T COG1236 386 PPKVVLVHGEPEYGAALRARLLEELIG--IRELELPANGEEYE 426 (427)
T ss_pred CceEEEEeCCchhhhHHHHHHHHhhCC--cceeecCCCccccC
Confidence 999999999999887777766655432 3 689999998865
No 6
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=3.1e-50 Score=409.70 Aligned_cols=442 Identities=27% Similarity=0.507 Sum_probs=377.9
Q ss_pred EEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCce
Q 044504 25 IITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGR 104 (525)
Q Consensus 25 ~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~ 104 (525)
+++.+-+..+-+.-||+|+.++.+|||||||...+. ...++.+.. -...||+|+|||..+-|+|||||...+.+.+++
T Consensus 3 ~l~~~~g~~de~~~cyllqiD~~~iLiDcGwd~~f~-~~~i~~l~~-~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~ 80 (764)
T KOG1135|consen 3 KLTTLCGATDEGPLCYLLQIDGVRILIDCGWDESFD-MSMIKELKP-VIPTIDAILLSHPDILHLGALPYAVGKLGLNAP 80 (764)
T ss_pred eEEeeccccCCCcceEEEEEcCeEEEEeCCCcchhc-cchhhhhhc-ccccccEEEecCCChHHhccchhhHhhCCccce
Confidence 344443344447899999999999999999976532 222222222 246899999999999999999999999999999
Q ss_pred EEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeC----CEEEEEEeCCCCcCceEEEEE
Q 044504 105 VFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN----GIKFWCYTAGHVLGAAMFMVD 180 (525)
Q Consensus 105 Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----gi~v~~~~~gH~~gs~~~~i~ 180 (525)
||+|-|+..+.+..+.|.......-.+..+|+.+|++.+++++..++|.|++.+. |++|++++|||++|.+.|.|.
T Consensus 81 VYAT~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~ 160 (764)
T KOG1135|consen 81 VYATLPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKIS 160 (764)
T ss_pred EEEecchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEE
Confidence 9999999999999988877655444577899999999999999999999999993 579999999999999999999
Q ss_pred ECCEEEEEeecCCCCCcccCccCCCC-CCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccchhhHH
Q 044504 181 IAGVRVLYTGDYSREEDRHLRAAELP-QFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQ 259 (525)
Q Consensus 181 ~~~~~ilytGD~~~~~~~~~~~~~~~-~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~q 259 (525)
..+.+|+|+-|+++..++|+.+..+. ..+|.+||+++....-..+++..|.+.|.+.|.++++.||+|+||+...||+.
T Consensus 161 k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~~~~~~~rkkRDe~f~d~v~~~L~~~G~VlipVDtAgRvL 240 (764)
T KOG1135|consen 161 KVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHALYSQPRRKKRDEQFLDTVLKTLRSGGNVLIPVDTAGRVL 240 (764)
T ss_pred ecCceEEEEEecccchhcccCCccccccCCcceEEeccccccccccchhHHHHHHHHHHHHHhcCCCcEEEEecccHHHH
Confidence 88899999999999999999987654 46899999998776666678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHh--cCCCCCCCCCCcccCCcccc--CCCCC
Q 044504 260 ELLLILDEYWSNH-PEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF--ANSNPFKFKHISPLNSIDDF--SDVGP 334 (525)
Q Consensus 260 ell~~l~~~~~~~-~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~pf~~~~~~~~~~~~~~--~~~~p 334 (525)
||+.+|+++|.+. +.+..+|+++.|+.+.+...+.+.+.|||++.+.+.| ...|||.|+|+..+.+..++ -+.+|
T Consensus 241 ELa~iLdqlws~~~~gl~~~pl~~Ls~vs~~tveyAKSmiEWmsdkl~k~fe~~r~NpFefrhi~l~~~~~dlsr~p~gp 320 (764)
T KOG1135|consen 241 ELALILDQLWSQSDAGLSQYPLAFLSYVSSRTVEYAKSMIEWMSDKLSKMFEEARNNPFEFRHITLCHSLQDLSRVPPGP 320 (764)
T ss_pred HHHHHHHHHHhcccCCCcccceeeeeccchhHHHHHHHHHHHhhhHHHHhhhhccCCcceeeeeeeecCHHHHhcCCCCC
Confidence 9999999999875 4567799999999999999999999999999999988 46799999999988876655 34579
Q ss_pred eEEEeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCce---eEe-----------------------
Q 044504 335 SVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKE---VTL----------------------- 388 (525)
Q Consensus 335 ~viia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~---~~~----------------------- 388 (525)
+||+||...|..|.++..+-.|+.+++|.|+|+-...+||+++.+++.+.. +..
T Consensus 321 kVVlas~~~lE~Gfsrd~fl~w~~d~~N~illt~r~~~~tLa~el~~~~e~~k~i~l~~r~rv~LeGeEl~ey~~~e~~r 400 (764)
T KOG1135|consen 321 KVVLASVPDLECGFSRDLFLEWASDPRNLILLTERGSPGTLARELISMPERAKRIELKVRKRVKLEGEELLEYLEGERLR 400 (764)
T ss_pred eEEEeeccchhcchhHHHHHHHhcCCcceEEEecCCCchhHHHHHhhcccccceeeeeeecccCCchHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999988999999887654321 000
Q ss_pred --------------------------------------------------------------------------------
Q 044504 389 -------------------------------------------------------------------------------- 388 (525)
Q Consensus 389 -------------------------------------------------------------------------------- 388 (525)
T Consensus 401 ~e~~~~~~~~~~~~~~~~~~Sd~~dd~d~~~~~~~~Hd~~~~~~~~~~~~f~~~~~~~~~MFPy~e~r~k~DdYGEiI~~ 480 (764)
T KOG1135|consen 401 NEDALRLNVNRDVEIDSSHESDDSDDEDMENDTEVRHDIMSKAGKSTKDGFFKSAKSKHPMFPYIEERRKWDDYGEIIKP 480 (764)
T ss_pred hhhhHHhhccCCccccccccCCcccccccccccccchhhhhccCCcccccccccccccCcccCCcHHhccccccccccCH
Confidence
Q ss_pred ----------------------------------------------ecCe-eeeeeEEEEEeecccCCCHHHHHHHHHhc
Q 044504 389 ----------------------------------------------MNGL-TAPLNMQVHYISFSAHADYAQTSTFLKEL 421 (525)
Q Consensus 389 ----------------------------------------------~~g~-~i~~~~~v~~i~~S~Had~~~l~~~i~~~ 421 (525)
+.|+ .+.++|++..|.|-|-+|.+-++.++..+
T Consensus 481 ~df~v~~~~~~~~gak~~~pv~~~~~Ee~~g~~~~~~~~~~~ptk~is~~~~i~vs~~v~~iDyeGisDgrSik~ii~ql 560 (764)
T KOG1135|consen 481 DDFTVIRKEDLKDGAKKNEPVVDNKSEEEDGYSDEIEDLSEVPTKCISGEKGIEVSCRVEKIDYEGISDGRSIKKIIAQL 560 (764)
T ss_pred HHcccccccchhhhhhccCCcccccccccccccCchhhhhcccceeeccccceEEEEEEEEeeeeccccchhHHHHHhcc
Confidence 0011 35678999999999999999999999999
Q ss_pred CCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEeeCc
Q 044504 422 MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNS 469 (525)
Q Consensus 422 ~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~~ 469 (525)
+|+++|+|||.......++...... +...+.+|+|+.||.++++..-
T Consensus 561 ~Pr~lIlvh~s~e~~r~~~~~c~~l-~~~~~~vyaP~~~e~idvtsd~ 607 (764)
T KOG1135|consen 561 SPRKLILVHGSAEDTRDLKHTCASL-GCFTIDVYAPKSGEIIDVTSDV 607 (764)
T ss_pred CccEEEEecCCchhhHHHHHHHHhc-CCCcceeecccccceEEeeehh
Confidence 9999999999999999998877643 3334689999999999997655
No 7
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=100.00 E-value=1.3e-47 Score=400.46 Aligned_cols=389 Identities=18% Similarity=0.238 Sum_probs=281.1
Q ss_pred EEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcC---ccc-cCCCCCCC--CCCCccEEEcCCCchhHhcChHHHHh
Q 044504 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS---GMA-ALPYFDEI--DPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 24 m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~---~~~-~~~~~~~~--~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
+++++||+.+|+|+|||+++.++..+|||||...... +.+ .+|.+..+ ...+|++|||||+|.||+||+|++..
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~ 80 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFH 80 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHH
Confidence 5799999999999999999999999999999853211 111 12333222 35689999999999999999999987
Q ss_pred hcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeC-CEEEEEEeCCCC-cCce
Q 044504 98 KTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHV-LGAA 175 (525)
Q Consensus 98 ~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-gi~v~~~~~gH~-~gs~ 175 (525)
..+ ..+||+++.|..+++..+... . +. ....+..+++++.++++ ++++++++++|+ +||+
T Consensus 81 ~~~-~~~Vy~~~~t~~~l~~~~~~~----~-------~~------~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~ 142 (422)
T TIGR00649 81 TVG-FPPIYGTPLTIALIKSKIKEN----K-------LN------VRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSV 142 (422)
T ss_pred hCC-CCeEEeCHHHHHHHHHHHHhc----C-------CC------CCCceEEeCCCCEEEeCCceEEEEEECCCCCcceE
Confidence 642 368999999988776543310 0 00 00246778899999995 699999999996 7999
Q ss_pred EEEEEECCEEEEEeecCCCCCcccCc-cC------CCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHH-hcCCe
Q 044504 176 MFMVDIAGVRVLYTGDYSREEDRHLR-AA------ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI-SQGGR 247 (525)
Q Consensus 176 ~~~i~~~~~~ilytGD~~~~~~~~~~-~~------~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~-~~~g~ 247 (525)
+|.++.++++++||||+......... .. +....++|+||+||||+..... ...+..+.+.+.+++ +.+|+
T Consensus 143 g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~--~~~e~~~~~~i~~~~~~~~~~ 220 (422)
T TIGR00649 143 GFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGF--TPSEAKVLEQLNDIFKNAKGR 220 (422)
T ss_pred EEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCC--CCCHHHHHHHHHHHHHhCCCE
Confidence 99999999999999999876544321 11 1123479999999999974432 233455666677766 57899
Q ss_pred EEEcccc--hhhHHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCC
Q 044504 248 VLIPAFA--LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNS 325 (525)
Q Consensus 248 vlip~fa--~gr~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~ 325 (525)
+++++|+ ++|+|+++.++.++ ++||++++.+..+.+++++++ .+++ .|-. .....+.
T Consensus 221 viv~~fa~~~~R~~~i~~~a~~~--------~r~v~v~g~~~~~~~~~~~~~-g~~~----------~~~~--~~~~~~~ 279 (422)
T TIGR00649 221 VIVATFASNIHRVQQLIQIARKQ--------GRKFAVYGRSMEHLFGIARRL-GLIK----------NPHN--NFISLKE 279 (422)
T ss_pred EEEEEccccHHHHHHHHHHHHHh--------CCEEEEECccHHHHHHHHHHc-CCcc----------CCcc--ceeCHHH
Confidence 9999999 99999999988875 789999988888887776553 2221 1100 0111112
Q ss_pred ccccCCCCCeEEEeCCCCCCCChHHHHHHHHcCC--------CCCcEEecccCCCCChh---HHhhcCCceeEeecCeee
Q 044504 326 IDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSD--------KKNACVIPGYVVEGTLA---KTIISEPKEVTLMNGLTA 394 (525)
Q Consensus 326 ~~~~~~~~p~viia~~gml~~g~~~~~~~~~~~~--------~~n~ii~~gy~~~gt~~---~~l~~~~~~~~~~~g~~i 394 (525)
+++. .++++||++|++ ++++ ...+.+++.+ +.|+|||+....+|+.- .++++ |...
T Consensus 280 i~~~-~~~~~vii~tg~--~g~~-~~~l~~~~~~~~~~i~l~~~d~vi~s~~~~~G~~~~~~~~~~~---------~~~~ 346 (422)
T TIGR00649 280 VNNS-PDENYLIITTGS--QGEP-YAALTRIANNEHEQIRIRKGDTVVFSAPPIPGNENIAVSILLD---------IRLN 346 (422)
T ss_pred HhcC-CcccEEEEEeCC--CCcH-HHHHHHHhCCCCCcEEeCCCCEEEEECCCCCcHHHHHHHHHHH---------HHHH
Confidence 2222 236799999877 5566 6666667664 45899999666666541 12222 1111
Q ss_pred eeeEEEEE-eecccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEee
Q 044504 395 PLNMQVHY-ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYF 467 (525)
Q Consensus 395 ~~~~~v~~-i~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~ 467 (525)
...+++.. +++||||+++||+.|++.++|+++||||||++++..+++.++ +.|.++.++++|+||++++|..
T Consensus 347 ~~~~~~~~~~h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~~~~~~a~-~~g~~~~~~~~~~nG~~~~~~~ 419 (422)
T TIGR00649 347 EVGARVIKRIHVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLINHTKLAE-EEGYPGENIFILRNGDVLEING 419 (422)
T ss_pred hcCCEEEeceEecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHHHHHHHHH-HcCCCcccEEEecCCcEEEecC
Confidence 22344433 899999999999999999999999999999999999999775 4465455899999999999864
No 8
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=100.00 E-value=5.1e-44 Score=373.26 Aligned_cols=432 Identities=16% Similarity=0.228 Sum_probs=305.5
Q ss_pred CCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCc---Ccccc-CCCCCC--CCCCCccEEEcCCCchhHhcChHH
Q 044504 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY---SGMAA-LPYFDE--IDPSAIDVLLITHFHLDHAASLPY 94 (525)
Q Consensus 21 ~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~---~~~~~-~~~~~~--~~~~~Id~IliTH~H~DH~gglp~ 94 (525)
.+.++|++|||-+|+|+||+++++++..+++|||..... .+.+. +|++.. -...+|++|||||+|.||+|++|+
T Consensus 6 ~~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ 85 (555)
T COG0595 6 KAKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPY 85 (555)
T ss_pred CCceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHH
Confidence 478999999999999999999999999999999987431 12222 455433 245789999999999999999999
Q ss_pred HHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCC-cC
Q 044504 95 FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHV-LG 173 (525)
Q Consensus 95 l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~-~g 173 (525)
++.+.. ..|||+++.|.++++..+.+... ......+..++.+..++++++.+++++..|+ |+
T Consensus 86 ll~~~~-~~piy~s~lt~~Li~~k~~~~~~----------------~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPd 148 (555)
T COG0595 86 LLKQVL-FAPIYASPLTAALIKEKLKEHGL----------------FKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPD 148 (555)
T ss_pred HHhcCC-cCceecCHhhHHHHHHHHHHhcc----------------ccccCceEEeCCCCeEEeCcEEEEEEeecccCcc
Confidence 998754 38999999999999877663211 1112467889999999999999999999999 68
Q ss_pred ceEEEEEECCEEEEEeecCCCCCcccCcc-------CCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHH-hcC
Q 044504 174 AAMFMVDIAGVRVLYTGDYSREEDRHLRA-------AELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTI-SQG 245 (525)
Q Consensus 174 s~~~~i~~~~~~ilytGD~~~~~~~~~~~-------~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~-~~~ 245 (525)
|+++.++++.+.|+|||||....++.... +++...++++||+|||....+..+ .+|+...+.+.+++ ...
T Consensus 149 s~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~pg~t--~SE~~v~~~l~~i~~~a~ 226 (555)
T COG0595 149 SLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENPGFT--PSESEVGENLEDIIRNAK 226 (555)
T ss_pred ceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCCCCC--CCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887665421 223356899999999998865433 33445555555555 358
Q ss_pred CeEEEcccc--hhhHHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCccc
Q 044504 246 GRVLIPAFA--LGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPL 323 (525)
Q Consensus 246 g~vlip~fa--~gr~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~ 323 (525)
|+|++.+|+ ++|+|.++.+..+. ++++.+.+..+.+...+-++..- ++ ...+.| ...
T Consensus 227 grVIv~tfaSni~Ri~~i~~~A~~~--------gR~vvv~GrSm~~~~~~a~~lg~-~~-------~~~~~~-----i~~ 285 (555)
T COG0595 227 GRVIVTTFASNIERIQTIIDAAEKL--------GRKVVVTGRSMERLIAIARRLGY-LK-------LPDESF-----IEI 285 (555)
T ss_pred CcEEEEEchhhHHHHHHHHHHHHHc--------CCeEEEEcHhHHHHHHHHhhccc-cc-------Cccccc-----cCH
Confidence 999999999 99999999988864 78888887666555443333110 00 111111 122
Q ss_pred CCccccCCCCCeEEEeC--CCCCCCChHHHHHH---HHcCCCCCcEEecccCCCCChh--HHhhcCCceeEeecCeeeee
Q 044504 324 NSIDDFSDVGPSVVMAS--PGGLQSGLSRQLFD---IWCSDKKNACVIPGYVVEGTLA--KTIISEPKEVTLMNGLTAPL 396 (525)
Q Consensus 324 ~~~~~~~~~~p~viia~--~gml~~g~~~~~~~---~~~~~~~n~ii~~gy~~~gt~~--~~l~~~~~~~~~~~g~~i~~ 396 (525)
+..+.+.+. ..+|+++ .|++.+.+++..-. .|...+.+++||+...++|+.. .++++. ....|..+..
T Consensus 286 ~~~~~~~~~-~~lii~TG~qgep~aaL~r~a~~~h~~~~i~~gD~vIfss~~ipgne~~~~~~~n~----l~~~g~~i~~ 360 (555)
T COG0595 286 REVKRYPDE-EVLIICTGSQGEPMAALSRMANGEHRYVKIKEGDTVIFSSSPIPGNEAAVYRLLNR----LYKAGAKVIT 360 (555)
T ss_pred HHhcccccc-ceEEEEeCCCCCchhhhhHhhcCCccceecCCCCeEEEeccCcCCcHHHHHHHHHH----HHhcCcEEee
Confidence 223333333 3555555 35555556655543 2456789999999999999643 233332 1123433332
Q ss_pred eEEEEEeecccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEeeCccchhhhh
Q 044504 397 NMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTI 476 (525)
Q Consensus 397 ~~~v~~i~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~~~~~~~~~ 476 (525)
.. ...+|.|||++++|++.|++.++|+++||||||++++..+++...+. +....++++++||+.+++.....+.+.
T Consensus 361 ~~-~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~a~la~~~-G~~~~~i~i~~nG~v~~l~~~~~~~~~-- 436 (555)
T COG0595 361 GG-DKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAHAKLAEEE-GIPQENIFILRNGDVLELEGGKARVIG-- 436 (555)
T ss_pred cc-cceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHHHHHHHHHhc-CCCcccEEEecCceEEEecCCcccccC--
Confidence 21 25679999999999999999999999999999999999999876543 554458999999999999876643333
Q ss_pred hhhhccCCccCCeEEeEEEeeCCcccccCc
Q 044504 477 GRLAEKTPEVGETVSGILVKKGFTYQIMAP 506 (525)
Q Consensus 477 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 506 (525)
.+ +.....++|..+...++..+.++
T Consensus 437 -~v----~~g~~~iDg~~~gdvg~~vl~dR 461 (555)
T COG0595 437 -KV----PAGDVYIDGNGIGDVGAIVLRDR 461 (555)
T ss_pred -cc----ccCCeEEcCCCCCcchhhHHHHH
Confidence 22 33444455444444433333333
No 9
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1.1e-34 Score=286.02 Aligned_cols=415 Identities=20% Similarity=0.298 Sum_probs=305.1
Q ss_pred CCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHHHHHHHHHHHHhhhcc-----------------------
Q 044504 72 DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKV----------------------- 128 (525)
Q Consensus 72 ~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~----------------------- 128 (525)
+.+.||+|+||..| ..-|||++.+..||.++||+|++|.++.+.++++.+...+.
T Consensus 93 d~stiDvILISNy~--~mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpspl 170 (653)
T KOG1138|consen 93 DASTIDVILISNYM--GMLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSPL 170 (653)
T ss_pred cccceeEEEEcchh--hhcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCCc
Confidence 45689999999999 79999999999999999999999999999988876654221
Q ss_pred ------ccCCCCCCHHHHHHHhcccEEecCCcEEEeC-CEEEEEEeCCCCcCceEEEEEECCEEEEEeecCCCCCcccCc
Q 044504 129 ------SVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLR 201 (525)
Q Consensus 129 ------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-gi~v~~~~~gH~~gs~~~~i~~~~~~ilytGD~~~~~~~~~~ 201 (525)
..|..+|+.+|++.++.++..+.|.|++++- -+.+++...||.+||+.|.|....+++.|..+.+.... |..
T Consensus 171 k~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltt-h~r 249 (653)
T KOG1138|consen 171 KKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTT-HPR 249 (653)
T ss_pred hhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCccccc-CCc
Confidence 1367889999999999999999999999994 69999999999999999999999999999999875332 222
Q ss_pred cC-CCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcccchhhHHHHHHHHHHHHhcCCCCCCCCE
Q 044504 202 AA-ELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPI 280 (525)
Q Consensus 202 ~~-~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~~~~~~~~~pI 280 (525)
+. ..+....|+||+-+--.-. .....+..-+|+..+..+.+++|.|++||++.|-+.++++.+.+...+. .+.+.|+
T Consensus 250 ~md~a~Lk~~Dvli~T~lsql~-tanpd~m~gelc~nvt~~~rn~GsvL~PcyPsGviydl~Ecls~~idna-~ls~~P~ 327 (653)
T KOG1138|consen 250 PMDQAGLKETDVLIYTGLSQLP-TANPDEMGGELCKNVTLTGRNHGSVLLPCYPSGVIYDLIECLSQDIDNA-GLSDTPI 327 (653)
T ss_pred cccccccccccEEEEecccccc-cCCccchhhhHHHHHHHHhhcCCceeeeccCCchhhHHHHHhhhccccc-CCcCCcc
Confidence 22 2235689999984422111 1223455678999999999999999999999999999999999887654 3458999
Q ss_pred EEEChhHHHHHHHHHHhHHhhHHHHHHH-hcCCCCCCCCCCcccCCccc-------c--CCCCCeEEEeCCCCCCCChHH
Q 044504 281 YYASPLAKKCMAVYQTYILSMNERIRNQ-FANSNPFKFKHISPLNSIDD-------F--SDVGPSVVMASPGGLQSGLSR 350 (525)
Q Consensus 281 ~~~s~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~pf~~~~~~~~~~~~~-------~--~~~~p~viia~~gml~~g~~~ 350 (525)
|+.||.|...+++.+...||+....+.. +.+..||.-..+.....++. + +-+.|||+++++.+++.|...
T Consensus 328 yfISpvadSsla~s~ilaEwls~akqnkvylpe~p~~hs~lI~~~rlkiy~sl~g~fSndfrqpcvvf~~H~SlRfgdv~ 407 (653)
T KOG1138|consen 328 YFISPVADSSLATSDILAEWLSLAKQNKVYLPEAPFPHSTLITINRLKIYLSLLGLFSNDFRQPCVVFMGHPSLRFGDVV 407 (653)
T ss_pred eEecccchhhhhHHHHHHHHHHhhhccceeccCCCCCCceEEeecceeehHHHHHHHhhhcccceeEecCCcchhhhHHH
Confidence 9999999999999999999999877655 47778875444433332221 1 457899999999999999999
Q ss_pred HHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCCCHHHHHHHHHhcCCCeEEEec
Q 044504 351 QLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVH 430 (525)
Q Consensus 351 ~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~i~~~~P~~vi~vH 430 (525)
|+++-|..+|+|+|||+....+--.+ + . -..++.+++.++++-..-++.++.++++.++|++|+. -
T Consensus 408 h~~e~~g~sp~NsvI~tdpD~~~~~v---l-~---------PfrpLamK~i~cpidtrlnfqql~kLlkelqPk~vlc-p 473 (653)
T KOG1138|consen 408 HFLECWGLSPKNSVIFTDPDFSYLLV---L-A---------PFRPLAMKIIYCPIDTRLNFQQLPKLLKELQPKIVLC-P 473 (653)
T ss_pred HHHHHhcCCCCCceEEeCCCCchhhh---h-c---------CCccccceeEeccccccccHHHHHHHHHHhCCCEEEC-h
Confidence 99999999999999998653332211 1 1 1234557888899999999999999999999986554 3
Q ss_pred CCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEeeCcc-chhhhhhhhhc----cCCc----cCCeEEeEEEeeCCcc
Q 044504 431 GESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSE-KMAKTIGRLAE----KTPE----VGETVSGILVKKGFTY 501 (525)
Q Consensus 431 Ge~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~~~-~~~~~~~~l~~----~~~~----~~~~~~~~l~~~~~~~ 501 (525)
-.+.+-.-++....-.+.. -..+..-+-+|.+.+.+++. ....+...||. .... .-..+.|+|..+|+.+
T Consensus 474 eaytqp~~~ap~~~i~~~d-~~pi~t~~c~ei~~lp~Krkl~~veItpela~kLs~ke~~~~~~~iAtl~~~L~~~d~kh 552 (653)
T KOG1138|consen 474 EAYTQPIPLAPIKTISILD-YFPIKTLHCPEIVDLPNKRKLVSVEITPELASKLSPKELRQGEFGIATLKGVLLMKDGKH 552 (653)
T ss_pred hhhcCCCCccchheehhcc-ccccceeehhHHhcCccccceeEEEEcHHHHhhCChhhccCceeEEEEEEEEEEEecCce
Confidence 3332222222211111110 11244445555555553331 11112222322 1111 2367999999999999
Q ss_pred cccCc
Q 044504 502 QIMAP 506 (525)
Q Consensus 502 ~~~~~ 506 (525)
+++..
T Consensus 553 ~Lvp~ 557 (653)
T KOG1138|consen 553 RLVPA 557 (653)
T ss_pred eeeec
Confidence 99873
No 10
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=99.88 E-value=2e-22 Score=175.18 Aligned_cols=122 Identities=38% Similarity=0.649 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHHhcCCCCCCCCCCcccCCcccc----CCCC
Q 044504 258 AQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDF----SDVG 333 (525)
Q Consensus 258 ~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~~~~~~pf~~~~~~~~~~~~~~----~~~~ 333 (525)
+|||+++|+++|+++....++|||++|+++.+++++|+++.+|+++.+.+.+.....+.|+++..+++.++. ...+
T Consensus 1 ~qEll~~L~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (126)
T PF10996_consen 1 AQELLLILDEYWKEGKLPRDVPIYVDSPMAAKVLEYYKSYPEWLSESIQRKFEDKEDNPFDNFKFVKSVDESKELNALSG 80 (126)
T ss_dssp HHHHHHHHHHHHCTTSSGTTSEEEEESTCHHHHHHHHHHCGGGS-HHHHHHHHTTSTTTTTTEEEEESHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHhCCCCCCCcEEEEChHHHHHHHHHHHHHHHHCHHHHHHHHhcCCCCCCCeEEecccccccccccCCC
Confidence 699999999999987533579999999999999999999999999987766632221134555555544322 1358
Q ss_pred CeEEEeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHh
Q 044504 334 PSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTI 379 (525)
Q Consensus 334 p~viia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l 379 (525)
|+||||++|||++|++++++++|+.|++|+|||+||+.+||+|++|
T Consensus 81 p~Vvias~gml~~G~s~~~l~~~~~d~~n~Ii~~gy~~~~T~g~~l 126 (126)
T PF10996_consen 81 PKVVIASSGMLEGGRSRHYLKRLASDPRNTIIFTGYQAPGTLGRRL 126 (126)
T ss_dssp SEEEEESSTTSSSSHHHHHHHHHTTSTTSEEEESSS--TTSHHHHH
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHcCCCCCeEEEecCCCCCCccccC
Confidence 9999999999999999999999999999999999999999999875
No 11
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.85 E-value=1.6e-20 Score=183.00 Aligned_cols=167 Identities=20% Similarity=0.298 Sum_probs=122.5
Q ss_pred EEEEEecCCCc------------------c-----CCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEE
Q 044504 24 LIITPLGAGNE------------------V-----GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLL 80 (525)
Q Consensus 24 m~i~~LG~~~e------------------v-----g~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~Il 80 (525)
||+++||+|+. . ..+|++|+.++..||||||... ... .+.+.+||+||
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~----~~~-----~~~~~~i~~i~ 71 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPD----LAE-----RFPPGSLQQIL 71 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChH----Hhh-----cCCcccCCEEE
Confidence 89999998886 2 3589999999999999999531 111 23467899999
Q ss_pred cCCCchhHhcChHHHHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhccc-EEecCCcEEEeC
Q 044504 81 ITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKI-EVLDFHQTVEVN 159 (525)
Q Consensus 81 iTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 159 (525)
|||.|.||++|++.+......+.+||++..+..+... ..... . ..+ ..++.++.+.++
T Consensus 72 iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~~~-----~~~~~------------~----~~~~~~l~~~~~~~~~ 130 (250)
T PRK11244 72 LTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCDDL-----FKHPG------------I----LDFSHPLEPFEPFDLG 130 (250)
T ss_pred EccCchhhhccHHHHHhhcCCceeEEeCCchhhHHHH-----hcCcc------------c----cccccccCCCCCeeEC
Confidence 9999999999998875433345689998876432211 10000 0 011 245677889999
Q ss_pred CEEEEEEeCCCCcCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCC
Q 044504 160 GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 160 gi~v~~~~~gH~~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~ 222 (525)
+++|++++..|+.++++|.|+.++++++|+||+...++....... ..++|+||+|+||...
T Consensus 131 ~~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~--~~~~Dlli~e~~~~~~ 191 (250)
T PRK11244 131 GLQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTVGLPEDTLKFLR--NNQPDLLVLDCSHPPQ 191 (250)
T ss_pred CEEEEEEeeCCCcceeEEEEecCCeEEEEEcCCCCCCHHHHHHHh--cCCCCEEEEeCcCCCC
Confidence 999999999999999999999999999999999865443322111 2379999999999744
No 12
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.83 E-value=5.3e-20 Score=184.32 Aligned_cols=173 Identities=24% Similarity=0.319 Sum_probs=124.5
Q ss_pred EEEEecCCCc-----cCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhc
Q 044504 25 IITPLGAGNE-----VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT 99 (525)
Q Consensus 25 ~i~~LG~~~e-----vg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~ 99 (525)
+|++||+++. .+.+|++|+.++..+|||||.+. ........+++.+|++|||||.|.||++|++.++...
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~-----~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~ 75 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGT-----QRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTM 75 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHH-----HHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhh
Confidence 5899999985 46799999999999999999531 1111111345678999999999999999999887532
Q ss_pred C-----CCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCc-EEEeCCEEEEEEeCCCCcC
Q 044504 100 T-----FKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQ-TVEVNGIKFWCYTAGHVLG 173 (525)
Q Consensus 100 ~-----~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~gi~v~~~~~gH~~g 173 (525)
. .+.+||++..+.+.++..+..+. ....|. -.+..+..++ .+..++++|++++.-|...
T Consensus 76 ~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~~~~~~~v~~~~~~H~~~ 140 (299)
T TIGR02651 76 SFQGRKEPLTIYGPPGIKEFIETSLRVSY-------TYLNYP--------IKIHEIEEGGLVFEDDGFKVEAFPLDHSIP 140 (299)
T ss_pred ccCCCCceEEEECCccHHHHHHHHHHHcc-------cCCCce--------EEEEEccCCCceEecCCEEEEEEEcCCCCc
Confidence 1 14579999988776554332110 000010 1345566666 5888999999999999989
Q ss_pred ceEEEEEEC--------------------------------------------------CEEEEEeecCCCCCcccCccC
Q 044504 174 AAMFMVDIA--------------------------------------------------GVRVLYTGDYSREEDRHLRAA 203 (525)
Q Consensus 174 s~~~~i~~~--------------------------------------------------~~~ilytGD~~~~~~~~~~~~ 203 (525)
+++|.|+.+ +.+++|+||+...+.. ...
T Consensus 141 ~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~~~-~~~- 218 (299)
T TIGR02651 141 SLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCEEV-IEF- 218 (299)
T ss_pred eEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChHHH-HHH-
Confidence 999999864 4689999999875432 222
Q ss_pred CCCCCCCcEEEEcCCCCCC
Q 044504 204 ELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 204 ~~~~~~~D~LI~Esty~~~ 222 (525)
..++|+||+||||...
T Consensus 219 ---~~~~dlLi~E~~~~~~ 234 (299)
T TIGR02651 219 ---AKNADLLIHEATFLDE 234 (299)
T ss_pred ---HcCCCEEEEECCCCch
Confidence 2379999999999864
No 13
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.81 E-value=3.1e-19 Score=178.84 Aligned_cols=172 Identities=19% Similarity=0.239 Sum_probs=122.6
Q ss_pred EEEecCCCcc-----CCcEEEEEEC----CeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHH
Q 044504 26 ITPLGAGNEV-----GRSCVYMSYK----GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFL 96 (525)
Q Consensus 26 i~~LG~~~ev-----g~s~~ll~~~----~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~ 96 (525)
+++||+++.+ +.+|++|+.+ +..+|||||.+. ........+++.+||+|||||.|.||++|++.|+
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~-----~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll 75 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGT-----QHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLL 75 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccH-----HHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHH
Confidence 5799999743 5699999874 378999999642 1111112456789999999999999999999876
Q ss_pred hhc-----CCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCC
Q 044504 97 EKT-----TFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHV 171 (525)
Q Consensus 97 ~~~-----~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~ 171 (525)
... ..+.+||+++.+.+.++..+.- ... . ..| ...+..+..++.+..++++|++++..|.
T Consensus 76 ~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~----~~~--~-~~~--------~~~~~~i~~~~~~~~~~~~v~~~~~~H~ 140 (303)
T TIGR02649 76 CSRSMSGIIQPLTIYGPQGIREFVETALRI----SGS--W-TDY--------PLEIVEIGAGEILDDGLRKVTAYPLEHP 140 (303)
T ss_pred HHHHhcCCCCCeEEEechhHHHHHHHHHHh----ccc--c-cCC--------ceEEEEcCCCceEecCCeEEEEEEccCc
Confidence 421 1246899999988766544321 100 0 001 0234566667778778899999999999
Q ss_pred cCceEEEEEE--------------------------------------------------CCEEEEEeecCCCCCcccCc
Q 044504 172 LGAAMFMVDI--------------------------------------------------AGVRVLYTGDYSREEDRHLR 201 (525)
Q Consensus 172 ~gs~~~~i~~--------------------------------------------------~~~~ilytGD~~~~~~~~~~ 201 (525)
..+++|.|+. ++.+++|+||+...+. ...
T Consensus 141 ~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~~~~-~~~ 219 (303)
T TIGR02649 141 LECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA-ALD 219 (303)
T ss_pred cceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCChHH-HHH
Confidence 9999999985 4578999999987433 222
Q ss_pred cCCCCCCCCcEEEEcCCCCCC
Q 044504 202 AAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 202 ~~~~~~~~~D~LI~Esty~~~ 222 (525)
. ..++|+||+||||.+.
T Consensus 220 ~----~~~adlLi~Eat~~~~ 236 (303)
T TIGR02649 220 L----AKGVDVMVHEATLDIT 236 (303)
T ss_pred H----hcCCCEEEEeccCChh
Confidence 2 3489999999999654
No 14
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.80 E-value=1.5e-18 Score=167.86 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=114.0
Q ss_pred ccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHH
Q 044504 34 EVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 113 (525)
Q Consensus 34 evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~ 113 (525)
...++|++|+.++..+|||||... .. ..+.+.+||+|||||.|.||++|++.+....+.+.+||+++.+..
T Consensus 24 ~r~~~s~~i~~~~~~iliD~G~~~----~~-----~~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~~~~ 94 (238)
T TIGR03307 24 RRQPCSAVIEFNGARTLIDAGLTD----LA-----ERFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEG 94 (238)
T ss_pred cCcceEEEEEECCcEEEEECCChh----Hh-----hccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCchHhh
Confidence 345789999999999999999531 11 123457899999999999999999877554344678999987653
Q ss_pred HHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEEEEEECCEEEEEeecCC
Q 044504 114 IYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193 (525)
Q Consensus 114 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~~i~~~~~~ilytGD~~ 193 (525)
+.. ..+... + ......+..++.+.+++++|+++++.|..++++|.|+.++++++|+||+.
T Consensus 95 ~~~-----~~~~~~------------~---~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 95 CDD-----LFKHPG------------I---LDFSKPLEAFEPFDLGGLRVTPLPLVHSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred HHH-----HhcCcc------------c---ccccccccCCceEEECCEEEEEEecCCCCcceEEEEecCCcEEEEEecCC
Confidence 211 111000 0 00112366788899999999999999999999999999999999999997
Q ss_pred CCCcccCccCCCCCCCCcEEEEcCCCCCC
Q 044504 194 REEDRHLRAAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~D~LI~Esty~~~ 222 (525)
..++....... ..++|+||+|++|...
T Consensus 155 ~~~~~~~~~~~--~~~~D~li~e~~~~~~ 181 (238)
T TIGR03307 155 GLPPDTEAFLK--NHPLDVLILDCSHPPQ 181 (238)
T ss_pred CCCHHHHHHHh--cCCCCEEEEeCCcCcc
Confidence 54443222221 2379999999999643
No 15
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=99.79 E-value=4.6e-18 Score=172.60 Aligned_cols=296 Identities=22% Similarity=0.315 Sum_probs=194.1
Q ss_pred CCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCC
Q 044504 74 SAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFH 153 (525)
Q Consensus 74 ~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 153 (525)
..+.+-|+||+|.||..||..-+ -.+++||+..|..+....+. ++ ...+..++.+
T Consensus 111 ~~~s~yFLsHFHSDHy~GL~~sW----~~p~lYCS~ita~Lv~~~~~--------------v~-------~~~i~~l~l~ 165 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGLTKSW----SHPPLYCSPITARLVPLKVS--------------VT-------KQSIQALDLN 165 (481)
T ss_pred cccceeeeecccccccccccccc----cCCcccccccchhhhhhhcc--------------cC-------hhhceeecCC
Confidence 46788999999999999986532 14569999999988765433 11 1457889999
Q ss_pred cEEEeCCEEEEEEeCCCCcCceEEEEEECCE-EEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCC--CChhHH
Q 044504 154 QTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV-RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH--QPRNIR 230 (525)
Q Consensus 154 ~~~~~~gi~v~~~~~gH~~gs~~~~i~~~~~-~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~--~~~~~~ 230 (525)
+.+.+.++.++++++.|++|+++|.++.... ++++||||+...+....++......+|.+..|+||.++.. +++++.
T Consensus 166 ~~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLDtTycnp~y~Fpsq~es 245 (481)
T KOG1361|consen 166 QPLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLDTTYCNPKYDFPSQEES 245 (481)
T ss_pred CceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEeecccCCCCCCccHHHH
Confidence 9999999999999999999999999997654 9999999999887765443333468999999999998864 556677
Q ss_pred HHHHHHHHHHHHhcC--CeEEEcccchhhHHHHHHHHHHHHhcCCCCCCCCEEEEChhHHHHHHHHHHhHHhhHHHHHHH
Q 044504 231 EKRFTDVIHSTISQG--GRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQ 308 (525)
Q Consensus 231 ~~~l~~~i~~~~~~~--g~vlip~fa~gr~qell~~l~~~~~~~~~~~~~pI~~~s~~a~~~~~~~~~~~~~~~~~~~~~ 308 (525)
.+...+.+......+ --++|+++.+|+-.-++++...+ +.+||+. ++-...+ ++
T Consensus 246 vq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~~eia~~l--------~~kI~v~-~~~~~~~---------------~~ 301 (481)
T KOG1361|consen 246 VQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLLLEIARIL--------NSKIWVE-PRRLRLL---------------QC 301 (481)
T ss_pred HHHHHHHHHhhhhhCCceEEEEEEEecchhHHHHHHHHHh--------CCceEEe-hhhchhh---------------hh
Confidence 777777776665543 33577899999966666555554 7899987 2211111 11
Q ss_pred hcCCCCCCCCCCcccCCccccCCCCCeEEEeCCCCCC-CChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCc-ee
Q 044504 309 FANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQ-SGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPK-EV 386 (525)
Q Consensus 309 ~~~~~pf~~~~~~~~~~~~~~~~~~p~viia~~gml~-~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~-~~ 386 (525)
+...+++. .+. .+ ..+-.|-+++-..+. .-..+.+.... .+..+ .++|+...|+.-+.+++..+ ..
T Consensus 302 lg~~d~~~--~~s--~d-----~~~ssvhv~~~~~l~~~~~l~~~~~~~-~~~~s--~~v~~~~tgwt~~~~~s~~~~~~ 369 (481)
T KOG1361|consen 302 LGFDDESK--LLS--ID-----VDESSVHVVPMNSLASSPSLKEYESQY-EDGYS--KLVGFSPTGWTKGKLVSLDKENS 369 (481)
T ss_pred cCCCChhh--hhc--cc-----cccCceeEeehhhhccccchhhhhccc-ccCcc--eeEeecccccccccccccCcccc
Confidence 11111111 010 11 123355555443333 22223332221 11111 23344444443333332221 11
Q ss_pred EeecCeeeeeeEEEEEeecccCCCHHHHHHHHHhcCCCeEEEecCCHh
Q 044504 387 TLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434 (525)
Q Consensus 387 ~~~~g~~i~~~~~v~~i~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~ 434 (525)
+...|+ ++.+..+++|.|+.+.+|.+|++.++|+.||++-++..
T Consensus 370 ~~~~~~----~i~~~~vpYseHSs~~el~~f~~~lk~k~iiptv~~~~ 413 (481)
T KOG1361|consen 370 RPQSGS----KIPISLVPYSEHSSYTELSEFLSKLKPKTIIPTVNEDT 413 (481)
T ss_pred cccccc----ccccccccccccCCHHHHHHHHHhcCCCeeecCccCCc
Confidence 112233 35567789999999999999999999999999999987
No 16
>PRK00055 ribonuclease Z; Reviewed
Probab=99.78 E-value=1.5e-18 Score=171.21 Aligned_cols=181 Identities=24% Similarity=0.309 Sum_probs=113.4
Q ss_pred cEEEEEecCCCcc-----CCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHh
Q 044504 23 QLIITPLGAGNEV-----GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 23 ~m~i~~LG~~~ev-----g~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
||+|++||+|+.. +++|++|+.++..+|||||.+.. ..+ ....+++.+||+|||||.|.||++|++.+..
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~----~~l-~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~ 75 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQ----RQL-LKTGIKPRKIDKIFITHLHGDHIFGLPGLLS 75 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHH----HHH-HHcCCCHHHCCEEEEeCCCchhhCcHHHHHH
Confidence 6999999999864 58999999999999999995321 111 1113566889999999999999999998874
Q ss_pred hc-----CCCceEEecHHHHHHHHHHHHHHHhh--hc-cccCCCCCCHHHHHHH-h---cccEEecCCcEEEeCCEEEEE
Q 044504 98 KT-----TFKGRVFMTHATKAIYKLLLTDYVKV--SK-VSVEDMLFDEQDINRS-M---DKIEVLDFHQTVEVNGIKFWC 165 (525)
Q Consensus 98 ~~-----~~~~~Iy~t~~t~~~~~~~l~d~~~~--~~-~~~~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~gi~v~~ 165 (525)
.. ..+.+||+++.+.+.+..++.-+... .- .......+........ . ..+..+..+.++.+
T Consensus 76 ~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------- 148 (270)
T PRK00055 76 TRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKALGVPPGPLFGKLKRGEDVTL------- 148 (270)
T ss_pred HhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHHCCCCCCchHHHhhCCCeEEe-------
Confidence 32 12457999998887765543321100 00 0000112332221100 0 00111122222222
Q ss_pred EeCCCC--cCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCC
Q 044504 166 YTAGHV--LGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 166 ~~~gH~--~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~ 222 (525)
.+|. .++.++.++.++++++|+||+...+.. ... ..++|+||+||+|...
T Consensus 149 --~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~~~-~~~----~~~~d~li~E~~~~~~ 200 (270)
T PRK00055 149 --EDGRIINPADVLGPPRKGRKVAYCGDTRPCEAL-VEL----AKGADLLVHEATFGDE 200 (270)
T ss_pred --CCCcEEeHHHeeccCCCCcEEEEeCCCCCcHHH-HHH----hCCCCEEEEeccCCcc
Confidence 2333 367888888889999999999875432 111 2379999999999765
No 17
>PRK02113 putative hydrolase; Provisional
Probab=99.78 E-value=3.7e-18 Score=166.64 Aligned_cols=199 Identities=16% Similarity=0.174 Sum_probs=129.1
Q ss_pred EEEEEecCCCcc---------------------CCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcC
Q 044504 24 LIITPLGAGNEV---------------------GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLIT 82 (525)
Q Consensus 24 m~i~~LG~~~ev---------------------g~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliT 82 (525)
|++++||+|+.- .++|++|+.++..+|||||.+.. ..+. ..++.+||+||||
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~----~~l~---~~~~~~id~I~lT 73 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFR----EQML---RLPFGKIDAVLIT 73 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHH----HHHH---hcCccccCEEEEC
Confidence 688888866522 34789999999999999995321 1111 1245789999999
Q ss_pred CCchhHhcChHHHHhhc-CCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCE
Q 044504 83 HFHLDHAASLPYFLEKT-TFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGI 161 (525)
Q Consensus 83 H~H~DH~gglp~l~~~~-~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi 161 (525)
|.|.||++|++.+.... ..+.+||+++.+.+.+...+.... ....|. .+. ..++..++.++.++++++
T Consensus 74 H~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~-------~~~~~~--~~~--~~~~~~~~~g~~~~~~~~ 142 (252)
T PRK02113 74 HEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPYCF-------VEHSYP--GVP--NIPLREIEPDRPFLVNHT 142 (252)
T ss_pred CCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCeee-------ccCCCC--CCc--ceeeEEcCCCCCEEECCe
Confidence 99999999999875321 235789999987665543211000 000011 000 124567788899999999
Q ss_pred EEEEEeCCCC-cCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCC--CCCChhHHHHHHHHHH
Q 044504 162 KFWCYTAGHV-LGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ--LHQPRNIREKRFTDVI 238 (525)
Q Consensus 162 ~v~~~~~gH~-~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~--~~~~~~~~~~~l~~~i 238 (525)
+|++++..|. ..+++|.+ ++++|+||+...++..... ..++|+||+|+++... .|.+. ++..+.+
T Consensus 143 ~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt~~~~~~~~~~----~~~~DlLi~e~~~~~~~~~H~t~----~~a~~~~ 210 (252)
T PRK02113 143 EVTPLRVMHGKLPILGYRI----GKMAYITDMLTMPEEEYEQ----LQGIDVLVMNALRIAPHPTHQSL----EEALENI 210 (252)
T ss_pred EEEEEEecCCCccEEEEEe----CCEEEccCCCCCCHHHHHH----hcCCCEEEEhhhcCCCCCCcCCH----HHHHHHH
Confidence 9999999997 46788888 4799999998654433222 3489999999987322 12222 2233333
Q ss_pred HHHHhcCCeEEEcccc
Q 044504 239 HSTISQGGRVLIPAFA 254 (525)
Q Consensus 239 ~~~~~~~g~vlip~fa 254 (525)
.++ +-.++++..++
T Consensus 211 ~~~--~~k~l~l~H~s 224 (252)
T PRK02113 211 KRI--GAKETYLIHMS 224 (252)
T ss_pred HHh--CCCEEEEEccc
Confidence 332 34566666665
No 18
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.76 E-value=7.8e-18 Score=167.75 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=109.4
Q ss_pred CCcEEEEEECC-eEEEEecCCCCCcCccccCCC---CCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHH
Q 044504 36 GRSCVYMSYKG-KTILFDCGIHPAYSGMAALPY---FDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHAT 111 (525)
Q Consensus 36 g~s~~ll~~~~-~~iLiD~G~~~~~~~~~~~~~---~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t 111 (525)
.++|++|+.++ ..||||||.+.... +..... ..+++..+||+|||||.|.||++|++.|.. +.+.+||+++.+
T Consensus 38 ~~ss~li~~~g~~~iLiD~G~g~~~q-l~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~--~~~l~Vyg~~~~ 114 (302)
T PRK05184 38 TQSSIAVSADGEDWVLLNASPDIRQQ-IQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE--GQPFPVYATPAV 114 (302)
T ss_pred cccEEEEEcCCCEEEEEECChhHHHH-HHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc--CCCeEEEeCHHH
Confidence 45889998766 46999999542111 111110 113456789999999999999999999854 347799999998
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeC---CEEEEEEeCCCC-------------cCce
Q 044504 112 KAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN---GIKFWCYTAGHV-------------LGAA 175 (525)
Q Consensus 112 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---gi~v~~~~~gH~-------------~gs~ 175 (525)
.+.+..... +... ...| . .-.+..+..++.++++ +++|++++..|. ..++
T Consensus 115 ~~~l~~~~~-~f~~------~~~~------~-~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~ 180 (302)
T PRK05184 115 LEDLSTGFP-IFNV------LDHY------G-GVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNI 180 (302)
T ss_pred HHHHHhcCC-cccc------cccc------c-ceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeE
Confidence 776543110 0000 0001 0 0134567777788886 899999998653 5689
Q ss_pred EEEEE--ECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCC
Q 044504 176 MFMVD--IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY 219 (525)
Q Consensus 176 ~~~i~--~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty 219 (525)
+|.|+ .++++++|++|....++...... .++|+||+|+++
T Consensus 181 gyri~~~~~g~~~~y~tD~~~~~~~~~~~~----~gaDlli~da~~ 222 (302)
T PRK05184 181 GLRIEDRATGKRLFYAPGLAEVTDALRARL----AGADCVLFDGTL 222 (302)
T ss_pred EEEEEecCCCcEEEEECCCCCCCHHHHHHH----hcCCEEEEeCCC
Confidence 99995 77889999988754444433333 379999999984
No 19
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.75 E-value=1.5e-17 Score=164.98 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=110.9
Q ss_pred CCcEEEEEE-CCeEEEEecCCCCCcCccccCCCC---CCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHH
Q 044504 36 GRSCVYMSY-KGKTILFDCGIHPAYSGMAALPYF---DEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHAT 111 (525)
Q Consensus 36 g~s~~ll~~-~~~~iLiD~G~~~~~~~~~~~~~~---~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t 111 (525)
.+++++|+. ++..||||||.+.... +.....+ .++++.+||+|||||.|.||+.||+.|.++ .+.+||+++.|
T Consensus 37 ~rss~ll~~~g~~~iLID~Gpd~r~q-l~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~--~~lpVya~~~t 113 (302)
T TIGR02108 37 TQSSIAVSADGERWVLLNASPDIRQQ-IQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREG--QPFTLYATEMV 113 (302)
T ss_pred cccEEEEEeCCCEEEEEECCHHHHHH-HHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCC--CCceEEECHHH
Confidence 468899966 5569999999642111 1111111 146678999999999999999999998643 47899999998
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeC-----CEEEEEEeCC--------C------Cc
Q 044504 112 KAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-----GIKFWCYTAG--------H------VL 172 (525)
Q Consensus 112 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----gi~v~~~~~g--------H------~~ 172 (525)
.+.+.. .. .|.. +.........+..++.+.++ +++|++++.. | ..
T Consensus 114 ~~~L~~-~~-------------~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~ 177 (302)
T TIGR02108 114 LQDLSD-NP-------------IFNV--LDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPG 177 (302)
T ss_pred HHHHHh-CC-------------Cccc--cchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCC
Confidence 776532 00 0110 00001123556667777663 5999999988 5 13
Q ss_pred CceEEEEEEC--CEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCC
Q 044504 173 GAAMFMVDIA--GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTY 219 (525)
Q Consensus 173 gs~~~~i~~~--~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty 219 (525)
.+++|.|+.+ +++++|++|++..++...... .++|+||+|++|
T Consensus 178 ~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l----~~~d~liida~~ 222 (302)
T TIGR02108 178 DTLGLKIEDGTTGKRLFYIPGCAEITDDLKARM----AGADLVFFDGTL 222 (302)
T ss_pred CcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHH----hCCCEEEEeCCC
Confidence 6889999988 899999999986555443332 378999999994
No 20
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.69 E-value=8.9e-18 Score=166.01 Aligned_cols=188 Identities=24% Similarity=0.346 Sum_probs=115.1
Q ss_pred cEEEEEecCCCc-----cCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHh
Q 044504 23 QLIITPLGAGNE-----VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 23 ~m~i~~LG~~~e-----vg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
+|++++||+++. ...++++|+.++..+|||||.+ .........+.+.+|++|||||.|.||+.||+.++.
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeG-----t~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~ 75 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEG-----TQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLV 75 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHh-----HHHHHHHhcCChhhccEEEeeccccchhcCcHHHHH
Confidence 589999999986 5679999999999999999953 322222224566799999999999999999998765
Q ss_pred hcCC-----CceEEecHHHHHHHHHHHHHHHhhhcc-----ccCCCCCCH--HHHHHHhcccEEecCC--cEEEeC----
Q 044504 98 KTTF-----KGRVFMTHATKAIYKLLLTDYVKVSKV-----SVEDMLFDE--QDINRSMDKIEVLDFH--QTVEVN---- 159 (525)
Q Consensus 98 ~~~~-----~~~Iy~t~~t~~~~~~~l~d~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~i~~~--~~~~~~---- 159 (525)
...+ +..||.+...++.....+.-....... +.....|.. ..+. ..+..+.|. +....+
T Consensus 76 ~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~---h~~~~~~y~~~e~~~~~~~~~ 152 (292)
T COG1234 76 SRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELD---HGVPALGYRIEEPDRPGRFDA 152 (292)
T ss_pred HhhccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEecC---CCccccceeeecCCCcCcCCH
Confidence 4322 247999988876665544221110000 000000000 0000 000001110 000011
Q ss_pred --------CEEEEEEeCCCC----cCceEEEEEE--CCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCC
Q 044504 160 --------GIKFWCYTAGHV----LGAAMFMVDI--AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQL 223 (525)
Q Consensus 160 --------gi~v~~~~~gH~----~gs~~~~i~~--~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~ 223 (525)
+..++.+..+|+ .-...+.+.. .|.+|+|+||++..+..... + .++|+||+||||.+..
T Consensus 153 ~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~~~~~~-a----~~aDlLiHEat~~~~~ 225 (292)
T COG1234 153 EKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCDELIDL-A----KGADLLIHEATFEDDL 225 (292)
T ss_pred HHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCHHHHHH-h----cCCCEEEEeccCCchh
Confidence 566667788888 4444444433 45799999999987664322 2 4899999999997654
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.67 E-value=1.7e-15 Score=145.66 Aligned_cols=153 Identities=24% Similarity=0.272 Sum_probs=110.8
Q ss_pred EEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCc
Q 044504 24 LIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKG 103 (525)
Q Consensus 24 m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~ 103 (525)
|++++|| .+|++|+.++.+|||||+.... . . .+. .....++|+|++||.|.||++++..+..+ .+.
T Consensus 1 m~i~~lG------~s~~li~~~~~~iLiDP~~~~~-~-~--~~~--~~~~~~id~vliTH~H~DH~~~~~~~~~~--~~~ 66 (228)
T PRK00685 1 MKITWLG------HSAFLIETGGKKILIDPFITGN-P-L--ADL--KPEDVKVDYILLTHGHGDHLGDTVEIAKR--TGA 66 (228)
T ss_pred CEEEEEc------ceEEEEEECCEEEEECCCCCCC-C-C--CCC--ChhcCcccEEEeCCCCccccccHHHHHHh--CCC
Confidence 7899997 5899999999999999976311 0 0 111 11223799999999999999998876543 367
Q ss_pred eEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcC----------
Q 044504 104 RVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLG---------- 173 (525)
Q Consensus 104 ~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~g---------- 173 (525)
++|++..+.+.+... ...++..++.++.+++++++|+++++.|...
T Consensus 67 ~v~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~ 122 (228)
T PRK00685 67 TVIANAELANYLSEK------------------------GVEKTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYL 122 (228)
T ss_pred EEEEeHHHHHHHHhc------------------------CCCceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccC
Confidence 899987655432210 0124567788889999999999999988753
Q ss_pred --ceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcC
Q 044504 174 --AAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIES 217 (525)
Q Consensus 174 --s~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Es 217 (525)
..+|.|+.++++++|+||+...++..... + ..++|++++..
T Consensus 123 ~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~-~--~~~~D~~~~~~ 165 (228)
T PRK00685 123 GNPTGFVITFEGKTIYHAGDTGLFSDMKLIG-E--LHKPDVALLPI 165 (228)
T ss_pred CCceEEEEEECCeEEEEecCccchhHHHHHH-H--hhCCCEEEEec
Confidence 58999999999999999998765432111 1 13679999854
No 22
>PRK02126 ribonuclease Z; Provisional
Probab=99.67 E-value=9.8e-16 Score=154.11 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=113.9
Q ss_pred CCcEEEEEEC--CeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhc---CCCceEEecHH
Q 044504 36 GRSCVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT---TFKGRVFMTHA 110 (525)
Q Consensus 36 g~s~~ll~~~--~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~---~~~~~Iy~t~~ 110 (525)
..|||++..+ +..+|||||. ...+. .....+|++||+||.|.||++|++.|+... .-..+||+++.
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~------~~~l~---~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~ 85 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD------LHHLP---PRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPG 85 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC------HHHHh---hcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHH
Confidence 4699999864 7899999994 22211 225578999999999999999999997653 12468999999
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCHH--HH-----H-----------HHhcccEEecCCcEEEeCCEEEEEEeCCCCc
Q 044504 111 TKAIYKLLLTDYVKVSKVSVEDMLFDEQ--DI-----N-----------RSMDKIEVLDFHQTVEVNGIKFWCYTAGHVL 172 (525)
Q Consensus 111 t~~~~~~~l~d~~~~~~~~~~~~~~~~~--~~-----~-----------~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~ 172 (525)
+.+.+...+..+..... ....+.|... .+ . ...........+..+..++++|++++.-|..
T Consensus 86 ~~~~l~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v 164 (334)
T PRK02126 86 FADQVEHKLAGYTWNLV-ENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI 164 (334)
T ss_pred HHHHHHHHhccccccCc-ccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCC
Confidence 99988776542210000 0000001000 00 0 0000001122344466689999999999999
Q ss_pred CceEEEEEE-------------------------------------------------------------------CCEE
Q 044504 173 GAAMFMVDI-------------------------------------------------------------------AGVR 185 (525)
Q Consensus 173 gs~~~~i~~-------------------------------------------------------------------~~~~ 185 (525)
.+++|.|+. .+.+
T Consensus 165 p~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ 244 (334)
T PRK02126 165 PCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQK 244 (334)
T ss_pred ceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCE
Confidence 999999984 2558
Q ss_pred EEEeecCCCCCcc---cCccCCCCCCCCcEEEEcCCCCCC
Q 044504 186 VLYTGDYSREEDR---HLRAAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 186 ilytGD~~~~~~~---~~~~~~~~~~~~D~LI~Esty~~~ 222 (525)
++|+||+...++. +... ..++|+||+||||...
T Consensus 245 v~y~gDT~~~~~~~~~l~~~----a~~aDlLI~Eat~~~~ 280 (334)
T PRK02126 245 IGYVTDIGYTEENLARIVEL----AAGVDLLFIEAVFLDE 280 (334)
T ss_pred EEEECCCCCCcccHHHHHHH----HcCCCEEEEEcccChH
Confidence 9999999977642 2222 2489999999999764
No 23
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.66 E-value=5.3e-16 Score=143.15 Aligned_cols=145 Identities=25% Similarity=0.329 Sum_probs=101.1
Q ss_pred ccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHH
Q 044504 34 EVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 113 (525)
Q Consensus 34 evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~ 113 (525)
+.++||++|+.++..+|||||..........+. ...+.+|++|++||.|.||++|++.+... .+.+||++..+.+
T Consensus 3 ~~~~~~~li~~~~~~iliD~g~~~~~~~~~~l~---~~~~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~~~~~ 77 (183)
T smart00849 3 GVGVNSYLVEGDGGAILIDTGPGEAEDLLAELK---KLGPKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPEGTAE 77 (183)
T ss_pred ccceeEEEEEeCCceEEEeCCCChhHHHHHHHH---HcCchhhcEEEecccCcchhccHHHHHhC--CCCcEEEchhhhH
Confidence 456899999999999999999543211111122 22367899999999999999999998776 4678999888776
Q ss_pred HHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEe-CCCCcCceEEEEEECCEEEEEeecC
Q 044504 114 IYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAMFMVDIAGVRVLYTGDY 192 (525)
Q Consensus 114 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~-~gH~~gs~~~~i~~~~~~ilytGD~ 192 (525)
.+...... . +...........+..+..++++.+++.+++++. +||++|+++++++ +.+++|+||+
T Consensus 78 ~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~--~~~vl~~gD~ 143 (183)
T smart00849 78 LLKDLLKL----G--------GALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLP--EGKILFTGDL 143 (183)
T ss_pred HHhccchh----c--------cccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEEC--CCCEEEECCe
Confidence 55432111 0 000001111134567788899999887777754 5999999987764 4789999999
Q ss_pred CCCCc
Q 044504 193 SREED 197 (525)
Q Consensus 193 ~~~~~ 197 (525)
.....
T Consensus 144 ~~~~~ 148 (183)
T smart00849 144 LFSGG 148 (183)
T ss_pred eeccC
Confidence 86554
No 24
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.62 E-value=1.3e-15 Score=142.34 Aligned_cols=154 Identities=25% Similarity=0.349 Sum_probs=103.0
Q ss_pred eEEEEecCCCCCcC-ccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcC-CCceEEecHHHHHHHHHHHHHHHh
Q 044504 47 KTILFDCGIHPAYS-GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT-FKGRVFMTHATKAIYKLLLTDYVK 124 (525)
Q Consensus 47 ~~iLiD~G~~~~~~-~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~-~~~~Iy~t~~t~~~~~~~l~d~~~ 124 (525)
.+||||||.+.. + .+...+.....+..+||+|||||.|.||+.|++.+..... ...+||+++.+.+.+.........
T Consensus 1 ~~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~ 79 (194)
T PF12706_consen 1 HRILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGILD 79 (194)
T ss_dssp SEEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHHT
T ss_pred CEEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhccccc
Confidence 379999997432 0 0110011101122389999999999999999887765321 122899999998877632000000
Q ss_pred hhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceE----EEEEECCEEEEEeecCCCCCcccC
Q 044504 125 VSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAM----FMVDIAGVRVLYTGDYSREEDRHL 200 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~----~~i~~~~~~ilytGD~~~~~~~~~ 200 (525)
.+... ....+..+..++.+++++++|+++++.|..++.+ |.|+.++.+++|+||+.. + +
T Consensus 80 ---------~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~--~--~ 142 (194)
T PF12706_consen 80 ---------LYPEE----DNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY--D--F 142 (194)
T ss_dssp ---------TCCTT----SGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS--C--H
T ss_pred ---------ccccc----cceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEecCCcceEEeeccch--h--h
Confidence 00000 0134567778889999999999999999998887 999999999999999998 2 1
Q ss_pred ccCCCCCCCCcEEEEcCCCCCC
Q 044504 201 RAAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 201 ~~~~~~~~~~D~LI~Esty~~~ 222 (525)
..+ .++|++|+|+++...
T Consensus 143 --~~~--~~~D~li~~~~~~~~ 160 (194)
T PF12706_consen 143 --EEL--KNIDLLILECGYIDE 160 (194)
T ss_dssp --HHH--TTBSEEEEEBCBSSG
T ss_pred --hhh--ccCCEEEEeCCCcch
Confidence 111 479999999999843
No 25
>PRK04286 hypothetical protein; Provisional
Probab=99.60 E-value=1.9e-14 Score=143.14 Aligned_cols=185 Identities=16% Similarity=0.171 Sum_probs=107.2
Q ss_pred EEEEEecCCCc-cCCcEEEEEECCeEEEEecCCCCCcC--ccccCCC----------CCCCCCCCccEEEcCCCchhHhc
Q 044504 24 LIITPLGAGNE-VGRSCVYMSYKGKTILFDCGIHPAYS--GMAALPY----------FDEIDPSAIDVLLITHFHLDHAA 90 (525)
Q Consensus 24 m~i~~LG~~~e-vg~s~~ll~~~~~~iLiD~G~~~~~~--~~~~~~~----------~~~~~~~~Id~IliTH~H~DH~g 90 (525)
|++.+||+++. +..||++|+.++.+||||+|...... +....|. .-.....+||+||+||.|.||++
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 78999998663 23499999999999999999542111 1111111 00123568999999999999998
Q ss_pred ChHHHHhhc---CCCceEEecHHHHHHHH-HHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE
Q 044504 91 SLPYFLEKT---TFKGRVFMTHATKAIYK-LLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY 166 (525)
Q Consensus 91 glp~l~~~~---~~~~~Iy~t~~t~~~~~-~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~ 166 (525)
++..+.... .++.++|.+..+..... ..+ +....... ..+ ...+.. ......+..++.+.+++++|++.
T Consensus 81 g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~-~~~~~~~~----~~~-~~~v~~-~~~~~~~~~g~~~~ig~~~V~~~ 153 (298)
T PRK04286 81 PFYEDPYELSDEEIPKEIYKGKIVLIKDPTENI-NWSQRRRA----PRF-LKAVKD-IAKKIEYADGKTFRFGGTTIEFS 153 (298)
T ss_pred CccccccccccccchHHHhcCceecccCHHHHc-CHHHHhhH----HhH-HHHHHh-cCCceEECCCCEEEECCEEEEEe
Confidence 876642110 11245665544431000 000 00000000 000 011111 11234566788899999999976
Q ss_pred -eCCCCcC--ceE----EEEEECCEEEEEeecCC-CCCcccCccCCCCCCCCcEEEEcC
Q 044504 167 -TAGHVLG--AAM----FMVDIAGVRVLYTGDYS-REEDRHLRAAELPQFSPDICIIES 217 (525)
Q Consensus 167 -~~gH~~g--s~~----~~i~~~~~~ilytGD~~-~~~~~~~~~~~~~~~~~D~LI~Es 217 (525)
+..|... +.+ +.|+.++++++|+||+. ...+....... ..++|+|++++
T Consensus 154 ~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~--~~d~dlLi~~~ 210 (298)
T PRK04286 154 PPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEFIL--EKKPDVVIIGG 210 (298)
T ss_pred ccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHh--cCCCCEEEeCC
Confidence 6789632 444 45578899999999999 43333222211 23899999998
No 26
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.55 E-value=1.2e-13 Score=132.86 Aligned_cols=213 Identities=14% Similarity=0.047 Sum_probs=129.0
Q ss_pred EEEEECCeEEEEe-cCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhc--C---C-CceEEecHHHH
Q 044504 40 VYMSYKGKTILFD-CGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT--T---F-KGRVFMTHATK 112 (525)
Q Consensus 40 ~ll~~~~~~iLiD-~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~--~---~-~~~Iy~t~~t~ 112 (525)
..+-+....||+| +|.+.. ... .-....++.|||||.|.||+||++.+.-.. . - ...||.++.+.
T Consensus 12 t~~~~~~~~ilfD~ag~g~~-----~~l---~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~ 83 (277)
T TIGR02650 12 STIIYSPEEIIFDAAEEGSS-----TLG---GKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGN 83 (277)
T ss_pred EEEEECchhheehhhcccch-----hHH---hhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchh
Confidence 3444567889999 885321 110 113467899999999999999997654421 1 1 24599999888
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeC-C---EEEEEEeCCCCc---CceEEEEEE----
Q 044504 113 AIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-G---IKFWCYTAGHVL---GAAMFMVDI---- 181 (525)
Q Consensus 113 ~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-g---i~v~~~~~gH~~---gs~~~~i~~---- 181 (525)
+..+.++.-...... .....-.+..++.++.+... + ..|+++...|.. .|.+|.|..
T Consensus 84 ~~ve~~~~~~~~~~~------------~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~K 151 (277)
T TIGR02650 84 AAEEETSEFIKAANE------------DLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKK 151 (277)
T ss_pred HHHHHHHHHHHHhhh------------hhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeec
Confidence 876644322111110 01111133455666666665 3 889999999995 577777753
Q ss_pred ----------------------------CCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCC--hhHHH
Q 044504 182 ----------------------------AGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQP--RNIRE 231 (525)
Q Consensus 182 ----------------------------~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~--~~~~~ 231 (525)
...+++||||+...+. .. ..++|+||+||||.+..... .....
T Consensus 152 LK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~---~~----a~~adlLIhEaTf~d~~~~~~~gH~t~ 224 (277)
T TIGR02650 152 KEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADD---EE----EEGGEELIHECCFFDDADDRRKKHAAA 224 (277)
T ss_pred chHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCCh---HH----hcCCCEEEEecccccccccccCCCCCH
Confidence 1268999999987643 11 34899999999997764321 01111
Q ss_pred HHHHHHHHHHHhcCCeEEEcccchhhHHHHH-HHHHHHHhcCCCCCCCCEEEEC
Q 044504 232 KRFTDVIHSTISQGGRVLIPAFALGRAQELL-LILDEYWSNHPEFHNIPIYYAS 284 (525)
Q Consensus 232 ~~l~~~i~~~~~~~g~vlip~fa~gr~qell-~~l~~~~~~~~~~~~~pI~~~s 284 (525)
.+..+...+ ....++++..|+.-|..+++ .+++...++ ++.+||++.-
T Consensus 225 ~eaa~~A~~--a~vk~LiLtH~Ssry~~~~~~~~~~~~~~~---~~~~~~~~~~ 273 (277)
T TIGR02650 225 DDEMEESKK--AAGKKKIILHHISRRIIRILKSIIKKREEE---MDDEEILMDD 273 (277)
T ss_pred HHHHHHHHH--cCCCEEEEEeecccccHHHHHHHHHHHHhh---cCccceeccC
Confidence 222222222 24667788888766666664 555555332 3468887753
No 27
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.54 E-value=2.1e-14 Score=132.77 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=104.7
Q ss_pred ccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHH
Q 044504 34 EVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 113 (525)
Q Consensus 34 evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~ 113 (525)
+.+.|||+|+.++..+|||||.......... ......+..+|++||+||.|.||+||++.|.++.. ...+++......
T Consensus 3 ~~~~n~~li~~~~~~iliD~G~~~~~~~~~~-~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~-~~~~~~~~~~~~ 80 (194)
T PF00753_consen 3 EGGSNSYLIEGGDGAILIDTGLDPDFAKELE-LALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP-VVIIYSSADAAK 80 (194)
T ss_dssp SEEEEEEEEEETTEEEEESEBSSHHHHHHHH-HHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT-EEEEEEHHHHHH
T ss_pred CeeEEEEEEEECCEEEEEeCCCCchhhHHhh-hhHhhccCCCeEEEEECcccccccccccccccccc-eeeeeccccccc
Confidence 3467999999999999999998643221110 01124567899999999999999999999988753 233343333333
Q ss_pred HHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEEEEEECCEEEEEeecCC
Q 044504 114 IYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYS 193 (525)
Q Consensus 114 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~~i~~~~~~ilytGD~~ 193 (525)
.............. ...................+........+|..++..+.+..++++++|+||..
T Consensus 81 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~ 147 (194)
T PF00753_consen 81 AIRPPDRDSASRRG-------------PAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLL 147 (194)
T ss_dssp HHHHHHHHHHHHHH-------------HHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTS
T ss_pred cccccccccccccc-------------cccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEe
Confidence 32222211111000 01111222333334444433333333445555555566666889999999998
Q ss_pred CCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEc
Q 044504 194 REEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIP 251 (525)
Q Consensus 194 ~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip 251 (525)
.......... + ....+.. ...........+.+.+..+....+++|
T Consensus 148 ~~~~~~~~~~-------~----~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ii~ 192 (194)
T PF00753_consen 148 FSNEHPNPDP-------D----LPLRGAD--VRYGSNWEESIEALRRLEALDPEVIIP 192 (194)
T ss_dssp CTTTSSSSST-------S----HTTTTHT--TSHTTHHHHHHHHHHHHHTSTTSEEEE
T ss_pred ccCCcccccc-------c----ccccccc--ccCcHHHHHHHHHHHHHHCCCCCEEEe
Confidence 7554332211 1 1111111 112223345556667777777777776
No 28
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.48 E-value=1e-12 Score=132.84 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=108.7
Q ss_pred CCCcEEEEEecCCCccCCcEEEEEE-CCeEEEEec----CCCC-------------CcCcccc-CCCCCC-------CCC
Q 044504 20 EGDQLIITPLGAGNEVGRSCVYMSY-KGKTILFDC----GIHP-------------AYSGMAA-LPYFDE-------IDP 73 (525)
Q Consensus 20 ~~~~m~i~~LG~~~evg~s~~ll~~-~~~~iLiD~----G~~~-------------~~~~~~~-~~~~~~-------~~~ 73 (525)
+.+.+++++|| .++++|+. ++.+||+|. |... ...+... .|.+.. ...
T Consensus 34 ~~~~~~~~wlG------~a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i 107 (355)
T PRK11709 34 PPGTFAMWWLG------CTGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAI 107 (355)
T ss_pred CCCcEEEEEec------ceEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHC
Confidence 34789999995 46699998 688999994 2100 0011111 122111 134
Q ss_pred CCccEEEcCCCchhHhc--ChHHHHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEec
Q 044504 74 SAIDVLLITHFHLDHAA--SLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLD 151 (525)
Q Consensus 74 ~~Id~IliTH~H~DH~g--glp~l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 151 (525)
.+||+||+||.|.||+. .+..+....+.+.+++++..+.+++... + +. ..++..++
T Consensus 108 ~~IDaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~--------G------------vp--~~rv~~v~ 165 (355)
T PRK11709 108 REIDAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGW--------G------------VP--KERCIVVK 165 (355)
T ss_pred CCCCEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhc--------C------------CC--cceEEEec
Confidence 68999999999999994 3444444332346788877765543211 0 00 13678899
Q ss_pred CCcEEEeCCEEEEEEeCCC-----------Cc-----------CceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCC
Q 044504 152 FHQTVEVNGIKFWCYTAGH-----------VL-----------GAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS 209 (525)
Q Consensus 152 ~~~~~~~~gi~v~~~~~gH-----------~~-----------gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~ 209 (525)
.++.+.+++++|+++++-| .. .+++|+|+.++++++|+||+...+....... ..+
T Consensus 166 ~Ge~i~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~---~~~ 242 (355)
T PRK11709 166 PGDVVKVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGN---DHQ 242 (355)
T ss_pred CCCcEEECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHh---cCC
Confidence 9999999999999998843 21 2478999999999999999997543221111 226
Q ss_pred CcEEEEcC
Q 044504 210 PDICIIES 217 (525)
Q Consensus 210 ~D~LI~Es 217 (525)
+|++++..
T Consensus 243 iDvall~i 250 (355)
T PRK11709 243 IDVALGSY 250 (355)
T ss_pred CCEEEecC
Confidence 89999854
No 29
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.47 E-value=1.6e-13 Score=142.30 Aligned_cols=130 Identities=19% Similarity=0.271 Sum_probs=94.1
Q ss_pred cCCcEEEEEECCeEEEEecCCCCCcCcc-ccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHH
Q 044504 35 VGRSCVYMSYKGKTILFDCGIHPAYSGM-AALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 113 (525)
Q Consensus 35 vg~s~~ll~~~~~~iLiD~G~~~~~~~~-~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~ 113 (525)
...|||+|.. ++.+|||||........ ..+. ..+++.+||+|++||.|.||+||++.+.+..+ +.+||+++.+..
T Consensus 31 ~~~NsyLI~~-~~~vLIDtg~~~~~~~~~~~l~--~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p-~a~V~~~~~~~~ 106 (394)
T PRK11921 31 SSYNSYLIKD-EKTVLIDTVWQPFAKEFVENLK--KEIDLDKIDYIVANHGEIDHSGALPELMKEIP-DTPIYCTKNGAK 106 (394)
T ss_pred eEEEEEEEeC-CCEEEEeCCCCCcHHHHHHHHH--hhcCcccCCEEEeCCCCCchhhHHHHHHHHCC-CCEEEECHHHHH
Confidence 3569999974 67899999964321111 1111 12356789999999999999999999987643 679999998766
Q ss_pred HHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEe-CC-CCcCceEEEEEECCEEEEEeec
Q 044504 114 IYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AG-HVLGAAMFMVDIAGVRVLYTGD 191 (525)
Q Consensus 114 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~-~g-H~~gs~~~~i~~~~~~ilytGD 191 (525)
.+..... . + ..+..+..++++++++.+++++. +| |++|+++++++ +.+++||||
T Consensus 107 ~l~~~~~----------------~-~-----~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~--~~~vLFsgD 162 (394)
T PRK11921 107 SLKGHYH----------------Q-D-----WNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT--GDNILFSND 162 (394)
T ss_pred HHHHHhC----------------C-C-----CceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc--CCCEEEecC
Confidence 5432100 0 0 13466788999999999999874 44 99999998884 567999999
Q ss_pred C
Q 044504 192 Y 192 (525)
Q Consensus 192 ~ 192 (525)
+
T Consensus 163 ~ 163 (394)
T PRK11921 163 A 163 (394)
T ss_pred c
Confidence 6
No 30
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.42 E-value=4.3e-12 Score=123.99 Aligned_cols=169 Identities=19% Similarity=0.314 Sum_probs=120.7
Q ss_pred CCCCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHh
Q 044504 18 SREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 18 ~~~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
...+. .++.++..|+ +..++++.++..+++|+|... .....+|++......+||.+++||.|.||+||++.+++
T Consensus 39 ~~~~~-~~~~~lDvGq---g~a~li~~~~~~~l~dtg~~~--~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~ 112 (293)
T COG2333 39 APSNG-WKVHMLDVGQ---GLATLIRSEGKTILYDTGNSM--GQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLK 112 (293)
T ss_pred ccCCC-ceEEEEEcCC---CeEEEEeeCCceEEeecCccc--CceeehhhHhHcCCccccEEEeccCCccccCCHHHHHh
Confidence 33444 7888898887 577999999999999999752 23345788888888999999999999999999999998
Q ss_pred hcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCC-CC-----
Q 044504 98 KTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG-HV----- 171 (525)
Q Consensus 98 ~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~g-H~----- 171 (525)
.+.++ .+|+..+...-....+. +.........-++.+.++++.++++.+. ..
T Consensus 113 ~~~v~-~~~i~~~~~~~~~~~~~---------------------~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N 170 (293)
T COG2333 113 TIKVP-ELWIYAGSDSTSTFVLR---------------------DAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLN 170 (293)
T ss_pred hCCCC-cEEEeCCCCccchhhhh---------------------hcCCceeccccCceEEECCeEEEEEcCCcccccccc
Confidence 65432 45544332221111011 1112445667788999999999987443 33
Q ss_pred cCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEE
Q 044504 172 LGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICII 215 (525)
Q Consensus 172 ~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~ 215 (525)
-.|+.++++.++.++++|||.....+..+.. ..+..++|+|..
T Consensus 171 ~~S~Vl~v~~g~~s~LlTGD~e~~~E~~l~~-~~~~l~~dVLkV 213 (293)
T COG2333 171 NDSCVLRVTFGGNSFLLTGDLEEKGEKLLKK-YGPDLRADVLKV 213 (293)
T ss_pred CcceEEEEEeCCeeEEEecCCCchhHHHHHh-hCCCccceEEEe
Confidence 2689999999999999999999877643332 223457889886
No 31
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.40 E-value=8.5e-13 Score=128.36 Aligned_cols=131 Identities=17% Similarity=0.171 Sum_probs=91.1
Q ss_pred EEEEEecCCCccCCc-EEEEEEC--CeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcC
Q 044504 24 LIITPLGAGNEVGRS-CVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT 100 (525)
Q Consensus 24 m~i~~LG~~~evg~s-~~ll~~~--~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~ 100 (525)
|+++.++... .| ||+|..+ +..++||+|.. ..+ +..+.. ...+|++||+||.|.||+||+..|.++++
T Consensus 1 ~~i~~~~~~~---dNy~Yli~d~~~~~~vlIDp~~~---~~i--l~~l~~-~g~~l~~Il~TH~H~DH~gG~~~l~~~~~ 71 (258)
T PLN02469 1 MKIIPVPCLE---DNYAYLIIDESTKDAAVVDPVDP---EKV--LQAAHE-HGAKIKLVLTTHHHWDHAGGNEKIKKLVP 71 (258)
T ss_pred CeEEEecccc---ceEEEEEEeCCCCeEEEECCCCh---HHH--HHHHHH-cCCcccEEEecCCCCccccCHHHHHHHCC
Confidence 4566666654 46 9999765 47899999832 111 111111 12478999999999999999999987753
Q ss_pred CCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCC-EEEEEE-eCCCCcCceEEE
Q 044504 101 FKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCY-TAGHVLGAAMFM 178 (525)
Q Consensus 101 ~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g-i~v~~~-~~gH~~gs~~~~ 178 (525)
+++||++.... .. .....+..++.+.+++ ..++++ .+||++|+++|+
T Consensus 72 -~~~V~~~~~~~------------~~------------------~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~ 120 (258)
T PLN02469 72 -GIKVYGGSLDN------------VK------------------GCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYY 120 (258)
T ss_pred -CCEEEEechhc------------CC------------------CCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEE
Confidence 57899865320 00 0124577888999975 677664 589999999999
Q ss_pred EEEC--CEEEEEeecCCC
Q 044504 179 VDIA--GVRVLYTGDYSR 194 (525)
Q Consensus 179 i~~~--~~~ilytGD~~~ 194 (525)
+... +.+++||||+-+
T Consensus 121 ~~~~~~~~~~lFtGDtLf 138 (258)
T PLN02469 121 VTGKEGEDPAVFTGDTLF 138 (258)
T ss_pred eccCCCCCCEEEecCccc
Confidence 8642 346999999875
No 32
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=99.39 E-value=3.2e-13 Score=92.60 Aligned_cols=42 Identities=40% Similarity=0.703 Sum_probs=37.2
Q ss_pred eeeeeEEEEEeecccCCCHHHHHHHHHhcCCCeEEEecCCHh
Q 044504 393 TAPLNMQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESH 434 (525)
Q Consensus 393 ~i~~~~~v~~i~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~ 434 (525)
.++++|+|+.++||||||++||.+|++.++|+++||||||++
T Consensus 2 ~i~v~a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe~~ 43 (43)
T PF07521_consen 2 MIPVRARVEQIDFSGHADREELLEFIEQLNPRKVILVHGEPR 43 (43)
T ss_dssp EEE--SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSEHH
T ss_pred EEEeEEEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCCCC
Confidence 578999999999999999999999999999999999999974
No 33
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.39 E-value=1.1e-12 Score=127.33 Aligned_cols=118 Identities=19% Similarity=0.307 Sum_probs=85.5
Q ss_pred CcEEEEEECC-eEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHHHH
Q 044504 37 RSCVYMSYKG-KTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY 115 (525)
Q Consensus 37 ~s~~ll~~~~-~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~~ 115 (525)
..+|++..++ ..+|||+|... ..+..+... ..++++|++||.|.||+||+..|.+.+ +.+||++..+.
T Consensus 10 N~~yli~~~~~~~ilID~g~~~-----~i~~~l~~~-g~~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~~--- 78 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEAE-----PVLDALEAR-GLTLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEER--- 78 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCChH-----HHHHHHHHc-CCeeeEEEeCCCCccccCCHHHHHHHC--CCeEEeccccc---
Confidence 3567776654 79999999521 111111111 235899999999999999999998775 47899876530
Q ss_pred HHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEe-CCCCcCceEEEEEECCEEEEEeecCCC
Q 044504 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHVLGAAMFMVDIAGVRVLYTGDYSR 194 (525)
Q Consensus 116 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~-~gH~~gs~~~~i~~~~~~ilytGD~~~ 194 (525)
+. .....+..++.+.+++.+++++. +||++|+++|++. +.+++|+||+.+
T Consensus 79 ---------~~------------------~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~--~~~~lftGDtl~ 129 (248)
T TIGR03413 79 ---------IP------------------GITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLP--DSPALFCGDTLF 129 (248)
T ss_pred ---------CC------------------CCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEEC--CCCEEEEcCccc
Confidence 00 12356778899999998888864 7999999999885 467999999975
No 34
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.37 E-value=1.3e-12 Score=138.01 Aligned_cols=130 Identities=20% Similarity=0.246 Sum_probs=93.0
Q ss_pred CCcEEEEEECCeEEEEecCCCCCcCc-cccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHHH
Q 044504 36 GRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAI 114 (525)
Q Consensus 36 g~s~~ll~~~~~~iLiD~G~~~~~~~-~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~ 114 (525)
..|||||. +++.+|||+|....... +..+. ..+++.+|++|++||.|.||+|+++.|+++++ +.+||+++.+...
T Consensus 34 t~NsYLI~-~~~~vLIDtg~~~~~~~~l~~l~--~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p-~a~V~~s~~~~~~ 109 (479)
T PRK05452 34 SYNSYLIR-EEKNVLIDTVDHKFSREFVQNLR--NEIDLADIDYIVINHAEEDHAGALTELMAQIP-DTPIYCTANAIDS 109 (479)
T ss_pred EEEEEEEE-CCCEEEEeCCCcccHHHHHHHHH--hcCCHhhCCEEEeCCCCcchhchHHHHHHHCC-CCEEEECHHHHHH
Confidence 56999998 56889999995321111 11111 12345789999999999999999999987643 6899999988765
Q ss_pred HHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeC-CEEEEEEeC--CCCcCceEEEEEECCEEEEEeec
Q 044504 115 YKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVN-GIKFWCYTA--GHVLGAAMFMVDIAGVRVLYTGD 191 (525)
Q Consensus 115 ~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-gi~v~~~~~--gH~~gs~~~~i~~~~~~ilytGD 191 (525)
+..... .+ ...+..++.++.+.++ +.+++++.+ +|++|+++++++ +.+++||||
T Consensus 110 l~~~~~-----------~~----------~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~vLFsgD 166 (479)
T PRK05452 110 INGHHH-----------HP----------EWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDAVLFSND 166 (479)
T ss_pred HHHhhc-----------CC----------cCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCCEEEecc
Confidence 432100 00 0145778899999998 577777644 499999999885 567999999
Q ss_pred C
Q 044504 192 Y 192 (525)
Q Consensus 192 ~ 192 (525)
+
T Consensus 167 ~ 167 (479)
T PRK05452 167 A 167 (479)
T ss_pred c
Confidence 6
No 35
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.37 E-value=1.3e-11 Score=136.26 Aligned_cols=165 Identities=19% Similarity=0.305 Sum_probs=114.6
Q ss_pred CcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCc--Cccc-cCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhh
Q 044504 22 DQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY--SGMA-ALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEK 98 (525)
Q Consensus 22 ~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~--~~~~-~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~ 98 (525)
...+++++..|+ |.|++|+.+++.+|||||..... .+.. ..|++...... ||++++||.|.||+||++.+.++
T Consensus 438 ~~~~v~~lDVGq---Gdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~ 513 (662)
T TIGR00361 438 SSWQVDMLDVGQ---GLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKH 513 (662)
T ss_pred CCEEEEEEecCC---ceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHh
Confidence 368999999998 67999999999999999964211 1111 23555444455 99999999999999999999887
Q ss_pred cCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCC------Cc
Q 044504 99 TTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGH------VL 172 (525)
Q Consensus 99 ~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH------~~ 172 (525)
+. ..+++.+.... .. ......+..++.+++++++++++.+.. ..
T Consensus 514 ~~-v~~i~~~~~~~-------~~----------------------~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~ 563 (662)
T TIGR00361 514 HP-VKRLVIPKGFV-------EE----------------------GVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNN 563 (662)
T ss_pred CC-ccEEEeccchh-------hC----------------------CCceEecCCCCEEeECCEEEEEECCCCccCCCCCC
Confidence 53 23666543210 00 012345677888999999999986542 13
Q ss_pred CceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCC
Q 044504 173 GAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQ 222 (525)
Q Consensus 173 gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~ 222 (525)
.|+.+.++.++.+++||||.....+..+.. ..+..++|+|.. ..+|.+
T Consensus 564 ~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~-~~~~l~~dvLk~-~HHGS~ 611 (662)
T TIGR00361 564 HSCVLWVDDGGNSWLLTGDLEAEGEQEVMR-VFPNIKADVLQV-GHHGSK 611 (662)
T ss_pred CceEEEEEECCeeEEEecCCCHHHHHHHHh-cccCcCccEEEe-CCCCCC
Confidence 678999999999999999998765543322 112447889987 334433
No 36
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.36 E-value=4e-13 Score=140.85 Aligned_cols=198 Identities=20% Similarity=0.235 Sum_probs=115.5
Q ss_pred CCCCCCCcEEEEEecCCCcc-----CCcEEEEEECCe-EEEEecCCCCCcCccccCC-CCCCCCCCCccEEEcCCCchhH
Q 044504 16 PVSREGDQLIITPLGAGNEV-----GRSCVYMSYKGK-TILFDCGIHPAYSGMAALP-YFDEIDPSAIDVLLITHFHLDH 88 (525)
Q Consensus 16 ~~~~~~~~m~i~~LG~~~ev-----g~s~~ll~~~~~-~iLiD~G~~~~~~~~~~~~-~~~~~~~~~Id~IliTH~H~DH 88 (525)
+.+..++.++|.+||+|..+ .-++++++.+.. .||+|||-+.-..-.+..- .....-..++.+|+|||.|.||
T Consensus 435 P~~~e~~~~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADH 514 (746)
T KOG2121|consen 435 PNFAEKKDPEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADH 514 (746)
T ss_pred CCccccCCcEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccc
Confidence 33444578999999999965 348899998655 5999999652111011111 0001123678999999999999
Q ss_pred hcChHHHHhhcC-C-----CceEEecHHHHHHHHHHHHHHHhhhcccc--------CCCCCCHHHHHHHhcccEEecCCc
Q 044504 89 AASLPYFLEKTT-F-----KGRVFMTHATKAIYKLLLTDYVKVSKVSV--------EDMLFDEQDINRSMDKIEVLDFHQ 154 (525)
Q Consensus 89 ~gglp~l~~~~~-~-----~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~~~ 154 (525)
.-|++.++.+.. + .-+++...+. .+..++..+.+...... ...+|+....+.. ...+ ...
T Consensus 515 h~Gl~~vL~~r~k~~k~~~~~pl~vv~P~--ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~---~~~~-~~~ 588 (746)
T KOG2121|consen 515 HLGLISVLQARTKLLKGVENSPLLVVAPR--QLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSV---PERL-LSY 588 (746)
T ss_pred cccHHHHHHHHHHhccccccCceEEeChH--HHHHHHHHHhcCcccchhhhhhhcCchhhhhccCcccc---chhh-hhH
Confidence 999998765431 1 1234433321 22233333332211100 0011110000000 0000 001
Q ss_pred E-EEeCCEEEEEEeCCCCcCceEEEEEEC-CEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCC
Q 044504 155 T-VEVNGIKFWCYTAGHVLGAAMFMVDIA-GVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLH 224 (525)
Q Consensus 155 ~-~~~~gi~v~~~~~gH~~gs~~~~i~~~-~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~ 224 (525)
. -+++...|...++-|++.|++..|..+ +.+|+|+||++..++.... ..++|+||+|+|+.+..+
T Consensus 589 ~l~~~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~-----g~datlLIHEAT~ED~l~ 655 (746)
T KOG2121|consen 589 LLRELGLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKA-----GKDATLLIHEATLEDDLE 655 (746)
T ss_pred HHHhcCceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHhhh-----ccCCceEEeehhhchhHH
Confidence 1 123557777789999999999998865 4899999999986554322 247999999999987753
No 37
>PRK11539 ComEC family competence protein; Provisional
Probab=99.36 E-value=9.8e-12 Score=138.83 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=109.7
Q ss_pred CCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCc-C-c-cccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHh
Q 044504 21 GDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAY-S-G-MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 21 ~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~-~-~-~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
...+++++|..|+ |.|++++.+++.+|+|||..... . + ....|++..... ++|++++||.|.||+||++.+.+
T Consensus 498 ~~~~~v~~lDVGq---G~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~ 573 (755)
T PRK11539 498 EYEWRVDMLDVGH---GLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLH 573 (755)
T ss_pred CCcEEEEEEEccC---ceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHH
Confidence 4568999999998 57889999999999999964211 1 1 112355444444 59999999999999999999987
Q ss_pred hcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEe-CCCC-----
Q 044504 98 KTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYT-AGHV----- 171 (525)
Q Consensus 98 ~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~-~gH~----- 171 (525)
.++ ..++|.+.... ....+..++.++.+++++++.. .+|.
T Consensus 574 ~~~-~~~i~~~~~~~---------------------------------~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N 619 (755)
T PRK11539 574 AWP-MAWIRSPLNWA---------------------------------NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGN 619 (755)
T ss_pred hCC-cceeeccCccc---------------------------------CcccccCCCeEeECCEEEEEEecCcccCCCCC
Confidence 753 35676543100 0112345778888999998864 3443
Q ss_pred cCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEE
Q 044504 172 LGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICII 215 (525)
Q Consensus 172 ~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~ 215 (525)
.+|+.+.++.++.++++|||.....+..+........++|+|..
T Consensus 620 ~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~v 663 (755)
T PRK11539 620 NDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQV 663 (755)
T ss_pred CccEEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEe
Confidence 46899999999999999999987655433221101236888886
No 38
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.34 E-value=5.3e-12 Score=121.93 Aligned_cols=138 Identities=14% Similarity=0.157 Sum_probs=91.5
Q ss_pred CCcEEEEEecCCCccCCcEEEEEE----CCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHH
Q 044504 21 GDQLIITPLGAGNEVGRSCVYMSY----KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFL 96 (525)
Q Consensus 21 ~~~m~i~~LG~~~evg~s~~ll~~----~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~ 96 (525)
+++|-|.-+-..+ .+.+||+|.. ++..+|||+|.......+. .+... ..+|.+||+||.|.||+||+..|.
T Consensus 8 ~~~m~~~~~~~~~-~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~---~l~~~-g~~i~~Il~TH~H~DHigg~~~l~ 82 (251)
T PLN02962 8 SSKLLFRQLFEKE-SSTYTYLLADVSHPDKPALLIDPVDKTVDRDLS---LVKEL-GLKLIYAMNTHVHADHVTGTGLLK 82 (251)
T ss_pred CCceEEEEeecCC-ceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHH---HHHHC-CCeeEEEEcCCCCchhHHHHHHHH
Confidence 3446555552222 2579999875 3578999998421101111 11111 235789999999999999999997
Q ss_pred hhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE-eCCCCcCce
Q 044504 97 EKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY-TAGHVLGAA 175 (525)
Q Consensus 97 ~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~-~~gH~~gs~ 175 (525)
+++. ..++|+.... . + ..-..+..++.+.+++..++++ .+||++|++
T Consensus 83 ~~~~-~a~v~~~~~~---------------~-------~---------~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v 130 (251)
T PLN02962 83 TKLP-GVKSIISKAS---------------G-------S---------KADLFVEPGDKIYFGDLYLEVRATPGHTAGCV 130 (251)
T ss_pred HHCC-CCeEEecccc---------------C-------C---------CCCEEeCCCCEEEECCEEEEEEECCCCCcCcE
Confidence 7642 4688875321 0 0 0113467788999999888874 689999999
Q ss_pred EEEEEEC----CEEEEEeecCCCC
Q 044504 176 MFMVDIA----GVRVLYTGDYSRE 195 (525)
Q Consensus 176 ~~~i~~~----~~~ilytGD~~~~ 195 (525)
+|++..+ ..+++|+||+.+.
T Consensus 131 ~~~~~d~~~~~~~~~lftGD~Lf~ 154 (251)
T PLN02962 131 TYVTGEGPDQPQPRMAFTGDALLI 154 (251)
T ss_pred EEEeccCCCCCccceEEECCeecc
Confidence 9987531 3469999998754
No 39
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.33 E-value=8e-12 Score=124.56 Aligned_cols=133 Identities=20% Similarity=0.187 Sum_probs=94.6
Q ss_pred cEEEEEecCCCccCCcEEEEEEC--CeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcC
Q 044504 23 QLIITPLGAGNEVGRSCVYMSYK--GKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT 100 (525)
Q Consensus 23 ~m~i~~LG~~~evg~s~~ll~~~--~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~ 100 (525)
.|+|+.+-.-.. ..||+|..+ +..++||+|... ..++.+ .. ...+|++|++||.|.||+||+..|.+++
T Consensus 75 ~~~i~~ip~l~d--Ny~Yli~d~~t~~~~vVDP~~a~--~vl~~l---~~-~g~~L~~ILlTH~H~DH~GG~~~L~~~~- 145 (329)
T PLN02398 75 SLQIELVPCLKD--NYAYLLHDEDTGTVGVVDPSEAV--PVIDAL---SR-KNRNLTYILNTHHHYDHTGGNLELKARY- 145 (329)
T ss_pred CcEEEEEeeeCc--eEEEEEEECCCCEEEEEcCCCHH--HHHHHH---Hh-cCCCceEEEECCCCchhhCCHHHHHHhc-
Confidence 467777765442 359999754 468999998421 111111 11 2357899999999999999999998775
Q ss_pred CCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE-eCCCCcCceEEEE
Q 044504 101 FKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY-TAGHVLGAAMFMV 179 (525)
Q Consensus 101 ~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~-~~gH~~gs~~~~i 179 (525)
+.+||++..+.+... .....+..++++.+++.+++++ .+||++|+++|++
T Consensus 146 -ga~V~g~~~~~~~i~----------------------------~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~ 196 (329)
T PLN02398 146 -GAKVIGSAVDKDRIP----------------------------GIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYF 196 (329)
T ss_pred -CCEEEEehHHhhhcc----------------------------CCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEE
Confidence 579999875432110 1125677888999999888875 5799999999987
Q ss_pred EECCEEEEEeecCCCC
Q 044504 180 DIAGVRVLYTGDYSRE 195 (525)
Q Consensus 180 ~~~~~~ilytGD~~~~ 195 (525)
. +.+++|+||+-+.
T Consensus 197 ~--~~~vLFtGDtLf~ 210 (329)
T PLN02398 197 P--GSGAIFTGDTLFS 210 (329)
T ss_pred C--CCCEEEECCCcCC
Confidence 4 4469999999753
No 40
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.30 E-value=6e-12 Score=122.33 Aligned_cols=128 Identities=22% Similarity=0.307 Sum_probs=87.7
Q ss_pred EEEEEecCCCccCCcEEEEEE-CCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCC
Q 044504 24 LIITPLGAGNEVGRSCVYMSY-KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFK 102 (525)
Q Consensus 24 m~i~~LG~~~evg~s~~ll~~-~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~ 102 (525)
|+|+.+.+... ..+|++.. ++..+|||+|... .-+.. +... ..++++|++||.|.||+||+..|.++++ .
T Consensus 1 ~~i~~~~~~~d--Ny~~li~~~~~~~ilIDpg~~~--~vl~~---l~~~-g~~l~~IllTH~H~DHigG~~~l~~~~~-~ 71 (251)
T PRK10241 1 MNLNSIPAFDD--NYIWVLNDEAGRCLIVDPGEAE--PVLNA---IAEN-NWQPEAIFLTHHHHDHVGGVKELVEKFP-Q 71 (251)
T ss_pred CeeEEeeeecc--eEEEEEEcCCCcEEEECCCChH--HHHHH---HHHc-CCccCEEEeCCCCchhhccHHHHHHHCC-C
Confidence 45666665542 34467654 3578999999531 11111 1111 1356899999999999999999988753 5
Q ss_pred ceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE-eCCCCcCceEEEEEE
Q 044504 103 GRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY-TAGHVLGAAMFMVDI 181 (525)
Q Consensus 103 ~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~-~~gH~~gs~~~~i~~ 181 (525)
.+||++..+.. . .....+..++.+.+++.+++++ .+||++|+++|+.
T Consensus 72 ~~V~~~~~~~~------------~------------------~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~-- 119 (251)
T PRK10241 72 IVVYGPQETQD------------K------------------GTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS-- 119 (251)
T ss_pred CEEEecccccc------------c------------------CCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeec--
Confidence 78998653210 0 1224567788999988888876 5899999999964
Q ss_pred CCEEEEEeecCCC
Q 044504 182 AGVRVLYTGDYSR 194 (525)
Q Consensus 182 ~~~~ilytGD~~~ 194 (525)
..++||||+-+
T Consensus 120 --~~~lFtGDtlf 130 (251)
T PRK10241 120 --KPYLFCGDTLF 130 (251)
T ss_pred --CCcEEEcCeec
Confidence 24899999875
No 41
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.25 E-value=4.8e-11 Score=108.38 Aligned_cols=155 Identities=21% Similarity=0.274 Sum_probs=91.8
Q ss_pred EEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCce
Q 044504 25 IITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGR 104 (525)
Q Consensus 25 ~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~ 104 (525)
+|++|| .||++|+.++.+||+|++.. ..+. .....++|+|++||.|.||+.. +.+. +
T Consensus 1 ~It~lg------ha~~~ie~~g~~iliDP~~~-------~~~~--~~~~~~~D~IlisH~H~DH~~~-~~l~-~------ 57 (163)
T PF13483_consen 1 KITWLG------HASFLIETGGKRILIDPWFS-------SVGY--APPPPKADAILISHSHPDHFDP-ETLK-R------ 57 (163)
T ss_dssp EEEEEE------TTEEEEEETTEEEEES--TT-------T--T---TSS-B-SEEEESSSSTTT-CC-CCCC-C------
T ss_pred CEEEEE------eeEEEEEECCEEEEECCCCC-------ccCc--ccccCCCCEEEECCCccccCCh-hHhh-h------
Confidence 578884 78999999999999999842 0111 1123789999999999999976 1111 1
Q ss_pred EEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCC-------cCceEE
Q 044504 105 VFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHV-------LGAAMF 177 (525)
Q Consensus 105 Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~-------~gs~~~ 177 (525)
+ ..++..+..++.+++++++++.+++-|. ...++|
T Consensus 58 ~--------------------------------------~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~ 99 (163)
T PF13483_consen 58 L--------------------------------------DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGY 99 (163)
T ss_dssp H--------------------------------------HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEE
T ss_pred c--------------------------------------ccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEE
Confidence 0 0356778888999999999999877663 247899
Q ss_pred EEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHHHHHHHHHHHhcCCeEEEcc
Q 044504 178 MVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHSTISQGGRVLIPA 252 (525)
Q Consensus 178 ~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~l~~~i~~~~~~~g~vlip~ 252 (525)
+++.++.++++.||+....+.-.. .. ..++|++++-..- ... ...++..++++. -+-+++||+
T Consensus 100 ~i~~~g~~i~~~Gd~~~~~~~~~~-~~--~~~vDvl~~p~~g--~~~----~~~~~a~~~~~~---l~pk~viP~ 162 (163)
T PF13483_consen 100 LIEVGGVTIYHAGDTGFPPDDEQL-KQ--LGKVDVLFLPVGG--PFT----MGPEEAAELAER---LKPKLVIPM 162 (163)
T ss_dssp EEEETTEEEEE-TT--S---HHHH-HH--H-S-SEEEEE--T--TTS------HHHHHHHHHH---CT-SEEEEE
T ss_pred EEEeCCCEEEEECCCccCCCHHHH-hc--ccCCCEEEecCCC--Ccc----cCHHHHHHHHHH---cCCCEEEeC
Confidence 999999999999999864322111 11 2379999985422 111 112233334333 467788886
No 42
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.24 E-value=4.4e-11 Score=115.85 Aligned_cols=160 Identities=22% Similarity=0.350 Sum_probs=93.5
Q ss_pred cEEEEEecCCCccCCcEEEEEECC-eEEEEecCCCCCc-CccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcC
Q 044504 23 QLIITPLGAGNEVGRSCVYMSYKG-KTILFDCGIHPAY-SGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT 100 (525)
Q Consensus 23 ~m~i~~LG~~~evg~s~~ll~~~~-~~iLiD~G~~~~~-~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~ 100 (525)
.+.....|.......+++++..++ ..+|||||..... ..+ ...+..... +|++|++||.|.||+||+..+.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~liD~G~~~~~~~~~--~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~ 87 (252)
T COG0491 11 GITAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDADAEAL--LEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG 87 (252)
T ss_pred ccEEEEecCcccccccEEEEEcCCCceEEEeCCCCchHHHHH--HHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC
Confidence 445555553333345566666655 8999999975421 111 111111222 89999999999999999999877643
Q ss_pred CCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE-eCCCCcCceEEEE
Q 044504 101 FKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY-TAGHVLGAAMFMV 179 (525)
Q Consensus 101 ~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~-~~gH~~gs~~~~i 179 (525)
..+++.................... .....+. ..........++.+.+++..++++ .+||++|+.+|++
T Consensus 88 -~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~ 157 (252)
T COG0491 88 -AAPVIAPAEVPLLLREEILRKAGVT---AEAYAAP------GASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLL 157 (252)
T ss_pred -CceEEccchhhhhhhcccccccccc---cccCCCC------ccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEE
Confidence 3566444433332221110000000 0000000 112345556788888888555553 4699999999999
Q ss_pred EECCEEEEEeecCCCCCc
Q 044504 180 DIAGVRVLYTGDYSREED 197 (525)
Q Consensus 180 ~~~~~~ilytGD~~~~~~ 197 (525)
+..+ ++|+||......
T Consensus 158 ~~~~--~l~~gD~~~~~~ 173 (252)
T COG0491 158 EDGG--VLFTGDTLFAGD 173 (252)
T ss_pred CCcc--EEEecceeccCC
Confidence 7654 999999986543
No 43
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.18 E-value=1.2e-09 Score=106.91 Aligned_cols=166 Identities=22% Similarity=0.206 Sum_probs=107.0
Q ss_pred CCCcEEEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhc
Q 044504 20 EGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKT 99 (525)
Q Consensus 20 ~~~~m~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~ 99 (525)
+...|++++|| .+|++|+.++.+||+|+.............-........+|+|++||.|.||++.-.....+.
T Consensus 3 ~~~~m~itwlG------ha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~ 76 (258)
T COG2220 3 SAEDMKITWLG------HAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRT 76 (258)
T ss_pred CCcCceEEEec------ceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhc
Confidence 46789999995 789999999999999999864322111000011223467999999999999998654333222
Q ss_pred CCCceEEecHHHH-HHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCC-------
Q 044504 100 TFKGRVFMTHATK-AIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHV------- 171 (525)
Q Consensus 100 ~~~~~Iy~t~~t~-~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~------- 171 (525)
+ +.+++..+... .++. .+- + ....+..+++++.++++++++++.++-|.
T Consensus 77 ~-~~~~~~~p~~~~~~~~---~~g-----------------~--~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~ 133 (258)
T COG2220 77 N-KAPVVVVPLGAGDLLI---RDG-----------------V--EAERVHELGWGDVIELGDLEITAVPAYHVSARHLPG 133 (258)
T ss_pred C-CCcEEEeHHHHHHHHH---hcC-----------------C--CcceEEeecCCceEEecCcEEEEEEeecccccccCC
Confidence 2 34555555443 2211 100 0 00256778889999999988877654442
Q ss_pred ------cCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCC
Q 044504 172 ------LGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIEST 218 (525)
Q Consensus 172 ------~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Est 218 (525)
-+.++|.++.++.++++.||+.. ........ ...+|+++++..
T Consensus 134 ~~~~~~~~~~~~vi~~~g~~iyh~GDt~~--~~~~~~~~--~~~~DvallPig 182 (258)
T COG2220 134 RGIRPTGLWVGYVIETPGGRVYHAGDTGY--LFLIIEEL--DGPVDVALLPIG 182 (258)
T ss_pred CCccccCCceEEEEEeCCceEEeccCccH--HHHhhhhh--cCCccEEEeccC
Confidence 23678999999999999999997 11111111 224899998764
No 44
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.17 E-value=7.4e-11 Score=118.00 Aligned_cols=137 Identities=19% Similarity=0.254 Sum_probs=104.7
Q ss_pred ecCCCccCCcEEEEEECCeEEEEecCCCCCcCc-cccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEe
Q 044504 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSG-MAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFM 107 (525)
Q Consensus 29 LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~-~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~ 107 (525)
++....++-|+|||. +++.+|||++-..-+.. +..+ ...+++++||+|+++|..+||+|+++.+++..+ +++|++
T Consensus 28 ~~~~~GttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l--~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~ 103 (388)
T COG0426 28 YETPRGTTYNSYLIV-GDKTALIDTVGEKFFDEYLENL--SKYIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIIC 103 (388)
T ss_pred eccCCCceeeeEEEe-CCcEEEECCCCcchHHHHHHHH--HhhcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEe
Confidence 344445667999999 99999999985321110 1111 124678999999999999999999999998765 899999
Q ss_pred cHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeC--CCCcCceEEEEEECCEE
Q 044504 108 THATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTA--GHVLGAAMFMVDIAGVR 185 (525)
Q Consensus 108 t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~--gH~~gs~~~~i~~~~~~ 185 (525)
|.....+++....+. ..+..++.|+++++||.+++++++ -|.|++...+. ...+
T Consensus 104 s~~~~~~L~~~~~~~----------------------~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TYd--~~~k 159 (388)
T COG0426 104 SKLAARFLKGFYHDP----------------------EWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTYD--PEDK 159 (388)
T ss_pred eHHHHHHHHHhcCCc----------------------cceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEee--cCCc
Confidence 999888877653321 126788999999999999888765 69999877665 4567
Q ss_pred EEEeecCC
Q 044504 186 VLYTGDYS 193 (525)
Q Consensus 186 ilytGD~~ 193 (525)
|+||+|+.
T Consensus 160 ILFS~D~f 167 (388)
T COG0426 160 ILFSCDAF 167 (388)
T ss_pred EEEccccc
Confidence 99999976
No 45
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.11 E-value=2.5e-10 Score=112.39 Aligned_cols=210 Identities=14% Similarity=0.099 Sum_probs=107.2
Q ss_pred CcEEEEEecCCCccCCcEEEEEECC-----eEEEEecCCCCCcCccccCCCCC----CCCCCCccEEEcCCCchhHhcCh
Q 044504 22 DQLIITPLGAGNEVGRSCVYMSYKG-----KTILFDCGIHPAYSGMAALPYFD----EIDPSAIDVLLITHFHLDHAASL 92 (525)
Q Consensus 22 ~~m~i~~LG~~~evg~s~~ll~~~~-----~~iLiD~G~~~~~~~~~~~~~~~----~~~~~~Id~IliTH~H~DH~ggl 92 (525)
..|++++||.|..- ++..+..+. .++.+|||.....--.+..+.+. ......+|+||+||.|.||+.|+
T Consensus 2 ~~~~f~~lgsG~~g--g~p~~~~~~~~c~~~~~~v~~~~~~~~~lid~g~~~~~~~~~~~~~~idai~~TH~H~DHi~Gl 79 (269)
T COG1235 2 GGMRFTVLGSGSSG--GVPVIGCDCRACGGNRLRVDCGVGVKTLLIDAGPDLRDQGLRLGVSDLDAILLTHEHSDHIQGL 79 (269)
T ss_pred CceEEEEEEEcCCC--CceecCCCccccCCceEEEEEEecceeEEEecChhHHhhhhcccccccCeEEEecccHHhhcCh
Confidence 46899999988752 222222222 34444444321100001111111 12235899999999999999999
Q ss_pred HHHHhhcCCCceEEecHHHHHHHHHH-HHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCC--
Q 044504 93 PYFLEKTTFKGRVFMTHATKAIYKLL-LTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAG-- 169 (525)
Q Consensus 93 p~l~~~~~~~~~Iy~t~~t~~~~~~~-l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~g-- 169 (525)
+.|.+.+ ..+++....+....... +.+..... ...+....+...+.+..++++...
T Consensus 80 ~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~hd 138 (269)
T COG1235 80 DDLRRAY--TLPIYVNPGTLRASTSDRLLGGFPYL-------------------FRHPFPPFSLPAIGGLEVTPFPVPHD 138 (269)
T ss_pred HHHHHHh--cCCcccccceecccchhhhhccchhh-------------------hcCCCCccccccccceeeecCCCCCc
Confidence 9998865 44565555443322211 00000000 000111112222233333322222
Q ss_pred ----------------CCcCceEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCChhHHHHH
Q 044504 170 ----------------HVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKR 233 (525)
Q Consensus 170 ----------------H~~gs~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~~~~~~~ 233 (525)
|.....++.++...+.+.|++|+...++.+..... .....++++.++++....|.+.....+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~-~~~~~~~~~~~~~~~~~gh~~~h~~~~~ 217 (269)
T COG1235 139 AIEPVGFVIIRTGRKLHGGTDIGYGLEWRIGDVAYLTDTELFPSNHDVELL-DNGLYPLDIKDRILPDPGHLSNHLSAEE 217 (269)
T ss_pred cccCCCcccccCcccccccccceeeeeeeeccEEEccccccCcchhHHHHh-cCCccceeeeeccccccCCCCCchhHHH
Confidence 22344556655555789999999987766542221 1346788899999987766554444433
Q ss_pred HHHHHHHHHhcCCeEEEcccchhh
Q 044504 234 FTDVIHSTISQGGRVLIPAFALGR 257 (525)
Q Consensus 234 l~~~i~~~~~~~g~vlip~fa~gr 257 (525)
..+++... ...++++...+.-.
T Consensus 218 a~~~~~~~--~~~rivLtHls~~~ 239 (269)
T COG1235 218 ALELIEKL--KPKRLVLTHLSHKN 239 (269)
T ss_pred HHHHHHhC--CcceEEEEecCCCC
Confidence 33433332 23447777766443
No 46
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.10 E-value=2.1e-10 Score=109.04 Aligned_cols=127 Identities=23% Similarity=0.307 Sum_probs=89.4
Q ss_pred CCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCC--CCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHH
Q 044504 36 GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI--DPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 113 (525)
Q Consensus 36 g~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~--~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~ 113 (525)
+.++||+..++.++..|.|-....+. ..+..... ...++.+||.||.|.||+||+..|.+...++..+|......
T Consensus 12 ~Ny~YLl~~~~~~~~a~~vDP~~pe~--v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~r- 88 (265)
T KOG0813|consen 12 DNYMYLLGDGDKTIDADLVDPAEPEY--VIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADDR- 88 (265)
T ss_pred CceEEEEecccceeeeeeecCcchHH--HHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChhc-
Confidence 36889998877777777764211110 11111111 34578999999999999999999987755567777654100
Q ss_pred HHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE-eCCCCcCceEEEEE-ECCEEEEEeec
Q 044504 114 IYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY-TAGHVLGAAMFMVD-IAGVRVLYTGD 191 (525)
Q Consensus 114 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~-~~gH~~gs~~~~i~-~~~~~ilytGD 191 (525)
+. .-...++.++.+.++|.+|+++ .+||+.|+++|++. ..+.+.+||||
T Consensus 89 --------------------------~~---~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGD 139 (265)
T KOG0813|consen 89 --------------------------IP---GITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGD 139 (265)
T ss_pred --------------------------Cc---cccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCC
Confidence 00 1113377889999999999985 68999999999998 56678999999
Q ss_pred CCC
Q 044504 192 YSR 194 (525)
Q Consensus 192 ~~~ 194 (525)
+-+
T Consensus 140 tlf 142 (265)
T KOG0813|consen 140 TLF 142 (265)
T ss_pred cee
Confidence 864
No 47
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.98 E-value=2.5e-08 Score=92.42 Aligned_cols=230 Identities=20% Similarity=0.233 Sum_probs=124.7
Q ss_pred EEEEEecCCC-ccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCC------------CCCCccEEEcCCCchhHhc
Q 044504 24 LIITPLGAGN-EVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEI------------DPSAIDVLLITHFHLDHAA 90 (525)
Q Consensus 24 m~i~~LG~~~-evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~------------~~~~Id~IliTH~H~DH~g 90 (525)
|+|++++..+ .|-.-|.+|++.+-.||||+|..........-|....+ -.++.|.|.|||+|.||.-
T Consensus 1 MkV~Pla~eSLGVRSmAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHht 80 (304)
T COG2248 1 MKVIPLASESLGVRSMATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHT 80 (304)
T ss_pred CceeeccccccchhhhhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCC
Confidence 6788887665 34456889999999999999987443222212211000 1256789999999999985
Q ss_pred Ch-HHHHhh------cCCCc-eEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEE
Q 044504 91 SL-PYFLEK------TTFKG-RVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIK 162 (525)
Q Consensus 91 gl-p~l~~~------~~~~~-~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~ 162 (525)
-. +.+.+. .-|++ .+++-++|..+-...-....... +.+... .+-.....++++++++..
T Consensus 81 Pf~~~~y~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl-----------~~~~~~-~~~ie~ADgk~f~fG~t~ 148 (304)
T COG2248 81 PFFDGIYEASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFL-----------ESLKDI-AREIEYADGKTFEFGGTV 148 (304)
T ss_pred ccccchhhhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHH-----------HHhhhh-cceeEecCCceEEeCCEE
Confidence 41 111111 01222 34555665554332211111100 011111 122345668899999999
Q ss_pred EEEE-eCCCCc-Cc-----eEEEEEECCEEEEEeecCC-CCCcccCccCCCCCCCCcEEEEcC--CCCCCCCCChhHHHH
Q 044504 163 FWCY-TAGHVL-GA-----AMFMVDIAGVRVLYTGDYS-REEDRHLRAAELPQFSPDICIIES--TYGVQLHQPRNIREK 232 (525)
Q Consensus 163 v~~~-~~gH~~-gs-----~~~~i~~~~~~ilytGD~~-~~~~~~~~~~~~~~~~~D~LI~Es--ty~~~~~~~~~~~~~ 232 (525)
|.+- +.-|.. |+ .++.+..++.+++|+.|.. ...+..+... ...+||++|++. ||--...-..... +
T Consensus 149 IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i--~e~~P~v~ii~GPpty~lg~r~~~~~~-E 225 (304)
T COG2248 149 IEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFI--LEKRPDVLIIGGPPTYLLGYRVGPKSL-E 225 (304)
T ss_pred EEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHH--HhcCCCEEEecCCchhHhhhhcChHHH-H
Confidence 8885 456775 33 4667777889999999987 3333332221 145899999976 4321111111222 2
Q ss_pred HHHHHHHHHHhcC-CeEEEcccc--hhhHHHHHHHHHHH
Q 044504 233 RFTDVIHSTISQG-GRVLIPAFA--LGRAQELLLILDEY 268 (525)
Q Consensus 233 ~l~~~i~~~~~~~-g~vlip~fa--~gr~qell~~l~~~ 268 (525)
.-.+.+++++++. ++++|-... -.+-.|.+.-+.+.
T Consensus 226 ~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~ 264 (304)
T COG2248 226 KGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFER 264 (304)
T ss_pred HHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhh
Confidence 2233344444443 566665554 23344555444443
No 48
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=98.95 E-value=5.7e-10 Score=104.82 Aligned_cols=75 Identities=25% Similarity=0.383 Sum_probs=57.6
Q ss_pred CcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHH
Q 044504 37 RSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKA 113 (525)
Q Consensus 37 ~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~ 113 (525)
+=++||+.++++||+|+|..+.. +..-....++++.+||+|+|||.|.||+|||+++.+....+.+||+++....
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~--ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~af~ 96 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDV--LLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDAFK 96 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHH--HHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHHHh
Confidence 46788999999999999964321 1100112367889999999999999999999999887655779999886543
No 49
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.77 E-value=1.5e-07 Score=93.87 Aligned_cols=192 Identities=20% Similarity=0.179 Sum_probs=112.2
Q ss_pred EEEEecCCC---ccCCcEEEEEEC--CeEEEEecCCCCCc-C------cc-----ccCCCC--CC--------CCCCCcc
Q 044504 25 IITPLGAGN---EVGRSCVYMSYK--GKTILFDCGIHPAY-S------GM-----AALPYF--DE--------IDPSAID 77 (525)
Q Consensus 25 ~i~~LG~~~---evg~s~~ll~~~--~~~iLiD~G~~~~~-~------~~-----~~~~~~--~~--------~~~~~Id 77 (525)
.+.+||.++ |-..+++|++.. +..+-+|+|..... . .. ...|.. .. +-...|.
T Consensus 2 ~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~ 81 (335)
T PF02112_consen 2 QVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIK 81 (335)
T ss_pred eEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhh
Confidence 567887766 345789999874 66788999975221 0 00 011110 00 0114789
Q ss_pred EEEcCCCchhHhcChHHHHhhcC----CCceEEecHHHHHHHHHH-HHHHHhhhccccCCCCCCHHHHHH-HhcccEEec
Q 044504 78 VLLITHFHLDHAASLPYFLEKTT----FKGRVFMTHATKAIYKLL-LTDYVKVSKVSVEDMLFDEQDINR-SMDKIEVLD 151 (525)
Q Consensus 78 ~IliTH~H~DH~gglp~l~~~~~----~~~~Iy~t~~t~~~~~~~-l~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 151 (525)
+.||||+|+||+.||-.-..... -+.+||+.+.|.+-++.. +.+. .|..+-+...... ...+...+.
T Consensus 82 ~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~-------iWPNl~~~~~~~~~~~~~~~~l~ 154 (335)
T PF02112_consen 82 GYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDI-------IWPNLSDEGEGDYLYKYRYFDLS 154 (335)
T ss_pred eEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCc-------cCCCCCCcCcccceeeeeeeecc
Confidence 99999999999999853222110 245799999998877642 2221 1222211111000 001222333
Q ss_pred CCcEEEe-------------CCEEEEEEeCCCCcC------ceEEEEEECC--EEEEEeecCCCCCcccCc---------
Q 044504 152 FHQTVEV-------------NGIKFWCYTAGHVLG------AAMFMVDIAG--VRVLYTGDYSREEDRHLR--------- 201 (525)
Q Consensus 152 ~~~~~~~-------------~gi~v~~~~~gH~~g------s~~~~i~~~~--~~ilytGD~~~~~~~~~~--------- 201 (525)
.++...+ .+..+++++..|... |.+|+|+... ..++|.||+..+.-....
T Consensus 155 ~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ 234 (335)
T PF02112_consen 155 PGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYA 234 (335)
T ss_pred ccceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHH
Confidence 3332222 135677789889753 7999998764 899999999965321110
Q ss_pred cCCCCCCCCcEEEEcCCCCCCC
Q 044504 202 AAELPQFSPDICIIESTYGVQL 223 (525)
Q Consensus 202 ~~~~~~~~~D~LI~Esty~~~~ 223 (525)
...++..+...+++||.|.+..
T Consensus 235 ap~I~~~~LkaI~IEcS~~~~~ 256 (335)
T PF02112_consen 235 APKIASGKLKAIFIECSYPNSQ 256 (335)
T ss_pred HhhccccccCEEEEEeCCCCCC
Confidence 1123356788999999998764
No 50
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=97.90 E-value=1.9e-05 Score=69.40 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=74.4
Q ss_pred cEEEEEE--CCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHHHH
Q 044504 38 SCVYMSY--KGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY 115 (525)
Q Consensus 38 s~~ll~~--~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~~ 115 (525)
-.|++-. ++..++||+-........+. +..+. -++-+-+-||.|.||+-|-.+|....+ ..+.++
T Consensus 22 ytYll~d~~~~~AviIDPV~et~~RD~ql---ikdLg-l~LiYa~NTH~HADHiTGtg~Lkt~~p---------g~kSVi 88 (237)
T KOG0814|consen 22 YTYLLGDHKTGKAVIIDPVLETVSRDAQL---IKDLG-LDLIYALNTHVHADHITGTGLLKTLLP---------GCKSVI 88 (237)
T ss_pred EEEEeeeCCCCceEEecchhhcccchHHH---HHhcC-ceeeeeecceeecccccccchHHHhcc---------cHHHHh
Confidence 3455544 47789999876432211111 11222 245678999999999999888754421 111111
Q ss_pred HHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEE-eCCCCcCceEEEEEECCEEEEEeecCC
Q 044504 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCY-TAGHVLGAAMFMVDIAGVRVLYTGDYS 193 (525)
Q Consensus 116 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~-~~gH~~gs~~~~i~~~~~~ilytGD~~ 193 (525)
.. .++.. .-.-++.|+.++++++.+++. .+||+.|++.|.+. +.+.+||||..
T Consensus 89 s~-------~SGak----------------AD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~--d~~~aFTGDal 142 (237)
T KOG0814|consen 89 SS-------ASGAK----------------ADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEH--DLRMAFTGDAL 142 (237)
T ss_pred hh-------ccccc----------------cccccCCCCEEEEccEEEEEecCCCCCCceEEEEec--Ccceeeeccee
Confidence 11 11111 113467899999999988875 68999999988874 46699999975
No 51
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=97.54 E-value=0.00036 Score=58.70 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=57.3
Q ss_pred CCCeEEEeCCCCCCCChHHHHHHHHcCCCCCcEEe--cccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEeecccCC
Q 044504 332 VGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI--PGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHA 409 (525)
Q Consensus 332 ~~p~viia~~gml~~g~~~~~~~~~~~~~~n~ii~--~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i~~S~Ha 409 (525)
..-.|-+++-+.+.......+++....+....|.| |||........... +..... ...-+..++.++||.|+
T Consensus 12 ~~t~iHvv~~~~~~~~~l~~~~~~~~~~~~~vi~i~PTgW~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~VPYSeHS 85 (110)
T PF07522_consen 12 SETRIHVVPMGQLSKETLEKYLKSLKPRFDPVIGIRPTGWSFSNKKKKSSV-SISPSL-----QSRGNVRIYRVPYSEHS 85 (110)
T ss_pred CCCeEEEEECCcCCHHHHHHHHHhhcccCCCeEEEEeCccccccCCCcccc-cccccc-----ccCCCceEEEEecccCC
Confidence 45578888666666445555666555556666555 67543221111110 000000 01123567889999999
Q ss_pred CHHHHHHHHHhcCCCeEEEec
Q 044504 410 DYAQTSTFLKELMPPNIILVH 430 (525)
Q Consensus 410 d~~~l~~~i~~~~P~~vi~vH 430 (525)
++.||.+|++.++|++|||+-
T Consensus 86 Sf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 86 SFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred CHHHHHHHHHhcCCcEEEccc
Confidence 999999999999999999864
No 52
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=97.33 E-value=0.00063 Score=64.33 Aligned_cols=110 Identities=19% Similarity=0.236 Sum_probs=70.6
Q ss_pred CCccEEEcCCCchhHhcChHH----HHhhcCCCceEEecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEE
Q 044504 74 SAIDVLLITHFHLDHAASLPY----FLEKTTFKGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEV 149 (525)
Q Consensus 74 ~~Id~IliTH~H~DH~gglp~----l~~~~~~~~~Iy~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
..|..-+|||+|+||+.|+-. +.++ -+..||+...|.+.++...-+.+- |..+-. .....-++..
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q--kkkTI~gl~~tIDvL~khvFN~lv------WP~lt~---~gs~~~~~qv 179 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ--KKKTIYGLADTIDVLRKHVFNWLV------WPNLTD---SGSGTYRMQV 179 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc--CCceEEechhHHHHHHHHhhcccc------cCCccc---ccCceEEEEE
Confidence 578999999999999998742 2222 134799999998887654322211 111110 0001124566
Q ss_pred ecCCcEEEe--CCEEEEEEeCCCCc--C----ceEEEEEEC--CEEEEEeecCCC
Q 044504 150 LDFHQTVEV--NGIKFWCYTAGHVL--G----AAMFMVDIA--GVRVLYTGDYSR 194 (525)
Q Consensus 150 i~~~~~~~~--~gi~v~~~~~gH~~--g----s~~~~i~~~--~~~ilytGD~~~ 194 (525)
+.+.+...+ -.+++.+++..|.. | |.+|++..+ +.-++|.||...
T Consensus 180 v~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvep 234 (356)
T COG5212 180 VRPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEP 234 (356)
T ss_pred eChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCc
Confidence 666665544 45677788888864 3 478888876 678999999874
No 53
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.33 E-value=3.1e-05 Score=78.38 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=48.9
Q ss_pred CcEEEEEECCeEEEEecCCCCCcCccccCC-CCCCCCCCCccEEEcCCCchhHhcChHHHHhhcC---CCceEEecHHH
Q 044504 37 RSCVYMSYKGKTILFDCGIHPAYSGMAALP-YFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTT---FKGRVFMTHAT 111 (525)
Q Consensus 37 ~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~-~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~---~~~~Iy~t~~t 111 (525)
.|..+|+.+...|+||+=..+... ..++. +........|.+|+.||+|.||+||+.-+..... -+.+|.++..-
T Consensus 126 sNITfveGdtg~IViDpL~t~~tA-~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GF 203 (655)
T COG2015 126 SNITFVEGDTGWIVIDPLVTPETA-KAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGF 203 (655)
T ss_pred cceEEEcCCcceEEEcccCCcHHH-HHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhH
Confidence 488899999999999987644311 01111 1112234678999999999999999877654321 15677777653
No 54
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.29 E-value=0.00021 Score=63.73 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred EEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEE
Q 044504 27 TPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVF 106 (525)
Q Consensus 27 ~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy 106 (525)
.++-.....+-||++...++.+||||+-.-.. ... ..+ .....+++|+||| .||+-....+.+.+ .++||
T Consensus 13 s~fn~~~n~dfng~~~~~p~GnilIDP~~ls~-~~~---~~l--~a~ggv~~IvLTn--~dHvR~A~~ya~~~--~a~i~ 82 (199)
T PF14597_consen 13 SWFNEARNLDFNGHAWRRPEGNILIDPPPLSA-HDW---KHL--DALGGVAWIVLTN--RDHVRAAEDYAEQT--GAKIY 82 (199)
T ss_dssp EEEETTTTEEEEEEEE--TT--EEES-----H-HHH---HHH--HHTT--SEEE-SS--GGG-TTHHHHHHHS----EEE
T ss_pred hhcChhhccCceeEEEEcCCCCEEecCccccH-HHH---HHH--HhcCCceEEEEeC--ChhHhHHHHHHHHh--CCeee
Confidence 34444555667899999999999999863110 000 111 1235689999998 56999988887774 67999
Q ss_pred ecHHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCCEEEEEEeCCCCcCceEEEEEECCEEE
Q 044504 107 MTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRV 186 (525)
Q Consensus 107 ~t~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~v~~~~~gH~~gs~~~~i~~~~~~i 186 (525)
.+...++... + ..-..+..++++ ++|+++...+-.|++|...++++. ++
T Consensus 83 ~p~~d~~~~p------------------~---------~~D~~l~dge~i-~~g~~vi~l~G~ktpGE~ALlled---~v 131 (199)
T PF14597_consen 83 GPAADAAQFP------------------L---------ACDRWLADGEEI-VPGLWVIHLPGSKTPGELALLLED---RV 131 (199)
T ss_dssp EEGGGCCC-S------------------S-----------SEEE-TT-BS-STTEEEEEE-SSSSTTEEEEEETT---TE
T ss_pred ccHHHHhhCC------------------C---------CCccccccCCCc-cCceEEEEcCCCCCCceeEEEecc---ce
Confidence 9887653211 1 122456666633 588988776666999999999853 59
Q ss_pred EEeecCC
Q 044504 187 LYTGDYS 193 (525)
Q Consensus 187 lytGD~~ 193 (525)
+++||..
T Consensus 132 Li~GDl~ 138 (199)
T PF14597_consen 132 LITGDLL 138 (199)
T ss_dssp EEESSSE
T ss_pred EEeccee
Confidence 9999965
No 55
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.001 Score=63.94 Aligned_cols=118 Identities=19% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEecHHHHHHH
Q 044504 36 GRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIY 115 (525)
Q Consensus 36 g~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t~~t~~~~ 115 (525)
-++..++..++..+++|.|.+ .....++.+++|+.+.+||.|.+|+|.+..+..+ +++ +
T Consensus 94 ~~~~tl~~d~~~v~v~~~gls--------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~s-----p~l--------~ 152 (302)
T KOG4736|consen 94 QGQITLVVDGGDVVVVDTGLS--------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQS-----PIL--------Y 152 (302)
T ss_pred hcccceeecCCceEEEecCCc--------hhhhcCcChhhcceeEEeccCcccccccccccCC-----HHH--------h
Confidence 346677778889999999974 1112256789999999999999999998765321 111 0
Q ss_pred HHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEeCC-EEEEEEeCCCCcCceEEEEEE--CCEEEEEeecC
Q 044504 116 KLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNG-IKFWCYTAGHVLGAAMFMVDI--AGVRVLYTGDY 192 (525)
Q Consensus 116 ~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g-i~v~~~~~gH~~gs~~~~i~~--~~~~ilytGD~ 192 (525)
..+ ...+ ..+.+ ..++.+..+++++ +.+. -.+||+.-+....+.. ..++++++||+
T Consensus 153 ~s~-----e~~g-----r~~~p----------t~l~e~~~~~l~~~~~V~-~TpGht~~~isvlv~n~~~~GTv~itGDL 211 (302)
T KOG4736|consen 153 HSM-----EYIG-----RHVTP----------TELDERPYLKLSPNVEVW-KTPGHTQHDISVLVHNVDLYGTVAITGDL 211 (302)
T ss_pred hhh-----hhcC-----CccCh----------hhhccCCccccCCceeEe-eCCCCCCcceEEEEEeecccceEEEEeec
Confidence 100 0000 00111 1233344455543 3333 3799999888877774 34799999998
Q ss_pred CCC
Q 044504 193 SRE 195 (525)
Q Consensus 193 ~~~ 195 (525)
-..
T Consensus 212 f~~ 214 (302)
T KOG4736|consen 212 FPR 214 (302)
T ss_pred ccC
Confidence 643
No 56
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=96.79 E-value=0.0015 Score=48.35 Aligned_cols=50 Identities=16% Similarity=0.367 Sum_probs=39.8
Q ss_pred CcEEEEEECCeEEEE-ecCCCCCcCccccCCCCCCCCCCCccEEEcCCCc-hhHhcC
Q 044504 37 RSCVYMSYKGKTILF-DCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFH-LDHAAS 91 (525)
Q Consensus 37 ~s~~ll~~~~~~iLi-D~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H-~DH~gg 91 (525)
+.|++|..+.++.|| +||. +.+..-....+...+++.||+|+.+ .|++||
T Consensus 12 ~p~l~l~~d~~rYlFGn~gE-----GtQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 12 GPSLLLFFDSRRYLFGNCGE-----GTQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CCEEEEEeCCceEEeccCCc-----HHHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 389999999999999 9994 3333222235667899999999999 999987
No 57
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=96.03 E-value=0.045 Score=51.55 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=87.0
Q ss_pred CCcEEEEEECCeEEEEecCCCCC-------cCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHHhhcCCCceEEec
Q 044504 36 GRSCVYMSYKGKTILFDCGIHPA-------YSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMT 108 (525)
Q Consensus 36 g~s~~ll~~~~~~iLiD~G~~~~-------~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~~~~~~~~~Iy~t 108 (525)
|.+|.++..+|-++|-|.=+... .+.+...|. ...++.++|.+++||.|.||.-.-.. ..-.+...+++.-
T Consensus 87 g~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~-~~~~~p~~d~~~vsh~h~dhld~~~~-~~~~~~~~~~wfv 164 (343)
T KOG3798|consen 87 GHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPM-KLEDLPDLDFAVVSHDHYDHLDADAV-KKITDRNPQIWFV 164 (343)
T ss_pred cceeEEEeccCcEEecchhhccchhhcccCcccccCCch-hhccCCCCceeccccccccccchHHH-HhhhccCccceee
Confidence 67999999999999988765421 111122222 22367889999999999999875433 2222223333222
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCHHHHHHHhcccEEecCCcEEEe--CC--EEEEEEeCCCCcCc----------
Q 044504 109 HATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEV--NG--IKFWCYTAGHVLGA---------- 174 (525)
Q Consensus 109 ~~t~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~g--i~v~~~~~gH~~gs---------- 174 (525)
+.-.. ..+.. ++ + .....+..+++.++ ++ ++|.+.++-|.-+-
T Consensus 165 p~g~k--~~m~~-----~g---------------c-~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW 221 (343)
T KOG3798|consen 165 PLGMK--KWMEG-----DG---------------S-STVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLW 221 (343)
T ss_pred hhhhh--heecC-----CC---------------C-CceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCccee
Confidence 21110 11110 00 0 12233334444333 33 56666777775321
Q ss_pred eEEEEEECCEEEEEeecCCCCCcccCccCCCCCCCCcEEEEcC-CCCCC
Q 044504 175 AMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIES-TYGVQ 222 (525)
Q Consensus 175 ~~~~i~~~~~~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Es-ty~~~ 222 (525)
++|.+-..+.+++|.||+++.++......+- ...+|+..+-+ .|..+
T Consensus 222 ~sw~v~g~~nrfffaGDTGyc~~~F~~Iger-fGpfdLAaiPiGaYePr 269 (343)
T KOG3798|consen 222 SSWAVIGENNRFFFAGDTGYCDGEFKKIGER-FGPFDLAAIPIGAYEPR 269 (343)
T ss_pred eeeEEecCCceEEecCCCCcccHHHHHHHHh-cCCcceeeccccccCch
Confidence 3566666667999999999987544332221 22466655544 45554
No 58
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=95.52 E-value=0.077 Score=55.32 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=65.0
Q ss_pred CCcEEEEEecCCCccCCcEE-EEEECCeEEEEecCCCCCcC---cc-ccCCCCCC--CCCCCccEEEcCCCchhHhcChH
Q 044504 21 GDQLIITPLGAGNEVGRSCV-YMSYKGKTILFDCGIHPAYS---GM-AALPYFDE--IDPSAIDVLLITHFHLDHAASLP 93 (525)
Q Consensus 21 ~~~m~i~~LG~~~evg~s~~-ll~~~~~~iLiD~G~~~~~~---~~-~~~~~~~~--~~~~~Id~IliTH~H~DH~gglp 93 (525)
-+.+++.++++|. |+++|. ++++.+ ..++++|...... .. ...|.... +-....-++.++|.|.||.|.++
T Consensus 148 v~gIkf~p~~aGh-VlgacMf~veiag-v~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt 225 (668)
T KOG1137|consen 148 VNGIKFWPYHAGH-VLGACMFMVEIAG-VRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLT 225 (668)
T ss_pred cCCeEEEeeccch-hhhheeeeeeece-EEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhh
Confidence 3468999999555 555555 566654 5678999643211 11 11222111 11245678999999999999999
Q ss_pred HHHhhcCCC-----ceEEecHHHHHHHHHHHHH
Q 044504 94 YFLEKTTFK-----GRVFMTHATKAIYKLLLTD 121 (525)
Q Consensus 94 ~l~~~~~~~-----~~Iy~t~~t~~~~~~~l~d 121 (525)
++....-.+ .|||+...+.+++..+.+.
T Consensus 226 ~vIh~~v~rGGR~L~PvFAlgrAqELllildey 258 (668)
T KOG1137|consen 226 WVIHSTVPRGGRVLIPVFALGRAQELLLILDEY 258 (668)
T ss_pred hhHHhhccCCCceEeeeeecchHHHHHHHHHHH
Confidence 988765444 5899999999988776543
No 59
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=89.76 E-value=0.17 Score=54.30 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred EEEEecCCCccCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCC-CCCCCccEEEcCCCchhHhcChHHHHh
Q 044504 25 IITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDE-IDPSAIDVLLITHFHLDHAASLPYFLE 97 (525)
Q Consensus 25 ~i~~LG~~~evg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~-~~~~~Id~IliTH~H~DH~gglp~l~~ 97 (525)
=++++|||. +.+.|.-++|.+||+|.|.... -+++.- -...+||+|||||.-.|..+|+..|+.
T Consensus 39 CcYIfpGg~---gdaALFavnGf~iLv~GgserK------S~fwklVrHldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 39 CCYIFPGGR---GDAALFAVNGFNILVNGGSERK------SCFWKLVRHLDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred eEEECCCCC---CcceeEeecceEEeecCCcccc------cchHHHHHHHhhhhhhhhcccccCccccchHHHH
Confidence 366777765 4567788899999999986321 111111 135789999999999999999887765
No 60
>PRK00685 metal-dependent hydrolase; Provisional
Probab=87.89 E-value=1.1 Score=42.44 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=43.8
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCH-----hHHHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGES-----HEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~-----~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
+.|.+.+|..++++.++|+++||+|-.. .....|++.+++ ++ .++.+|+.|+++++
T Consensus 168 ~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~G~~~~~ 228 (228)
T PRK00685 168 NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG-LG---TKVVILKPGESIEL 228 (228)
T ss_pred ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh-cC---CcEEECCCCCEeeC
Confidence 4589999999999999999999999642 234566666665 33 47899999999864
No 61
>PRK00055 ribonuclease Z; Reviewed
Probab=86.69 E-value=1.6 Score=42.46 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=47.3
Q ss_pred cccCCCHHHHHHHHHhcCCCeEEEecCCHhH---HHHHHHHHHHHhccCCceEeeCCCCCEEEEeeC
Q 044504 405 FSAHADYAQTSTFLKELMPPNIILVHGESHE---MGRLKTKLMTELADCNTKIITPKNCQSVEMYFN 468 (525)
Q Consensus 405 ~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~---~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~ 468 (525)
.++|.+.++..++.+.++|++++++|=.++. ...+.+.+++.++ ++.+++.|.+++|.++
T Consensus 207 ~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~~~~~~~~~~~~~~~----~v~~a~Dg~~i~l~~~ 269 (270)
T PRK00055 207 EYGHSTARQAAEIAKEAGVKRLILTHFSPRYTGDPEELLKEAREIFP----NTELAEDLMRVEVPFR 269 (270)
T ss_pred hcCCCCHHHHHHHHHHcCCCEEEEEeeccccCCCHHHHHHHHHHHcC----CcEEccCCcEEEecCC
Confidence 4789999999999999999999999976543 2345555555442 6899999999999654
No 62
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=78.48 E-value=20 Score=35.46 Aligned_cols=82 Identities=17% Similarity=0.347 Sum_probs=50.5
Q ss_pred EEeCCCCCCCChHHHHHHHHcCCCCCcEEecccCCCCChhHHhhcCCceeEeecCeeeeeeEEEEEe--ecccCCCHHHH
Q 044504 337 VMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYI--SFSAHADYAQT 414 (525)
Q Consensus 337 iia~~gml~~g~~~~~~~~~~~~~~n~ii~~gy~~~gt~~~~l~~~~~~~~~~~g~~i~~~~~v~~i--~~S~Had~~~l 414 (525)
+|+++|. .|+--.+...+ .|.+.|+.. ..|+.+.+-.+-.+ ..| ++|+.+ .+-.|+.-+++
T Consensus 72 ~isgsGh--~g~E~al~N~l--ePgd~vLv~---~~G~wg~ra~D~~~----r~g------a~V~~v~~~~G~~~~le~i 134 (385)
T KOG2862|consen 72 VISGSGH--SGWEAALVNLL--EPGDNVLVV---STGTWGQRAADCAR----RYG------AEVDVVEADIGQAVPLEEI 134 (385)
T ss_pred EEecCCc--chHHHHHHhhc--CCCCeEEEE---EechHHHHHHHHHH----hhC------ceeeEEecCcccCccHHHH
Confidence 5566654 34333333322 355555543 23555544433221 123 344444 78899999999
Q ss_pred HHHHHhcCCCeEEEecCCHhH
Q 044504 415 STFLKELMPPNIILVHGESHE 435 (525)
Q Consensus 415 ~~~i~~~~P~~vi~vHGe~~~ 435 (525)
.+=+..-+|+-|+++|||...
T Consensus 135 ~~~lsqh~p~~vfv~hgdsST 155 (385)
T KOG2862|consen 135 TEKLSQHKPKAVFVTHGDSST 155 (385)
T ss_pred HHHHHhcCCceEEEEecCccc
Confidence 999999999999999999754
No 63
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=69.79 E-value=9 Score=37.99 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.9
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCHh--HHHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGESH--EMGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~~--~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
.+|.+.+|..++.+..++++++++|=..+ ....+.+.+++.++ ++.+++.|.++++
T Consensus 242 ~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~~~~~~~~~~~~~----~~~~a~dg~~~~~ 299 (299)
T TIGR02651 242 YGHSTAAQAAEIAKEANVKRLILTHISPRYSDEEELLEEAKKIFP----NTYIAEDFMEIEI 299 (299)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEecccccCChHHHHHHHHHhCC----CcEEccCccEeeC
Confidence 68999999999999999999999996543 23344444444442 6888899888764
No 64
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=66.93 E-value=39 Score=28.47 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=44.1
Q ss_pred eecccCCCHHHHHHHHHhcCCCeE-------EEecCCHhHHHHHHHHHHHHhccCCceEeeCCCC
Q 044504 403 ISFSAHADYAQTSTFLKELMPPNI-------ILVHGESHEMGRLKTKLMTELADCNTKIITPKNC 460 (525)
Q Consensus 403 i~~S~Had~~~l~~~i~~~~P~~v-------i~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g 460 (525)
+.=|+-.+..+|.+++..++|.-. ..+||+.+....+++.+++..+. +||+-..|
T Consensus 11 lapsa~vsp~elv~~l~~~~~PvtiKeTCfGaii~G~Ed~v~klveriR~~d~~---~IF~KdRG 72 (142)
T COG4029 11 LAPSAGVSPKELVQKLLELSPPVTIKETCFGAIIDGPEDEVRKLVERIRELDGN---AIFSKDRG 72 (142)
T ss_pred EcCccCcChHHHHHHHHhcCCCeEeeeeeeeeeecCcHHHHHHHHHHHHHhccC---ceeecccC
Confidence 455788899999999999988744 37999999999999999986543 67765544
No 65
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=65.73 E-value=9.1 Score=36.92 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=39.3
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
-+|.+.++..++++..+|++++++|=... +..+.... +.+. .++.+++.|.++++
T Consensus 196 ~~H~~~~~a~~~a~~~~~k~lvltH~~~~-~~~~~~~~-~~~~---~~~~~a~DG~~i~~ 250 (250)
T PRK11244 196 RNHNDLTTALAIIEVLRPPRVILTHISHQ-LDAWLMEN-AALP---SGVEVAYDGMEIGL 250 (250)
T ss_pred CCCCCHHHHHHHHHhcCCceEEEEcccCC-cchhhhhh-hhcC---CceEEecCccEeeC
Confidence 47999999999999999999999997543 22222222 1121 25888999988764
No 66
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=63.21 E-value=15 Score=36.69 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCHhH----HHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGESHE----MGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~~~----~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
.+|.+.+|..++.+..++++++++|=.++. ...+.+.+++.|. ++++++.|.++.+
T Consensus 244 ~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~----~~~~a~d~~~~~~ 303 (303)
T TIGR02649 244 RGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP----ATELANDFTVFNV 303 (303)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC----CCEecccccEEeC
Confidence 589999999999999999999999976532 3455555555553 4788888888753
No 67
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=63.19 E-value=8.5 Score=36.82 Aligned_cols=53 Identities=19% Similarity=0.242 Sum_probs=37.3
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEE
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSV 463 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~ 463 (525)
-+|.+.++..++.+.++|+++|++|=.......+.+.. . + ..++++++.|+++
T Consensus 186 ~~H~~~~~~~~~~~~~~~~~lil~H~~~~~~~~~~~~~-~-~---~~~~~~a~DG~~~ 238 (238)
T TIGR03307 186 RNHNDLTRALAINEQLRPKQVILTHISHQLDAWLMENP-D-L---PSGVAVGYDGQTL 238 (238)
T ss_pred CCcCCHHHHHHHHHHcCCCEEEEEecccccchHHHhhh-h-c---CCceEEecccccC
Confidence 46999999999999999999999999764322211111 1 1 1358888888753
No 68
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=60.65 E-value=7.9 Score=35.29 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=24.4
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEec
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVH 430 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vH 430 (525)
+.|.+.+++.++++.++|+++|++|
T Consensus 169 ~~h~~~~~~~~~~~~~~~~~~il~H 193 (194)
T PF12706_consen 169 PGHMTLEEALELAKELKAKKVILIH 193 (194)
T ss_dssp TTSBBHHHHHHHHHHHTTSEEEEES
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEC
Confidence 8899999999999999999999999
No 69
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=58.83 E-value=11 Score=33.50 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=20.6
Q ss_pred Eeeccc--CCCHHHHHHHHHhcCCCeEEEec
Q 044504 402 YISFSA--HADYAQTSTFLKELMPPNIILVH 430 (525)
Q Consensus 402 ~i~~S~--Had~~~l~~~i~~~~P~~vi~vH 430 (525)
-+++++ ..+.++..++++.++|+.|||+|
T Consensus 133 ~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 133 FLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp EEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred EecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 344554 35889999999999999999999
No 70
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=57.42 E-value=20 Score=33.65 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=42.0
Q ss_pred CCCCcEEEEcCCCCCCCCCChh-----HHHHHHHHHHHHHHhcCCeEEEcccchhhHHHHHHHHHHHHh
Q 044504 207 QFSPDICIIESTYGVQLHQPRN-----IREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEYWS 270 (525)
Q Consensus 207 ~~~~D~LI~Esty~~~~~~~~~-----~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~~~ 270 (525)
...+|+++++....-...+..+ .....+.+.+.++++.||.+++-+|.-++.++++..+...+.
T Consensus 115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~ 183 (209)
T PRK11188 115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFT 183 (209)
T ss_pred CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCce
Confidence 3478999986532111111111 112345666777889999999999988999999888776654
No 71
>PRK02113 putative hydrolase; Provisional
Probab=51.24 E-value=29 Score=33.40 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=40.1
Q ss_pred cccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 405 FSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 405 ~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
..+|.+.++..++++.++|++++++|=..+. ... ..+++.++ .++++...|.+++|
T Consensus 197 ~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~~-~~~-~~~~~~~~---~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 197 HPTHQSLEEALENIKRIGAKETYLIHMSHHI-GLH-ADVEKELP---PHVHFAYDGLEIIF 252 (252)
T ss_pred CCCcCCHHHHHHHHHHhCCCEEEEEcccccc-hhH-HHHHHhCC---CCceeccCceEEeC
Confidence 4589999999999999999999999954321 122 23444442 25788888887764
No 72
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=40.76 E-value=62 Score=32.13 Aligned_cols=57 Identities=16% Similarity=0.163 Sum_probs=44.8
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCHhH---HHHHHHHHHHHhccCCceEeeCCCCCEEEE
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGESHE---MGRLKTKLMTELADCNTKIITPKNCQSVEM 465 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~~~---~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~ 465 (525)
.+|+..+|..+..+..+.++++|.|=.++. ...+.+.+++.|. + ++++++.+.++++
T Consensus 232 ~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~~~~~~~~~ea~~~f~--~-~~~~a~D~~~~~v 291 (292)
T COG1234 232 GGHSTAEEAAEIAKEAGVKKLILTHFSPRYPKDDEELLKEARAIFP--G-ETIVARDGLVFEV 291 (292)
T ss_pred cCCCCHHHHHHHHHHcCCCeEEEEeecccccchHHHHHHHHHHhCC--C-ceEEeccceEEec
Confidence 349999999999999999999999987766 3444445555554 2 6999999998876
No 73
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=38.70 E-value=51 Score=28.38 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=29.9
Q ss_pred eecccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHH
Q 044504 403 ISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLM 444 (525)
Q Consensus 403 i~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~ 444 (525)
+.+|+|.+.+.|.+.++.++|++|++...+ ....+++.+.
T Consensus 28 ~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~--~~~~l~~~~~ 67 (129)
T PF02670_consen 28 VALSAGSNIEKLAEQAREFKPKYVVIADEE--AYEELKKALP 67 (129)
T ss_dssp EEEEESSTHHHHHHHHHHHT-SEEEESSHH--HHHHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHhCCCEEEEcCHH--HHHHHHHHhh
Confidence 468999999999999999999998775433 4455665553
No 74
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=37.01 E-value=29 Score=33.92 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=30.9
Q ss_pred ecccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHH
Q 044504 404 SFSAHADYAQTSTFLKELMPPNIILVHGESHEMGR 438 (525)
Q Consensus 404 ~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~ 438 (525)
+.|.|-..++..+|++..+|++++++|=....-.+
T Consensus 208 h~~~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~ 242 (269)
T COG1235 208 HLSNHLSAEEALELIEKLKPKRLVLTHLSHKNDDE 242 (269)
T ss_pred CCCCchhHHHHHHHHHhCCcceEEEEecCCCCCHH
Confidence 69999999999999999999999999977666544
No 75
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=33.83 E-value=1e+02 Score=27.97 Aligned_cols=62 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred CCCCcEEEEcCC--C-CCCC--CCChhHHHHHHHHHHHHHHhcCCeEEEcccchhhHHHHHHHHHHH
Q 044504 207 QFSPDICIIEST--Y-GVQL--HQPRNIREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEY 268 (525)
Q Consensus 207 ~~~~D~LI~Est--y-~~~~--~~~~~~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~ 268 (525)
..++|+++++.. + +... +....+..+.+.+.+.+.++.||++++-++...+.-+++..++..
T Consensus 96 ~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~ 162 (188)
T TIGR00438 96 DDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL 162 (188)
T ss_pred CCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh
Confidence 346899998753 1 2111 111112224566667778899999998777766777777666554
No 76
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=31.13 E-value=76 Score=30.24 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=53.3
Q ss_pred cccCC-CHHHHHHHHHhc-CCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEeeCccchhhhhhhhhcc
Q 044504 405 FSAHA-DYAQTSTFLKEL-MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLAEK 482 (525)
Q Consensus 405 ~S~Ha-d~~~l~~~i~~~-~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~~~~~~~~~~~l~~~ 482 (525)
+.+|- +.+.+..+++.+ .|++.+.||=+.++-..+.+.+++-... ..+|+...+ .+.+.=++-....+.-.+.+.
T Consensus 5 il~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~-~~nv~~v~~--r~~v~WG~~S~v~A~l~ll~~ 81 (244)
T PF02485_consen 5 ILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKLISC-FPNVHFVPK--RVDVRWGGFSLVEATLNLLRE 81 (244)
T ss_dssp EEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHHHCT--TTEEE-SS-------TTSHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHhccc-CCceeeccc--ccccccCCccHHHHHHHHHHH
Confidence 45666 999999999988 7899999999988655555555532211 124433322 244433332222222222111
Q ss_pred CCccCCeEEeEEEeeCCcccccCccchhhhhcc
Q 044504 483 TPEVGETVSGILVKKGFTYQIMAPDDLHIFSQL 515 (525)
Q Consensus 483 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 515 (525)
..+.....+-++.-.+.++-|.+++++.+|-.-
T Consensus 82 al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~ 114 (244)
T PF02485_consen 82 ALKRDGDWDYFILLSGQDYPLKSNEEIHEFLES 114 (244)
T ss_dssp HHHH-S---EEEEEETTEEESS-HHHHHHHHHH
T ss_pred HHhcCCCCcEEEEcccccccccchHHHHHHHHh
Confidence 111112345555666778889999888876543
No 77
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=30.19 E-value=1e+02 Score=28.82 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=51.0
Q ss_pred EEEEeecCCCCCcccCccCCCCCCCCcEEEEcCCCCCCCCCCh-hHHH----HHHHHHHHHHHhcCCeEEEcccchhhHH
Q 044504 185 RVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPR-NIRE----KRFTDVIHSTISQGGRVLIPAFALGRAQ 259 (525)
Q Consensus 185 ~ilytGD~~~~~~~~~~~~~~~~~~~D~LI~Esty~~~~~~~~-~~~~----~~l~~~i~~~~~~~g~vlip~fa~gr~q 259 (525)
-.++=||+...+..-.....++...+|+++.|..-...-+... ..+. ....+...+.+..+|..++.+|--+=..
T Consensus 87 V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~ 166 (205)
T COG0293 87 VIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFE 166 (205)
T ss_pred ceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHH
Confidence 3455678875543322112223334699998865432222211 1222 2333444455689999999999888888
Q ss_pred HHHHHHHHHHh
Q 044504 260 ELLLILDEYWS 270 (525)
Q Consensus 260 ell~~l~~~~~ 270 (525)
+++..+.+++.
T Consensus 167 ~~l~~~~~~F~ 177 (205)
T COG0293 167 DLLKALRRLFR 177 (205)
T ss_pred HHHHHHHHhhc
Confidence 88888887764
No 78
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=28.62 E-value=70 Score=30.40 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=25.2
Q ss_pred EEEecCCHhHHHHHHHHHHHHhccCCceEe
Q 044504 426 IILVHGESHEMGRLKTKLMTELADCNTKII 455 (525)
Q Consensus 426 vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~ 455 (525)
-|+|||+......|++.|++++..++++|-
T Consensus 220 siCvHGD~p~Al~~~~riR~~l~~~gi~v~ 249 (252)
T COG1540 220 SICVHGDNPHALAFARRIRAALEAEGIKVA 249 (252)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHHHcCCeee
Confidence 489999999999999999988876666654
No 79
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=28.35 E-value=1.1e+02 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.578 Sum_probs=9.2
Q ss_pred eEEEecCCHhHHH
Q 044504 425 NIILVHGESHEMG 437 (525)
Q Consensus 425 ~vi~vHGe~~~~~ 437 (525)
+||+|||+.....
T Consensus 1 kVFIvhg~~~~~~ 13 (125)
T PF10137_consen 1 KVFIVHGRDLAAA 13 (125)
T ss_pred CEEEEeCCCHHHH
Confidence 5899999655433
No 80
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=28.06 E-value=2.1e+02 Score=25.10 Aligned_cols=40 Identities=20% Similarity=0.065 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEcccchhhHHHHHHHHHHH
Q 044504 229 IREKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDEY 268 (525)
Q Consensus 229 ~~~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~~ 268 (525)
..++.++.++++++.+|.+|+|-|-.-.+.++|=..|..+
T Consensus 13 ~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 13 TLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 3445888999999999999999999988988887666544
No 81
>PF06288 DUF1040: Protein of unknown function (DUF1040); InterPro: IPR009383 This family consists of several bacterial YihD proteins of unknown function [].; PDB: 2KO6_A.
Probab=27.92 E-value=52 Score=25.63 Aligned_cols=20 Identities=35% Similarity=0.742 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHhcCCCC
Q 044504 256 GRAQELLLILDEYWSNHPEF 275 (525)
Q Consensus 256 gr~qell~~l~~~~~~~~~~ 275 (525)
.|+-|++++|..+|+++|++
T Consensus 4 hR~nELLELL~p~Wqk~pDL 23 (86)
T PF06288_consen 4 HRLNELLELLQPAWQKEPDL 23 (86)
T ss_dssp HHHHHHHHHTHHHHHSSTTS
T ss_pred chHHHHHHHhhHHHhcCCcc
Confidence 58999999999999998764
No 82
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=27.54 E-value=2e+02 Score=25.82 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEcccchhhHHHHHHHHHH
Q 044504 231 EKRFTDVIHSTISQGGRVLIPAFALGRAQELLLILDE 267 (525)
Q Consensus 231 ~~~l~~~i~~~~~~~g~vlip~fa~gr~qell~~l~~ 267 (525)
...+.+.+.+.++.||++++........++++..+.+
T Consensus 119 ~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~ 155 (179)
T TIGR00537 119 IDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155 (179)
T ss_pred HHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHh
Confidence 4567777788889999988877665557777776654
No 83
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=26.89 E-value=6.7e+02 Score=25.80 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=42.1
Q ss_pred EEEEEeecccCCCHHHHHHHHHhcCCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEe
Q 044504 398 MQVHYISFSAHADYAQTSTFLKELMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMY 466 (525)
Q Consensus 398 ~~v~~i~~S~Had~~~l~~~i~~~~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~ 466 (525)
|-|...++.--..+..|...|+.++... ++|-|..+-...|++.+..+ .+..-+++|+.|-++.-.
T Consensus 215 ~iInT~g~i~~egy~~llhai~~f~v~v-viVLg~ErLy~~lkk~~~~~--~~v~vv~lpKsgGv~~Rs 280 (415)
T KOG2749|consen 215 CIINTCGWIEGEGYAALLHAIKAFEVDV-VIVLGQERLYSSLKKDLPPK--KNVRVVKLPKSGGVVARS 280 (415)
T ss_pred eEEeccceeccccHHHHHHHHHHcCccE-EEEeccHHHHHHHHhhcccc--ccceEEEecCCCCeEeeh
Confidence 4466778888888899999999999874 55555554444444433211 112247788888777553
No 84
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=26.74 E-value=1.2e+02 Score=31.83 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=59.3
Q ss_pred ecccC-CCHHHHHHHHHhc-CCCeEEEecCCHhHHHHHHHHHHHHhcc-----CCceEeeCCCCCEEEEeeCcc-chh--
Q 044504 404 SFSAH-ADYAQTSTFLKEL-MPPNIILVHGESHEMGRLKTKLMTELAD-----CNTKIITPKNCQSVEMYFNSE-KMA-- 473 (525)
Q Consensus 404 ~~S~H-ad~~~l~~~i~~~-~P~~vi~vHGe~~~~~~l~~~l~~~~~~-----~~~~i~~p~~g~~~~~~~~~~-~~~-- 473 (525)
-.+|| -|.+++..+++.+ .|++.++||=+.+.-......+...... ...+|++...-..|.- ++- ..+
T Consensus 83 LI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~W--GG~S~V~At 160 (421)
T PLN03183 83 LVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTY--RGPTMVANT 160 (421)
T ss_pred EEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeecc--CChHHHHHH
Confidence 35778 8999999999999 8999999999887644333322211100 0125666443222222 221 121
Q ss_pred -hhhhhhhccCCccCCeEEeEEEeeCCcccccCccc-hhhhhccce
Q 044504 474 -KTIGRLAEKTPEVGETVSGILVKKGFTYQIMAPDD-LHIFSQLST 517 (525)
Q Consensus 474 -~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~ 517 (525)
..+..|.+.. ...+. .+.-.+.+|-|++++| +..|..+..
T Consensus 161 L~~m~~LL~~~-~~WDy---finLSGsDyPLkTqdelI~~F~~~nr 202 (421)
T PLN03183 161 LHACAILLKRS-KDWDW---FINLSASDYPLVTQDDLIHTFSTLDR 202 (421)
T ss_pred HHHHHHHHhhC-CCCCE---EEEccCCcccccCHHHHHHHHHhCCC
Confidence 1222332211 12222 3333456788888888 577776653
No 85
>PRK02126 ribonuclease Z; Provisional
Probab=25.34 E-value=1.2e+02 Score=30.68 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=27.2
Q ss_pred ccCCCHHHHHHHHHhcCCCeEEEecCCHhH
Q 044504 406 SAHADYAQTSTFLKELMPPNIILVHGESHE 435 (525)
Q Consensus 406 S~Had~~~l~~~i~~~~P~~vi~vHGe~~~ 435 (525)
++|.+.++..++.+..++++++++|=.+..
T Consensus 288 ~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~ 317 (334)
T PRK02126 288 KNHLTARQAGRLAREAGVKRLLPFHFSPRY 317 (334)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEecCccc
Confidence 689999999999999999999999977653
No 86
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only]
Probab=23.63 E-value=7.7e+02 Score=24.87 Aligned_cols=38 Identities=11% Similarity=0.315 Sum_probs=27.0
Q ss_pred CeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEee
Q 044504 424 PNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYF 467 (525)
Q Consensus 424 ~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~ 467 (525)
++|+.+|||+++..+-.+.+.++. ..-|..+.++++.+
T Consensus 179 ervvt~sge~e~~~~A~~~IL~Ki------~eDpqs~scln~sy 216 (402)
T KOG2191|consen 179 ERVVTVSGEPEQNMKAVSLILQKI------QEDPQSGSCLNISY 216 (402)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHh------hcCCcccceeccch
Confidence 579999999999888777776554 22366666666544
No 87
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=23.15 E-value=22 Score=39.16 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=48.2
Q ss_pred CCcEEEEEecCCCc--cCCcEEEEEECCeEEEEecCCCCCcCccccCCCCCCCCCCCccEEEcCCCchhHhcChHHHH
Q 044504 21 GDQLIITPLGAGNE--VGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFL 96 (525)
Q Consensus 21 ~~~m~i~~LG~~~e--vg~s~~ll~~~~~~iLiD~G~~~~~~~~~~~~~~~~~~~~~Id~IliTH~H~DH~gglp~l~ 96 (525)
+.-+-+.++|.+-. ......++-.+..+.++.||. +..++.....+...++|.||+|--+++-+||+|.+.
T Consensus 46 ~~~~~~~I~~~~~dt~~s~~~~~~~~~~~~~~~n~Ge-----g~qr~~~ehk~~~sk~~~iflt~~~w~~~GglpGl~ 118 (746)
T KOG2121|consen 46 NTIRYLQISGSGMDTQDSPLSVYLFDDRKRFIFNCGE-----GTQRLLTEHKIKLSKLDSIFLTRVCWSSCGGLPGLL 118 (746)
T ss_pred ceEEEEEEecCcccccccchhhhhhcchhhhhhhhhH-----HHHHHHHHhhhhhhhhhheEeecccHHHhCCCccce
Confidence 33556667777732 233444444577889999994 444333333455688999999999999999999763
No 88
>COG5399 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.87 E-value=1.5e+02 Score=25.04 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=39.4
Q ss_pred hHHHHHHHHcCCCCCcEEecccC---CCCChhHHhhcCCceeEee-cCeeeeeeEEEEEeecccCCCHHH
Q 044504 348 LSRQLFDIWCSDKKNACVIPGYV---VEGTLAKTIISEPKEVTLM-NGLTAPLNMQVHYISFSAHADYAQ 413 (525)
Q Consensus 348 ~~~~~~~~~~~~~~n~ii~~gy~---~~gt~~~~l~~~~~~~~~~-~g~~i~~~~~v~~i~~S~Had~~~ 413 (525)
.++++++.|-+-..+.|++-.++ .++-+-+.+++.-+..... .-.+..+...|+.|+||..=.-++
T Consensus 29 vA~eaLeeWdp~aSDFiVlRD~~eV~~p~pl~~evle~v~~~~~~~~e~e~~i~~PVY~Is~~new~~~~ 98 (139)
T COG5399 29 VAIEALEEWDPTASDFIVLRDFYEVSYPAPLSREVLEKVRKYSPKRVENEVEIALPVYEISHSNEWSVEG 98 (139)
T ss_pred HHHHHHHhcCCCcCceEEEecceeEEeeCCCCHHHHHHHHHhCccccCCeeEEEeeEEEEEecccccccc
Confidence 35678889977777778875443 3555666666543211111 112455667889999987644443
No 89
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.05 E-value=3.4e+02 Score=22.70 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=40.0
Q ss_pred HHHHHHHHHhc-----CCCeEEEecCCHhHHHHHHHHHHHHhccCCceEeeCCCCCEEEEeeC--ccchhhhhhhhhccC
Q 044504 411 YAQTSTFLKEL-----MPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFN--SEKMAKTIGRLAEKT 483 (525)
Q Consensus 411 ~~~l~~~i~~~-----~P~~vi~vHGe~~~~~~l~~~l~~~~~~~~~~i~~p~~g~~~~~~~~--~~~~~~~~~~l~~~~ 483 (525)
.+++.+.++.+ .|+-+++.-|+......+.+...+....-|+++ +.+.+... .+...+.+.+|
T Consensus 13 ~~~l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~------~~~~l~~~~~~~el~~~i~~l---- 82 (117)
T PF00763_consen 13 KEELKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEF------ELIELPEDISEEELLELIEKL---- 82 (117)
T ss_dssp HHHHHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EE------EEEEE-TTSSHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCce------EEEECCCCcCHHHHHHHHHHH----
Confidence 35566666665 377777778887776666655443322113333 23444322 23566666665
Q ss_pred CccCCeEEeEEEeeC
Q 044504 484 PEVGETVSGILVKKG 498 (525)
Q Consensus 484 ~~~~~~~~~~l~~~~ 498 (525)
.....|+|+|++.-
T Consensus 83 -N~D~~V~GIlvq~P 96 (117)
T PF00763_consen 83 -NEDPSVHGILVQLP 96 (117)
T ss_dssp -HH-TT-SEEEEESS
T ss_pred -hCCCCCCEEEEcCC
Confidence 34567999999876
Done!