BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044507
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 221 bits (563), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 98/159 (61%), Positives = 127/159 (79%), Gaps = 2/159 (1%)
Query: 1 MEGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
M+ I+H++V VNG+NMH+AE G+GP ILF+HGFPELWYSWRHQ+ LA GYRAVAPDLR
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 61 GFGDTDAPP--DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPD 118
G+GDT P D + ++ H++GD+V L++ +APN+EKVFVV HDWGA +AW LCLFRPD
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPD 127
Query: 119 RVKALVNLSVVFNPFGSINNVIEALRAYYGDNYYMCRFQ 157
+VKALVNLSV F+ NV+E L+A YG+++Y+ RFQ
Sbjct: 128 KVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQ 166
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 219 bits (559), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 127/159 (79%), Gaps = 2/159 (1%)
Query: 1 MEGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
M+ I+H++V VNG+NMH+AE G+GP ILF+HGFPELWYSWRHQ+ LA GYRAVAPDLR
Sbjct: 8 MKKIEHKMVAVNGLNMHLAELGEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLR 67
Query: 61 GFGDTDAPP--DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPD 118
G+GDT P D + ++ H++GD+V L++ +APN+EKVFVV HDWGA +AW LCLFRPD
Sbjct: 68 GYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPD 127
Query: 119 RVKALVNLSVVFNPFGSINNVIEALRAYYGDNYYMCRFQ 157
+VKALVNLSV F+ NV+E L+A +G+++Y+ RFQ
Sbjct: 128 KVKALVNLSVHFSKRNPKMNVVEGLKAIFGEDHYISRFQ 166
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
+ +H E G GP + HGFPE WYSWR+QI ALA GYR +A D++G+G++ APP++
Sbjct: 29 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 88
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y + ++V +D + + + VF +GHDWG + W++ LF P+RV+A+ +L+ F P
Sbjct: 89 YCMEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 146
Query: 134 GSINNVIEALRA 145
+ +E+++A
Sbjct: 147 NPNMSPLESIKA 158
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
+ +H E G GP + HGFPE WYSWR+QI ALA GYR +A D++G+G++ APP++
Sbjct: 248 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 307
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y + ++V +D + + + VF +GHDWG + W++ LF P+RV+A+ +L+ F P
Sbjct: 308 YCMEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 365
Query: 134 GSINNVIEALRA 145
+ +E+++A
Sbjct: 366 NPNMSPLESIKA 377
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 85/132 (64%), Gaps = 2/132 (1%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
+ +H E G GP + HGFPE WYSWR+QI ALA GYR +A D++G+G++ APP++
Sbjct: 44 VRLHFVELGSGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDMKGYGESSAPPEIEE 103
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNPF 133
Y + ++V +D + + + VF +GHDWG + W++ LF P+RV+A+ +L+ F P
Sbjct: 104 YCMEVLCKEMVTFLDKLGLS-QAVF-IGHDWGGMLVWYMALFYPERVRAVASLNTPFIPA 161
Query: 134 GSINNVIEALRA 145
+ +E+++A
Sbjct: 162 NPNMSPLESIKA 173
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 6 HRIVKVNGINMHIAEKG----QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
HRI+ G +H QGP+++ LHGFPE WYSWRHQI ALA GYR VA D RG
Sbjct: 11 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 70
Query: 62 FGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK 121
+G + +Y ++GD+VG++D+ E+ FVVGHDWGA +AW PDR
Sbjct: 71 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGA--EQAFVVGHDWGAPVAWTFAWLHPDRCA 128
Query: 122 ALVNLSVVFNPFGSIN 137
+V +SV F G I
Sbjct: 129 GVVGISVPFAGRGVIG 144
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 6/136 (4%)
Query: 6 HRIVKVNGINMHIAEKG----QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
HRI+ G +H QGP+++ LHGFPE WYSWRHQI ALA GYR VA D RG
Sbjct: 5 HRILNCRGTRIHAVADSPPDQQGPLVVLLHGFPESWYSWRHQIPALAGAGYRVVAIDQRG 64
Query: 62 FGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK 121
+G + +Y ++GD+VG++D+ E+ FVVGHDWGA +AW PDR
Sbjct: 65 YGRSSKYRVQKAYRIKELVGDVVGVLDSYGA--EQAFVVGHDWGAPVAWTFAWLHPDRCA 122
Query: 122 ALVNLSVVFNPFGSIN 137
+V +SV F G I
Sbjct: 123 GVVGISVPFAGRGVIG 138
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 116 bits (291), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 89/151 (58%), Gaps = 3/151 (1%)
Query: 4 IQHRIVKVN-GINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGF 62
+ H V V GI +H E G GP + HGFPE W+SWR+QI ALA G+R +A D++G+
Sbjct: 235 VSHGYVTVKPGIRLHFVEMGSGPALCLCHGFPESWFSWRYQIPALAQAGFRVLAIDMKGY 294
Query: 63 GDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
GD+ +PP++ Y + ++V +D + + VF +GHDW M W + LF P+RV+A
Sbjct: 295 GDSSSPPEIEEYAMELLCKEMVTFLDKLG-IPQAVF-IGHDWAGVMVWNMALFYPERVRA 352
Query: 123 LVNLSVVFNPFGSINNVIEALRAYYGDNYYM 153
+ +L+ F P + ++ +R+ NY +
Sbjct: 353 VASLNTPFMPPDPDVSPMKVIRSIPVFNYQL 383
>pdb|1EHY|A Chain A, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|B Chain B, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|C Chain C, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
pdb|1EHY|D Chain D, X-Ray Structure Of The Epoxide Hydrolase From
Agrobacterium Radiobacter Ad1
Length = 294
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 2 EGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
E +H V++ + +H +G GP +L LHG+P W+ W I LA Y + PDLRG
Sbjct: 7 EDFKHYEVQLPDVKIHYVREGAGPTLLLLHGWPGFWWEWSKVIGPLAE-HYDVIVPDLRG 65
Query: 62 FGDTDAPP--DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDR 119
FGD++ P D++ Y+ D L+D + EK +VVGHD+ A + DR
Sbjct: 66 FGDSEKPDLNDLSKYSLDKAADDQAALLDALGI--EKAYVVGHDFAAIVLHKFIRKYSDR 123
Query: 120 VKALVNLSVVFNPFGSI 136
V + FG +
Sbjct: 124 VIKAAIFDPIQPDFGPV 140
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 7 RIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
R V+V G + ++G G +LFLHG P Y WR+ I + + GYRAVAPDL G GD+
Sbjct: 12 RTVEVEGATIAYVDEGSGQPVLFLHGNPTSSYLWRNIIPYVVAAGYRAVAPDLIGXGDS- 70
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
A PD+ HV G ID + D+ V V+ HDWG+ + PDRV A+
Sbjct: 71 AKPDIEYRLQDHV-AYXDGFIDALG-LDDXVLVI-HDWGSVIGXRHARLNPDRVAAVAFX 127
Query: 127 SVVFNP 132
+ P
Sbjct: 128 EALVPP 133
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 2 EGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
EG + R+V V + ++ G GP +L LHGFP+ + W ++ L + Y V DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLRG 61
Query: 62 FGDTDAP---PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPD 118
+G + P PD +Y+ + D L+ T+ E+ +VGHD G + L PD
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLG--FERFHLVGHDRGGRTGHRMALDHPD 119
Query: 119 RVKALVNLSVV 129
V +L L ++
Sbjct: 120 SVLSLAVLDII 130
>pdb|4B9A|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa.
pdb|4B9E|A Chain A, Structure Of A Putative Epoxide Hydrolase From Pseudomonas
Aeruginosa, With Bound Mfa
Length = 301
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 7/150 (4%)
Query: 1 MEGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLR 60
+ G + + + + +A KG GP +L LHG+P+ +W H+I + Y V DLR
Sbjct: 8 LPGFDYLTLHTSAARLRVAVKGSGPPLLLLHGYPQTHLAW-HRIAPRLAEDYSVVLADLR 66
Query: 61 GFGDTDA-PPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDR 119
G+G++ A + Y+ + D + + + E+ V+GHD GA + + L L P
Sbjct: 67 GYGESRALDEEGADYSKAALARDQLETMGQL--GFERFAVIGHDRGARVGYRLALDHPQA 124
Query: 120 VKALVNLSVV--FNPFGSINNVIEALRAYY 147
V A V+L+VV + + ++N V AL AY+
Sbjct: 125 VAAFVSLTVVPILDNWAAVNKVF-ALNAYH 153
>pdb|3QYJ|A Chain A, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120.
pdb|3QYJ|B Chain B, Crystal Structure Of Alr0039, A Putative AlphaBETA
HYDROLASE FROM Nostoc Sp Pcc 7120
Length = 291
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ IV +++ + G G +L LHG+P+ W H+I L + + VA DLRG+GD
Sbjct: 6 EQTIVDTTEARINLVKAGHGAPLLLLHGYPQTHVMW-HKIAPLLANNFTVVATDLRGYGD 64
Query: 65 TDAP---PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK 121
+ P P +Y+ + D V ++ + E+ +VVGHD GA +A L L P RVK
Sbjct: 65 SSRPASVPHHINYSKRVMAQDQVEVMSKLG--YEQFYVVGHDRGARVAHRLALDHPHRVK 122
Query: 122 ALVNLSVV 129
L L +
Sbjct: 123 KLALLDIA 130
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLV 84
PV+L +HG E +W+ LA+ GYR VAPDL G G + VTSY+ + +
Sbjct: 27 PVVLCIHGILEQGLAWQEVALPLAAQGYRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQID 86
Query: 85 GLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
+I + D+ + +VGH GA +A + RP ++K L+
Sbjct: 87 RVIQELP--DQPLLLVGHSMGAMLATAIASVRPKKIKELI 124
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 2 EGIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
EG + R+V V + ++ G GP +L LHGFP+ + W ++ L + Y V DLRG
Sbjct: 3 EGFERRLVDVGDVTINCVVGGSGPALLLLHGFPQNLHMWA-RVAPLLANEYTVVCADLRG 61
Query: 62 FGDTDAP---PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPD 118
+G + P PD +Y+ + D L+ T+ E+ +VGH G + L PD
Sbjct: 62 YGGSSKPVGAPDHANYSFRAMASDQRELMRTLG--FERFHLVGHARGGRTGHRMALDHPD 119
Query: 119 RVKALVNLSVV 129
V +L L ++
Sbjct: 120 SVLSLAVLDII 130
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 3 GIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGF 62
G + +V+G+ +H + GQGP+++ +HGF + WY W HQ+ + + +APDL G
Sbjct: 9 GFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGL 67
Query: 63 GDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWG 105
G ++ P T Y+ V L L +P D +V HD G
Sbjct: 68 GQSEPPK--TGYSGEQVAVYLHKLARQFSP-DRPFDLVAHDIG 107
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 3 GIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGF 62
G + +V+G+ +H + GQGP+++ +HGF + WY W HQ+ + + +APDL G
Sbjct: 9 GFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGL 67
Query: 63 GDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWG 105
G ++ P T Y+ V L L +P D +V HD G
Sbjct: 68 GQSEPPK--TGYSGEQVAVYLHKLARQFSP-DRPFDLVAHDIG 107
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 3 GIQHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGF 62
G + +V+G+ +H + GQGP+++ +HGF + WY W HQ+ + + +APDL G
Sbjct: 9 GFESAYREVDGVKLHYVKGGQGPLVMLVHGFGQTWYEW-HQLMPELAKRFTVIAPDLPGL 67
Query: 63 GDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWG 105
G ++ P T Y+ V L L +P D +V HD G
Sbjct: 68 GQSEPPK--TGYSGEQVAVYLHKLARQFSP-DRPFDLVAHDIG 107
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
D YT L+ LI+ + + + +V DWG F+ L + P R K L+
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLI 145
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
D YT L+ LI+ + + + +V DWG F+ L + P R K L+
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLI 145
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
D YT L+ LI+ + + + +V DWG F+ L + P R K L+
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLI 145
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
D YT L+ LI+ + + + +V DWG F+ L + P R K L+
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLI 145
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
D YT L+ LI+ + + + +V DWG F+ L + P R K L+
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQDWGGFLGLTLPMADPSRFKRLI 145
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 71 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
Query: 127 SVVFNPFGSINNVIEALRAYY 147
+ PF + + E R +
Sbjct: 127 EFI-RPFPTWDEWPEFARETF 146
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSINNVIEALRAYY 147
+ PF + + E R +
Sbjct: 130 EFI-RPFPTWDEWPEFARETF 149
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 12 NGINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP 68
G+ MH ++G L LHG P + +R + + G R VAPDL GFG +D P
Sbjct: 31 EGLRMHYVDEGPRDAEHTFLCLHGEPSWSFLYRKMLPVFTAAGGRVVAPDLFGFGRSDKP 90
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSV 128
D YT L+ +D + E+V +V DWG + L + RP V L+ ++
Sbjct: 91 TDDAVYTFGFHRRSLLAFLDAL--QLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNT 148
Query: 129 VFNPFGSINNVIEALRAYYGDN 150
S E+ R + ++
Sbjct: 149 ALAVGLSPGKGFESWRDFVANS 170
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSINNVIEALRAYY 147
+ PF + + E R +
Sbjct: 130 EFI-RPFPTWDEWPEFARETF 149
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 8/141 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVVFNPFGSINNVIEALRAYY 147
+ PF + + E R +
Sbjct: 130 EFI-RPFPTWDEWPEFARETF 149
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ V E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEAVG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 13 GINMHIAEKGQGP---VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
G+ H ++G V L LHG P Y +R I A G R +APD GFG +D P
Sbjct: 33 GLRAHYLDEGNSDAEDVFLCLHGEPTWSYLYRKMIPVFAESGARVIAPDFFGFGKSDKPV 92
Query: 70 DVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
D YT L+ LI+ + + + +V WG F+ L + P R K L+
Sbjct: 93 DEEDYTFEFHRNFLLALIERL--DLRNITLVVQXWGGFLGLTLPMADPSRFKRLI 145
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 4 IQHRIVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
I+ R V G +M E G PV+LFLHG P + WR+ I L S +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 FGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK 121
FG + P D+ +Y F + L I+ ++V DWG +A+ L RPD V+
Sbjct: 66 FGQSGKP-DI-AYRFFDHVRYLDAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVR 121
Query: 122 ALVNLSVV 129
L + +
Sbjct: 122 GLAFMEFI 129
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 4 IQHRIVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
I+ R V G +M E G PV+LFLHG P + WR+ I L S +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 FGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK 121
FG + P D+ +Y F + L I+ ++V DWG +A+ L RPD V+
Sbjct: 66 FGQSGKP-DI-AYRFFDHVRYLDAFIEQRGVT--SAYLVAQDWGTALAFHLAARRPDFVR 121
Query: 122 ALVNLSVV 129
L + +
Sbjct: 122 GLAFMEFI 129
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 4 IQHRIVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRG 61
I+ R V G +M E G PV+LFLHG P + WR+ I L S +APDL G
Sbjct: 7 IEIRRAPVLGSSMAYRETGAQDAPVVLFLHGNPTSSHIWRN-ILPLVSPVAHCIAPDLIG 65
Query: 62 FGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK 121
FG + P D+ +Y F + L I+ ++V DWG +A+ L RPD V+
Sbjct: 66 FGQSGKP-DI-AYRFFDHVRYLDAFIEQRGVTS--AYLVAQDWGTALAFHLAARRPDFVR 121
Query: 122 ALVNLSVV 129
L + +
Sbjct: 122 GLAFMEFI 129
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 15 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 73
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 74 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 129
Query: 127 SVV 129
+
Sbjct: 130 EFI 132
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 9 VKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V+V G MH + G G +LFLHG P Y WR+ I +A +R +APDL G G +D
Sbjct: 12 VEVLGERMHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAP-SHRCIAPDLIGMGKSD 70
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P D+ + HV L I+ + E+V +V HDWG+ + + P+RVK + +
Sbjct: 71 KP-DLDYFFDDHV-RYLDAFIEALG--LEEVVLVIHDWGSALGFHWAKRNPERVKGIACM 126
Query: 127 SVV 129
+
Sbjct: 127 EFI 129
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With 1,3-Propandiol
Length = 300
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
Q + +++ G M ++G+G I+F HG P Y WR+ + L LG R VA DL G G
Sbjct: 11 QPKYLEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 69
Query: 65 TD--APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
+D +P Y+ L L D + D V V+ HDWG+ + + DRV+
Sbjct: 70 SDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVL-HDWGSALGFDWANQHRDRVQG 128
Query: 123 LVNLSVVFNPFG------SINNVIEALRAYYGD 149
+ + + P ++ V + R+ G+
Sbjct: 129 IAFMEAIVTPMTWADWPPAVRGVFQGFRSPQGE 161
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
Q + +++ G M ++G+G I+F HG P Y WR+ + L LG R VA DL G G
Sbjct: 9 QPKYLEIAGKRMAYIDEGKGDAIVFQHGNPTSSYLWRNIMPHLEGLG-RLVACDLIGMGA 67
Query: 65 TD--APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
+D +P Y+ L L D + D V V+ HDWG+ + + DRV+
Sbjct: 68 SDKLSPSGPDRYSYGEQRDFLFALWDALDLGDHVVLVL-HDWGSALGFDWANQHRDRVQG 126
Query: 123 LVNLSVVFNPFG------SINNVIEALRAYYGD 149
+ + + P ++ V + R+ G+
Sbjct: 127 IAFMEAIVTPMTWADWPPAVRGVFQGFRSPQGE 159
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP 68
V +G ++ + G G +LF HG+P W +Q+ L+S GYR +A D RGFG +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAF-MAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGS 135
V FG
Sbjct: 120 AVTPLFGQ 127
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP 68
V +G ++ + G G +LF HG+P W +Q+ L+S GYR +A D RGFG +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAF-MAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGS 135
V FG
Sbjct: 120 AVTPIFGQ 127
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFP--ELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVT 72
N H +GQ PVIL P + +WR I AL+ YR +APD+ GFG TD P +
Sbjct: 18 NYHDVGEGQ-PVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPENY- 74
Query: 73 SYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNP 132
+Y+ + ++G++D A EK +VG+ +G +A L +RV +V + V
Sbjct: 75 NYSKDSWVDHIIGIMD--ALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTR 132
Query: 133 FGSINNVIEALRAYYG 148
F +V E L A +G
Sbjct: 133 F----DVTEGLNAVWG 144
>pdb|1IZ7|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26 At
1.6 A Resolution
pdb|1IZ8|A Chain A, Re-Refinement Of The Structure Of Hydrolytic Haloalkane
Dehalogenase Linb From Sphingomonas Paucimobilis Ut26
With 1,3-Propanediol, A Product Of Debromidation Of
Dibrompropane, At 2.0a Resolution
pdb|1K5P|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.8a Resolution
pdb|1K63|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis With Ut26
2-Bromo-2-Propene-1-Ol At 1.8a Resolution
pdb|1K6E|A Chain A, Complex Of Hydrolytic Haloalkane Dehalogenase Linb From
Sphingomonas Paucimobilis Ut26 With 1,2-Propanediol
(Product Of Dehalogenation Of 1,2-Dibromopropane) At
1.85a
Length = 295
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 9 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 67
Query: 65 TDA--PPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
+D P Y L L + + D V VV HDWG+ + + +RV+
Sbjct: 68 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERVQG 126
Query: 123 LVNLSVVFNPF------GSINNVIEALRAYYGDNYYM 153
+ + + P ++ +A R+ G+ +
Sbjct: 127 IAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 163
>pdb|1G5F|A Chain A, Structure Of Linb Complexed With 1,2-Dichloroethane
pdb|1G4H|A Chain A, Linb Complexed With Butan-1-Ol
pdb|1G42|A Chain A, Structure Of 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene
Hydrolase (Linb) From Sphingomonas Paucimobilis
Complexed With 1,2-Dichloropropane
Length = 296
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TDA--PPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
+D P Y L L + + D V VV HDWG+ + + +RV+
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERVQG 127
Query: 123 LVNLSVVFNPF------GSINNVIEALRAYYGDNYYM 153
+ + + P ++ +A R+ G+ +
Sbjct: 128 IAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 164
>pdb|1MJ5|A Chain A, Linb (Haloalkane Dehalogenase) From Sphingomonas
Paucimobilis Ut26 At Atomic Resolution
Length = 302
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TDA--PPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
+D P Y L L + + D V VV HDWG+ + + +RV+
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERVQG 127
Query: 123 LVNLSVVFNPF------GSINNVIEALRAYYGDNYYM 153
+ + + P ++ +A R+ G+ +
Sbjct: 128 IAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 164
>pdb|1CV2|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 At 1.6 A Resolution
pdb|1D07|A Chain A, Hydrolytic Haloalkane Dehalogenase Linb From Sphingomonas
Paucimobilis Ut26 With 1,3-Propanediol, A Product Of
Debromidation Of Dibrompropane, At 2.0a Resolution
pdb|2BFN|A Chain A, The Crystal Structure Of The Complex Of The Haloalkane
Dehalogenase Linb With The Product Of Dehalogenation
Reaction 1,2-Dichloropropane
Length = 296
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 5 QHRIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGD 64
+ + +++ G M ++G G ILF HG P Y WR+ + A LG R +A DL G GD
Sbjct: 10 EKKFIEIKGRRMAYIDEGTGDPILFQHGNPTSSYLWRNIMPHCAGLG-RLIACDLIGMGD 68
Query: 65 TDA--PPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
+D P Y L L + + D V VV HDWG+ + + +RV+
Sbjct: 69 SDKLDPSGPERYAYAEHRDYLDALWEALDLGDRVVLVV-HDWGSALGFDWARRHRERVQG 127
Query: 123 LVNLSVVFNPF------GSINNVIEALRAYYGDNYYM 153
+ + + P ++ +A R+ G+ +
Sbjct: 128 IAYMEAIAMPIEWADFPEQDRDLFQAFRSQAGEELVL 164
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 33 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 90
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFN 131
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 91 YRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 147
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 91
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFN 131
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 92 YRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 148
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 34 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 91
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFN 131
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 92 YRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 148
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
IN + +EK ++FLHG Y WRH + + + R + PDL G G + + S
Sbjct: 33 INYYDSEKHAENAVIFLHGNATSSYLWRHVVPHIEPVA-RCIIPDLIGMGKSGKSGN-GS 90
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFN 131
Y L + + +K+ VGHDWGA +A+ DR+KA+V++ V +
Sbjct: 91 YRLLDHYKYLTAWFELLNL-PKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMESVVD 147
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + P
Sbjct: 12 TSIDLYYEDHGTGVPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG 71
Query: 72 TSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGA-FMAWFLCLFRPDRVKALVNLSVVF 130
Y F DL +++T+ D +VG G +A ++ + R+ A+ L+ +
Sbjct: 72 YDYDTF--AADLNTVLETLDLQD--AVLVGFSMGTGEVARYVSSYGTARIAAVAFLASL- 126
Query: 131 NPF 133
PF
Sbjct: 127 EPF 129
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 7 RIVKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
R V + I +++ EKG GP+ LF HG + L+ + +A D RG G +D
Sbjct: 51 RRVDIGRITLNVREKGSGPLXLFFHGITSNSAVFEPLXIRLSDR-FTTIAVDQRGHGLSD 109
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
P T Y D+ GLI T+A +VGH GA + PD V+++V
Sbjct: 110 KPE--TGYEANDYADDIAGLIRTLARG--HAILVGHSLGARNSVTAAAKYPDLVRSVV-- 163
Query: 127 SVVFNPF 133
++ F P+
Sbjct: 164 AIDFTPY 170
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFP--ELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVT 72
N H +GQ PVIL P + +WR I AL+ YR +APD+ GFG TD P +
Sbjct: 18 NYHDVGEGQ-PVILIHGSGPGVSAYANWRLTIPALSKF-YRVIAPDMVGFGFTDRPENY- 74
Query: 73 SYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNP 132
+Y+ + ++G++D A EK +VG+ +G +A L +RV +V +
Sbjct: 75 NYSKDSWVDHIIGIMD--ALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTR 132
Query: 133 FGSINNVIEALRAYYG 148
F +V E L A +G
Sbjct: 133 F----DVTEGLNAVWG 144
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + P
Sbjct: 11 TSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG 70
Query: 72 TSYTCFHVIGDLVGLIDTVAPND 94
Y F DL +++T+ D
Sbjct: 71 YDYDTF--AADLNTVLETLDLQD 91
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + P
Sbjct: 11 TSIDLYYEDHGTGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG 70
Query: 72 TSYTCFHVIGDLVGLIDTVAPND 94
Y F DL +++T+ D
Sbjct: 71 YDYDTF--AADLNTVLETLDLQD 91
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDV 71
I+++ + G G ++ +HGFP +SW Q AL GYR + D RGFG + P
Sbjct: 11 TSIDLYYEDHGAGQPVVLIHGFPLSGHSWERQSAALLDAGYRVITYDRRGFGQSSQPTTG 70
Query: 72 TSYTCFHVIGDLVGLIDTVAPND 94
Y F DL +++T+ D
Sbjct: 71 YDYDTF--AADLNTVLETLDLQD 91
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP 68
V +G ++ + G G +LF HG+ W +Q+ L+S GYR +A D RGFG +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAF-MAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGS 135
V FG
Sbjct: 120 AVTPLFGQ 127
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP 68
V +G ++ + G G +LF HG+ W +Q+ L+S GYR +A D RGFG +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAF-MAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGS 135
V FG
Sbjct: 120 AVTPLFGQ 127
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP 68
V +G ++ + G G +LF HG+ W +Q+ L+S GYR +A D RGFG +D P
Sbjct: 4 VAKDGTQIYFKDWGSGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQP 63
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAF-MAWFLCLFRPDRVKALVNLS 127
Y F D+ LI+ + + ++V +VG G +A ++ RV LV L
Sbjct: 64 WTGNDYDTF--ADDIAQLIEHL--DLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
Query: 128 VVFNPFGS 135
V FG
Sbjct: 120 AVTPLFGQ 127
>pdb|3R41|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
pdb|3R41|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnAPO
Length = 306
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D P +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPNDEKVF-VVGHDWGAFMAWFLCLFRPDRVKALVNLSVV 129
LI+ + F + GHD GA +++ L L P R+ L L ++
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|3R3U|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3U|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtAPO
pdb|3R3Z|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|C Chain C, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
pdb|3R3Z|D Chain D, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - WtGLYCOLATE
Length = 306
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D P +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPNDEKVF-VVGHDWGAFMAWFLCLFRPDRVKALVNLSVV 129
LI+ + F + GHD GA +++ L L P R+ L L ++
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHDRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWR-HQITALASLGYRAVAPDLRGFGDTDAPPDVT 72
IN+ + G G ++F+ G +W HQ+ A + GYR + D RG G T+ +
Sbjct: 33 INLAYDDNGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATE---NAE 89
Query: 73 SYTCFHVIGDLVGLIDT--VAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSV 128
+T ++ D LI+T +AP VVG GAF+A L + P+ V + V ++
Sbjct: 90 GFTTQTMVADTAALIETLDIAP----ARVVGVSMGAFIAQELMVVAPELVSSAVLMAT 143
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 13/141 (9%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
I ++ ++G G ++ +HG+P +SW Q L + GYR + D RGFG +
Sbjct: 13 IELYYEDQGSGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSSKVNTGYD 72
Query: 74 YTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGA-FMAWFLCLFRPDRVKALVNLSVVF-- 130
Y F DL +++T+ D V +VG G +A ++ + +RV L L+ +
Sbjct: 73 YDTF--AADLHTVLETLDLRD--VVLVGFSMGTGELARYVARYGHERVAKLAFLASLEPF 128
Query: 131 ------NPFGSINNVIEALRA 145
NP G V + + A
Sbjct: 129 LVQRDDNPEGVPQEVFDGIEA 149
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 14 INMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTS 73
I ++ + G G ++ +HG+P SW +Q+ AL GYR + D RGFG + P +
Sbjct: 17 IEIYYEDHGTGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSSQPWEGYE 76
Query: 74 YTCF 77
Y F
Sbjct: 77 YDTF 80
>pdb|3R3V|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3V|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnFLUOROACETATE
pdb|3R3W|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3W|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnCHLOROACETATE
pdb|3R3X|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R3X|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnBROMOACETATE
pdb|3R40|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
pdb|3R40|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - Asp110asnAPO
Length = 306
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D P +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPNDEKVF-VVGHDWGAFMAWFLCLFRPDRVKALVNLSVV 129
LI+ + F + GH+ GA +++ L L P R+ L L ++
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|3R3Y|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
pdb|3R3Y|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase
Rpa1163 - His280asnFLUOROACETATE
Length = 306
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIG 81
G GP +L LHGFP+ W H++ + ++ + DL G+G +D P +T +
Sbjct: 31 GDGPPLLLLHGFPQTHVMW-HRVAPKLAERFKVIVADLPGYGWSDMPESDEQHTPYTKRA 89
Query: 82 DLVGLIDTVAPNDEKVF-VVGHDWGAFMAWFLCLFRPDRVKALVNLSVV 129
LI+ + F + GH GA +++ L L P R+ L L ++
Sbjct: 90 MAKQLIEAMEQLGHVHFALAGHXRGARVSYRLALDSPGRLSKLAVLDIL 138
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAP--- 68
+G ++ + G G I+F HG+P SW Q+ LA+ GYR +A D RG G + P
Sbjct: 7 DGTQIYYKDWGSGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPWSG 66
Query: 69 PDVTSYTCFHVIGDLVGLIDTVAPNDEKVF 98
D+ +Y DL LI+ + D +F
Sbjct: 67 NDMDTYA-----DDLAQLIEHLDLRDAVLF 91
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 12 NGINMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
+G+ + + GQG ++F+HG+P +W+ Q+ A+ GYR +A D RG G
Sbjct: 7 DGVEIFYKDWGQGRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHG 58
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 7/115 (6%)
Query: 20 EKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHV 79
+K G IL HG +W I LA GYR +A D GF + P Y+ +
Sbjct: 42 KKANGRTILLXHGKNFCAGTWERTIDVLADAGYRVIAVDQVGFCKSSKPAHY-QYSFQQL 100
Query: 80 IGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNPFG 134
+ L++ + + V+GH G +A L P +V+ L V+ NP G
Sbjct: 101 AANTHALLERLGV--ARASVIGHSXGGXLATRYALLYPRQVERL----VLVNPIG 149
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 22 GQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG------DTDAPPDVTSYT 75
G P ++FLHG + ++W T + LG A+A DL G G D + P + S T
Sbjct: 79 GSAPRVIFLHGGGQNAHTWD---TVIVGLGEPALAVDLPGHGHSAWREDGNYSPQLNSET 135
Query: 76 CFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVV 129
V+ +L AP E FVVG G A L PD V LV + V
Sbjct: 136 LAPVLREL-------APGAE--FVVGMSLGGLTAIRLAAMAPDLVGELVLVDVT 180
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 6 HRIVKVNGINMHIAEKGQGPVILFLH---GFPELWYSWRHQITALASLGYRAVAPDLRGF 62
R V G+ E G+G ++ +H E +WR+ I LA YR +A D+ GF
Sbjct: 18 ERFVNAGGVETRYLEAGKGQPVILIHGGGAGAESEGNWRNVIPILAR-HYRVIAMDMLGF 76
Query: 63 GDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKA 122
G T A PD+ YT I L I + D KV +VG+ G + + + V A
Sbjct: 77 GKT-AKPDI-EYTQDRRIRHLHDFIKAMN-FDGKVSIVGNSMGGATGLGVSVLHSELVNA 133
Query: 123 LV 124
LV
Sbjct: 134 LV 135
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 18 IAEKGQGPVILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSY 74
+A Q P ++ LHG +WR I LA + VAPDL GFG ++ P +
Sbjct: 23 VAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAE-NFFVVAPDLIGFGQSEYPETYPGH 81
Query: 75 TCFHV---IGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFN 131
V + ++GL++ EK +VG+ G + L + P+R + + V
Sbjct: 82 IMSWVGMRVEQILGLMNHF--GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGA 139
Query: 132 PFGSINNVIEALRAYYGD 149
P + + L A+Y D
Sbjct: 140 PMNARPPELARLLAFYAD 157
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 15/154 (9%)
Query: 8 IVKVNGINMHIAEKG--QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
+ +G N+ + G G ++F HG+P W +Q+ S GYR +A D RG G +
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHGRS 62
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDW-GAFMAWFLCLFRPDRVKALV 124
D P T + D+ L T A + +GH G +A ++ P RV V
Sbjct: 63 DQP--STGHDMDTYAADVAAL--TEALDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAV 118
Query: 125 NLSVV--------FNPFGSINNVIEALRAYYGDN 150
+S V NP G V + RA N
Sbjct: 119 LVSAVPPVMVKSDTNPDGLPLEVFDEFRAALAAN 152
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF++G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V +N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF++G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V +N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF++G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V +N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF++G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V +N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF++G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLMGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V +N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 2 EGIQHRIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYR 53
E + VK+N N+H E G G ++ LHG W ++ + GYR
Sbjct: 6 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR 65
Query: 54 AVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLC 113
+ D GF +DA + + GL+D A + ++ +VG+ G A
Sbjct: 66 VILKDSPGFNKSDAVVMDEQRGLVNARA-VKGLMD--ALDIDRAHLVGNSMGGATALNFA 122
Query: 114 LFRPDRVKALV 124
L PDR+ L+
Sbjct: 123 LEYPDRIGKLI 133
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 2 EGIQHRIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYR 53
E + VK+N N+H E G G ++ LHG W ++ + GYR
Sbjct: 6 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR 65
Query: 54 AVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLC 113
+ D GF +DA + + GL+D A + ++ +VG+ G A
Sbjct: 66 VILKDSPGFNKSDAVVMDEQRGLVNARA-VKGLMD--ALDIDRAHLVGNSMGGATALNFA 122
Query: 114 LFRPDRVKALV 124
L PDR+ L+
Sbjct: 123 LEYPDRIGKLI 133
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALAS-LGYRAVAPDLRGFGDTDA--PPDVTSYTCFHV 79
+GPV+L LHG SW A+ S + R VA DLR G+T P D+++ T
Sbjct: 37 EGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKD 96
Query: 80 IGDLVGLIDTVAPNDEKVFVVGHDWGAFMA 109
+G++V + P + ++GH G +A
Sbjct: 97 VGNVVEAMYGDLP--PPIMLIGHSMGGAIA 124
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + ++ +HG P + + + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF++G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLMGSAYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V +N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEMNRLIDELPAKYRD 154
>pdb|2XUA|A Chain A, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
pdb|2XUA|H Chain H, Crystal Structure Of The Enol-Lactonase From Burkholderia
Xenovorans Lb400
Length = 266
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 11 VNGINMHI----AEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
VNG +H G P I+ + W Q+ AL S +R + D RG G ++
Sbjct: 9 VNGTELHYRIDGERHGNAPWIVLSNSLGTDLSXWAPQVAAL-SKHFRVLRYDTRGHGHSE 67
Query: 67 APPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVK--ALV 124
AP YT + GD++GL DT+ + G G L DR++ AL
Sbjct: 68 APKG--PYTIEQLTGDVLGLXDTL--KIARANFCGLSXGGLTGVALAARHADRIERVALC 123
Query: 125 NLSV 128
N +
Sbjct: 124 NTAA 127
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 2 EGIQHRIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYR 53
E + VK+N N+H E G G ++ LHG W ++ + GYR
Sbjct: 6 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR 65
Query: 54 AVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLC 113
+ D GF +DA + + GL+D A + ++ +VG+ G A
Sbjct: 66 VILKDSPGFNKSDAVVMDEQRGLVNARA-VKGLMD--ALDIDRAHLVGNAMGGATALNFA 122
Query: 114 LFRPDRVKALV 124
L PDR+ L+
Sbjct: 123 LEYPDRIGKLI 133
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 2 EGIQHRIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYR 53
E + VK+N N+H E G G ++ LHG W ++ + GYR
Sbjct: 6 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR 65
Query: 54 AVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLC 113
+ D GF +DA + + GL+D A + ++ +VG+ G A
Sbjct: 66 VILKDSPGFNKSDAVVMDEQRGLVNARA-VKGLMD--ALDIDRAHLVGNAMGGATALNFA 122
Query: 114 LFRPDRVKALV 124
L PDR+ L+
Sbjct: 123 LEYPDRIGKLI 133
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 2 EGIQHRIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYR 53
E + VK+N N+H E G G ++ LHG W ++ + GYR
Sbjct: 6 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR 65
Query: 54 AVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLC 113
+ D GF +DA + + GL+D A + ++ +VG+ G A
Sbjct: 66 VILKDSPGFNKSDAVVMDEQRGLVNARA-VKGLMD--ALDIDRAHLVGNAMGGATALNFA 122
Query: 114 LFRPDRVKALV 124
L PDR+ L+
Sbjct: 123 LEYPDRIGKLI 133
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 2 EGIQHRIVKVN-----GINMHIAEKGQGPVILFLHGFPEL---WYSWRHQITALASLGYR 53
E + VK+N N+H E G G ++ LHG W ++ + GYR
Sbjct: 3 ESSTSKFVKINEKGFSDFNIHYNEAGNGETVIMLHGGGPGAGGWSNYYRNVGPFVDAGYR 62
Query: 54 AVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLC 113
+ D GF +DA + + GL+D A + ++ +VG+ G A
Sbjct: 63 VILKDSPGFNKSDAVVMDEQRGLVNARA-VKGLMD--ALDIDRAHLVGNAMGGATALNFA 119
Query: 114 LFRPDRVKALV 124
L PDR+ L+
Sbjct: 120 LEYPDRIGKLI 130
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALAS-LGYRAVAPDLRGFGDTDA--PPDVTSYTCFHV 79
+GPV+L LHG SW A+ S + R VA DLR G+T P D+++ T
Sbjct: 41 EGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKD 100
Query: 80 IGDLVGLIDTVAPNDEKVFVVGHDWGAFMA 109
+G++V + P + ++GH G +A
Sbjct: 101 VGNVVEAMYGDLP--PPIMLIGHAMGGAIA 128
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 9 VKVNG-INMHIAEKGQGPVILFLHGFPELWYSWRHQITA----LASLGYRAVAPDLRGFG 63
+K+N ++M + P+ + +HGF +S I A L +G + D+ G G
Sbjct: 11 IKLNAYLDMPKNNPEKCPLCIIIHGF--TGHSEERHIVAVQETLNEIGVATLRADMYGHG 68
Query: 64 DTDAPPDVTSYTCFHVIGDLVGLIDTVAPND--EKVFVVGHDWGAFMAWFLCLFRPDRVK 121
+D +T F + +++ ++D D +++ GH G D +K
Sbjct: 69 KSDGK--FEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIK 126
Query: 122 ALVNLS 127
AL+ LS
Sbjct: 127 ALIPLS 132
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 14 INMHIAEKGQG-PVILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPP 69
+ +H + GQG ++ LHG W ++ I L GYR + D G+G +D+
Sbjct: 25 LRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVV 84
Query: 70 DVTSYTCFH--VIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
+ S + + ++ +V +D K+ ++G+ G + L P+RV LV
Sbjct: 85 NSGSRSDLNARILKSVVDQLDIA-----KIHLLGNSMGGHSSVAFTLKWPERVGKLV 136
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 78 HVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNP 132
+V+ +L LI+++ P +K + GH G A + L P+R +++ S + NP
Sbjct: 124 YVVNELPELIESMFPVSDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNP 178
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSY 74
N+ + G+ ++L HGF W+H + L YR V D G G T+ PD +
Sbjct: 27 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDF 82
Query: 75 TCFHVIG----DLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+ + DL+ +++ + E VGH A + L RPD +V +S
Sbjct: 83 DRYSNLEGYSFDLIAILEDLKI--ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMIS 137
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSY 74
N+ + G+ ++L HGF W+H + L YR V D G G T+ PD +
Sbjct: 11 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDF 66
Query: 75 TCFHVIG----DLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+ + DL+ +++ + E VGH A + L RPD +V +S
Sbjct: 67 DRYSNLEGYSFDLIAILEDL--KIESCIFVGHSVSAMIGVLASLNRPDLFSKIVMIS 121
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 15 NMHIAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSY 74
N+ + G+ ++L HGF W+H + L YR V D G G T+ PD +
Sbjct: 9 NVKVIGSGEATIVLG-HGFGTDQSVWKHLVPHLVD-DYRVVLYDNMGAGTTN--PDYFDF 64
Query: 75 TCFHVIG----DLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+ + DL+ +++ + E VGH A + L RPD +V +S
Sbjct: 65 DRYSNLEGYSFDLIAILEDLKI--ESCIFVGHSVSAMIGVLASLNRPDLFSKIVMIS 119
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 78 HVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVFNP 132
+V+ +L LI++ P +K + GH G A + L P+R +++ S + NP
Sbjct: 124 YVVNELPELIESXFPVSDKRAIAGHSXGGHGALTIALRNPERYQSVSAFSPINNP 178
>pdb|3PF8|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
pdb|3PF8|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536
Length = 270
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVG 85
+ HGF + R +L +V D G GD+D + T + I D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGK--FENMTVLNEIEDANA 107
Query: 86 LIDTVA--PNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+++ V P+ +++VGH G +A L PD +K +V L+
Sbjct: 108 ILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 24 GPV-ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGD 82
GPV +L +HGF +S R A A GY P L+G G + T FH D
Sbjct: 39 GPVGVLLVHGFTGTPHSMRPLAEAYAKAGYTVCLPRLKGHGTHY---EDMERTTFH---D 92
Query: 83 LVGLIDT----VAPNDEKVFVVGHDWGAFMAWFLCLFRPD 118
V ++ + + +FV G G + +L PD
Sbjct: 93 WVASVEEGYGWLKQRCQTIFVTGLSMGGTLTLYLAEHHPD 132
>pdb|3PF9|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant
pdb|3PFB|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFB|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate
pdb|3PFC|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Ferulic
Acid
pdb|3S2Z|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
pdb|3S2Z|B Chain B, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With Caffeic
Acid
Length = 270
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVG 85
+ HGF + R +L +V D G GD+D + T + I D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGK--FENMTVLNEIEDANA 107
Query: 86 LIDTVA--PNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+++ V P+ +++VGH G +A L PD +K +V L+
Sbjct: 108 ILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 25 PVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLV 84
PVI F HG+P W Q+ + GYR VA D RG G + D + H D+
Sbjct: 23 PVIHFHHGWPLSADDWDAQLLFFLAHGYRVVAHDRRGHGRSSQVWD--GHDMDHYADDVA 80
Query: 85 GLIDTVAPNDEKVFVVGHDW-GAFMAWFLCLFRPDRVKALVNLSVV--------FNPFGS 135
++ + + VGH G + ++ D+V V ++ V NP G
Sbjct: 81 AVVAHLGI--QGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAVPPLMVQTPGNPGGL 138
Query: 136 INNVIEALRAYYGDN 150
+V + +A N
Sbjct: 139 PKSVFDGFQAQVASN 153
>pdb|3QM1|A Chain A, Crystal Structure Of The Lactobacillus Johnsonii Cinnamoyl
Esterase Lj0536 S106a Mutant In Complex With
Ethylferulate, Form Ii
Length = 265
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 28 LFLHGFPELWYS--WRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVG 85
+ HGF + R +L +V D G GD+D + T + I D
Sbjct: 50 IIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGK--FENMTVLNEIEDANA 107
Query: 86 LIDTVA--PNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+++ V P+ +++VGH G +A L PD +K +V L+
Sbjct: 108 ILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLA 151
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 24 GPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDL 83
G +F+HG P S H+ Y+ + D RG G + + + T +H++ D+
Sbjct: 37 GKPAVFIHGGPGGGISPHHR-QLFDPERYKVLLFDQRGCGRSRPHASLDNNTTWHLVADI 95
Query: 84 VGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV 124
L + E+ V G WG+ +A P+RV +V
Sbjct: 96 ERLREMAGV--EQWLVFGGSWGSTLALAYAQTHPERVSEMV 134
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 32.7 bits (73), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 8/147 (5%)
Query: 9 VKVNGINMH---IAEKGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDT 65
KVNGI ++ + + HG P + + + G + D G G +
Sbjct: 10 AKVNGIYIYYKLCKAPEEKAKLXTXHGGPGXSHDYLLSLRDXTKEGITVLFYDQFGCGRS 69
Query: 66 DAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALV- 124
+ P D + +T + + + L + N EKVF+ G +G +A + D +K L+
Sbjct: 70 EEP-DQSKFTIDYGVEEAEALRSKLFGN-EKVFLXGSSYGGALALAYAVKYQDHLKGLIV 127
Query: 125 --NLSVVFNPFGSINNVIEALRAYYGD 149
LS V N +I+ L A Y D
Sbjct: 128 SGGLSSVPLTVKEXNRLIDELPAKYRD 154
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGL 86
+L HGF S R A GY P L G G T P ++ + T D+V
Sbjct: 54 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTT--PAEMAASTASDWTADIVAA 111
Query: 87 IDTVAPNDEKVFVVGHDW-GAFMAWFLCLFRPDRVKALVNLSVVFN 131
+ + + +F+ G GA W F P+R ++ ++
Sbjct: 112 MRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAALR 156
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 27 ILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGL 86
+L HGF S R A GY P L G G T P ++ + T D+V
Sbjct: 52 VLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTT--PAEMAASTASDWTADIVAA 109
Query: 87 IDTVAPNDEKVFVVGHDW-GAFMAWFLCLFRPDRVKALVNLSVVFN 131
+ + + +F+ G GA W F P+R ++ ++
Sbjct: 110 MRWLEERCDVLFMTGLSMGGALTVWAAGQF-PERFAGIMPINAALR 154
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDE 95
+WY + L S G++ A DL G P + F + + + P DE
Sbjct: 25 IWYKLK---PLLESAGHKVTAVDLSAAGIN--PRRLDEIHTFRDYSEPLMEVMASIPPDE 79
Query: 96 KVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G P+++ V +S +
Sbjct: 80 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDE 95
+WY + L S G++ A DL G P + F + + + P DE
Sbjct: 25 IWYKLK---PLLESAGHKVTAVDLSAAGIN--PRRLDEIHTFRDYSEPLMEVMASIPPDE 79
Query: 96 KVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G P+++ V +S +
Sbjct: 80 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
>pdb|1XKL|A Chain A, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|B Chain B, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|C Chain C, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
pdb|1XKL|D Chain D, Crystal Structure Of Salicylic Acid-Binding Protein 2
(Sabp2) From Nicotiana Tabacum, Nesg Target Ar2241
Length = 273
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 34/121 (28%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGD 82
+G + +HG +SW L + G++ A DL G T I +
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASG-----------TDLRKIEE 51
Query: 83 LVGLIDTVAPN---------DEKVFVVGHDWGA--------------FMAWFLCLFRPDR 119
L L D P DEKV +VGH G + A FL F PD
Sbjct: 52 LRTLYDYTLPLXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDS 111
Query: 120 V 120
V
Sbjct: 112 V 112
>pdb|1Y7H|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|C Chain C, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|D Chain D, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|E Chain E, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|F Chain F, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|G Chain G, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7H|H Chain H, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|A Chain A, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
pdb|1Y7I|B Chain B, Structural And Biochemical Studies Identify Tobacco Sabp2
As A Methylsalicylate Esterase And Further Implicate It
In Plant Innate Immunity, Northeast Structural Genomics
Target Ar2241
Length = 268
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 42/121 (34%), Gaps = 34/121 (28%)
Query: 23 QGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGD 82
+G + +HG +SW L + G++ A DL G T I +
Sbjct: 3 EGKHFVLVHGACHGGWSWYKLKPLLEAAGHKVTALDLAASG-----------TDLRKIEE 51
Query: 83 LVGLIDTVAPN---------DEKVFVVGHDWGA--------------FMAWFLCLFRPDR 119
L L D P DEKV +VGH G + A FL F PD
Sbjct: 52 LRTLYDYTLPLXELXESLSADEKVILVGHSLGGXNLGLAXEKYPQKIYAAVFLAAFXPDS 111
Query: 120 V 120
V
Sbjct: 112 V 112
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG 63
VI F HG+P W Q+ + G+R VA D RG G
Sbjct: 28 VIHFHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHG 65
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDE 95
+WY + L S G++ A DL G P + F + + + P DE
Sbjct: 25 IWYKLK---PLLESAGHKVTAVDLSAAGIN--PRRLDEIHTFRDYSEPLMEVMASIPPDE 79
Query: 96 KVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G P+++ V +S +
Sbjct: 80 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 36 LWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDE 95
+WY + L S G++ A DL G P + F + + + P DE
Sbjct: 19 IWYKLK---PLLESAGHKVTAVDLSAAGIN--PRRLDEIHTFRDYSEPLMEVMASIPPDE 73
Query: 96 KVFVVGHDWGAFMAWFLCLFRPDRVKALVNLSVVF 130
KV ++GH +G P+++ V +S +
Sbjct: 74 KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 108
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 101 GHDWGAFMAWFLCLFRPDRVKALVN----------LSVVFNPFGSINNVIEALRAYYGDN 150
G+D AF A + RP+ + ALV+ L VV+N FG N + + Y +
Sbjct: 176 GYDGAAFYAPYAPYGRPEDLXALVDAAHRLGLGVFLDVVYNHFGPSGNYLSS----YAPS 231
Query: 151 YYMCRFQ 157
Y+ RF
Sbjct: 232 YFTDRFS 238
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWY 38
VK+NG+ I+ G GP+ F+H ++ +
Sbjct: 520 VKINGVETEISGSGNGPLAAFVHALADVGF 549
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWY 38
VK+NG+ I+ G GP+ F+H ++ +
Sbjct: 518 VKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 14/67 (20%)
Query: 101 GHDWGAFMAWFLCLFRPDRVKALVN----------LSVVFNPFGSINNVIEALRAYYGDN 150
G+D AF A + RP+ + ALV+ L VV+N FG N + + Y +
Sbjct: 176 GYDGAAFYAPYAPYGRPEDLMALVDAAHRLGLGVFLDVVYNHFGPSGNYLSS----YAPS 231
Query: 151 YYMCRFQ 157
Y+ RF
Sbjct: 232 YFTDRFS 238
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 29.6 bits (65), Expect = 0.74, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 9 VKVNGINMHIAEKGQGPVILFLHGFPELWY 38
VK+NG+ I+ G GP+ F+H ++ +
Sbjct: 518 VKINGVETEISGSGNGPLAAFVHALADVGF 547
>pdb|3GT5|A Chain A, Crystal Structure Of An N-Acetylglucosamine 2-Epimerase
Family Protein From Xylella Fastidiosa
Length = 402
Score = 29.6 bits (65), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 29 FLHGFPELW-YSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLI 87
+ + LW Y+W+H + YR + D R + D +P T Y H +G ++
Sbjct: 331 YWQWYDRLWAYAWQHMVDHRYGAWYRLLDGDNRKYNDEKSPAGKTDY---HTMGACHEVL 387
Query: 88 DTVAPNDE 95
+ V E
Sbjct: 388 NVVWTKSE 395
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 23/137 (16%)
Query: 19 AEKGQGPVILFLHGFPELWYSWRHQITAL---ASLGYRAVAPDLRGFGD----------- 64
+E + PV+ +L G ++ + A A LG VAPD GD
Sbjct: 40 SESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFA 99
Query: 65 ---------TDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLF 115
T AP + +V+ +L LI+ P + GH G A + L
Sbjct: 100 QGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPVTSTKAISGHSMGGHGALMIALK 159
Query: 116 RPDRVKALVNLSVVFNP 132
P + S + NP
Sbjct: 160 NPQDYVSASAFSPIVNP 176
>pdb|1IMJ|A Chain A, Crystal Structure Of The Human Ccg1/tafii250-interacting
Factor B (cib)
Length = 210
Score = 29.3 bits (64), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 27 ILFLHGFPELWYSWRH--QITALASLGYRAVAPDLRGFGDTD 66
+L LHG +W++ + LA GYRAVA DL G G +
Sbjct: 35 VLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHSK 76
>pdb|1YS1|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (R)-2-Methyl-3-Phenylpropyl Ester
pdb|1YS2|X Chain X, Burkholderia Cepacia Lipase Complexed With Hexylphosphonic
Acid (s) 2-methyl-3-phenylpropyl Ester
Length = 320
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Query: 27 ILFLHGFP---------ELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCF 77
I+ +HG E WY + + + Y A +L GF D P
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVA---NLSGFQSDDGPNGRGE---- 63
Query: 78 HVIGDLVGLIDTV--APNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
L+ + TV A KV +VGH G + ++ PD V ++ +
Sbjct: 64 ----QLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTI 110
>pdb|1OIL|A Chain A, Structure Of Lipase
pdb|1OIL|B Chain B, Structure Of Lipase
pdb|4LIP|D Chain D, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|4LIP|E Chain E, Pseudomonas Lipase Complexed With Rc-(rp, Sp)-
Dibutylcarbamoylglycero-3-o-butylphosphonate
pdb|1HQD|A Chain A, Pseudomonas Cepacia Lipase Complexed With Transition State
Analogue Of 1-Phenoxy-2-Acetoxy Butane
pdb|2LIP|A Chain A, Pseudomonas Lipase Open Conformation
pdb|3LIP|A Chain A, Open Conformation Of Pseudomonas Cepacia Lipase
pdb|5LIP|A Chain A, Pseudomonas Lipase Complexed With Rc-(Rp, Sp)-1,2-
Dioctylcarbamoylglycero-3-O-Octylphosphonate
pdb|2NW6|A Chain A, Burkholderia Cepacia Lipase Complexed With S-Inhibitor
Length = 320
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 41/111 (36%), Gaps = 22/111 (19%)
Query: 27 ILFLHGFP---------ELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCF 77
I+ +HG E WY + + + Y A +L GF D P
Sbjct: 11 IILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVA---NLSGFQSDDGPNGRGE---- 63
Query: 78 HVIGDLVGLIDTV--APNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNL 126
L+ + TV A KV +VGH G + ++ PD V ++ +
Sbjct: 64 ----QLLAYVKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTI 110
>pdb|3QR3|A Chain A, Crystal Structure Of Cel5a (Eg2) From Hypocrea Jecorina
(Trichoderma Reesei)
pdb|3QR3|B Chain B, Crystal Structure Of Cel5a (Eg2) From Hypocrea Jecorina
(Trichoderma Reesei)
Length = 340
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%)
Query: 43 QITAL-ASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVG 101
Q T+L + L + + FG + P DV T + ++V I + + + G
Sbjct: 124 QFTSLWSQLASKYASQSRVWFGIMNEPHDVNINTWAATVQEVVTAIRNAGATSQFISLPG 183
Query: 102 HDWGAFMAWFLCLFRPDRVKALVNLSVVFNPFGSINNVIEALRAY 146
+DW + A F D A LS V NP GS N+I + Y
Sbjct: 184 NDWQSAGA-----FISDGSAAA--LSQVTNPDGSTTNLIFDVHKY 221
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG-DTDAPPDVTSYT 75
+G+G +L +HG + Q+ +R +APDL G G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG-DTDAPPDVTSYT 75
+G+G +L +HG + Q+ +R +APDL G G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 21 KGQGPVILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFG-DTDAPPDVTSYT 75
+G+G +L +HG + Q+ +R +APDL G G TDA SY+
Sbjct: 21 EGEGAPLLMIHGNSSSGAIFAPQLEGEIGKKWRVIAPDLPGHGKSTDAIDPDRSYS 76
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 17/111 (15%)
Query: 21 KGQGPV-ILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTC 76
KGQG V ++ LHG+ E+W ++++ +L DL GFG + ++
Sbjct: 9 KGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV----DLPGFGRSRGFGALS---- 60
Query: 77 FHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
+ D+ + AP+ K +G G +A + L P+RV+ALV ++
Sbjct: 61 ---LADMAEAVLQQAPD--KAIWLGWALGGLVASQIALTHPERVQALVTVA 106
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 58 DLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRP 117
D+R G + P V +Y DLV +D A +K +GH G L P
Sbjct: 49 DVRNHGLSPREP-VMNYPAM--AQDLVDTLD--AQQIDKATFIGHSMGGKAVMALTALAP 103
Query: 118 DRVKALVNLSV 128
DR+ LV + +
Sbjct: 104 DRIDKLVAIDI 114
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 15 NMHIAEKGQGPV-ILFLHGF---PELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPD 70
N+ KGQG V ++ LHG+ E+W ++++ +L DL GFG +
Sbjct: 3 NIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHLV----DLPGFGRSRGFGA 58
Query: 71 VTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS 127
++ + D + AP+ K +G G +A + L P+RV+ALV ++
Sbjct: 59 LS-------LADXAEAVLQQAPD--KAIWLGWSLGGLVASQIALTHPERVRALVTVA 106
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 58 DLRGFGDTDAPPDVTSYTCFHVIGDLVGLIDTVAPNDEKVFVVGHDWGAFMAWFLCLFRP 117
D+R G + P V +Y DLV +D + +K +GH G L P
Sbjct: 49 DVRNHGLSPREP-VMNYPAM--AQDLVDTLDAL--QIDKATFIGHSMGGKAVMALTALAP 103
Query: 118 DRVKALVNLSV 128
DR+ LV + +
Sbjct: 104 DRIDKLVAIDI 114
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 64 DTDAPPDVTSYTCF-HVIGDLVGLIDTVAPND-EKVFVVGHDWGAFMAWFLCLFRPDRVK 121
D P T+Y + +V +L LI+ P D +++ + GH G A L P + K
Sbjct: 108 DATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYK 167
Query: 122 ALVNLSVVFNP 132
++ + + NP
Sbjct: 168 SVSAFAPICNP 178
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 9 VKVNGINMHIAEKGQGP-VILFLHG-FPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V VNG+ +H + G+G +L L G + Q+ L + VA D RG+G +
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS- 65
Query: 67 APPD 70
PPD
Sbjct: 66 RPPD 69
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed
With A Product Analogue
Length = 254
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 9 VKVNGINMHIAEKGQGP-VILFLHG-FPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V VNG+ +H + G+G +L L G + Q+ L + VA D RG+G +
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS- 65
Query: 67 APPD 70
PPD
Sbjct: 66 RPPD 69
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 9 VKVNGINMHIAEKGQGP-VILFLHG-FPELWYSWRHQITALASLGYRAVAPDLRGFGDTD 66
V VNG+ +H + G+G +L L G + Q+ L + VA D RG+G +
Sbjct: 7 VAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHS- 65
Query: 67 APPD 70
PPD
Sbjct: 66 RPPD 69
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 26 VILFLHGFPELWYSWRHQITALASLGYRAVAPDLRGFGDTDAPPDVTSYTCFHV-IGDLV 84
+I HG E + L L A D G G ++ V S FHV + D++
Sbjct: 62 LIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSEGERMVVSD--FHVFVRDVL 119
Query: 85 GLIDTVAPN--DEKVFVVGHDWGAFMAWFLCLFRPDRVKALVNLS--VVFNP 132
+D++ + VF++GH G +A RP +V +S V+ NP
Sbjct: 120 QHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.144 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,285,457
Number of Sequences: 62578
Number of extensions: 220217
Number of successful extensions: 675
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 151
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)