BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044509
         (323 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
 pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
          Length = 727

 Score = 33.1 bits (74), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 39  ACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLG 98
           A   A L++   ++DP+ + + +D +  A G+ D+KD    D  L KL ID   A   +G
Sbjct: 489 AEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDP---DRNLLKLCIDAGRAMATVG 545


>pdb|1REQ|A Chain A, Methylmalonyl-Coa Mutase
 pdb|1REQ|C Chain C, Methylmalonyl-Coa Mutase
 pdb|2REQ|A Chain A, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
           Open Conformation Representing Substrate-Free State
 pdb|2REQ|C Chain C, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
           Open Conformation Representing Substrate-Free State
 pdb|3REQ|A Chain A, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
           Quality Structure)
 pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|6REQ|C Chain C, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|7REQ|A Chain A, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|7REQ|C Chain C, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
           Complex
 pdb|4REQ|A Chain A, Methylmalonyl-Coa Mutase Substrate Complex
 pdb|4REQ|C Chain C, Methylmalonyl-Coa Mutase Substrate Complex
          Length = 727

 Score = 33.1 bits (74), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 39  ACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLG 98
           A   A L++   ++DP+ + + +D +  A G+ D+KD    D  L KL ID   A   +G
Sbjct: 489 AEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDP---DRNLLKLCIDAGRAMATVG 545


>pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
 pdb|5REQ|C Chain C, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
          Length = 727

 Score = 32.7 bits (73), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 39  ACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLG 98
           A   A L++   ++DP+ + + +D +  A G+ D+KD    D  L KL ID   A   +G
Sbjct: 489 AEQKAKLVKLRAERDPEKVKAALDKITWAAGNPDDKDP---DRNLLKLCIDAGRAMATVG 545


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,913,793
Number of Sequences: 62578
Number of extensions: 280250
Number of successful extensions: 722
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 4
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)