Query 044509
Match_columns 323
No_of_seqs 110 out of 1112
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:54:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.3E-48 2.8E-53 357.2 14.1 320 2-322 53-433 (449)
2 PTZ00206 amino acid transporte 100.0 1.1E-47 2.4E-52 365.1 14.9 317 2-320 66-446 (467)
3 KOG1303 Amino acid transporter 100.0 5.2E-44 1.1E-48 331.9 20.1 305 1-306 43-402 (437)
4 PF01490 Aa_trans: Transmembra 100.0 1E-44 2.2E-49 341.2 6.2 305 2-306 9-375 (409)
5 PLN03074 auxin influx permease 100.0 1.2E-40 2.6E-45 315.8 14.9 317 2-321 52-433 (473)
6 KOG1305 Amino acid transporter 100.0 1.8E-37 3.9E-42 286.9 22.0 302 2-305 12-375 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2.8E-36 6E-41 262.0 10.0 319 2-323 123-499 (524)
8 COG0814 SdaC Amino acid permea 99.9 1.3E-23 2.9E-28 196.8 20.6 305 2-306 15-384 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.3E-17 2.8E-22 155.4 20.1 303 5-313 12-373 (394)
10 TIGR00837 araaP aromatic amino 99.8 1.4E-17 3.1E-22 155.5 19.1 299 2-306 3-360 (381)
11 PRK10483 tryptophan permease; 99.7 1.9E-16 4.1E-21 146.8 19.3 301 5-312 20-380 (414)
12 PRK09664 tryptophan permease T 99.7 4E-16 8.6E-21 144.5 19.8 302 5-312 18-381 (415)
13 PRK15132 tyrosine transporter 99.7 4.6E-16 1E-20 144.6 18.0 296 3-305 10-362 (403)
14 TIGR00814 stp serine transport 99.5 9.9E-13 2.1E-17 122.6 17.7 316 3-323 10-395 (397)
15 PRK13629 threonine/serine tran 99.4 5.7E-12 1.2E-16 117.2 13.4 299 3-303 26-413 (443)
16 TIGR00912 2A0309 spore germina 98.4 2.2E-05 4.7E-10 72.9 17.3 291 4-305 11-354 (359)
17 KOG3832 Predicted amino acid t 98.1 7.3E-06 1.6E-10 67.8 6.9 46 5-50 21-67 (319)
18 PRK11021 putative transporter; 98.1 0.00061 1.3E-08 64.4 20.9 184 5-189 10-231 (410)
19 PRK10655 potE putrescine trans 98.0 0.0013 2.9E-08 62.6 20.0 67 5-72 17-83 (438)
20 TIGR00909 2A0306 amino acid tr 97.9 0.0013 2.9E-08 62.4 19.5 185 5-191 14-251 (429)
21 PRK10197 gamma-aminobutyrate t 97.9 0.0024 5.2E-08 61.1 19.9 66 6-72 4-70 (446)
22 PF13520 AA_permease_2: Amino 97.8 0.0031 6.6E-08 59.8 18.9 190 5-196 10-247 (426)
23 PRK10644 arginine:agmatin anti 97.8 0.0025 5.3E-08 61.0 18.1 67 5-72 19-85 (445)
24 TIGR01773 GABAperm gamma-amino 97.8 0.0067 1.5E-07 58.1 21.0 67 5-72 23-90 (452)
25 PRK10746 putative transport pr 97.7 0.0092 2E-07 57.3 21.3 66 6-72 22-88 (461)
26 PRK10435 cadB lysine/cadaverin 97.7 0.0035 7.5E-08 59.8 18.2 66 5-72 16-81 (435)
27 PRK10249 phenylalanine transpo 97.7 0.011 2.4E-07 56.8 21.2 67 5-72 32-99 (458)
28 TIGR03810 arg_ornith_anti argi 97.7 0.0069 1.5E-07 58.3 19.5 67 5-72 12-81 (468)
29 PF03845 Spore_permease: Spore 97.6 0.0023 4.9E-08 58.4 14.5 238 5-248 11-297 (320)
30 TIGR00905 2A0302 transporter, 97.5 0.008 1.7E-07 57.9 18.1 69 4-72 17-87 (473)
31 TIGR00906 2A0303 cationic amin 97.5 0.033 7.2E-07 54.8 21.7 183 6-189 40-285 (557)
32 TIGR00913 2A0310 amino acid pe 97.4 0.036 7.8E-07 53.5 21.2 67 6-72 14-82 (478)
33 KOG1287 Amino acid transporter 97.4 0.032 7E-07 52.9 19.7 303 2-313 20-393 (479)
34 PRK11049 D-alanine/D-serine/gl 97.4 0.035 7.5E-07 53.5 20.4 67 5-72 31-98 (469)
35 PRK10580 proY putative proline 97.4 0.06 1.3E-06 51.6 21.9 67 5-72 20-87 (457)
36 PRK10238 aromatic amino acid t 97.3 0.065 1.4E-06 51.4 21.5 67 5-72 23-90 (456)
37 PRK11387 S-methylmethionine tr 97.3 0.048 1E-06 52.5 20.6 67 5-72 25-93 (471)
38 PRK15049 L-asparagine permease 97.3 0.038 8.1E-07 53.7 19.7 67 5-72 39-106 (499)
39 PRK10836 lysine transporter; P 97.3 0.076 1.6E-06 51.4 21.7 67 5-72 26-94 (489)
40 TIGR00930 2a30 K-Cl cotranspor 97.1 0.096 2.1E-06 54.7 21.4 66 6-72 89-157 (953)
41 PRK11357 frlA putative fructos 97.0 0.081 1.8E-06 50.5 18.8 64 6-72 20-88 (445)
42 TIGR00911 2A0308 L-type amino 97.0 0.12 2.6E-06 50.2 20.2 66 6-72 54-122 (501)
43 TIGR00908 2A0305 ethanolamine 96.9 0.25 5.4E-06 47.1 21.2 65 7-72 20-85 (442)
44 PRK15238 inner membrane transp 96.4 1 2.2E-05 43.8 21.2 65 6-72 19-84 (496)
45 COG1113 AnsP Gamma-aminobutyra 96.2 0.09 2E-06 49.4 12.1 294 7-304 26-388 (462)
46 COG0531 PotE Amino acid transp 95.4 2.2 4.8E-05 40.6 18.9 66 6-72 25-90 (466)
47 PF00324 AA_permease: Amino ac 93.2 0.23 5.1E-06 47.8 6.6 66 6-72 7-74 (478)
48 COG3949 Uncharacterized membra 92.9 7.2 0.00016 35.4 15.4 68 5-74 12-82 (349)
49 TIGR03813 put_Glu_GABA_T putat 92.8 9.6 0.00021 36.7 21.2 58 13-72 18-76 (474)
50 COG1953 FUI1 Cytosine/uracil/t 91.7 11 0.00023 36.4 15.2 109 185-294 294-406 (497)
51 KOG1286 Amino acid transporter 89.6 23 0.00049 35.0 18.4 295 6-304 42-422 (554)
52 COG0833 LysP Amino acid transp 83.9 45 0.00097 32.6 20.3 296 6-304 56-427 (541)
53 TIGR00910 2A0307_GadC glutamat 83.1 48 0.001 32.3 20.3 59 12-72 20-80 (507)
54 TIGR02358 thia_cytX probable h 74.7 75 0.0016 29.7 19.6 17 58-74 58-74 (386)
55 TIGR00800 ncs1 NCS1 nucleoside 73.7 85 0.0018 29.9 16.0 17 58-74 76-92 (442)
56 COG1457 CodB Purine-cytosine p 72.6 92 0.002 29.8 17.3 110 176-293 236-350 (442)
57 KOG1289 Amino acid transporter 71.4 1.1E+02 0.0023 30.1 19.5 29 275-305 416-444 (550)
58 PF02554 CstA: Carbon starvati 70.7 18 0.00039 33.5 7.1 71 4-76 60-132 (376)
59 TIGR00907 2A0304 amino acid pe 69.5 1.1E+02 0.0024 29.4 22.7 54 17-71 37-91 (482)
60 PF00209 SNF: Sodium:neurotran 62.0 78 0.0017 31.0 10.3 22 101-122 189-210 (523)
61 COG1914 MntH Mn2+ and Fe2+ tra 59.2 53 0.0011 31.2 8.1 56 250-305 323-378 (416)
62 TIGR03428 ureacarb_perm permea 57.6 1.8E+02 0.0039 27.9 21.0 62 10-72 30-92 (475)
63 TIGR00813 sss transporter, SSS 53.8 1.9E+02 0.0042 27.0 18.4 60 11-72 21-80 (407)
64 PF00474 SSF: Sodium:solute sy 53.5 1.9E+02 0.0042 26.9 16.8 59 12-72 25-83 (406)
65 TIGR00796 livcs branched-chain 53.4 2E+02 0.0043 27.0 17.7 61 5-72 4-68 (378)
66 PRK11375 allantoin permease; P 52.6 2.3E+02 0.0049 27.5 16.9 16 58-73 89-104 (484)
67 PRK09442 panF sodium/panthothe 47.2 2.7E+02 0.0059 26.8 18.3 26 45-72 97-122 (483)
68 COG0814 SdaC Amino acid permea 42.6 1.9E+02 0.004 27.5 9.1 89 226-314 284-386 (415)
69 PF02468 PsbN: Photosystem II 41.5 28 0.00061 21.4 2.2 26 173-198 6-31 (43)
70 PRK13183 psbN photosystem II r 39.6 30 0.00064 21.6 2.1 26 173-198 9-34 (46)
71 CHL00020 psbN photosystem II p 36.2 30 0.00065 21.2 1.7 26 173-198 6-31 (43)
72 PF02133 Transp_cyt_pur: Perme 35.3 2.1E+02 0.0045 27.1 8.4 25 47-74 63-87 (440)
73 TIGR00835 agcS amino acid carr 34.4 51 0.0011 31.4 3.9 67 5-72 56-131 (425)
74 PRK15015 carbon starvation pro 31.2 59 0.0013 32.7 3.8 70 4-76 91-163 (701)
75 PF09125 COX2-transmemb: Cytoc 28.3 1E+02 0.0022 18.1 3.0 21 23-43 13-35 (38)
76 COG0733 Na+-dependent transpor 24.7 6.3E+02 0.014 24.3 12.2 59 5-65 18-82 (439)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=357.23 Aligned_cols=320 Identities=19% Similarity=0.262 Sum_probs=276.4
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhC----CCCCCCHHHHHHhhcC--cc---
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKD----PDTITSYIDIVGHAFG--HK--- 71 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~----~~~~~~y~~l~~~~~G--~~--- 71 (323)
..|+.|.++|+|+|++|+||+++||+ |.+...+++.++.|+++++++|.++. +++..+|+|.++.++. ++
T Consensus 53 l~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r 132 (449)
T KOG1304|consen 53 LIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLR 132 (449)
T ss_pred HHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHH
Confidence 46999999999999999999999998 99999999999999999999998763 2335789999987752 22
Q ss_pred -----c------------------cccccccccc-ccc---ccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHH
Q 044509 72 -----D------------------EKDVPHFDLK-LGK---LTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLS 124 (323)
Q Consensus 72 -----~------------------~~l~~~~~~~-~~~---~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 124 (323)
+ +.+|.+.+++ +.+ ...-+.+.++++..+..+|++++|++|.|+.+|.++.+.
T Consensus 133 ~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~ 212 (449)
T KOG1304|consen 133 KYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVF 212 (449)
T ss_pred hhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHH
Confidence 2 1233333332 222 112246789999999999999999999999999999999
Q ss_pred HHHHhhhheeecccccccccCcccCCCCCChhhhhhhheeeccch--------------------hhhHHHHHHHHHHHH
Q 044509 125 SIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH--------------------HVLLLSFVICTITYL 184 (323)
Q Consensus 125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~--------------------~~~~~~~~i~~~~y~ 184 (323)
.+...++++++.+.+.++.++.+...++.+++.++|+.+|||+++ ++++.+|.++.++|.
T Consensus 213 ~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~ 292 (449)
T KOG1304|consen 213 ILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYI 292 (449)
T ss_pred HHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHH
Confidence 999999999999888777788888888999999999999999998 899999999999999
Q ss_pred HHHhHHHhhccccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccC--CCchhhhhHHHHHH
Q 044509 185 TMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYK--DCRSASILIRMSLL 262 (323)
Q Consensus 185 ~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 262 (323)
.+|++||++|||++++.++.|+|+ ++..+.+++++++.+.++||+|++|..|.+|+.+.+|-+ ++++..+.+|..++
T Consensus 293 ~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lV 371 (449)
T KOG1304|consen 293 FLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLV 371 (449)
T ss_pred HHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999 677788999999999999999999999999997665422 25677899999999
Q ss_pred HHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhccccc--ccceeeEEeEEEEEe
Q 044509 263 VSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYR--NWGYELIGILAIMLL 322 (323)
Q Consensus 263 ~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~--~~~~~~~~~~~ii~~ 322 (323)
++++.+|..+||++.+++++||++++.+++++|++++++.+++++ ..+|+++.|.+++++
T Consensus 372 llt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~ 433 (449)
T KOG1304|consen 372 LLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVF 433 (449)
T ss_pred HHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764 456777777655443
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-47 Score=365.12 Aligned_cols=317 Identities=19% Similarity=0.264 Sum_probs=248.8
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc----
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV---- 76 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~---- 76 (323)
+||++|+++|+|+|++|+||+++||+ |++++++++.++.||.++|.+++++.+. ++|+|++++++|++++.+.
T Consensus 66 ~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~g~~~v~~~~ 143 (467)
T PTZ00206 66 AFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPWGSYYVAATR 143 (467)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHHHHHHHHHHH
Confidence 68999999999999999999999999 9999999999999999999999998665 8999999999999883211
Q ss_pred --------------cccccc-cc------c---ccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhh
Q 044509 77 --------------PHFDLK-LG------K---LTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCA 132 (323)
Q Consensus 77 --------------~~~~~~-~~------~---~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v 132 (323)
.....+ .. + ...+.+..+.+++.++++|++++|++++++++|.+|+.++++.++.+
T Consensus 144 ~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~i 223 (467)
T PTZ00206 144 AFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVI 223 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhh
Confidence 110000 00 0 01112333455677889999999999999999999999888877777
Q ss_pred eeeccccccc--ccC-------ccc--CC-CCCChhhhhhhheeeccch-------------------hhhHHHHHHHHH
Q 044509 133 FCVGATKGVG--FHG-------KRR--LF-NLNGIPTTLSLYTFCYGAH-------------------HVLLLSFVICTI 181 (323)
Q Consensus 133 ~~~~~~~~~~--~~~-------~~~--~~-~~~~~~~~~~~~~faf~~~-------------------~~~~~~~~i~~~ 181 (323)
++++..++.+ .++ .+. .. ...+.+.++|+++|||.|| +++..++.++.+
T Consensus 224 vi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~ 303 (467)
T PTZ00206 224 VVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFT 303 (467)
T ss_pred hhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence 6655433211 111 010 11 1235788999999999999 677889999999
Q ss_pred HHHHHHhHHHhhccccchhHhHhcC-CCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-CCCchhhhhHHH
Q 044509 182 TYLTMAVLGYLIYGQNVQSQITLNL-PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASY-KDCRSASILIRM 259 (323)
Q Consensus 182 ~y~~~g~~gy~~fG~~~~~~i~~n~-~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 259 (323)
+|..+|++||++||++++++++.|+ |.++....+++....+.++.+||++.+|+|+.+++....+. +.+++++...+.
T Consensus 304 lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~ 383 (467)
T PTZ00206 304 MYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVV 383 (467)
T ss_pred HHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHH
Confidence 9999999999999999999999999 56666667888888999999999999999999999874432 334556666677
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhc--ccccccceeeEEeEEEE
Q 044509 260 SLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNIS--EVYRNWGYELIGILAIM 320 (323)
Q Consensus 260 ~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~--~~~~~~~~~~~~~~~ii 320 (323)
.+.+++.++|+.+||++.+++++||++++.++|++|+++|++.. +.++.++++++.+++++
T Consensus 384 ~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~ll 446 (467)
T PTZ00206 384 TLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVL 446 (467)
T ss_pred HHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHH
Confidence 77788899999999999999999999999999999999999842 12223444445555444
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-44 Score=331.95 Aligned_cols=305 Identities=30% Similarity=0.507 Sum_probs=257.5
Q ss_pred CccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC----CCCCHHHHHHhhcCcccccc
Q 044509 1 MILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPD----TITSYIDIVGHAFGHKDEKD 75 (323)
Q Consensus 1 ~ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~----~~~~y~~l~~~~~G~~~~~l 75 (323)
.+||.+|.++|.|+|+||+|+++.||+ |+++++..++++.||..+|.+|.+.++. |.++|+|+++++||++++.+
T Consensus 43 a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~~~i 122 (437)
T KOG1303|consen 43 AAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKGRLL 122 (437)
T ss_pred hhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCceEe
Confidence 368999999999999999999999999 8999999999999999999999988654 56779999999999888321
Q ss_pred c------------------cccccc-c---c--cc-cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhh
Q 044509 76 V------------------PHFDLK-L---G--KL-TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTV 130 (323)
Q Consensus 76 ~------------------~~~~~~-~---~--~~-~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 130 (323)
. ...+++ + . +. ..+ .+.|+.+++++.+|++++|+++.+++.|..|.+.......
T Consensus 123 v~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~ 201 (437)
T KOG1303|consen 123 VSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAV 201 (437)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHH
Confidence 1 011111 0 0 11 122 5678999999999999999999999999999988877777
Q ss_pred hheeecccccccccCc-ccCCCCCC--h-hhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhH
Q 044509 131 CAFCVGATKGVGFHGK-RRLFNLNG--I-PTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVL 189 (323)
Q Consensus 131 ~v~~~~~~~~~~~~~~-~~~~~~~~--~-~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~ 189 (323)
+..+.+..++.+.+++ ....+... . ++++|++.|+|++| |++..++.+++.+|+..++.
T Consensus 202 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~vai~ 281 (437)
T KOG1303|consen 202 ILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIVTFLYFPVAII 281 (437)
T ss_pred HHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 7777776665433221 12222222 2 69999999999999 89999999999999999999
Q ss_pred HHhhccccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccC----CCchhhhhHHHHHHHHH
Q 044509 190 GYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYK----DCRSASILIRMSLLVST 265 (323)
Q Consensus 190 gy~~fG~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 265 (323)
||++|||+++|+++.|++++.+....+++++.+|++.+++.+.+|+.+.+|+....+++ +....|...|..+++.+
T Consensus 282 GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~ 361 (437)
T KOG1303|consen 282 GYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVT 361 (437)
T ss_pred hhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHH
Confidence 99999999999999999755677889999999999999999999999999999876544 24458999999999999
Q ss_pred HHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509 266 VVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY 306 (323)
Q Consensus 266 ~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~ 306 (323)
.++|+.+|+|+++.+++||+...++++++|+++|++.+|.+
T Consensus 362 ~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~ 402 (437)
T KOG1303|consen 362 TFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK 402 (437)
T ss_pred HHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999987654
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1e-44 Score=341.23 Aligned_cols=305 Identities=28% Similarity=0.479 Sum_probs=252.6
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC--CCCCCHHHHHHhhcCcccccccc-
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDP--DTITSYIDIVGHAFGHKDEKDVP- 77 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~--~~~~~y~~l~~~~~G~~~~~l~~- 77 (323)
.+|++|+++|+|+|++|++|+++||+ |++++++++.++.||.++|.|++++.+ ++.++|+|++++.+|++++.+..
T Consensus 9 ~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 88 (409)
T PF01490_consen 9 FFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPKGKWFVDI 88 (409)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999 999999999999999999999998742 34699999999999998843211
Q ss_pred -----------------cccc-ccccc----cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheee
Q 044509 78 -----------------HFDL-KLGKL----TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCV 135 (323)
Q Consensus 78 -----------------~~~~-~~~~~----~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~ 135 (323)
.... ++.+. ...++..+..+.+++++|++++|+++++++.|.+|.+++.+....+...
T Consensus 89 ~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~ 168 (409)
T PF01490_consen 89 CIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIY 168 (409)
T ss_pred hheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecce
Confidence 0000 01111 1123556777888999999999999999999999998877742222222
Q ss_pred cccc----cccccCc--ccCCCCCChhhhhhhheeeccch--------------------hhhHHHHHHHHHHHHHHHhH
Q 044509 136 GATK----GVGFHGK--RRLFNLNGIPTTLSLYTFCYGAH--------------------HVLLLSFVICTITYLTMAVL 189 (323)
Q Consensus 136 ~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~--------------------~~~~~~~~i~~~~y~~~g~~ 189 (323)
.... +.+.+++ ....++.+++.++|+++|||.+| |+...++.++.++|..+|..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~ 248 (409)
T PF01490_consen 169 IISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIF 248 (409)
T ss_pred eeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhc
Confidence 2111 1111111 12455678999999999999999 57788999999999999999
Q ss_pred HHhhccccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----------cCCCchhhhhHHH
Q 044509 190 GYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS----------YKDCRSASILIRM 259 (323)
Q Consensus 190 gy~~fG~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 259 (323)
||++||+++++|+++|+|++++...+++.++.++++.+||++.+|.++.+++.+.++ ++.++++|+..|.
T Consensus 249 gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (409)
T PF01490_consen 249 GYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRI 328 (409)
T ss_pred ccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeec
Confidence 999999999999999999988777899999999999999999999999999988642 2224677999999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509 260 SLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY 306 (323)
Q Consensus 260 ~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~ 306 (323)
.++..+.++|..+||++++++++|++++..++|++|+++|++.+|++
T Consensus 329 ~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~ 375 (409)
T PF01490_consen 329 ILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRK 375 (409)
T ss_pred chhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999998876
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.2e-40 Score=315.78 Aligned_cols=317 Identities=14% Similarity=0.177 Sum_probs=245.3
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhh----CCCCC-------CCHHHHHHhhcC
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDK----DPDTI-------TSYIDIVGHAFG 69 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~----~~~~~-------~~y~~l~~~~~G 69 (323)
-+|++|..+|.|+|+||+||+++||+ |++.+++++.++.||.+++.+++++ .+++. .+|.|+++..+|
T Consensus 52 ~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G 131 (473)
T PLN03074 52 WFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLG 131 (473)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcC
Confidence 37899999999999999999999999 9999999999999999999987543 22111 267999999999
Q ss_pred ccccccc----------cc--------cccccccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhh
Q 044509 70 HKDEKDV----------PH--------FDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVC 131 (323)
Q Consensus 70 ~~~~~l~----------~~--------~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~ 131 (323)
|++.... .. .+....+... +++.|+.++..+..|++++|++++++++|.+|+.++++..+.
T Consensus 132 ~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~-~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~ 210 (473)
T PLN03074 132 PYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL-DKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWY 210 (473)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc-CCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9873211 00 0001011122 367888889999999999999999999999998876654333
Q ss_pred heeeccccc--ccccCcccCCCCCChhhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHh
Q 044509 132 AFCVGATKG--VGFHGKRRLFNLNGIPTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYL 192 (323)
Q Consensus 132 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~ 192 (323)
++.....++ ++.++. ...++..++.++++++|+|++| +++..+...+...|+.+|+.||+
T Consensus 211 i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~ 289 (473)
T PLN03074 211 MTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYW 289 (473)
T ss_pred HHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeee
Confidence 333322221 122111 1223445667778899999999 67778888889999999999999
Q ss_pred hccccchh--HhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHHHHHh
Q 044509 193 IYGQNVQS--QITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLAT 270 (323)
Q Consensus 193 ~fG~~~~~--~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 270 (323)
.|||++++ +.+.|+|++++ .++++.+++++.+.+||++.+|+.+.+|+..+.++++....|+.+|..++++++++|+
T Consensus 290 ~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~ 368 (473)
T PLN03074 290 AFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAI 368 (473)
T ss_pred eechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999764 56777987665 4788999999999999999999999998887655333556799999999999999999
Q ss_pred hcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc------------cccc--eeeEEeEEEEE
Q 044509 271 VFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY------------RNWG--YELIGILAIML 321 (323)
Q Consensus 271 ~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~------------~~~~--~~~~~~~~ii~ 321 (323)
.+|+|+.+++++||++++.+++++|+++|++.++++ ..++ |+.+.|+++++
T Consensus 369 ~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv 433 (473)
T PLN03074 369 IFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVV 433 (473)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHH
Confidence 999999999999999999999999999999866442 0223 35688877765
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=286.86 Aligned_cols=302 Identities=21% Similarity=0.331 Sum_probs=253.2
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc---
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP--- 77 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~--- 77 (323)
++|+.|+++|+|++++|+||++.|.+ |++++..++.++.++.+++.+++++.++ ++|++++++.+|+.+.....
T Consensus 12 v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~--~ty~~l~~~~~g~~g~~~~~v~~ 89 (411)
T KOG1305|consen 12 VFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE--RTYSSLGDLIFGKLGKVDAAVAV 89 (411)
T ss_pred HHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC--CCHHHHHHHHcCCCceeeehhhH
Confidence 79999999999999999999999988 9999999999999999999999999998 59999999999998821100
Q ss_pred ---ccc-cc----------------ccccc----ccccch-hHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhh
Q 044509 78 ---HFD-LK----------------LGKLT----IDGRHA-FVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCA 132 (323)
Q Consensus 78 ---~~~-~~----------------~~~~~----~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v 132 (323)
..+ .. ..+.+ +.++.. +++....+..|+++.|+++++++.|.++.+++++.++.+
T Consensus 90 ~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~v 169 (411)
T KOG1305|consen 90 KCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLV 169 (411)
T ss_pred HhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 000 00 00011 222334 577888999999999999999999999999999999888
Q ss_pred eeecccccc----cccCcccCCCCCChhhhhhhheeeccch-------------------hhhHHHHHHHHHHHHHHHhH
Q 044509 133 FCVGATKGV----GFHGKRRLFNLNGIPTTLSLYTFCYGAH-------------------HVLLLSFVICTITYLTMAVL 189 (323)
Q Consensus 133 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~-------------------~~~~~~~~i~~~~y~~~g~~ 189 (323)
+++.+..+. ...+.+...++.+.+.++++++|+|.|| ++...+...+.++|...|.+
T Consensus 170 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~ 249 (411)
T KOG1305|consen 170 VYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLF 249 (411)
T ss_pred HHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888876432 1112222233368999999999999999 67788888899999999999
Q ss_pred HHhhccccchhHhHhcCCCchhH------HHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccC----CCchhhhhHHH
Q 044509 190 GYLIYGQNVQSQITLNLPIEQVS------SKVAIYTILAGPIAKYALTVMSIATAIERQLSASYK----DCRSASILIRM 259 (323)
Q Consensus 190 gy~~fG~~~~~~i~~n~~~~~~~------~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 259 (323)
||+.|||++.+|++.++|+++.. ....+..+.++.+..+|++.+|+|+.+++...+++. +++.++.+++.
T Consensus 250 GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl 329 (411)
T KOG1305|consen 250 GYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITL 329 (411)
T ss_pred hhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHH
Confidence 99999999999999999875432 367889999999999999999999998887765432 35567899999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509 260 SLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEV 305 (323)
Q Consensus 260 ~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~ 305 (323)
.+...+.+.|+.+||++.+++++||++++.++|++|+++|++..|+
T Consensus 330 ~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 330 LLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 9999999999999999999999999999999999999999999885
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-36 Score=262.00 Aligned_cols=319 Identities=21% Similarity=0.361 Sum_probs=265.4
Q ss_pred ccccchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC------CCCCHHHHHHhhcCccc--c
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPD------TITSYIDIVGHAFGHKD--E 73 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~------~~~~y~~l~~~~~G~~~--~ 73 (323)
..|..|++-|.=+++||+|..-.||.++..++.++..+.||..+|++|..+.++ .+++|.+++..+++++- +
T Consensus 123 aWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr 202 (524)
T KOG4303|consen 123 AWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGR 202 (524)
T ss_pred hhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchh
Confidence 369999999999999999999999999999999999999999999999987542 46799999999987753 1
Q ss_pred -----ccc---ccccc------c-----cccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhhee
Q 044509 74 -----KDV---PHFDL------K-----LGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFC 134 (323)
Q Consensus 74 -----~l~---~~~~~------~-----~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~ 134 (323)
++. ....+ + +.+... +++-|+++.....+|.+++|++|..+..|.+.+.+-+..-++++.
T Consensus 203 ~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv-d~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~ 281 (524)
T KOG4303|consen 203 WVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV-DKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVL 281 (524)
T ss_pred eeeHHHHHHHHHHHHhhhheechhhhccCCCCCc-cccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 00000 0 111223 367899999999999999999999999999999888877777776
Q ss_pred eccc--ccccccCcccCCCCCChhhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHhhcc
Q 044509 135 VGAT--KGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYG 195 (323)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~~fG 195 (323)
++.. .+++|+......|...++-++|.++|+|..| -.+.++-....++-..+|..||++||
T Consensus 282 YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~ 361 (524)
T KOG4303|consen 282 YCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFG 361 (524)
T ss_pred HHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHHHHHHHHHHheeeeec
Confidence 6643 3566766666678889999999999999999 56889999999999999999999999
Q ss_pred ccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-C---------CC--chhhhhHHHHHHH
Q 044509 196 QNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASY-K---------DC--RSASILIRMSLLV 263 (323)
Q Consensus 196 ~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~---------~~--~~~~~~~~~~~~~ 263 (323)
+.+++.+++|+|+..+. .+++++.++..+.|||+.++...+.+|+-+.... + ++ +-+.+.+|..+++
T Consensus 362 ~~TqevItnnLp~qsfk-~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvv 440 (524)
T KOG4303|consen 362 ELTQEVITNNLPNQSFK-ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVV 440 (524)
T ss_pred hhhHHHHhcCCCccchh-hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHH
Confidence 99999999999997665 6778999999999999999999999988765321 1 12 2335678999999
Q ss_pred HHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceeeEEeEEEEEeC
Q 044509 264 STVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323 (323)
Q Consensus 264 ~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~ii~~~ 323 (323)
.+.+.|+.+|++..+++++|+++++.++|+.|+++|++++++. ....|+..+..+++++
T Consensus 441 fTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G 499 (524)
T KOG4303|consen 441 FTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMG 499 (524)
T ss_pred HHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEe
Confidence 9999999999999999999999999999999999999998776 6667777777777664
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.92 E-value=1.3e-23 Score=196.78 Aligned_cols=305 Identities=14% Similarity=0.138 Sum_probs=223.1
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc---
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP--- 77 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~--- 77 (323)
+.|+.++++|+|+|++|++++..|+. +++++++.+.++.++.+++.|+.++.+++..++.|++++.+||+++.+..
T Consensus 15 vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~ 94 (415)
T COG0814 15 VLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSY 94 (415)
T ss_pred HHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHH
Confidence 57899999999999999999999988 99999999999999999999999999883359999999999999843210
Q ss_pred ---------------cccc-cc----ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecc
Q 044509 78 ---------------HFDL-KL----GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGA 137 (323)
Q Consensus 78 ---------------~~~~-~~----~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~ 137 (323)
.... +. .+.+..+|+...++...++.++++.++...++..+.+....+.+.++.+.+...
T Consensus 95 ~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~ 174 (415)
T COG0814 95 FFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIP 174 (415)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0000 00 111102366777788888888999999999999999998888777766665554
Q ss_pred cccccc-cCccc--CCCCCChhhhhhhheeeccch-------------------hhhHHHHHHHHHHHHHHHhHHHhhcc
Q 044509 138 TKGVGF-HGKRR--LFNLNGIPTTLSLYTFCYGAH-------------------HVLLLSFVICTITYLTMAVLGYLIYG 195 (323)
Q Consensus 138 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~faf~~~-------------------~~~~~~~~i~~~~y~~~g~~gy~~fG 195 (323)
..+++. +..+. ..++..+..++|.++|||+|| |+...+..+..+.|...+.++|..+|
T Consensus 175 ~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~ 254 (415)
T COG0814 175 HWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG 254 (415)
T ss_pred ccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 322211 11111 356778899999999999999 67777888889999999999999999
Q ss_pred ccchhHhHhcCCCchhHH-------------HHHHHHHHHHHhhhhccchhHHHHHHHHhccc-ccCC---Cc--hhhhh
Q 044509 196 QNVQSQITLNLPIEQVSS-------------KVAIYTILAGPIAKYALTVMSIATAIERQLSA-SYKD---CR--SASIL 256 (323)
Q Consensus 196 ~~~~~~i~~n~~~~~~~~-------------~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~-~~~~---~~--~~~~~ 256 (323)
+.+.++++++.++++... ...+..-.+.+..||--+....+|..++.+.+ +.++ +. .....
T Consensus 255 ~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 334 (415)
T COG0814 255 SLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLP 334 (415)
T ss_pred cccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHH
Confidence 999999999998764321 22233333333444333334444555555543 1111 11 12334
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509 257 IRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY 306 (323)
Q Consensus 257 ~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~ 306 (323)
............+...|..+.+.+.+|+.....+.++.|...+.+....+
T Consensus 335 ~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~ 384 (415)
T COG0814 335 PLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK 384 (415)
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence 44555666777888889999999999999999999999998887765443
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.79 E-value=1.3e-17 Score=155.43 Aligned_cols=303 Identities=16% Similarity=0.194 Sum_probs=205.2
Q ss_pred cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc------
Q 044509 5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP------ 77 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~------ 77 (323)
+..+++|+|+|+||.+.+..|.. +.+++++++..+.+|..++.|+..+.++ ..++.+++++.+||+++.+..
T Consensus 12 i~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~g~~~~~~~~~~~ 90 (394)
T PF03222_consen 12 IAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKKGGIVIGISYLFL 90 (394)
T ss_pred HHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence 56799999999999999999988 9999999999999999999999988876 689999999999998842110
Q ss_pred ---------ccc---c-ccc----cccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccc-
Q 044509 78 ---------HFD---L-KLG----KLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATK- 139 (323)
Q Consensus 78 ---------~~~---~-~~~----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~- 139 (323)
... . +.. +.+.+ ++.-.++..++...+... .-+...+.+..-+...+..++......+.+
T Consensus 91 ~y~ll~AYisg~g~~~~~~l~~~~~~~~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~ 168 (394)
T PF03222_consen 91 LYALLVAYISGGGSILSSLLGNQLGTDLS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHW 168 (394)
T ss_pred HHHHHHHHHHccHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 000 0 011 11122 222222233332222222 233445555444433333333333333211
Q ss_pred ccc--ccCcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHH--hHH-------
Q 044509 140 GVG--FHGKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMA--VLG------- 190 (323)
Q Consensus 140 ~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g--~~g------- 190 (323)
+.+ .+.++...++...+.+++..++||+.| |++..+..+..++|+..- ..|
T Consensus 169 ~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~ 248 (394)
T PF03222_consen 169 NPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQF 248 (394)
T ss_pred CHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 111 111223467788889999999999998 777888888888887643 333
Q ss_pred --Hhhccccchh--HhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHH
Q 044509 191 --YLIYGQNVQS--QITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266 (323)
Q Consensus 191 --y~~fG~~~~~--~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
-..-+++.++ ..+.+..++++...+...+-.+.+.+||--.....+|.+++.++.++ +...|........+.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~--~~~~r~~~~~ltf~ppl 326 (394)
T PF03222_consen 249 AEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN--NSSGRLKTWLLTFLPPL 326 (394)
T ss_pred HHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cccchHHHHHHHHHhHH
Confidence 1122222221 23344444556667778888889999999999999999999987633 33455556667778899
Q ss_pred HHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceee
Q 044509 267 VLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYEL 313 (323)
Q Consensus 267 ~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~ 313 (323)
++|...|| +...+++.| .....+..++|+++.+|.+|++++.+++.
T Consensus 327 ~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~ 373 (394)
T PF03222_consen 327 IFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRV 373 (394)
T ss_pred HHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEE
Confidence 99999997 789999999 99999999999999999987764445553
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.78 E-value=1.4e-17 Score=155.46 Aligned_cols=299 Identities=12% Similarity=0.093 Sum_probs=204.6
Q ss_pred ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc---
Q 044509 2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP--- 77 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~--- 77 (323)
+...+++++|+|++++|.++++.|+. +.+.+++.+..+.++...+.|+.++.|+ ..++.|.+++.+||++..+..
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHH
Confidence 45678999999999999999999988 8888999999999999999999988875 579999999999998732210
Q ss_pred ---------------cccc-ccc----cccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecc
Q 044509 78 ---------------HFDL-KLG----KLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGA 137 (323)
Q Consensus 78 ---------------~~~~-~~~----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~ 137 (323)
.... ++. +...+ ++...++...++.++. .+..+..++++.+.+...+..++.++....
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~ 159 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGFPWS-ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLL 159 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 011 11111 2223333333444443 457788888887776665555444333332
Q ss_pred cc-cc-cccCcc-cCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhccc
Q 044509 138 TK-GV-GFHGKR-RLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYGQ 196 (323)
Q Consensus 138 ~~-~~-~~~~~~-~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG~ 196 (323)
.+ +. ...+.. ...++.+...+++...++|++| |+...+..++.++|+..........+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~ 239 (381)
T TIGR00837 160 PHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPR 239 (381)
T ss_pred hhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 21 11 111100 1124456777888888888776 788889999999999876655544443
Q ss_pred cchhHhH-------------hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHH
Q 044509 197 NVQSQIT-------------LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLV 263 (323)
Q Consensus 197 ~~~~~i~-------------~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
+.-++.. .+.-++++...+......+.+..++.-...+.+|..++.++++++ +.+|.....+..+
T Consensus 240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~~~~~~~~~~ 317 (381)
T TIGR00837 240 SEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKGRFKTGLLTFL 317 (381)
T ss_pred HHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCchhhhhhHH
Confidence 2211111 111112234456667777888899999999999998888876443 2235666777788
Q ss_pred HHHHHHhhcCchh-HHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509 264 STVVLATVFPSFQ-SVTSLIGAFLKVVVSFLLPCVSYLNISEVY 306 (323)
Q Consensus 264 ~~~~~A~~vp~~~-~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~ 306 (323)
.+.++|...|+.. ..++..| +..+.+.+++|++++++.+|++
T Consensus 318 ~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 318 PPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred hHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999866 8999999 8899999999999999987653
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.74 E-value=1.9e-16 Score=146.76 Aligned_cols=301 Identities=12% Similarity=0.070 Sum_probs=203.1
Q ss_pred cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------c-
Q 044509 5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------V- 76 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~- 76 (323)
+..|++|+|+|++|.+-++.|+. +++++++++....||..++.|+..+.++ ..++.+++++.+||+++.+ |
T Consensus 20 IaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~LG~~g~~i~~~s~lfl 98 (414)
T PRK10483 20 IGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLLGKGWNVVNGISIAFV 98 (414)
T ss_pred HHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 56789999999999999999999 9999999999999999999999988765 6899999999999988321 0
Q ss_pred --------cccc---c-c-c--ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccccc
Q 044509 77 --------PHFD---L-K-L--GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGV 141 (323)
Q Consensus 77 --------~~~~---~-~-~--~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~ 141 (323)
.+.. . + + .+.+.+ ++.-.++++++.-.+... ..+...+.+..=+...+..++..+.....+ .
T Consensus 99 ~Y~Ll~AYisg~g~il~~~l~~~~~~i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~-i 175 (414)
T PRK10483 99 LYILTYAYISASGSILHHTFAEMSLNVP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAKVITFFLTFGSLLGH-V 175 (414)
T ss_pred HHHHHHHHHhCcHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence 0000 0 0 0 111222 223333444444444443 446666666554444444443333222211 1
Q ss_pred cc----cCc-ccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhh-----
Q 044509 142 GF----HGK-RRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLI----- 193 (323)
Q Consensus 142 ~~----~~~-~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~----- 193 (323)
+. +.+ ....++.....+.+.+++||+.| |++..+..+..++|+..=......
T Consensus 176 ~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~ 255 (414)
T PRK10483 176 QPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPE 255 (414)
T ss_pred CHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 11 111 11122345778999999999999 788888899999998733222221
Q ss_pred ------ccccchh--HhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHH
Q 044509 194 ------YGQNVQS--QITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVST 265 (323)
Q Consensus 194 ------fG~~~~~--~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (323)
-|++.+. +.+.+..+++....+..++..+.+.+||--.....+|.+++.++.+++ +..|...-....+.+
T Consensus 256 ~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~--~~~r~~~~~ltflPP 333 (414)
T PRK10483 256 FIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS--AMGRFKTALLTFLPP 333 (414)
T ss_pred HHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHhhH
Confidence 2333321 112222334455566778888899999999999999999999876543 334555666788899
Q ss_pred HHHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhccccccccee
Q 044509 266 VVLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYE 312 (323)
Q Consensus 266 ~~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~ 312 (323)
.++|...|| |-..++..|.. ...+.-++|+++.++.+|++..+.|+
T Consensus 334 l~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~ 380 (414)
T PRK10483 334 VVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFR 380 (414)
T ss_pred HHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 999999998 88999999976 66788899999999998763234454
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.73 E-value=4e-16 Score=144.49 Aligned_cols=302 Identities=13% Similarity=0.137 Sum_probs=200.2
Q ss_pred cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------c-
Q 044509 5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------V- 76 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~- 76 (323)
+..|++|+|+|++|.+-++.|+. +++++++++..+.||..++.|+..+.++ ..++.+++++.+||+++.+ |
T Consensus 18 IaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i~~~~~~fl 96 (415)
T PRK09664 18 IAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNIISGITVAFV 96 (415)
T ss_pred hhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 56799999999999999999999 9999999999999999999999988876 6899999999999988321 0
Q ss_pred --------ccc-c--c-cc----ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccc-
Q 044509 77 --------PHF-D--L-KL----GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATK- 139 (323)
Q Consensus 77 --------~~~-~--~-~~----~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~- 139 (323)
.+. + . +. .+.+.+ ++.-.++++++.-++... ..+...+.+..=+...+..++..+.....+
T Consensus 97 ~Y~Ll~AYisggG~il~~~l~~~~~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i 174 (415)
T PRK09664 97 LYILTYAYISANGAIISETISMNLGYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKIISFVIVFGSFFFQV 174 (415)
T ss_pred HHHHHHHHHhccHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 000 0 0 01 111222 223334445555555444 346666666544433333333322222111
Q ss_pred ccc-ccCcccCC----CCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHH--HHhHH----
Q 044509 140 GVG-FHGKRRLF----NLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLT--MAVLG---- 190 (323)
Q Consensus 140 ~~~-~~~~~~~~----~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~--~g~~g---- 190 (323)
+++ ..+.+... .+.....+++.+.+||+.| |++..+..+..++|+. ....|
T Consensus 175 ~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~ 254 (415)
T PRK09664 175 DYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPR 254 (415)
T ss_pred cHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 111 11111111 0224677899999999999 6677777777777753 22222
Q ss_pred -----HhhccccchhHhH--hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHH
Q 044509 191 -----YLIYGQNVQSQIT--LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLV 263 (323)
Q Consensus 191 -----y~~fG~~~~~~i~--~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (323)
-..-|+++++-+. .+-.++++...+..++..+.+.+||--.....+|.+.+.++.+++ +..|...-.+.++
T Consensus 255 ~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~~~r~~~~~ltfl 332 (415)
T PRK09664 255 ESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--HGGRFKTVLLTFL 332 (415)
T ss_pred HHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHh
Confidence 1233444433212 111334455667778888899999999999999999999876543 3346666667888
Q ss_pred HHHHHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhccccccccee
Q 044509 264 STVVLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYE 312 (323)
Q Consensus 264 ~~~~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~ 312 (323)
.+.++|...|| |-..++..|.. .+.+.-++|+++-+|.+|++....++
T Consensus 333 PPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~ 381 (415)
T PRK09664 333 PPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFT 381 (415)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCce
Confidence 99999999998 88999999986 66789999999999998763234444
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.71 E-value=4.6e-16 Score=144.61 Aligned_cols=296 Identities=13% Similarity=0.131 Sum_probs=194.4
Q ss_pred cccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc-----
Q 044509 3 LTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV----- 76 (323)
Q Consensus 3 fnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~----- 76 (323)
+-+..|++|+|+|+||.+.+..|.. +.+++++++.+..|+.+.+.|+..+.++ ..++.+++++.+||++..+.
T Consensus 10 ~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~i~~~~y~ 88 (403)
T PRK15132 10 FIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQWLTGFSMM 88 (403)
T ss_pred HHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHHHHHHHHH
Confidence 4567899999999999999999988 9999999999899999999998777654 58999999999999883211
Q ss_pred ----c------cc--c-c-----ccccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccc
Q 044509 77 ----P------HF--D-L-----KLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGAT 138 (323)
Q Consensus 77 ----~------~~--~-~-----~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~ 138 (323)
+ .. + . ++.+.+.+.. ...+.+.++....... ..+...+.+..=+...+..++.......
T Consensus 89 fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~-~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~~~~~~~l~- 165 (403)
T PRK15132 89 FLMYALTAAYISGAGELLASSISDWTGISMSPT-AGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFLVVMLALMM- 165 (403)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhccCCCChH-HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 0 00 0 0 0112222322 2222222222222222 3344555554433333332222222221
Q ss_pred ccccccCcc-cCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhccccc-
Q 044509 139 KGVGFHGKR-RLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYGQNV- 198 (323)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG~~~- 198 (323)
.+.+.+... ...+......+++.+.+||+.| |++..+..+..++|+..=......-+.+.
T Consensus 166 p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~ 245 (403)
T PRK15132 166 PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTF 245 (403)
T ss_pred HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 111111110 0112234889999999999999 78888888888888865544443333221
Q ss_pred ----hh-----HhHhc---CCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHH
Q 044509 199 ----QS-----QITLN---LPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266 (323)
Q Consensus 199 ----~~-----~i~~n---~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (323)
++ +.+.. ..++++...+......+.+.+||--.....+|.+++.++++++ +..|.....+..+.+.
T Consensus 246 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~~~l~flppl 323 (403)
T PRK15132 246 MGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQTGLITFLPPL 323 (403)
T ss_pred HHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchhehhhHHHHH
Confidence 11 12222 2234455567778888899999999999999999998865433 3346667778889999
Q ss_pred HHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509 267 VLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEV 305 (323)
Q Consensus 267 ~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~ 305 (323)
++|...|| +....++.|. ..+.+.+++|+++.+|.+|+
T Consensus 324 i~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 324 AFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred HHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence 99999998 7889999886 57889999999999998764
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.51 E-value=9.9e-13 Score=122.62 Aligned_cols=316 Identities=12% Similarity=0.086 Sum_probs=196.9
Q ss_pred cccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc----
Q 044509 3 LTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP---- 77 (323)
Q Consensus 3 fnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~---- 77 (323)
+.+..+++|+|+|++|...++.||. .++..++...+++++..++.|.....+++..++.|++++.+||++..+..
T Consensus 10 ~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~ 89 (397)
T TIGR00814 10 LGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYF 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHH
Confidence 5678899999999999999999999 67777778888889989899985554433589999999999998732110
Q ss_pred -----------ccccc----c----ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccc
Q 044509 78 -----------HFDLK----L----GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGAT 138 (323)
Q Consensus 78 -----------~~~~~----~----~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~ 138 (323)
....+ + ...+.+ .+....+..++..-....+..+.+.+++.+-+...+...+........
T Consensus 90 ~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip 168 (397)
T TIGR00814 90 FAIYPILLIYSVAITNDSASFLVNQLGTAPP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIP 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 111111 222222222222223334466666676665554433333333333322
Q ss_pred cccccc---Cccc-CCCCCChhhhhhhheeeccch-------------------------hhhHHHHHHHHHHHHHHHhH
Q 044509 139 KGVGFH---GKRR-LFNLNGIPTTLSLYTFCYGAH-------------------------HVLLLSFVICTITYLTMAVL 189 (323)
Q Consensus 139 ~~~~~~---~~~~-~~~~~~~~~~~~~~~faf~~~-------------------------~~~~~~~~i~~~~y~~~g~~ 189 (323)
+ .+.+ ..|. ...+.++..+.+...+||.+| |+...+..+..++|+..-..
T Consensus 169 ~-~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s 247 (397)
T TIGR00814 169 H-WNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFS 247 (397)
T ss_pred H-cCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111 1111 112356788889999999887 34566677777777776666
Q ss_pred HHhhccccchh-----H--hHh---cCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcc----ccc--CCCchh
Q 044509 190 GYLIYGQNVQS-----Q--ITL---NLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLS----ASY--KDCRSA 253 (323)
Q Consensus 190 gy~~fG~~~~~-----~--i~~---n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~----~~~--~~~~~~ 253 (323)
+-...+++.-. | .+. |-.++++...+....-.+.+..||--+....+|.+++.+. .++ .+++..
T Consensus 248 ~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~ 327 (397)
T TIGR00814 248 CVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKL 327 (397)
T ss_pred HhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHH
Confidence 65555543211 1 111 1123344455666667778889999999999998888772 111 123344
Q ss_pred hhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceee-EEeEEEEEeC
Q 044509 254 SILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYEL-IGILAIMLLA 323 (323)
Q Consensus 254 ~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~-~~~~~ii~~~ 323 (323)
+.....+.++.+...|..=|++-.+++-+|+-....+.|++|...-.|.. ...++|. ..+++++++|
T Consensus 328 ~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~---~l~~~~~~~~~~fv~~~g 395 (397)
T TIGR00814 328 NRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP---ALKKYRGRISNVFVTVIG 395 (397)
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH---HHHHhCCCcchheeEeee
Confidence 56677777888899999999999999977777777889999997766653 2333433 4466666543
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.38 E-value=5.7e-12 Score=117.20 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=187.5
Q ss_pred cccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc-----
Q 044509 3 LTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV----- 76 (323)
Q Consensus 3 fnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~----- 76 (323)
..+..+.+|+|+|+||......|.. .++++++++.+++|+...+.|...+.+++..++.|++++.+||++..+.
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 4567899999999999999999977 9999999999999999999998877633368999999999999883211
Q ss_pred ----c----------cccccc----ccc-cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecc
Q 044509 77 ----P----------HFDLKL----GKL-TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGA 137 (323)
Q Consensus 77 ----~----------~~~~~~----~~~-~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~ 137 (323)
+ +...+. .+. ..+ +....++...++...... .-+.+.+++..=+...+..++....+.+
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~-r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~~Li 183 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFWENQLGFAPLN-RGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISLSLI 183 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCcc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 111 122 333333333333333332 3355555554433333333333333332
Q ss_pred cc--cccccCcc-----cCCCC---CChhhhhhhheeeccch----------------------------hhhHHHHHHH
Q 044509 138 TK--GVGFHGKR-----RLFNL---NGIPTTLSLYTFCYGAH----------------------------HVLLLSFVIC 179 (323)
Q Consensus 138 ~~--~~~~~~~~-----~~~~~---~~~~~~~~~~~faf~~~----------------------------~~~~~~~~i~ 179 (323)
.+ .....+.+ ...+. .....+++..++||+-| |++..+..+.
T Consensus 184 P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~ 263 (443)
T PRK13629 184 PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLM 263 (443)
T ss_pred HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence 11 00011111 00011 13566778888887766 4566777777
Q ss_pred HHHHHHHHhHHHhhccccc-----hhHh--H----hcCCCc--------hhHHHHHHHHHHHHHhhhhccchhHHHHHHH
Q 044509 180 TITYLTMAVLGYLIYGQNV-----QSQI--T----LNLPIE--------QVSSKVAIYTILAGPIAKYALTVMSIATAIE 240 (323)
Q Consensus 180 ~~~y~~~g~~gy~~fG~~~-----~~~i--~----~n~~~~--------~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~ 240 (323)
.++|+..-+.+-..-+++. ++|. + +.+++. +....+..+...+.+..||--+....+|.++
T Consensus 264 lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~ 343 (443)
T PRK13629 264 VAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLN 343 (443)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888776665555444322 1111 1 112221 3445566666777889999999999999887
Q ss_pred Hhccc----ccC---CCchhhhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhc
Q 044509 241 RQLSA----SYK---DCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNIS 303 (323)
Q Consensus 241 ~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~ 303 (323)
....+ +++ +++..+.....++++.+...|..=|++-.+++-+|+-....+.|++|....+|..
T Consensus 344 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp 413 (443)
T PRK13629 344 GLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP 413 (443)
T ss_pred HHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH
Confidence 77631 111 2334466777788888999999999999999977777788899999998777764
No 16
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=98.40 E-value=2.2e-05 Score=72.85 Aligned_cols=291 Identities=12% Similarity=0.177 Sum_probs=153.3
Q ss_pred ccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc-----
Q 044509 4 TGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP----- 77 (323)
Q Consensus 4 nl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~----- 77 (323)
-++.+++|+|++.+|....+.+-- +.+..++.+.........+.+..++.|+ ++..|..++.+||+...++.
T Consensus 11 l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~Gk~~g~~~~~~~~~ 88 (359)
T TIGR00912 11 LISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE--KNFSEILSKYLGKILGRLLSILFIL 88 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhhHHHHHHHHHHHHH
Confidence 356789999999999987664433 5555566777777778888888888887 68999999999997632211
Q ss_pred -----c-ccc----cccc-ccccccchhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHh-hhheeeccccccccc
Q 044509 78 -----H-FDL----KLGK-LTIDGRHAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT-VCAFCVGATKGVGFH 144 (323)
Q Consensus 78 -----~-~~~----~~~~-~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~-~~v~~~~~~~~~~~~ 144 (323)
. ... +... ...++...+.. +..++..-....+.++...+++.+-+...+... +.+......+ .+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~-~~~~ 167 (359)
T TIGR00912 89 YFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKL-GNIK 167 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHH
Confidence 0 000 0000 01111222322 222222223344577777777766554443331 2222212111 1111
Q ss_pred C--cccCCCCCChhhhhh-hheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHhhccccchhHh--
Q 044509 145 G--KRRLFNLNGIPTTLS-LYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQI-- 202 (323)
Q Consensus 145 ~--~~~~~~~~~~~~~~~-~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~~fG~~~~~~i-- 202 (323)
. |-...++.+...+.- ...++|.+. |....+..++..+|...-...-..+|.+..++.
T Consensus 168 ~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~ 247 (359)
T TIGR00912 168 NLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYW 247 (359)
T ss_pred HccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcc
Confidence 1 111233444333332 555666543 788888888889999888777777775432221
Q ss_pred -----HhcCCCchhHH---HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHHHHHhhcCc
Q 044509 203 -----TLNLPIEQVSS---KVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPS 274 (323)
Q Consensus 203 -----~~n~~~~~~~~---~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~vp~ 274 (323)
.+...-++... .+.-..-......+..+..+...+.+++.++.++. + ..+..... +.+.++. .||
T Consensus 248 P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~--~~~~~~~-~~~ 320 (359)
T TIGR00912 248 PTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY--S--ILILPVLM--VIFSISF-FPD 320 (359)
T ss_pred cHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c--hhHHHHHH--HHHHHHH-ccc
Confidence 11111111211 11112233455666666777777888888765442 1 12222222 2333333 444
Q ss_pred -hhH---HHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509 275 -FQS---VTSLIGAFLKVVVSFLLPCVSYLNISEV 305 (323)
Q Consensus 275 -~~~---v~~lvGa~~~~~l~~i~P~l~~l~~~~~ 305 (323)
.+. ..+..+ ..+....+++|.++.+...-+
T Consensus 321 ~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 321 SSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 332 112222 334456778999877766533
No 17
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.13 E-value=7.3e-06 Score=67.78 Aligned_cols=46 Identities=28% Similarity=0.572 Sum_probs=42.1
Q ss_pred cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 044509 5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCM 50 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~ 50 (323)
+.|.++|+|.|++|.+|+..||+ ++.++.+.+.+++.+....+++.
T Consensus 21 mfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfvieal 67 (319)
T KOG3832|consen 21 MFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEAL 67 (319)
T ss_pred hhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999 99999999999999998888764
No 18
>PRK11021 putative transporter; Provisional
Probab=98.13 E-value=0.00061 Score=64.39 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=97.5
Q ss_pred cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccc------cc-
Q 044509 5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEK------DV- 76 (323)
Q Consensus 5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~------l~- 76 (323)
.+++++|+|++.+|. +.++.|-..+...++.+.........+.|...+.|+ .-...+-+++.+|++... +.
T Consensus 10 ~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf~~gw~~~~~ 88 (410)
T PRK11021 10 LSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGRVTGWLFLSV 88 (410)
T ss_pred HHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHHHHHHHHHHH
Confidence 468899999999994 555556435666677777777777778888887776 446666778889987621 00
Q ss_pred -----ccc---ccccccc--cccccchhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccccccccC
Q 044509 77 -----PHF---DLKLGKL--TIDGRHAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHG 145 (323)
Q Consensus 77 -----~~~---~~~~~~~--~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (323)
+.. ..+.... ..+....+.. +.....+-..-.+..+..++++....+..+............+..+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 168 (410)
T PRK11021 89 IPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAGDIKPADIPF 168 (410)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcCCC
Confidence 000 0000000 0111111111 1111112222334555555544432222111111111111111111111
Q ss_pred c-ccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhH
Q 044509 146 K-RRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVL 189 (323)
Q Consensus 146 ~-~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~ 189 (323)
+ ....++.++..++....|+|.+. |++..+..++.++|+.....
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 169 PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 1 11234566778888889999876 88888888899999987654
No 19
>PRK10655 potE putrescine transporter; Provisional
Probab=97.96 E-value=0.0013 Score=62.61 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=50.6
Q ss_pred cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++.+|...++.|-.+++..++.+.+......-+.|...+.|+ .-...+-.++.+|+..
T Consensus 17 ~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 17 TAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFGKSG 83 (438)
T ss_pred HHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcCcch
Confidence 468899999999999898888656666777777777777777777766655 3455666678899865
No 20
>TIGR00909 2A0306 amino acid transporter.
Probab=97.94 E-value=0.0013 Score=62.42 Aligned_cols=185 Identities=17% Similarity=0.144 Sum_probs=99.6
Q ss_pred cchhcccccccchhHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------cc
Q 044509 5 GFILTPGIDILSIPYALS-SGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------VP 77 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~-~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~~ 77 (323)
.+++++|+|++.+|.... ..|....+..++.+.........+.|..++.|+ .-...+-.++.+||+...+ +.
T Consensus 14 ~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~~~g~~~gw~~~~~ 92 (429)
T TIGR00909 14 GIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGELTAFIIGWSLWLE 92 (429)
T ss_pred HHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCcHHHHHHHHHHHHH
Confidence 357789999999996544 344434445566666776777778888877765 3355566677888865210 00
Q ss_pred -----c-------cccc-ccc---cccccc--------ch--hHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhh
Q 044509 78 -----H-------FDLK-LGK---LTIDGR--------HA--FVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVC 131 (323)
Q Consensus 78 -----~-------~~~~-~~~---~~~~~~--------~~--~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~ 131 (323)
. ...+ +.+ .+.+.. .. +..+...+..-....+..+..++++.+.....+...+.
T Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~ 172 (429)
T TIGR00909 93 YGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLL 172 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 000 111100 00 11122222223334456777777776655544443332
Q ss_pred heeeccc--ccccccCcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHH
Q 044509 132 AFCVGAT--KGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGY 191 (323)
Q Consensus 132 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy 191 (323)
++..... +..++++. ...++.++..++....++|.+. |++..+..++.++|........
T Consensus 173 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 173 FAALGAIHFASNNYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred hhhHHHhhCcHHhcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222221 11122111 1224456677778888888765 7888888899999998775443
No 21
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.87 E-value=0.0024 Score=61.08 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=54.9
Q ss_pred chhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+.+++|+|++-.|. +.++.|...++..++.+.+.......+.|...+.|+ .-...+-+++.+|+..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~ 70 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWA 70 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHH
Confidence 57899999999995 888888656777888888888888888898888776 4577888889999865
No 22
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.77 E-value=0.0031 Score=59.79 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=98.4
Q ss_pred cchhcccccccchhHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc------
Q 044509 5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATA-CFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP------ 77 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~-~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~------ 77 (323)
.++.++|+|+...| ...+.|....+..++.+.+. ........|..++.|+ .-...+-.++.+||+......
T Consensus 10 ~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~~~~~~~~ 87 (426)
T PF13520_consen 10 VIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWGFIVGWLYWVA 87 (426)
T ss_dssp HHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccchhcccceeEEE
Confidence 35678999999999 77777754443333333333 4455555666665555 456777888889987621100
Q ss_pred -------------ccccccccccccccc-hhHH--HHHHHHhhhcccccCCchhHHHHHHHHHHH-HHhhhheeec---c
Q 044509 78 -------------HFDLKLGKLTIDGRH-AFVV--LGGVMILPTMWLNDLGILSFVSAGGVLSSI-IVTVCAFCVG---A 137 (323)
Q Consensus 78 -------------~~~~~~~~~~~~~~~-~~~~--i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~-~~~~~v~~~~---~ 137 (323)
+......+.+.+... ...+ +..++..-..-.+..|..++.+.......+ ...+.++... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~ 167 (426)
T PF13520_consen 88 YILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSF 167 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred eeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeee
Confidence 000011111221111 1122 222222223334456666666555444433 2211111111 1
Q ss_pred c-cccc---c-cCcccCCCCCChhhhhhhheeeccch----------------hhhHHHHHHHHHHHHHHHhHHHhhccc
Q 044509 138 T-KGVG---F-HGKRRLFNLNGIPTTLSLYTFCYGAH----------------HVLLLSFVICTITYLTMAVLGYLIYGQ 196 (323)
Q Consensus 138 ~-~~~~---~-~~~~~~~~~~~~~~~~~~~~faf~~~----------------~~~~~~~~i~~~~y~~~g~~gy~~fG~ 196 (323)
. +..+ . .+......+.+...++....|+|.+- |++..+..++.++|......-....++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 168 SFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp TCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred cccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhheeeecccc
Confidence 1 1111 0 01112234456778889999999976 778888888889998887665555544
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.76 E-value=0.0025 Score=60.96 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=45.4
Q ss_pred cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++.+|....+.|...+...++.+.........+.|.....|+ .-...+-+++.+|+..
T Consensus 19 ~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~~g~~~ 85 (445)
T PRK10644 19 VAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRCFGPFL 85 (445)
T ss_pred HHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHHcCchH
Confidence 468999999999998888877433344444555555556666777777665 2234444777888865
No 24
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.76 E-value=0.0067 Score=58.08 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=54.0
Q ss_pred cchhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++.+| .+.++.|-.+.+..++.+.+......-+.|...+.|+ .-...+-+++.+|+..
T Consensus 23 ~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~~~g~~~ 90 (452)
T TIGR01773 23 SIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADDAIGRWA 90 (452)
T ss_pred HHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcHH
Confidence 46789999999999 7788888656667777788888888888888877776 4577788889999876
No 25
>PRK10746 putative transport protein YifK; Provisional
Probab=97.72 E-value=0.0092 Score=57.34 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=50.6
Q ss_pred chhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+..++|+|++..| .+.+.+|-..++..++.+++.+....-+.|.....|+ .-++.+-+++.+|+..
T Consensus 22 ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~~~g~~~ 88 (461)
T PRK10746 22 LGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHRYMSPFF 88 (461)
T ss_pred HHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcHH
Confidence 5678999999988 6666777644455666777777777888888888776 5678888999999865
No 26
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.71 E-value=0.0035 Score=59.78 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=46.5
Q ss_pred cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++.+|...++.|-..+...++.++........+.|...+.|+ .-...+-+++ +|+..
T Consensus 16 ~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g~~~ 81 (435)
T PRK10435 16 VAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-ISPAF 81 (435)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HCcHH
Confidence 468899999999999999887545555566666666666777787777776 3344445555 67644
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=97.68 E-value=0.011 Score=56.79 Aligned_cols=67 Identities=13% Similarity=0.041 Sum_probs=51.7
Q ss_pred cchhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+..++|+|++..| .+.+++|-...+..++.+.+......-+.|...+.|+ .-...+-+++.+|+..
T Consensus 32 ~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~~~g~~~ 99 (458)
T PRK10249 32 ALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYKYWGPFA 99 (458)
T ss_pred hhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHH
Confidence 46789999999999 4555667545566677788888888888898888876 4577778889999865
No 28
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.66 E-value=0.0069 Score=58.32 Aligned_cols=67 Identities=18% Similarity=0.168 Sum_probs=47.8
Q ss_pred cchhcccccccchhHHHH-hccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-CHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPYALS-SGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTIT-SYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~-~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~-~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++.+|.... ..|.. .++..++.+.........+.|...+.|+ .. ...+-+++.+|+..
T Consensus 12 ~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~~~ 81 (468)
T TIGR03810 12 VVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGPFM 81 (468)
T ss_pred HHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCcHH
Confidence 468999999999997644 45544 3445667777777777777888777775 22 45666888999865
No 29
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=97.59 E-value=0.0023 Score=58.40 Aligned_cols=238 Identities=14% Similarity=0.211 Sum_probs=125.7
Q ss_pred cchhcccccccchhHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc----
Q 044509 5 GFILTPGIDILSIPYALSSG---GWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP---- 77 (323)
Q Consensus 5 l~~~~iG~GiL~lP~af~~~---G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~---- 77 (323)
+..+++|+|++.+|....+. ||++.++ .+.....-..+..+..++.|+ ++..|..++.+||+...++.
T Consensus 11 ~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll---~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg~ii~~~~~ 85 (320)
T PF03845_consen 11 LISSIIGTGILFLPAILAEQAGDAWISVLL---GGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLGKIINLLYI 85 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHHHHHHHHHH
Confidence 45788999999999887665 4764433 333444445566667777776 89999999999997633211
Q ss_pred -------cccc----cccc-ccccccchhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccccccccc
Q 044509 78 -------HFDL----KLGK-LTIDGRHAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFH 144 (323)
Q Consensus 78 -------~~~~----~~~~-~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (323)
.... +... ...++...+.. ...++..--.-.+.++.+.+.+.+-....+...+.+...... +.+++
T Consensus 86 l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~-~~~~~ 164 (320)
T PF03845_consen 86 LYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIP-NIDWD 164 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHH
Confidence 0000 0111 11111223332 222333333456677777775554443333333333322222 22222
Q ss_pred Ccc--cCCCCCChhhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHhhccccchhH----
Q 044509 145 GKR--RLFNLNGIPTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQ---- 201 (323)
Q Consensus 145 ~~~--~~~~~~~~~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~~fG~~~~~~---- 201 (323)
+.. ...++.+...+.-...+.|.+- |....+.....++|...-+..-..||.+..++
T Consensus 165 ~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P 244 (320)
T PF03845_consen 165 NLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYP 244 (320)
T ss_pred HeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecH
Confidence 211 2344445555544444444432 66777777777777777777777777543221
Q ss_pred hH---hcCCCchhHHH---HHHHHHHHHHhhhhccchhHHHHHHHHhcccccC
Q 044509 202 IT---LNLPIEQVSSK---VAIYTILAGPIAKYALTVMSIATAIERQLSASYK 248 (323)
Q Consensus 202 i~---~n~~~~~~~~~---v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~ 248 (323)
.. +..+-++.... +.-..-......+..+..+-..+.+.+.++.+++
T Consensus 245 ~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 297 (320)
T PF03845_consen 245 VLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDY 297 (320)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 11 11111111111 1112233455666677778888888888876543
No 30
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.53 E-value=0.008 Score=57.94 Aligned_cols=69 Identities=17% Similarity=0.093 Sum_probs=47.6
Q ss_pred ccchhcccccccchhHHHHhcc-HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 4 TGFILTPGIDILSIPYALSSGG-WL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 4 nl~~~~iG~GiL~lP~af~~~G-~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
-.+++++|+|++.+|....+.| -. .++..++.+.........+.|...+.|++.-...+-.++.+||+.
T Consensus 17 l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~ 87 (473)
T TIGR00905 17 LVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYI 87 (473)
T ss_pred HHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccccc
Confidence 3568999999999998877655 32 344456666666666777778777766522335556688999875
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.48 E-value=0.033 Score=54.83 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=92.4
Q ss_pred chhcccccccchhHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccc------cc-
Q 044509 6 FILTPGIDILSIPYAL--SSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEK------DV- 76 (323)
Q Consensus 6 ~~~~iG~GiL~lP~af--~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~------l~- 76 (323)
+..++|+|++.+|-.. ...|-...+..++.+..+.....-..|...+.|+ .-+...-.++.+|+.... +.
T Consensus 40 ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~ 118 (557)
T TIGR00906 40 IGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILE 118 (557)
T ss_pred hhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHH
Confidence 5678999999999543 3577443444556666666666666776666554 112222234456664310 00
Q ss_pred ---ccc--------c----cc--cc-------ccccc---ccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHh
Q 044509 77 ---PHF--------D----LK--LG-------KLTID---GRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT 129 (323)
Q Consensus 77 ---~~~--------~----~~--~~-------~~~~~---~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 129 (323)
... . .. .. +...+ .......+..++..-....+..+..++++.+.+...+...
T Consensus 119 ~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l 198 (557)
T TIGR00906 119 YVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVL 198 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 000 0 00 00 00001 0111111112222223345677777777766554433333
Q ss_pred hhheeeccc--cccccc-----Cccc--CCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHH
Q 044509 130 VCAFCVGAT--KGVGFH-----GKRR--LFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTIT 182 (323)
Q Consensus 130 ~~v~~~~~~--~~~~~~-----~~~~--~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~ 182 (323)
+.++..+.. +..+++ +.++ +.++.++..+.....|+|.+- |.+..+..++.++
T Consensus 199 ~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vl 278 (557)
T TIGR00906 199 LFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVA 278 (557)
T ss_pred HHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHH
Confidence 333333221 111111 1111 123345777788888999865 7888899999999
Q ss_pred HHHHHhH
Q 044509 183 YLTMAVL 189 (323)
Q Consensus 183 y~~~g~~ 189 (323)
|..+...
T Consensus 279 Y~lv~~~ 285 (557)
T TIGR00906 279 YFLMSAA 285 (557)
T ss_pred HHHHHHH
Confidence 9887654
No 32
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.43 E-value=0.036 Score=53.47 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=51.3
Q ss_pred chhcccccccchh-HHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIP-YALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP-~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+..++|+|++..| .+.++.|..+ +...++.+.+......-+.|.....|+..-.|.+-+++.+|+..
T Consensus 14 vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~ 82 (478)
T TIGR00913 14 LGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAF 82 (478)
T ss_pred HhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHH
Confidence 5679999999877 6777777554 55567777777777777888888887423478888999999875
No 33
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.41 E-value=0.032 Score=52.95 Aligned_cols=303 Identities=12% Similarity=0.068 Sum_probs=156.5
Q ss_pred ccccchhcccccccchhHHHHhc-cHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc--
Q 044509 2 ILTGFILTPGIDILSIPYALSSG-GWL--SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV-- 76 (323)
Q Consensus 2 ifnl~~~~iG~GiL~lP~af~~~-G~~--g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~-- 76 (323)
++.+++.++|+|++.-|.+..+. |-+ +.+.-++++.++.-+..-..|.-...++.--+|.=+.+ +||+....++
T Consensus 20 v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~-afg~~~aF~~~w 98 (479)
T KOG1287|consen 20 VSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISE-AFGPFPAFLFLW 98 (479)
T ss_pred eeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHH-HhccchhHHHHH
Confidence 45678899999999999666554 444 56667899999999888888866554431123333333 5776542111
Q ss_pred -------ccc-c---ccc----ccc---cccccch-hHHHHHHHHhhhcccccCCchhHHHHHHHH---HHHHHhhhhee
Q 044509 77 -------PHF-D---LKL----GKL---TIDGRHA-FVVLGGVMILPTMWLNDLGILSFVSAGGVL---SSIIVTVCAFC 134 (323)
Q Consensus 77 -------~~~-~---~~~----~~~---~~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~---~~~~~~~~v~~ 134 (323)
++. . ..+ .+. ..+..+. -.++.+.+...+.. +|....++.+.+=.+ +-+.+...++.
T Consensus 99 vs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~vq~~ft~~Kl~al~lIii 177 (479)
T KOG1287|consen 99 VSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTL-INSFSVKWATRVQIVFTIAKLLALLLIII 177 (479)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 0 000 010 1121222 22333333334443 366666665544332 22222222322
Q ss_pred ecc----ccccc---cc-CcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHh
Q 044509 135 VGA----TKGVG---FH-GKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAV 188 (323)
Q Consensus 135 ~~~----~~~~~---~~-~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~ 188 (323)
.+. ....+ .+ ......+..++..++-...|||.+= |++..++.++++.|+.+=+
T Consensus 178 ~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~Nv 257 (479)
T KOG1287|consen 178 TGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNV 257 (479)
T ss_pred hchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHh
Confidence 222 11111 11 2223455566788888888888864 8899999999999998766
Q ss_pred HHHhhccccchhHhHhc------CCC---chhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhccc---------ccCCC
Q 044509 189 LGYLIYGQNVQSQITLN------LPI---EQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSA---------SYKDC 250 (323)
Q Consensus 189 ~gy~~fG~~~~~~i~~n------~~~---~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~---------~~~~~ 250 (323)
..+.+- +.|.++.+ +.+ +++. ...-+...++.+.+.--..+..-+.+...-.+ .++++
T Consensus 258 Ay~~vl---s~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~ 333 (479)
T KOG1287|consen 258 AYFTVL---SPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRR 333 (479)
T ss_pred heeEec---CHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCC
Confidence 443222 22222211 100 1121 22333344444433332222221111111111 11101
Q ss_pred chhhhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceee
Q 044509 251 RSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYEL 313 (323)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~ 313 (323)
...+ ..+++.....++....+|++.+++.++=.-.....+.+=+++|++.+|++ .++.-|
T Consensus 334 ~TP~--~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~-~~rPiK 393 (479)
T KOG1287|consen 334 FTPR--PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP-LPRPIK 393 (479)
T ss_pred CCCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCEe
Confidence 0111 12233344445555667999999998877777888888899999988877 444433
No 34
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.39 E-value=0.035 Score=53.48 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=46.4
Q ss_pred cchhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++..| .+.+++|...+...++++.+......-+.|.....+. ..++.+.+++.+|+..
T Consensus 31 ~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~~g~~~ 98 (469)
T PRK11049 31 AIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDLLGPWA 98 (469)
T ss_pred HHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHhCcHH
Confidence 36789999999987 5788888643444555566565555556666554444 3567788999999865
No 35
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.38 E-value=0.06 Score=51.62 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=49.5
Q ss_pred cchhcccccccchhHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPYA-LSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~a-f~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+.+++|+|++.+|.. .+.+|-...+..++.+........-+.|...+.|+ .-...+-+++.+|+..
T Consensus 20 ~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~~~G~~~ 87 (457)
T PRK10580 20 ALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQENLGPLA 87 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHcCcHH
Confidence 4678899999999854 56666545566677777777777778888877775 4566667788899865
No 36
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.34 E-value=0.065 Score=51.42 Aligned_cols=67 Identities=12% Similarity=0.060 Sum_probs=47.9
Q ss_pred cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+++++|+|++-.|. +.+++|-..+...++.+........-+.|...+.|. .-++.+-+++.+|+..
T Consensus 23 ~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~~~g~~~ 90 (456)
T PRK10238 23 ALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYKYWGSFA 90 (456)
T ss_pred HhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHcCcHH
Confidence 367899999999984 555556423445666677777777777888777776 4567777788899865
No 37
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.33 E-value=0.048 Score=52.52 Aligned_cols=67 Identities=12% Similarity=0.074 Sum_probs=49.9
Q ss_pred cchhcccccccchhHH-HHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPYA-LSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~a-f~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.++.++|+|++..|.. .+.+|-. ..+..++.+.+......-+.|...+.|+ .-.+.+-.++.+|+..
T Consensus 25 ~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~~~g~~~ 93 (471)
T PRK11387 25 SLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAARYLGPAT 93 (471)
T ss_pred HHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHhcChHH
Confidence 3578999999988854 5677754 4555677777777777777888887776 4567778888899865
No 38
>PRK15049 L-asparagine permease; Provisional
Probab=97.31 E-value=0.038 Score=53.71 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=52.8
Q ss_pred cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+..++|+|++..|. +.++.|-.+++..++.+.+......-+.|.....|+ .-...+-+++.+|++.
T Consensus 39 ~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~~G~~~ 106 (499)
T PRK15049 39 AIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREFLGEKA 106 (499)
T ss_pred hhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCcHh
Confidence 357899999999985 777788656666777788888888888898888876 5677778888999865
No 39
>PRK10836 lysine transporter; Provisional
Probab=97.30 E-value=0.076 Score=51.43 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=51.3
Q ss_pred cchhcccccccchhH-HHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPY-ALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~-af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+.+++|+|++..|. +.++.|-. .+...++.+++......-+.|...+.|+ .-...+-+++.+|+..
T Consensus 26 ~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~~~~g~~~ 94 (489)
T PRK10836 26 AIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQNYVEEGF 94 (489)
T ss_pred HHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHcChHH
Confidence 467899999999994 77788865 5667788888888888888998888876 4455555666666543
No 40
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.13 E-value=0.096 Score=54.73 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=47.2
Q ss_pred chhcccccccchh-HHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIP-YALSSGGWL-SLIILVLIAATACFTALLLRQCMDK-DPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP-~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~-~~~~~~~y~~l~~~~~G~~~ 72 (323)
+.+++|+|++--| +...++|.. +.+..+++++++..+..=+.+.+.. .++ .-.-....++++|+..
T Consensus 89 ~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~yisralGp~~ 157 (953)
T TIGR00930 89 LLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYLISRSLGPEF 157 (953)
T ss_pred hHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHhCcHH
Confidence 6788999997665 777899977 7888888888888888877776654 332 1223344566777743
No 41
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.04 E-value=0.081 Score=50.52 Aligned_cols=64 Identities=13% Similarity=0.029 Sum_probs=39.0
Q ss_pred chhcccccccchhHH-HHhccH-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC--CCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIPYA-LSSGGW-L-SLIILVLIAATACFTALLLRQCMDKDPDT--ITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP~a-f~~~G~-~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~--~~~y~~l~~~~~G~~~ 72 (323)
+..++|+|++..|.. .++.|- . .+...++.+.+......-..|.....|+. ...| .++.+|+..
T Consensus 20 vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~~~g~~~ 88 (445)
T PRK11357 20 VGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKNAGSRPL 88 (445)
T ss_pred HHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHHhcCChh
Confidence 456789999999976 445563 2 34445555666666666666666555431 2344 346677754
No 42
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.03 E-value=0.12 Score=50.16 Aligned_cols=66 Identities=18% Similarity=0.170 Sum_probs=44.6
Q ss_pred chhcccccccchhHH-HHhccHHH--HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIPYA-LSSGGWLS--LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP~a-f~~~G~~g--~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+++++|+|++..|.. .+++|-.| .+..++.+.........+.|.....|+ .-...+-.++.+|+..
T Consensus 54 vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~~~~~g~~~ 122 (501)
T TIGR00911 54 VGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYILEVFGPLL 122 (501)
T ss_pred eeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhHHhHhCCHH
Confidence 467899999999965 56667433 334456666777777777888777765 2344555566788864
No 43
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=96.94 E-value=0.25 Score=47.14 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=44.1
Q ss_pred hhcccccccchhHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 7 ILTPGIDILSIPYALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 7 ~~~iG~GiL~lP~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
..++|......+.+.++.|+.+ +...++.+........-+.|...+.|+ .-...+-+++.+|+..
T Consensus 20 ~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~~~G~~~ 85 (442)
T TIGR00908 20 GYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARRAFGPWG 85 (442)
T ss_pred HHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhCcHH
Confidence 4456644455678888999874 344555555666666667888877776 4566667788999865
No 44
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.38 E-value=1 Score=43.76 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=39.1
Q ss_pred chhcccccccchhHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIPYALSSGGWLSLIILVLIAATA-CFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~-~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+++++|.+ .+|.++++.|..+++..++.+.+. .-....+.|.....|+..-.-.+=.++.+|++.
T Consensus 19 ~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~ 84 (496)
T PRK15238 19 FTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKF 84 (496)
T ss_pred HHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchH
Confidence 35666755 569889998876555555555443 334445667766655311345555666788765
No 45
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=96.19 E-value=0.09 Score=49.43 Aligned_cols=294 Identities=16% Similarity=0.163 Sum_probs=146.0
Q ss_pred hhccccccc-chhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------cc--
Q 044509 7 ILTPGIDIL-SIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------VP-- 77 (323)
Q Consensus 7 ~~~iG~GiL-~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~~-- 77 (323)
...||+|.+ .--.+.+.+|--=++.-+++|.+.+.=++.|.|...++|+ ..++.|.+++.+|+++... +.
T Consensus 26 GGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~~lG~~Agf~tgW~YW~~wv 104 (462)
T COG1113 26 GGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARKYLGPWAGFLTGWTYWFFWV 104 (462)
T ss_pred hhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 456777754 2223444444323444678888899999999999988887 7899999999999987211 00
Q ss_pred -ccccc------cccccccccchhHHH--HHHHHhh--hcccccCCchhHH-HHHHHHHHHHHhhh---heeecccccc-
Q 044509 78 -HFDLK------LGKLTIDGRHAFVVL--GGVMILP--TMWLNDLGILSFV-SAGGVLSSIIVTVC---AFCVGATKGV- 141 (323)
Q Consensus 78 -~~~~~------~~~~~~~~~~~~~~i--~~~i~~p--l~~~~~l~~l~~~-s~~~~~~~~~~~~~---v~~~~~~~~~- 141 (323)
....+ ..+.+.++...|+.. ..++..- +.-.|...++.++ +.+=+++++..++. .+...+..+.
T Consensus 105 ~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~ 184 (462)
T COG1113 105 LVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGG 184 (462)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 00001 122344444455432 2222222 3445666666553 33333333332221 2222222211
Q ss_pred --ccc---Ccc--cCCCCCChhhhhhhheeeccch------------------hhhHH-----HHHHHHHHHHHHHhHHH
Q 044509 142 --GFH---GKR--RLFNLNGIPTTLSLYTFCYGAH------------------HVLLL-----SFVICTITYLTMAVLGY 191 (323)
Q Consensus 142 --~~~---~~~--~~~~~~~~~~~~~~~~faf~~~------------------~~~~~-----~~~i~~~~y~~~g~~gy 191 (323)
+.+ +++ .+..+.++..++-..+|||++. |+.+- ..+-+..+.+.+.+.-+
T Consensus 185 ~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW 264 (462)
T COG1113 185 AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPW 264 (462)
T ss_pred CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccc
Confidence 111 122 2556778889999999999987 32222 22223333445555556
Q ss_pred hhccccchhHhH--hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc---------cCCC-chhhhhHHH
Q 044509 192 LIYGQNVQSQIT--LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS---------YKDC-RSASILIRM 259 (323)
Q Consensus 192 ~~fG~~~~~~i~--~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~ 259 (323)
-.++++.++-+. .... -+....+.|+......+.+.-=-.+..-+.+..+-.+. +|++ .+.-+.+..
T Consensus 265 ~~~~~~~SPFV~~f~~iG-i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~ 343 (462)
T COG1113 265 NQIGEDGSPFVTVFSLIG-IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSA 343 (462)
T ss_pred cccCCCCCcHHHHHHHcC-CcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHH
Confidence 555554333222 2221 11222222322222222222222222223333322111 1111 223466777
Q ss_pred HHHHHHHHHHhhcCc--hhHHHHHhhhhHHHHHHHhhhhhhhhhhcc
Q 044509 260 SLLVSTVVLATVFPS--FQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304 (323)
Q Consensus 260 ~~~~~~~~~A~~vp~--~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~ 304 (323)
+...+..++....|+ ++.+.+..+.. ......+=.+.|+|.+|
T Consensus 344 ~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 344 VVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 777888888889993 44555443332 22344455667888776
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=95.41 E-value=2.2 Score=40.61 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=41.6
Q ss_pred chhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+.+++|.|++.+|......+.......++.+.+.........|...+.++ .-.+.+-.++.+|++.
T Consensus 25 ~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~ 90 (466)
T COG0531 25 VGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAKRALGPRL 90 (466)
T ss_pred HHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehhhhcCcch
Confidence 45678899999998888775112222344444444445666666665554 3456777788888754
No 47
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=93.16 E-value=0.23 Score=47.85 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=50.4
Q ss_pred chhcccccccc-hhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 6 FILTPGIDILS-IPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 6 ~~~~iG~GiL~-lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+..++|+|.+. .+.+..+.|.. ..+..++.++....+..-+.|..++.++ .-++.+.+++.+|+..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~ 74 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPAL 74 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcC
Confidence 45677888764 45788888887 6667788888888888888888888775 5577788888999865
No 48
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=92.87 E-value=7.2 Score=35.43 Aligned_cols=68 Identities=19% Similarity=0.088 Sum_probs=51.8
Q ss_pred cchhcccccccchhHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccc
Q 044509 5 GFILTPGIDILSIPYA---LSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEK 74 (323)
Q Consensus 5 l~~~~iG~GiL~lP~a---f~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 74 (323)
.+.+++|+|-=+==-- |..-|+-|+.-.++++.+-..++....+..++.+. .+|+|.-++.+|++..+
T Consensus 12 ~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~k 82 (349)
T COG3949 12 FIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAK 82 (349)
T ss_pred HHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHH
Confidence 3456777776553333 33445557888888888888999999999999886 99999999999998743
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=92.80 E-value=9.6 Score=36.69 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=32.7
Q ss_pred cccchhHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 13 DILSIPYALSSGGWLSLIILVLIAATAC-FTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 13 GiL~lP~af~~~G~~g~~~l~~~~~~~~-~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
++-.+|.+ ++.|...++..++.+.+.. -......|.....|+ .-...+-.++.+|++.
T Consensus 18 ~~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~~ 76 (474)
T TIGR03813 18 SLRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGARW 76 (474)
T ss_pred HhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChhH
Confidence 45556755 6777654444444444332 244455666666655 3455566677888765
No 50
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=91.66 E-value=11 Score=36.39 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=50.8
Q ss_pred HHHhHHHhhccccc--hhHhHhcCCCchhHHHHHHHHHHHHHhhhhc-cch-hHHHHHHHHhcccccCCCchhhhhHHHH
Q 044509 185 TMAVLGYLIYGQNV--QSQITLNLPIEQVSSKVAIYTILAGPIAKYA-LTV-MSIATAIERQLSASYKDCRSASILIRMS 260 (323)
Q Consensus 185 ~~g~~gy~~fG~~~--~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~p-l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (323)
..+..++..||++. +.++..+++++....-++-+.+++..+..-- -.. -|..| +...+++.-+-+|-..+.....
T Consensus 294 v~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D-~s~l~Pk~in~krg~liaA~ia 372 (497)
T COG1953 294 VVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYD-LSALFPKYINIKRGGLIAAIIA 372 (497)
T ss_pred hHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHH-HHHhcccccchhhhHHHHHHHH
Confidence 34456688999984 5577788876533221222222222221111 111 22333 4444443221111122233333
Q ss_pred HHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhh
Q 044509 261 LLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLL 294 (323)
Q Consensus 261 ~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~ 294 (323)
+.+.+.-+=..-..+...++..|++.+....-++
T Consensus 373 l~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi 406 (497)
T COG1953 373 LLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI 406 (497)
T ss_pred HHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445567777766777666555444
No 51
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=89.63 E-value=23 Score=35.02 Aligned_cols=295 Identities=16% Similarity=0.170 Sum_probs=140.8
Q ss_pred chhcccccccc-hhHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccc-----cc---
Q 044509 6 FILTPGIDILS-IPYALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDE-----KD--- 75 (323)
Q Consensus 6 ~~~~iG~GiL~-lP~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~-----~l--- 75 (323)
+.+++|+|++= ...+.++.|-.+ ++-.++.+.....+..=+.|..-+.|...-++..-+++..|+... +.
T Consensus 42 iGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~ 121 (554)
T KOG1286|consen 42 IGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLLE 121 (554)
T ss_pred ecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHHH
Confidence 46788999864 457788888764 445677777788888878887777775112233334444554330 00
Q ss_pred --c--cc------cccc-cc-------c-ccccccchhH--HHHHHHHhhhcccccCCchhHHHHHH----HHHHHHHhh
Q 044509 76 --V--PH------FDLK-LG-------K-LTIDGRHAFV--VLGGVMILPTMWLNDLGILSFVSAGG----VLSSIIVTV 130 (323)
Q Consensus 76 --~--~~------~~~~-~~-------~-~~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~----~~~~~~~~~ 130 (323)
. +. ..++ +. . ...+ .-.|. ....++.+-+.-.|-..+.++..... .+..+. ..
T Consensus 122 y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~-~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~I-l~ 199 (554)
T KOG1286|consen 122 YVIGLAAEARAWSSYLDYWTGASLIGILVDTVN-PGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFII-LA 199 (554)
T ss_pred HHHhhhHHHHHHHHHHHHHhccccccccccCCC-CCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHH-hh
Confidence 0 00 0001 10 0 0111 11222 22233333333344433333333222 222222 22
Q ss_pred hheeec-ccccc-cc------cCccc--CCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHH
Q 044509 131 CAFCVG-ATKGV-GF------HGKRR--LFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTIT 182 (323)
Q Consensus 131 ~v~~~~-~~~~~-~~------~~~~~--~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~ 182 (323)
+++..+ ..++. ++ +++.. +..+.++...+-+..|+|.+- ++...++..+..+
T Consensus 200 iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~ 279 (554)
T KOG1286|consen 200 IVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLF 279 (554)
T ss_pred eeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHH
Confidence 222333 22221 22 22222 233788889999999999976 7788889999999
Q ss_pred HHHHHhHH-Hh-hcccc-chhHh-----H---hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-----
Q 044509 183 YLTMAVLG-YL-IYGQN-VQSQI-----T---LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS----- 246 (323)
Q Consensus 183 y~~~g~~g-y~-~fG~~-~~~~i-----~---~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~----- 246 (323)
|....+.- -. -|.|. ..++. . .+...-+....+.+....+.+..+----.++.-+.+..+-++.
T Consensus 280 Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~ 359 (554)
T KOG1286|consen 280 YILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKF 359 (554)
T ss_pred HHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchH
Confidence 99877632 21 22220 11111 0 0111111111244555555555554444555555444443221
Q ss_pred --cCCCchhhhhHHHHHHHHHHHHHhhcCc-----hhHHHHHhhhhHHHHHHHhhhhhhhhhhcc
Q 044509 247 --YKDCRSASILIRMSLLVSTVVLATVFPS-----FQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304 (323)
Q Consensus 247 --~~~~~~~~~~~~~~~~~~~~~~A~~vp~-----~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~ 304 (323)
+-+++-.-+....+..+...+.++.... ++.++++.|- ++.+++..=++.|+..++
T Consensus 360 f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 360 FARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 0111211223333333444444444433 6888888764 444566666666666654
No 52
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=83.87 E-value=45 Score=32.58 Aligned_cols=296 Identities=14% Similarity=0.147 Sum_probs=156.0
Q ss_pred chhccccccc-chhHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccc---------c
Q 044509 6 FILTPGIDIL-SIPYALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDE---------K 74 (323)
Q Consensus 6 ~~~~iG~GiL-~lP~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~---------~ 74 (323)
+...||+|.+ +.-.+.+++|-.| ++.-++++.+.+..+.=|.|.+-..|. .-++.+-+.+..++... +
T Consensus 56 iGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfvdpa~GFa~gWnYw~~ 134 (541)
T COG0833 56 IGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFVDPAFGFALGWNYWLN 134 (541)
T ss_pred hccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhcCchHHHHHHHHHHHH
Confidence 4567888874 7779999999884 666899999999999999999988885 45688888888776431 0
Q ss_pred cccccccc------cccccc-c--ccchhHHHHHHHHhhh--cccccCCchhH-HHHHHHHHHHHHhhh--heeecccc-
Q 044509 75 DVPHFDLK------LGKLTI-D--GRHAFVVLGGVMILPT--MWLNDLGILSF-VSAGGVLSSIIVTVC--AFCVGATK- 139 (323)
Q Consensus 75 l~~~~~~~------~~~~~~-~--~~~~~~~i~~~i~~pl--~~~~~l~~l~~-~s~~~~~~~~~~~~~--v~~~~~~~- 139 (323)
.......+ ....+. + ....|+.++.++++-+ .-.|...+..+ +|.+=+++++..+++ ++..+..+
T Consensus 135 w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~ 214 (541)
T COG0833 135 WAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPT 214 (541)
T ss_pred HHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11000111 111121 1 1335666655555444 34566666554 344444443333332 22222221
Q ss_pred -cc---c-ccCcc-cCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHh-HHHh-h
Q 044509 140 -GV---G-FHGKR-RLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAV-LGYL-I 193 (323)
Q Consensus 140 -~~---~-~~~~~-~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~-~gy~-~ 193 (323)
++ . ++++. ...++.++...+-+..|+|.+. |++.-.+.=..++|+..-+ .|.. -
T Consensus 215 ~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvP 294 (541)
T COG0833 215 HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVP 294 (541)
T ss_pred CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEcc
Confidence 11 1 12222 3456677888888999999986 5555555556666664332 2222 2
Q ss_pred cccc----------chhHhHhcCCCc--hhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc---------cCCCch
Q 044509 194 YGQN----------VQSQITLNLPIE--QVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS---------YKDCRS 252 (323)
Q Consensus 194 fG~~----------~~~~i~~n~~~~--~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~---------~~~~~~ 252 (323)
|.|. .+++....+.+. +....+.|..++.+++.+--=-++..-+.+.++-++. +++.++
T Consensus 295 y~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP 374 (541)
T COG0833 295 YNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVP 374 (541)
T ss_pred CCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCc
Confidence 3221 011111111111 1223444544444444333333344444444443321 222334
Q ss_pred h-hhhHHHHHHHHHHHHHhhcC--chhHHHHHhhhhHHHHHHHhhhhhhhhhhcc
Q 044509 253 A-SILIRMSLLVSTVVLATVFP--SFQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304 (323)
Q Consensus 253 ~-~~~~~~~~~~~~~~~A~~vp--~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~ 304 (323)
. -+.++.++-+++++-+..-. -++-++++.|-.. .++.+-=++.|++-+|
T Consensus 375 ~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 375 LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4 34555555566665555522 2677777776443 3455666777777664
No 53
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=83.07 E-value=48 Score=32.31 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=30.6
Q ss_pred ccccchhHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCCCHHHHHHhhcCccc
Q 044509 12 IDILSIPYALSSGGWLSLIILVLIAAT-ACFTALLLRQCMDKDP-DTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 12 ~GiL~lP~af~~~G~~g~~~l~~~~~~-~~~t~~~L~~~~~~~~-~~~~~y~~l~~~~~G~~~ 72 (323)
.++-.+| .+++.|+-.+...++.+++ ..-......|.....+ + .-...+=+++++|++.
T Consensus 20 ~~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~G~~~ 80 (507)
T TIGR00910 20 LAVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTLGERF 80 (507)
T ss_pred HHHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhccCccH
Confidence 3666778 5778886544443333332 2224445556554432 2 1334444567778755
No 54
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=74.68 E-value=75 Score=29.74 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=15.0
Q ss_pred CCHHHHHHhhcCccccc
Q 044509 58 TSYIDIVGHAFGHKDEK 74 (323)
Q Consensus 58 ~~y~~l~~~~~G~~~~~ 74 (323)
.++..+.|..||++|..
T Consensus 58 l~~~v~sR~~FG~~Gs~ 74 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSV 74 (386)
T ss_pred cCHHHHHHHHHccchhh
Confidence 68999999999999953
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=73.72 E-value=85 Score=29.92 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=14.4
Q ss_pred CCHHHHHHhhcCccccc
Q 044509 58 TSYIDIVGHAFGHKDEK 74 (323)
Q Consensus 58 ~~y~~l~~~~~G~~~~~ 74 (323)
.++..+.|..||++|..
T Consensus 76 l~~~v~sR~~FG~~Gs~ 92 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSL 92 (442)
T ss_pred CCcchhhhhhhhhhHhH
Confidence 68888999999999843
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=72.58 E-value=92 Score=29.82 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhHHHhhccccc-hhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhh
Q 044509 176 FVICTITYLTMAVLGYLIYGQNV-QSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSAS 254 (323)
Q Consensus 176 ~~i~~~~y~~~g~~gy~~fG~~~-~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~ 254 (323)
......+-...|...-.+=|+.. ..+....+.+ + ...+.+...++...+--...++..-.+.+...+- ++..+
T Consensus 236 ~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~--~-g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l---~k~~~ 309 (442)
T COG1457 236 FFLGTSFMMILGAALAAAAGNADSIADVMLGLGG--F-GLPAILILVLGTVTTNANNLYSAGLSFANIIPKL---SKVTR 309 (442)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc--H-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh---hhHHH
Confidence 34444555667777777777665 3333333322 2 2334444555666666666666655555554431 22333
Q ss_pred hhHHHHHHHHHHHHHhh----cCchhHHHHHhhhhHHHHHHHh
Q 044509 255 ILIRMSLLVSTVVLATV----FPSFQSVTSLIGAFLKVVVSFL 293 (323)
Q Consensus 255 ~~~~~~~~~~~~~~A~~----vp~~~~v~~lvGa~~~~~l~~i 293 (323)
.+...+. +.+++|.. ..+++..+.+.|..........
T Consensus 310 ~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~ 350 (442)
T COG1457 310 VVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVM 350 (442)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222 33344443 4566777777665544443333
No 57
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=71.42 E-value=1.1e+02 Score=30.09 Aligned_cols=29 Identities=17% Similarity=0.339 Sum_probs=21.8
Q ss_pred hhHHHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509 275 FQSVTSLIGAFLKVVVSFLLPCVSYLNISEV 305 (323)
Q Consensus 275 ~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~ 305 (323)
++.+++. +.....++|..|..+-+-..|+
T Consensus 416 f~Alfs~--a~i~l~~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 416 FNALFSA--AAIALFIAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHHH--HHHHHHHHHHHhHHhheeeccc
Confidence 5666664 4556678999999998887775
No 58
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=70.72 E-value=18 Score=33.54 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=48.0
Q ss_pred ccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHH-HhhhhCCCCCCCHHHHHHhhcCccccccc
Q 044509 4 TGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLR-QCMDKDPDTITSYIDIVGHAFGHKDEKDV 76 (323)
Q Consensus 4 nl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~-~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 76 (323)
|-..++.|+|-.-=|..-.+-||+ +.+..++-+.+.---..... -.+.+++. +|.+|++++..||+++.+|
T Consensus 60 hhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G--~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 60 HHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKG--KSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred HHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCC--ccHHHHHHHHHHHHHHHHH
Confidence 446788999999999888999999 87765443333321111111 12233344 7999999999999996544
No 59
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=69.53 E-value=1.1e+02 Score=29.43 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=36.1
Q ss_pred hhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcc
Q 044509 17 IPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHK 71 (323)
Q Consensus 17 lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~ 71 (323)
.+.+.++.|-. -+...++.+++......-+.|...+.|+ .-...+-+++.+|++
T Consensus 37 ~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~Gg~y~~~~~~~g~~ 91 (482)
T TIGR00907 37 YNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SGGQYFWSAKLAPPR 91 (482)
T ss_pred HHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHhcccc
Confidence 34566677765 3555677777777777778888877775 345556666677753
No 60
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=61.99 E-value=78 Score=30.97 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=14.4
Q ss_pred HHhhhcccccCCchhHHHHHHH
Q 044509 101 MILPTMWLNDLGILSFVSAGGV 122 (323)
Q Consensus 101 i~~pl~~~~~l~~l~~~s~~~~ 122 (323)
...-++..|.+++.+.+..+..
T Consensus 189 ~iv~~~i~kGi~~~~kv~~~~~ 210 (523)
T PF00209_consen 189 LIVFFGIWKGIESIGKVMYPTL 210 (523)
T ss_dssp HHHTTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHheEeccccccchhhhhh
Confidence 3445677788887777666544
No 61
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=59.19 E-value=53 Score=31.20 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=42.9
Q ss_pred CchhhhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509 250 CRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEV 305 (323)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~ 305 (323)
.+.+|...|....+.+..+.+...+...++.+.+.+.+..+-+..+++..+..+|+
T Consensus 323 ~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 323 LWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 45567777777776666666666699999999999988888888888777777664
No 62
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=57.61 E-value=1.8e+02 Score=27.89 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=38.5
Q ss_pred ccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 10 PGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 10 iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+|.|+.+.| .+..+.|-..+...++.+........-+.|...+.|+ .-...+-+++.+|+..
T Consensus 30 ~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~-aGG~Y~~~~~~~g~~~ 92 (475)
T TIGR03428 30 ILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPI-SGAIYQWSRRMGGEVI 92 (475)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCHHHHHHHHcCccc
Confidence 677877777 5555666422333555555666666667777777665 3345555677888865
No 63
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=53.76 E-value=1.9e+02 Score=27.02 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=36.8
Q ss_pred cccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 11 GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 11 G~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
|...++.|....+.|+.+................+..+..++.+. .|..|.-++-||++.
T Consensus 21 ~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 21 ASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNGA--YTMPEYLEKRFGKRI 80 (407)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CchhHHHHHHhCchH
Confidence 345667777777777543322222333333444555555566554 899999999999854
No 64
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=53.45 E-value=1.9e+02 Score=26.94 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=35.0
Q ss_pred ccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 12 IDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 12 ~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
...++.|-...+.|+.+....+............+.+-.++.+. .|..|.-++-||++.
T Consensus 25 ~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 25 WTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGA--VTIPEYLEKRYGSKA 83 (406)
T ss_dssp HHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT----SHHHHHHHHT-HHH
T ss_pred HHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccch--hhhhhhhhhhcCCch
Confidence 35677888888888653333333333333344455665666654 899999999999887
No 65
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=53.36 E-value=2e+02 Score=26.99 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=35.2
Q ss_pred cchhcccccccchhH-HHHhcc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 5 GFILTPGIDILSIPY-ALSSGG--WL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~GiL~lP~-af~~~G--~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+..-.+|+|.|=.|- --+++| |. +.+..++.+...-..... +.-+.+ .+|+++.++. ||+.
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g---G~~~~l~~~~-g~~f 68 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG---GGYDSLSARI-GKVF 68 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC---CCHHHHHHHh-ChHH
Confidence 445678999999984 444555 55 666555555544433332 111222 4888888854 4444
No 66
>PRK11375 allantoin permease; Provisional
Probab=52.61 E-value=2.3e+02 Score=27.51 Aligned_cols=16 Identities=13% Similarity=0.403 Sum_probs=14.4
Q ss_pred CCHHHHHHhhcCcccc
Q 044509 58 TSYIDIVGHAFGHKDE 73 (323)
Q Consensus 58 ~~y~~l~~~~~G~~~~ 73 (323)
.++.-+.+..||.+|.
T Consensus 89 l~~~v~sR~sFG~~Gs 104 (484)
T PRK11375 89 VPFAMILRASYGVRGA 104 (484)
T ss_pred CChhHhHHHHHccccc
Confidence 6899999999999984
No 67
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=47.16 E-value=2.7e+02 Score=26.82 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=19.1
Q ss_pred HHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 45 LLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 45 ~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
.+.+..++.+. .|..|.-++-||++.
T Consensus 97 ~~~~~~r~~~~--~T~~e~l~~Ryg~~~ 122 (483)
T PRK09442 97 KFAILARKYNA--VTLNDMLRARYQSRL 122 (483)
T ss_pred HHHHHHHHcCC--ccHHHHHHHHhCChH
Confidence 34445566654 899999999999765
No 68
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=42.56 E-value=1.9e+02 Score=27.48 Aligned_cols=89 Identities=10% Similarity=0.269 Sum_probs=60.8
Q ss_pred hhhccchhHHHHHHHHhccc----c------cC--CCchhhhhHHHHHHHHHHHHHhhcCc-hhHHHHHhhhhHHHHHHH
Q 044509 226 AKYALTVMSIATAIERQLSA----S------YK--DCRSASILIRMSLLVSTVVLATVFPS-FQSVTSLIGAFLKVVVSF 292 (323)
Q Consensus 226 ~s~pl~~~~~~~~~~~~~~~----~------~~--~~~~~~~~~~~~~~~~~~~~A~~vp~-~~~v~~lvGa~~~~~l~~ 292 (323)
.++|.+.++.+....+.+.- + .+ +.+..|..........+.+.++..|. +....+..|++.....+-
T Consensus 284 ~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~ 363 (415)
T COG0814 284 LSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAP 363 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 66666777666543332221 0 11 12333667778888899999999885 788889899999999999
Q ss_pred hhhhhhhhhhcccc-cccceeeE
Q 044509 293 LLPCVSYLNISEVY-RNWGYELI 314 (323)
Q Consensus 293 i~P~l~~l~~~~~~-~~~~~~~~ 314 (323)
++|.+++++-++.. +.+.+|..
T Consensus 364 i~~~ll~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 364 IIPALLFIKPRKLIYKLPALKVY 386 (415)
T ss_pred HHHHHHHHHHHHhcCCCCceeec
Confidence 99999998886443 34444443
No 69
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=41.52 E-value=28 Score=21.39 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccccc
Q 044509 173 LLSFVICTITYLTMAVLGYLIYGQNV 198 (323)
Q Consensus 173 ~~~~~i~~~~y~~~g~~gy~~fG~~~ 198 (323)
..+..+..++-...|..-|.+||...
T Consensus 6 ~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 6 VLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 34556666666677777788998654
No 70
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=39.57 E-value=30 Score=21.57 Aligned_cols=26 Identities=19% Similarity=0.177 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccccc
Q 044509 173 LLSFVICTITYLTMAVLGYLIYGQNV 198 (323)
Q Consensus 173 ~~~~~i~~~~y~~~g~~gy~~fG~~~ 198 (323)
.++..+..++.-..|..-|-+||+..
T Consensus 9 ~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 9 SLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred HHHHHHHHHHHHHhhheeeeccCCcc
Confidence 34455555555566666677888764
No 71
>CHL00020 psbN photosystem II protein N
Probab=36.19 E-value=30 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHHhhccccc
Q 044509 173 LLSFVICTITYLTMAVLGYLIYGQNV 198 (323)
Q Consensus 173 ~~~~~i~~~~y~~~g~~gy~~fG~~~ 198 (323)
..+..+..++.-..|..-|-+||+..
T Consensus 6 ~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 6 LVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hHHHHHHHHHHHhhheeeeeccCCch
Confidence 34555555556666666678888764
No 72
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=35.33 E-value=2.1e+02 Score=27.11 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=15.2
Q ss_pred HHhhhhCCCCCCCHHHHHHhhcCccccc
Q 044509 47 RQCMDKDPDTITSYIDIVGHAFGHKDEK 74 (323)
Q Consensus 47 ~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 74 (323)
.....+++ .++..++|..||.+|..
T Consensus 63 ~~~G~r~G---l~~~v~sR~~FG~~Gs~ 87 (440)
T PF02133_consen 63 GIIGPRTG---LPTMVLSRASFGYRGSK 87 (440)
T ss_dssp THHHHCC------HHHHTTTTS-TTTTH
T ss_pred cccccccC---CCchhcchhccCcchHH
Confidence 33444444 68999999999999843
No 73
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=34.43 E-value=51 Score=31.36 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=42.1
Q ss_pred cchhccccc-ccchhHHHHhccHHHHHHHHHHHHHH---HHHHHHHHHhhhhCCCCCCCH-----HHHHHhhcCccc
Q 044509 5 GFILTPGID-ILSIPYALSSGGWLSLIILVLIAATA---CFTALLLRQCMDKDPDTITSY-----IDIVGHAFGHKD 72 (323)
Q Consensus 5 l~~~~iG~G-iL~lP~af~~~G~~g~~~l~~~~~~~---~~t~~~L~~~~~~~~~~~~~y-----~~l~~~~~G~~~ 72 (323)
...+.+|.| ++.+|.+.+..|-.++.-|-+.+++. .|.-..|.+-.++.++ +.+| .++-+...||+.
T Consensus 56 ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~-~g~~~GGP~yyi~~gl~~k~l 131 (425)
T TIGR00835 56 SLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDA-DGVFRGGPMYYIKKGLGMRWL 131 (425)
T ss_pred HHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC-CCCEecChHHHHHHHhCccHH
Confidence 456889998 99999998888744655554444433 3444444444443333 2347 788777777764
No 74
>PRK15015 carbon starvation protein A; Provisional
Probab=31.20 E-value=59 Score=32.66 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=47.6
Q ss_pred ccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHH--HHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc
Q 044509 4 TGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATAC--FTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV 76 (323)
Q Consensus 4 nl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~--~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~ 76 (323)
|-..++.|+|-+-=|.--.+-||+ |.+-.++=+.+.- +-+..|.-..|+ +. +|.+|++++..|+++..++
T Consensus 91 HHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~-~G--rSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 91 HHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRR-DG--RSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred HHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecC-CC--ccHHHHHHHHhhHHHHHHH
Confidence 345788999999999999999999 8776554333321 111122222233 33 7999999999999985433
No 75
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=28.27 E-value=1e+02 Score=18.15 Aligned_cols=21 Identities=24% Similarity=0.650 Sum_probs=15.6
Q ss_pred hccHH--HHHHHHHHHHHHHHHH
Q 044509 23 SGGWL--SLIILVLIAATACFTA 43 (323)
Q Consensus 23 ~~G~~--g~~~l~~~~~~~~~t~ 43 (323)
+=||+ |+.++.+...+..|+.
T Consensus 13 Er~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 13 ERGWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 45786 8888888777777775
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=24.74 E-value=6.3e+02 Score=24.25 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=32.6
Q ss_pred cchhccccc-ccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh-----hhCCCCCCCHHHHHH
Q 044509 5 GFILTPGID-ILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCM-----DKDPDTITSYIDIVG 65 (323)
Q Consensus 5 l~~~~iG~G-iL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~-----~~~~~~~~~y~~l~~ 65 (323)
.+.+.+|.| +.-.|+.-.+.|=.+.++.-++..+..=--.++.|-. +.. ...+|+.+..
T Consensus 18 a~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~--~~~a~~~l~~ 82 (439)
T COG0733 18 AAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKN--AVGAFRKLAP 82 (439)
T ss_pred HHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCC--hhHHHHHhcc
Confidence 345566666 5678887777775444444444444433334444433 222 2467877775
Done!