Query 044509
Match_columns 323
No_of_seqs 110 out of 1112
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 06:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044509.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044509hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 13.0 3.6E+02 0.026 22.5 14.2 63 5-69 14-82 (509)
2 d1xmeb2 f.17.2.1 (B:3-36) Bact 10.1 1.1E+02 0.008 14.9 2.8 20 22-41 12-33 (34)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 7.8 2.7E+02 0.02 19.9 5.2 44 29-72 97-140 (199)
4 d1x41a1 a.4.1.1 (A:8-54) Trans 6.4 2.2E+02 0.016 15.2 3.1 26 45-72 11-36 (47)
5 d2h8pc1 f.14.1.1 (C:22-78) Pot 5.6 1.6E+02 0.012 16.8 2.0 41 170-211 6-46 (57)
6 d1i1ga1 a.4.5.32 (A:2-61) LprA 5.0 2.3E+02 0.017 15.9 2.5 20 46-67 8-27 (60)
7 d1sfea1 a.4.2.1 (A:93-176) Ada 4.2 2.2E+02 0.016 17.6 2.0 16 56-71 19-34 (84)
8 d2cyya1 a.4.5.32 (A:5-64) Puta 3.9 3.1E+02 0.023 15.1 2.5 20 46-67 8-27 (60)
9 d1qnta1 a.4.2.1 (A:92-176) O6- 3.5 4.7E+02 0.034 15.9 3.3 25 46-70 8-33 (85)
10 d1ciya3 f.1.3.1 (A:33-255) del 3.5 4E+02 0.029 19.4 3.5 26 258-283 5-30 (223)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=12.97 E-value=3.6e+02 Score=22.49 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=31.2
Q ss_pred cchhccccc-ccchhHHH-HhccH--H-H-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcC
Q 044509 5 GFILTPGID-ILSIPYAL-SSGGW--L-S-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFG 69 (323)
Q Consensus 5 l~~~~iG~G-iL~lP~af-~~~G~--~-g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G 69 (323)
.+...+|.| +.-.|+-. ++.|. + - .+++++++.=..+-=..+.|..++.+. ..++.+.....+
T Consensus 14 ~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~i--~~~~~i~~~~~~ 82 (509)
T d2a65a1 14 MAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH--GTTPAIFYLLWR 82 (509)
T ss_dssp HHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC--CSHHHHHHHHSC
T ss_pred HHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcc--cHHHHHHHHhcc
Confidence 344555554 34467554 44442 2 2 334444444444444445555555543 666666655444
No 2
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=10.14 E-value=1.1e+02 Score=14.87 Aligned_cols=20 Identities=35% Similarity=0.698 Sum_probs=10.5
Q ss_pred HhccHH--HHHHHHHHHHHHHH
Q 044509 22 SSGGWL--SLIILVLIAATACF 41 (323)
Q Consensus 22 ~~~G~~--g~~~l~~~~~~~~~ 41 (323)
.+-||+ +..++++.-.+..|
T Consensus 12 yekgwlafslamlfvfialiay 33 (34)
T d1xmeb2 12 YEKGWLAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHhc
Confidence 356886 55555444444444
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.79 E-value=2.7e+02 Score=19.91 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 29 LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 29 ~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
....+..+...-++.++.-+..++.+++.++-+|...+...+.+
T Consensus 97 ~~~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g 140 (199)
T d1iwga7 97 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQ 140 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhh
Confidence 34455666666677777765543321112455666666655554
No 4
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.39 E-value=2.2e+02 Score=15.19 Aligned_cols=26 Identities=8% Similarity=0.037 Sum_probs=19.5
Q ss_pred HHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509 45 LLRQCMDKDPDTITSYIDIVGHAFGHKD 72 (323)
Q Consensus 45 ~L~~~~~~~~~~~~~y~~l~~~~~G~~~ 72 (323)
+|.++.+.++. .++.+++..+-|+..
T Consensus 11 ~L~~~v~~~G~--~nW~~Ia~~~~~Rt~ 36 (47)
T d1x41a1 11 ALLEAVMDCGF--GNWQDVANQMCTKTK 36 (47)
T ss_dssp HHHHHHHHTCT--TCHHHHHHHHTTSCH
T ss_pred HHHHHHHHHCC--ccHHHHHHHcCCCCH
Confidence 56777777775 789999998766543
No 5
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.64 E-value=1.6e+02 Score=16.81 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHhHHHhhccccchhHhHhcCCCchh
Q 044509 170 HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQV 211 (323)
Q Consensus 170 ~~~~~~~~i~~~~y~~~g~~gy~~fG~~~~~~i~~n~~~~~~ 211 (323)
|.+..+..+..+.-+..+...|..=.+. ++.-..++|+.-|
T Consensus 6 R~~~~~~~~~~i~i~~~s~~~y~~E~~~-~~~~f~sip~a~W 46 (57)
T d2h8pc1 6 RAAGAATVLLVIVLLAGSYLAVLAERGA-PGAQLITYPRALW 46 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccccccchhhh
Confidence 4455566666666666777777765433 3333445554433
No 6
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.03 E-value=2.3e+02 Score=15.90 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=14.3
Q ss_pred HHHhhhhCCCCCCCHHHHHHhh
Q 044509 46 LRQCMDKDPDTITSYIDIVGHA 67 (323)
Q Consensus 46 L~~~~~~~~~~~~~y~~l~~~~ 67 (323)
++++.+..+. .+|.|+++.+
T Consensus 8 Il~~L~~n~r--~s~~~lA~~~ 27 (60)
T d1i1ga1 8 ILEILEKDAR--TPFTEIAKKL 27 (60)
T ss_dssp HHHHHHHCTT--CCHHHHHHHH
T ss_pred HHHHHHHcCC--CCHHHHHHHH
Confidence 4555566665 8999999865
No 7
>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli [TaxId: 562]}
Probab=4.18 E-value=2.2e+02 Score=17.59 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=11.8
Q ss_pred CCCCHHHHHHhhcCcc
Q 044509 56 TITSYIDIVGHAFGHK 71 (323)
Q Consensus 56 ~~~~y~~l~~~~~G~~ 71 (323)
+..||+|+++.+--++
T Consensus 19 ~v~TYg~iA~~~g~~~ 34 (84)
T d1sfea1 19 ETVSYQQLANAIGKPK 34 (84)
T ss_dssp CCEEHHHHHHHTTCTT
T ss_pred CeeeHHHHHHHhCCcc
Confidence 4789999998764343
No 8
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.87 E-value=3.1e+02 Score=15.13 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=14.1
Q ss_pred HHHhhhhCCCCCCCHHHHHHhh
Q 044509 46 LRQCMDKDPDTITSYIDIVGHA 67 (323)
Q Consensus 46 L~~~~~~~~~~~~~y~~l~~~~ 67 (323)
+++..+..+. .++.|+++++
T Consensus 8 Il~~L~~n~r--~s~~eiA~~l 27 (60)
T d2cyya1 8 IIKILQNDGK--APLREISKIT 27 (60)
T ss_dssp HHHHHHHCTT--CCHHHHHHHH
T ss_pred HHHHHHHcCC--CCHHHHHHHH
Confidence 4455555554 7999999976
No 9
>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.54 E-value=4.7e+02 Score=15.87 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=16.0
Q ss_pred HHHhhhhCCC-CCCCHHHHHHhhcCc
Q 044509 46 LRQCMDKDPD-TITSYIDIVGHAFGH 70 (323)
Q Consensus 46 L~~~~~~~~~-~~~~y~~l~~~~~G~ 70 (323)
+++.....|. ...||+|+++.+--+
T Consensus 8 vw~~l~~IP~G~v~TYg~iA~~~g~p 33 (85)
T d1qnta1 8 LWKLLKVVKFGEVISYQQLAALAGNP 33 (85)
T ss_dssp HHHHHHHCCTTCCEEHHHHHHHTTCT
T ss_pred HHHHHhcCCCCCcccHHHHHHHcCCc
Confidence 4455555432 478999999875433
No 10
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis, CRYIA (A) [TaxId: 1428]}
Probab=3.46 E-value=4e+02 Score=19.44 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcCchhHHHHHhh
Q 044509 258 RMSLLVSTVVLATVFPSFQSVTSLIG 283 (323)
Q Consensus 258 ~~~~~~~~~~~A~~vp~~~~v~~lvG 283 (323)
.+.+-++.++++.++|..+.++++++
T Consensus 5 ~i~~~~~~~ll~~~iP~~g~~~~li~ 30 (223)
T d1ciya3 5 DISLSLTQFLLSEFVPGAGFVLGLVD 30 (223)
T ss_dssp HHHHHHHHHHHHCCSSSHHHHHHHHH
T ss_pred hhHHHHHHHHhhhcCCchHHHHHHHH
Confidence 34555778888888999988877653
Done!