BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044511
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 277 bits (708), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 160/366 (43%), Positives = 215/366 (58%), Gaps = 52/366 (14%)
Query: 18 RSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLELI 77
R+ Y PT+W F IQS DS+YK E + + +QV MLQ++ +D + +LELI
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEE-----VDSIRRLELI 90
Query: 78 DNLHRLGNT----------------------NKSLYATALKFRVLRQY------ETFSRF 109
D+L RLG + + LY+TAL+FR+LRQY E F F
Sbjct: 91 DDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCF 150
Query: 110 MDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWVIKHDSNKND 157
+ KG DD +G+L L R A F T +L++ V+ +
Sbjct: 151 KNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLV-----DK 205
Query: 158 DEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVHQEN 217
D +L + + ALELP HWR+ AR FID Y+ PDMNP +LELAK+DFN+VQA Q+
Sbjct: 206 DINLLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQE 265
Query: 218 LKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDD 277
LK ASRWW TGL E L FVRDRIVE ++W+ G Q GY R M T +NAL+T IDD
Sbjct: 266 LKEASRWWNSTGLVHE-LPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDD 324
Query: 278 VYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDIL 337
V+D+YGTLEEL++FT A++RWD +++QLP YM++C+ AL N +NEM +D LRD+G D
Sbjct: 325 VFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDS- 383
Query: 338 ISYLKK 343
YL+K
Sbjct: 384 TPYLRK 389
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 58/375 (15%)
Query: 16 IRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLE 75
IRRS +Y P +W +YIQSL++ Y E + + + QV +L++ ++P+ QLE
Sbjct: 5 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEK-----MEPVQQLE 59
Query: 76 LIDNLHRLG-----------------NTNKS----------LYATALKFRVLRQY----- 103
LI +L LG N +K LY TAL FR+LRQ+
Sbjct: 60 LIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS 119
Query: 104 -ETFSRFMDEKGRFKSSGHSDDGKGMLAL-----IFRD-------ATSFTTAYLKEWVIK 150
+ F+ F +EKG + + D KGML L + R A F T L++ K
Sbjct: 120 QDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQK---K 176
Query: 151 HDSNKND-DEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNI 209
D N+ DE+L + H+L+LPLHWR+ +EARWFID Y PDMNP++ ELAK++FNI
Sbjct: 177 LDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNI 236
Query: 210 VQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEP-QFGYFRRMSTMV 268
+QA HQ+ LK SRWW + E L FVRDR+VE+FFW+VG FEP Q GY R+M+ +
Sbjct: 237 IQATHQQELKDLSRWWSRLCFP-EKLPFVRDRLVESFFWAVG-MFEPHQHGYQRKMAATI 294
Query: 269 NALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDV 328
L T IDD+YDVYGTL+ELE+FTD +RWD ++ +LP+YM+LC+ + N I++ +D+
Sbjct: 295 IVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDI 354
Query: 329 LRDQGVDILISYLKK 343
L++ G + YL+K
Sbjct: 355 LKEHGF-FCLQYLRK 368
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 262 bits (670), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/369 (42%), Positives = 213/369 (57%), Gaps = 54/369 (14%)
Query: 17 RRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLEL 76
RRSADY P W +D++ S D+ E Y + +K + +V + + + L LEL
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKA----EFLTLLEL 70
Query: 77 IDNLHRLG------------------------NTNKSLYATALKFRVLRQY------ETF 106
IDN+ RLG T SL+ATAL FR+LRQ+ E F
Sbjct: 71 IDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQEAF 130
Query: 107 SRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWVIKHDSN 154
S F D+ G F + +D K +L+L I +A F ++LKE S
Sbjct: 131 SGFKDQNGNFLEN-LKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL-----SE 184
Query: 155 KNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNIVQAVH 214
+ + L VNHALELPLH R RLEA W I+ Y D N +LLELA +D+N++Q+V+
Sbjct: 185 EKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVY 244
Query: 215 QENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITA 274
Q +L+ SRWW++ GL + L+F RDR++E+F+W+VG FEPQ+ R + + +T
Sbjct: 245 QRDLRETSRWWRRVGLATK-LHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTI 303
Query: 275 IDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGV 334
IDD+YDVYGTL+ELE+FTDAVERWD A+ LP YMKLCF AL N+INE+ +D L+D+G
Sbjct: 304 IDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE 363
Query: 335 DILISYLKK 343
+IL YL K
Sbjct: 364 NIL-PYLTK 371
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 247 bits (631), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 216/374 (57%), Gaps = 58/374 (15%)
Query: 16 IRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDDKVVDLDPLHQLE 75
+RRS +Y P+ W ++IQSL S YK + K + + E V+ + + +K + D + QLE
Sbjct: 1 MRRSGNYNPSRWDVNFIQSLLSDYKED---KHVIRASELVTLVKMELEK--ETDQIRQLE 55
Query: 76 LIDNLHRLGNTN----------------------------KSLYATALKFRVLRQY---- 103
LID+L R+G ++ + LY+T+L FR+LR++
Sbjct: 56 LIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQV 115
Query: 104 --ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWVI 149
E F F +E+G FK S SDD +G+L L A F T +L+E V
Sbjct: 116 AQEVFDSFKNEEGEFKES-LSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKV- 173
Query: 150 KHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELAKVDFNI 209
+ D L T + ++L++PLHWR+ R A +I+ Y PDMNP++LELA +D NI
Sbjct: 174 ---NEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNI 230
Query: 210 VQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVN 269
VQA QE LK + RWW+ TG E L F RDR+VE +FW+ G Q R M VN
Sbjct: 231 VQAQFQEELKESFRWWRNTGFV-EKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVN 289
Query: 270 ALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVL 329
ALIT IDD+YDVYGTLEELE FTD + RWD +++QLP YM+LCF AL N +++ ++DV+
Sbjct: 290 ALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVM 349
Query: 330 RDQGVDILISYLKK 343
+++GV++ I YL++
Sbjct: 350 KEKGVNV-IPYLRQ 362
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 195 bits (495), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 55/355 (15%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQ-SLDSKYKGESYAKQLEKPKEQVSAMLQQD 62
++ + ++ I+R AD+ P++W ++ S+D++ E YAK++E KEQ ML
Sbjct: 2 ASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQV-AEKYAKEIEALKEQTRNMLLAT 60
Query: 63 D-KVVDLDPLHQLELIDNLHRLG-------------------NTN-KSLYATALKFRVLR 101
K+ D L LID + RLG N+N L +AL+FR+LR
Sbjct: 61 GMKLAD-----TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLR 115
Query: 102 QY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAY 143
Q+ E FS+F DE G+FK S SD G+L L I DA +F+T +
Sbjct: 116 QHGFNISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 144 LKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLEL 202
L+ S + V HALE LH + R+E R+FI +Y+ N +LL
Sbjct: 175 LESAAPHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRF 228
Query: 203 AKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFR 262
AK+DFN++Q +H++ L SRWWK L + RDR+VE +FW++G FEPQ+ R
Sbjct: 229 AKLDFNLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFWALGVYFEPQYSQAR 287
Query: 263 RMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
M ++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 288 VMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 342
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 55/355 (15%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQ-SLDSKYKGESYAKQLEKPKEQVSAMLQQD 62
++ + ++ I+R AD+ P++W ++ S+D++ E YAK++E KEQ ML
Sbjct: 2 ASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQV-AEKYAKEIEALKEQTRNMLLAT 60
Query: 63 D-KVVDLDPLHQLELIDNLHRLG-------------------NTN-KSLYATALKFRVLR 101
K+ D L LID + RLG N+N L +AL+FR+LR
Sbjct: 61 GMKLAD-----TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLR 115
Query: 102 QY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAY 143
Q+ E FS+F DE G+FK S SD G+L L I DA +F+T +
Sbjct: 116 QHGFNISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 144 LKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLEL 202
L+ S + V HALE LH + R+E R+FI +Y+ N +LL
Sbjct: 175 LESAAPHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRF 228
Query: 203 AKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFR 262
AK+DFN++Q +H++ L SRWWK L + RDR+VE +FW++G FEPQ+ R
Sbjct: 229 AKLDFNLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFWALGVYFEPQYSQAR 287
Query: 263 RMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
M ++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 288 VMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 342
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 186/356 (52%), Gaps = 53/356 (14%)
Query: 2 AASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQ 61
+ ++ + ++ I+R AD+ P++W ++ E YAK++E KEQ ML
Sbjct: 2 SMASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLA 61
Query: 62 DD-KVVDLDPLHQLELIDNLHRLG-------------------NTN-KSLYATALKFRVL 100
K+ D L LID + RLG N+N L +AL+FR+L
Sbjct: 62 TGMKLAD-----TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLL 116
Query: 101 RQY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTA 142
RQ+ E FS+F DE G+FK S SD G+L L I DA +F+T
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTI 175
Query: 143 YLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLE 201
+L+ S + V HALE LH + R+E R+FI +Y+ N +LL
Sbjct: 176 HLESAAPHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 229
Query: 202 LAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYF 261
AK+DFN++Q +H++ L SRWWK L + RDR+VE +FW++G FEPQ+
Sbjct: 230 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFWTLGVYFEPQYSQA 288
Query: 262 RRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
R M ++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 289 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 344
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/356 (34%), Positives = 186/356 (52%), Gaps = 53/356 (14%)
Query: 2 AASTTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQ 61
+ ++ + ++ I+R AD+ P++W ++ E YAK++E KEQ ML
Sbjct: 2 SMASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLA 61
Query: 62 DD-KVVDLDPLHQLELIDNLHRLG-------------------NTN-KSLYATALKFRVL 100
K+ D L LID + RLG N+N L +AL+FR+L
Sbjct: 62 TGMKLAD-----TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLL 116
Query: 101 RQY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTA 142
RQ+ E FS+F DE G+FK S SD G+L L I DA +F+T
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTI 175
Query: 143 YLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLE 201
+L+ S + V HALE LH + R+E R+FI +Y+ N +LL
Sbjct: 176 HLESAAPHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLR 229
Query: 202 LAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYF 261
AK+DFN++Q +H++ L SRWWK L + RDR+VE +FW++G FEPQ+
Sbjct: 230 FAKLDFNLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFWALGVYFEPQYSQA 288
Query: 262 RRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
R M ++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 289 RVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 344
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 194 bits (492), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 192/350 (54%), Gaps = 45/350 (12%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQ-SLDSKYKGESYAKQLEKPKEQVSAML--- 59
++ + ++ I+R AD+ P++W ++ S+D++ E YA+++E KEQ +ML
Sbjct: 2 ASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQV-AEKYAQEIEALKEQTRSMLLAT 60
Query: 60 --QQDDKVVDLDPLHQL-----------ELIDNLHRLGNTNKSLYATALKFRVLRQY--- 103
+ D + +D + +L E++D ++ + L +AL+FR+LRQ+
Sbjct: 61 GRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFN 120
Query: 104 ---ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWV 148
E FS+F DE G+FK S SD G+L L I DA +F+T +L+
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 149 IKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLELAKVDF 207
S + V HALE LH + R+E R+FI +Y+ N +LL AK+DF
Sbjct: 180 PHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 208 NIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTM 267
N++Q +H++ L SRWWK L + RDR+VE +FW++G FEPQ+ R M
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFWALGVYFEPQYSQARVMLVK 292
Query: 268 VNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 342
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 192/350 (54%), Gaps = 45/350 (12%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQ-SLDSKYKGESYAKQLEKPKEQVSAML--- 59
++ + ++ I+R AD+ P++W ++ S+D++ E YA+++E KEQ +ML
Sbjct: 2 ASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQV-AEKYAQEIEALKEQTRSMLLAT 60
Query: 60 --QQDDKVVDLDPLHQL-----------ELIDNLHRLGNTNKSLYATALKFRVLRQY--- 103
+ D + +D + +L E++D ++ + L +AL+FR+LRQ+
Sbjct: 61 GRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNSNCNDLCTSALQFRLLRQHGFN 120
Query: 104 ---ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWV 148
E FS+F DE G+FK S SD G+L L I DA +F+T +L+
Sbjct: 121 ISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 179
Query: 149 IKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLELAKVDF 207
S + V HALE LH + R+E R+FI +Y+ N +LL AK+DF
Sbjct: 180 PHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDF 233
Query: 208 NIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTM 267
N++Q +H++ L SRWWK L + RDR+VE +FW++G FEPQ+ R M
Sbjct: 234 NLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFWALGVYFEPQYSQARVMLVK 292
Query: 268 VNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 293 TISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 342
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 179/342 (52%), Gaps = 53/342 (15%)
Query: 16 IRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDD-KVVDLDPLHQL 74
+R AD+ P++W ++ E YAK++E KEQ ML K+ D L
Sbjct: 1 VRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLAD-----TL 55
Query: 75 ELIDNLHRLG-------------------NTN-KSLYATALKFRVLRQY------ETFSR 108
LID + RLG N+N L +AL+FR+LRQ+ E FS+
Sbjct: 56 NLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNISPEIFSK 115
Query: 109 FMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAYLKEWVIKHDSNKN 156
F DE G+FK S SD G+L L I DA +F+T +L+ S
Sbjct: 116 FQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLR 174
Query: 157 DDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLELAKVDFNIVQAVHQ 215
+ V HALE LH + R+E R+FI +Y+ N +LL AK+DFN++Q +H+
Sbjct: 175 EQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHK 228
Query: 216 ENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAI 275
+ L SRWWK L + RDR+VE +FW++G FEPQ+ R M ++I+ +
Sbjct: 229 QELAQVSRWWKDLDFVT-TLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 287
Query: 276 DDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 288 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 329
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 189/355 (53%), Gaps = 55/355 (15%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQ-SLDSKYKGESYAKQLEKPKEQVSAMLQQD 62
++ + ++ I+R AD+ P++W ++ S+D++ E YAK++E KEQ ML
Sbjct: 2 ASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQV-AEKYAKEIEALKEQTRNMLLAT 60
Query: 63 D-KVVDLDPLHQLELIDNLHRLG-------------------NTN-KSLYATALKFRVLR 101
K+ D L LID + RLG N+N L +AL+FR+LR
Sbjct: 61 GMKLAD-----TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLR 115
Query: 102 QY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAY 143
Q+ E FS+F DE G+FK S SD G+L L I DA +F+T +
Sbjct: 116 QHGFNISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 144 LKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLEL 202
L+ S + V HALE LH + R+E R+FI +Y+ N +LL
Sbjct: 175 LESAAPHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRF 228
Query: 203 AKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFR 262
AK+DFN++Q +H++ L SRWWK L + RDR+VE +F ++G FEPQ+ R
Sbjct: 229 AKLDFNLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFSALGVYFEPQYSQAR 287
Query: 263 RMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
M ++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 288 VMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 342
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 189/355 (53%), Gaps = 55/355 (15%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQ-SLDSKYKGESYAKQLEKPKEQVSAMLQQD 62
++ + ++ I+R AD+ P++W ++ S+D++ E YAK++E KEQ ML
Sbjct: 2 ASAAVANYEEEIVRPVADFSPSLWGDQFLSFSIDNQV-AEKYAKEIEALKEQTRNMLLAT 60
Query: 63 D-KVVDLDPLHQLELIDNLHRLG-------------------NTN-KSLYATALKFRVLR 101
K+ D L LID + RLG N+N L +AL+FR+LR
Sbjct: 61 GMKLAD-----TLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLR 115
Query: 102 QY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAY 143
Q+ E FS+F DE G+FK S SD G+L L I DA +F+T +
Sbjct: 116 QHGFNISPEIFSKFQDENGKFKESLASD-VLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 144 LKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFID-VYENGPDMNPILLEL 202
L+ S + V HALE LH + R+E R+FI +Y+ N +LL
Sbjct: 175 LESAAPHLKSPLREQ------VTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRF 228
Query: 203 AKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFR 262
AK+DFN++Q +H++ L SRWWK L + RDR+VE +F ++G FEPQ+ R
Sbjct: 229 AKLDFNLLQMLHKQELAQVSRWWKDLDFVT-TLPYARDRVVECYFSALGVYFEPQYSQAR 287
Query: 263 RMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHAL 317
M ++I+ +DD +D YGT++ELE +TDA++RWD +++LP YMK+ + A+
Sbjct: 288 VMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAI 342
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 200/379 (52%), Gaps = 56/379 (14%)
Query: 4 STTPIKPADQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAMLQQDD 63
S++P+ +++ +R AD+ P+IW ++ D E+ K+ ++ KE+V M+
Sbjct: 10 SSSPLS-SNKDEMRPKADFQPSIWGDLFLNCPDKNIDAET-EKRHQQLKEEVRKMI---- 63
Query: 64 KVVDL-DPLHQLELIDNLHRLG------------------NTNKS---LYATALKFRVLR 101
V + + +L ID++ RLG N N + LY T+++FR+LR
Sbjct: 64 -VAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLR 122
Query: 102 QY------ETFSRFMDEKGRFKSSGHSDDGKGMLAL------------IFRDATSFTTAY 143
++ + F++F DE+G FKSS SD +G+L L I +A SFTT +
Sbjct: 123 EHGYNVSCDVFNKFKDEQGNFKSSVTSD-VRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 144 LKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDMNPILLELA 203
L V D +++ V+HAL+ + + R+EAR ++ VY++ N LLE A
Sbjct: 182 LSLAVASLDHPLSEE------VSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFA 235
Query: 204 KVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRR 263
K+DFN++Q +H++ L RWWK L + RDR+VE +FW G FEPQ+ R+
Sbjct: 236 KIDFNMLQFLHRKELSEICRWWKDLDFQ-RKLPYARDRVVEGYFWISGVYFEPQYSLGRK 294
Query: 264 MSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINE 323
M T V A+ + +DD YD Y T EEL +T+A+ERWD ++++P YMK + AL + E
Sbjct: 295 MLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEE 354
Query: 324 MTFDVLRDQGVDILISYLK 342
M ++ + G + Y K
Sbjct: 355 MV-QLVAEHGRQYRVEYAK 372
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 110/342 (32%), Positives = 171/342 (50%), Gaps = 71/342 (20%)
Query: 68 LDPLHQLELIDNLHRLG------------------------------NTNKSLYATALKF 97
+D L +L ++DN+ RLG N L TAL F
Sbjct: 296 VDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGF 355
Query: 98 RVLRQYE------TFSRFMDEKGRF-KSSGH-SDDGKGMLAL------------IFRDAT 137
R+LR + F F D G+F S+G + D ML L I +A
Sbjct: 356 RLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAK 415
Query: 138 SFTTAYLKEWVIKHDSNK--NDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDM 195
SF T YL+E + K +++ N+ ++L + +AL+ H + R+EA+ + VY PD
Sbjct: 416 SFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYR--PDY 473
Query: 196 --------------NPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDR 241
N LEL K+DFNI+Q++HQE +K + W++ +GL F R+R
Sbjct: 474 ARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL--PLFTFARER 531
Query: 242 IVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVERWDAT 301
+E +F +EPQ+ R + T V L T +DD+YD YGTL+EL++FT+AV RWD +
Sbjct: 532 PLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLS 591
Query: 302 AVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDILISYLKK 343
E LP YMKLC+ + ++E+ ++ ++QG + L+S+ +K
Sbjct: 592 FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRE-LVSFFRK 632
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 15 IIRRSADYGPTIWSFDYIQSLDSKYKGESYAKQLEKPKEQVSAML 59
+IRR+A+ P +W +D + SL S Y SY ++ E ++ AML
Sbjct: 23 LIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAML 67
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 145/280 (51%), Gaps = 39/280 (13%)
Query: 90 LYATALKFRVLRQY------ETFSRFMDEKGRF-KSSGHSDDGKGMLALIFR-------- 134
L TAL R LR + + + F DE GRF S+G + + +FR
Sbjct: 296 LNTTALGLRTLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPD 355
Query: 135 -----DATSFTTAYLKEWVIKHDSNKNDDEHLCTLVNHALELPLHWRMLRLEARWFIDVY 189
DA F YL+E + S + L + + +E P H + RLEAR +ID Y
Sbjct: 356 ERAMDDARKFAEPYLREALATKIST---NTKLFKEIEYVVEYPWHMSIPRLEARSYIDSY 412
Query: 190 ENG-----------PDM-NPILLELAKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNF 237
++ P + N LELAK+DFNIVQ++HQE LK +RWWK++G+ ++NF
Sbjct: 413 DDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA--DINF 470
Query: 238 VRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNALITAIDDVYDVYGTLEELEIFTDAVER 297
R R+ E +F S FEP++ R T + L DD+ D++ TL+EL+ FT+ V+R
Sbjct: 471 TRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKR 528
Query: 298 WDATAVEQLPHYMKLCFHALRNSINEMTFDVLRDQGVDIL 337
WD + + ++P M+ CF + E+ DV++ QG D+L
Sbjct: 529 WDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDML 568
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 112/187 (59%), Gaps = 18/187 (9%)
Query: 165 VNHALELPLHWRMLRLEARWFIDVYENGPD---------MNPIL-----LELAKVDFNIV 210
V +AL+ P H M RLEAR +I+ Y GPD M P + LELAK+DFN V
Sbjct: 417 VEYALKYPWHKSMPRLEARSYIENY--GPDDVWLGKTVYMMPYISNEKYLELAKLDFNKV 474
Query: 211 QAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFRRMSTMVNA 270
Q++HQ L+ RWWK +G +LNF R+R+ E +F FEP+F R + T +
Sbjct: 475 QSIHQTELQDLRRWWKSSGF--TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSN 532
Query: 271 LITAIDDVYDVYGTLEELEIFTDAVERWDATAVEQLPHYMKLCFHALRNSINEMTFDVLR 330
+DD+YD +G+L++L++FT++V+RWD + V+Q+P MK+CF N+ N++ +
Sbjct: 533 FTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRE 592
Query: 331 DQGVDIL 337
QG D+L
Sbjct: 593 RQGRDVL 599
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 101/253 (39%), Gaps = 62/253 (24%)
Query: 75 ELIDNLHRLGNTNKSLYA----------TALKFRVLRQY------ETFSRFMDEKGRFKS 118
E +D +HR N +A TA+ FR+LRQ+ + F F E F
Sbjct: 270 ECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNFEKEGEFFCF 329
Query: 119 SGHSDDG-KGMLAL------------IFRDATSFTTAYLKE----------WVIKHDSNK 155
G S+ GM L I ++A F+ YL E W+I D
Sbjct: 330 VGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKD--- 386
Query: 156 NDDEHLCTLVNHALELPLHWRMLRLEARWFIDVYENGPDM-------------NPILLEL 202
L + ALE+P + + R+E R++ID Y D+ N LEL
Sbjct: 387 -----LPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLEL 441
Query: 203 AKVDFNIVQAVHQENLKYASRWWKKTGLGGENLNFVRDRIVENFFWSVGEKFEPQFGYFR 262
AK D+N QA HQ +W+++ L + R ++E ++ + FE + + R
Sbjct: 442 AKQDYNNCQAQHQLEWDIFQKWYEENRLSEWGVR--RSELLECYYLAAATIFESERSHER 499
Query: 263 RMSTMVNALITAI 275
+ + L+ AI
Sbjct: 500 MVWAKSSVLVKAI 512
>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease
Length = 335
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 204 KVDFNIVQAVHQENLKYASRWWKKTGLG-GENLNFVRDRIVENFFWS--VGEKFEPQFGY 260
K D NI N Y W + + N F + E F+ S V + F+ GY
Sbjct: 75 KPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDFDNNSGY 134
Query: 261 FRRMSTMVNALITAIDDVYDVYGTL 285
+ R+ L +DV+ V G L
Sbjct: 135 WNRIEMYCRELTERFEDVWVVSGPL 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,723,130
Number of Sequences: 62578
Number of extensions: 461869
Number of successful extensions: 1060
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 957
Number of HSP's gapped (non-prelim): 33
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)