BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044512
(230 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3LJS|A Chain A, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LJS|B Chain B, Crystal Structure Of Fructokinase From Xylella Fastidiosa
pdb|3LKI|A Chain A, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
pdb|3LKI|B Chain B, Crystal Structure Of Fructokinase With Bound Atp From
Xylella Fastidiosa
Length = 338
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 109/216 (50%)
Query: 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLK 62
G D FG L + + V T+G+ + A+TALAFV L +GER F FYR P+AD+L +
Sbjct: 59 LGSDXFGDFLFDSFAEAGVVTDGIVRTSTAKTALAFVALDAHGERSFSFYRPPAADLLFR 118
Query: 63 DSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPSQD 122
A IFH S S G ++S+D N R LWP+ +
Sbjct: 119 VEHFQDASFSDALIFHACSNSXTDADIAEVTFEGXRRAQAAGAIVSFDLNFRPXLWPNGE 178
Query: 123 AARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGY 182
+ + AD++K+S +E+++L A+ + V+ LW +LLLVT A +
Sbjct: 179 NPASRLWKGLSLADVVKLSSEELDYLANTLAADANAVIQQLWQGRAQLLLVTDAAGPVHW 238
Query: 183 FTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAK 218
+T+ G VP F V+ D+ AGDAFVG L + A+
Sbjct: 239 YTRTAGGEVPTFRVQVQDSNAAGDAFVGGXLYTFAQ 274
>pdb|3HJ6|A Chain A, Structure Of Halothermothrix Orenii Fructokinase (Frk)
pdb|3HJ6|B Chain B, Structure Of Halothermothrix Orenii Fructokinase (Frk)
Length = 327
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 5/212 (2%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLL 61
+ G D FG+ L+++LK + T+G+ D RT + +V+ K +++ YR AD L
Sbjct: 76 RLGADAFGNYLLDVLKGEQIITDGIQQDKERRTTIVYVS-KSTRTPDWLPYRE--ADXYL 132
Query: 62 KDSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPSQ 121
++ ++ LIK++K+FH + L +P R G ++ +DP R LWP
Sbjct: 133 QEDDIIFELIKRSKVFHLSTFILSRKPARDTAIKAFNYAREQGKIVCFDPCYRKVLWPEG 192
Query: 122 DAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCG 181
D ++ I + AD +K S D+ L G ++ V +K +++T G +G
Sbjct: 193 DDGAGVVEEIISRADFVKPSLDDARHLF--GPDSPENYVKRYLELGVKAVILTLGEEGVI 250
Query: 182 YFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
+ R+P FS +D TGAGDAF F+
Sbjct: 251 ASDGEEIIRIPAFSEDAVDVTGAGDAFWSGFI 282
>pdb|3EWM|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
pdb|3EWM|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii
Length = 313
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 20/219 (9%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSA-DML 60
+ G+D FG L+ L + NV T G+ D T + FV LK F+ Y + + +
Sbjct: 55 KVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLK-GASPSFLLYDDVAYFNXT 113
Query: 61 LKDSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPS 120
L D +N ++++AKI ++GS+ L P R L+++D N+RL LW
Sbjct: 114 LND--INWDIVEEAKIVNFGSVILARNPSRETVXKVIKKIKGSS-LIAFDVNLRLDLWRG 170
Query: 121 QDAARDGIKSIWNH---ADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177
Q+ + IK + AD++K S++EV +L G K + + +T G
Sbjct: 171 QE--EEXIKVLEESIKLADIVKASEEEVLYLENQGVEVKGSXLTA----------ITLGP 218
Query: 178 KGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSV 216
KGC + VP ++V +DTTGAGDAF + LV +
Sbjct: 219 KGCRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGI 257
>pdb|3GBU|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|C Chain C, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3GBU|D Chain D, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With Atp
pdb|3IH0|A Chain A, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
pdb|3IH0|B Chain B, Crystal Structure Of An Uncharacterized Sugar Kinase
Ph1459 From Pyrococcus Horikoshii In Complex With
Amp-Pnp
Length = 313
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSA-DML 60
+ G+D FG L+ L + NV T G+ D T + FV LK F+ Y + + +
Sbjct: 55 KVGNDPFGEYLIEELSKENVDTRGIVKDEKKHTGIVFVQLK-GASPSFLLYDDVAYFNXT 113
Query: 61 LKDSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPS 120
L D +N ++++AKI ++GS+ L P R L+++D N+RL LW
Sbjct: 114 LND--INWDIVEEAKIVNFGSVILARNPSRETVXKVIKKIKGSS-LIAFDVNLRLDLWRG 170
Query: 121 QDAARDGIKSIWNH---ADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177
Q+ + IK + AD++K S++EV +L G K + + +T G
Sbjct: 171 QE--EEXIKVLEESIKLADIVKASEEEVLYLENQGVEVKGSXLTA----------ITLGP 218
Query: 178 KGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSV 216
KG + VP ++V +DTTGAGDAF + LV +
Sbjct: 219 KGFRLIKNETVVDVPSYNVNPLDTTGAGDAFXAALLVGI 257
>pdb|1TZ6|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
pdb|1TZ6|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica Complexed With Aminoimidazole
Riboside And Atp Analog
Length = 339
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 5/222 (2%)
Query: 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLK 62
GDD+ G L + + N V + D +A+ V L +GER F + +P AD +
Sbjct: 73 LGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVS 132
Query: 63 DSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPSQD 122
+L +Q + F++ SI L P R G + +D N+R +W + D
Sbjct: 133 PQDLPP--FRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVNLRSKMWGNTD 190
Query: 123 AARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGY 182
+ I A + KVS DE+ L+ G + D L +++ GA G
Sbjct: 191 EIPELIARSAALASICKVSADELCQLS--GASHWQDARYYLRDLGCDTTIISLGADGALL 248
Query: 183 FTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFN 224
T + + P V +DTTGAGDAFVG L ++++ AN ++
Sbjct: 249 ITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR-ANCWD 289
>pdb|1TYY|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TYY|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase From
Salmonella Enterica
pdb|1TZ3|A Chain A, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
pdb|1TZ3|B Chain B, Crystal Structure Of Aminoimidazole Riboside Kinase
Complexed With Aminoimidazole Riboside
Length = 339
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 100/222 (45%), Gaps = 5/222 (2%)
Query: 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLK 62
GDD+ G L + + N V + D +A+ V L +GER F + +P AD +
Sbjct: 73 LGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYLVHPGADTYVS 132
Query: 63 DSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPSQD 122
+L +Q + F++ SI L P R G + +D N+R W + D
Sbjct: 133 PQDLPP--FRQYEWFYFSSIGLTDRPAREACLEGARRXREAGGYVLFDVNLRSKXWGNTD 190
Query: 123 AARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGY 182
+ I A + KVS DE+ L+ G + D L +++ GA G
Sbjct: 191 EIPELIARSAALASICKVSADELCQLS--GASHWQDARYYLRDLGCDTTIISLGADGALL 248
Query: 183 FTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFN 224
T + + P V +DTTGAGDAFVG L ++++ AN ++
Sbjct: 249 ITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSR-ANCWD 289
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 94/210 (44%), Gaps = 3/210 (1%)
Query: 4 GDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKD 63
G+D FG + ++ L + V G+ T AFVT +G+R+F+F +A L
Sbjct: 61 GNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSA 120
Query: 64 SELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPSQDA 123
++ ++K FH SL S G ++S+DPN+R +
Sbjct: 121 QHVDENILKDCTHFHIXGSSLFSFHXVDAVKKAVTIVKANGGVISFDPNIRKEXLDIPE- 179
Query: 124 ARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183
RD + + D+ S+ EV L+ E+ + + +K ++V G +G Y+
Sbjct: 180 XRDALHFVLELTDIYXPSEGEVLLLSPHSTPER--AIAGFLEEGVKEVIVKRGNQGASYY 237
Query: 184 TKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
+ + V + V+ +D TGAGD F G+++
Sbjct: 238 SANEQFHVESYPVEEVDPTGAGDCFGGAWI 267
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 11/217 (5%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVT--LKKNGEREFMFYRNPSADM 59
+ G+DEFG ++ + + T + DN + T + F+ + E ++YR SA
Sbjct: 55 RVGNDEFGKNIIEYSRAQGIDTSHIKVDNESFTGIYFIQRGYPIPMKSELVYYRKGSAGS 114
Query: 60 LLKDSELNMGLIKQAKIFHYGSISL-ISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLW 118
L ++N ++ +++ H I+L IS+ + S D N+R LW
Sbjct: 115 RLSPEDINENYVRNSRLVHSTGITLAISDNAKEAVIKAFELAKSR----SLDTNIRPKLW 170
Query: 119 PSQDAARDGIKSIWNHADL-IKVSD-DEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYG 176
S + A++ I SI D+ + ++D D+ L D D+ +K+LL G
Sbjct: 171 SSLEKAKETILSILKKYDIEVLITDPDDTKILLDVTDP--DEAYRKYKELGVKVLLYKLG 228
Query: 177 AKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
+KG + K + V D TGAGDA G+F+
Sbjct: 229 SKGAIAYKDNVKAFKDAYKVPVEDPTGAGDAMAGTFV 265
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 13/217 (5%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNG--EREFMFYRNPSADM 59
+ GDDEFG+ + L+ V + D A T + F+ + E ++YR SA
Sbjct: 55 KVGDDEFGYNAIEWLRGQGVDVSHMKIDPSAPTGIFFIQRHYPVPLKSESIYYRKGSAGS 114
Query: 60 LLKDSELNMGLIKQAKIFHYGSISL-ISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLW 118
L +++ +K A + H I+L IS + S+D N+RL LW
Sbjct: 115 KLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNR----SFDTNIRLKLW 170
Query: 119 PSQDAARDGIK--SIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYG 176
+++A R+ +K S ++ LI +DD L G+++ D + + D +++++ G
Sbjct: 171 SAEEAKREILKLLSKFHLKFLITDTDDSKIIL---GESDPDKAAKA-FSDYAEIIVMKLG 226
Query: 177 AKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
KG + K G+ V D TGAGDA G+FL
Sbjct: 227 PKGAIVYYDGKKYYSSGYQVPVEDVTGAGDALGGTFL 263
>pdb|2QCV|A Chain A, Crystal Structure Of A Putative
5-Dehydro-2-Deoxygluconokinase (Iolc) From Bacillus
Halodurans C-125 At 1.90 A Resolution
Length = 332
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHA-RTALAFVTLKKNGEREFMFYRNPSADML 60
+ DD+ G + + + V T + D +T LAF +K E + YR AD+
Sbjct: 66 KIADDQHGRFIESYXRGVGVDTSNLVVDQEGHKTGLAFTEIKSPEECSILXYRQDVADLY 125
Query: 61 LKDSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPS 120
L E+N I+++K+ +L P R V + ++ + R W +
Sbjct: 126 LSPEEVNEAYIRRSKLLLVSGTALSKSPSREAVLKAIRLAKRNDVKVVFELDYRPYSWET 185
Query: 121 QDAARDGIKSIWNHADLIKVSDDEVNFL---TKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177
+ + +D++ + +E + L T+ GD D+ + L+ + +L+++ +G
Sbjct: 186 PEETAVYYSLVAEQSDIVIGTREEFDVLENRTEKGD--NDETIRYLFKHSPELIVIKHGV 243
Query: 178 KGCGYFTKKFKG-RVPGFSVKTIDTTGAGDAFVGSFLVSV 216
+G +TK + R + K + T GAGD++ +FL ++
Sbjct: 244 EGSFAYTKAGEAYRGYAYKTKVLKTFGAGDSYASAFLYAL 283
>pdb|4DU5|A Chain A, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|B Chain B, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|C Chain C, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
pdb|4DU5|D Chain D, Crystal Structure Of Pfkb Protein From Polaromonas Sp.
Js666
Length = 336
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 5/211 (2%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNG-EREFMFYRNPSADML 60
+ G D G L+ + V D +T F +G + ++R SA
Sbjct: 80 RLGTDSXGRYLLAAXAAEGIDCSHVVCDATQKTGFQFKGKVTDGSDPPVEYHRKGSAASH 139
Query: 61 LKDSELNMGLIKQAKIFH-YGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWP 119
++++ + A+ H G IS G +S+DPN+R LW
Sbjct: 140 XGVADIDEAWLLSARHLHATGVFPAISATTLPAARKTXDLXRAAGRSVSFDPNLRPTLWA 199
Query: 120 SQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKG 179
+ + RD I + AD + +E FLT G+ + V KL++V GA+G
Sbjct: 200 TPELXRDAINDLATRADWVLPGXEEGRFLT--GETTPEGVARFYRQLGAKLVVVKLGAEG 257
Query: 180 CGYFTKKFKGRVPGFSV-KTIDTTGAGDAFV 209
+ + GRV GF V + +DT GAGD F
Sbjct: 258 AYFDGEAGSGRVAGFPVAEVVDTVGAGDGFA 288
>pdb|3PL2|A Chain A, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|B Chain B, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|C Chain C, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
pdb|3PL2|D Chain D, Crystal Structure Of A 5-Keto-2-Deoxygluconokinase
(Ncgl0155, Cgl0158) From Corynebacterium Glutamicum Atcc
13032 Kitasato At 1.89 A Resolution
Length = 319
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 4/212 (1%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSA-DML 60
+ G+D FG L+ L++ V + V D +T + F + + FYR P A D+
Sbjct: 63 RVGNDPFGEYLLAELERLGVDNQYVATDQTFKTPVTFCEIFPPDDFPLYFYREPKAPDLN 122
Query: 61 LKDSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPS 120
++ +++++ +++A I + EP R + +D + R W S
Sbjct: 123 IESADVSLDDVREADILWFTLTGFSEEPSRGTHREILTTRANRRHTI-FDLDYRPXFWES 181
Query: 121 QDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGC 180
+ A + H+ + + +E G+ E + +L ++L +V G KG
Sbjct: 182 PEEATKQAEWALQHSTVAVGNKEECEIAV--GETEPERAGRALLERGVELAIVKQGPKGV 239
Query: 181 GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSF 212
TK VP F V I+ GAGDAF G+
Sbjct: 240 XAXTKDETVEVPPFFVDVINGLGAGDAFGGAL 271
>pdb|1V19|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V19|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
pdb|1V1A|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1A|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound 2-Keto-3-Deoxygluconate And Adp
pdb|1V1B|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1B|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
With Bound Atp
pdb|1V1S|A Chain A, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|B Chain B, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|C Chain C, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|D Chain D, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|E Chain E, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
pdb|1V1S|F Chain F, 2-Keto-3-Deoxygluconate Kinase From Thermus Thermophilus
(Crystal Form 2)
Length = 309
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 20/218 (9%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKN-----GEREFMFYRNPS 56
+ G+DE G M+ + ++ EGV H R A F L G+ +YR S
Sbjct: 55 RVGEDELGAMV-----EERLRAEGVDL-THFRRAPGFTGLYLREYLPLGQGRVFYYRKGS 108
Query: 57 ADMLLKDSELNMGLIKQAKIFHYGSIS-LISEPCRSXXXXXXXXXXXXGVLLSYDPNVRL 115
A L + ++ + H I+ +S R+ GV +S D N R
Sbjct: 109 AGSALAPGAFDPDYLEGVRFLHLSGITPALSPEARAFSLWAMEEAKRRGVRVSLDVNYRQ 168
Query: 116 PLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTY 175
LW S + AR ++ DL+ +S++E L G E+ +S LK
Sbjct: 169 TLW-SPEEARGFLERALPGVDLLFLSEEEAELLF--GRVEEALRALSAPEVVLK-----R 220
Query: 176 GAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
GAKG F + F+V+ +D GAGDAF +L
Sbjct: 221 GAKGAWAFVDGRRVEGSAFAVEAVDPVGAGDAFAAGYL 258
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLL 61
+ G D FG+ + LKQN++ TE A T A + + G+ + A++LL
Sbjct: 83 KVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIVAG--ANLLL 140
Query: 62 KDSELNMG--LIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWP 119
+L +I +AK+ C+ L P L
Sbjct: 141 NTEDLRAAANVISRAKVMV----------CQ----------------LEITPATSLEALT 174
Query: 120 SQDAARDGIKSIWNHA--------------DLIKVSDDEVNFLTK---GGDAEKDDVVMS 162
A R G+K+++N A D+ ++ E LT G A+ + +
Sbjct: 175 M--ARRSGVKTLFNPAPAIADLDPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALV 232
Query: 163 LWHDNLKLLLVTYGAKGCGYF--TKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDA 220
L +++++T GA+GC T+ +P VK +DTTGAGD+FVG+ +A
Sbjct: 233 LLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAYYP 292
Query: 221 NI 222
N+
Sbjct: 293 NL 294
>pdb|3LHX|A Chain A, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
pdb|3LHX|B Chain B, Crystal Structure Of A Ketodeoxygluconokinase (Kdgk) From
Shigella Flexneri
Length = 319
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 11/221 (4%)
Query: 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLK 62
G D F ++ NV T + L ++ GER F ++RN +A
Sbjct: 56 LGTDSFSQQXLDAWHGENVDTSLTQRXENRLPGLYYIETDSTGERTFYYWRNEAAAKFWL 115
Query: 63 DSELNMGLIKQAKIFHY-----GSISLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPL 117
SE + + ++ F Y S++++S R G + +D N R L
Sbjct: 116 ASEQSAAICEELANFDYLYLSGISLAILSPTSREKLLSLLRECRAKGGKVIFDNNYRPRL 175
Query: 118 WPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177
W S++ + + D+ ++ D+ + L G +DV+ + +K ++V GA
Sbjct: 176 WASKEETQQVYQQXLECTDIAFLTLDDEDAL--WGQQPVEDVIARTHNAGVKEVVVKRGA 233
Query: 178 KGC-GYFTKKFKGRVPGFSV---KTIDTTGAGDAFVGSFLV 214
C + VP + K IDTT AGD+F +L
Sbjct: 234 DSCLVSIAGEALVDVPAVKLPKEKVIDTTAAGDSFSAGYLA 274
>pdb|1RK2|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|B Chain B, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|C Chain C, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RK2|D Chain D, E. Coli Ribokinase Complexed With Ribose And Adp, Solved
In Space Group P212121
pdb|1RKA|A Chain A, The Apo Form Of E. Coli Ribokinase
pdb|1RKS|A Chain A, E. Coli Ribokinase In Complex With D-Ribose
pdb|1GQT|A Chain A, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|B Chain B, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|C Chain C, Activation Of Ribokinase By Monovalent Cations
pdb|1GQT|D Chain D, Activation Of Ribokinase By Monovalent Cations
pdb|1RKD|A Chain A, E. Coli Ribokinase Complexed With Ribose And Adp
Length = 309
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 22/221 (9%)
Query: 4 GDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKD 63
GDD G + L +N+ V T +A + + NGE E + + A+ L
Sbjct: 65 GDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV--NGEGENVIGIHAGANAALSP 122
Query: 64 SELNMGLIKQAKIFHYGSISL-ISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPLWPSQD 122
+ + ++ +I + ++ + + P S +++ + L P+
Sbjct: 123 ALVEA---QRERIANASALLMQLESPLESVMAAAK---------IAHQNKTIVALNPA-- 168
Query: 123 AARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDD----VVMSLWHDNLKLLLVTYGAK 178
AR+ + D+I ++ E LT G E D+ L ++ +L+T G++
Sbjct: 169 PARELPDELLALVDIITPNETEAEKLT-GIRVENDEDAAKAAQVLHEKGIRTVLITLGSR 227
Query: 179 GCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219
G RVPGF V+ +DT AGD F G+ + ++ ++
Sbjct: 228 GVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEE 268
>pdb|2C49|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C49|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
pdb|2C4E|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii
Nucleoside Kinase - An Archaeal Member Of The Ribokinase
Family
Length = 302
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 106 LLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWH 165
L+S+DP LP + +++ + I H + + ++ E + + E DD +
Sbjct: 156 LVSFDPGQDLPQY-----SKEMLLEIIEHTNFLFMNKHEFERASNLLNFEIDDYL----- 205
Query: 166 DNLKLLLVTYGAKGCGYFTKKFKGRVPGFSV-KTIDTTGAGDAFVGSFLVSVAK 218
+ + L+VT G+KG +TK K +P K ID TGAGD++ FL + K
Sbjct: 206 ERVDALIVTKGSKGSVIYTKDKKIEIPCIKAGKVIDPTGAGDSYRAGFLSAYVK 259
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 9/219 (4%)
Query: 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADM-LL 61
GDD + + + G+ L +TL++ GER F ++R SA L
Sbjct: 75 IGDDALSQQMRAAMSAAGIDGGGLRVIPGRTVGLYLITLEQ-GERSFAYWRGQSAARELA 133
Query: 62 KDSELNMGLIKQAKIFHYGSISL-ISEPC-RSXXXXXXXXXXXXGVLLSYDPNVRLPLWP 119
D++ + +A + ++ I+L I + C R+ G +++DPN+R LW
Sbjct: 134 GDADALAAAMARADVVYFSGITLAILDQCGRATLLRALAQARATGRTIAFDPNLRPRLWA 193
Query: 120 SQDAARDGIKSIWNHADLIKVS-DDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAK 178
+ I +D+ S +DE + GDA D ++ ++V G
Sbjct: 194 GTGEMTETIMQGAAVSDIALPSFEDEAAWF---GDAGPDATADRYARAGVRSVVVKNGPH 250
Query: 179 GCGYFTKKFKGRVPGFSVKTI-DTTGAGDAFVGSFLVSV 216
+ +GRVP V + DTT AGD+F L SV
Sbjct: 251 AVHFLQDGRRGRVPVPPVAQVVDTTAAGDSFNAGLLDSV 289
>pdb|2QHP|A Chain A, Crystal Structure Of Fructokinase (Np_810670.1) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 296
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 13/218 (5%)
Query: 4 GDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKD 63
G+DE G + + K+ +K + D T VTL G + + D +
Sbjct: 48 GNDELGDEIXEVFKEKQLKNQIERVDYP--TGTVQVTLDDEGVPCYEIKEGVAWDNIPFT 105
Query: 64 SELNMGLIKQAKIFHYGSISLISEPCRSXXXX-XXXXXXXXGVLLSYDPNVRLPLWPSQD 122
EL L + +GS++ +E R+ G L +D N+R + +++
Sbjct: 106 DELKR-LALNTRAVCFGSLAQRNEVSRATINRFLDTXPDIDGQLKIFDINLRQDFY-TKE 163
Query: 123 AARDGIKSIWNHADLIKVSDDEVNFLTKG----GDAEKDDVVMSLWHDNLKLLLVTYGAK 178
R+ K +++K++D+E+ +++ G +D + L NLK L++T G
Sbjct: 164 VLRESFK----RCNILKINDEELVTISRXFGYPGIDLQDKCWILLAKYNLKXLILTCGIN 219
Query: 179 GCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSV 216
G FT V DT GAGD+F +F S+
Sbjct: 220 GSYVFTPGVVSFQETPKVPVADTVGAGDSFTAAFCASI 257
>pdb|3RY7|A Chain A, Crystal Sructure Of Sa239
Length = 304
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 168 LKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
+K +L+T G +G + TK + + V IDTT AGD F+G+F+
Sbjct: 216 IKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFV 261
>pdb|1VM7|A Chain A, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
pdb|1VM7|B Chain B, Crystal Structure Of Ribokinase (Tm0960) From Thermotoga
Maritima At 2.15 A Resolution
Length = 311
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 123 AARDGI-KSIWNHADLIKVSDDEVNFLTK---GGDAEKDDVVMSLWHDNLKLLLVTYGAK 178
A GI + I+ + D + ++ E+ L+K G + +K ++V G K
Sbjct: 171 APAQGINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDK 230
Query: 179 GCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDAN 221
G K K P F VK +DTT AGD F G+F V++++ N
Sbjct: 231 GVLLVNKNEKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKN 273
>pdb|3KD6|A Chain A, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
pdb|3KD6|B Chain B, Crystal Structure Of Nucleoside Kinase From Chlorobium
Tepidum In Complex With Amp
Length = 313
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 128 IKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKF 187
+K + D+ V+D E L+ GD + K L++ G G FT
Sbjct: 162 LKKVLARVDVFIVNDSEARLLS--GDPNLVKTARIIREXGPKTLIIKKGEHGALLFTDNG 219
Query: 188 KGRVPGFSVKTI-DTTGAGDAFVGSFLVSVAKDANIFNVKFR 228
P F +++I D TGAGD F G F+ +A+ N + R
Sbjct: 220 IFAAPAFPLESIYDPTGAGDTFAGGFIGHLARCGNTSEAEXR 261
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 13/224 (5%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLL 61
+ G D G +++ ++ N+ + + D T++ + ++GER F+ RN S L
Sbjct: 65 RIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLVTEDGERTFVTNRNGSLWKLN 124
Query: 62 KDSELNMGLIKQAKIFHYGSISLISEPCRSXXXXXXXXXXXXG--VLLSYDPNVRLPLWP 119
D +++ QAK+ SI + P ++ D + P
Sbjct: 125 ID-DVDFARFSQAKLLSLASI--FNSPLLDGKALTEIFTQAKARQXIICADX-----IKP 176
Query: 120 SQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKG 179
+ D I ++ D + + E LT G D++ +K +++ G G
Sbjct: 177 RLNETLDDICEALSYVDYLFPNFAEAKLLT--GKETLDEIADCFLACGVKTVVIKTGKDG 234
Query: 180 CGYFTKKFKGRVPGFS-VKTIDTTGAGDAFVGSFLVSVAKDANI 222
C +VP + + IDT GAGD F F+ ++ + N+
Sbjct: 235 CFIKRGDXTXKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNL 278
>pdb|3HIC|A Chain A, The Crystal Structure Of Phosphofructokinase(Lin2199)from
Listeria Innocua
pdb|3IE7|A Chain A, The Crystal Structure Of Phosphofructokinase (Lin2199)
From Listeria Innocua In Complex With Atp At 1.6a
pdb|3JUL|A Chain A, Crystal Structure Of Listeria Innocua
D-Tagatose-6-Phosphate Kinase Bound With Substrate
Length = 320
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 130 SIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKG--CGYFTKKF 187
++ D IK ++DEV + ++ + +L + + L+V+ GAKG C + K +
Sbjct: 178 AVEXGVDFIKPNEDEVIAILDEKTNSLEENIRTLA-EKIPYLVVSLGAKGSICAHNGKLY 236
Query: 188 KGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANI 222
+ P V+ + TGAGD FVG+F+ +A + I
Sbjct: 237 QVIPP--KVQERNDTGAGDVFVGAFIAGLAXNXPI 269
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 136 DLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKG--CGYFTKKFKGRVPG 193
D IK ++DEV + ++ + +L + + L+V+ GAKG C + K ++ P
Sbjct: 184 DFIKPNEDEVIAILDEKTNSLEENIRTLA-EKIPYLVVSLGAKGSICAHNGKLYQVIPP- 241
Query: 194 FSVKTIDTTGAGDAFVGSFLVSVAKDANI 222
V+ + TGAGD FVG+F+ +A + I
Sbjct: 242 -KVQERNDTGAGDVFVGAFIAGLAMNMPI 269
>pdb|3B1R|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
pdb|3B1R|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Amp-Mg-Amp
Length = 320
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 104 GVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSL 163
GV +DP LPL+ D A ++ A I V+D E + +D++
Sbjct: 168 GVPFIFDPGQGLPLF---DGAT--LRRSIELATYIAVNDYEAKLVCDKTGWSEDEIA--- 219
Query: 164 WHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSV-KTIDTTGAGDAFVGSFLVSV 216
++ L++T G G + ++P + ID TG GDAF G L +
Sbjct: 220 --SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGI 271
>pdb|3B1N|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1N|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Mizoribine
pdb|3B1O|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1O|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Ligand-Free Form
pdb|3B1P|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Adp-Inosine
pdb|3B1Q|A Chain A, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|B Chain B, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|C Chain C, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|D Chain D, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|E Chain E, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
pdb|3B1Q|F Chain F, Structure Of Burkholderia Thailandensis Nucleoside Kinase
(Bthnk) In Complex With Inosine
Length = 326
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 104 GVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSL 163
GV +DP LPL+ D A ++ A I V+D E + +D++
Sbjct: 160 GVPFIFDPGQGLPLF---DGAT--LRRSIELATYIAVNDYEAKLVCDKTGWSEDEIA--- 211
Query: 164 WHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSV-KTIDTTGAGDAFVGSFLVSV 216
++ L++T G G + ++P + ID TG GDAF G L +
Sbjct: 212 --SRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGI 263
>pdb|3GO6|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO6|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose And Amp-Pnp
pdb|3GO7|A Chain A, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
pdb|3GO7|B Chain B, Crystal Structure Of M. Tuberculosis Ribokinase (Rv2436)
In Complex With Ribose
Length = 310
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 164 WHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVG 210
W ++T G +G Y VP +V +DT GAGD F G
Sbjct: 206 WPSPPTHFVITLGVRGARYVGADGVFEVPAPTVTPVDTAGAGDVFAG 252
>pdb|3I3Y|A Chain A, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|B Chain B, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|C Chain C, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3I3Y|D Chain D, Crystal Structure Of Ribokinase In Complex With D-Ribose
From Klebsiella Pneumoniae
pdb|3IKH|A Chain A, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|B Chain B, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|C Chain C, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
pdb|3IKH|D Chain D, Crystal Structure Of Ribokinase In Complex With Atp And
Glycerol In The Active Site From Klebsiella Pneumoniae
Length = 299
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 131 IWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGR 190
+W D+ V++ E L G +K L++T GA G + +
Sbjct: 174 LWPLIDIAVVNESEAELLQPYG---------------VKTLVITQGAAGAWLVQEGQRQF 218
Query: 191 VPGFSVKTIDTTGAGDAF 208
P + +DTTGAGD F
Sbjct: 219 CPAVPAEALDTTGAGDTF 236
>pdb|2RBC|A Chain A, Crystal Structure Of A Putative Ribokinase From
Agrobacterium Tumefaciens
Length = 343
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 4 GDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFM-FY 52
GDDE G ++ L ++ + T G AR+AL+ + + GER + FY
Sbjct: 90 GDDETGTRILRDLSESGIDTSGXTVAPGARSALSTIIIDNRGERLIVPFY 139
>pdb|3UBO|A Chain A, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
pdb|3UBO|B Chain B, The Crystal Structure Of Adenosine Kinase From
Sinorhizobium Meliloti
Length = 354
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 18/218 (8%)
Query: 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLL 61
+ DD+ G + + ++ V + D H TA + + + ++GER Y ++
Sbjct: 82 KVADDQLGEIFTHDIRAQGVHFQTKPLDGHPPTARSXIFVTEDGERSXNTYLGACVELGP 141
Query: 62 KDSELNMGLIKQAKIFHYGSI----SLISEPCRSXXXXXXXXXXXXGVLLSYDPNVRLPL 117
+D E ++ + Q+K+ ++ + R LS V
Sbjct: 142 EDVEDDV--VAQSKVTYFEGYLWDPPRAKDAIREAARIAHAHGRETAXTLSDSFCVHRYR 199
Query: 118 WPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177
+ R G D++ + E L + E D + L + KL VT
Sbjct: 200 SEFLELXRSGT------VDIVFANRQEALALY---ETEDFDRALELLARDCKLAAVTLSE 250
Query: 178 KGCGYFTKKFKGRVPGFSV--KTIDTTGAGDAFVGSFL 213
+G + RV G SV + +DTTGAGD + FL
Sbjct: 251 EGSVVVRGAERVRV-GASVLEQVVDTTGAGDLYAAGFL 287
>pdb|2ABS|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With Amp-Pcp
pdb|2A9Y|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine
pdb|2A9Z|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With N6-Dimethyladenosine And Amp-Pcp
pdb|2AA0|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside
pdb|2AB8|A Chain A, Crystal Structure Of T. Gondii Adenosine Kinase Complexed
With 6-Methylmercaptopurine Riboside And Amp-Pcp
Length = 383
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 5/101 (4%)
Query: 123 AARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDD-VVMSLWHDNLKLLLVTYGAKGCG 181
AA S N ++V + LT G + VVM+ H+ + + G
Sbjct: 258 AAEKTALSTANKEHAVEVCTGALRLLTAGQNTSATKLVVMTRGHNPV----IAAEQTADG 313
Query: 182 YFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANI 222
G + K +DT GAGDAFVG FL ++++ +
Sbjct: 314 TVVVHEVGVPVVAAEKIVDTNGAGDAFVGGFLYALSQGKTV 354
>pdb|1DGM|A Chain A, Crystal Structure Of Adenosine Kinase From Toxoplasma
Gondii
Length = 363
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 197 KTIDTTGAGDAFVGSFLVSVAKDANI 222
K +DT GAGDAFVG FL ++++ +
Sbjct: 309 KIVDTNGAGDAFVGGFLYALSQGKTV 334
>pdb|1BX4|A Chain A, Structure Of Human Adenosine Kinase At 1.50 Angstroms
pdb|2I6A|A Chain A, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|B Chain B, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|C Chain C, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6A|D Chain D, Human Adenosine Kinase In Complex With 5'-Deoxy-5-
Iodotubercidin
pdb|2I6B|A Chain A, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
pdb|2I6B|B Chain B, Human Adenosine Kinase In Complex With An Acetylinic
Inhibitor
Length = 345
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 199 IDTTGAGDAFVGSFLVSVAKD 219
IDT GAGDAFVG FL + D
Sbjct: 293 IDTNGAGDAFVGGFLSQLVSD 313
>pdb|1LII|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
2 And Amp-Pcp
pdb|1LIJ|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Prodrug 2
7-Iodotubercidin And Amp-Pcp
pdb|1LIK|A Chain A, Structure Of T. Gondii Adenosine Kinase Bound To Adenosine
Length = 363
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 197 KTIDTTGAGDAFVGSFLVSVAKDANI 222
K +DT GAGDAFVG FL +++ +
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKTV 334
>pdb|1LIO|A Chain A, Structure Of Apo T. Gondii Adenosine Kinase
Length = 363
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 197 KTIDTTGAGDAFVGSFLVSVAKDANI 222
K +DT GAGDAFVG FL +++ +
Sbjct: 309 KIVDTNGAGDAFVGGFLYGLSQGKTV 334
>pdb|3UQE|A Chain A, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
pdb|3UQE|B Chain B, Crystal Structure Of The Phosphofructokinase-2 Mutant Y23d
From Escherichia Coli
Length = 309
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 136 DLIKVSDDEVNFLTKGGDAEKDDVVMSLWH----DNLKLLLVTYGAKGC-GYFTKKFKGR 190
+L+K + E++ L + DDV + K ++V+ G +G G ++
Sbjct: 182 ELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQV 241
Query: 191 VPGFSVKTIDTTGAGDAFVGSFLVSVAKDANI 222
VP VK+ T GAGD+ VG+ + +A++A++
Sbjct: 242 VP-PPVKSQSTVGAGDSMVGAMTLKLAENASL 272
>pdb|3CQD|A Chain A, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3CQD|B Chain B, Structure Of The Tetrameric Inhibited Form Of
Phosphofructokinase-2 From Escherichia Coli
pdb|3N1C|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3N1C|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Fructose-6-Phosphate
pdb|3UMO|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMO|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Potassium
pdb|3UMP|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UMP|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Cesium And Atp
pdb|3UQD|A Chain A, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|B Chain B, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|C Chain C, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
pdb|3UQD|D Chain D, Crystal Structure Of The Phosphofructokinase-2 From
Escherichia Coli In Complex With Substrates And Products
Length = 309
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 136 DLIKVSDDEVNFLTKGGDAEKDDVVMSLWH----DNLKLLLVTYGAKGC-GYFTKKFKGR 190
+L+K + E++ L + DDV + K ++V+ G +G G ++
Sbjct: 182 ELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKAKRVVVSLGPQGALGVDSENCIQV 241
Query: 191 VPGFSVKTIDTTGAGDAFVGSFLVSVAKDANI 222
VP VK+ T GAGD+ VG+ + +A++A++
Sbjct: 242 VP-PPVKSQSTVGAGDSMVGAMTLKLAENASL 272
>pdb|3LOO|A Chain A, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|B Chain B, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
pdb|3LOO|C Chain C, Crystal Structure Of Anopheles Gambiae Adenosine Kinase In
Complex With P1,P4-Di(Adenosine-5) Tetraphosphate
Length = 365
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 197 KTIDTTGAGDAFVGSFLVSVAKDANI 222
+ +DT GAGDAFVG FL + + +
Sbjct: 308 QMVDTNGAGDAFVGGFLAQLLQSRTV 333
>pdb|2PKF|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKF|B Chain B, Crystal Structure Of M Tuberculosis Adenosine Kinase (Apo)
pdb|2PKK|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With 2- Fluro Adenosine
pdb|2PKN|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Amp-Pcp (Non-Hydrolyzable Atp Analog)
pdb|2PKM|A Chain A, Crystal Structure Of M Tuberculosis Adenosine Kinase
Complexed With Adenosine
Length = 334
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 119 PSQDAAR---DGIKSIWNHADLIKVSDDEVNFL-TKGGDAEKDDVVMSLWHDNLKLLLVT 174
PSQ AR + I+ + N A + +D E + L +K G +E D VM+ + L + T
Sbjct: 180 PSQQLARLSGEEIRRLVNGAAYLFTNDYEWDLLLSKTGWSEAD--VMA----QIDLRVTT 233
Query: 175 YGAKGCGYF----TKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213
G KG T G VP D TG GDAF FL
Sbjct: 234 LGPKGVDLVEPDGTTIHVGVVP--ETSQTDPTGVGDAFRAGFL 274
>pdb|1BSW|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
7.5
Length = 197
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 131 IWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVT 174
IW+ DLI V N L G+ D++ + HDN +LL T
Sbjct: 55 IWSGKDLIDVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTAT 98
>pdb|1BUD|A Chain A, Acutolysin A From Snake Venom Of Agkistrodon Acutus At Ph
5.0
Length = 197
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 131 IWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVT 174
IW+ DLI V N L G+ D++ + HDN +LL T
Sbjct: 55 IWSGKDLIDVEASAGNTLKSFGEWRAKDLIHRISHDNAQLLTAT 98
>pdb|1ND1|A Chain A, Amino Acid Sequence And Crystal Structure Of Bap1, A
Metalloproteinase From Bothrops Asper Snake Venom That
Exerts Multiple Tissue-Damaging Activities
Length = 202
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 131 IWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLL 171
+W+ DLIKV D L G+ + D++ + HD+ +LL
Sbjct: 58 VWSKQDLIKVQKDSSKTLKSFGEWRERDLLPRISHDHAQLL 98
>pdb|2W12|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W13|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W14|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
pdb|2W15|A Chain A, High-Resolution Crystal Structure Of The P-I Snake Venom
Metalloproteinase Bap1 In Complex With A Peptidomimetic:
Insights Into Inhibitor Binding
Length = 202
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 131 IWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLL 171
+W+ DLIKV D L G+ + D++ + HD+ +LL
Sbjct: 58 VWSKQDLIKVQKDSSKTLKSFGEWRERDLLPRISHDHAQLL 98
>pdb|3MGW|A Chain A, Thermodynamics And Structure Of A Salmon Cold-Active
Goose-T Lysozyme
Length = 181
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 112 NVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLW 164
+ P+WP + + GI S +N D + + ++ T GGD D V S W
Sbjct: 124 QAKFPVWPKEHQLKGGI-SAYNAGDKNVRTYERMDVGTTGGDYSNDVVARSQW 175
>pdb|1BVP|1 Chain 1, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|2 Chain 2, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|3 Chain 3, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|4 Chain 4, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|5 Chain 5, The Crystal Structure Of Bluetongue Virus Vp7
pdb|1BVP|6 Chain 6, The Crystal Structure Of Bluetongue Virus Vp7
Length = 349
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 15 ILKQNNVKTEGVCFDNHARTALAFVTLKKN--GEREFMFYRNPSADMLLKDSELNMGLIK 72
+L+ N ++ G+ + + L VT++ +R MF+ DM+L + +N+G I
Sbjct: 24 VLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFM--CLDMMLSAAGINVGPIS 81
Query: 73 QAKIFHYGSISLISEP 88
H +I +++ P
Sbjct: 82 PDYTQHMATIGVLATP 97
>pdb|4G9S|A Chain A, Crystal Structure Of Escherichia Coli Plig In Complex With
Atlantic Salmon G-Type Lysozyme
Length = 187
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 112 NVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLW 164
+ P+WP + + GI S +N D + + ++ T GGD D V S W
Sbjct: 130 QAKFPVWPKEHQLKGGI-SAYNAGDKNVRTYERMDVGTTGGDYSNDVVARSQW 181
>pdb|2BTV|P Chain P, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|C Chain C, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|D Chain D, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|Q Chain Q, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|E Chain E, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|F Chain F, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|R Chain R, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|G Chain G, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|H Chain H, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|S Chain S, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|I Chain I, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|J Chain J, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|T Chain T, Atomic Model For Bluetongue Virus (Btv) Core
Length = 349
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 15 ILKQNNVKTEGVCFDNHARTALAFVTLKKN--GEREFMFYRNPSADMLLKDSELNMGLIK 72
+L+ N ++ G+ + + L VT++ +R MF+ DM+L + +N+G I
Sbjct: 24 VLEANVMEILGIAINRYNGLTLRGVTMRPTSLAQRNEMFFM--CLDMMLSAAGINVGPIS 81
Query: 73 QAKIFHYGSISLISEP 88
H +I +++ P
Sbjct: 82 PDYTQHMATIGVLATP 97
>pdb|3GBO|A Chain A, Crystal Structure Of Bmoompalpha-I, A Non-Hemorrhagic
Metalloproteinase Isolated From Bothrops Moojeni Snake
Venom
Length = 200
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 131 IWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLL 171
+W+ DLI V D L G+ + D++ + HDN +LL
Sbjct: 56 VWSKKDLINVQKDSRETLKSFGEWRERDLLPRISHDNAQLL 96
>pdb|2XTB|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Activator
pdb|3OTX|A Chain A, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
pdb|3OTX|B Chain B, Crystal Structure Of Trypanosoma Brucei Rhodesiense
Adenosine Kinase Complexed With Inhibitor Ap5a
Length = 347
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 197 KTIDTTGAGDAFVGSFLVSVA 217
K ID GAGDAF+G FL + A
Sbjct: 292 KVIDMNGAGDAFMGGFLSAYA 312
>pdb|2XDV|A Chain A, Crystal Structure Of The Catalytic Domain Of Flj14393
Length = 442
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 113 VRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNL 168
+R PL + D +K IWN + I V D L D EK+ +V+SLW + L
Sbjct: 394 LRFPL-----SHLDALKQIWN-SPAISVKD-----LKLTTDEEKESLVLSLWTECL 438
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 177
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 6 DEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGER 47
++FG ML+N N+ K F LA+ K NG+
Sbjct: 90 EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE 131
>pdb|2JG5|A Chain A, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
pdb|2JG5|B Chain B, Crystal Structure Of A Putative Phosphofructokinase From
Staphylococcus Aureus
Length = 306
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 122 DAARDGIKSIWN-HADLIKVSDDEVNFL---TKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177
DA ++ +S+ H IK + DE+ + T DA+ L + ++V+ G
Sbjct: 161 DAEKELAESVLPYHPLFIKPNKDELEVMFNTTVNSDADVIKYGRLLVDKGAQSVIVSLGG 220
Query: 178 KGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANI 222
G Y K+ + K ++T G+GD+ V + +A +I
Sbjct: 221 DGAIYIDKEISIKAVNPQGKVVNTVGSGDSTVAGMVAGIASGLSI 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,564,947
Number of Sequences: 62578
Number of extensions: 253707
Number of successful extensions: 656
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 66
length of query: 230
length of database: 14,973,337
effective HSP length: 96
effective length of query: 134
effective length of database: 8,965,849
effective search space: 1201423766
effective search space used: 1201423766
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)