Query 044512
Match_columns 230
No_of_seqs 111 out of 1274
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 03:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02323 probable fructokinase 100.0 4.3E-38 9.3E-43 255.6 23.0 226 1-227 64-296 (330)
2 PLN02967 kinase 100.0 2.1E-37 4.7E-42 261.2 23.1 226 1-227 264-516 (581)
3 cd01167 bac_FRK Fructokinases 100.0 8E-37 1.7E-41 244.6 22.0 224 1-227 49-279 (295)
4 PRK09434 aminoimidazole ribosi 100.0 3.4E-36 7.3E-41 242.0 22.7 223 1-227 49-278 (304)
5 cd01166 KdgK 2-keto-3-deoxyglu 100.0 6.7E-36 1.5E-40 239.1 22.8 225 1-227 52-278 (294)
6 cd01168 adenosine_kinase Adeno 100.0 2E-36 4.3E-41 244.1 19.9 218 1-227 76-294 (312)
7 PLN02543 pfkB-type carbohydrat 100.0 8.2E-36 1.8E-40 249.3 23.0 225 1-227 193-458 (496)
8 cd01944 YegV_kinase_like YegV- 100.0 8.2E-36 1.8E-40 238.1 21.7 219 1-228 56-276 (289)
9 COG0524 RbsK Sugar kinases, ri 100.0 4.7E-35 1E-39 236.0 21.9 219 1-228 58-279 (311)
10 PLN02813 pfkB-type carbohydrat 100.0 6.3E-35 1.4E-39 242.5 22.0 219 1-227 155-376 (426)
11 PLN02341 pfkB-type carbohydrat 100.0 1.1E-34 2.5E-39 244.1 22.4 225 1-228 140-379 (470)
12 PRK11142 ribokinase; Provision 100.0 1E-34 2.2E-39 233.6 20.2 210 1-227 60-274 (306)
13 PTZ00247 adenosine kinase; Pro 100.0 6E-35 1.3E-39 238.4 18.9 218 1-228 87-320 (345)
14 PLN02379 pfkB-type carbohydrat 100.0 8.8E-35 1.9E-39 238.0 19.1 215 1-227 108-326 (367)
15 cd01174 ribokinase Ribokinase 100.0 2.5E-34 5.5E-39 229.8 20.9 210 1-227 57-271 (292)
16 PTZ00292 ribokinase; Provision 100.0 1.7E-34 3.8E-39 234.1 19.6 215 1-227 73-295 (326)
17 PRK15074 inosine/guanosine kin 100.0 3.4E-34 7.3E-39 236.9 21.2 210 1-220 114-372 (434)
18 cd01942 ribokinase_group_A Rib 100.0 3.5E-33 7.7E-38 221.8 19.5 203 1-227 57-263 (279)
19 PF00294 PfkB: pfkB family car 100.0 1.3E-33 2.9E-38 226.5 16.3 218 1-228 57-280 (301)
20 TIGR02152 D_ribokin_bact ribok 100.0 8.5E-33 1.8E-37 221.1 20.3 211 1-227 52-267 (293)
21 cd01945 ribokinase_group_B Rib 100.0 1E-32 2.2E-37 219.8 19.6 206 1-227 57-263 (284)
22 cd01940 Fructoselysine_kinase_ 100.0 2.5E-32 5.5E-37 215.3 21.0 205 1-227 43-248 (264)
23 KOG2855 Ribokinase [Carbohydra 100.0 8.9E-33 1.9E-37 215.3 17.5 214 2-219 68-282 (330)
24 PLN02548 adenosine kinase 100.0 3.1E-32 6.8E-37 221.4 19.9 217 1-227 76-308 (332)
25 PRK09850 pseudouridine kinase; 100.0 1.6E-32 3.4E-37 221.4 17.9 212 1-228 61-278 (313)
26 cd01943 MAK32 MAK32 kinase. M 100.0 2.9E-32 6.3E-37 220.6 17.3 217 1-228 52-290 (328)
27 cd01172 RfaE_like RfaE encodes 100.0 5.8E-32 1.3E-36 217.4 18.6 209 1-227 60-279 (304)
28 PRK09954 putative kinase; Prov 100.0 5E-32 1.1E-36 222.4 18.1 212 1-228 114-331 (362)
29 cd01939 Ketohexokinase Ketohex 100.0 1.9E-31 4.2E-36 213.0 19.0 207 1-228 57-275 (290)
30 cd01947 Guanosine_kinase_like 100.0 3.9E-31 8.4E-36 208.6 19.1 193 1-227 57-249 (265)
31 TIGR03828 pfkB 1-phosphofructo 100.0 5.1E-31 1.1E-35 211.9 19.7 207 1-227 56-272 (304)
32 PRK10294 6-phosphofructokinase 100.0 1E-30 2.2E-35 210.6 19.1 209 1-228 59-278 (309)
33 TIGR02198 rfaE_dom_I rfaE bifu 100.0 4.2E-31 9.1E-36 213.4 16.9 211 1-228 68-288 (315)
34 TIGR01231 lacC tagatose-6-phos 100.0 7.3E-31 1.6E-35 211.4 18.1 211 1-227 56-274 (309)
35 PRK13508 tagatose-6-phosphate 100.0 1.4E-30 3E-35 209.8 19.0 209 1-228 57-275 (309)
36 cd01164 FruK_PfkB_like 1-phosp 100.0 1.8E-30 4E-35 207.3 19.5 207 1-227 57-273 (289)
37 cd01941 YeiC_kinase_like YeiC- 100.0 7.1E-31 1.5E-35 209.5 16.5 212 1-227 56-276 (288)
38 TIGR03168 1-PFK hexose kinase, 100.0 2E-30 4.2E-35 208.4 19.2 208 1-227 56-272 (303)
39 PRK09813 fructoselysine 6-kina 100.0 1.5E-30 3.2E-35 204.8 17.7 201 1-227 44-244 (260)
40 PRK09513 fruK 1-phosphofructok 100.0 4.9E-30 1.1E-34 206.8 20.4 208 1-227 60-276 (312)
41 COG1105 FruK Fructose-1-phosph 100.0 2.6E-29 5.6E-34 195.9 20.6 206 3-228 59-275 (310)
42 KOG2854 Possible pfkB family c 100.0 3E-28 6.6E-33 187.9 16.2 214 2-225 88-317 (343)
43 PRK11316 bifunctional heptose 100.0 1.4E-27 3.1E-32 202.6 17.9 208 1-227 71-285 (473)
44 cd01946 ribokinase_group_C Rib 100.0 2.1E-27 4.6E-32 188.5 17.4 202 1-221 45-249 (277)
45 cd01937 ribokinase_group_D Rib 100.0 2.9E-27 6.3E-32 185.5 17.9 199 1-227 45-243 (254)
46 PLN02630 pfkB-type carbohydrat 99.9 1E-25 2.2E-30 181.8 17.0 195 1-228 58-263 (335)
47 cd00287 ribokinase_pfkB_like r 99.9 5.2E-22 1.1E-26 149.7 17.9 135 74-217 58-196 (196)
48 COG2870 RfaE ADP-heptose synth 99.9 3E-21 6.6E-26 152.7 16.8 207 2-227 72-284 (467)
49 cd01173 pyridoxal_pyridoxamine 99.9 4.3E-21 9.3E-26 150.5 14.7 154 72-227 71-239 (254)
50 PRK05756 pyridoxamine kinase; 99.8 3.3E-20 7.2E-25 147.8 14.6 155 71-227 72-243 (286)
51 PRK12413 phosphomethylpyrimidi 99.8 5.9E-20 1.3E-24 143.9 13.6 136 91-227 83-230 (253)
52 PRK08176 pdxK pyridoxal-pyrido 99.8 1.7E-19 3.7E-24 143.0 15.9 154 71-228 86-255 (281)
53 PRK07105 pyridoxamine kinase; 99.8 8.3E-20 1.8E-24 145.3 14.1 153 73-228 75-244 (284)
54 TIGR00687 pyridox_kin pyridoxa 99.8 1.4E-19 3E-24 144.2 14.7 155 70-227 71-244 (286)
55 cd01169 HMPP_kinase 4-amino-5- 99.8 2.1E-19 4.5E-24 140.0 15.3 151 73-228 68-230 (242)
56 PRK12412 pyridoxal kinase; Rev 99.8 2E-19 4.4E-24 141.8 15.2 151 73-228 72-235 (268)
57 TIGR00097 HMP-P_kinase phospho 99.8 2.8E-19 6E-24 140.1 15.8 150 73-228 67-229 (254)
58 PRK06427 bifunctional hydroxy- 99.8 6.3E-19 1.4E-23 139.1 15.3 150 73-228 73-237 (266)
59 KOG2947 Carbohydrate kinase [C 99.8 5.5E-18 1.2E-22 125.7 16.4 201 5-227 66-283 (308)
60 PRK12616 pyridoxal kinase; Rev 99.8 2.4E-18 5.1E-23 135.8 14.6 151 73-228 74-238 (270)
61 PRK08573 phosphomethylpyrimidi 99.8 2.9E-18 6.3E-23 144.1 14.4 139 89-228 82-233 (448)
62 PTZ00344 pyridoxal kinase; Pro 99.7 8.9E-16 1.9E-20 122.8 15.6 150 73-227 77-246 (296)
63 PLN02898 HMP-P kinase/thiamin- 99.7 9.3E-16 2E-20 131.0 15.2 149 73-227 78-241 (502)
64 PTZ00347 phosphomethylpyrimidi 99.7 5.6E-16 1.2E-20 132.4 13.7 137 90-228 311-467 (504)
65 PF08543 Phos_pyr_kin: Phospho 99.7 2.9E-15 6.4E-20 116.6 13.3 151 73-228 60-223 (246)
66 COG0351 ThiD Hydroxymethylpyri 99.6 1.1E-14 2.4E-19 111.5 14.7 150 73-227 72-233 (263)
67 PRK14713 multifunctional hydro 99.6 3.9E-15 8.4E-20 127.8 13.2 150 73-228 98-261 (530)
68 PLN02978 pyridoxal kinase 99.6 1.9E-14 4E-19 115.6 16.3 151 74-228 87-256 (308)
69 PRK09517 multifunctional thiam 99.6 1.5E-14 3.2E-19 128.6 13.7 148 73-227 310-472 (755)
70 cd01170 THZ_kinase 4-methyl-5- 99.6 4.5E-14 9.7E-19 109.5 14.2 153 68-227 44-210 (242)
71 cd01171 YXKO-related B.subtili 99.6 7.2E-14 1.6E-18 109.6 12.4 146 70-227 74-223 (254)
72 COG2240 PdxK Pyridoxal/pyridox 99.5 8.7E-13 1.9E-17 101.7 14.1 155 69-227 69-238 (281)
73 TIGR00196 yjeF_cterm yjeF C-te 99.4 2.4E-12 5.3E-17 101.8 11.8 200 4-227 32-235 (272)
74 PTZ00493 phosphomethylpyrimidi 99.4 1.2E-11 2.7E-16 98.6 14.2 152 74-227 74-273 (321)
75 PRK09355 hydroxyethylthiazole 99.4 2.6E-11 5.5E-16 95.3 14.0 152 69-227 50-214 (263)
76 TIGR00694 thiM hydroxyethylthi 99.3 3.7E-11 8E-16 93.7 13.1 161 59-227 36-209 (249)
77 KOG2599 Pyridoxal/pyridoxine/p 99.1 4.2E-09 9.2E-14 80.1 12.5 146 71-220 79-241 (308)
78 KOG2598 Phosphomethylpyrimidin 98.9 2.1E-08 4.4E-13 81.2 12.0 151 73-227 92-271 (523)
79 PF02110 HK: Hydroxyethylthiaz 98.6 4.1E-06 8.9E-11 64.5 15.5 151 69-226 45-208 (246)
80 KOG3009 Predicted carbohydrate 98.6 1.8E-07 4E-12 76.3 8.2 141 72-225 424-586 (614)
81 PRK10565 putative carbohydrate 98.3 3.8E-05 8.3E-10 66.0 14.0 140 71-227 318-463 (508)
82 COG2145 ThiM Hydroxyethylthiaz 98.2 0.00013 2.8E-09 56.0 14.0 155 59-221 42-209 (265)
83 PF01256 Carb_kinase: Carbohyd 98.0 0.00014 3E-09 56.5 11.0 141 69-227 63-210 (242)
84 KOG3974 Predicted sugar kinase 97.6 0.0024 5.2E-08 49.1 11.3 139 70-216 98-240 (306)
85 PRK03979 ADP-specific phosphof 97.4 0.006 1.3E-07 51.4 12.7 74 72-149 221-305 (463)
86 COG0063 Predicted sugar kinase 97.3 0.0074 1.6E-07 47.9 12.1 137 70-219 98-239 (284)
87 PF04587 ADP_PFK_GK: ADP-speci 97.3 0.019 4.2E-07 48.7 15.1 76 71-150 207-292 (444)
88 TIGR02045 P_fruct_ADP ADP-spec 97.1 0.022 4.8E-07 47.9 13.6 76 70-149 206-291 (446)
89 PRK14039 ADP-dependent glucoki 97.0 0.042 9.1E-07 46.3 14.0 76 72-151 209-295 (453)
90 PRK14038 ADP-dependent glucoki 96.4 0.11 2.4E-06 43.9 12.4 77 69-150 220-300 (453)
91 PRK10076 pyruvate formate lyas 93.6 1.2 2.6E-05 34.0 9.7 73 90-170 53-130 (213)
92 cd01938 ADPGK_ADPPFK ADP-depen 89.4 3.2 6.9E-05 35.4 8.7 73 73-149 205-285 (445)
93 COG1180 PflA Pyruvate-formate 85.0 17 0.00037 28.7 11.6 87 73-169 83-174 (260)
94 COG0269 SgbH 3-hexulose-6-phos 81.2 22 0.00048 27.1 9.3 95 71-177 78-173 (217)
95 PF01118 Semialdhyde_dh: Semia 78.4 11 0.00023 25.7 6.1 95 3-116 5-101 (121)
96 TIGR00334 5S_RNA_mat_M5 ribonu 78.1 25 0.00054 25.9 8.4 83 73-165 22-107 (174)
97 PHA00438 hypothetical protein 76.9 2.3 5E-05 26.3 2.0 17 201-217 46-62 (81)
98 PF13986 DUF4224: Domain of un 74.7 4.8 0.0001 22.5 2.8 33 139-173 2-34 (47)
99 PF00289 CPSase_L_chain: Carba 73.5 3 6.5E-05 28.2 2.1 93 3-106 8-101 (110)
100 PF10911 DUF2717: Protein of u 72.7 3.3 7.2E-05 25.6 2.0 18 200-217 45-62 (77)
101 PRK15452 putative protease; Pr 72.6 54 0.0012 28.2 9.8 104 70-174 20-141 (443)
102 COG0826 Collagenase and relate 68.8 66 0.0014 26.7 10.4 102 72-174 25-144 (347)
103 PRK06901 aspartate-semialdehyd 68.4 65 0.0014 26.4 12.4 84 5-113 11-96 (322)
104 KOG4184 Predicted sugar kinase 66.8 12 0.00027 30.7 4.5 74 73-150 238-317 (478)
105 PRK10017 colanic acid biosynth 64.8 75 0.0016 27.2 9.2 75 69-146 113-188 (426)
106 PRK15447 putative protease; Pr 62.7 81 0.0018 25.5 10.4 99 72-174 27-138 (301)
107 PF04230 PS_pyruv_trans: Polys 58.5 63 0.0014 24.7 7.4 131 3-144 2-137 (286)
108 TIGR02494 PFLE_PFLC glycyl-rad 57.8 96 0.0021 24.8 9.8 75 90-172 140-219 (295)
109 COG1099 Predicted metal-depend 56.2 93 0.002 24.1 9.5 102 69-175 90-210 (254)
110 PF10087 DUF2325: Uncharacteri 55.5 28 0.00061 22.6 4.2 41 68-112 43-83 (97)
111 PF00919 UPF0004: Uncharacteri 54.7 59 0.0013 21.4 6.3 62 71-140 34-98 (98)
112 cd07266 HPCD_N_class_II N-term 53.9 47 0.001 22.0 5.3 47 6-52 71-117 (121)
113 PF02700 PurS: Phosphoribosylf 53.8 13 0.00028 23.5 2.2 32 5-41 14-45 (80)
114 PF07283 TrbH: Conjugal transf 53.1 45 0.00098 23.0 4.9 23 4-26 33-55 (121)
115 cd07265 2_3_CTD_N N-terminal d 53.1 42 0.00091 22.3 4.9 44 9-52 75-118 (122)
116 PF04016 DUF364: Domain of unk 52.9 30 0.00065 24.7 4.2 42 67-112 56-97 (147)
117 COG4809 Archaeal ADP-dependent 52.8 1.4E+02 0.0031 25.2 12.1 78 69-150 221-308 (466)
118 TIGR01745 asd_gamma aspartate- 48.9 1.6E+02 0.0035 24.7 12.0 90 5-116 9-101 (366)
119 PF13460 NAD_binding_10: NADH( 48.6 63 0.0014 23.3 5.6 90 5-111 7-96 (183)
120 cd05014 SIS_Kpsf KpsF-like pro 47.5 68 0.0015 21.7 5.3 36 157-192 64-99 (128)
121 PF03841 SelA: L-seryl-tRNA se 45.3 19 0.00041 29.9 2.4 66 77-144 143-213 (367)
122 PRK11145 pflA pyruvate formate 44.5 1.5E+02 0.0032 22.9 9.3 74 91-170 86-164 (246)
123 COG1922 WecG Teichoic acid bio 44.4 1.1E+02 0.0025 24.1 6.4 99 68-177 59-171 (253)
124 PF02571 CbiJ: Precorrin-6x re 44.4 34 0.00074 26.8 3.7 81 95-180 57-142 (249)
125 PRK12399 tagatose 1,6-diphosph 43.5 1.8E+02 0.004 23.8 8.9 88 90-177 141-250 (324)
126 cd08343 ED_TypeI_classII_C C-t 43.3 89 0.0019 21.1 5.4 43 10-52 74-116 (131)
127 TIGR02826 RNR_activ_nrdG3 anae 42.9 1.2E+02 0.0026 21.6 6.4 48 88-144 72-119 (147)
128 PRK10386 curli assembly protei 42.8 95 0.0021 21.7 5.2 50 1-52 38-87 (130)
129 COG2403 Predicted GTPase [Gene 42.7 82 0.0018 26.5 5.6 34 197-230 130-164 (449)
130 PRK13397 3-deoxy-7-phosphohept 42.7 1.7E+02 0.0036 23.1 7.6 78 89-177 64-160 (250)
131 PRK05783 hypothetical protein; 42.0 59 0.0013 20.8 3.8 31 5-40 16-46 (84)
132 PRK06423 phosphoribosylformylg 42.0 35 0.00075 21.0 2.8 30 5-40 14-44 (73)
133 cd07261 Glo_EDI_BRP_like_11 Th 41.8 65 0.0014 21.0 4.4 41 8-50 72-112 (114)
134 PRK05974 phosphoribosylformylg 41.7 34 0.00074 21.5 2.8 30 5-40 14-44 (80)
135 TIGR03128 RuMP_HxlA 3-hexulose 40.7 95 0.0021 23.2 5.6 58 72-142 75-134 (206)
136 PF14502 HTH_41: Helix-turn-he 40.0 71 0.0015 18.0 3.7 41 140-181 7-47 (48)
137 PRK13883 conjugal transfer pro 39.6 92 0.002 22.4 4.9 20 5-24 62-81 (151)
138 smart00642 Aamy Alpha-amylase 39.6 45 0.00097 24.3 3.5 24 91-114 70-93 (166)
139 cd08345 Fosfomycin_RP Fosfomyc 39.4 93 0.002 20.1 4.9 43 8-51 67-109 (113)
140 COG1828 PurS Phosphoribosylfor 39.4 34 0.00073 21.8 2.4 30 5-40 15-45 (83)
141 PTZ00445 p36-lilke protein; Pr 38.5 1.5E+02 0.0033 22.8 6.1 24 89-112 27-51 (219)
142 cd03061 GST_N_CLIC GST_N famil 37.9 24 0.00051 22.9 1.6 29 3-31 19-47 (91)
143 cd09013 BphC-JF8_N_like N-term 37.9 1E+02 0.0023 20.3 5.0 44 7-52 74-117 (121)
144 TIGR00302 phosphoribosylformyl 37.7 43 0.00093 21.0 2.7 30 5-40 14-44 (80)
145 cd07242 Glo_EDI_BRP_like_6 Thi 37.3 1E+02 0.0022 20.5 4.9 45 8-52 81-127 (128)
146 TIGR03278 methan_mark_10 putat 37.2 2.6E+02 0.0057 23.8 10.9 85 74-165 74-165 (404)
147 cd07241 Glo_EDI_BRP_like_3 Thi 36.9 1.1E+02 0.0023 20.1 4.9 42 7-49 82-123 (125)
148 COG1646 Predicted phosphate-bi 36.9 1.2E+02 0.0027 23.5 5.5 40 72-114 40-80 (240)
149 PF02603 Hpr_kinase_N: HPr Ser 36.8 28 0.0006 24.1 1.9 43 136-178 50-92 (127)
150 TIGR01459 HAD-SF-IIA-hyp4 HAD- 36.7 57 0.0012 25.2 3.9 16 161-176 58-77 (242)
151 TIGR01125 MiaB-like tRNA modif 36.3 1.4E+02 0.003 25.5 6.4 62 72-141 35-96 (430)
152 PF00325 Crp: Bacterial regula 36.3 54 0.0012 16.7 2.4 30 138-167 1-30 (32)
153 PF11167 DUF2953: Protein of u 35.9 28 0.0006 19.8 1.5 18 201-218 2-19 (53)
154 PF11469 Ribonucleas_3_2: Ribo 35.4 25 0.00055 23.3 1.4 28 199-226 53-81 (120)
155 PF00392 GntR: Bacterial regul 34.3 93 0.002 18.2 3.8 31 138-168 23-53 (64)
156 PRK06598 aspartate-semialdehyd 34.0 2.9E+02 0.0062 23.3 11.8 90 5-115 10-101 (369)
157 COG0136 Asd Aspartate-semialde 34.0 2.7E+02 0.0059 23.0 12.3 90 5-114 10-99 (334)
158 COG1871 CheD Chemotaxis protei 33.5 98 0.0021 22.5 4.2 45 2-49 110-154 (164)
159 PRK04169 geranylgeranylglycery 33.1 1.3E+02 0.0028 23.4 5.2 41 71-114 30-70 (232)
160 TIGR01768 GGGP-family geranylg 32.3 1.4E+02 0.003 23.1 5.2 40 72-114 26-65 (223)
161 COG1654 BirA Biotin operon rep 32.2 99 0.0021 19.5 3.7 56 125-182 5-60 (79)
162 PF00128 Alpha-amylase: Alpha 32.1 66 0.0014 25.4 3.7 24 90-113 51-74 (316)
163 cd04726 KGPDC_HPS 3-Keto-L-gul 32.0 2.1E+02 0.0046 21.1 7.1 56 72-141 76-133 (202)
164 cd08364 FosX FosX, a fosfomyci 31.8 1.1E+02 0.0025 20.7 4.4 44 8-52 78-121 (131)
165 PF09904 HTH_43: Winged helix- 31.8 53 0.0011 21.3 2.4 39 141-179 23-61 (90)
166 PF02515 CoA_transf_3: CoA-tra 31.6 1.1E+02 0.0023 22.8 4.5 47 121-175 7-55 (191)
167 cd04880 ACT_AAAH-PDT-like ACT 31.4 1.1E+02 0.0023 18.5 3.8 22 10-31 14-35 (75)
168 cd08344 MhqB_like_N N-terminal 31.2 1.5E+02 0.0033 19.2 4.9 40 9-51 68-107 (112)
169 COG0373 HemA Glutamyl-tRNA red 31.2 97 0.0021 26.4 4.5 120 3-151 184-303 (414)
170 COG0149 TpiA Triosephosphate i 31.0 63 0.0014 25.4 3.2 41 134-174 88-128 (251)
171 cd04904 ACT_AAAH ACT domain of 30.1 93 0.002 19.0 3.3 21 11-31 16-36 (74)
172 PRK11478 putative lyase; Provi 29.6 1.5E+02 0.0033 19.6 4.8 40 10-50 87-126 (129)
173 PF14871 GHL6: Hypothetical gl 29.5 98 0.0021 21.6 3.7 55 157-219 3-57 (132)
174 PF02659 DUF204: Domain of unk 29.4 47 0.001 19.8 1.9 14 205-218 3-16 (67)
175 PRK12595 bifunctional 3-deoxy- 29.2 3.3E+02 0.0071 22.8 7.3 78 87-175 165-260 (360)
176 COG0595 mRNA degradation ribon 29.0 4.3E+02 0.0092 23.7 9.0 129 71-212 324-458 (555)
177 PRK13982 bifunctional SbtC-lik 28.9 3E+02 0.0065 24.1 7.1 75 102-177 178-265 (475)
178 TIGR02493 PFLA pyruvate format 28.9 2.6E+02 0.0057 21.2 10.0 74 91-170 81-159 (235)
179 cd00311 TIM Triosephosphate is 28.9 74 0.0016 24.9 3.3 43 134-177 84-126 (242)
180 cd01012 YcaC_related YcaC rela 28.5 2.2E+02 0.0047 20.2 5.9 21 90-110 22-42 (157)
181 COG1618 Predicted nucleotide k 28.4 2.5E+02 0.0053 20.8 8.7 48 4-52 17-68 (179)
182 cd07255 Glo_EDI_BRP_like_12 Th 28.3 1.8E+02 0.0038 19.1 6.0 43 7-52 76-118 (125)
183 cd04911 ACT_AKiii-YclM-BS_1 AC 28.2 1.5E+02 0.0034 18.5 4.0 31 8-41 17-47 (76)
184 COG3033 TnaA Tryptophanase [Am 28.1 2.5E+02 0.0055 23.7 6.2 54 85-142 200-266 (471)
185 PRK09206 pyruvate kinase; Prov 28.0 2.9E+02 0.0062 24.2 6.9 92 73-174 185-278 (470)
186 COG2873 MET17 O-acetylhomoseri 27.9 1E+02 0.0022 26.0 4.0 43 92-143 165-207 (426)
187 PF01212 Beta_elim_lyase: Beta 27.8 60 0.0013 26.1 2.7 67 74-143 125-194 (290)
188 PF01884 PcrB: PcrB family; I 27.7 1.7E+02 0.0037 22.7 5.0 39 72-114 31-69 (230)
189 COG1921 SelA Selenocysteine sy 27.5 1.1E+02 0.0023 25.9 4.1 46 94-144 177-223 (395)
190 TIGR01769 GGGP geranylgeranylg 27.3 2.1E+02 0.0045 21.8 5.3 39 73-114 24-63 (205)
191 KOG2855 Ribokinase [Carbohydra 27.3 23 0.0005 29.0 0.3 56 86-153 147-202 (330)
192 PRK09722 allulose-6-phosphate 27.2 2.5E+02 0.0055 21.8 5.9 53 73-140 82-136 (229)
193 PF02082 Rrf2: Transcriptional 27.2 1.6E+02 0.0035 18.3 4.9 45 140-186 26-70 (83)
194 cd07251 Glo_EDI_BRP_like_10 Th 27.1 1.7E+02 0.0036 19.0 4.6 43 8-52 77-120 (121)
195 cd02752 MopB_Formate-Dh-Na-lik 27.0 3E+02 0.0065 25.1 7.2 94 69-166 165-267 (649)
196 COG2099 CobK Precorrin-6x redu 26.9 1.1E+02 0.0025 24.0 3.9 84 94-184 56-144 (257)
197 PLN02645 phosphoglycolate phos 26.7 1.3E+02 0.0027 24.4 4.5 11 157-167 75-85 (311)
198 KOG0369 Pyruvate carboxylase [ 26.7 33 0.00072 31.0 1.1 65 159-227 723-795 (1176)
199 cd02766 MopB_3 The MopB_3 CD i 26.6 3.6E+02 0.0078 23.6 7.5 43 69-113 153-196 (501)
200 cd09012 Glo_EDI_BRP_like_24 Th 26.5 2E+02 0.0043 19.0 5.0 42 9-52 82-123 (124)
201 cd07252 BphC1-RGP6_N_like N-te 26.4 1E+02 0.0022 20.4 3.4 44 9-52 71-116 (120)
202 cd08346 PcpA_N_like N-terminal 26.2 1.9E+02 0.0041 18.8 5.1 39 8-49 86-124 (126)
203 TIGR01610 phage_O_Nterm phage 26.1 1.6E+02 0.0035 19.0 4.1 46 136-184 44-89 (95)
204 cd07240 ED_TypeI_classII_N N-t 25.9 1.9E+02 0.0041 18.6 5.3 44 8-52 70-113 (117)
205 PRK14566 triosephosphate isome 25.9 78 0.0017 25.1 3.0 41 134-174 95-135 (260)
206 TIGR02325 C_P_lyase_phnF phosp 25.6 1.2E+02 0.0027 23.1 4.1 43 138-183 31-73 (238)
207 TIGR00696 wecB_tagA_cpsF bacte 25.6 2.8E+02 0.006 20.5 8.0 19 91-109 35-53 (177)
208 PF00121 TIM: Triosephosphate 25.5 86 0.0019 24.5 3.1 43 134-177 84-126 (244)
209 TIGR00089 RNA modification enz 25.5 2.3E+02 0.0049 24.2 5.9 64 72-143 35-101 (429)
210 PRK06739 pyruvate kinase; Vali 25.3 2.5E+02 0.0055 23.4 5.9 93 73-175 178-272 (352)
211 PRK06354 pyruvate kinase; Prov 25.1 4E+02 0.0086 24.1 7.4 93 72-174 190-284 (590)
212 cd07237 BphC1-RGP6_C_like C-te 25.1 1.7E+02 0.0037 20.6 4.5 43 10-52 88-130 (154)
213 PRK14339 (dimethylallyl)adenos 25.1 3.3E+02 0.0072 23.2 6.8 65 72-143 26-92 (420)
214 PRK13307 bifunctional formalde 25.0 2E+02 0.0042 24.4 5.3 57 73-141 250-306 (391)
215 cd04929 ACT_TPH ACT domain of 25.0 1.4E+02 0.0031 18.3 3.5 21 11-31 16-36 (74)
216 PF03808 Glyco_tran_WecB: Glyc 25.0 2.8E+02 0.006 20.2 7.2 19 159-177 93-111 (172)
217 PTZ00333 triosephosphate isome 25.0 1E+02 0.0022 24.3 3.5 43 134-177 89-131 (255)
218 PRK11402 DNA-binding transcrip 24.9 1.3E+02 0.0027 23.2 4.0 43 138-183 32-74 (241)
219 cd07245 Glo_EDI_BRP_like_9 Thi 24.9 1.4E+02 0.0031 18.8 3.8 37 10-48 76-112 (114)
220 COG1255 Uncharacterized protei 24.9 2.4E+02 0.0052 19.4 5.2 77 10-111 26-102 (129)
221 PF10627 CsgE: Curli assembly 24.9 65 0.0014 21.6 2.0 50 1-52 12-64 (107)
222 PLN02271 serine hydroxymethylt 24.8 1.1E+02 0.0024 27.4 3.9 43 72-117 297-339 (586)
223 cd08352 Glo_EDI_BRP_like_1 Thi 24.8 2E+02 0.0044 18.6 4.7 39 10-49 84-122 (125)
224 PF00903 Glyoxalase: Glyoxalas 24.6 2E+02 0.0043 18.7 4.6 40 9-48 87-126 (128)
225 COG0111 SerA Phosphoglycerate 24.4 1.9E+02 0.0041 23.8 5.0 49 92-140 153-203 (324)
226 PF09587 PGA_cap: Bacterial ca 24.4 1.5E+02 0.0032 23.1 4.3 51 123-173 172-222 (250)
227 COG1889 NOP1 Fibrillarin-like 24.4 90 0.002 23.9 2.9 45 87-142 107-153 (231)
228 cd03027 GRX_DEP Glutaredoxin ( 24.2 93 0.002 18.6 2.6 23 7-29 12-34 (73)
229 PLN02743 nicotinamidase 24.2 3.1E+02 0.0066 21.4 6.0 19 91-109 61-79 (239)
230 cd02977 ArsC_family Arsenate R 24.2 1.1E+02 0.0024 20.0 3.1 25 7-31 10-34 (105)
231 PF05368 NmrA: NmrA-like famil 24.0 68 0.0015 24.4 2.4 93 5-109 7-99 (233)
232 cd07235 MRD Mitomycin C resist 23.9 2.2E+02 0.0047 18.6 4.8 42 8-51 79-121 (122)
233 COG1794 RacX Aspartate racemas 23.9 3.5E+02 0.0076 21.0 6.5 54 133-186 141-207 (230)
234 PRK10079 phosphonate metabolis 23.8 1.5E+02 0.0033 22.8 4.3 43 138-183 34-76 (241)
235 TIGR03537 DapC succinyldiamino 23.8 1.9E+02 0.0042 23.6 5.1 25 89-113 154-178 (350)
236 COG1060 ThiH Thiamine biosynth 23.7 4.4E+02 0.0096 22.1 7.3 85 90-174 92-178 (370)
237 PRK14999 histidine utilization 23.5 1.4E+02 0.0031 23.0 4.1 43 138-183 35-77 (241)
238 COG1306 Uncharacterized conser 23.4 1.6E+02 0.0036 23.9 4.2 52 90-141 242-294 (400)
239 PLN02232 ubiquinone biosynthes 23.4 2.6E+02 0.0056 19.9 5.2 41 73-113 44-84 (160)
240 TIGR02404 trehalos_R_Bsub treh 23.3 1.5E+02 0.0032 22.7 4.1 44 137-183 22-65 (233)
241 PF05906 DUF865: Herpesvirus-7 23.2 8.8 0.00019 18.9 -1.7 16 197-212 20-35 (35)
242 cd07233 Glyoxalase_I Glyoxalas 23.2 1.4E+02 0.0031 19.4 3.6 38 10-49 82-119 (121)
243 TIGR01361 DAHP_synth_Bsub phos 23.1 3.8E+02 0.0083 21.2 7.4 76 89-175 74-167 (260)
244 COG0633 Fdx Ferredoxin [Energy 23.1 92 0.002 20.5 2.5 32 8-41 21-52 (102)
245 cd07243 2_3_CTD_C C-terminal d 23.0 2.1E+02 0.0045 19.9 4.5 41 12-52 84-124 (143)
246 cd04931 ACT_PAH ACT domain of 23.0 1.5E+02 0.0033 19.1 3.5 21 11-31 30-50 (90)
247 cd08362 BphC5-RrK37_N_like N-t 23.0 2.2E+02 0.0048 18.4 5.4 44 9-52 72-116 (120)
248 cd04910 ACT_AK-Ectoine_1 ACT d 22.9 1.9E+02 0.0042 17.7 4.4 36 3-40 12-47 (71)
249 PRK09764 DNA-binding transcrip 22.5 1.6E+02 0.0034 22.7 4.1 43 138-183 28-70 (240)
250 cd08363 FosB FosB, a fosfomyci 22.4 2.5E+02 0.0055 19.0 4.8 44 8-52 71-114 (131)
251 TIGR02018 his_ut_repres histid 22.3 1.6E+02 0.0035 22.4 4.2 43 138-183 24-66 (230)
252 PF13200 DUF4015: Putative gly 22.3 1.2E+02 0.0026 24.8 3.5 51 91-141 170-224 (316)
253 PF04413 Glycos_transf_N: 3-De 22.3 3.3E+02 0.0072 20.2 6.2 53 91-143 105-158 (186)
254 PRK06444 prephenate dehydrogen 22.2 3.5E+02 0.0075 20.4 5.8 21 3-23 6-27 (197)
255 COG1393 ArsC Arsenate reductas 22.2 1.2E+02 0.0027 20.6 3.0 24 8-31 13-36 (117)
256 PRK13288 pyrophosphatase PpaX; 22.1 3.4E+02 0.0073 20.2 6.8 23 156-178 87-109 (214)
257 cd08360 MhqB_like_C C-terminal 22.1 2.6E+02 0.0057 18.9 5.8 42 11-52 78-119 (134)
258 cd00288 Pyruvate_Kinase Pyruva 22.1 4.9E+02 0.011 22.8 7.3 92 73-175 187-280 (480)
259 cd07244 FosA FosA, a Fosfomyci 22.0 2.4E+02 0.0053 18.5 4.9 41 8-52 69-109 (121)
260 PLN02561 triosephosphate isome 21.9 1.2E+02 0.0026 23.9 3.3 43 134-177 88-130 (253)
261 KOG1257 NADP+-dependent malic 21.9 3.7E+02 0.008 23.9 6.3 49 122-178 123-171 (582)
262 COG4607 CeuA ABC-type enteroch 21.8 3.9E+02 0.0085 21.8 6.0 15 12-26 68-82 (320)
263 cd00368 Molybdopterin-Binding 21.6 1.3E+02 0.0027 24.8 3.7 43 69-113 152-195 (374)
264 PRK15492 triosephosphate isome 21.6 1.1E+02 0.0024 24.2 3.1 43 134-177 94-136 (260)
265 cd02762 MopB_1 The MopB_1 CD i 21.6 4E+02 0.0087 23.5 6.9 32 141-172 259-290 (539)
266 TIGR03569 NeuB_NnaB N-acetylne 21.6 4.7E+02 0.01 21.6 7.3 48 88-146 73-121 (329)
267 PRK14335 (dimethylallyl)adenos 21.6 3.7E+02 0.0079 23.2 6.5 66 72-144 36-104 (455)
268 PRK05428 HPr kinase/phosphoryl 21.6 1.6E+02 0.0034 24.1 3.9 43 136-178 51-93 (308)
269 COG0520 csdA Selenocysteine ly 21.4 2.1E+02 0.0047 24.3 5.0 40 73-113 162-201 (405)
270 KOG3361 Iron binding protein i 21.1 75 0.0016 22.2 1.8 28 200-227 85-113 (157)
271 PF05014 Nuc_deoxyrib_tr: Nucl 21.0 2.6E+02 0.0056 18.5 6.7 94 77-179 1-101 (113)
272 PF03597 CcoS: Cytochrome oxid 20.9 89 0.0019 17.3 1.7 25 205-229 14-40 (45)
273 TIGR02194 GlrX_NrdH Glutaredox 20.8 1.2E+02 0.0027 18.0 2.7 24 7-30 10-33 (72)
274 smart00460 TGc Transglutaminas 20.8 1.1E+02 0.0023 17.8 2.4 22 6-27 10-31 (68)
275 TIGR01579 MiaB-like-C MiaB-lik 20.7 2.9E+02 0.0063 23.4 5.7 65 72-145 32-98 (414)
276 PF02037 SAP: SAP domain; Int 20.7 1.2E+02 0.0026 15.4 2.2 16 10-25 7-22 (35)
277 cd07238 Glo_EDI_BRP_like_5 Thi 20.7 2.5E+02 0.0053 18.0 5.0 41 9-51 68-109 (112)
278 PF12681 Glyoxalase_2: Glyoxal 20.6 2.4E+02 0.0051 17.8 4.9 39 9-49 67-106 (108)
279 PF02593 dTMP_synthase: Thymid 20.6 4E+02 0.0087 20.5 13.0 89 71-175 49-139 (217)
280 TIGR03540 DapC_direct LL-diami 20.5 2.9E+02 0.0063 22.8 5.6 41 73-113 164-206 (383)
281 cd03036 ArsC_like Arsenate Red 20.5 1.2E+02 0.0025 20.3 2.7 25 7-31 10-34 (111)
282 PF09383 NIL: NIL domain; Int 20.4 64 0.0014 19.7 1.3 21 4-24 54-74 (76)
283 PF07894 DUF1669: Protein of u 20.3 1.4E+02 0.0031 24.0 3.4 22 89-111 135-156 (284)
284 cd04868 ACT_AK-like ACT domain 20.2 1.5E+02 0.0034 16.0 2.9 22 8-29 16-37 (60)
285 PRK13237 tyrosine phenol-lyase 20.2 2.3E+02 0.0051 24.6 4.9 53 88-142 195-258 (460)
286 smart00513 SAP Putative DNA-bi 20.1 1.3E+02 0.0027 15.3 2.2 17 10-26 7-23 (35)
287 TIGR00789 flhB_rel flhB C-term 20.1 1.1E+02 0.0025 19.3 2.4 22 2-23 22-43 (82)
288 KOG1643 Triosephosphate isomer 20.1 2.2E+02 0.0049 21.7 4.2 40 134-173 86-125 (247)
289 PRK14337 (dimethylallyl)adenos 20.0 4.9E+02 0.011 22.4 6.9 68 72-146 38-109 (446)
No 1
>PLN02323 probable fructokinase
Probab=100.00 E-value=4.3e-38 Score=255.58 Aligned_cols=226 Identities=69% Similarity=1.144 Sum_probs=192.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++.||+++++.+..+.+|+.+++.++++|++++..++..+++..++.++++...+++++++|++
T Consensus 64 ~~vG~D~~g~~i~~~L~~~GI~~~~v~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (330)
T PLN02323 64 GKVGDDEFGHMLADILKKNGVNNEGVRFDPGARTALAFVTLRSDGEREFMFYRNPSADMLLRESELDLDLIRKAKIFHYG 143 (330)
T ss_pred EEecCChhHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCceeEEeecCCchhccCChHHCChHHHccCCEEEEe
Confidence 47999999999999999999999999888888999999998888999888775456666677777776678899999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++.+..+........+++.+++.|.++++||+++...|.+.....+.+.++++++|++++|+.|+..++|....+.++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~g~~~~~~~~~~ 223 (330)
T PLN02323 144 SISLITEPCRSAHLAAMKIAKEAGALLSYDPNLRLPLWPSAEAAREGIMSIWDEADIIKVSDEEVEFLTGGDDPDDDTVV 223 (330)
T ss_pred chhccCchHHHHHHHHHHHHHHcCCEEEEcCCCChhhccCHHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCccHHHHH
Confidence 87665555556778889999999999999999888888766667788889999999999999999999987654433344
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCC-------cccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDAN-------IFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~-------~~~a~~ 227 (230)
.+...|++.||||+|++|++++.++..+++++++++++||+||||+|+|||++++++|++ +++|.+
T Consensus 224 -~~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~Agfl~~l~~g~~~~~~~~~l~~al~ 296 (330)
T PLN02323 224 -KLWHPNLKLLLVTEGEEGCRYYTKDFKGRVEGFKVKAVDTTGAGDAFVGGLLSQLAKDLSLLEDEERLREALR 296 (330)
T ss_pred -HHHhcCCCEEEEecCCCceEEEeCCCceEeCCccCCCCCCCCcHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 444579999999999999999988877789988899999999999999999999999987 676654
No 2
>PLN02967 kinase
Probab=100.00 E-value=2.1e-37 Score=261.17 Aligned_cols=226 Identities=32% Similarity=0.561 Sum_probs=188.2
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|+++||+++++...++.+|+.+++.++++|++++.+ ..++++..+...++....+.+++++|++
T Consensus 264 g~VGdD~~G~~ll~~L~~~GVDts~v~~~~~~~Tgla~V~vd~~Gerr~~~-~~~gAd~~L~~~di~~~~l~~A~i~hfg 342 (581)
T PLN02967 264 GKLGDDDYGQAMLYYLNVNKVQTRSVCIDGKRATAVSTMKIAKRGRLKTTC-VKPCAEDSLSKSEINIDVLKEAKMFYFN 342 (581)
T ss_pred EEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCcEEEEEECCCCceEEEE-ecCChhhhCChhhcCHhHhcCCCEEEEe
Confidence 579999999999999999999999999888889999999999889877653 3467777788777777778999999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc-----
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE----- 155 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~----- 155 (230)
++.+..+.+.+.+..+++.+++.|++++||++.+..+|.......+.+.++++++||+++|++|+..|+|.....
T Consensus 343 g~~ll~e~~~~all~alk~Ak~~Gv~VsFDpNlR~~lw~~~e~~~e~i~elL~~aDILk~NeeEl~~LtG~~~~~e~~~~ 422 (581)
T PLN02967 343 THSLLDPTMRSTTLRAIKISKKLGGVIFYDLNLPLPLWSSSEETKSFIQEAWNLADIIEVTKQELEFLCGIEPTEEFDTK 422 (581)
T ss_pred CchhcccchHHHHHHHHHHHHHCCCEEEEECCCCcccccchHHHHHHHHHHHHhCCEEEECHHHHHHHhCCCcccccccc
Confidence 987666667788999999999999999999999999997666677788999999999999999999999854211
Q ss_pred ----------hHHHHHHHHhcCccEEEEEecCCceEEEecCc---eeeecCcccc--ccCCCCcchHHHHHHHHHHHcC-
Q 044512 156 ----------KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKF---KGRVPGFSVK--TIDTTGAGDAFVGSFLVSVAKD- 219 (230)
Q Consensus 156 ----------~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~---~~~~~~~~~~--~~dt~GaGDaf~ag~~~~l~~g- 219 (230)
....++.+...|++.||||+|++|++++.++. ...+++++++ ++|||||||+|+|||+++|++|
T Consensus 423 ~~~~~~~~~~~~e~a~~l~~~g~k~VVVTlG~~Ga~~~~~~~~~~v~~~~a~~V~V~vVDTTGAGDAF~AGfL~~Ll~g~ 502 (581)
T PLN02967 423 DNDKSKFVHYSPEVVAPLWHENLKVLFVTNGTSKIHYYTKEHNGAVHGMEDAPITPFTSDMSASGDGIVAGLMRMLTVQP 502 (581)
T ss_pred ccchhccccchHHHHHHHHhCCCCEEEEEECccceEEEECCCceeEeeccCCCCCCCCCCCCchhHHHHHHHHHHHHhcc
Confidence 11345566677999999999999999988754 3334445565 5999999999999999999984
Q ss_pred ------CCcccccc
Q 044512 220 ------ANIFNVKF 227 (230)
Q Consensus 220 ------~~~~~a~~ 227 (230)
.++++|.+
T Consensus 503 ~~~~g~~~LeeaLr 516 (581)
T PLN02967 503 HLITDKGYLEKTIK 516 (581)
T ss_pred CcccccccHHHHHH
Confidence 45666544
No 3
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=100.00 E-value=8e-37 Score=244.60 Aligned_cols=224 Identities=47% Similarity=0.764 Sum_probs=187.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|+++||+++++.+.++.+|+.+++.++++|++++.+++......... .++..+.+++++++|++
T Consensus 49 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~T~~~~~~~~~~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~ 127 (295)
T cd01167 49 GKVGDDEFGDFLLETLKEAGVDTRGIQFDPAAPTTLAFVTLDADGERSFEFYRGPAADLLLD-TELNPDLLSEADILHFG 127 (295)
T ss_pred EeecCcHHHHHHHHHHHHcCCCchheeecCCCCceEEEEEECCCCCEeEEeecCCcHhhhcC-ccCChhHhccCCEEEEe
Confidence 47999999999999999999999999877778999999999888999988764333221111 11345667899999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++.+..+...+.+.++++.+++.+.++++|++.+..+|.......+.+.++++++|++++|+.|+..+++.... .+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~g~~v~~d~~~~~~~~~~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~--~~~~ 205 (295)
T cd01167 128 SIALASEPSRSALLELLEAAKKAGVLISFDPNLRPPLWRDEEEARERIAELLELADIVKLSDEELELLFGEEDP--EEIA 205 (295)
T ss_pred chhhccchHHHHHHHHHHHHHHcCCEEEEcCCCChhhcCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCCH--HHHH
Confidence 86555555567788999999999999999999776667655555677889999999999999999999987643 3466
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCC-------Ccccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDA-------NIFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~-------~~~~a~~ 227 (230)
+.+.+.|++.+|||+|++|+++++++..+++++++++++||+||||+|+|||+++|++|+ ++++|.+
T Consensus 206 ~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~a~~~~vvDttGAGD~f~a~~~~~l~~g~~~~~~~~~~~~a~~ 279 (295)
T cd01167 206 ALLLLFGLKLVLVTRGADGALLYTKGGVGEVPGIPVEVVDTTGAGDAFVAGLLAQLLSRGLLALDEDELAEALR 279 (295)
T ss_pred HHHhhcCCCEEEEecCCcceEEEECCcceeeCCCCcceeeCCCccHHHHHHHHHHHHhCCcccccHHHHHHHHH
Confidence 778889999999999999999999888899999999999999999999999999999999 8988865
No 4
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=100.00 E-value=3.4e-36 Score=241.95 Aligned_cols=223 Identities=35% Similarity=0.567 Sum_probs=187.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|+++||+++++...++.+|+.+++.++++|++++.+...++++..+...+++ .+.+.+++|++
T Consensus 49 ~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~i~~~~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 126 (304)
T PRK09434 49 GRVGDDPFGRFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFLQPQDLP--PFRQGEWLHLC 126 (304)
T ss_pred EEecCchHHHHHHHHHHHcCCCCcceEEcCCCCceEEEEEECCCCCEeEEEecCCchhhhCCHHHhh--hhcCCCEEEEc
Confidence 4789999999999999999999999988888899999999988888887655444544444444443 35789999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++.+..+...+...++++.+++.+.++++|++.+...|.......+.+.++++++|++++|++|+..++|... .++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~e~~~l~g~~~--~~~~~ 204 (304)
T PRK09434 127 SIALSAEPSRSTTFEAMRRIKAAGGFVSFDPNLREDLWQDEAELRECLRQALALADVVKLSEEELCFLSGTSQ--LEDAI 204 (304)
T ss_pred cccccCchHHHHHHHHHHHHHHcCCEEEECCCCChhhccCHHHHHHHHHHHHHhcceeeCCHHHHHHHhCCCC--HHHHH
Confidence 9766655556777889999999999999999987777765666677788899999999999999999988653 35678
Q ss_pred HHHHh-cCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCC------Ccccccc
Q 044512 161 MSLWH-DNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDA------NIFNVKF 227 (230)
Q Consensus 161 ~~l~~-~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~------~~~~a~~ 227 (230)
+.+.+ .|++.||||+|++|++++++++.+++++++++++|||||||+|+|||++++++|+ ++++|.+
T Consensus 205 ~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~f~ag~~~~l~~g~~~~~~~~~~~a~~ 278 (304)
T PRK09434 205 YALADRYPIALLLVTLGAEGVLVHTRGQVQHFPAPSVDPVDTTGAGDAFVAGLLAGLSQAGLWTDEAELAEIIA 278 (304)
T ss_pred HHHHhhcCCcEEEEEecCCceEEEeCCceeEeCCCCCCCCcCCCchHHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 88876 6889999999999999999888889999899999999999999999999999997 6776754
No 5
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=100.00 E-value=6.7e-36 Score=239.15 Aligned_cols=225 Identities=32% Similarity=0.500 Sum_probs=184.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++.||+++++....+.+|+.+++.++++|++++..++...+...++.++++...+++++++|++
T Consensus 52 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 131 (294)
T cd01166 52 TAVGDDPFGRFILAELRREGVDTSHVRVDPGRPTGLYFLEIGAGGERRVLYYRAGSAASRLTPEDLDEAALAGADHLHLS 131 (294)
T ss_pred EecCCCHHHHHHHHHHHHcCCCCceEEEeCCCcceEEEEEecCCCCceEEEeCCCChhHhCChhhCCHHHHhCCCEEEEc
Confidence 47999999999999999999999999878888999999999887888888775545555566666655677899999999
Q ss_pred ccccc-CchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc-chHH
Q 044512 81 SISLI-SEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA-EKDD 158 (230)
Q Consensus 81 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~-~~~~ 158 (230)
++... .+.+.+.+.++++.+++.+.++++||+.+..+|. .....+.+.++++++|++++|+.|++.+++.... +..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-~~~~~~~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~~ 210 (294)
T cd01166 132 GITLALSESAREALLEALEAAKARGVTVSFDLNYRPKLWS-AEEAREALEELLPYVDIVLPSEEEAEALLGDEDPTDAAE 210 (294)
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCEEEECCCCcchhcC-hHHHHHHHHHHHHhCCEEEcCHHHHHHHhCCCCchhHHH
Confidence 86432 2222478888999999999999999987654443 3334566778999999999999999999987542 1122
Q ss_pred HHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 159 VVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 159 ~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.++.+ +.|++.|+||+|++|+++++++..+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 211 ~~~~l-~~g~~~viit~G~~G~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~ 278 (294)
T cd01166 211 RALAL-ALGVKAVVVKLGAEGALVYTGGGRVFVPAYPVEVVDTTGAGDAFAAGFLAGLLEGWDLEEALR 278 (294)
T ss_pred HHHhh-cCCccEEEEEEcCCceEEEECCceEEeCCCCcccccCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 33444 589999999999999999998888999999889999999999999999999999999999865
No 6
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=100.00 E-value=2e-36 Score=244.10 Aligned_cols=218 Identities=22% Similarity=0.307 Sum_probs=182.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|+++||+++++... +.+|+.++++++++|++++..+ .+++..++.+++....+++++++|++
T Consensus 76 ~~vG~D~~g~~i~~~l~~~GV~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~--~~~~~~~~~~~~~~~~l~~~~~v~~~ 152 (312)
T cd01168 76 GRVGDDKLGDFLLKDLRAAGVDTRYQVQP-DGPTGTCAVLVTPDAERTMCTY--LGAANELSPDDLDWSLLAKAKYLYLE 152 (312)
T ss_pred EEeccChhHHHHHHHHHHCCCccccccCC-CCCceEEEEEEcCCCceeeecc--cchhhcCChhHCCHHHHccCCEEEEE
Confidence 47999999999999999999999988754 5689999999988899988765 45556677777777778999999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++.+.. +.+.+..+++.+++.|.++++|++... ......+.+.++++++|++++|++|++.|++.+..+..+++
T Consensus 153 ~~~~~~--~~~~~~~~~~~a~~~g~~v~~d~~~~~----~~~~~~~~~~~~l~~~d~l~~n~~E~~~l~~~~~~~~~~~a 226 (312)
T cd01168 153 GYLLTV--PPEAILLAAEHAKENGVKIALNLSAPF----IVQRFKEALLELLPYVDILFGNEEEAEALAEAETTDDLEAA 226 (312)
T ss_pred EEecCC--CHHHHHHHHHHHHHcCCEEEEeCCcHH----HHHHHHHHHHHHHhhCCEEEeCHHHHHHHhCCCCCChHHHH
Confidence 864322 237888899999999999999997311 01234456788999999999999999999985333345678
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCcc-ccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFS-VKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~-~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.+.+.+++.||+|+|++|+++++++..+++++++ ++++||+||||+|+|||++++++|+++++|.+
T Consensus 227 ~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~ag~l~~l~~g~~~~~a~~ 294 (312)
T cd01168 227 LKLLALRCRIVVITQGAKGAVVVEGGEVYPVPAIPVEKIVDTNGAGDAFAGGFLYGLVQGEPLEECIR 294 (312)
T ss_pred HHHHhcCCCEEEEecCCCCeEEEECCEEEeCCCCCCCCcccCCchHHHHHHHHHHHHHcCCCHHHHHH
Confidence 88888999999999999999999988888999988 89999999999999999999999999999865
No 7
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.2e-36 Score=249.34 Aligned_cols=225 Identities=37% Similarity=0.570 Sum_probs=182.4
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEe--cCCeeeEEEecCCCccccccccccCccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLK--KNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 78 (230)
++||+|.+|+++++.|+++|||++++.+.++.+|+.+++.++ ++| +.+.++...+++..+..++++...+++++++|
T Consensus 193 G~VGdD~fG~~l~~~L~~~GVDts~v~~~~~~~Tgla~V~v~~~~~g-r~~~~~~~~gA~~~L~~~di~~~~l~~a~ilh 271 (496)
T PLN02543 193 GKVGDDDFGEELVLMMNKERVQTRAVKFDENAKTACSRMKIKFRDGG-KMVAETVKEAAEDSLLASELNLAVLKEARMFH 271 (496)
T ss_pred EEeCCCHHHHHHHHHHHHcCCcccceEecCCCCCceEEEEEEeCCCC-CEEEEecCCCHHHhCChhhcCHhHhCCCceEE
Confidence 479999999999999999999999999888889999999985 345 55543344566667777888777889999999
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc----
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA---- 154 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~---- 154 (230)
++++.+..+...+.+.++++.+++.|..++||++.+..+|.+.....+.+.++++++|++++|++|+..|+|....
T Consensus 272 ~~~~~l~~~~~~~a~~~al~~Ak~~G~~VsfDpN~R~~LW~~~~~~~~~i~~~l~~aDIl~~SeeEa~~Ltg~~~~~~~~ 351 (496)
T PLN02543 272 FNSEVLTSPSMQSTLFRAIELSKKFGGLIFFDLNLPLPLWRSRDETRELIKKAWNEADIIEVSRQELEFLLDEDYYERKR 351 (496)
T ss_pred ECChhhcCchHHHHHHHHHHHHHHCCCEEEEeCCCCccccCCHHHHHHHHHHHHHhCCEEEecHHHHHHHhCCCcccccc
Confidence 9998766666678889999999999999999999999999877777888999999999999999999999986410
Q ss_pred -----------------------chHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCc-----cccccCCCCcch
Q 044512 155 -----------------------EKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGF-----SVKTIDTTGAGD 206 (230)
Q Consensus 155 -----------------------~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~-----~~~~~dt~GaGD 206 (230)
+. ..++.+...|++.||||+|.+|++++.++....++.. +..++|||||||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g~~~VVVT~G~~Ga~~~t~~~~g~v~~~~~~~v~~~~VDTTGAGD 430 (496)
T PLN02543 352 NYPPQYYAESFEQTKNWRDYYHYTP-EEIAPLWHDGLKLLLVTDGTLRIHYYTPKFDGVVVGTEDVLITPFTCDRTGSGD 430 (496)
T ss_pred cccchhhhhhhhhhhcccccccCCH-HHHHHHHHCCCCEEEEEcCCCcEEEEECCCcccccccccccCCCCCcCCCchHH
Confidence 11 2345666789999999999999999886422222111 112489999999
Q ss_pred HHHHHHHHHHHc-------CCCcccccc
Q 044512 207 AFVGSFLVSVAK-------DANIFNVKF 227 (230)
Q Consensus 207 af~ag~~~~l~~-------g~~~~~a~~ 227 (230)
+|+|||+++|++ |.++++|.+
T Consensus 431 AF~AGfL~~Ll~~~~~~~~g~~l~ealr 458 (496)
T PLN02543 431 AVVAAIMRKLTTCPEMFEDQDVLERQLR 458 (496)
T ss_pred HHHHHHHHHHHhccccccccccHHHHHH
Confidence 999999999985 567777754
No 8
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=8.2e-36 Score=238.11 Aligned_cols=219 Identities=17% Similarity=0.286 Sum_probs=176.8
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
|+||+|.+|+.+++.|++.||+++++... +..|+.++++++++|+|++..++ +++..++++.++...+.+++++|++
T Consensus 56 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (289)
T cd01944 56 GPLGNGNWADQIRQAMRDEGIEILLPPRG-GDDGGCLVALVEPDGERSFISIS--GAEQDWSTEWFATLTVAPYDYVYLS 132 (289)
T ss_pred EEecCChHHHHHHHHHHHcCCcccccccc-CCCCeEEEEEEcCCCceEEEEeC--CccCCCCHHHhccccCCCCCEEEEe
Confidence 57999999999999999999999988764 55888888888888999987764 3444455455544346789999999
Q ss_pred cccccC-chHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHH
Q 044512 81 SISLIS-EPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDV 159 (230)
Q Consensus 81 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~ 159 (230)
++.+.. +...+.+.++++..+ .+.++++|++++...|. .+.+.++++++|++++|++|+..|+|....+...+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~D~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~~~~~~~~~ 206 (289)
T cd01944 133 GYTLASENASKVILLEWLEALP-AGTTLVFDPGPRISDIP-----DTILQALMAKRPIWSCNREEAAIFAERGDPAAEAS 206 (289)
T ss_pred CccccCcchhHHHHHHHHHhcc-CCCEEEEcCcccccccC-----HHHHHHHHhcCCEEccCHHHHHHHhCCCCcchHHH
Confidence 976533 224566677776643 57899999997765554 45678899999999999999999999765544445
Q ss_pred HHHHHhcCccEEEEEecCCceEEEe-cCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 160 VMSLWHDNLKLLLVTYGAKGCGYFT-KKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 160 ~~~l~~~g~~~vvvt~g~~g~~~~~-~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
++.+...+++.||+|+|++|++++. ++..+++++++++++||+||||+|+|||++++.+|+++++|.++
T Consensus 207 ~~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~~~~g~~~~~a~~~ 276 (289)
T cd01944 207 ALRIYAKTAAPVVVRLGSNGAWIRLPDGNTHIIPGFKVKAVDTIGAGDTHAGGMLAGLAKGMSLADAVLL 276 (289)
T ss_pred HHHHHhccCCeEEEEECCCcEEEEecCCCeEEecCCCCCCccCCCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 6777788999999999999999988 45667888888999999999999999999999999999998653
No 9
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-35 Score=236.05 Aligned_cols=219 Identities=35% Similarity=0.540 Sum_probs=186.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++.||+++++......+|+.+.+.++++|++.+..++.. +...+.++++.+..+...+.+|++
T Consensus 58 ~~vG~D~~g~~~~~~l~~~GVd~~~~~~~~~~~tg~~~i~~~~~g~r~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~ 136 (311)
T COG0524 58 GAVGDDDFGEFLLEELRKEGVDTSHVVTDEGATTGLALILVDEDGERTFVFYRGA-AALLLTPEDLDEDELAGADVLHIS 136 (311)
T ss_pred EEecCcHHHHHHHHHHHHcCCccceEEEcCCCcceEEEEEEcCCCceeEEEECCc-ccccCChHHcChHHHhhcCeeeEE
Confidence 5799999999999999999999999998888899999999999999999998654 556677777765677899999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++.+.... +...++++.+++.|.++++|++++...|. .+.+.++++++|++++|+.|++.++|. ........
T Consensus 137 ~~~l~~~~--~~~~~~~~~a~~~g~~v~~d~~~~~~~~~-----~~~~~~~l~~~d~~~~n~~E~~~l~g~-~~~~~~~~ 208 (311)
T COG0524 137 GIQLEIPP--EALLAALELAKAAGVTVSFDLNPRPALWD-----RELLEELLALADILFPNEEEAELLTGL-EEDAEAAA 208 (311)
T ss_pred EeecCCCh--HHHHHHHHHHHHcCCeEEEecCCCccccc-----hhhHHHHHhhCCEEeCCHHHHHHHhCC-CccHHHHH
Confidence 97654332 88899999999999999999999887775 678899999999999999999999987 22223344
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeee---cCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRV---PGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~---~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
..++..+++.+|+|+|++|+++++++...++ +.++++++|||||||+|+|||++++++|+++++|.++
T Consensus 209 ~~~~~~~~~~vvvt~G~~Ga~~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfl~~~~~g~~~~~a~~~ 279 (311)
T COG0524 209 ALLLAKGVKTVVVTLGAEGAVVFTGGGEVTVPVPAAFKVKVVDTTGAGDAFAAGFLAGLLEGKSLEEALRF 279 (311)
T ss_pred HHHhhcCCCEEEEEeCCCcEEEEeCCCceeeccCCCCccccccCCCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 6778899999999999999999998542333 3677889999999999999999999999999998753
No 10
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=6.3e-35 Score=242.47 Aligned_cols=219 Identities=20% Similarity=0.194 Sum_probs=175.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++.||++.++.. .+.+|+.++++++++|+++++.+. +++..+..+++....+++++++|+.
T Consensus 155 g~VG~D~~G~~i~~~L~~~GVd~~~~~~-~~~~Tg~~~ilv~~~gertii~~~--Ga~~~l~~~~~~~~~i~~adiv~l~ 231 (426)
T PLN02813 155 GSVGSDPLGDFYRTKLRRANVHFLSQPV-KDGTTGTVIVLTTPDAQRTMLSYQ--GTSSTVNYDSCLASAISKSRVLVVE 231 (426)
T ss_pred EEeCCChHHHHHHHHHHHcCCcccceec-CCCCceEEEEEEcCCCCceeeecc--CchhhCCccccCHHHHhcCCEEEEE
Confidence 4799999999999999999999998764 455899999999999999998874 4444455555555678999999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHH-HHHHHhhhCcEEeeCHHHHhhhcCCCC-cchHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARD-GIKSIWNHADLIKVSDDEVNFLTKGGD-AEKDD 158 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~l~~~dil~~n~~E~~~l~~~~~-~~~~~ 158 (230)
++.+..+...+.+.++++.+++.|.++++|++.... ....++ .+..+++++|++++|++|+..|+|... .+.++
T Consensus 232 g~~~~~~~~~~~~~~~~~~ak~~g~~v~~d~s~~~~----~~~~~~~l~~~ll~~vDil~~Ne~Ea~~l~g~~~~~~~~~ 307 (426)
T PLN02813 232 GYLWELPQTIEAIAQACEEAHRAGALVAVTASDVSC----IERHRDDFWDVMGNYADILFANSDEARALCGLGSEESPES 307 (426)
T ss_pred eeecCCCchHHHHHHHHHHHHHcCCEEEEECCCcch----hhhhHHHHHHHHHhcCCEEEeCHHHHHHHhCCCCCCCHHH
Confidence 865433334577889999999999999999874211 011223 334556899999999999999998642 22344
Q ss_pred HHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCC-Ccccccc
Q 044512 159 VVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDA-NIFNVKF 227 (230)
Q Consensus 159 ~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~-~~~~a~~ 227 (230)
+++.|. .+++.||||+|++|+++..++..+++++++++++|||||||+|+|||++++++|+ +++++.+
T Consensus 308 a~~~L~-~~~~~VVVT~G~~Ga~~~~~~~~~~~pa~~v~vVDTtGAGDAF~Agfl~~l~~G~~~l~~al~ 376 (426)
T PLN02813 308 ATRYLS-HFCPLVSVTDGARGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYAAGILYGLLRGVSDLRGMGE 376 (426)
T ss_pred HHHHHH-cCCCEEEEEeCCCCeEEEECCEEEEeCCCCCCcccCCChHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 555554 6889999999999999999888899999999999999999999999999999999 9998765
No 11
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=1.1e-34 Score=244.06 Aligned_cols=225 Identities=21% Similarity=0.287 Sum_probs=178.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecC--------CCcceEEEEEEecCCeeeEEEecCCCcccc---cc-ccccCc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDN--------HARTALAFVTLKKNGEREFMFYRNPSADML---LK-DSELNM 68 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~--------~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~---~~-~~~~~~ 68 (230)
++||+|.+|+.+++.|++.||+++++.... ...|+.++++++++|++.+........... +. ......
T Consensus 140 g~VG~D~~G~~i~~~L~~~GVd~~~v~~~~~~~~~~~~~~~T~~~~vlvd~~ger~~~~~~~~~~~~~~~~~~~l~~~~~ 219 (470)
T PLN02341 140 GHVGDEIYGKFLLDVLAEEGISVVGLIEGTDAGDSSSASYETLLCWVLVDPLQRHGFCSRADFGPEPAFSWISKLSAEAK 219 (470)
T ss_pred EEecCcHHHHHHHHHHHHcCCeeeEEEecCccccccccCCCceeEEEEEcCCCCceeeeccccccccchhhhhcccHHHH
Confidence 479999999999999999999999887654 346999999999888876543211111000 00 001113
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCC-CCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhh
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRL-PLWPSQDAARDGIKSIWNHADLIKVSDDEVNF 147 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~ 147 (230)
..+++++++|++++.+ .+.+.+.+.++++.+++.|.++++|++++. .+|...+...+.+.++++++|++++|++|+..
T Consensus 220 ~~l~~adiv~lsg~~~-~~~~~~~~~~~~~~Ak~~g~~V~~Dp~~~~~~~~~~~~~~~~~l~~~L~~~Dil~~Ne~Ea~~ 298 (470)
T PLN02341 220 MAIRQSKALFCNGYVF-DELSPSAIASAVDYAIDVGTAVFFDPGPRGKSLLVGTPDERRALEHLLRMSDVLLLTSEEAEA 298 (470)
T ss_pred hhhhcCCEEEEeceeC-CcCCHHHHHHHHHHHHHcCCEEEEeCCCcccccccChHHHHHHHHHHHhhCCEEEecHHHHHH
Confidence 4678999999999743 456678889999999999999999998763 34444444456688999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHhcC--ccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccc
Q 044512 148 LTKGGDAEKDDVVMSLWHDN--LKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNV 225 (230)
Q Consensus 148 l~~~~~~~~~~~~~~l~~~g--~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a 225 (230)
++|... .+++++.+...+ .+.||||+|++|+++++++..+++++++++++|||||||+|+|||++++++|+++++|
T Consensus 299 l~g~~~--~~~a~~~l~~~g~~~k~VVVTlG~~Ga~~~~~~~~~~vpa~~v~vVDTtGAGDaF~Agfl~gll~G~~l~ea 376 (470)
T PLN02341 299 LTGIRN--PILAGQELLRPGIRTKWVVVKMGSKGSILVTRSSVSCAPAFKVNVVDTVGCGDSFAAAIALGYIHNLPLVNT 376 (470)
T ss_pred HhCCCC--HHHHHHHHHhcCCCCCEEEEeeCCCCeEEEECCeeEEeCCCCcCCCCCcCccHHHHHHHHHHHHcCCCHHHH
Confidence 998743 345777777766 5899999999999999998888999999999999999999999999999999999998
Q ss_pred ccc
Q 044512 226 KFR 228 (230)
Q Consensus 226 ~~~ 228 (230)
.++
T Consensus 377 l~~ 379 (470)
T PLN02341 377 LTL 379 (470)
T ss_pred HHH
Confidence 753
No 12
>PRK11142 ribokinase; Provisional
Probab=100.00 E-value=1e-34 Score=233.62 Aligned_cols=210 Identities=22% Similarity=0.285 Sum_probs=175.2
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC--ccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN--MGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~v~ 78 (230)
+.||+|++|+.+++.|+++||+++++...++.+|+.+++.++++|++++..+. ++...+++++++ .+.+.+++++|
T Consensus 60 ~~vG~D~~g~~i~~~L~~~gV~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~v~ 137 (306)
T PRK11142 60 ACVGDDSIGESMRQQLAKDGIDTAPVSVIKGESTGVALIFVNDEGENSIGIHA--GANAALTPALVEAHRELIANADALL 137 (306)
T ss_pred EEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCCEEEEEECCCCCEEEEEeC--CccccCCHHHHHHHHhhhccCCEEE
Confidence 46899999999999999999999999888888999999999888999888763 444555655544 24578999998
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc---
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE--- 155 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~--- 155 (230)
+++. .+.+.+.++++.+++.|.++++|+++... ....+++++|++++|++|+..+++....+
T Consensus 138 ~~~~-----~~~~~~~~~~~~a~~~g~~v~~d~~~~~~----------~~~~~~~~~dil~~n~~Ea~~l~g~~~~~~~~ 202 (306)
T PRK11142 138 MQLE-----TPLETVLAAAKIAKQHGTKVILNPAPARE----------LPDELLALVDIITPNETEAEKLTGIRVEDDDD 202 (306)
T ss_pred EeCC-----CCHHHHHHHHHHHHHcCCEEEEECCCCcc----------cCHHHHhhCCEEcCCHHHHHHHhCCCCCChHH
Confidence 8752 24467788899999999999999975322 12467889999999999999999865433
Q ss_pred hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 156 KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 156 ~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
..++++.+.+.|++.||+|+|++|++++.++..+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 203 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~vvDt~GAGDaF~Agfi~~l~~g~~~~~al~ 274 (306)
T PRK11142 203 AAKAAQVLHQKGIETVLITLGSRGVWLSENGEGQRVPGFRVQAVDTIAAGDTFNGALVTALLEGKPLPEAIR 274 (306)
T ss_pred HHHHHHHHHHhCCCeEEEEECCCcEEEEeCCcceeccCCCcccccCCCchhHHHHHHHHHHHCCCCHHHHHH
Confidence 234567788889999999999999999988888899999999999999999999999999999999999865
No 13
>PTZ00247 adenosine kinase; Provisional
Probab=100.00 E-value=6e-35 Score=238.36 Aligned_cols=218 Identities=21% Similarity=0.244 Sum_probs=175.0
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCc----cccccccE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNM----GLIKQAKI 76 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~ 76 (230)
++||+|.+|+.+++.|+++||+++++. ..+.+|+++++++++ ++|+++.+ .+++..++.+++.. ..++++++
T Consensus 87 g~vG~D~~G~~i~~~l~~~GVd~~~~~-~~~~~Tg~~~i~v~~-~~r~~~~~--~ga~~~l~~~~i~~~~~~~~l~~~~~ 162 (345)
T PTZ00247 87 GCVGDDRFAEILKEAAEKDGVEMLFEY-TTKAPTGTCAVLVCG-KERSLVAN--LGAANHLSAEHMQSHAVQEAIKTAQL 162 (345)
T ss_pred EEeccchhHHHHHHHHHHcCCeeeccc-cCCCCcEEEEEEEcC-CCcccccC--cchhhcCChHHcCcHHHHHHHhhCCE
Confidence 479999999999999999999998875 566689999998865 78887765 45666677666653 26789999
Q ss_pred EEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCC---C
Q 044512 77 FHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGG---D 153 (230)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~---~ 153 (230)
+|++++.+. .+.+.+..+++.+++.|.++++|++... + .....+.+.++++++|++++|++|++.|+|.. .
T Consensus 163 v~~~g~~~~--~~~~~~~~~~~~a~~~g~~v~~d~~~~~--~--~~~~~~~~~~~l~~~Dil~~N~~Ea~~l~g~~~~~~ 236 (345)
T PTZ00247 163 YYLEGFFLT--VSPNNVLQVAKHARESGKLFCLNLSAPF--I--SQFFFERLLQVLPYVDILFGNEEEAKTFAKAMKWDT 236 (345)
T ss_pred EEEEEEEec--ccHHHHHHHHHHHHHcCCEEEEECCcHH--H--HHHHHHHHHHHHhhCCEEEeCHHHHHHHhhccCCCc
Confidence 999996432 2557889999999999999999986310 0 11234557889999999999999999999832 1
Q ss_pred cchHHHHHHHHh------cCccEEEEEecCCceEEEecCceeeecCccc---cccCCCCcchHHHHHHHHHHHcCCCccc
Q 044512 154 AEKDDVVMSLWH------DNLKLLLVTYGAKGCGYFTKKFKGRVPGFSV---KTIDTTGAGDAFVGSFLVSVAKDANIFN 224 (230)
Q Consensus 154 ~~~~~~~~~l~~------~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~---~~~dt~GaGDaf~ag~~~~l~~g~~~~~ 224 (230)
.+.+++++.+.. .+.+.||||+|++|+++++++..++++++++ +++|||||||+|+|||++++++|+++++
T Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~~~~vVDTtGAGDaF~agfl~~l~~g~~~~~ 316 (345)
T PTZ00247 237 EDLKEIAARIAMLPKYSGTRPRLVVFTQGPEPTLIATKDGVTSVPVPPLDQEKIVDTNGAGDAFVGGFLAQYANGKDIDR 316 (345)
T ss_pred cCHHHHHHHHHhccccccCCCCEEEEecCCCceEEEECCEEEEEeccccCCCCccCCCChHHHHHHHHHHHHHcCCCHHH
Confidence 234456666553 2578999999999999999988888888877 5999999999999999999999999999
Q ss_pred cccc
Q 044512 225 VKFR 228 (230)
Q Consensus 225 a~~~ 228 (230)
|.++
T Consensus 317 al~~ 320 (345)
T PTZ00247 317 CVEA 320 (345)
T ss_pred HHHH
Confidence 8753
No 14
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=100.00 E-value=8.8e-35 Score=237.97 Aligned_cols=215 Identities=24% Similarity=0.268 Sum_probs=172.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|++|+.+++.|++.||+++++... +.+|+.++++++++|+|++..+ .++...+...++....+++++++|++
T Consensus 108 g~VG~D~~G~~~~~~L~~~GI~~~~~~~~-~~~Tg~~~v~v~~dgert~~~~--lg~~~~l~~~~~~~~~~~~~~~v~v~ 184 (367)
T PLN02379 108 GACGDDEQGKLFVSNMGFSGVDLSRLRAK-KGPTAQCVCLVDALGNRTMRPC--LSSAVKLQADELTKEDFKGSKWLVLR 184 (367)
T ss_pred EEeCCChhHHHHHHHHHHcCCCccCcccC-CCCCceEEEEECCCCCccccCC--ccccccCChhHCCHHHHhcCCEEEEE
Confidence 47999999999999999999999988544 4589999999998999987654 34445566666666778999999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCcEEeeCHHHHhhhcCCCC-cchH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN--HADLIKVSDDEVNFLTKGGD-AEKD 157 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~~-~~~~ 157 (230)
+.. .+.+.+.++++.+++.|.++++|++.... ....++.+.++++ ++|++++|++|+..+++... .+.+
T Consensus 185 -~~~---~~~~~~~~~~~~A~~~g~~v~lD~s~~~~----v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~~~~~~~~~~ 256 (367)
T PLN02379 185 -YGF---YNLEVIEAAIRLAKQEGLSVSLDLASFEM----VRNFRSPLLQLLESGKIDLCFANEDEARELLRGEQESDPE 256 (367)
T ss_pred -ccc---CCHHHHHHHHHHHHHcCCEEEEeccchhh----hhhhhHHHHHHhhcCCccEEEcCHHHHHHHhcCCCCCCHH
Confidence 433 23578889999999999999999974211 1123456677775 89999999999999987432 2233
Q ss_pred HHHHHHHhcCccEEEEEecCCceEEEecCceeeecCcc-ccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 158 DVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFS-VKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 158 ~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~-~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.+.+ +...+++.+|||+|++|++++.+++.+++++++ .+++||+||||+|+|||+|++.+|++++++.+
T Consensus 257 ~~~~-~l~~~~~~vvvT~G~~Ga~~~~~~~~~~v~a~~~~~vVDTtGAGDaFaagfl~gl~~G~~l~~a~~ 326 (367)
T PLN02379 257 AALE-FLAKYCNWAVVTLGSKGCIARHGKEVVRVPAIGETNAVDATGAGDLFASGFLYGLIKGLSLEECCK 326 (367)
T ss_pred HHHH-HHHhcCCEEEEEECCCCeEEEECCEEEEecCCCCCCcccCCChhHHHHHHHHHHHHCCCCHHHHHH
Confidence 3444 445678999999999999999988888999887 47999999999999999999999999998875
No 15
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=100.00 E-value=2.5e-34 Score=229.82 Aligned_cols=210 Identities=27% Similarity=0.366 Sum_probs=175.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCc--cccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNM--GLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~v~ 78 (230)
|.||+|.+|+.+++.|+++||+++++...++.+|+++++.++++|++++..+. ++...++++.+.. ..++.+++++
T Consensus 57 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~ 134 (292)
T cd01174 57 GAVGDDAFGDELLENLREEGIDVSYVEVVVGAPTGTAVITVDESGENRIVVVP--GANGELTPADVDAALELIAAADVLL 134 (292)
T ss_pred EEEcCCccHHHHHHHHHHcCCCceEEEEcCCCCceeEEEEEcCCCceEEEEeC--CCCCCCCHHHHHHHHHhcccCCEEE
Confidence 46899999999999999999999999777778999999999888999988763 3444444444432 4578999998
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcch--
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEK-- 156 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~-- 156 (230)
+++ +.+.+.+..+++.+++.+.++++|++.... ...++++++|++++|++|++.+++....+.
T Consensus 135 ~~~-----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~----------~~~~~~~~~dil~~n~~E~~~l~~~~~~~~~~ 199 (292)
T cd01174 135 LQL-----EIPLETVLAALRAARRAGVTVILNPAPARP----------LPAELLALVDILVPNETEAALLTGIEVTDEED 199 (292)
T ss_pred EeC-----CCCHHHHHHHHHHHHhcCCEEEEeCCCcCc----------CcHHHHhhCCEEeeCHHHHHHHhCCCCCCHHH
Confidence 865 224567888999999999999999985422 225788899999999999999998765443
Q ss_pred -HHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 157 -DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 157 -~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.++++.+.+.|++.||+|+|++|+++++++..+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 200 ~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vdt~GaGD~F~ag~l~~l~~g~~~~~al~ 271 (292)
T cd01174 200 AEKAARLLLAKGVKNVIVTLGAKGALLASGGEVEHVPAFKVKAVDTTGAGDTFIGALAAALARGLSLEEAIR 271 (292)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCceEEEeCCceEEecCCCcccCCCCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 24567788899999999999999999998888899998899999999999999999999999999998764
No 16
>PTZ00292 ribokinase; Provisional
Probab=100.00 E-value=1.7e-34 Score=234.13 Aligned_cols=215 Identities=27% Similarity=0.348 Sum_probs=175.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEe-cCCeeeEEEecCCCccccccccccCc--ccccc-ccE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLK-KNGEREFMFYRNPSADMLLKDSELNM--GLIKQ-AKI 76 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~--~~l~~-~~~ 76 (230)
++||+|++|+.+++.|++.||+++++...++.+|+.++++++ .+|++++..+ .+++..++++.++. ..+.+ +++
T Consensus 73 s~vG~D~~g~~i~~~l~~~GI~~~~~~~~~~~~t~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~~~~~~~~~i~~~~~~ 150 (326)
T PTZ00292 73 GMVGTDGFGSDTIKNFKRNGVNTSFVSRTENSSTGLAMIFVDTKTGNNEIVII--PGANNALTPQMVDAQTDNIQNICKY 150 (326)
T ss_pred EEECCChhHHHHHHHHHHcCCChhhEEEcCCCCCcEEEEEEeCCCCceEEEEe--CCccccCCHHHHHHHHHHhhhhCCE
Confidence 479999999999999999999999997777779999999998 7888988776 34555566555432 33566 788
Q ss_pred EEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcch
Q 044512 77 FHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEK 156 (230)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~ 156 (230)
+++++ ..+.+...++++.+++.|.++++|++++...|. .+.+.++++++|++++|++|++.+++....+.
T Consensus 151 ~~~~~-----~~~~~~~~~~~~~a~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dii~~n~~E~~~l~g~~~~~~ 220 (326)
T PTZ00292 151 LICQN-----EIPLETTLDALKEAKERGCYTVFNPAPAPKLAE-----VEIIKPFLKYVSLFCVNEVEAALITGMEVTDT 220 (326)
T ss_pred EEECC-----CCCHHHHHHHHHHHHHcCCEEEEECCCCccccc-----cccHHHHHhcCCEEcCCHHHHHHHhCCCCCCh
Confidence 86653 234567788889999999999999987654332 25678889999999999999999998654332
Q ss_pred ---HHHHHHHHhcCccEEEEEecCCceEEEecCc-eeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 157 ---DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKF-KGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 157 ---~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~-~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.++++.++..+++.||+|+|++|++++.++. .+++++++++++||+||||+|+|||++++++|++++++.+
T Consensus 221 ~~~~~~~~~l~~~g~~~vvvT~G~~Ga~~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~ 295 (326)
T PTZ00292 221 ESAFKASKELQQLGVENVIITLGANGCLIVEKENEPVHVPGKRVKAVDTTGAGDCFVGSMAYFMSRGKDLKESCK 295 (326)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCCCcEEEEeCCCceEEccCCccccCCCcchHHHHHHHHHHHHHCCCCHHHHHH
Confidence 2456677788999999999999999988764 5889998899999999999999999999999999999865
No 17
>PRK15074 inosine/guanosine kinase; Provisional
Probab=100.00 E-value=3.4e-34 Score=236.87 Aligned_cols=210 Identities=18% Similarity=0.214 Sum_probs=170.0
Q ss_pred CCCCCC-hhHHHHHHHHH--HCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEE
Q 044512 1 MQFGDD-EFGHMLVNILK--QNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIF 77 (230)
Q Consensus 1 t~vG~D-~~g~~i~~~l~--~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 77 (230)
++||+| .+|+++++.|+ +.||+++++.... .+|+.++++++++|+|++..+ .+++..+++++++...+++++++
T Consensus 114 g~VGdDd~~G~~~~~~L~~~~~GVdt~~v~~~~-~~TG~~~VlV~~dGeRt~~t~--~GA~~~Lt~edld~~~i~~a~il 190 (434)
T PRK15074 114 GVMSSNIEIGSYAYRYLCNTSSRTDLNYLQGVD-GPIGRCFTLISEDGERTFAIS--PGHMNQLRPESIPEDVIAGASAL 190 (434)
T ss_pred EEeCCCHHHHHHHHHHhhhhhCCccCcceEEcC-CCCEEEEEEECCCCCEEEEEe--cChhhcCChhHCCHhHhccCCEE
Confidence 379999 79999999997 6899999987554 489999999999999999987 46777888888877788999999
Q ss_pred EEcccccc---CchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHH-HHHhhhCcEEeeCHHHHhhhcCCCC
Q 044512 78 HYGSISLI---SEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGI-KSIWNHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 78 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~l~~~dil~~n~~E~~~l~~~~~ 153 (230)
|++++.+. .+...+.+.++++.+++.|.++++|++.+..++.. ++.+ ..+++++|++++|++|+..|+|..
T Consensus 191 yl~Gy~l~~~~~~~~~~a~~~al~~Ake~G~~VslD~s~~~~v~~~----~~~~~e~l~~~vDILf~NeeEa~~LtG~~- 265 (434)
T PRK15074 191 VLTAYLVRCKPGEPMPEATMKAIEYAKKHNVPVVLTLGTKFVIEDN----PQWWQEFLKEHVSILAMNEDEAEALTGES- 265 (434)
T ss_pred EEeeeehhcccCCCcHHHHHHHHHHHHHcCCEEEEECcchhhcccc----HHHHHHHHHhcCCEEEcCHHHHHHHhCCC-
Confidence 99998665 23446788899999999999999999965432221 2222 345579999999999999999864
Q ss_pred cchHHHHHHHHhcCccEEEEEecCCceEEEecCc-------e--------------------------------eeecCc
Q 044512 154 AEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKF-------K--------------------------------GRVPGF 194 (230)
Q Consensus 154 ~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~-------~--------------------------------~~~~~~ 194 (230)
+.+++++.+.. +++.||||+|++|++++..++ . .++++.
T Consensus 266 -d~eea~~~L~~-~~~~VVVTlG~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (434)
T PRK15074 266 -DPLLASDKALD-WVDLVLCTAGPIGLYMAGYTEDEAKRETQHPLLPGAIAEFNRYEFSRAMRKKDCQNPLRVYSHIAPY 343 (434)
T ss_pred -CHHHHHHHHHc-CCCEEEEEECCCCEEEEecccccccCceeeeccccccccccchhcccchhccccccccccccccCcc
Confidence 33456777764 578999999999999975222 1 267777
Q ss_pred ---cccccCCCCcchHHHHHHHHHHHcCC
Q 044512 195 ---SVKTIDTTGAGDAFVGSFLVSVAKDA 220 (230)
Q Consensus 195 ---~~~~~dt~GaGDaf~ag~~~~l~~g~ 220 (230)
+++++|||||||+|+|||+|+|.+|+
T Consensus 344 ~~~~~~~vDttGAGD~f~~gfl~~l~~g~ 372 (434)
T PRK15074 344 MGGPEKIMNTNGAGDGALSALLHDITANS 372 (434)
T ss_pred cCCCCcceeCCCcHHHHHHHHHHHHHCCC
Confidence 67899999999999999999999997
No 18
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=100.00 E-value=3.5e-33 Score=221.83 Aligned_cols=203 Identities=27% Similarity=0.380 Sum_probs=165.0
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++.||+++++...++.+|+.+++.++++|++++..++ ++...+..++ ....+++++++|++
T Consensus 57 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~ 133 (279)
T cd01942 57 AAVGEDFHGRLYLEELREEGVDTSHVRVVDEDSTGVAFILTDGDDNQIAYFYP--GAMDELEPND-EADPDGLADIVHLS 133 (279)
T ss_pred EEecCCcchHHHHHHHHHcCCCccceEEcCCCCcceEEEEEcCCCCEEEEecC--CcccccccCC-chhhhcccCEEEeC
Confidence 47899999999999999999999999777777899999999888888876553 4444444443 34567899999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHH---hhhcCCCCcchH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEV---NFLTKGGDAEKD 157 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~---~~l~~~~~~~~~ 157 (230)
+.. .+.++++.+++.|.++++|++++...|. .+.+.++++++|++++|++|+ ..+.+.....
T Consensus 134 ~~~--------~~~~~~~~~~~~g~~v~~D~~~~~~~~~-----~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~-- 198 (279)
T cd01942 134 SGP--------GLIELARELAAGGITVSFDPGQELPRLS-----GEELEEILERADILFVNDYEAELLKERTGLSEAE-- 198 (279)
T ss_pred Cch--------HHHHHHHHHHHcCCeEEEcchhhhhhcc-----HHHHHHHHhhCCEEecCHHHHHHHHhhcCCChHH--
Confidence 852 4567777788889999999987554443 356788899999999999999 4555543211
Q ss_pred HHHHHHHhcCccEEEEEecCCceEEEecCceeeecCc-cccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 158 DVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGF-SVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 158 ~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~-~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
...+++.||+|+|++|++++.++..++++++ +++++||+||||+|+|||++++++|+++++|.+
T Consensus 199 ------~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~l~~al~ 263 (279)
T cd01942 199 ------LASGVRVVVVTLGPKGAIVFEDGEEVEVPAVPAVKVVDTTGAGDAFRAGFLYGLLRGYDLEESLR 263 (279)
T ss_pred ------HhcCCCEEEEEECCCceEEEECCceEEccCcCcCCCcCCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 1278899999999999999998888899886 889999999999999999999999999999865
No 19
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=100.00 E-value=1.3e-33 Score=226.50 Aligned_cols=218 Identities=30% Similarity=0.415 Sum_probs=181.1
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
|.||+|.+|+.+++.|++.||+++++.+..+.+|+.+++.++++|++++..+. +.......+++.+..+.+++++|++
T Consensus 57 ~~vG~D~~g~~i~~~l~~~gv~~~~i~~~~~~~t~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (301)
T PF00294_consen 57 GKVGDDFFGEIILEELKERGVDTSYIPRDGDEPTGRCLIIVDPDGERTFVFSP--GANSDLTPDELDEEAIDEADILHLS 134 (301)
T ss_dssp EEEESSHHHHHHHHHHHHTTEEETTEEEESSSEEEEEEEEEETTSEEEEEEEE--GGGGGGGHHHHHHHHHHTESEEEEE
T ss_pred eeccCcchhhhhhhccccccccccccccccccccceeEeeecccccceeeecc--ccccccccccccccccccccceeec
Confidence 46899999999999999999999999988888999999999988999988873 3444455544456678899999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCC--CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAG--VLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDD 158 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 158 (230)
+..+..+.+.+....+.+.+++.+ .+++.++.. ....+.+.++++.+|++++|++|+..+++....+.++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 206 (301)
T PF00294_consen 135 GVSLPEGIPEDLLEALAKAAKKNGPFDPVFRDPSW--------DDLREDLKELLPYADILKPNEEEAEALTGSKIDDPED 206 (301)
T ss_dssp SGHCSTTSHHHHHHHHHHHHHHTTEEEEEEEGGGS--------HHHHHHHHHHHHTSSEEEEEHHHHHHHHTCSTSSHHH
T ss_pred ccccccccccceeeecccccccccccccccccccc--------cccchhhhhhccccchhccccccccccccccccchhh
Confidence 944566777788888888888877 345555541 1156888899999999999999999999998655554
Q ss_pred HH---HHHHhcCccEEEEEecCCceEEEecCceeeecC-ccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 159 VV---MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPG-FSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 159 ~~---~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~-~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
+. +.++..+++.+++|+|++|+++++++..+++++ ++++++|++||||+|+|||++++++|+++++|.++
T Consensus 207 ~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGD~f~A~~i~~l~~~~~~~~a~~~ 280 (301)
T PF00294_consen 207 ALAALRELQARGVKIVIVTLGEDGALYYTNDESYHVPPVPPVNVVDTTGAGDAFAAGFIYGLLSGMSLEEALKF 280 (301)
T ss_dssp HHHHHHHHHHTTSSEEEEEEGGGEEEEEETTEEEEEEEESSSSSSSCTTHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hhccccccchhhhhhhhccccccCcccccccccccccccccccccceeccchhhhHHHHHHHHcCCCHHHHHHH
Confidence 44 455568999999999999999999888888888 56899999999999999999999999999998653
No 20
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=100.00 E-value=8.5e-33 Score=221.14 Aligned_cols=211 Identities=28% Similarity=0.392 Sum_probs=173.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC--ccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN--MGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~v~ 78 (230)
|.||+|.+|+.+++.|+++||+++++....+.+|++++++++++|++++..+ .+++..+.++++. .+.+..+++++
T Consensus 52 ~~vG~D~~g~~i~~~l~~~gi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (293)
T TIGR02152 52 GKVGDDAFGDELLENLKSNGIDTEYVGTVKDTPTGTAFITVDDTGENRIVVV--AGANAELTPEDIDAAEALIAESDIVL 129 (293)
T ss_pred EEecCCccHHHHHHHHHHcCCCeeEEEEcCCCCCceEEEEEcCCCCEEEEEE--CCcCCcCCHHHHHHHHhhhccCCEEE
Confidence 5789999999999999999999999987777789999999988888888776 3444455555544 24568889987
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc---
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE--- 155 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~--- 155 (230)
+++ +.+.+.+.++++.+++.+.++++|++.... ....++++++|++++|++|+..+++....+
T Consensus 130 ~~~-----~~~~~~~~~~~~~~~~~~~~v~~D~~~~~~---------~~~~~~~~~~d~l~~n~~E~~~l~~~~~~~~~~ 195 (293)
T TIGR02152 130 LQL-----EIPLETVLEAAKIAKKHGVKVILNPAPAIK---------DLDDELLSLVDIITPNETEAEILTGIEVTDEED 195 (293)
T ss_pred Eec-----CCCHHHHHHHHHHHHHcCCEEEEECCcCcc---------cchHHHHhcCCEEccCHHHHHHHhCCCCCCcch
Confidence 763 334567888999999999999999975321 112577899999999999999999875332
Q ss_pred hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 156 KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 156 ~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
..++++.+.+.|++.++||+|++|+++++++..+++++++++++||+||||+|+|||++++.+|+++++|.+
T Consensus 196 ~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~vdt~GAGDaf~Ag~l~~l~~g~~~~~al~ 267 (293)
T TIGR02152 196 AEKAAEKLLEKGVKNVIITLGSKGALLVSKDESKLIPAFKVKAVDTTAAGDTFNGAFAVALAEGKSLEDAIR 267 (293)
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCceEEEeCCceeEccCCCCceeCCCCcHHHHHHHHHHHHHCCCCHHHHHH
Confidence 235667788889999999999999999998888889988889999999999999999999999999998864
No 21
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=100.00 E-value=1e-32 Score=219.80 Aligned_cols=206 Identities=22% Similarity=0.283 Sum_probs=167.1
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
|+||+|.+|+.+++.|++.||+++++...++.+|+.+++ ...+|++....++ .....+..++++...+++++++|++
T Consensus 57 ~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~i~ 133 (284)
T cd01945 57 GVVGDDAIGRLILAELAAEGVDTSFIVVAPGARSPISSI-TDITGDRATISIT--AIDTQAAPDSLPDAILGGADAVLVD 133 (284)
T ss_pred EEecCchHHHHHHHHHHHcCCCccceeecCCCCCccEEE-EccCCCceEEEec--CCCCCCCcccCCHHHhCcCCEEEEc
Confidence 579999999999999999999999998887778888876 3445666655543 2333455556655567999999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
+.. .+...++++.+++.|.++++|+.+... .+ +.++++++|++++|++|++.+++.... +++
T Consensus 134 ~~~------~~~~~~~~~~~~~~g~~v~~~~~~~~~--------~~-~~~~~~~~dil~~n~~e~~~l~~~~~~---~~~ 195 (284)
T cd01945 134 GRQ------PEAALHLAQEARARGIPIPLDLDGGGL--------RV-LEELLPLADHAICSENFLRPNTGSADD---EAL 195 (284)
T ss_pred CCC------HHHHHHHHHHHHHcCCCeeEeccCCcc--------cc-hHHHhccCCEEEeChhHHhhhcCCCHH---HHH
Confidence 852 256778889999999877776653211 12 678889999999999999999886432 567
Q ss_pred HHHHhcCccEEEEEecCCceEEEe-cCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFT-KKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~-~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.+.+.+++.||||+|++|++++. +++.+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 196 ~~l~~~~~~~vivt~G~~G~~~~~~~~~~~~~~~~~~~vvDt~GAGDaf~ag~l~~l~~g~~~~~al~ 263 (284)
T cd01945 196 ELLASLGIPFVAVTLGEAGCLWLERDGELFHVPAFPVEVVDTTGAGDVFHGAFAHALAEGMPLREALR 263 (284)
T ss_pred HHHHhcCCcEEEEEECCCCeEEEcCCCCEEecCCCccccccCCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 778889999999999999999998 6678899988889999999999999999999999999998864
No 22
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=100.00 E-value=2.5e-32 Score=215.29 Aligned_cols=205 Identities=24% Similarity=0.293 Sum_probs=163.4
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|++|+.+++.|++.||+++++...++ +|+.+++. .++|++++..++. +......+.+.....+++++++|++
T Consensus 43 ~~vG~D~~g~~i~~~l~~~gI~~~~v~~~~~-~t~~~~~~-~~~g~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~ 119 (264)
T cd01940 43 GAVGNDDAGAHVRSTLKRLGVDISHCRVKEG-ENAVADVE-LVDGDRIFGLSNK-GGVAREHPFEADLEYLSQFDLVHTG 119 (264)
T ss_pred ecccCchhHHHHHHHHHHcCCChhheEEcCC-CCceEEEE-ecCCceEEEeecC-CcHHhcccCcccHhHHhcCCEEEEc
Confidence 5799999999999999999999999987554 78888755 4678888776542 2222222222233567899999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++.. .+.+.++++.+++.+.++++|++++ |. .+.+.++++++|++++|++|... .+..+++
T Consensus 120 ~~~~-----~~~~~~~~~~a~~~g~~v~~D~~~~---~~-----~~~~~~~~~~~d~~~~~~~~~~~------~~~~~~~ 180 (264)
T cd01940 120 IYSH-----EGHLEKALQALVGAGALISFDFSDR---WD-----DDYLQLVCPYVDFAFFSASDLSD------EEVKAKL 180 (264)
T ss_pred cccc-----HHHHHHHHHHHHHcCCEEEEcCccc---CC-----HHHHHhhcccCCEEEechhhcCc------chHHHHH
Confidence 7632 3577889999999999999999865 22 23467788999999999887531 2334567
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCC-cccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDAN-IFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~-~~~a~~ 227 (230)
+.+...+++.||+|+|++|++++.++..+++++++++++||+||||+|+|||++++++|++ ++++.+
T Consensus 181 ~~l~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~~al~ 248 (264)
T cd01940 181 KEAVSRGAKLVIVTRGEDGAIAYDGAVFYSVAPRPVEVVDTLGAGDSFIAGFLLSLLAGGTAIAEAMR 248 (264)
T ss_pred HHHHHcCCCEEEEEECCCCeEEEeCCeEEecCCcCCCCCCCCCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 7788899999999999999999998888899988999999999999999999999999999 998765
No 23
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.9e-33 Score=215.30 Aligned_cols=214 Identities=56% Similarity=0.910 Sum_probs=188.0
Q ss_pred CCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEcc
Q 044512 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGS 81 (230)
Q Consensus 2 ~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~ 81 (230)
+||+|.+|+.+++.|++.||+++++....+.+|+.+.+.+..+|++.+.+++++..++.....+++.+.++.+.++|...
T Consensus 68 kvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v~~dG~~~~~~v~gan~~~~~~~se~~~~~i~~ak~~~~q~ 147 (330)
T KOG2855|consen 68 KVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITVSKDGENRIIFVRGANADMLPEDSELNLEVIKEAKVFHCQS 147 (330)
T ss_pred cccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEEccCCceEEEEEecCchhcCcccccccHHHHhhccEEEEee
Confidence 69999999999999999999999999999999999999999999999999877777777777788888999999999998
Q ss_pred ccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHHH
Q 044512 82 ISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVM 161 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~ 161 (230)
..+............++.++..+..+++||..+..+|+.....+..+..++..+|++.++.+|+..++|.... +..
T Consensus 148 ei~~~~~~~s~~~~~~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~e~~fl~~~~~~---~~~- 223 (330)
T KOG2855|consen 148 EILIEEPMRSLHIAAVKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQELAFLTGIEDD---KIL- 223 (330)
T ss_pred ecCCcchhHHHHHhhhhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHHHHHHhccCccc---hHH-
Confidence 7776665555555556677777878888999999999987777777999999999999999999999988332 344
Q ss_pred HHHhcCccEEEEEecCCceEEEecCcee-eecCccccccCCCCcchHHHHHHHHHHHcC
Q 044512 162 SLWHDNLKLLLVTYGAKGCGYFTKKFKG-RVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219 (230)
Q Consensus 162 ~l~~~g~~~vvvt~g~~g~~~~~~~~~~-~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g 219 (230)
.|+..+.+.||||+|++|+.+++++..- ++++.+++++|||||||+|+|||+.+|.+|
T Consensus 224 ~L~~~~~k~viVTlG~kG~~y~tk~~~~~~v~~~~V~~VDtTGAGDsFvgal~~~L~~~ 282 (330)
T KOG2855|consen 224 KLWHMKLKLVIVTLGEKGCRYYTKDFKGSHVPAFKVKAVDTTGAGDSFVGALAVQLVRG 282 (330)
T ss_pred HHhccCCCEEEEEeCCCceEEEecCCCCCCCCCcccccccCCCchHHHHHHHHHHHhhc
Confidence 7777777999999999999999998555 899999999999999999999999999999
No 24
>PLN02548 adenosine kinase
Probab=100.00 E-value=3.1e-32 Score=221.41 Aligned_cols=217 Identities=20% Similarity=0.248 Sum_probs=165.8
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC----ccccccccE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN----MGLIKQAKI 76 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 76 (230)
++||+|.+|+.+++.|+++||+++++. ..+.+|+.+++.++ +|+|++..+. .+...+..+++. .+.++.+++
T Consensus 76 g~vG~D~~g~~i~~~L~~~gVd~~~~~-~~~~~T~~~~i~~~-~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (332)
T PLN02548 76 GCIGKDKFGEEMKKCATAAGVNVHYYE-DESTPTGTCAVLVV-GGERSLVANL--SAANCYKVEHLKKPENWALVEKAKF 151 (332)
T ss_pred EEEcCChhHHHHHHHHHHcCCceeeec-cCCCCCceEEEEEe-cCCceeeecc--chhhcCCHHHhcChhhHhHHhhCCE
Confidence 468999999999999999999999875 45668999988885 6888876552 333333333322 335688999
Q ss_pred EEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCC---
Q 044512 77 FHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGD--- 153 (230)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~--- 153 (230)
+|++++.+. .+.+.+..+++.+++.+.++.+|++. .+|. ....+.+.++++++|++++|++|+..+++...
T Consensus 152 v~~~g~~~~--~~~~~~~~~~~~a~~~g~~~~~~~~~--~~~~--~~~~~~l~~~l~~~dil~~n~~E~~~l~g~~~~~~ 225 (332)
T PLN02548 152 YYIAGFFLT--VSPESIMLVAEHAAANNKTFMMNLSA--PFIC--EFFKDQLMEALPYVDFLFGNETEARTFAKVQGWET 225 (332)
T ss_pred EEEEEEEcc--CCHHHHHHHHHHHHHcCCEEEEECCC--hhHH--HHhHHHHHHHHhhCCEEEecHHHHHHHhCccCCCc
Confidence 999986442 34567788888899999888888763 2231 22356688999999999999999999988533
Q ss_pred cchHHHHHHHHh------cCccEEEEEecCCceEEEecCceeeecCc---cccccCCCCcchHHHHHHHHHHHcCCCccc
Q 044512 154 AEKDDVVMSLWH------DNLKLLLVTYGAKGCGYFTKKFKGRVPGF---SVKTIDTTGAGDAFVGSFLVSVAKDANIFN 224 (230)
Q Consensus 154 ~~~~~~~~~l~~------~g~~~vvvt~g~~g~~~~~~~~~~~~~~~---~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~ 224 (230)
.+..+.++.+.. .+++.||+|+|++|++++.++..+++++. +++++||+||||+|+|||++++++|+++++
T Consensus 226 ~~~~~~~~~l~~~~~~~g~~~~~vvvT~G~~G~~~~~~~~~~~~pa~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~l~e 305 (332)
T PLN02548 226 EDVEEIALKISALPKASGTHKRTVVITQGADPTVVAEDGKVKEFPVIPLPKEKLVDTNGAGDAFVGGFLSQLVQGKDIEE 305 (332)
T ss_pred ccHHHHHHHHHHhhhhccccCCEEEEEeCCCcEEEEECCeEEEeccccCCcCccccCCCchHHHHHHHHHHHHcCCCHHH
Confidence 223334444432 25789999999999999988888887753 457999999999999999999999999999
Q ss_pred ccc
Q 044512 225 VKF 227 (230)
Q Consensus 225 a~~ 227 (230)
|.+
T Consensus 306 al~ 308 (332)
T PLN02548 306 CVR 308 (332)
T ss_pred HHH
Confidence 865
No 25
>PRK09850 pseudouridine kinase; Provisional
Probab=100.00 E-value=1.6e-32 Score=221.41 Aligned_cols=212 Identities=19% Similarity=0.186 Sum_probs=165.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC--ccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN--MGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~v~ 78 (230)
++||+|.+|+.+++.|++.||+++++...++.+|+.++++++++|++++.++. .++...+....+. .+.++++++++
T Consensus 61 g~vG~D~~g~~i~~~l~~~gVd~~~~~~~~~~~T~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~ 139 (313)
T PRK09850 61 SAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLDNTGEMLVAIND-MNISNAITAEYLAQHREFIQRAKVIV 139 (313)
T ss_pred EEecCchhHHHHHHHHHHcCCCchheeecCCCCceEEEEEecCCCCEEEEecC-chHhhhCCHHHHHHHHHHHhcCCEEE
Confidence 47999999999999999999999998777777899999999988998876642 3333344433332 23477899987
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc---c
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA---E 155 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~---~ 155 (230)
+++. .+.+.+..+++.+ .++++++||++. |. ...+.++++++|++++|+.|+..|+|.... +
T Consensus 140 ~~~~-----~~~~~~~~~~~~~--~g~~v~~D~~~~---~~-----~~~~~~~l~~~dil~~N~~Ea~~l~g~~~~~~~~ 204 (313)
T PRK09850 140 ADCN-----ISEEALAWILDNA--ANVPVFVDPVSA---WK-----CVKVRDRLNQIHTLKPNRLEAETLSGIALSGRED 204 (313)
T ss_pred EeCC-----CCHHHHHHHHHhc--cCCCEEEEcCCH---HH-----HHHHHhhhccceEEccCHHHHHHHhCCCCCCHHH
Confidence 7652 2345555555533 578999999742 11 234677889999999999999999986533 2
Q ss_pred hHHHHHHHHhcCccEEEEEecCCceEEEecC-ceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 156 KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKK-FKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 156 ~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~-~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
.+++++.+.+.|++.||||+|++|++++.++ ...++++++++++|||||||+|+|||++++.+|+++++|.++
T Consensus 205 ~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~~vvDttGAGDaF~agfi~~l~~g~~~~eal~~ 278 (313)
T PRK09850 205 VAKVAAWFHQHGLNRLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESVRF 278 (313)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCceEEEEcCCCCeEecCCCCcccccCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3456677888899999999999999998753 556778888899999999999999999999999999998753
No 26
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=100.00 E-value=2.9e-32 Score=220.62 Aligned_cols=217 Identities=16% Similarity=0.172 Sum_probs=170.1
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
+++|+| +|+.+++.|+++||++++ ....+.+|+.+++.++++|++.+... .+++..+..++++...+..++++|++
T Consensus 52 ~~vG~D-~G~~l~~~L~~~GVd~~~-~~~~~~~Tg~~~v~~~~~g~r~~~~~--~~~~~~~~~~~l~~~~~~~a~~~hl~ 127 (328)
T cd01943 52 VDKGSD-FPKSVEDELESWGTGMVF-RRDPGRLTTRGLNIYDGNDRRFFKYL--TPKKRIDVSDDLNSTPLIRSSCIHLI 127 (328)
T ss_pred EecCCC-CCHHHHHHHHhcCCceEE-EeCCCCcchhhhhhcCCCCcceeeec--CcccccccccccccccccCCCeEEEE
Confidence 368999 999999999999999998 66677789999988888888877665 33446667777766667899999997
Q ss_pred cccccCchHHHHHHHHHHHHHH------CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc
Q 044512 81 SISLISEPCRSAHMAALKAAKD------AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA 154 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 154 (230)
+... ...+...++++.+++ .+.++++|+++... .....+.+.++++++|++++|++|+..+++....
T Consensus 128 ~~~~---~~~~~~~~~~~~a~~~~~d~~~g~~~~~d~~~~~~----~~~~~~~l~~~l~~~dil~~n~~Ea~~l~g~~~~ 200 (328)
T cd01943 128 CSPE---RCASIVDDIINLFKLLKGNSPTRPKIVWEPLPDSC----DPENLEDLLQALPRVDVFSPNLEEAARLLGLPTS 200 (328)
T ss_pred CCHH---HHHHHHHHHHHHHHhhccccCCccEEEEecCCccc----ChhhHHHHHHHhccCCEECCCHHHHHHHhCCCCC
Confidence 7421 133677888888888 78889999874311 0113456789999999999999999999987643
Q ss_pred ch---HHHH-----H---HHHhcCccEEEEEecCCceEEEe--cCceeeecCccc---cccCCCCcchHHHHHHHHHHHc
Q 044512 155 EK---DDVV-----M---SLWHDNLKLLLVTYGAKGCGYFT--KKFKGRVPGFSV---KTIDTTGAGDAFVGSFLVSVAK 218 (230)
Q Consensus 155 ~~---~~~~-----~---~l~~~g~~~vvvt~g~~g~~~~~--~~~~~~~~~~~~---~~~dt~GaGDaf~ag~~~~l~~ 218 (230)
+. .... . .+...+++.||||+|++|++++. ++..++++++++ +++|||||||+|+|||++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~g~~~vvvt~G~~Ga~~~~~~~~~~~~~p~~~v~~~~vvDttGAGDaF~agfl~~l~~ 280 (328)
T cd01943 201 EPSSDEEKEAVLQALLFSGILQDPGGGVVLRCGKLGCYVGSADSGPELWLPAYHTKSTKVVDPTGGGNSFLGGFAAGLAL 280 (328)
T ss_pred CccchhhhhhhHHHHHHHhhhccCCCEEEEEeCCCCCEEEecCCCceEecCCccCCCCcccCCCCchHHHHHHHHHHHHc
Confidence 21 1111 1 22457889999999999999988 456778888887 8999999999999999999999
Q ss_pred CCCccccccc
Q 044512 219 DANIFNVKFR 228 (230)
Q Consensus 219 g~~~~~a~~~ 228 (230)
|++++++.++
T Consensus 281 g~~~~~al~~ 290 (328)
T cd01943 281 TKSIDEACIY 290 (328)
T ss_pred CCCHHHHHHH
Confidence 9999988653
No 27
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=100.00 E-value=5.8e-32 Score=217.38 Aligned_cols=209 Identities=22% Similarity=0.293 Sum_probs=163.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCcccccccc------ccCccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDS------ELNMGLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~ 74 (230)
++||+|.+|+.+++.|+++||+++++ ..++.+|+++++++++ +++.+..+... ...+... +.....++++
T Consensus 60 ~~vG~D~~g~~i~~~l~~~gI~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 135 (304)
T cd01172 60 GVVGDDEAGDLLRKLLEKEGIDTDGI-VDEGRPTTTKTRVIAR-NQQLLRVDRED--DSPLSAEEEQRLIERIAERLPEA 135 (304)
T ss_pred EEEcCCccHHHHHHHHHhCCCCcceE-ecCCCCceEEEEEecC-CcEEEEEecCC--CCCCCHHHHHHHHHHHHHhhccC
Confidence 47899999999999999999999985 4566679888888765 45555443221 1222211 1113457899
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA 154 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 154 (230)
+++|++++ .....+.+.+..+++.+++.+.++++|++.+. ...++++|++++|++|++.+++....
T Consensus 136 ~~v~~s~~-~~~~~~~~~~~~~~~~a~~~~~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~ 201 (304)
T cd01172 136 DVVILSDY-GKGVLTPRVIEALIAAARELGIPVLVDPKGRD-------------YSKYRGATLLTPNEKEAREALGDEIN 201 (304)
T ss_pred CEEEEEcC-CCCccCHHHHHHHHHHHHhcCCCEEEeCCCcc-------------hhhccCCcEeCCCHHHHHHHhCCCCC
Confidence 99999875 44445567888999999999999999998531 14577999999999999999987533
Q ss_pred c---hHHHHHHHH-hcCccEEEEEecCCceEEEe-cCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 155 E---KDDVVMSLW-HDNLKLLLVTYGAKGCGYFT-KKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 155 ~---~~~~~~~l~-~~g~~~vvvt~g~~g~~~~~-~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+ .+++++.++ ..|++.||||+|++|+++++ +++.+++++++++++||+||||+|+|||+++|++|+++++|-+
T Consensus 202 ~~~~~~~~~~~l~~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vvdttGAGDaf~ag~i~~l~~g~~~~~al~ 279 (304)
T cd01172 202 DDDELEAAGEKLLELLNLEALLVTLGEEGMTLFERDGEVQHIPALAKEVYDVTGAGDTVIATLALALAAGADLEEAAF 279 (304)
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEcCCCccEEEcCCCcEEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHH
Confidence 2 234556565 47899999999999999998 6788999999999999999999999999999999999998864
No 28
>PRK09954 putative kinase; Provisional
Probab=100.00 E-value=5e-32 Score=222.45 Aligned_cols=212 Identities=17% Similarity=0.155 Sum_probs=161.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC--ccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN--MGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~v~ 78 (230)
++||+|.+|+.+++.|++.||+++++...++.+|+.++++.++++++.+.. .+..+...++++.+. ...+..+++++
T Consensus 114 g~VG~D~~G~~i~~~l~~~GVd~~~~~~~~~~~T~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 192 (362)
T PRK09954 114 SAIGDDFYGETLLEETRRAGVNVSGCIRLHGQSTSTYLAIANRQDETVLAI-NDTHILQQLTPQLLNGSRDLIRHAGVVL 192 (362)
T ss_pred EEECCCHHHHHHHHHHHHcCCCccceEEcCCCCCeEEEEEEcCCCCEEEEE-cCchhhhcCCHHHHHHHHHHHhcCCEEE
Confidence 479999999999999999999999988888878998888877665555443 333333444443333 23456788886
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc---
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE--- 155 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~--- 155 (230)
+.+. .+.+.+..+++.+ +++++++|+++.. ....+.++++++|++++|+.|++.++|....+
T Consensus 193 ~~~~-----~~~~~~~~~~~~a--~~~~v~~D~~~~~--------~~~~~~~~l~~~dil~~n~~Ea~~l~g~~~~~~~~ 257 (362)
T PRK09954 193 ADCN-----LTAEALEWVFTLA--DEIPVFVDTVSEF--------KAGKIKHWLAHIHTLKPTQPELEILWGQAITSDAD 257 (362)
T ss_pred EECC-----CCHHHHHHHHHhC--CCCcEEEECCCHH--------HhhhhhhhhccccEEecCHHHHHHHcCCCCCCHHH
Confidence 6542 2334555555443 4789999997421 12346778999999999999999999865432
Q ss_pred hHHHHHHHHhcCccEEEEEecCCceEEEecC-ceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 156 KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKK-FKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 156 ~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~-~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
..++++.+++.|++.||||+|++|++++.++ ..+++++++++++|||||||+|+|||++++++|+++++|.++
T Consensus 258 ~~~~~~~l~~~g~~~Vvvt~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Ag~l~~l~~g~~~~eal~~ 331 (362)
T PRK09954 258 RNAAVNALHQQGVQQIFVYLPDESVFCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARF 331 (362)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccEEEEeCCCceEeccCCCcccccccchHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2356778888999999999999999988754 466778888999999999999999999999999999998763
No 29
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=100.00 E-value=1.9e-31 Score=212.97 Aligned_cols=207 Identities=13% Similarity=0.169 Sum_probs=157.4
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|++|+.+++.|+++||+++++....+..++.++++++++|++++..++ .+...++.++++...+++++++|++
T Consensus 57 ~~vG~D~~g~~~~~~l~~~gId~~~~~~~~~~~~~~~~~~~~~~g~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (290)
T cd01939 57 GVLSRGPVFESLLDDFQSRGIDISHCYRKDIDEPASSYIIRSRAGGRTTIVND--NNLPEVTYDDFSKIDLTQYGWIHFE 134 (290)
T ss_pred EeecCCHHHHHHHHHHHHcCCceeeeeEcCCCCCeeEEEEEcCCCCeEEEEeC--CCCCCCCHHHHhhhhhccCCEEEEe
Confidence 57999999999999999999999998666554566667777777888777764 3344566666655556899999999
Q ss_pred cccccCchHHHHHHHHHHHHHHCC-------CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCC
Q 044512 81 SISLISEPCRSAHMAALKAAKDAG-------VLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 153 (230)
+..+ +...++++.+++.+ +++++|+... .+.+.++++++|++++|++|+..+ +...
T Consensus 135 g~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~~----------~~~~~~~l~~~di~~~n~~~~~~~-~~~~ 197 (290)
T cd01939 135 GRNP------DETLRMMQHIEEHNNRRPEIRITISVEVEKP----------REELLELAAYCDVVFVSKDWAQSR-GYKS 197 (290)
T ss_pred ccCH------HHHHHHHHHHHHhcCcCCCcceEEEEEeccC----------chhhhhHHhhCCEEEEEhHHHHhc-CcCC
Confidence 8632 34456666666655 5788888642 133558899999999999998764 5432
Q ss_pred cchHHHHHHH--HhcCccEEEEEecCCceEEEec-CceeeecCccc-cccCCCCcchHHHHHHHHHHHcCCC-ccccccc
Q 044512 154 AEKDDVVMSL--WHDNLKLLLVTYGAKGCGYFTK-KFKGRVPGFSV-KTIDTTGAGDAFVGSFLVSVAKDAN-IFNVKFR 228 (230)
Q Consensus 154 ~~~~~~~~~l--~~~g~~~vvvt~g~~g~~~~~~-~~~~~~~~~~~-~~~dt~GaGDaf~ag~~~~l~~g~~-~~~a~~~ 228 (230)
.++.++.+ ...+++.||+|+|++|++++.+ +..+++++++. +++||+||||+|+|||++++++|++ +++|.++
T Consensus 198 --~~~~~~~~~~~~~~~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vvDt~GAGDsf~agfl~~l~~g~~~~~~a~~~ 275 (290)
T cd01939 198 --PEECLRGEGPRAKKAALLVCTWGDQGAGALGPDGEYVHSPAHKPIRVVDTLGAGDTFNAAVIYALNKGPDDLSEALDF 275 (290)
T ss_pred --HHHHHHhhhhhccCCcEEEEEcccCCeEEEcCCCCEEEecCCCCCCcccCCCchHHHHHHHHHHHHcCCccHHHHHHH
Confidence 23333332 2468899999999999999886 46778888764 6999999999999999999999995 9998763
No 30
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.98 E-value=3.9e-31 Score=208.65 Aligned_cols=193 Identities=19% Similarity=0.233 Sum_probs=156.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++ ++++..+... +..|+.++++++++|++++..... .. ..++....+.+++++|++
T Consensus 57 ~~vG~D~~g~~i~~~l~~-~~~~~~~~~~-~~~t~~~~~~~~~~g~r~~~~~~~--~~----~~~~~~~~~~~~~~~~~~ 128 (265)
T cd01947 57 SNLGRDEIGIQSLEELES-GGDKHTVAWR-DKPTRKTLSFIDPNGERTITVPGE--RL----EDDLKWPILDEGDGVFIT 128 (265)
T ss_pred EEecCChHHHHHHHHHHh-cCCcceEEec-CCCCceEEEEECCCCcceEEecCC--CC----cccCCHhHhccCCEEEEe
Confidence 579999999999999999 9999987754 458999999998889988876421 11 233444567899999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
+.. ...++++.+++.+ .+++|++.+.. ...+.++++++|++++|++|+..+.+ +
T Consensus 129 ~~~--------~~~~~~~~a~~~~-~~~~d~~~~~~--------~~~~~~~~~~~d~~~~n~~e~~~l~~---------~ 182 (265)
T cd01947 129 AAA--------VDKEAIRKCRETK-LVILQVTPRVR--------VDELNQALIPLDILIGSRLDPGELVV---------A 182 (265)
T ss_pred ccc--------ccHHHHHHHHHhC-CeEeccCcccc--------chhHHHHhhhCCEEEeCHHHHHHhhh---------H
Confidence 853 1245666777664 57788875432 23567889999999999999988753 4
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.+...+++.||+|+|++|+++++++..+++++++++++|||||||+|+|||++++++|+++++|.+
T Consensus 183 ~~~~~~~~~~viit~G~~Ga~~~~~~~~~~~~~~~~~vvDttGAGDaF~ag~l~~l~~g~~~~~al~ 249 (265)
T cd01947 183 EKIAGPFPRYLIVTEGELGAILYPGGRYNHVPAKKAKVPDSTGAGDSFAAGFIYGLLKGWSIEEALE 249 (265)
T ss_pred HHHHhccCCEEEEEeCCCCeEEEECCeeEECCCCCCCCCCCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 5566789999999999999999998888899999899999999999999999999999999999865
No 31
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.98 E-value=5.1e-31 Score=211.91 Aligned_cols=207 Identities=17% Similarity=0.180 Sum_probs=162.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC------ccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN------MGLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~ 74 (230)
|+||+| +|+.+++.|++.||+++++.... .|++++++++++|+++...+ .+.. ++..++. .+.++++
T Consensus 56 s~vG~D-~g~~~~~~L~~~gId~~~~~~~~--~t~~~~~~~~~~g~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~~ 128 (304)
T TIGR03828 56 GFLGGF-TGDFIEALLREEGIKTDFVRVPG--ETRINVKIKEPSGTETKLNG--PGPE--ISEEELEALLEKLRAQLAEG 128 (304)
T ss_pred EEecCc-hhHHHHHHHHHCCCcceEEECCC--CCeeeEEEEeCCCCEEEEEC--CCCC--CCHHHHHHHHHHHHHhccCC
Confidence 579999 69999999999999999887653 57777878877787776654 2222 3332222 1257899
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh-hhCcEEeeCHHHHhhhcCCCC
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIW-NHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dil~~n~~E~~~l~~~~~ 153 (230)
+++|++++ .....+.+.+..+++.+++.+.++++|++.. .+.+.+ ..+|++++|+.|+..+++...
T Consensus 129 ~~v~~~g~-~~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~------------~~~~~~~~~~~i~~~n~~E~~~l~g~~~ 195 (304)
T TIGR03828 129 DWLVLSGS-LPPGVPPDFYAELIALAREKGAKVILDTSGE------------ALRDGLKAKPFLIKPNDEELEELFGREL 195 (304)
T ss_pred CEEEEECC-CCCCCCHHHHHHHHHHHHHcCCEEEEECChH------------HHHHHHhcCCcEECcCHHHHHHHhCCCC
Confidence 99999986 3333455778889999999999999999731 122333 468899999999999998754
Q ss_pred cch---HHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 154 AEK---DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 154 ~~~---~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.+. .++++.+++.|++.||||+|++|++++.++..+++++++++++||+||||+|+|||+++|.+|+++++|.+
T Consensus 196 ~~~~~~~~~~~~l~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaF~a~~l~~l~~g~~~~~a~~ 272 (304)
T TIGR03828 196 KTLEEIIEAARELLDLGAENVLISLGADGALLVTKEGALFAQPPKGEVVSTVGAGDSMVAGFLAGLESGLSLEEALR 272 (304)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCCCcEEEcCCceEEEeCCCccccCCcChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 332 34567788889999999999999999988877888888889999999999999999999999999998865
No 32
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.97 E-value=1e-30 Score=210.61 Aligned_cols=209 Identities=20% Similarity=0.225 Sum_probs=162.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCc-----ccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNM-----GLIKQAK 75 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~ 75 (230)
+++|+ .+|+.+++.|++.||+++++...+. .++..++..+++|++++..+. ++. ++.++++. ..+++++
T Consensus 59 ~~vG~-~~g~~i~~~l~~~gv~~~~~~~~~~-~~~~~~i~~~~~g~~~~~~~~--~~~--~~~~~~~~l~~~~~~~~~~~ 132 (309)
T PRK10294 59 FPAGG-ATGEHLVSLLADENVPVATVEAKDW-TRQNLHVHVEASGEQYRFVMP--GAA--LNEDEFRQLEEQVLEIESGA 132 (309)
T ss_pred EEecC-ccHHHHHHHHHHcCCCceEEECCCC-CeeeEEEEEcCCCcEEEEECC--CCC--CCHHHHHHHHHHHHhcCCCC
Confidence 36786 7999999999999999999987554 455555666777887766542 222 33333321 2357889
Q ss_pred EEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHH--hhhCcEEeeCHHHHhhhcCCCC
Q 044512 76 IFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSI--WNHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--l~~~dil~~n~~E~~~l~~~~~ 153 (230)
++++++. +....+.+.+.++++.+++.|.++++|++.. .+... ++++|++++|++|+..|++.+.
T Consensus 133 ~~~i~g~-~~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~------------~~~~~~~~~~~~~i~~n~~E~~~l~g~~~ 199 (309)
T PRK10294 133 ILVISGS-LPPGVKLEKLTQLISAAQKQGIRCIIDSSGD------------ALSAALAIGNIELVKPNQKELSALVNRDL 199 (309)
T ss_pred EEEEeCC-CCCCCCHHHHHHHHHHHHHcCCeEEEeCCCH------------HHHHHHhcCCCeEECCCHHHHHHHhCCCC
Confidence 9999986 4445566888999999999999999999721 12222 4689999999999999998764
Q ss_pred cch---HHHHHHHHhcC-ccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 154 AEK---DDVVMSLWHDN-LKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 154 ~~~---~~~~~~l~~~g-~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
.+. .++++.++..+ ++.||||+|++|++++.++..+++++++++++||+||||+|+|||++++++|+++++|.++
T Consensus 200 ~~~~~~~~a~~~l~~~~~~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaf~ag~l~~l~~g~~~~~al~~ 278 (309)
T PRK10294 200 TQPDDVRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMVRF 278 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCCEEEEecCCCceEEEcCCccEEEeCCCcccCCCcchHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 332 35667777766 8899999999999999888788888888999999999999999999999999999998753
No 33
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.97 E-value=4.2e-31 Score=213.42 Aligned_cols=211 Identities=22% Similarity=0.213 Sum_probs=162.2
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccc----ccc--Cccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKD----SEL--NMGLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~----~~~--~~~~l~~~ 74 (230)
|+||+|.+|+.+++.|++.||++.++....+.+|+.+++++++++ ..+... ......++. ..+ ....++++
T Consensus 68 ~~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (315)
T TIGR02198 68 GVVGDDEAGKRLEALLAEEGIDTSGLIRDKDRPTTTKTRVLARNQ-QLLRVD--FEERDPINAELEARLLAAIREQLASA 144 (315)
T ss_pred EEEecchhHHHHHHHHHHCCCCcceEEECCCCCcceEEEEEcCCe-EEEEec--CCCCCCCCHHHHHHHHHHHHhhhhhC
Confidence 579999999999999999999999988877778999988887633 222222 111111221 111 12457899
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCC-
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGD- 153 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~- 153 (230)
+++|+++.. ....+.+.+..+++.+++.+.++++||+++. ...++++|++++|++|++.+++...
T Consensus 145 ~~v~~~~~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~~-------------~~~~~~~d~l~~n~~E~~~l~~~~~~ 210 (315)
T TIGR02198 145 DAVVLSDYA-KGVLTPRVVQEVIAAARKHGKPVLVDPKGKD-------------FSRYRGATLITPNRKEAEAAVGACDT 210 (315)
T ss_pred CEEEEecCC-CCccCHHHHHHHHHHHHhcCCCEEEeCCCcc-------------hhhcCCCcEECCCHHHHHHHhCCCCC
Confidence 999998863 3445667888999999999999999998431 1246789999999999999998422
Q ss_pred -cchHHHHHHHH-hcCccEEEEEecCCceEEEec-CceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 154 -AEKDDVVMSLW-HDNLKLLLVTYGAKGCGYFTK-KFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 154 -~~~~~~~~~l~-~~g~~~vvvt~g~~g~~~~~~-~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
.+..++++.+. ..|++.||||+|++|++++.+ +..+++++++++++||+||||+|+|||++++++|+++++|.++
T Consensus 211 ~~~~~~~~~~l~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~~~~vvdt~GAGDaf~ag~~~~l~~g~~~~~al~~ 288 (315)
T TIGR02198 211 EAELVQAAEKLLEELDLEALLVTRSEKGMTLFTREGEPIHIPAQAREVYDVTGAGDTVIATLALALAAGASLEEACRL 288 (315)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCCCCeEEEecCCCeEEecCCCCCCCCCcCccHHHHHHHHHHHHcCCCHHHHHHH
Confidence 12234555554 478999999999999999884 5778889888899999999999999999999999999988653
No 34
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.97 E-value=7.3e-31 Score=211.41 Aligned_cols=211 Identities=11% Similarity=0.137 Sum_probs=160.4
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccc--c--ccCccccccccE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKD--S--ELNMGLIKQAKI 76 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~~~ 76 (230)
+++|+| +|+++++.|++.||+++++.... .|+.+++++ ++|++++..... .+..... . +.....++++++
T Consensus 56 ~~vG~~-~G~~i~~~l~~~GV~~~~~~~~~--~t~~~~~~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 129 (309)
T TIGR01231 56 GFLGGK-LGEFIEKELDHSDIKHAFYKISG--ETRNCIAIL-HEGQQTEILEQG--PEISNQEAAGFLKHFEQLLEKVEV 129 (309)
T ss_pred EEecCh-hHHHHHHHHHHcCCceeEEECCC--CCEEeEEEE-eCCCEEEEeCCC--CCCCHHHHHHHHHHHHHHhccCCE
Confidence 368964 99999999999999999887543 466666655 468887776532 2211110 0 111245788999
Q ss_pred EEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc-c
Q 044512 77 FHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA-E 155 (230)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~-~ 155 (230)
+|+++.. ....+...+.++++.+++.|.++++|++++ ....+.+.+.++|++++|++|+..++|.... +
T Consensus 130 v~~~g~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~~~~~~~~~dil~~n~~E~~~l~g~~~~~~ 199 (309)
T TIGR01231 130 VAISGSL-PKGLPQDYYAQIIERCQNKGVPVVLDCSGA---------TLQTVLENPAKPTVIKPNIEELSQLLNQELTED 199 (309)
T ss_pred EEEECCC-CCCcCHHHHHHHHHHHHhCCCeEEEECChH---------HHHHHHhccCCCeEEcCCHHHHHHHhCCCCCCC
Confidence 9999963 344456788899999999999999999742 1123344457899999999999999986432 2
Q ss_pred hH---HHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 156 KD---DVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 156 ~~---~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.+ +.++.+...|++.|++|+|++|++++.++..+++++++++++||+||||+|+|||++++++|++++++.+
T Consensus 200 ~~~~~~~~~~~~~~g~~~vivT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~agfl~~l~~g~~~~~a~~ 274 (309)
T TIGR01231 200 LESLKQALSQPLFSGIEWIIVSLGAQGAFAKHGHTFYKVNIPTISVVNPVGSGDSTVAGITSALLNHESDHDLLK 274 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccCCCceEEEeCCeeEEeeCCccCcCCCcchHHHHHHHHHHHHHcCCCHHHHHH
Confidence 22 3445556689999999999999999988878888998999999999999999999999999999998765
No 35
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.97 E-value=1.4e-30 Score=209.77 Aligned_cols=209 Identities=14% Similarity=0.161 Sum_probs=159.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC------ccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN------MGLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~ 74 (230)
+.||+ .+|+.+++.|++ ||+++++.. .+ .|+.++++++ +|++++..++ ++. +..++.. ...++++
T Consensus 57 ~~vGd-~~G~~i~~~l~~-gI~~~~~~~-~~-~t~~~~~~~~-~g~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~ 127 (309)
T PRK13508 57 GLIGG-ELGQFIAEHLDD-QIKHAFYKI-KG-ETRNCIAILH-EGQQTEILEK--GPE--ISVQEADGFLHHFKQLLESV 127 (309)
T ss_pred EEecC-hhHHHHHHHHHc-CCCceEEEC-CC-CCeeeEEEEe-CCCEEEEECC--CCC--CCHHHHHHHHHHHHHhccCC
Confidence 36895 689999999999 999997654 33 5777777765 6788777653 222 2221111 2357899
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA 154 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 154 (230)
+++|+++.. ....+.+.+..+++.+++.|.++++|++.. ..+.+...+.++|++++|++|+..++|.+..
T Consensus 128 ~~v~~~g~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~---------~~~~~~~~~~~~dii~~n~~E~~~l~g~~~~ 197 (309)
T PRK13508 128 EVVAISGSL-PAGLPVDYYAQLIELANQAGKPVVLDCSGA---------ALQAVLESPYKPTVIKPNIEELSQLLGKEVS 197 (309)
T ss_pred CEEEEeCCC-CCCcCHHHHHHHHHHHHHCCCEEEEECCcH---------HHHHHHhccCCceEEccCHHHHHHHhCCCCC
Confidence 999999863 333445677888899999999999999731 1122333456899999999999999987532
Q ss_pred -ch---HHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 155 -EK---DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 155 -~~---~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
+. .+.++.+...|++.||+|+|++|++++.++..+++++++++++||+||||+|+|||++++++|+++++|.++
T Consensus 198 ~~~~~~~~~~~~~~~~g~~~vvvT~G~~G~~~~~~~~~~~~~~~~v~vvDttGAGDaF~Agfi~~l~~g~~~~~al~~ 275 (309)
T PRK13508 198 EDLDELKEVLQQPLFEGIEWIIVSLGADGAFAKHNDTFYKVDIPKIEVVNPVGSGDSTVAGIASGLLHQEDDADLLKK 275 (309)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCceEEEeCCceEEEeCCCccccCCcChhHHHHHHHHHHHHcCCCHHHHHHH
Confidence 22 233445556799999999999999999888888899999999999999999999999999999999998753
No 36
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.97 E-value=1.8e-30 Score=207.28 Aligned_cols=207 Identities=19% Similarity=0.191 Sum_probs=161.7
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC------ccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN------MGLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~ 74 (230)
|+||+| +|+.+++.|++.||+++++.... .|++.+++++.+|+++.+.+. .. .++.++++ .+.++++
T Consensus 57 s~vG~D-~g~~i~~~l~~~gi~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~ 129 (289)
T cd01164 57 GFLGGF-TGDFFEALLKEEGIPDDFVEVAG--ETRINVKIKEEDGTETEINEP--GP--EISEEELEALLEKLKALLKKG 129 (289)
T ss_pred EEccCc-hhHHHHHHHHHcCCCceEEECCC--CCEEEEEEEeCCCCEEEEeCC--CC--CCCHHHHHHHHHHHHHhcCCC
Confidence 579999 89999999999999999887643 467777777766666655432 22 23333322 1345789
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh-hhCcEEeeCHHHHhhhcCCCC
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIW-NHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dil~~n~~E~~~l~~~~~ 153 (230)
+++|+++.. ....+.+....+++.+++.+.++++|++.+ .+.+.+ +++|++++|++|+..+++...
T Consensus 130 ~~~~i~g~~-~~~~~~~~~~~~~~~~~~~~~~i~~D~~~~------------~~~~~~~~~~dil~~n~~E~~~l~~~~~ 196 (289)
T cd01164 130 DIVVLSGSL-PPGVPADFYAELVRLAREKGARVILDTSGE------------ALLAALAAKPFLIKPNREELEELFGRPL 196 (289)
T ss_pred CEEEEeCCC-CCCcCHHHHHHHHHHHHHcCCeEEEECChH------------HHHHHHhcCCcEECCCHHHHHHHhCCCC
Confidence 999998853 323344677888888888999999999731 123334 699999999999999998654
Q ss_pred cc---hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 154 AE---KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 154 ~~---~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.+ ..++++.+++.+++.|++|+|++|++++.++..+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 197 ~~~~~~~~~~~~l~~~g~~~vivt~G~~G~~~~~~~~~~~~~~~~~~vvDttGAGDaf~a~~i~~l~~g~~~~~a~~ 273 (289)
T cd01164 197 GDEEDVIAAARKLIERGAENVLVSLGADGALLVTKDGVYRASPPKVKVVSTVGAGDSMVAGFVAGLAQGLSLEEALR 273 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCEEEcCCcEEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 32 335667788899999999999999999988888889988899999999999999999999999999999865
No 37
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.97 E-value=7.1e-31 Score=209.53 Aligned_cols=212 Identities=20% Similarity=0.216 Sum_probs=164.1
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCcccccccccc--CccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSEL--NMGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~v~ 78 (230)
|+||+|.+|+.+++.|++.||+++++. ..+.+|+.++++++++|++++... .......+..+.. ....+.++++++
T Consensus 56 ~~lG~D~~g~~i~~~L~~~gI~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~v~ 133 (288)
T cd01941 56 SAVGDDSEGESILEESEKAGLNVRGIV-FEGRSTASYTAILDKDGDLVVALA-DMDIYELLTPDFLRKIREALKEAKPIV 133 (288)
T ss_pred EEEecCccHHHHHHHHHHcCCccceee-eCCCCcceEEEEECCCCCEEEEEe-chHhhhhCCHHHHHHHHHHHhcCCEEE
Confidence 478999999999999999999999887 566789999999988888886432 1222222332211 134578899997
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc---
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE--- 155 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~--- 155 (230)
+++. .+.+.+..+++.+++.+.++++||+.... . ..+.++++++|++++|++|+..+++....+
T Consensus 134 ~~~~-----~~~~~~~~~~~~a~~~~~~v~~d~~~~~~-------~-~~~~~~~~~~dii~~n~~E~~~~~~~~~~~~~~ 200 (288)
T cd01941 134 VDAN-----LPEEALEYLLALAAKHGVPVAFEPTSAPK-------L-KKLFYLLHAIDLLTPNRAELEALAGALIENNED 200 (288)
T ss_pred EeCC-----CCHHHHHHHHHhhhhcCCcEEEEccchHH-------h-ccchhhcccceEEeCCHHHHHHHhCcccCCchh
Confidence 7652 24456778888888889999999874211 1 111258899999999999999999876432
Q ss_pred hHHHHHHHHhcCccEEEEEecCCceEEEec---CceeeecC-ccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 156 KDDVVMSLWHDNLKLLLVTYGAKGCGYFTK---KFKGRVPG-FSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 156 ~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~---~~~~~~~~-~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
...+++.+...+++.||+|+|++|++++++ +..+++++ ++++++||+||||+|+|||++++++|+++++|.+
T Consensus 201 ~~~~~~~~~~~~~~~vvit~G~~Ga~~~~~~~~~~~~~~~~~~~~~~vDttGAGDaf~a~~~~~l~~g~~~~~al~ 276 (288)
T cd01941 201 ENKAAKILLLPGIKNVIVTLGAKGVLLSSREGGVETKLFPAPQPETVVNVTGAGDAFVAGLVAGLLEGMSLDDSLR 276 (288)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCcEEEEecCCCceeEEecCCCCccceeCCCcHHHHHHHHHHHHHcCCCHHHHHH
Confidence 223456677789999999999999999987 56678888 5789999999999999999999999999998865
No 38
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.97 E-value=2e-30 Score=208.43 Aligned_cols=208 Identities=19% Similarity=0.195 Sum_probs=162.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCc------cccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNM------GLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~ 74 (230)
|+||+| +|+.+++.|++.||+++++... + .|+.++++++++|+++.+.+ .+. .++..++.. +.++++
T Consensus 56 ~~vG~D-~g~~i~~~l~~~gI~~~~i~~~-~-~t~~~~~~~~~~g~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~ 128 (303)
T TIGR03168 56 GFLGGF-TGEFIEALLAEEGIKNDFVEVK-G-ETRINVKIKESSGEETELNE--PGP--EISEEELEQLLEKLRELLASG 128 (303)
T ss_pred EEeCCc-hhHHHHHHHHHcCCCceEEECC-C-CCEEeEEEEeCCCCEEEEeC--cCC--CCCHHHHHHHHHHHHHhccCC
Confidence 468999 7999999999999999988764 3 56677777777777765544 222 233333321 347899
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA 154 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 154 (230)
+++|+++. .....+.+.+..+++.+++.|.++++|++.. .....+..++|++++|+.|+..+++....
T Consensus 129 ~~v~i~~~-~~~~~~~~~~~~~~~~~~~~g~~v~~D~~~~-----------~~~~~~~~~~dil~~n~~E~~~l~g~~~~ 196 (303)
T TIGR03168 129 DIVVISGS-LPPGVPPDFYAQLIAIARKRGAKVILDTSGE-----------ALREALAAKPFLIKPNHEELEELFGRELK 196 (303)
T ss_pred CEEEEeCC-CCCCCCHHHHHHHHHHHHHCCCEEEEECCcH-----------HHHHHHhcCCcEECCCHHHHHHHhCCCCC
Confidence 99999885 3333456778889999999999999999731 11123335899999999999999987543
Q ss_pred c---hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 155 E---KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 155 ~---~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+ ..++++.+...+++.||||+|++|+++++++..+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 197 ~~~~~~~~~~~l~~~g~~~vviT~g~~G~~~~~~~~~~~~~~~~~~~vDttGAGD~F~a~~~~~l~~g~~i~~a~~ 272 (303)
T TIGR03168 197 TEEEIIEAARELLDRGAENVLVSLGADGALLVTKEGALKATPPKVEVVNTVGAGDSMVAGFLAGLARGLSLEEALR 272 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeecCCCcEEEeCCceEEeeCCcceeecCcCHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3 234567777889999999999999999998888889988889999999999999999999999999998865
No 39
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.97 E-value=1.5e-30 Score=204.75 Aligned_cols=201 Identities=21% Similarity=0.204 Sum_probs=156.2
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
++||+|.+|+.+++.|++.||+++++...++ +|+.+++.++ +++|++..+.. +....+..++...+.+.+++++|++
T Consensus 44 s~vG~D~~g~~i~~~l~~~gI~~~~~~~~~~-~t~~~~~~~~-~~~r~~~~~~~-~~~~~~~~~~~~~~~l~~~~~v~~~ 120 (260)
T PRK09813 44 TWVGDDDYGTKLKQDLARMGVDISHVHTKHG-VTAQTQVELH-DNDRVFGDYTE-GVMADFALSEEDYAWLAQYDIVHAA 120 (260)
T ss_pred EEecCcHHHHHHHHHHHHcCCcchheeeecC-CCceEEEEEe-CCcEEeeccCC-CcccccccCHHHHHHHHhCCEEEEe
Confidence 4799999999999999999999999987655 7888888775 57787765432 2222222222233457889999886
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
.+. ...++++.+++.+.++++|++++.. ...+.++++++|++++|..+.. .+..+++
T Consensus 121 ~~~--------~~~~~~~~~~~~~~~v~~D~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~-------~~~~~~~ 177 (260)
T PRK09813 121 IWG--------HAEDAFPQLHAAGKLTAFDFSDKWD--------SPLWQTLVPHLDYAFASAPQED-------EFLRLKM 177 (260)
T ss_pred ccc--------hHHHHHHHHHHcCCeEEEEcCCCcc--------HHHHHHhCCceeEEEecCCcch-------HHHHHHH
Confidence 431 1246677788899999999986421 2345678899999998865311 1234567
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.+.+.|++.||||+|++|++++.+++.+++|+.+++++||+||||+|+|||++++.+|++++++.+
T Consensus 178 ~~~~~~g~~~viit~G~~Ga~~~~~~~~~~~~~~~~~~vDttGAGDaF~ag~i~~~~~g~~~~~al~ 244 (260)
T PRK09813 178 KAIVARGAGVVIVTLGENGSIAWDGAQFWRQAPEPVTVVDTMGAGDSFIAGFLCGWLAGMTLPQAMA 244 (260)
T ss_pred HHHHHcCCCEEEEEECCCceEEEECCEEEecCCcccCCCCCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 7788899999999999999999998888899998999999999999999999999999999998864
No 40
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.97 E-value=4.9e-30 Score=206.83 Aligned_cols=208 Identities=12% Similarity=0.131 Sum_probs=162.5
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC------ccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN------MGLIKQA 74 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~ 74 (230)
++||+|.+|+. ++.|+++||++.++. ..+ +|++++++++++|+++...+. +. .++..+.. ...++++
T Consensus 60 ~~vG~D~~~~~-~~~l~~~gv~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~l~~~ 132 (312)
T PRK09513 60 GFLGKDNQDGF-QQLFSELGIANRFQV-VQG-RTRINVKLTEKDGEVTDFNFS--GF--EVTPADWERFVTDSLSWLGQF 132 (312)
T ss_pred EEecCccHHHH-HHHHHHcCCCccEEE-CCC-CCEEEEEEEeCCCcEEEEeCC--CC--CCCHHHHHHHHHHHHhhcCCC
Confidence 46999999997 689999999988764 444 788888888777887755542 21 22222211 2457899
Q ss_pred cEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCc
Q 044512 75 KIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDA 154 (230)
Q Consensus 75 ~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~ 154 (230)
+++|++|.. ..+...+.+.++++.+++.|.++++|++.. .....+....+++++|++|+..++|....
T Consensus 133 d~v~~~g~~-~~~~~~~~~~~~~~~a~~~g~~v~~D~~~~-----------~~~~~~~~~~~~l~~n~~E~~~l~g~~~~ 200 (312)
T PRK09513 133 DMVAVSGSL-PRGVSPEAFTDWMTRLRSQCPCIIFDSSRE-----------ALVAGLKAAPWLVKPNRRELEIWAGRKLP 200 (312)
T ss_pred CEEEEECCC-CCCCCHHHHHHHHHHHHhcCCEEEEECChH-----------HHHHHhccCCeEEcCCHHHHHHHhCCCCC
Confidence 999999964 444456788889999999999999999731 11223345789999999999999997654
Q ss_pred chH---HHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 155 EKD---DVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 155 ~~~---~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.+ ++++.+.+.|++.||+|+|++|++++.++..+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 201 ~~~~~~~~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~vDttGAGDaf~ag~i~~l~~g~~~~~a~~ 276 (312)
T PRK09513 201 ELKDVIEAAHALREQGIAHVVISLGAEGALWVNASGEWIAKPPACDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR 276 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCCcEEEeCCceEEecCCCccccCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 333 3567788889999999999999999888777788888889999999999999999999999999999865
No 41
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.6e-29 Score=195.92 Aligned_cols=206 Identities=20% Similarity=0.249 Sum_probs=170.4
Q ss_pred CCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEec-CCeeeEEEecCCCccccccccccC------cccccccc
Q 044512 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKK-NGEREFMFYRNPSADMLLKDSELN------MGLIKQAK 75 (230)
Q Consensus 3 vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~-~g~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~ 75 (230)
+|.+ .|+.+.+.|++.||...++.+... |..++-+.+. ++..+-+.. ++ ..++.+++. ...+++.|
T Consensus 59 lGg~-tg~~~~~~l~~~gi~~~fv~v~g~--TRinvki~~~~~~~~Tein~--~G--p~is~~~~~~~l~~~~~~l~~~d 131 (310)
T COG1105 59 LGGF-TGEFFVALLKDEGIPDAFVEVKGD--TRINVKILDEEDGEETEINF--PG--PEISEAELEQFLEQLKALLESDD 131 (310)
T ss_pred cCCc-cHHHHHHHHHhcCCCceEEEccCC--CeeeEEEEecCCCcEEEecC--CC--CCCCHHHHHHHHHHHHHhcccCC
Confidence 4555 899999999999999999987655 5555555555 444554443 33 234444443 23478899
Q ss_pred EEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHHHhhhcCCCCc
Q 044512 76 IFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HADLIKVSDDEVNFLTKGGDA 154 (230)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~~~l~~~~~~ 154 (230)
++.++| +++...+.+.+.++++.+++.|.++++|.+ .+.+.+.++ .+++++||.+|++.++|.+..
T Consensus 132 ~VvlsG-SlP~g~~~d~y~~li~~~~~~g~~vilD~S------------g~~L~~~L~~~P~lIKPN~~EL~~~~g~~~~ 198 (310)
T COG1105 132 IVVLSG-SLPPGVPPDAYAELIRILRQQGAKVILDTS------------GEALLAALEAKPWLIKPNREELEALFGRELT 198 (310)
T ss_pred EEEEeC-CCCCCCCHHHHHHHHHHHHhcCCeEEEECC------------hHHHHHHHccCCcEEecCHHHHHHHhCCCCC
Confidence 999999 788899999999999999999999999998 355666664 699999999999999999987
Q ss_pred ch---HHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 155 EK---DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 155 ~~---~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
+. .++++.++..|+++|||++|.+|+++++++..|++.+|++++++|+||||+++|||+++++++++++++.++
T Consensus 199 ~~~d~i~~a~~l~~~g~~~ViVSlG~~Gal~~~~~~~~~a~~p~~~vvstVGAGDs~VAGf~~~~~~~~~~e~~l~~ 275 (310)
T COG1105 199 TLEDVIKAARELLAEGIENVIVSLGADGALLVTAEGVYFASPPKVQVVSTVGAGDSMVAGFLAGLLKGKSLEEALRF 275 (310)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEEecCcccEEEccCCeEEEeCCCcceecCcCchHHHHHHHHHHHHcCCCHHHHHHH
Confidence 54 345667889999999999999999999999999999999999999999999999999999999999998654
No 42
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=3e-28 Score=187.90 Aligned_cols=214 Identities=19% Similarity=0.284 Sum_probs=166.2
Q ss_pred CCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC----ccccccccEE
Q 044512 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN----MGLIKQAKIF 77 (230)
Q Consensus 2 ~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~v 77 (230)
+||.|++|+.+.+.+++.||++.+.. .++.+||++.++++.++ |++..+ .++...++.++++ +..++++.++
T Consensus 88 svG~Dk~ge~l~~~~~~aGv~~~yq~-~~d~~TGtCavli~~~n-RSL~an--LgAAn~f~~dhl~~~~~~~lveka~v~ 163 (343)
T KOG2854|consen 88 SVGKDKFGELLKSKARAAGVNVHYQV-KEDGPTGTCAVLITGDN-RSLCAN--LGAANCFKVDHLDKEENWALVEKAKVF 163 (343)
T ss_pred eccCchHHHHHHHHHHhcCceEEEEe-ccCCCCceEEEEEeCCC-cchhhc--cchhhccCHHHhcchhhhhhhhheeEE
Confidence 69999999999999999999999765 55679999999998766 776665 4555555555553 4588999999
Q ss_pred EEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCC---Cc
Q 044512 78 HYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGG---DA 154 (230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~---~~ 154 (230)
|++|+.+. .++++++.+.+.+.+.+.+.+++.+-. +. ...+.+.+..+++++|+++.|++|++.++... ..
T Consensus 164 yv~Gfflt--v~p~ai~~v~qh~~e~~r~~~lnlsap--fI--~q~~~~~l~~v~~y~DiifgNe~EA~af~~~~~~~t~ 237 (343)
T KOG2854|consen 164 YVAGFFLT--VSPDAIRKVAQHAAENNRVFTLNLSAP--FI--SQFFKDALDKVLPYADIIFGNEDEAAAFARAHGWETK 237 (343)
T ss_pred EEEEEEEE--eChHHHHHHHHHHHHhcchhheeccch--hH--HHHHHHHHHhhcCcceEEEcCHHHHHHHHHhhCCccc
Confidence 99998653 345788888888888777677776522 11 35568888999999999999999999997533 22
Q ss_pred chHHHHHH------HHhcCccEEEEEecCCceEEEecCceeeecCccc---cccCCCCcchHHHHHHHHHHHcCCCcccc
Q 044512 155 EKDDVVMS------LWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSV---KTIDTTGAGDAFVGSFLVSVAKDANIFNV 225 (230)
Q Consensus 155 ~~~~~~~~------l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~---~~~dt~GaGDaf~ag~~~~l~~g~~~~~a 225 (230)
...+..-. ......+.++||.|+++++...+++.+.++..+. +++||+||||+|++||++++.+|.++++.
T Consensus 238 dv~eia~~~~~~~k~~~~~~r~vvit~g~~~~i~~~~~~v~~~~v~~~~~~~ivDtnGAGDaFvgGFl~~l~qg~~l~~c 317 (343)
T KOG2854|consen 238 DVKEIALKLSALPKVNGTRPRTVVITQGPDPVIVAEDGKVTAYPVLPLPVEEIVDTNGAGDAFVGGFLSQLVQGKSLEEC 317 (343)
T ss_pred chHHHhhHhhccccccccccceEEEccCCCceEEecCCceEEeccccccceeeeeCCCchHHHHHHHHHHHHcCCCHHHH
Confidence 22222211 1123467899999999999999887777776543 69999999999999999999999998864
No 43
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=202.60 Aligned_cols=208 Identities=18% Similarity=0.123 Sum_probs=155.6
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC---ccccccccEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN---MGLIKQAKIF 77 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~v 77 (230)
++||+|.+|+.+++.|++.||+++++.. .+.+|+.++++++.++.... ... .........+.+. ...+++++++
T Consensus 71 ~~vG~D~~g~~i~~~L~~~gI~~~~v~~-~~~~T~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~~l~~~~~v 147 (473)
T PRK11316 71 GLTGIDEAARALSKLLAAVGVKCDFVSV-PTHPTITKLRVLSRNQQLIR-LDF-EEGFEGVDPQPLLERIEQALPSIGAL 147 (473)
T ss_pred EEEcCCHHHHHHHHHHHHcCCceeEEEc-CCCCCCeeEEEEeCCceEEe-ccc-ccCCCchhHHHHHHHHHHHhccCCEE
Confidence 4799999999999999999999998875 56679988888865443222 211 1111122222211 2457899999
Q ss_pred EEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc--
Q 044512 78 HYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE-- 155 (230)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~-- 155 (230)
+++++.. + ..+.+..+++.+++.+.++++||+... ...++++|++++|..|++.++|.....
T Consensus 148 ~is~~~~--~-~~~~~~~~~~~~k~~g~~vv~Dp~~~~-------------~~~~~~~dil~pN~~Ea~~l~g~~~~~~~ 211 (473)
T PRK11316 148 VLSDYAK--G-ALASVQAMIQLARKAGVPVLIDPKGTD-------------FERYRGATLLTPNLSEFEAVVGKCKDEAE 211 (473)
T ss_pred EEecCCc--c-chhHHHHHHHHHHhcCCeEEEeCCCCC-------------ccccCCCeEECcCHHHHHHHhCCCCCHHH
Confidence 9987532 1 125677888889999999999997431 123568999999999999999853221
Q ss_pred hHHHHHH-HHhcCccEEEEEecCCceEEEecCc-eeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 156 KDDVVMS-LWHDNLKLLLVTYGAKGCGYFTKKF-KGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 156 ~~~~~~~-l~~~g~~~vvvt~g~~g~~~~~~~~-~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
..+.++. +...|++.|+||+|++|+++++++. .+++++++++++||+||||+|+|||++++++|+++++|.+
T Consensus 212 ~~~~~~~l~~~~g~~~vvVT~G~~G~~~~~~~~~~~~~~~~~v~vvDttGAGDaF~aa~~~~l~~g~~~~~al~ 285 (473)
T PRK11316 212 LVEKGMKLIADYDLSALLVTRSEQGMTLLQPGKAPLHLPTQAREVYDVTGAGDTVISVLAAALAAGNSLEEACA 285 (473)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCCCcEEEecCCceEEecCcCCCCCCCCCCcHHHHHHHHHHHHcCCCHHHHHH
Confidence 1223444 4468999999999999998888765 5788988899999999999999999999999999998865
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=2.1e-27 Score=188.48 Aligned_cols=202 Identities=21% Similarity=0.270 Sum_probs=146.9
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEe--cCCeeeEEEecCCCccccccccccCccccccccEEE
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLK--KNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFH 78 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 78 (230)
++||+| +|+.+++.|+++||+++++.+.++.+|........ .+++.+.... ......+.+ .+ ...+++++++|
T Consensus 45 ~~vG~D-~g~~~~~~l~~~gi~~~~v~~~~~~~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~~~~~~~~v~ 119 (277)
T cd01946 45 GVVGED-FPEEDYKLLNSHNIVTLGLLSKEDGKTFHWAGRYHYDLNEADTLDTD--LNVFADFDP-QL-PEHYKDSEFVF 119 (277)
T ss_pred EeccCc-ChHHHHHHHHhccCcceeEEEecCCCeEEEeeEehhhcccccchhhh--hhHHhhcCC-CC-hHHhhcCCEEE
Confidence 479999 89999999999999999998876555522110000 0111111110 011111111 11 24568899999
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHH
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDD 158 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~ 158 (230)
++++ +.+...++++.+++. .++++|+.. +|. ....+.+.++++++|++++|+.|+..+++.. +..+
T Consensus 120 ~~~~------~~~~~~~~~~~~~~~-~~v~~D~~~---~~~--~~~~~~~~~~l~~~d~~~~n~~E~~~l~g~~--~~~~ 185 (277)
T cd01946 120 LGNI------APELQREVLEQVKDP-KLVVMDTMN---FWI--SIKPEKLKKVLAKVDVVIINDGEARQLTGAA--NLVK 185 (277)
T ss_pred ECCC------CHHHHHHHHHHHHhC-CEEEEccHH---Hhh--hhhHHHHHHHhccCCEEeCCHHHHHHHhCCc--hHHH
Confidence 9875 235667778878776 789999842 342 1235667889999999999999999998854 3345
Q ss_pred HHHHHHhcCccEEEEEecCCceEEEecCceeeecCcccc-ccCCCCcchHHHHHHHHHHHcCCC
Q 044512 159 VVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVK-TIDTTGAGDAFVGSFLVSVAKDAN 221 (230)
Q Consensus 159 ~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~-~~dt~GaGDaf~ag~~~~l~~g~~ 221 (230)
+++.++..|++.||+|+|.+|+.++.+++.+++++++++ ++||+||||+|+|||++++++|++
T Consensus 186 ~~~~l~~~g~~~vvvt~G~~G~~~~~~~~~~~~~~~~~~~~vDttGAGDaF~Agfl~~l~~~~~ 249 (277)
T cd01946 186 AARLILAMGPKALIIKRGEYGALLFTDDGYFAAPAYPLESVFDPTGAGDTFAGGFIGYLASQKD 249 (277)
T ss_pred HHHHHHHcCCCEEEEecCCCcEEEEECCceEEcCCcccCccCCCCCchHHHHHHHHHHHHhCCC
Confidence 778888899999999999999999988888888888875 899999999999999999999865
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.96 E-value=2.9e-27 Score=185.45 Aligned_cols=199 Identities=19% Similarity=0.186 Sum_probs=147.2
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
|+||+|..|+ ++.|++.||++..+ ... +|+.+++.++.+|++++..+.. ........ ...+.+++++|++
T Consensus 45 ~~vG~D~~g~--~~~l~~~gv~~~~~--~~~-~t~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~ 114 (254)
T cd01937 45 TKVGRDYPDK--WSDLFDNGIEVISL--LST-ETTTFELNYTNEGRTRTLLAKC--AAIPDTES---PLSTITAEIVILG 114 (254)
T ss_pred EeeCCCchHH--HHHHHHCCcEEEEe--cCC-CeEEEEEEecCCCCeeeeeccc--cCCccccc---ccccCcccEEEEC
Confidence 5799999999 68899999997533 233 5666666666667777766532 22222111 2346789999998
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHH
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVV 160 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~ 160 (230)
++. .+....+.+. ..++++|+++....|.. ....+.++++++|++++|++|+..+ .+.++++
T Consensus 115 ~~~------~~~~~~~~~~----~~~v~~D~~~~~~~~~~---~~~~~~~~l~~~di~~~n~~E~~~~-----~~~~~~~ 176 (254)
T cd01937 115 PVP------EEISPSLFRK----FAFISLDAQGFLRRANQ---EKLIKCVILKLHDVLKLSRVEAEVI-----STPTELA 176 (254)
T ss_pred CCc------chhcHHHHhh----hhheeEccccceeeccc---cchHHHhhcccCcEEEEcHHHHhhc-----CCHHHHH
Confidence 751 2233333322 26899999854222221 1223678999999999999999873 2345677
Q ss_pred HHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 161 MSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 161 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.+...|++.||+|+|++|+++++++..+++++++++++||+||||+|+|||++++.+|+++++|.+
T Consensus 177 ~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~a~~~~~l~~g~~~~~a~~ 243 (254)
T cd01937 177 RLIKETGVKEIIVTDGEEGGYIFDGNGKYTIPASKKDVVDPTGAGDVFLAAFLYSRLSGKDIKEAAE 243 (254)
T ss_pred HHHHHcCCCEEEEeeCCcceEEEECCccEEccccCceeccCCCchHHHHHHHHHHHHcCCCHHHHHH
Confidence 8888899999999999999999998888888988889999999999999999999999999998864
No 46
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.94 E-value=1e-25 Score=181.83 Aligned_cols=195 Identities=19% Similarity=0.279 Sum_probs=147.3
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEec-----CCeeeEEEecCCCccccccccccCcccccccc
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKK-----NGEREFMFYRNPSADMLLKDSELNMGLIKQAK 75 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (230)
|+||+|.. .+++...+.. ++.+|+.+++++++ +|++++... .+++..+++.+++...+..++
T Consensus 58 s~VG~D~~----------~~v~~~~~~~-~~~~T~~~~~~~~~g~~~~~~e~~i~~~--~ga~~~l~~~di~~~~~~~~~ 124 (335)
T PLN02630 58 SKVGPDFL----------YQVSHPPIVI-PDSKTTEFHADFDQGIDGNGHEDRVLKR--VCACDPIEPSDIPDMRYEFGM 124 (335)
T ss_pred EEecCCcc----------ccccccceec-CCCCceEEEEEEcCCcccCCCCeEEEEe--ccccCCCChHHCCHHHhcccc
Confidence 57898852 3777655543 56689998888766 456666654 577778888877654566667
Q ss_pred EEEEccccccCchHHHHHHHHHHHHHH-----CCCeEEEeCCCC-CCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhc
Q 044512 76 IFHYGSISLISEPCRSAHMAALKAAKD-----AGVLLSYDPNVR-LPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLT 149 (230)
Q Consensus 76 ~v~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~-~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 149 (230)
.+++. ++++.+....+++.++. ++..+++||++. .+.|... ...+.++++++|++++|++|+..+
T Consensus 125 ~~~l~-----~ei~~e~~~~~~~~a~~v~~D~~g~~~~~Dp~~~~~~~~~~~---~~~~~~~L~~iDil~~ne~Ea~~l- 195 (335)
T PLN02630 125 AVGVA-----GEILPETLERMVEICDVVVVDIQALIRVFDPVDGTVKLVKLE---ETGFYDMLPRIGFLKASSEEALFI- 195 (335)
T ss_pred eeeec-----CCCcHHHHHHHHHHhhhheeccCceEEecCCcccccccchhh---HHHHHHHHHhCCEEEecHHHHhhc-
Confidence 66443 34456778888888887 788999999863 4444211 134678999999999999999876
Q ss_pred CCCCcchHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 150 KGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 150 ~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
+.+++. . ...||||+|++|++++.++..+++++++++++|||||||+|+|||++++++|+++++|+++
T Consensus 196 -----~~~~~~----~--~~~vvvt~G~~G~~~~~~~~~~~~~~~~v~~vDttGAGDaF~agfi~~l~~g~~~~~a~~~ 263 (335)
T PLN02630 196 -----DVEEVR----Q--KCCVIVTNGKKGCRIYWKDGEMRVPPFPAIQVDPTGAGDSFLGGFVAGLVQGLAVPDAALL 263 (335)
T ss_pred -----CHHHHc----c--CCEEEEEECCCceEEEECCeeEEeCCCCCCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 122221 1 2389999999999999988888999999999999999999999999999999999998764
No 47
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=99.90 E-value=5.2e-22 Score=149.67 Aligned_cols=135 Identities=30% Similarity=0.406 Sum_probs=112.4
Q ss_pred ccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCC
Q 044512 74 AKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 74 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 153 (230)
++++|+++.... .+.+.++++.+++.+.++++|++.....+. ...+.++++++|++++|.+|++.+++...
T Consensus 58 ~~~v~i~~~~~~----~~~~~~~~~~~~~~~~~v~~D~~~~~~~~~-----~~~~~~~~~~~dvl~~n~~E~~~l~~~~~ 128 (196)
T cd00287 58 ADAVVISGLSPA----PEAVLDALEEARRRGVPVVLDPGPRAVRLD-----GEELEKLLPGVDILTPNEEEAEALTGRRD 128 (196)
T ss_pred ccEEEEecccCc----HHHHHHHHHHHHHcCCeEEEeCCccccccc-----cchHHHHHhhCCEECCCHHHHHHHhCCCC
Confidence 899999886322 357788888999999999999997655443 12267788999999999999999998765
Q ss_pred cch---HHHHHHHHhcCccEEEEEecCCceEEEe-cCceeeecCccccccCCCCcchHHHHHHHHHHH
Q 044512 154 AEK---DDVVMSLWHDNLKLLLVTYGAKGCGYFT-KKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVA 217 (230)
Q Consensus 154 ~~~---~~~~~~l~~~g~~~vvvt~g~~g~~~~~-~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~ 217 (230)
.+. .++++.+.+.+++.||+|+|++|+++++ ++..+++++++.+++||+||||+|+|||++++.
T Consensus 129 ~~~~~~~~~~~~l~~~g~~~vvvt~G~~g~~~~~~~~~~~~~~~~~~~~vdt~GAGD~f~ag~~~~l~ 196 (196)
T cd00287 129 LEVKEAAEAAALLLSKGPKVVIVTLGEKGAIVATRGGTEVHVPAFPVKVVDTTGAGDAFLAALAAGLA 196 (196)
T ss_pred CChHHHHHHHHHHHhcCCCEEEEEECCCccEEEecCCceEEcCCccCCcccCCCchHHHHHHHHHHhC
Confidence 442 2466778889999999999999999998 777888888888899999999999999999874
No 48
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=3e-21 Score=152.72 Aligned_cols=207 Identities=20% Similarity=0.232 Sum_probs=158.3
Q ss_pred CCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccC---ccccccccEEE
Q 044512 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELN---MGLIKQAKIFH 78 (230)
Q Consensus 2 ~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~v~ 78 (230)
-+|.|+.|+.+.+.|.+.+|+..++ ..++.+|.....++..+ ++.+.+..+... .......+. ...+.+.+.+.
T Consensus 72 vvG~Deag~~L~~~l~~~~i~~~l~-~~~~r~T~~K~Rv~s~n-QQllRvD~Ee~~-~~~~~~~ll~~~~~~l~~~~~vV 148 (467)
T COG2870 72 VVGKDEAGKALIELLKANGIDSDLL-RDKNRPTIVKLRVLSRN-QQLLRLDFEEKF-PIEDENKLLEKIKNALKSFDALV 148 (467)
T ss_pred eeccchhHHHHHHHHHhcCcccceE-eecCCCceeeeeeeccc-ceEEEecccccC-cchhHHHHHHHHHHHhhcCCEEE
Confidence 4799999999999999999996655 57777999999888643 333333322111 111111111 35678899999
Q ss_pred EccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcch--
Q 044512 79 YGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEK-- 156 (230)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~-- 156 (230)
+|.|.- +-.. .+..+++.|++.|+|+.+||.+.- .+..+.+.+++||..|++...|....+.
T Consensus 149 LSDY~K-G~L~--~~q~~I~~ar~~~~pVLvDPKg~D-------------f~~Y~GAtLiTPN~~E~~~~vg~~~~e~el 212 (467)
T COG2870 149 LSDYAK-GVLT--NVQKMIDLAREAGIPVLVDPKGKD-------------FEKYRGATLITPNLKEFEEAVGKCKSEEEL 212 (467)
T ss_pred Eecccc-ccch--hHHHHHHHHHHcCCcEEECCCCcc-------------hhhhCCCeecCCCHHHHHHHHcccccHHHH
Confidence 988742 2221 268899999999999999997531 2235789999999999999998776542
Q ss_pred HHHHHHHH-hcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 157 DDVVMSLW-HDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 157 ~~~~~~l~-~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.+..+.|. +.+...+++|++++|+.++..++..|+|+...++.|.|||||+.+|.|..+++.|.++++|.+
T Consensus 213 ~~~g~kL~~~~~L~alLvTRsE~GMtL~~~~~~~h~pt~AkEVyDVTGAGDTVIa~la~~laaG~s~~eAc~ 284 (467)
T COG2870 213 EERGQKLKEELDLSALLVTRSEKGMTLFQEGKPLHFPARAKEVYDVTGAGDTVIAVLAAALAAGASLEEACE 284 (467)
T ss_pred HHHHHHHHHhhCcceEEEEeccCCceeecCCcccccchhheeeeeccCCCchHHHHHHHHHHcCCCHHHHHH
Confidence 22234444 478899999999999999998988999998889999999999999999999999999999975
No 49
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=99.87 E-value=4.3e-21 Score=150.47 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=121.6
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHC--CCeEEEeCCC--CCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHHHh
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDA--GVLLSYDPNV--RLPLWPSQDAARDGIKSIWN-HADLIKVSDDEVN 146 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~d~~~--~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~~ 146 (230)
...+++. +|+ +.+....+.+.++++.+++. +.++++||.. +..+|...++..+.+.+++. ++|++++|..|++
T Consensus 71 ~~~~~v~-~G~-l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~l~~~~dvi~pN~~Ea~ 148 (254)
T cd01173 71 LEYDAVL-TGY-LGSAEQVEAVAEIVKRLKEKNPNLLYVCDPVMGDNGKLYVVAEEIVPVYRDLLVPLADIITPNQFELE 148 (254)
T ss_pred ccCCEEE-Eec-CCCHHHHHHHHHHHHHHHHhCCCceEEECCCCCcCCcceecChhHHHHHHHHHHhcCCEECCcHHHHH
Confidence 4567774 453 55677788999999998877 8999999964 23444323556677777777 9999999999999
Q ss_pred hhcCCCCcc---hHHHHHHHHhcCccEEEEEecCC------ceEEEecCceeeecCcccc-ccCCCCcchHHHHHHHHHH
Q 044512 147 FLTKGGDAE---KDDVVMSLWHDNLKLLLVTYGAK------GCGYFTKKFKGRVPGFSVK-TIDTTGAGDAFVGSFLVSV 216 (230)
Q Consensus 147 ~l~~~~~~~---~~~~~~~l~~~g~~~vvvt~g~~------g~~~~~~~~~~~~~~~~~~-~~dt~GaGDaf~ag~~~~l 216 (230)
.|+|.+..+ ..++++.|.+.|++.|++|.|+. |+++++++..++++.++++ ++|++||||+|+|||++++
T Consensus 149 ~l~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~~~~~l 228 (254)
T cd01173 149 LLTGKKINDLEDAKAAARALHAKGPKTVVVTSVELADDDRIEMLGSTATEAWLVQRPKIPFPAYFNGTGDLFAALLLARL 228 (254)
T ss_pred HHcCCCcCCHHHHHHHHHHHHHhCCCEEEEEeeccCCCCcEEEEEEecCccEEEEeeccCCCCCcCChHHHHHHHHHHHH
Confidence 999976543 24567788889999999999985 7777777665566666666 6999999999999999999
Q ss_pred HcCCCcccccc
Q 044512 217 AKDANIFNVKF 227 (230)
Q Consensus 217 ~~g~~~~~a~~ 227 (230)
++|+++++|.+
T Consensus 229 ~~g~~~~~a~~ 239 (254)
T cd01173 229 LKGKSLAEALE 239 (254)
T ss_pred HcCCCHHHHHH
Confidence 99999999865
No 50
>PRK05756 pyridoxamine kinase; Validated
Probab=99.85 E-value=3.3e-20 Score=147.75 Aligned_cols=155 Identities=18% Similarity=0.078 Sum_probs=119.5
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCC--CeEEEeCCCCC---CCCCCHHHHHHHHHHHhhhCcEEeeCHHHH
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAG--VLLSYDPNVRL---PLWPSQDAARDGIKSIWNHADLIKVSDDEV 145 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~---~~~~~~~~~~~~~~~~l~~~dil~~n~~E~ 145 (230)
+.+.+++ .+|+ +.+....+.+.++++.+++.+ ..+++||.... ..|............+++++|+++||..|+
T Consensus 72 l~~~~~v-~~G~-l~~~~~~~~v~~~i~~~k~~~~~~~~v~DPv~~d~~~~~~~~~~~~~~~~~~ll~~adiitpN~~Ea 149 (286)
T PRK05756 72 LGECDAV-LSGY-LGSAEQGEAILDAVRRVKAANPQALYFCDPVMGDPEKGCIVAPGVAEFLRDRALPAADIITPNLFEL 149 (286)
T ss_pred cccCCEE-EECC-CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCCCEEECccHhHHHHHhhcccccEecCCHHHH
Confidence 4577877 5553 566777788899998887765 56889997544 134333333344456899999999999999
Q ss_pred hhhcCCCCcch---HHHHHHHHhcCccEEEEEecCC--------ceEEEecCceeeecCccccc-cCCCCcchHHHHHHH
Q 044512 146 NFLTKGGDAEK---DDVVMSLWHDNLKLLLVTYGAK--------GCGYFTKKFKGRVPGFSVKT-IDTTGAGDAFVGSFL 213 (230)
Q Consensus 146 ~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt~g~~--------g~~~~~~~~~~~~~~~~~~~-~dt~GaGDaf~ag~~ 213 (230)
+.|+|.+..+. .++++.+++.|++.|+||.|+. |+++++++..++++.++++. +|++||||+|+|+|+
T Consensus 150 ~~L~g~~~~~~~~~~~~~~~l~~~g~~~Vvvt~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~GaGD~f~a~~~ 229 (286)
T PRK05756 150 EWLSGRPVETLEDAVAAARALIARGPKIVLVTSLARAGYPADRFEMLLVTADGAWHISRPLVDFMRQPVGVGDLTSALFL 229 (286)
T ss_pred HHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEeccccCCCCCCcEEEEEEECCceEEEecCccCCCCCCCChHHHHHHHHH
Confidence 99999765433 3456778889999999999876 46677777677777777777 799999999999999
Q ss_pred HHHHcCCCcccccc
Q 044512 214 VSVAKDANIFNVKF 227 (230)
Q Consensus 214 ~~l~~g~~~~~a~~ 227 (230)
+++++|+++++|.+
T Consensus 230 a~l~~g~~~~~al~ 243 (286)
T PRK05756 230 ARLLQGGSLEEALE 243 (286)
T ss_pred HHHhcCCCHHHHHH
Confidence 99999999998865
No 51
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=99.84 E-value=5.9e-20 Score=143.94 Aligned_cols=136 Identities=15% Similarity=0.140 Sum_probs=103.7
Q ss_pred HHHHHHHHHHH-HCCCeEEEeCCCCCCCCC--CHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcch---HHHHHHHH
Q 044512 91 SAHMAALKAAK-DAGVLLSYDPNVRLPLWP--SQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEK---DDVVMSLW 164 (230)
Q Consensus 91 ~~~~~~l~~~~-~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~---~~~~~~l~ 164 (230)
+....+++..+ +.+.++++||..+.+.|. ..+...+.+.++++++|+++||+.|++.|+|.+..+. .++++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~vv~DPv~~~~~~~~~~~~~~~~~l~~ll~~~dli~pN~~E~~~L~g~~~~~~~~~~~~a~~l~ 162 (253)
T PRK12413 83 EIAEQALDFIKGHPGIPVVLDPVLVCKETHDVEVSELRQELIQFFPYVTVITPNLVEAELLSGKEIKTLEDMKEAAKKLY 162 (253)
T ss_pred HHHHHHHHHHHhCCCCCEEEcCceecCCCCccccHHHHHHHHHHhccCcEECCCHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 33444444444 468899999998877773 2344556666788999999999999999999765433 35677888
Q ss_pred hcCccEEEEEecCCc-----e-EEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 165 HDNLKLLLVTYGAKG-----C-GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 165 ~~g~~~vvvt~g~~g-----~-~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
+.|++.|+||.|++| . +++.++ ..+.+..++..+|++||||+|+|+|++++++|+++++|.+
T Consensus 163 ~~g~~~Vvvt~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~GaGDaf~a~~~~~l~~g~~l~ea~~ 230 (253)
T PRK12413 163 DLGAKAVVIKGGNRLSQKKAIDLFYDGK-EFVILESPVLEKNNIGAGCTFASSIASQLVKGKSPLEAVK 230 (253)
T ss_pred HcCCCEEEEeCCCCCCCCcceEEEEcCC-EEEEEeecccCCCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 899999999999863 2 344444 3445555667889999999999999999999999999865
No 52
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=99.84 E-value=1.7e-19 Score=143.03 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=114.1
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHH--CCCeEEEeCCCCC---CCCCCHHHHHHHH-HHHhhhCcEEeeCHHH
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKD--AGVLLSYDPNVRL---PLWPSQDAARDGI-KSIWNHADLIKVSDDE 144 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~d~~~~~---~~~~~~~~~~~~~-~~~l~~~dil~~n~~E 144 (230)
+.+.|.++++. +.+....+.+.++++..+. .+.++++||.... ..|.++. ..+.+ ..+++++|+++||..|
T Consensus 86 l~~~d~i~~G~--l~s~~~~~~i~~~l~~~~~~~~~~~vv~DPvm~d~~~~~~~~~~-~~~~~~~~Ll~~advitPN~~E 162 (281)
T PRK08176 86 LRQLRAVTTGY--MGSASQIKILAEWLTALRADHPDLLIMVDPVIGDIDSGIYVKPD-LPEAYRQHLLPLAQGLTPNIFE 162 (281)
T ss_pred cccCCEEEECC--CCCHHHHHHHHHHHHHHHHHCCCCcEEeCCccccCCCCeEECcc-HHHHHHHHhHhhcCEeCCCHHH
Confidence 45789998876 3455556677777766554 4678999997332 2443222 33444 4688999999999999
Q ss_pred HhhhcCCCCcchH---HHHHHHHhcCccEEEEEecCCc-------eEEEecCceeeecCccccccCCCCcchHHHHHHHH
Q 044512 145 VNFLTKGGDAEKD---DVVMSLWHDNLKLLLVTYGAKG-------CGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLV 214 (230)
Q Consensus 145 ~~~l~~~~~~~~~---~~~~~l~~~g~~~vvvt~g~~g-------~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~ 214 (230)
++.|+|.+..+.+ ++++.|++.|++.||||.|+.| +++++++..+..+. +...+|++|+||+|+|+|++
T Consensus 163 a~~L~g~~~~~~~~~~~~~~~l~~~g~~~VvIT~g~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~GaGD~faa~~~a 241 (281)
T PRK08176 163 LEILTGKPCRTLDSAIAAAKSLLSDTLKWVVITSAAGNEENQEMQVVVVTADSVNVISH-PRVDTDLKGTGDLFCAELVS 241 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCEEEEeeccCCCCCCcEEEEEEeCCceEEEec-CccCCCCCChhHHHHHHHHH
Confidence 9999997644433 4667888899999999999987 56666665444443 44457999999999999999
Q ss_pred HHHcCCCccccccc
Q 044512 215 SVAKDANIFNVKFR 228 (230)
Q Consensus 215 ~l~~g~~~~~a~~~ 228 (230)
++++|+++++|.++
T Consensus 242 ~l~~g~~l~~Av~~ 255 (281)
T PRK08176 242 GLLKGKALTDAAHR 255 (281)
T ss_pred HHhcCCCHHHHHHH
Confidence 99999999998653
No 53
>PRK07105 pyridoxamine kinase; Validated
Probab=99.83 E-value=8.3e-20 Score=145.30 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=114.4
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCC--CCCCC-HHHHHHHHHHHhhhCcEEeeCHHHHhhhc
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRL--PLWPS-QDAARDGIKSIWNHADLIKVSDDEVNFLT 149 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~--~~~~~-~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 149 (230)
+.+.|+++. +.+....+.+.++++.+++.+.++++||.... .+|.. .+...+.+.++++++|+++||..|++.|+
T Consensus 75 ~~~aik~G~--l~~~~~~~~v~~~~~~~~~~~~~vv~DPv~~~~~~l~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L~ 152 (284)
T PRK07105 75 KFDAIYSGY--LGSPRQIQIVSDFIKYFKKKDLLVVVDPVMGDNGKLYQGFDQEMVEEMRKLIQKADVITPNLTEACLLL 152 (284)
T ss_pred ccCEEEECc--CCCHHHHHHHHHHHHHhccCCCeEEECCccccCCcCCCCCCHHHHHHHHHHHhhCCEecCCHHHHHHHc
Confidence 678888765 44444556666777666667889999998532 34431 23455667789999999999999999999
Q ss_pred CCCCc-------chHHHHHHHHhcCccEEEEEe-----cCCceEEEecC--ceeeecCccccccCCCCcchHHHHHHHHH
Q 044512 150 KGGDA-------EKDDVVMSLWHDNLKLLLVTY-----GAKGCGYFTKK--FKGRVPGFSVKTIDTTGAGDAFVGSFLVS 215 (230)
Q Consensus 150 ~~~~~-------~~~~~~~~l~~~g~~~vvvt~-----g~~g~~~~~~~--~~~~~~~~~~~~~dt~GaGDaf~ag~~~~ 215 (230)
|.+.. +..++++.+.+.|++.|+||. |..|+++++++ ..++++.+.+. +|++||||+|+|+|+++
T Consensus 153 g~~~~~~~~~~~~~~~~a~~l~~~g~~~Vvvt~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~aa~~~~ 231 (284)
T PRK07105 153 DKPYLEKSYSEEEIKQLLRKLADLGPKIVIITSVPFEDGKIGVAYYDRATDRFWKVFCKYIP-AHYPGTGDIFTSVITGS 231 (284)
T ss_pred CCCcCcCCCCHHHHHHHHHHHHhcCCCEEEEcCeeeCCCeEEEEEEeCCCCeEEEEeecccC-CCcCChhHHHHHHHHHH
Confidence 97532 123466778888999999998 66688877643 34455554444 79999999999999999
Q ss_pred HHcCCCccccccc
Q 044512 216 VAKDANIFNVKFR 228 (230)
Q Consensus 216 l~~g~~~~~a~~~ 228 (230)
+++|+++++|.++
T Consensus 232 l~~g~~l~~av~~ 244 (284)
T PRK07105 232 LLQGDSLPIALDR 244 (284)
T ss_pred HhCCCCHHHHHHH
Confidence 9999999998653
No 54
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=99.83 E-value=1.4e-19 Score=144.20 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=116.1
Q ss_pred ccccccEEEEccccccCchHHHHHHHHHHHHHHCC--CeEEEeCCCCCC---CCCCHHHHHHHH-HHHhhhCcEEeeCHH
Q 044512 70 LIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAG--VLLSYDPNVRLP---LWPSQDAARDGI-KSIWNHADLIKVSDD 143 (230)
Q Consensus 70 ~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~---~~~~~~~~~~~~-~~~l~~~dil~~n~~ 143 (230)
.+.+.|++ .+|+ +.+..+.+.+.++++.+++.+ ..+++||..... .|.. +...+.+ ..+++++|++++|..
T Consensus 71 ~~~~~d~v-~~G~-l~~~~~~~~~~~~l~~~~~~~~~~~vv~Dpv~~d~~~~~~~~-~~~~~~~~~~ll~~adii~pN~~ 147 (286)
T TIGR00687 71 KLNQCDAV-LSGY-LGSAEQVAMVVGIVRQVKQANPQALYVCDPVMGDPEKGCYVA-PDLLEVYREKAIPVADIITPNQF 147 (286)
T ss_pred ccccCCEE-EECC-CCCHHHHHHHHHHHHHHHHhCCCCcEEECCeeeeCCCCeeeC-hhHHHHHHHhccccccEecCCHH
Confidence 34688887 4453 566667788899998888765 668899964321 2222 2333444 468899999999999
Q ss_pred HHhhhcCCCCcch---HHHHHHHHhcCccEEEEE-ecCCce--------EEEecCceeeecCcccc-ccCCCCcchHHHH
Q 044512 144 EVNFLTKGGDAEK---DDVVMSLWHDNLKLLLVT-YGAKGC--------GYFTKKFKGRVPGFSVK-TIDTTGAGDAFVG 210 (230)
Q Consensus 144 E~~~l~~~~~~~~---~~~~~~l~~~g~~~vvvt-~g~~g~--------~~~~~~~~~~~~~~~~~-~~dt~GaGDaf~a 210 (230)
|++.|+|.+..+. .++++.+++.|++.|++| .|.+|+ ++++++..++++.++++ ++|++||||+|+|
T Consensus 148 Ea~~L~g~~~~~~~~~~~~~~~l~~~g~~~Viit~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~A 227 (286)
T TIGR00687 148 ELELLTGRKINTVEEALAAADALIAMGPDIVLVTHLARAGSQRDRDFEGLVVTQEGRWHISRPLAVFMRQPVGTGDLIAA 227 (286)
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceeEEEEcCCceEEEeccCcCCCCCCCChHHHHHH
Confidence 9999999765433 245677888899999999 687774 34555556667766777 6999999999999
Q ss_pred HHHHHHHcCCCcccccc
Q 044512 211 SFLVSVAKDANIFNVKF 227 (230)
Q Consensus 211 g~~~~l~~g~~~~~a~~ 227 (230)
||++++++|+++++|.+
T Consensus 228 ~~l~~l~~g~~~~~al~ 244 (286)
T TIGR00687 228 LLLATLLHGNSLKEALE 244 (286)
T ss_pred HHHHHHhcCCCHHHHHH
Confidence 99999999999998864
No 55
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=99.83 E-value=2.1e-19 Score=139.97 Aligned_cols=151 Identities=18% Similarity=0.071 Sum_probs=113.6
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHC-CCeEEEeCCCCCCCC---CCHHHHHHHHHHHhhhCcEEeeCHHHHhhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDA-GVLLSYDPNVRLPLW---PSQDAARDGIKSIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~~~~---~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 148 (230)
+.+++.++.+ .+ .+....+.+.+++. +.++++||..+.+.+ ...+........+++++|+++||..|++.|
T Consensus 68 ~~~~i~~G~l--~~---~~~~~~i~~~~~~~~~~~vv~Dpv~~~~~~~~~~~~~~~~~~~~~ll~~~dvitpN~~Ea~~L 142 (242)
T cd01169 68 PVDAIKIGML--GS---AEIIEAVAEALKDYPDIPVVLDPVMVAKSGDSLLDDDAIEALRELLLPLATLITPNLPEAELL 142 (242)
T ss_pred CCCEEEECCC--CC---HHHHHHHHHHHHhCCCCcEEECCceeCCCCCcccCHHHHHHHHHHhhccCeEEeCCHHHHHHH
Confidence 5688877543 22 35556666666665 789999997643221 112222334456779999999999999999
Q ss_pred cCCCCcch---HHHHHHHHhcCccEEEEEecCCc-----eEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCC
Q 044512 149 TKGGDAEK---DDVVMSLWHDNLKLLLVTYGAKG-----CGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDA 220 (230)
Q Consensus 149 ~~~~~~~~---~~~~~~l~~~g~~~vvvt~g~~g-----~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~ 220 (230)
+|....+. .++++.+.+.|++.||||.|++| .+++.++..++++.++++++|++|+||+|+|+|++++++|+
T Consensus 143 ~g~~~~~~~~~~~~~~~l~~~g~~~Vvit~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~a~l~~g~ 222 (242)
T cd01169 143 TGLEIATEEDMMKAAKALLALGAKAVLIKGGHLPGDEAVDVLYDGGGFFEFESPRIDTKNTHGTGCTLSSAIAANLAKGL 222 (242)
T ss_pred hCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEEEEECCcEEEEecceeCCCCCCChHHHHHHHHHHHHHCCC
Confidence 99765432 34667788899999999999875 35666666778888888899999999999999999999999
Q ss_pred Cccccccc
Q 044512 221 NIFNVKFR 228 (230)
Q Consensus 221 ~~~~a~~~ 228 (230)
++++|.++
T Consensus 223 ~~~~A~~~ 230 (242)
T cd01169 223 SLEEAVRE 230 (242)
T ss_pred CHHHHHHH
Confidence 99998753
No 56
>PRK12412 pyridoxal kinase; Reviewed
Probab=99.83 E-value=2e-19 Score=141.80 Aligned_cols=151 Identities=11% Similarity=0.015 Sum_probs=113.4
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCe-EEEeCCCCCCC---CCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVL-LSYDPNVRLPL---WPSQDAARDGIKSIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~~~~~~~---~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 148 (230)
+.+.+.++.+ . +.+....+++.+++.+.+ +++||....+- ...+.........+++++|+++||..|++.|
T Consensus 72 ~~~~ikiG~l--~---~~~~v~~i~~~~~~~~~~~vv~DPv~~~~~g~~~~~~~~~~~~~~~ll~~advitpN~~Ea~~L 146 (268)
T PRK12412 72 GVDALKTGML--G---SVEIIEMVAETIEKHNFKNVVVDPVMVCKGADEALHPETNDCLRDVLVPKALVVTPNLFEAYQL 146 (268)
T ss_pred CCCEEEECCC--C---CHHHHHHHHHHHHhcCCCCEEECcCeeeCCCCcCCChHHHHHHHHhhhccceEEcCCHHHHHHH
Confidence 3688877764 2 336667777777777765 99999743221 1112222333456889999999999999999
Q ss_pred cCCCCcc---hHHHHHHHHhcCccEEEEEecCCce------EEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcC
Q 044512 149 TKGGDAE---KDDVVMSLWHDNLKLLLVTYGAKGC------GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219 (230)
Q Consensus 149 ~~~~~~~---~~~~~~~l~~~g~~~vvvt~g~~g~------~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g 219 (230)
+|.+..+ ..++++.|++.|++.|+||.|++|. +++.++..++++.++++.+|++||||+|+|+|+++|++|
T Consensus 147 ~g~~~~~~~~~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g 226 (268)
T PRK12412 147 SGVKINSLEDMKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKG 226 (268)
T ss_pred hCcCCCCHHHHHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCC
Confidence 9976433 3456778888999999999998753 445555556788888899999999999999999999999
Q ss_pred CCccccccc
Q 044512 220 ANIFNVKFR 228 (230)
Q Consensus 220 ~~~~~a~~~ 228 (230)
+++++|.++
T Consensus 227 ~~l~eA~~~ 235 (268)
T PRK12412 227 KPVKEAVKT 235 (268)
T ss_pred CCHHHHHHH
Confidence 999998753
No 57
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=99.83 E-value=2.8e-19 Score=140.08 Aligned_cols=150 Identities=17% Similarity=0.113 Sum_probs=114.4
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCC-eEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGV-LLSYDPNVRL----PLWPSQDAARDGIKSIWNHADLIKVSDDEVNF 147 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~ 147 (230)
+.+.+.++.+ . +.+.+..+++.+++.+. ++++||.... .++. .+........+++++|+++||..|++.
T Consensus 67 ~~~aikiG~l--~---~~~~~~~i~~~~~~~~~~~vVlDPv~~~~~g~~l~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 140 (254)
T TIGR00097 67 PVDAAKTGML--A---SAEIVEAVARKLREYPVRPLVVDPVMVAKSGAPLLE-EEAIEALRKRLLPLATLITPNLPEAEA 140 (254)
T ss_pred CCCEEEECCc--C---CHHHHHHHHHHHHhcCCCcEEECCccccCCCCcCCC-HHHHHHHHHhccccccEecCCHHHHHH
Confidence 4577877653 2 33667777777788888 6999997432 2232 222223345688999999999999999
Q ss_pred hcCCCCcc---hHHHHHHHHhcCccEEEEEecC----Cce-EEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcC
Q 044512 148 LTKGGDAE---KDDVVMSLWHDNLKLLLVTYGA----KGC-GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219 (230)
Q Consensus 148 l~~~~~~~---~~~~~~~l~~~g~~~vvvt~g~----~g~-~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g 219 (230)
|+|.+..+ ..++++.|.+.|++.|+||.|+ +|. +++.++..++++.++++.+|++|+||+|.|+|++++++|
T Consensus 141 L~g~~~~~~~~~~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g 220 (254)
T TIGR00097 141 LLGTKIRTEQDMIKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKG 220 (254)
T ss_pred HhCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCC
Confidence 99975433 2356778888999999999997 344 556677677888888899999999999999999999999
Q ss_pred CCccccccc
Q 044512 220 ANIFNVKFR 228 (230)
Q Consensus 220 ~~~~~a~~~ 228 (230)
+++++|.++
T Consensus 221 ~~l~eA~~~ 229 (254)
T TIGR00097 221 LSLKEAVKE 229 (254)
T ss_pred CCHHHHHHH
Confidence 999998653
No 58
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=99.82 E-value=6.3e-19 Score=139.11 Aligned_cols=150 Identities=21% Similarity=0.184 Sum_probs=113.2
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCC-eEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGV-LLSYDPNVRL----PLWPSQDAARDGIKSIWNHADLIKVSDDEVNF 147 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~ 147 (230)
+.+.+.++.+ .+ .+....+++.+++.+. ++++||.... .++. .+.......++++++|+++||..|++.
T Consensus 73 ~~~ai~iG~l--~~---~~~~~~i~~~~~~~~~~~vv~DPv~~~~~~~~~~~-~~~~~~~~~~ll~~~dvitpN~~Ea~~ 146 (266)
T PRK06427 73 RIDAVKIGML--AS---AEIIETVAEALKRYPIPPVVLDPVMIAKSGDPLLA-DDAVAALRERLLPLATLITPNLPEAEA 146 (266)
T ss_pred CCCEEEECCc--CC---HHHHHHHHHHHHhCCCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhCcCeEEcCCHHHHHH
Confidence 5678877753 22 3566666777777675 7999997442 2332 222233334688999999999999999
Q ss_pred hcCCCCcc----hHHHHHHHHhcCccEEEEEecC--Cce----EEEecCceeeecCccccccCCCCcchHHHHHHHHHHH
Q 044512 148 LTKGGDAE----KDDVVMSLWHDNLKLLLVTYGA--KGC----GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVA 217 (230)
Q Consensus 148 l~~~~~~~----~~~~~~~l~~~g~~~vvvt~g~--~g~----~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~ 217 (230)
|+|.+..+ ..++++.|.+.|++.||||.|+ +|. ++++++..++++.++++.+|++|+||+|+|+|+++++
T Consensus 147 L~g~~~~~~~~~~~~~a~~l~~~g~~~Vvit~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~GaGD~f~a~l~~~l~ 226 (266)
T PRK06427 147 LTGLPIADTEDEMKAAARALHALGCKAVLIKGGHLLDGEESVDWLFDGEGEERFSAPRIPTKNTHGTGCTLSAAIAAELA 226 (266)
T ss_pred HhCCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCceeEEEEeCCcEEEEEeeeECCCCCCChHHHHHHHHHHHHH
Confidence 99975432 2456778888999999999998 553 5666666677888888889999999999999999999
Q ss_pred cCCCccccccc
Q 044512 218 KDANIFNVKFR 228 (230)
Q Consensus 218 ~g~~~~~a~~~ 228 (230)
+|+++++|.++
T Consensus 227 ~g~~l~~A~~~ 237 (266)
T PRK06427 227 KGASLLDAVQT 237 (266)
T ss_pred CCCCHHHHHHH
Confidence 99999998753
No 59
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.5e-18 Score=125.67 Aligned_cols=201 Identities=15% Similarity=0.259 Sum_probs=144.7
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEe-cCCeeeEEEecCCCccccccccccCccccccccEEEEcccc
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLK-KNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSIS 83 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~ 83 (230)
.....+.+++.|++.|||++++..... ..+++.++++ ..|+++++++. .+....+..++.+-.+.+..|||+.+-.
T Consensus 66 r~~~f~~lLddl~~rgIdishcpftd~-~pp~ssiI~~r~s~trTil~~d--ks~p~vT~~dF~kvdl~qy~WihfE~Rn 142 (308)
T KOG2947|consen 66 RGHVFRFLLDDLRRRGIDISHCPFTDH-SPPFSSIIINRNSGTRTILYCD--KSLPDVTATDFEKVDLTQYGWIHFEARN 142 (308)
T ss_pred cchhHHHHHHHHHhcCCCcccCccccC-CCCcceEEEecCCCceEEEEec--CCCccccHHHhhhcccceeeeEEEecCC
Confidence 344568999999999999999876655 5566666665 47888888873 4556677777777778999999998742
Q ss_pred ccCchHHHHHHHHHHHHHH--------CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcc
Q 044512 84 LISEPCRSAHMAALKAAKD--------AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAE 155 (230)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~--------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~ 155 (230)
+.++ .+++....+ .++.+++|... .++.+..++..+|+++.+.+-++.+ |.. +
T Consensus 143 -----p~et-lkM~~~I~~~N~r~pe~qrI~vSvd~en----------~req~~~l~am~DyVf~sK~~a~~~-gfk--s 203 (308)
T KOG2947|consen 143 -----PSET-LKMLQRIDAHNTRQPEEQRIRVSVDVEN----------PREQLFQLFAMCDYVFVSKDVAKHL-GFK--S 203 (308)
T ss_pred -----hHHH-HHHHHHHHHhhcCCCccceEEEEEEecC----------cHHHHHHHhhcccEEEEEHHHHhhh-ccC--C
Confidence 2233 233322221 34567777753 2677888999999999999888876 333 3
Q ss_pred hHHHHHHHHh---cC-c-cEEEEEecCCceEEEe-cCceeeecCccc-cccCCCCcchHHHHHHHHHH-HcCCCcccccc
Q 044512 156 KDDVVMSLWH---DN-L-KLLLVTYGAKGCGYFT-KKFKGRVPGFSV-KTIDTTGAGDAFVGSFLVSV-AKDANIFNVKF 227 (230)
Q Consensus 156 ~~~~~~~l~~---~g-~-~~vvvt~g~~g~~~~~-~~~~~~~~~~~~-~~~dt~GaGDaf~ag~~~~l-~~g~~~~~a~~ 227 (230)
.+++++.+.. .| + ..+|+..++.|+-... +|+.+++++.+. +++|+.|+||+|.|||+|++ .+++++.||-.
T Consensus 204 ~rea~~~l~~r~~~~~pkpv~I~~w~~eGA~~l~adg~yfev~a~~ppkvVD~lg~~DtF~A~vIyA~lk~~r~l~eAvd 283 (308)
T KOG2947|consen 204 PREACEGLYGRVPKGKPKPVLICPWASEGAGALGADGKYFEVDAFKPPKVVDTLGAGDTFNAGVIYALLKQGRSLAEAVD 283 (308)
T ss_pred HHHHHHHHHhhcccCCCCcEEEeccccccccccCCCCCEEecCCCCCccceeeccCCCcchHHHHHHHHHhhhhHHHHHH
Confidence 3457766553 12 3 4677788999887665 457888888754 79999999999999999994 56899988743
No 60
>PRK12616 pyridoxal kinase; Reviewed
Probab=99.80 E-value=2.4e-18 Score=135.81 Aligned_cols=151 Identities=14% Similarity=0.058 Sum_probs=110.3
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCC-CeEEEeCCCCCC---CCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAG-VLLSYDPNVRLP---LWPSQDAARDGIKSIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 148 (230)
+.+.+.++.+ .+ .+.+..+.+..++.+ .++++||....+ ....++........+++.+|+++||..|++.|
T Consensus 74 ~~~aikiG~l--~s---~~~i~~i~~~l~~~~~~~vV~DPV~~~~~g~~~l~~~~~~~l~~~L~~~advitpN~~Ea~~L 148 (270)
T PRK12616 74 GVDAMKTGML--PT---VDIIELAADTIKEKQLKNVVIDPVMVCKGANEVLYPEHAEALREQLAPLATVITPNLFEAGQL 148 (270)
T ss_pred CCCEEEECCC--CC---HHHHHHHHHHHHhcCCCCEEEccceecCCCCcccCHHHHHHHHHHhhccceEecCCHHHHHHH
Confidence 4577877653 33 345566666666665 469999986322 11112223333345888999999999999999
Q ss_pred cCC-CCcc---hHHHHHHHHhcCccEEEEEecCCce------EEEecCceeeecCccccccCCCCcchHHHHHHHHHHHc
Q 044512 149 TKG-GDAE---KDDVVMSLWHDNLKLLLVTYGAKGC------GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAK 218 (230)
Q Consensus 149 ~~~-~~~~---~~~~~~~l~~~g~~~vvvt~g~~g~------~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~ 218 (230)
+|. ...+ ..++++.+.+.|++.|+||.|++|. ++++++..++++.++++..+++|+||+|+|+|++++++
T Consensus 149 ~g~~~~~~~~~~~~aa~~l~~~G~~~VvVt~G~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t~GaGD~fsaalaa~l~~ 228 (270)
T PRK12616 149 SGMGEIKTVEQMKEAAKKIHELGAQYVVITGGGKLKHEKAVDVLYDGETAEVLESEMIDTPYTHGAGCTFSAAVTAELAK 228 (270)
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCCceEEEEEECCeEEEEEeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 986 2322 2356778888999999999998752 55666666778888888999999999999999999999
Q ss_pred CCCccccccc
Q 044512 219 DANIFNVKFR 228 (230)
Q Consensus 219 g~~~~~a~~~ 228 (230)
|+++++|.++
T Consensus 229 g~~l~~Av~~ 238 (270)
T PRK12616 229 GSEVKEAIYA 238 (270)
T ss_pred CCCHHHHHHH
Confidence 9999998653
No 61
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=99.79 E-value=2.9e-18 Score=144.05 Aligned_cols=139 Identities=19% Similarity=0.122 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcch---HHHHH
Q 044512 89 CRSAHMAALKAAKDAGVLLSYDPNVRL----PLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEK---DDVVM 161 (230)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~---~~~~~ 161 (230)
+.+.+..+++.+++.+.++++||..+. .+|. .+.......++++++|+++||..|++.|+|.+..+. .++++
T Consensus 82 ~~e~~~~i~~~~k~~g~~vv~DPv~~~~sG~~l~~-~~~~~~l~~~llp~adli~pN~~Ea~~L~g~~i~~~~d~~~aa~ 160 (448)
T PRK08573 82 NREIIEAVAKTVSKYGFPLVVDPVMIAKSGAPLLR-EDAVDALIKRLLPLATVVTPNRPEAEKLTGMKIRSVEDARKAAK 160 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEcCccccCCCCcCCC-HHHHHHHHHhhhccCEEEcCCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 347788888899999999999997543 3443 222233446788999999999999999999764432 34667
Q ss_pred HHHh-cCccEEEEEecC----Cce-EEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 162 SLWH-DNLKLLLVTYGA----KGC-GYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 162 ~l~~-~g~~~vvvt~g~----~g~-~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
.|.. .|++.|+||.|+ +|+ +++.++..++++.++++++|++||||+|+|+|++++++|+++++|.++
T Consensus 161 ~L~~~~G~~~VvVt~G~~~g~~~~~~~~~~~~~~~~~~~~v~~~dt~GAGDaFsAa~aa~l~~G~~l~eAl~~ 233 (448)
T PRK08573 161 YIVEELGAEAVVVKGGHLEGEEAVDVLYHNGTFREFRAPRVESGCTHGTGCSFSAAIAAGLAKGLDPEEAIKT 233 (448)
T ss_pred HHHHHcCCCEEEEecccCCCCceeEEEEECCeEEEEEecCcCCCCCCChHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 7764 799999999985 343 445566667888888899999999999999999999999999998753
No 62
>PTZ00344 pyridoxal kinase; Provisional
Probab=99.70 E-value=8.9e-16 Score=122.77 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=105.6
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCC--CeEEEeCCC--CCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAG--VLLSYDPNV--RLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~~~--~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 148 (230)
+.+++.++. +.+....+.+.++++.+++.+ .++++||.. +..+|. .+...+.+.++++++|++++|..|++.|
T Consensus 77 ~~~~v~sG~--l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~-~~~~~~~~~~ll~~~dii~pN~~E~~~L 153 (296)
T PTZ00344 77 DYTYVLTGY--INSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYV-KEEVVDAYRELIPYADVITPNQFEASLL 153 (296)
T ss_pred cCCEEEECC--CCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEe-CHHHHHHHHHHhhhCCEEeCCHHHHHHH
Confidence 345665544 344444455556665555555 479999864 445564 4566777788999999999999999999
Q ss_pred cCCCCcch---HHHHHHHHhcCccEEEEE---ecCCc----eEEEe--c----CceeeecCccccccCCCCcchHHHHHH
Q 044512 149 TKGGDAEK---DDVVMSLWHDNLKLLLVT---YGAKG----CGYFT--K----KFKGRVPGFSVKTIDTTGAGDAFVGSF 212 (230)
Q Consensus 149 ~~~~~~~~---~~~~~~l~~~g~~~vvvt---~g~~g----~~~~~--~----~~~~~~~~~~~~~~dt~GaGDaf~ag~ 212 (230)
+|.+..+. .++++.+.+.|++.|||| .+.+| +++.. . +..+.+..++++ ++++|+||+|+|+|
T Consensus 154 ~g~~~~~~~~~~~~~~~l~~~g~~~VvVTg~~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~GaGD~f~A~~ 232 (296)
T PTZ00344 154 SGVEVKDLSDALEAIDWFHEQGIPVVVITSFREDEDPTHLRFLLSCRDKDTKNNKRFTGKVPYIE-GRYTGTGDLFAALL 232 (296)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEeecCCCCCCcEEEEEEeccccCCCceeEEEeccccC-CCCCCchHHHHHHH
Confidence 99764332 346677888899999999 44455 34432 1 234556666665 57799999999999
Q ss_pred HHHHHcCCCcccccc
Q 044512 213 LVSVAKDANIFNVKF 227 (230)
Q Consensus 213 ~~~l~~g~~~~~a~~ 227 (230)
++.+.+| ++++|.+
T Consensus 233 ~a~l~~g-~~~~a~~ 246 (296)
T PTZ00344 233 LAFSHQH-PMDLAVG 246 (296)
T ss_pred HHHHhcC-CHHHHHH
Confidence 9888888 9888865
No 63
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=99.69 E-value=9.3e-16 Score=130.97 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=110.2
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCe-EEEeCCCC---CCCCCCHHHHHHHH-HHHhhhCcEEeeCHHHHhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVL-LSYDPNVR---LPLWPSQDAARDGI-KSIWNHADLIKVSDDEVNF 147 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~~~~---~~~~~~~~~~~~~~-~~~l~~~dil~~n~~E~~~ 147 (230)
+.+.+.++.+ .+ .+.+..+++.+++.+.+ +++||... ...+.+ +...+.+ .++++++|+++||..|++.
T Consensus 78 ~~~aik~G~l--~~---~~~i~~i~~~l~~~~~~~vVlDPV~~~~~G~~l~~-~~~~~~l~~~Ll~~adiitPN~~Ea~~ 151 (502)
T PLN02898 78 PVDVVKTGML--PS---AEIVKVLCQALKEFPVKALVVDPVMVSTSGDVLAG-PSILSALREELLPLATIVTPNVKEASA 151 (502)
T ss_pred CCCEEEECCc--CC---HHHHHHHHHHHHhCCCCCEEEccccccCCCCccCC-HHHHHHHHHhhhccCeEEcCCHHHHHH
Confidence 4577777653 22 46667777777777764 99999632 112222 2233334 4688999999999999999
Q ss_pred hcCCCC-c---chHHHHHHHHhcCccEEEEEecCCc------eEEEecCceeeecCccccccCCCCcchHHHHHHHHHHH
Q 044512 148 LTKGGD-A---EKDDVVMSLWHDNLKLLLVTYGAKG------CGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVA 217 (230)
Q Consensus 148 l~~~~~-~---~~~~~~~~l~~~g~~~vvvt~g~~g------~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~ 217 (230)
|+|... . +..++++.|.+.|++.|+||.|+.+ .++++++..++++.++++.+|++|+||+|.|+|+++++
T Consensus 152 L~g~~~~~~~~~~~~~a~~l~~~G~~~VvItgg~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~t~GaGD~fsaaiaa~l~ 231 (502)
T PLN02898 152 LLGGDPLETVADMRSAAKELHKLGPRYVLVKGGHLPDSLDAVDVLYDGTEFHELRSSRIKTRNTHGTGCTLASCIAAELA 231 (502)
T ss_pred HhCCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCcceEEEEcCCeEEEEecceeCCCCCCchhhhHHHHHHHHHH
Confidence 998532 1 2345677888899999999998753 35556566667888888889999999999999999999
Q ss_pred cCCCcccccc
Q 044512 218 KDANIFNVKF 227 (230)
Q Consensus 218 ~g~~~~~a~~ 227 (230)
+|+++++|.+
T Consensus 232 ~G~~l~eAv~ 241 (502)
T PLN02898 232 KGSDMLSAVK 241 (502)
T ss_pred cCCCHHHHHH
Confidence 9999999875
No 64
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=99.69 E-value=5.6e-16 Score=132.39 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCC--HHHHHHHH-HHHhhhCcEEeeCHHHHhhhcCCC-Ccc---hHH
Q 044512 90 RSAHMAALKAAKDAGVLLSYDPNVRL----PLWPS--QDAARDGI-KSIWNHADLIKVSDDEVNFLTKGG-DAE---KDD 158 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d~~~~~----~~~~~--~~~~~~~~-~~~l~~~dil~~n~~E~~~l~~~~-~~~---~~~ 158 (230)
.+.+..+++..+ +.++++||.... .++.. .+...+.+ .++++.+|+++||..|++.|+|.+ ..+ ..+
T Consensus 311 ~e~i~~i~~~l~--~~~vV~DPV~~~~~G~~l~~~~~~~~~~~~~~~~Ll~~advitPN~~Ea~~L~g~~~~~~~~~~~~ 388 (504)
T PTZ00347 311 ARQLEIVIEKLK--NLPMVVDPVLVATSGDDLVAQKNADDVLAMYKERIFPMATIITPNIPEAERILGRKEITGVYEARA 388 (504)
T ss_pred HHHHHHHHHHhc--CCCEEEcccceeCCCCcccchhHHHHHHHHHHHhccCcceEEeCCHHHHHHHhCCCCCCCHHHHHH
Confidence 355555555553 678999997532 22321 11112233 367899999999999999999964 222 235
Q ss_pred HHHHHHhcCccEEEEEecCCc-------eEEEec--CceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccccccc
Q 044512 159 VVMSLWHDNLKLLLVTYGAKG-------CGYFTK--KFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKFR 228 (230)
Q Consensus 159 ~~~~l~~~g~~~vvvt~g~~g-------~~~~~~--~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~~ 228 (230)
+++.+.+.|++.||||.|.+| .+++.+ +..++++.++++++|++|+||+|+|+|++++++|+++++|.++
T Consensus 389 aa~~l~~~G~~~VvVtgg~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~GaGD~fsaaiaa~la~G~~l~eAv~~ 467 (504)
T PTZ00347 389 AAQALAQYGSRYVLVKGGHDLIDPEACRDVLYDREKDRFYEFTANRIATINTHGTGCTLASAISSFLARGYTVPDAVER 467 (504)
T ss_pred HHHHHHhcCCCEEEEeCCCCCcCCCcceEEEEcCCCCeEEEEEeeeECCCCCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 667888899999999999863 344442 3566788888889999999999999999999999999998753
No 65
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=99.65 E-value=2.9e-15 Score=116.62 Aligned_cols=151 Identities=17% Similarity=0.113 Sum_probs=102.3
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCC---CCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhc
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVR---LPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLT 149 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 149 (230)
+.+.+.++. +.+....+.+.+++ ++.+.++++||... ......++.......++++.+|+++||..|++.|+
T Consensus 60 ~~~aikiG~--l~~~~~v~~i~~~l---~~~~~~vV~DPVm~~~~g~~~~~~~~~~~~~~~Llp~AdiitPN~~Ea~~L~ 134 (246)
T PF08543_consen 60 KFDAIKIGY--LGSAEQVEIIADFL---KKPKIPVVLDPVMGDSGGYYYVDPDVVEAMREELLPLADIITPNLTEAELLT 134 (246)
T ss_dssp C-SEEEE-S---SSHHHHHHHHHHH---HHTTTEEEEE---EETTTECTSSHHHHHHHHHHCGGG-SEEE-BHHHHHHHH
T ss_pred cccEEEEcc--cCCchhhhhHHHHH---hccCCCEEEecccccCCCCcCCCHHHHHHHHhccCCcCeEEeCCHHHHHHHh
Confidence 678887775 34443334444444 55667999999532 11222233334444459999999999999999999
Q ss_pred CCCCcchH---HHHHHHHhcCccEEEEEecCC----c---eEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcC
Q 044512 150 KGGDAEKD---DVVMSLWHDNLKLLLVTYGAK----G---CGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219 (230)
Q Consensus 150 ~~~~~~~~---~~~~~l~~~g~~~vvvt~g~~----g---~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g 219 (230)
|.+..+.+ ++++.|++.|++.|+||.+.. + .+++.++..+.+..++.+..+..|+||.|.|+|++.|++|
T Consensus 135 g~~i~~~~~~~~~~~~l~~~G~~~VvItg~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~GTGd~fss~laa~l~~g 214 (246)
T PF08543_consen 135 GREINSEEDIEEAAKALLALGPKNVVITGGHLDGDEGIITDVLYDGGEFYWLSSPRIPTGSFHGTGDLFSSALAAFLAKG 214 (246)
T ss_dssp TS--SSHHHHHHHHHHHHHTS-SEEEEEEEEGGSSCEEEEEEEETTSEEEEEEEEEECTSGCTTHHHHHHHHHHHHHHTT
T ss_pred CCCCCChHhHHHHHHHHHHhCCceEEEeeeccccccccccceeeeccceeecceeEEcCCCCCCchhHHHHHHHHHHHcC
Confidence 97665543 467888889999999998863 1 3445566777777777776789999999999999999999
Q ss_pred CCccccccc
Q 044512 220 ANIFNVKFR 228 (230)
Q Consensus 220 ~~~~~a~~~ 228 (230)
+++++|.++
T Consensus 215 ~~l~~Av~~ 223 (246)
T PF08543_consen 215 YSLEEAVEK 223 (246)
T ss_dssp SSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999998653
No 66
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=99.64 E-value=1.1e-14 Score=111.52 Aligned_cols=150 Identities=13% Similarity=0.046 Sum_probs=112.1
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCC-CeEEEeCCCCCC---CCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAG-VLLSYDPNVRLP---LWPSQDAARDGIKSIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~d~~~~~~---~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 148 (230)
..+.+=++.+ . +.+.+..+.+..++.+ .++++||....+ ..-.++.......++++++++++||..|++.|
T Consensus 72 ~v~avKtGML--~---~~eiie~va~~l~~~~~~~vV~DPVmvaksG~~Ll~~~a~~~l~~~LlP~a~vvTPNl~EA~~L 146 (263)
T COG0351 72 PVDAVKTGML--G---SAEIIEVVAEKLKKYGIGPVVLDPVMVAKSGDPLLDEEAVEALREELLPLATVVTPNLPEAEAL 146 (263)
T ss_pred CCCEEEECCc--C---CHHHHHHHHHHHHhcCCCcEEECceEEEcCCCcccChHHHHHHHHHhhccCeEecCCHHHHHHH
Confidence 3455655543 2 3466677777777777 779999953222 11113333444458999999999999999999
Q ss_pred cCC-CCcchH---HHHHHHHhcCccEEEEEecCCc----eEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCC
Q 044512 149 TKG-GDAEKD---DVVMSLWHDNLKLLLVTYGAKG----CGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDA 220 (230)
Q Consensus 149 ~~~-~~~~~~---~~~~~l~~~g~~~vvvt~g~~g----~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~ 220 (230)
+|. ...+.+ ++++.+.+.|++.|+|+.|... .+++.++..+.++.++++-.++.|+|++|.|++.+.|++|.
T Consensus 147 ~g~~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~~~~D~l~~~~~~~~f~~~ri~t~~tHGTGCTlSaAIaa~LA~G~ 226 (263)
T COG0351 147 SGLPKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEGEAVDVLYDGGSFYTFEAPRIPTKNTHGTGCTLSAAIAANLAKGL 226 (263)
T ss_pred cCCCccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCCCceeEEEcCCceEEEeccccCCCCCCCccHHHHHHHHHHHHcCC
Confidence 995 554443 3456677899999999988743 45566677888899999999999999999999999999999
Q ss_pred Ccccccc
Q 044512 221 NIFNVKF 227 (230)
Q Consensus 221 ~~~~a~~ 227 (230)
++++|-+
T Consensus 227 ~l~~AV~ 233 (263)
T COG0351 227 SLEEAVK 233 (263)
T ss_pred CHHHHHH
Confidence 9999854
No 67
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=99.64 E-value=3.9e-15 Score=127.76 Aligned_cols=150 Identities=18% Similarity=0.118 Sum_probs=106.2
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRL----PLWPSQDAARDGIKSIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l 148 (230)
..+.+.++. +.+....+.+.++++.. .+.++++||..+. .++ .+...+.+.++++++|+++||..|++.|
T Consensus 98 ~~~aikiG~--l~s~~~i~~v~~~l~~~--~~~~vVlDPv~~~~~G~~l~--~~~~~~~~~~Ll~~advItPN~~Ea~~L 171 (530)
T PRK14713 98 TVDAVKIGM--LGDAEVIDAVRTWLAEH--RPPVVVLDPVMVATSGDRLL--EEDAEAALRELVPRADLITPNLPELAVL 171 (530)
T ss_pred CCCEEEECC--cCCHHHHHHHHHHHHhC--CCCCEEECCcccCCCCCCCC--CHHHHHHHHHHhhhhheecCChHHHHHH
Confidence 356777754 34444445555555433 2346899997542 233 2345666778999999999999999999
Q ss_pred cCCCCc-ch---HHHHHHHHhcCccEEEEEecCC------ceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHc
Q 044512 149 TKGGDA-EK---DDVVMSLWHDNLKLLLVTYGAK------GCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAK 218 (230)
Q Consensus 149 ~~~~~~-~~---~~~~~~l~~~g~~~vvvt~g~~------g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~ 218 (230)
+|.+.. +. .++++.+...+...||||.|.. ++++..++..++++.++++.+|++|+||+|.|+|+++|++
T Consensus 172 tg~~~~~~~~d~~~aa~~L~~~~g~~VvItgG~~~~~~~~d~~~~~~~~~~~~~~~~v~~~~t~GaGD~fsaalaa~La~ 251 (530)
T PRK14713 172 LGEPPATTWEEALAQARRLAAETGTTVLVKGGHLDGQRAPDALVGPDGAVTEVPGPRVDTRNTHGTGCSLSSALATRLGR 251 (530)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCCCCcceEEEEcCCCeEEEEeeeeeCCCCCCcHHHHHHHHHHHHHHC
Confidence 996532 22 2345677665556899998864 2333334456778888889999999999999999999999
Q ss_pred CCCccccccc
Q 044512 219 DANIFNVKFR 228 (230)
Q Consensus 219 g~~~~~a~~~ 228 (230)
|+++++|.++
T Consensus 252 G~~l~eAv~~ 261 (530)
T PRK14713 252 GGDWAAALRW 261 (530)
T ss_pred CCCHHHHHHH
Confidence 9999998753
No 68
>PLN02978 pyridoxal kinase
Probab=99.63 E-value=1.9e-14 Score=115.55 Aligned_cols=151 Identities=13% Similarity=0.032 Sum_probs=108.3
Q ss_pred ccEEEEccccccCchHHHHHHHHHHHHHH--CCCeEEEeCCCCC--CCCCCHHHHHHHHH-HHhhhCcEEeeCHHHHhhh
Q 044512 74 AKIFHYGSISLISEPCRSAHMAALKAAKD--AGVLLSYDPNVRL--PLWPSQDAARDGIK-SIWNHADLIKVSDDEVNFL 148 (230)
Q Consensus 74 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~d~~~~~--~~~~~~~~~~~~~~-~~l~~~dil~~n~~E~~~l 148 (230)
.+.+.++. +.+....+.+.++++.+++ .+.++++||.... .+|.. +...+.+. .+++++|+++||..|++.|
T Consensus 87 ~~ai~~G~--l~s~~~~~~v~~~l~~~~~~~~~~~vvlDPvm~d~G~l~~~-~~~~~~~~~~ll~~adiitPN~~Ea~~L 163 (308)
T PLN02978 87 YTHLLTGY--IGSVSFLRTVLRVVKKLRSVNPNLTYVCDPVLGDEGKLYVP-PELVPVYREKVVPLATMLTPNQFEAEQL 163 (308)
T ss_pred cCEEEecc--cCCHHHHHHHHHHHHHHHHhCCCCeEEECCcccCCCCccCC-hhHHHHHHHHHHhhCCeeccCHHHHHHH
Confidence 67776654 4556667888888888876 4467899998643 34532 33445454 5999999999999999999
Q ss_pred cCCCCcch---HHHHHHHHhcCccEEEEEecC-CceEE-Ee--------cCceeeecCccccccCCCCcchHHHHHHHHH
Q 044512 149 TKGGDAEK---DDVVMSLWHDNLKLLLVTYGA-KGCGY-FT--------KKFKGRVPGFSVKTIDTTGAGDAFVGSFLVS 215 (230)
Q Consensus 149 ~~~~~~~~---~~~~~~l~~~g~~~vvvt~g~-~g~~~-~~--------~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~ 215 (230)
+|.+..+. .++++.+++.|++.||||.+. +|... .. .+..+++..++++.. ++|+||+|+|.+++.
T Consensus 164 ~g~~~~~~~~~~~a~~~l~~~g~~~VVITs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~GtGD~fsA~laa~ 242 (308)
T PLN02978 164 TGIRIVTEEDAREACAILHAAGPSKVVITSIDIDGKLLLVGSHRKEKGARPEQFKIVIPKIPAY-FTGTGDLMAALLLGW 242 (308)
T ss_pred hCCCCCCHHHHHHHHHHHHHhCCCEEEEEEecCCCCEEEEEecccccCCCCceEEEEccCCCCC-CCCchHHHHHHHHHH
Confidence 99764432 356678888999999998754 33322 21 124566777777655 589999999998888
Q ss_pred HHcC-CCccccccc
Q 044512 216 VAKD-ANIFNVKFR 228 (230)
Q Consensus 216 l~~g-~~~~~a~~~ 228 (230)
+.+| .++++|.++
T Consensus 243 l~~g~~~l~~A~~~ 256 (308)
T PLN02978 243 SHKYPDNLDKAAEL 256 (308)
T ss_pred HhcCCcCHHHHHHH
Confidence 8888 789888653
No 69
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=99.60 E-value=1.5e-14 Score=128.58 Aligned_cols=148 Identities=12% Similarity=0.078 Sum_probs=107.4
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHC-CCeEEEeCCCCC----CCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDA-GVLLSYDPNVRL----PLWPSQDAARDGIKSIWNHADLIKVSDDEVNF 147 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~d~~~~~----~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~ 147 (230)
+.+.+-++.+ .+ .+....+++..++. +.++++||.... .++ .+...+.+.++++.+|+++||..|+..
T Consensus 310 ~~~aiKiGmL--~s---~e~v~~i~~~l~~~~~~~vVlDPV~~~~sG~~l~--~~~~~~~l~~Llp~adlItPN~~Ea~~ 382 (755)
T PRK09517 310 TVDAVKLGML--GS---ADTVDLVASWLGSHEHGPVVLDPVMVATSGDRLL--DADATEALRRLAVHVDVVTPNIPELAV 382 (755)
T ss_pred CCCEEEECCC--CC---HHHHHHHHHHHHhCCCCCEEEecccccCCCCCCC--CHHHHHHHHHHhCcccCccCCHHHHHH
Confidence 3467767653 22 35556666666664 467999996532 222 223345566799999999999999999
Q ss_pred hcCCC-Ccch---HHHHHHHHhcCccEEEEEecC------CceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHH
Q 044512 148 LTKGG-DAEK---DDVVMSLWHDNLKLLLVTYGA------KGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVA 217 (230)
Q Consensus 148 l~~~~-~~~~---~~~~~~l~~~g~~~vvvt~g~------~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~ 217 (230)
|+|.. ..+. .++++.|...+...||||.|. .++++..++..++++.++++.+|++|+||+|.|+|+++|+
T Consensus 383 L~g~~~~~~~~d~~~aa~~L~~~~g~~VVVkgGh~~~~~~~~~l~~~~~~~~~~~~~~v~~~~t~GaGDtfsaaiaa~La 462 (755)
T PRK09517 383 LCGEAPAITMDEAIAQARGFARTHGTIVIVKGGHLTGDLADNAVVRPDGSVHQVENPRVNTTNSHGTGCSLSAALATLIA 462 (755)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhcCCEEEEcCCcCCCCccceEEEeCCCeEEEEeecccCCCCCcChHHHHHHHHHHHHH
Confidence 99953 2222 245667766444589999984 4666655555678888899999999999999999999999
Q ss_pred cCCCcccccc
Q 044512 218 KDANIFNVKF 227 (230)
Q Consensus 218 ~g~~~~~a~~ 227 (230)
+|+++++|.+
T Consensus 463 ~G~sl~eAv~ 472 (755)
T PRK09517 463 AGESVEKALE 472 (755)
T ss_pred CCCCHHHHHH
Confidence 9999999865
No 70
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=99.59 E-value=4.5e-14 Score=109.49 Aligned_cols=153 Identities=16% Similarity=0.047 Sum_probs=108.6
Q ss_pred ccccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh--CcEEeeCHHHH
Q 044512 68 MGLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNH--ADLIKVSDDEV 145 (230)
Q Consensus 68 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~--~dil~~n~~E~ 145 (230)
.+.++++|++++..- +..+...+.+...++.+++.+.++++||..... ... ..+.+.+++.. +|+++||..|+
T Consensus 44 ~~~l~~~d~vvi~~G-~l~~~~~~~i~~~~~~~~~~~~pvVlDp~~~~~---~~~-~~~~~~~ll~~~~~~ilTPN~~Ea 118 (242)
T cd01170 44 EELAKIAGALVINIG-TLTSEQIEAMLKAGKAANQLGKPVVLDPVGVGA---TSF-RTEVAKELLAEGQPTVIRGNASEI 118 (242)
T ss_pred HHHHHHcCcEEEeCC-CCChHHHHHHHHHHHHHHhcCCCEEEcccccCc---chh-HHHHHHHHHhcCCCeEEcCCHHHH
Confidence 356778898888642 334445566777777788889999999974321 111 11234455554 99999999999
Q ss_pred hhhcCCCCc------------chHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHH
Q 044512 146 NFLTKGGDA------------EKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFL 213 (230)
Q Consensus 146 ~~l~~~~~~------------~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~ 213 (230)
..|+|.+.. +..++++.+.+.+...|++| |.... ++++++.++++..+..+.++.|+||+|.|.+.
T Consensus 119 ~~L~g~~~~~~~~~~~~~~~~~~~~aa~~l~~~~~~~Vllk-G~~d~-l~~~~~~~~~~~~~~~~~~v~GtGdtLa~aiA 196 (242)
T cd01170 119 AALAGLTGLGKGVDSSSSDEEDALELAKALARKYGAVVVVT-GEVDY-ITDGERVVVVKNGHPLLTKITGTGCLLGAVIA 196 (242)
T ss_pred HHHhCCCCCcCcccCCCcchHHHHHHHHHHHHHhCCEEEEE-CCCcE-EEECCEEEEEeCCCccccCCCchHHHHHHHHH
Confidence 999986532 22345677776655578888 55554 55666677777655556667999999999999
Q ss_pred HHHHcCCCcccccc
Q 044512 214 VSVAKDANIFNVKF 227 (230)
Q Consensus 214 ~~l~~g~~~~~a~~ 227 (230)
+.+++|.++.+|+.
T Consensus 197 a~LA~g~~~~~A~~ 210 (242)
T cd01170 197 AFLAVGDDPLEAAV 210 (242)
T ss_pred HHHhCCCCHHHHHH
Confidence 99999999999874
No 71
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=99.56 E-value=7.2e-14 Score=109.56 Aligned_cols=146 Identities=15% Similarity=0.021 Sum_probs=103.2
Q ss_pred ccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhc
Q 044512 70 LIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLT 149 (230)
Q Consensus 70 ~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 149 (230)
.+.+.+++.+++- +... +....+++.+++.+.++++|+........ .... .+++.+++++||..|++.|+
T Consensus 74 ~~~~~d~v~ig~g-l~~~---~~~~~i~~~~~~~~~pvVlDa~~~~~~~~-----~~~~-~~~~~~~iltPn~~E~~~L~ 143 (254)
T cd01171 74 LLERADAVVIGPG-LGRD---EEAAEILEKALAKDKPLVLDADALNLLAD-----EPSL-IKRYGPVVLTPHPGEFARLL 143 (254)
T ss_pred hhccCCEEEEecC-CCCC---HHHHHHHHHHHhcCCCEEEEcHHHHHhhc-----Chhh-hccCCCEEECCCHHHHHHHh
Confidence 4567889988762 3222 56777888888889999999873110000 0000 24567999999999999999
Q ss_pred CCCCcc----hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccc
Q 044512 150 KGGDAE----KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNV 225 (230)
Q Consensus 150 ~~~~~~----~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a 225 (230)
+....+ ..++++.+.+.+. .+|+..|. +.++++++..++++....+..+++|+||+|+|.+.+.+++|+++.+|
T Consensus 144 g~~~~~~~~~~~~~a~~l~~~~~-~~vvlkG~-~~~i~~~~~~~~~~~~~~~~~~~~GaGD~lag~iaa~la~g~~~~eA 221 (254)
T cd01171 144 GALVEEIQADRLAAAREAAAKLG-ATVVLKGA-VTVIADPDGRVYVNPTGNPGLATGGSGDVLAGIIAALLAQGLSPLEA 221 (254)
T ss_pred CCChhhhhhHHHHHHHHHHHHcC-cEEEEcCC-CCEEECCCCcEEEECCCCcccccCchHHHHHHHHHHHHHcCCCHHHH
Confidence 976432 1245677777765 44555674 56666665456677777789999999999988888888899999998
Q ss_pred cc
Q 044512 226 KF 227 (230)
Q Consensus 226 ~~ 227 (230)
++
T Consensus 222 ~~ 223 (254)
T cd01171 222 AA 223 (254)
T ss_pred HH
Confidence 75
No 72
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=99.50 E-value=8.7e-13 Score=101.72 Aligned_cols=155 Identities=23% Similarity=0.166 Sum_probs=112.5
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCC--CeEEEeCC--CCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHH
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAG--VLLSYDPN--VRLPLWPSQDAARDGIKSIWNHADLIKVSDDE 144 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~~--~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 144 (230)
..+..+|.++.+. +.+......+..++...++.+ ..+++||. ....++...+.......++++.+|+++||..|
T Consensus 69 ~~~~~~davltGY--lgs~~qv~~i~~~v~~vk~~~P~~~~l~DPVMGD~gglYV~~~~~~~~~~~lip~AdiiTPN~fE 146 (281)
T COG2240 69 DKLGECDAVLTGY--LGSAEQVRAIAGIVKAVKEANPNALYLCDPVMGDPGGLYVAPEVAEAYRDELLPLADIITPNIFE 146 (281)
T ss_pred ccccccCEEEEcc--CCCHHHHHHHHHHHHHHhccCCCeEEEeCCcccCCCceeeccchHHHHHHhhcchhhEeCCCHHH
Confidence 3567889886653 567777788888888888875 44888994 22344544444455555899999999999999
Q ss_pred HhhhcCCCCcchHH---HHHHHHhcCccEEEEEecCC-----ceEEEecC---ceeeecCccccccCCCCcchHHHHHHH
Q 044512 145 VNFLTKGGDAEKDD---VVMSLWHDNLKLLLVTYGAK-----GCGYFTKK---FKGRVPGFSVKTIDTTGAGDAFVGSFL 213 (230)
Q Consensus 145 ~~~l~~~~~~~~~~---~~~~l~~~g~~~vvvt~g~~-----g~~~~~~~---~~~~~~~~~~~~~dt~GaGDaf~ag~~ 213 (230)
++.|+|.+..+.++ +++.|.+.|+++|+||.-+. |..+.... ..+|+. +.++ .+++|.||.|+|.|+
T Consensus 147 Le~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~-~~v~-~~~~GtGDL~salll 224 (281)
T COG2240 147 LEILTGKPLNTLDDAVKAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHIS-PLVP-FIPNGTGDLFSALLL 224 (281)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhh-hcCC-CCCCCchHHHHHHHH
Confidence 99999998776554 45677778999999996544 33443332 333333 3333 349999999999999
Q ss_pred HHHHcCCCcccccc
Q 044512 214 VSVAKDANIFNVKF 227 (230)
Q Consensus 214 ~~l~~g~~~~~a~~ 227 (230)
+.+++|.+.++|..
T Consensus 225 a~lL~g~~~~~al~ 238 (281)
T COG2240 225 ARLLEGLSLTQALE 238 (281)
T ss_pred HHHHcCCCHHHHHH
Confidence 99999999988753
No 73
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=99.42 E-value=2.4e-12 Score=101.85 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=120.9
Q ss_pred CCC-hhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccc
Q 044512 4 GDD-EFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSI 82 (230)
Q Consensus 4 G~D-~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~ 82 (230)
|+| ..|..++..++..++-...+.......+ .. .+.. -...+... ... ...+++ ...++.++++.+++=
T Consensus 32 Gs~~~~GA~ila~l~~~~~g~~~v~~~~~~~~-~~--~i~~-~~pe~~~~---~~~--~~~~~~-~~~~~~~davvig~G 101 (272)
T TIGR00196 32 GSDDYSGAPLLAALAALRAGAGLVTVAAPENV-IT--LINS-VSPELIVH---RLG--WKVDED-EELLERYDVVVIGPG 101 (272)
T ss_pred CCCCCCcHHHHHHHHHHHhCCCeEEEEEchhh-HH--HHhh-cCCEEEEe---cch--hhHHHH-HhhhccCCEEEEcCC
Confidence 444 4568888999988887666654432111 00 0111 11111111 000 011111 234577899988772
Q ss_pred cccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcch---HHH
Q 044512 83 SLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEK---DDV 159 (230)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~---~~~ 159 (230)
+..+. .+.++++.+++.+.++++|+.. ............++++++||..|+..|+|....+. .++
T Consensus 102 -l~~~~---~~~~l~~~~~~~~~pvVlDa~g--------~~l~~~~~~~~~~~~vItPN~~El~~L~g~~~~~~~~~~~a 169 (272)
T TIGR00196 102 -LGQDP---SFKKAVEEVLELDKPVVLDADA--------LNLLTYDKPKREGEVILTPHPGEFKRLLGLVNEIQGDRLEA 169 (272)
T ss_pred -CCCCH---HHHHHHHHHHhcCCCEEEEhHH--------HHHHhhcccccCCCEEECCCHHHHHHHhCCchhhhhhHHHH
Confidence 33332 2667777888889999999862 11111111013468999999999999999754332 245
Q ss_pred HHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 160 VMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 160 ~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
++.+.+.. ..+|++.|..++++..++..+ +...+.+..+++|+||++.|.+.+.+++|.++.+|+.
T Consensus 170 a~~l~~~~-~~vVv~kG~~~~i~~~~~~~~-~~~~~~~~~~~~GaGD~lag~iaa~la~g~~~~~A~~ 235 (272)
T TIGR00196 170 AQDIAQKL-QAVVVLKGAADVIAAPDGDLW-INKTGNAALAKGGTGDVLAGLIGGLLAQNLDPFDAAC 235 (272)
T ss_pred HHHHHHHh-CCEEEEcCCCCEEEcCCCeEE-EECCCCCccCCCCchHHHHHHHHHHHhCCCCHHHHHH
Confidence 56666654 357778898888766444444 4444567788999999966666666679999998873
No 74
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=99.40 E-value=1.2e-11 Score=98.57 Aligned_cols=152 Identities=14% Similarity=0.089 Sum_probs=98.0
Q ss_pred ccEEEEccccccCchHHHHHHHHHHHHHH-C--CCeEEEeCCCCC---CCCCCHHHH-HHHHHHHhhhCcEEeeCHHHHh
Q 044512 74 AKIFHYGSISLISEPCRSAHMAALKAAKD-A--GVLLSYDPNVRL---PLWPSQDAA-RDGIKSIWNHADLIKVSDDEVN 146 (230)
Q Consensus 74 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~~~d~~~~~---~~~~~~~~~-~~~~~~~l~~~dil~~n~~E~~ 146 (230)
.+++=++. +.+....+.+.++++...+ . ..++++||.-.. ..+...... ......+++++++++||..|++
T Consensus 74 i~aIKiGm--L~s~e~i~~v~~~l~~~~~~~~~~~~vVlDPVl~sssG~~L~~~~~~~~~~~~~Llp~a~viTPN~~Ea~ 151 (321)
T PTZ00493 74 IDVVKLGV--LYSKKIISLVHNYITNMNKKRGKKLLVVFDPVFVSSSGCLLVENLEYIKFALDLICPISCIITPNFYECK 151 (321)
T ss_pred CCEEEECC--cCCHHHHHHHHHHHHHhcccccCCCeEEECCceEECCCCccCCcHHHHHHHHHHhhccCEEECCCHHHHH
Confidence 46676665 3443334445555533311 1 224899995321 111111122 3333569999999999999999
Q ss_pred hhcC-----CC--CcchHHHHHHHHh-cCccEEEEEecCCc-----------e-EEEec---------------C-----
Q 044512 147 FLTK-----GG--DAEKDDVVMSLWH-DNLKLLLVTYGAKG-----------C-GYFTK---------------K----- 186 (230)
Q Consensus 147 ~l~~-----~~--~~~~~~~~~~l~~-~g~~~vvvt~g~~g-----------~-~~~~~---------------~----- 186 (230)
.|.| .. ..+..++++.|.+ .|++.|+||.|... . +++.+ +
T Consensus 152 ~L~g~~~~~~~~~~~~~~~aA~~l~~~~G~~~VliKGGh~~~~~~~~~~~~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~ 231 (321)
T PTZ00493 152 VILEALDCQMDLSKANMTELCKLVTEKLNINACLFKSCNVGENSAEENEVYAVDHLCIRNVGSYPTGEKQQIDAGGVTYL 231 (321)
T ss_pred HHhCCCcccCCCCHHHHHHHHHHHHHhcCCCEEEECcCCCcccccccccccceeEEecCCcccccccccccccccccccc
Confidence 9998 22 1122456777776 69999999987632 1 33321 1
Q ss_pred -ceeeecCccccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 187 -FKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 187 -~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
..+++..+++...++.|+||+|.+++++.|++|+++++|.+
T Consensus 232 ~~~~~~~~~ri~~~~~hGTGc~fASAIAa~LA~G~~l~~Av~ 273 (321)
T PTZ00493 232 YDVYKLRSKRKPGKDIHGTGCTLSTAIACYLAKKHNILQSCI 273 (321)
T ss_pred ceEEEEEecccCCCCCCChHHHHHHHHHHHHHcCCCHHHHHH
Confidence 13456666667778899999999999999999999999865
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=99.36 E-value=2.6e-11 Score=95.34 Aligned_cols=152 Identities=14% Similarity=0.043 Sum_probs=101.8
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCcEEeeCHHHHh
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN--HADLIKVSDDEVN 146 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~ 146 (230)
+..+.++.++++. -...+...+.+..+++.+++.+.|+++||...... . ...+....+++ ++++++||..|+.
T Consensus 50 ~~~~~~~alvi~~-G~l~~~~~~~i~~~~~~a~~~~~pvVlDpv~~~~~-~---~~~~~~~~ll~~~~~~vItPN~~E~~ 124 (263)
T PRK09355 50 EMAKIAGALVINI-GTLTEERIEAMLAAGKIANEAGKPVVLDPVGVGAT-S---YRTEFALELLAEVKPAVIRGNASEIA 124 (263)
T ss_pred HHHHhcCceEEeC-CCCCHHHHHHHHHHHHHHHhcCCCEEECCcccCcc-h---hhHHHHHHHHHhcCCcEecCCHHHHH
Confidence 4556777776644 33444445556777777888899999999753221 1 01222334443 6899999999999
Q ss_pred hhcCCCCc-----------chHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHH
Q 044512 147 FLTKGGDA-----------EKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVS 215 (230)
Q Consensus 147 ~l~~~~~~-----------~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~ 215 (230)
.|++.... +..++++.+..++...|++|.+. -++.+++..+.++.......+.+|+||++.|.+.+.
T Consensus 125 ~L~g~~~~~~~vd~~~~~~~~~~~a~~la~~~~~~VvvkG~~--d~I~~~~~~~~~~~g~~~~~~v~GtGc~L~~~iaa~ 202 (263)
T PRK09355 125 ALAGEAAETKGVDSTDGSADAVEIAKAAAKKYGTVVVVTGEV--DYITDGERVVSVHNGHPLMTKVTGTGCLLSAVVAAF 202 (263)
T ss_pred HHhCCCcccCCcCCCCCHHHHHHHHHHHHHHhCCEEEEECCC--cEEEeCCEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 99986421 22345667777655578888443 344455555666533334566699999999999999
Q ss_pred HHcCCCcccccc
Q 044512 216 VAKDANIFNVKF 227 (230)
Q Consensus 216 l~~g~~~~~a~~ 227 (230)
+++|.++.+|+.
T Consensus 203 lA~g~~~~~A~~ 214 (263)
T PRK09355 203 AAVEKDYLEAAA 214 (263)
T ss_pred HhcCCCHHHHHH
Confidence 999999988864
No 76
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=99.33 E-value=3.7e-11 Score=93.69 Aligned_cols=161 Identities=15% Similarity=0.033 Sum_probs=102.4
Q ss_pred ccccccccCccccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCc
Q 044512 59 MLLKDSELNMGLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN--HAD 136 (230)
Q Consensus 59 ~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~--~~d 136 (230)
|...++++ .+..+.++.+.+..=.+ .....+.+..+++.+++.+.|+++||..... .....+...++++ +++
T Consensus 36 m~~~~~e~-~~~~~~~~al~ik~G~l-~~~~~~~i~~~~~~~~~~~~pvVlDPV~~~~----s~~r~~~~~~Ll~~~~~~ 109 (249)
T TIGR00694 36 MSEAEEEV-AELAKIAGALVINIGTL-DKESIEAMIAAGKSANELGVPVVLDPVGVGA----TKFRTETALELLSEGRFA 109 (249)
T ss_pred hcCCHHHH-HHHHHHcCceEEeCCCC-CHHHHHHHHHHHHHHHhcCCCEEEccccccc----chhHHHHHHHHHhhcCCc
Confidence 33334443 34456667666654323 3334566777777788889999999974322 1111233355665 479
Q ss_pred EEeeCHHHHhhhcCCCC-----------cchHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcc
Q 044512 137 LIKVSDDEVNFLTKGGD-----------AEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAG 205 (230)
Q Consensus 137 il~~n~~E~~~l~~~~~-----------~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaG 205 (230)
+|+||..|+..|+|... .+..++++.+.+++...|++|.+ . -++.++++.+.+..........+|.|
T Consensus 110 vITpN~~E~~~L~g~~~~~~gvd~~~~~~d~~~~a~~la~~~~~~VllkG~-~-D~i~~~~~~~~~~~g~~~~~~~~GtG 187 (249)
T TIGR00694 110 AIRGNAGEIASLAGETGLMKGVDSGEGAADAIRAAQQAAQKYGTVVVITGE-V-DYVSDGTSVYTIHNGTELLGKITGSG 187 (249)
T ss_pred eeCCCHHHHHHHhCCCCCCCCcCCccchHHHHHHHHHHHHHhCCEEEEECC-C-cEEEeCCEEEEECCCChHHhCCccch
Confidence 99999999999998541 11234566676654447777644 2 24555555555443332222358999
Q ss_pred hHHHHHHHHHHHcCCCcccccc
Q 044512 206 DAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 206 Daf~ag~~~~l~~g~~~~~a~~ 227 (230)
|++.+.+.+.+++|.++.+|+.
T Consensus 188 c~LssaIaa~LA~g~~~~~A~~ 209 (249)
T TIGR00694 188 CLLGSVVAAFCAVEEDPLDAAI 209 (249)
T ss_pred HHHHHHHHHHHhcCCCHHHHHH
Confidence 9999999999999999988864
No 77
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=99.07 E-value=4.2e-09 Score=80.07 Aligned_cols=146 Identities=18% Similarity=0.095 Sum_probs=96.9
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCCC--eEEEeCC--CCCCCCCCHHHHHHHHH-HHhhhCcEEeeCHHHH
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGV--LLSYDPN--VRLPLWPSQDAARDGIK-SIWNHADLIKVSDDEV 145 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~d~~--~~~~~~~~~~~~~~~~~-~~l~~~dil~~n~~E~ 145 (230)
+...+.+.. |+ +.+......+..++...++.+. .-++||. ...+++.. ++.....+ .+++.+|+++||..|+
T Consensus 79 ~~~Y~~vLT-GY-~~n~~~l~~i~~iv~~lk~~np~~~wv~DPVmGDnG~lYV~-eelipvYr~~i~~ladiiTPNqFE~ 155 (308)
T KOG2599|consen 79 LNKYDAVLT-GY-LPNVSFLQKIADIVKKLKKKNPNLTWVCDPVMGDNGRLYVP-EELIPVYRDLIIPLADIITPNQFEA 155 (308)
T ss_pred ccccceeee-ec-cCChhHHHHHHHHHHHHHhcCCCeEEEeCccccCCccEecc-HHHHHHHHHhhcchhhhcCCcchhh
Confidence 346677744 43 4555555666666666666554 4567984 34555653 33333334 4445799999999999
Q ss_pred hhhcCCCCcchHH---HHHHHHhcCccEEEEEecCC----ceEE----Eec-CceeeecCccccccCCCCcchHHHHHHH
Q 044512 146 NFLTKGGDAEKDD---VVMSLWHDNLKLLLVTYGAK----GCGY----FTK-KFKGRVPGFSVKTIDTTGAGDAFVGSFL 213 (230)
Q Consensus 146 ~~l~~~~~~~~~~---~~~~l~~~g~~~vvvt~g~~----g~~~----~~~-~~~~~~~~~~~~~~dt~GaGDaf~ag~~ 213 (230)
+.|+|....+.++ +++.|+++|++.||||...- |..+ ... .+.+.+..|++.. -.+|.||.|+|-++
T Consensus 156 EiLtg~~I~t~eda~~a~~~lhq~~v~~vVITS~~~~~~~g~~l~c~gs~~~~~~f~~~ipki~~-~FtGTGDLfsaLLl 234 (308)
T KOG2599|consen 156 EILTGMEIRTEEDAKRAVEKLHQKGVKTVVITSFDLGEFTGETLRCIGSSCGSERFRYLIPKIDG-VFTGTGDLFSALLL 234 (308)
T ss_pred hhhcCCeeccHHHHHHHHHHHHHhCCCEEEEEeeeeCCCCCcEEEEEEeccCCceEEEEecccce-EEecccHHHHHHHH
Confidence 9999999887664 56789999999999996443 3112 222 2455555555332 35899999999998
Q ss_pred HHHHcCC
Q 044512 214 VSVAKDA 220 (230)
Q Consensus 214 ~~l~~g~ 220 (230)
+.+.+-.
T Consensus 235 a~~~~~~ 241 (308)
T KOG2599|consen 235 AWLHESP 241 (308)
T ss_pred HHHhcCC
Confidence 8887653
No 78
>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]
Probab=98.93 E-value=2.1e-08 Score=81.16 Aligned_cols=151 Identities=15% Similarity=0.063 Sum_probs=106.5
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCC---CCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhc
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVR---LPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLT 149 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~ 149 (230)
+++++-.+.+ .++.....+.+.+.. .+-.++++||.-. ......++-..-...++++.+|+++||..|+-.|.
T Consensus 92 ~C~VvKTGML--~~~~I~~vi~q~l~~--~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adiltPNI~Ea~~Ll 167 (523)
T KOG2598|consen 92 KCDVVKTGML--PSPEIVKVIEQSLQK--FNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILTPNIPEAFILL 167 (523)
T ss_pred cccEEeecCc--CchHHHHHHHHHHHh--hcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhCCChHHHHHHH
Confidence 5677777653 444334444444443 2224688888421 11122233445566789999999999999999998
Q ss_pred CC-CC--------cchHHHHHHHHhcCccEEEEEecCCce-----------------EEEecCceeeecCccccccCCCC
Q 044512 150 KG-GD--------AEKDDVVMSLWHDNLKLLLVTYGAKGC-----------------GYFTKKFKGRVPGFSVKTIDTTG 203 (230)
Q Consensus 150 ~~-~~--------~~~~~~~~~l~~~g~~~vvvt~g~~g~-----------------~~~~~~~~~~~~~~~~~~~dt~G 203 (230)
+. .. .+.+..+..++..|++.|+++.|.-.. +++.+.+.+.++.+-+....+.|
T Consensus 168 ~~~~~~~~~i~~v~di~~~~~~ihk~gpk~VlvkGghiP~~~~~~~s~d~~~~~~~DvlydG~~F~~f~~~~~~t~~tHG 247 (523)
T KOG2598|consen 168 KKEKREISKIQSVFDIAKDAAKIHKLGPKNVLVKGGHIPFNKNMMTSKDDSDKYTVDVLYDGKEFYIFKSPYLATKHTHG 247 (523)
T ss_pred hhcccCCcccccHHHHHHHHHHHHhcCcceEEEeCCCcCccccccccCcccCCceEEEEEecceEEEecccccccccccC
Confidence 83 21 122445678889999999999876321 34566678888888889999999
Q ss_pred cchHHHHHHHHHHHcCCCcccccc
Q 044512 204 AGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 204 aGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.|.++.++++.-|++|+++.+|-+
T Consensus 248 tgCtLaSAIASnLA~g~sl~qAv~ 271 (523)
T KOG2598|consen 248 TGCTLASAIASNLARGYSLLQAVQ 271 (523)
T ss_pred ccchHHHHHHHHHhhcCCHHHHHH
Confidence 999999999999999999988743
No 79
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=98.63 E-value=4.1e-06 Score=64.54 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=95.0
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh--hhCcEEeeCHHHHh
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIW--NHADLIKVSDDEVN 146 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l--~~~dil~~n~~E~~ 146 (230)
+..+.++.+.++-= -.++...+.+..+++.+++.++|+++||..... ...-.+...++| .++++|++|..|..
T Consensus 45 e~~~~a~al~iNiG-Tl~~~~~~~m~~A~~~A~~~~~PvVLDPVgvGa----s~~R~~~~~~LL~~~~~~vIrGN~sEI~ 119 (246)
T PF02110_consen 45 EFASIADALVINIG-TLTDERIEAMKKAAKAANELGIPVVLDPVGVGA----SKFRTEFALELLNNYKPTVIRGNASEIA 119 (246)
T ss_dssp HHHHCTSEEEEEST-TSSHHHHHHHHHHHHHHHHTT--EEEE-TTBTT----BHHHHHHHHHHHCHS--SEEEEEHHHHH
T ss_pred HHHHHcCEEEEECC-CCCHhHHHHHHHHHHHHHHcCCCEEEeCcccCC----cHHHHHHHHHHHHhCCCcEEEeCHHHHH
Confidence 34455666655432 244555688889999999999999999975432 222345557788 48999999999999
Q ss_pred hhcCCCCcc-----------hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHH
Q 044512 147 FLTKGGDAE-----------KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVS 215 (230)
Q Consensus 147 ~l~~~~~~~-----------~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~ 215 (230)
.|.|..... ..+.++.+.++--..|++| |+.-. +.++...+.++--..-.-..||.|+...+-+.+.
T Consensus 120 aLag~~~~~kGVDs~~~~~~~~~~a~~lA~k~~~vVvvT-G~~D~-Isdg~~~~~i~nG~~~l~~itGtGC~lgaliaaf 197 (246)
T PF02110_consen 120 ALAGEDSKAKGVDSGDSDEDAIEAAKQLAQKYNCVVVVT-GEVDY-ISDGNRVYRIPNGSPLLSKITGTGCMLGALIAAF 197 (246)
T ss_dssp HHHTCCCCSCSSSSSCGSHHHHHHHHHHHHHTTSEEEEE-SSSEE-EEESSCEEEECSSSGGGGGSTTHHHHHHHHHHHH
T ss_pred HHhCcCCCCCCcCcCCcchHHHHHHHHHHHhcCCEEEEe-cCCcE-EECCCeEEEeCCCChHhcceeccchHHHHHHHHH
Confidence 999865321 1244566665444455555 55433 3455566666654445666799999988877777
Q ss_pred HHcCCCccccc
Q 044512 216 VAKDANIFNVK 226 (230)
Q Consensus 216 l~~g~~~~~a~ 226 (230)
+....++-.||
T Consensus 198 ~av~~d~~~aa 208 (246)
T PF02110_consen 198 LAVAEDPLEAA 208 (246)
T ss_dssp HCCCSSHHHHH
T ss_pred HhccccchHHH
Confidence 76655555544
No 80
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=98.62 E-value=1.8e-07 Score=76.30 Aligned_cols=141 Identities=18% Similarity=0.229 Sum_probs=95.0
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh-hhCcEEeeCHHHHhhhcC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIW-NHADLIKVSDDEVNFLTK 150 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l-~~~dil~~n~~E~~~l~~ 150 (230)
.+++++ ++.++++...+.++++ ++.+..+++|.|..- ....+.+.-++ ..++.++||..|+-....
T Consensus 424 ~~a~~I-----~~DsNiS~~~Ma~il~-ak~~k~~V~fEPTd~-------~k~~K~fk~l~v~~i~~i~PN~~Ell~a~k 490 (614)
T KOG3009|consen 424 LSADFI-----LLDSNISVPVMARILE-AKKHKKQVWFEPTDI-------DKVKKVFKTLLVGAITAISPNANELLKAAK 490 (614)
T ss_pred hcCCEE-----EEcCCCCHHHHHHHHH-hhhccCceEecCCCc-------hhhhhhhhhcceeeEEeeCCCHHHHHHHhh
Confidence 478887 4566778888999998 888899999999742 22334444433 359999999999843322
Q ss_pred CCC--cch------H---HHHH---HHHhcCccEEEEEecCCceEEEecCcee-----eecCccc--cccCCCCcchHHH
Q 044512 151 GGD--AEK------D---DVVM---SLWHDNLKLLLVTYGAKGCGYFTKKFKG-----RVPGFSV--KTIDTTGAGDAFV 209 (230)
Q Consensus 151 ~~~--~~~------~---~~~~---~l~~~g~~~vvvt~g~~g~~~~~~~~~~-----~~~~~~~--~~~dt~GaGDaf~ 209 (230)
... .++ . +..+ .........+|+|..++|+.+...++.. ..+++.+ ++++..||||+|+
T Consensus 491 ~~~v~~nps~~q~~~~~~~~~~~~~~k~~~~~s~~I~tl~~~G~l~~yr~k~g~l~~~s~~p~~~~~n~vsvsgaGdsf~ 570 (614)
T KOG3009|consen 491 LCHVSVNPSVIQTADGVLELIEKEKTKLLLNTSIFIVTLANKGSLVVYRNKLGQLEFQSLPPPLQMNNVVSVSGAGDSFN 570 (614)
T ss_pred cCceeeChhhhccchHHHHHHHHHHHHhhcccceEEEEeccCceEEEecCCCCCcccccCCCcccccceeEeccCCcccc
Confidence 111 000 0 1111 2223456689999999998876654222 2333333 6999999999999
Q ss_pred HHHHHHHHcCCCcccc
Q 044512 210 GSFLVSVAKDANIFNV 225 (230)
Q Consensus 210 ag~~~~l~~g~~~~~a 225 (230)
+||+++++.+.++.+.
T Consensus 571 ~g~i~~l~~~~~v~es 586 (614)
T KOG3009|consen 571 SGVIAGLAHNKTVVES 586 (614)
T ss_pred cceeehhhcCcchHhh
Confidence 9999999999887653
No 81
>PRK10565 putative carbohydrate kinase; Provisional
Probab=98.25 E-value=3.8e-05 Score=65.98 Aligned_cols=140 Identities=14% Similarity=0.063 Sum_probs=86.2
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHH--hhhCcEEeeCHHHHhhh
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSI--WNHADLIKVSDDEVNFL 148 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--l~~~dil~~n~~E~~~l 148 (230)
++.++.+.++.=...++ ....+++.+++.+.|+++|+.- ...+... .....+|+||..|+..|
T Consensus 318 ~~~~~a~viGpGlg~~~----~~~~~~~~~~~~~~P~VLDAda-----------L~ll~~~~~~~~~~VLTPh~gE~~rL 382 (508)
T PRK10565 318 LEWADVVVIGPGLGQQE----WGKKALQKVENFRKPMLWDADA-----------LNLLAINPDKRHNRVITPHPGEAARL 382 (508)
T ss_pred hhcCCEEEEeCCCCCCH----HHHHHHHHHHhcCCCEEEEchH-----------HHHHhhCccccCCeEECCCHHHHHHH
Confidence 45678887765322322 2244456666778899999962 1122110 11257999999999999
Q ss_pred cCCCCcc----hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCCccc
Q 044512 149 TKGGDAE----KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDANIFN 224 (230)
Q Consensus 149 ~~~~~~~----~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~~~~ 224 (230)
++..... ..+.++.+.+..-..||+| |.. .++.+++...++....-...-++|.||.++|.+.+-+++|.++.+
T Consensus 383 ~~~~~~~v~~~~~~~a~~~a~~~~~~vvlK-G~~-~iI~~~~~~~~~~~~G~~~ma~~GsGDvLaGiIaalla~g~~~~~ 460 (508)
T PRK10565 383 LGCSVAEIESDRLLSARRLVKRYGGVVVLK-GAG-TVIAAEPDALAIIDVGNAGMASGGMGDVLSGIIGALLGQKLSPYD 460 (508)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhCCEEEEe-CCC-cEEEcCCceEEEECCCCCCCCCCChHHHHHHHHHHHHHcCCCHHH
Confidence 9854322 1234555555443456664 543 344454333444443444556699999999998888899988887
Q ss_pred ccc
Q 044512 225 VKF 227 (230)
Q Consensus 225 a~~ 227 (230)
|+.
T Consensus 461 Aa~ 463 (508)
T PRK10565 461 AAC 463 (508)
T ss_pred HHH
Confidence 763
No 82
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=98.19 E-value=0.00013 Score=56.02 Aligned_cols=155 Identities=16% Similarity=0.033 Sum_probs=92.4
Q ss_pred ccccccccCccccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCc
Q 044512 59 MLLKDSELNMGLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN--HAD 136 (230)
Q Consensus 59 ~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~--~~d 136 (230)
|...+++. .+..+-++.+.+..=+ .+....+.+..+++.+++.+.|+++||..... .....+...++|. +++
T Consensus 42 Ma~~~eE~-~e~~kia~AL~INIGT-L~~~~~~~m~~A~~~An~~~~PvvLDPVgvgA----t~~R~~~~~~LL~~~~~~ 115 (265)
T COG2145 42 MADAPEEV-EEFAKIADALLINIGT-LSAERIQAMRAAIKAANESGKPVVLDPVGVGA----TKFRTKFALELLAEVKPA 115 (265)
T ss_pred hccCHHHH-HHHHHhccceEEeecc-CChHHHHHHHHHHHHHHhcCCCEEecCccCCc----hHHHHHHHHHHHHhcCCc
Confidence 33344443 2333444444443322 34445688889999999999999999975422 2223444567775 479
Q ss_pred EEeeCHHHHhhhcCCCCcc--------hHH---HHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcc
Q 044512 137 LIKVSDDEVNFLTKGGDAE--------KDD---VVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAG 205 (230)
Q Consensus 137 il~~n~~E~~~l~~~~~~~--------~~~---~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaG 205 (230)
+|.+|..|...|.|..... ..+ +++.+...-. .+++-.|+.- ++.++.+.+.+.-...-.-..||+|
T Consensus 116 ~IrGN~sEI~~Lag~~~~~kGVDa~~~~~~~~~~a~~~A~~~~-~vvvvTG~vD-~Isdg~~~~~i~nG~pll~~ItGtG 193 (265)
T COG2145 116 AIRGNASEIAALAGEAGGGKGVDAGDGAADAIEAAKKAAQKYG-TVVVVTGEVD-YISDGTRVVVIHNGSPLLGKITGTG 193 (265)
T ss_pred EEeccHHHHHHHhcccccccccccccchhhHHHHHHHHHHHhC-cEEEEECCee-EEEcCCeEEEEECCCcHHhhhhccc
Confidence 9999999999998644311 112 2233333222 4444446533 3334555655554444455679999
Q ss_pred hHHHHHHHHHHHcCCC
Q 044512 206 DAFVGSFLVSVAKDAN 221 (230)
Q Consensus 206 Daf~ag~~~~l~~g~~ 221 (230)
+...|...+.+....+
T Consensus 194 Cllgav~aaF~av~~d 209 (265)
T COG2145 194 CLLGAVVAAFLAVEKD 209 (265)
T ss_pred cHHHHHHHHHHhcCCC
Confidence 9887777777766666
No 83
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=97.98 E-value=0.00014 Score=56.50 Aligned_cols=141 Identities=15% Similarity=0.083 Sum_probs=87.6
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHH---HhhhCcEEeeCHHHH
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKS---IWNHADLIKVSDDEV 145 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~---~l~~~dil~~n~~E~ 145 (230)
..++++|++.++.=.-..+ ...++++...+...++++|.. ....+.. .....-|++|+.-|+
T Consensus 63 ~~~~~~~av~iGPGlg~~~----~~~~~~~~~~~~~~p~VlDAD-----------aL~~l~~~~~~~~~~~IlTPH~gE~ 127 (242)
T PF01256_consen 63 ELLEKADAVVIGPGLGRDE----ETEELLEELLESDKPLVLDAD-----------ALNLLAENPKKRNAPVILTPHPGEF 127 (242)
T ss_dssp HHHCH-SEEEE-TT-SSSH----HHHHHHHHHHHHCSTEEEECH-----------HHHCHHHCCCCSSSCEEEE-BHHHH
T ss_pred hhhccCCEEEeecCCCCch----hhHHHHHHHHhhcceEEEehH-----------HHHHHHhccccCCCCEEECCCHHHH
Confidence 4567889998887422332 223344545555678999985 1233333 245677999999999
Q ss_pred hhhcCCCCc---chHHHHHHHHh-cCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcCCC
Q 044512 146 NFLTKGGDA---EKDDVVMSLWH-DNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKDAN 221 (230)
Q Consensus 146 ~~l~~~~~~---~~~~~~~~l~~-~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g~~ 221 (230)
..|++.... +..+.++.+.+ .++ .|++ .|..-.+...+++.+..+. .-.-.-+-|.||.+++-+..-++++.+
T Consensus 128 ~rL~~~~~~~~~~~~~~a~~~a~~~~~-~vvL-KG~~t~I~~p~~~~~~n~~-gn~~la~gGsGDvLaGii~~llaq~~~ 204 (242)
T PF01256_consen 128 ARLLGKSVEIQEDRIEAAREFAKEYGA-VVVL-KGAVTIIASPGGRVYVNPT-GNPGLATGGSGDVLAGIIAGLLAQGYD 204 (242)
T ss_dssp HHHHTTTCHHCCSHHHHHHHHHHHHTS-EEEE-ESTSSEEEEETSEEEEE-----GGGSSTTHHHHHHHHHHHHHHHTSS
T ss_pred HHHhCCcccchhhHHHHHHHHHhhcCc-EEEE-eCCCcEEEecCcceeEeCC-CCCCCCCCCcccHHHHHHHHHHHccCC
Confidence 999997763 23345555554 343 5555 4655554444555544443 345667899999999998888899999
Q ss_pred cccccc
Q 044512 222 IFNVKF 227 (230)
Q Consensus 222 ~~~a~~ 227 (230)
+.+|+.
T Consensus 205 ~~~Aa~ 210 (242)
T PF01256_consen 205 PFEAAC 210 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
No 84
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.0024 Score=49.07 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=92.4
Q ss_pred ccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-h-CcEEeeCHHHHhh
Q 044512 70 LIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-H-ADLIKVSDDEVNF 147 (230)
Q Consensus 70 ~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~-~dil~~n~~E~~~ 147 (230)
.+.+-.++.++.=+-.++..-..+..+++.++.+++|+++|...- |- ..+....++. + .-+++||.-|+..
T Consensus 98 ~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL---~L----v~q~~e~l~~~~~~viLTPNvvEFkR 170 (306)
T KOG3974|consen 98 LLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGL---WL----VEQLPERLIGGYPKVILTPNVVEFKR 170 (306)
T ss_pred HHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCce---Ee----hhhchhhhhccCceeeeCCcHHHHHH
Confidence 567778888887555777777888999999999999999998632 21 1122222443 2 3488999999999
Q ss_pred hcCCC--CcchHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHH
Q 044512 148 LTKGG--DAEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSV 216 (230)
Q Consensus 148 l~~~~--~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l 216 (230)
|++.. ..+....+..|...-....|+-.|+.-.++ +++...++-+..-...-.=|-||..++.+..-+
T Consensus 171 Lcd~~l~~~d~~~~~~~L~~~l~nv~vvqKG~~D~il-s~~~ev~~~s~eGs~kRcGGQGDiLaGsla~fl 240 (306)
T KOG3974|consen 171 LCDAELDKVDSHSQMQHLAAELMNVTVVQKGESDKIL-SPDSEVRVCSTEGSLKRCGGQGDILAGSLATFL 240 (306)
T ss_pred HHHHhhccccchHHHHHHHHHhcCeEEEEecCCceee-CCCCeeEEccCCCCccccCCCcchhhhHHHHHH
Confidence 99873 333334566666544445667677766544 444333444334456677889999988776554
No 85
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=97.38 E-value=0.006 Score=51.43 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=50.2
Q ss_pred ccccEEEEccccccCc-h----H----HHHHHHHHHHHH--HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee
Q 044512 72 KQAKIFHYGSISLISE-P----C----RSAHMAALKAAK--DAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV 140 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~-~----~----~~~~~~~l~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~ 140 (230)
.+.|++.+||+.++.+ . . .+...+.++..+ ..++++-+...+.. +.......+..+++.+|-+-+
T Consensus 221 ~~~D~avlSG~q~i~~~y~dg~~~~~~l~r~~~~i~~L~~~~~~i~iH~E~As~~----~~~ir~~i~~~ilp~vDSlGm 296 (463)
T PRK03979 221 KMVDGAILSGYQGIKEEYSDGKTAEYYLKRAKEDIKLLKKKNKDIKIHVEFASIQ----NREIRKKIITYILPHVDSVGM 296 (463)
T ss_pred cCCCEEEEechhhhhccccccccHHHHHHHHHHHHHHHhhCCCCceEEEEecccc----CHHHHHHHHHhhccccccccC
Confidence 4589999999877655 1 1 222333333343 34678888877532 345556666788999999999
Q ss_pred CHHHHhhhc
Q 044512 141 SDDEVNFLT 149 (230)
Q Consensus 141 n~~E~~~l~ 149 (230)
|+.|+..+.
T Consensus 297 NE~ELa~l~ 305 (463)
T PRK03979 297 DETEIANIL 305 (463)
T ss_pred CHHHHHHHH
Confidence 999999765
No 86
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=97.32 E-value=0.0074 Score=47.92 Aligned_cols=137 Identities=15% Similarity=0.061 Sum_probs=78.2
Q ss_pred ccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHHHhhh
Q 044512 70 LIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HADLIKVSDDEVNFL 148 (230)
Q Consensus 70 ~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~~~l 148 (230)
..+++|.+.++.=.-.++...+...+++.... .++++|...- ........++. .--|++|+.-|+..|
T Consensus 98 ~~~~~~avviGpGlG~~~~~~~~~~~~l~~~~---~p~ViDADaL--------~~la~~~~~~~~~~~VlTPH~gEf~rL 166 (284)
T COG0063 98 LVERADAVVIGPGLGRDAEGQEALKELLSSDL---KPLVLDADAL--------NLLAELPDLLDERKVVLTPHPGEFARL 166 (284)
T ss_pred hhccCCEEEECCCCCCCHHHHHHHHHHHhccC---CCEEEeCcHH--------HHHHhCcccccCCcEEECCCHHHHHHh
Confidence 34678899888533344333344444443322 7999999621 00111122222 226889999999999
Q ss_pred cCCCCcc----hHHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcC
Q 044512 149 TKGGDAE----KDDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219 (230)
Q Consensus 149 ~~~~~~~----~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g 219 (230)
++.+..+ ..++++.+.++....||++ |..-++. +++...++...--.---+=|.||.+++-+.+-|+++
T Consensus 167 ~g~~~~~~~~~r~~~a~~~a~~~~~vvVLK-G~~tvI~-~~~g~~~~n~~G~~~ma~GGtGDvLaGii~alLAq~ 239 (284)
T COG0063 167 LGTEVDEIEVDRLEAARELAAKYGAVVVLK-GAVTVIA-DPDGEVFVNPTGNPGMATGGTGDVLAGIIGALLAQG 239 (284)
T ss_pred cCCcccccccchHHHHHHHHHHcCCEEEEe-CCCCEEE-cCCCcEEEcCCCCHHhccCcchHHHHHHHHHHHhCC
Confidence 9854432 2345666666555466664 5444444 444344444333334456789999887666666666
No 87
>PF04587 ADP_PFK_GK: ADP-specific Phosphofructokinase/Glucokinase conserved region; InterPro: IPR007666 Although ATP is the most common phosphoryl group donor for kinases, certain hyperthermophilic archaea, such as Thermococcus litoralis and Pyrococcus furiosus, utilise unusual ADP-dependent glucokinases (ADPGKs) and phosphofructokinases (ADPPKKs) in their glycolytic pathways [, , ]. ADPGKs and ADPPFKs exhibit significant similarity, and form an ADP-dependent kinase (ADPK) family, which was tentatively named the PFKC family []. A ~460-residue ADPK domain is also found in a bifunctional ADP-dependent gluco/phosphofructo- kinase (ADP-GK/PFK) from Methanocaldococcus jannaschii (Methanococcus jannaschii) as well as in homologous hypothetical proteins present in several eukaryotes []. The whole structure of the ADPK domain can be divided into large and small alpha/beta subdomains. The larger subdomain, which carries the ADP binding site, consists of a twisted 12-stranded beta sheet flanked on both faces by 13 alpha helices and three 3(10) helices, forming an alpha/beta 3-layer sandwich. The smaller subdomain, which covers the active site, forms an alpha/beta two-layer structure containing 5 beta strands and four alpha helices. The ADP molecule is buried in a shallow pocket in the large subdomain. The binding of substrate sugar induces a structural change, the small domain closing to form a complete substrate sugar binding site [, , ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 1GC5_A 1L2L_A 3DRW_B 1U2X_A 1UA4_A.
Probab=97.30 E-value=0.019 Score=48.71 Aligned_cols=76 Identities=11% Similarity=0.189 Sum_probs=46.6
Q ss_pred cccccEEEEccccccCc-----hHH----HHHHHHHHHHH-HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee
Q 044512 71 IKQAKIFHYGSISLISE-----PCR----SAHMAALKAAK-DAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV 140 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~-----~~~----~~~~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~ 140 (230)
..+.|++.+||+.++.+ -.. +.+.+.+...+ ..++++-+...+.. +.+.....+..+++++|-+-+
T Consensus 207 ~~~~d~~vlSGlq~l~~~~~d~~~~~~~l~~~~~~i~~l~~~~~~~iH~E~As~~----d~~l~~~i~~~ilp~vDSlGm 282 (444)
T PF04587_consen 207 AFKPDLAVLSGLQMLDEFYFDGETYEERLKRLKEQIKLLKSNPDIPIHLELASFA----DEELRKEILEKILPHVDSLGM 282 (444)
T ss_dssp HTT-SEEEEE-GGG--TB-TTSTCHHHHHHHHHHHHHHHH-HTT-EEEEE----S----SHHHHHHHHHHHGGGSSEEEE
T ss_pred ccCCCEEEEeccccchhhccchhHHHHHHHHHHHHHHhccCCCCCceEEEecccc----CHHHHHHHHHHhhcccccccc
Confidence 34689999999987663 112 22233333444 57889999887642 345556666789999999999
Q ss_pred CHHHHhhhcC
Q 044512 141 SDDEVNFLTK 150 (230)
Q Consensus 141 n~~E~~~l~~ 150 (230)
|++|+..++.
T Consensus 283 NEqEL~~l~~ 292 (444)
T PF04587_consen 283 NEQELANLLS 292 (444)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999998753
No 88
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=97.15 E-value=0.022 Score=47.88 Aligned_cols=76 Identities=9% Similarity=0.097 Sum_probs=52.7
Q ss_pred ccccccEEEEccccccCch---------HHHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEe
Q 044512 70 LIKQAKIFHYGSISLISEP---------CRSAHMAALKAAKD-AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIK 139 (230)
Q Consensus 70 ~l~~~~~v~~~~~~~~~~~---------~~~~~~~~l~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~ 139 (230)
.-..+|++.+||+..+.+. -.+...+.++..+. .++++-+...+.. +.......+..+++.+|-+-
T Consensus 206 i~~~~d~~vlSG~q~m~~~y~dg~~~~~~~er~~~~i~~L~~~~~i~iH~E~As~~----~~~l~~~i~~~ilp~vDSlG 281 (446)
T TIGR02045 206 IGEPVDGAILSGYQGIKEEYSDGKTAKYYLERAKEDIELLKKNKDLKIHVEFASIQ----NREIRKKVVTNIFPHVDSVG 281 (446)
T ss_pred hhhcccEEEEEchhhhhhhccCCccHhHHHHHHHHHHHHHhhCCCCeEEEEecccc----cHHHHHHHHHhhcccccccc
Confidence 3356899999998776543 12333444444433 5678888877532 34555666678999999999
Q ss_pred eCHHHHhhhc
Q 044512 140 VSDDEVNFLT 149 (230)
Q Consensus 140 ~n~~E~~~l~ 149 (230)
+|+.|+..+.
T Consensus 282 MNE~ELa~ll 291 (446)
T TIGR02045 282 MDEAEIANVL 291 (446)
T ss_pred CCHHHHHHHH
Confidence 9999999887
No 89
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=97.01 E-value=0.042 Score=46.34 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=51.3
Q ss_pred ccccEEEEccccccCch-H-----HHHHHH---HHHHHH--HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee
Q 044512 72 KQAKIFHYGSISLISEP-C-----RSAHMA---ALKAAK--DAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV 140 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~-~-----~~~~~~---~l~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~ 140 (230)
.+.|++.+||+.++.+. + .+.+.+ .+...+ ..++++-+...+.. +.......+..+++.+|-+-+
T Consensus 209 ~~~D~avlSG~q~l~d~y~dg~~~~e~l~~~~~~i~~l~~~~~~i~iH~E~As~~----~~~i~~~v~~~Ilp~VDSlGm 284 (453)
T PRK14039 209 GEMDGALISGFHLLLETYPDGSTYREKLEDSLAQLKWWKSKNEKLRIHAELGHFA----SKEIANSVFLILAGIVDSIGM 284 (453)
T ss_pred cCCCEEEEechhhhhhhcCCcccHHHHHHHHHHHHHHHHhcCCCceEEEEecCcc----cHHHHHHHHHHhhcccccccC
Confidence 37899999998766321 1 233333 333332 23467888877532 355566667789999999999
Q ss_pred CHHHHhhhcCC
Q 044512 141 SDDEVNFLTKG 151 (230)
Q Consensus 141 n~~E~~~l~~~ 151 (230)
|++|+..+...
T Consensus 285 NEqELa~l~~~ 295 (453)
T PRK14039 285 NEDELAMLANL 295 (453)
T ss_pred CHHHHHHHHHH
Confidence 99999988754
No 90
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=96.41 E-value=0.11 Score=43.90 Aligned_cols=77 Identities=12% Similarity=0.180 Sum_probs=51.6
Q ss_pred cccccccEEEEccccccCchHHH-HHH---HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHH
Q 044512 69 GLIKQAKIFHYGSISLISEPCRS-AHM---AALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDE 144 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~-~~~---~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 144 (230)
+...+.|++.+||+.++.+.+.+ .+. +.+...++.++++=+...+.. ....++.+.++++.+|-+-+|+.|
T Consensus 220 ei~~~~Dl~vlSG~q~l~~~~~~~~l~~~~~~l~~l~~~~i~iH~EfAs~~-----d~~~r~~i~~ilp~vDSlGmNE~E 294 (453)
T PRK14038 220 EIAKKAELAIISGLQALTEENYREPFETVREHLKVLNERGIPAHLEFAFTP-----DETVREEILGLLGKFYSVGLNEVE 294 (453)
T ss_pred hhccCCCEEEEEchhhhccccHHHHHHHHHHHHHhcCcCCceEEEEeeccc-----hHHHHHHHHhhCccccccccCHHH
Confidence 34467899999999876654332 222 222233345677777777432 234556666799999999999999
Q ss_pred HhhhcC
Q 044512 145 VNFLTK 150 (230)
Q Consensus 145 ~~~l~~ 150 (230)
+..+..
T Consensus 295 La~ll~ 300 (453)
T PRK14038 295 LASIME 300 (453)
T ss_pred HHHHHH
Confidence 998874
No 91
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=93.60 E-value=1.2 Score=33.96 Aligned_cols=73 Identities=10% Similarity=0.018 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee-----CHHHHhhhcCCCCcchHHHHHHHH
Q 044512 90 RSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV-----SDDEVNFLTKGGDAEKDDVVMSLW 164 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~-----n~~E~~~l~~~~~~~~~~~~~~l~ 164 (230)
.+.+.++++.+++.|+.+.+|.+.... .+.+.++++.+|.+.+ +.+.-..++|......-+.++.+.
T Consensus 53 ~~fl~~l~~~~k~~gi~~~leTnG~~~--------~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~ 124 (213)
T PRK10076 53 AEFATRFLQRLRLWGVSCAIETAGDAP--------ASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLV 124 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC--------HHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467889999999999999999986432 3455666677766654 555566888877655555667777
Q ss_pred hcCccE
Q 044512 165 HDNLKL 170 (230)
Q Consensus 165 ~~g~~~ 170 (230)
+.|...
T Consensus 125 ~~g~~v 130 (213)
T PRK10076 125 SEGVNV 130 (213)
T ss_pred hCCCcE
Confidence 777643
No 92
>cd01938 ADPGK_ADPPFK ADP-dependent glucokinase (ADPGK) and phosphofructokinase (ADPPFK). ADPGK and ADPPFK are proteins that rely on ADP rather than ATP to donate a phosphoryl group. They are found in certain hyperthermophilic archaea and in higher eukaryotes. A functional ADPGK has been characterized in mouse and is assumed to be desirable during ischemia/hypoxia. ADPGK and ADPPFK contain a large and a small domain with the binding site located in a groove between the domains. Partial domain closing is seen when ADP is bound, and further domain closing is observed when glucose is also bound. The oligomerization state apparently varies depending on the species, with some existing as monomers, some as dimers, and some as tetramers.
Probab=89.41 E-value=3.2 Score=35.44 Aligned_cols=73 Identities=8% Similarity=0.162 Sum_probs=48.9
Q ss_pred cccEEEEccccccCchH--HHHHHHHHHHHH------HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHH
Q 044512 73 QAKIFHYGSISLISEPC--RSAHMAALKAAK------DAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDE 144 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~--~~~~~~~l~~~~------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 144 (230)
+.|++.+||+.++.+.. .....+.++.++ +..+++=|...+.. +.....+.+..+++++|-+-+|+.|
T Consensus 205 ~pDl~vlSGlqmm~~~~~~~~~~~~~l~~~~~~l~~l~~~i~iH~E~As~~----d~~l~~~i~~~ilp~VDSlGmNEqE 280 (445)
T cd01938 205 QPDLAVLSGLQMMEGQSFDEGTRKELLERVKSILEILPPLIPIHLELASTV----DEELREEILHEVVPYVDSLGLNEQE 280 (445)
T ss_pred CCCEEEEechhhhcccCCChhhHHHHHHHHHHHHHhccccCcEEEEecccc----cHHHHHHHHHHhcccccccccCHHH
Confidence 38999999998765532 122233333222 12367777776532 3455566677889999999999999
Q ss_pred Hhhhc
Q 044512 145 VNFLT 149 (230)
Q Consensus 145 ~~~l~ 149 (230)
+..+.
T Consensus 281 L~~l~ 285 (445)
T cd01938 281 LANLL 285 (445)
T ss_pred HHHHH
Confidence 99886
No 93
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=17 Score=28.66 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=56.2
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEe-----eCHHHHhh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIK-----VSDDEVNF 147 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~-----~n~~E~~~ 147 (230)
..+.|.++|= ---+..+.+.++++.+++.|.++.+|.+.... .+.+.++++.+|.+. ++++....
T Consensus 83 ~~~gvt~SGG--EP~~q~e~~~~~~~~ake~Gl~~~l~TnG~~~--------~~~~~~l~~~~D~v~~DlK~~~~~~y~~ 152 (260)
T COG1180 83 SGGGVTFSGG--EPTLQAEFALDLLRAAKERGLHVALDTNGFLP--------PEALEELLPLLDAVLLDLKAFDDELYRK 152 (260)
T ss_pred CCCEEEEECC--cchhhHHHHHHHHHHHHHCCCcEEEEcCCCCC--------HHHHHHHHhhcCeEEEeeccCChHHHHH
Confidence 4555555441 11235688999999999999999999986432 233345555556554 34444777
Q ss_pred hcCCCCcchHHHHHHHHhcCcc
Q 044512 148 LTKGGDAEKDDVVMSLWHDNLK 169 (230)
Q Consensus 148 l~~~~~~~~~~~~~~l~~~g~~ 169 (230)
++|......-+.++.+...|+.
T Consensus 153 ~tg~~~~~vl~~~~~l~~~g~~ 174 (260)
T COG1180 153 LTGADNEPVLENLELLADLGVH 174 (260)
T ss_pred HhCCCcHHHHHHHHHHHcCCCe
Confidence 8887775555566777776653
No 94
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=81.24 E-value=22 Score=27.14 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=58.2
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcC
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTK 150 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~ 150 (230)
-..+|++-+.+. .+.+++..+++.+++.|..+.+|.-.. | ++.+..+.+.+ -.+|++..-..-=....|
T Consensus 78 ~aGAd~~tV~g~-----A~~~TI~~~i~~A~~~~~~v~iDl~~~---~-~~~~~~~~l~~--~gvd~~~~H~g~D~q~~G 146 (217)
T COG0269 78 EAGADWVTVLGA-----ADDATIKKAIKVAKEYGKEVQIDLIGV---W-DPEQRAKWLKE--LGVDQVILHRGRDAQAAG 146 (217)
T ss_pred HcCCCEEEEEec-----CCHHHHHHHHHHHHHcCCeEEEEeecC---C-CHHHHHHHHHH--hCCCEEEEEecccHhhcC
Confidence 457899866553 356899999999999999999998543 2 24555555554 356665543331122366
Q ss_pred CCCc-chHHHHHHHHhcCccEEEEEecC
Q 044512 151 GGDA-EKDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 151 ~~~~-~~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
..+. +.-..++++...|. .+-|+.|-
T Consensus 147 ~~~~~~~l~~ik~~~~~g~-~vAVaGGI 173 (217)
T COG0269 147 KSWGEDDLEKIKKLSDLGA-KVAVAGGI 173 (217)
T ss_pred CCccHHHHHHHHHhhccCc-eEEEecCC
Confidence 6663 22234556666664 56666554
No 95
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=78.36 E-value=11 Score=25.72 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=51.2
Q ss_pred CC-CChhHHHHHHHHHHCCCCccceEecCCCc-ceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEc
Q 044512 3 FG-DDEFGHMLVNILKQNNVKTEGVCFDNHAR-TALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYG 80 (230)
Q Consensus 3 vG-~D~~g~~i~~~l~~~gi~~~~i~~~~~~~-t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 80 (230)
|| ....|..+++.|.+ +-+.+.+......+ .+..+-...+ .......+..++.+.+.+.+.|+++++
T Consensus 5 vGAtG~vG~~l~~lL~~-hp~~e~~~~~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 5 VGATGYVGRELLRLLAE-HPDFELVALVSSSRSAGKPLSEVFP----------HPKGFEDLSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp ESTTSHHHHHHHHHHHH-TSTEEEEEEEESTTTTTSBHHHTTG----------GGTTTEEEBEEETSGHHHTTESEEEE-
T ss_pred ECCCCHHHHHHHHHHhc-CCCccEEEeeeeccccCCeeehhcc----------ccccccceeEeecchhHhhcCCEEEec
Confidence 56 78889999999998 55555333322212 2221111100 000011122223334556889998665
Q ss_pred cccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCC
Q 044512 81 SISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLP 116 (230)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 116 (230)
. +.....++...+.+.|+ .++|.+...+
T Consensus 74 ~-------~~~~~~~~~~~~~~~g~-~ViD~s~~~R 101 (121)
T PF01118_consen 74 L-------PHGASKELAPKLLKAGI-KVIDLSGDFR 101 (121)
T ss_dssp S-------CHHHHHHHHHHHHHTTS-EEEESSSTTT
T ss_pred C-------chhHHHHHHHHHhhCCc-EEEeCCHHHh
Confidence 3 33566777777778887 6668886544
No 96
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=78.14 E-value=25 Score=25.91 Aligned_cols=83 Identities=14% Similarity=0.138 Sum_probs=55.6
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhh---hc
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNF---LT 149 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~---l~ 149 (230)
.++++...|..+ +.+.+..+-+..+++|+.++.||.+. .+.-+..+.+.++.+.-.++...++.. -.
T Consensus 22 d~~~I~T~Gs~i----~~~~i~~i~~~~~~rgVIIfTDpD~~------GekIRk~i~~~vp~~khafi~~~~a~~~~~~i 91 (174)
T TIGR00334 22 DVDVIETNGSAL----KDETINLIKKAQKKQGVIILTDPDFP------GEKIRKKIEQHLPGYENCFIPKHLAKPNKKKI 91 (174)
T ss_pred CceEEEECCCcc----CHHHHHHHHHHhhcCCEEEEeCCCCc------hHHHHHHHHHHCCCCeEEeeeHHhcCcCCCCc
Confidence 478888888533 44555555556667888888999853 345677888888888888998888742 23
Q ss_pred CCCCcchHHHHHHHHh
Q 044512 150 KGGDAEKDDVVMSLWH 165 (230)
Q Consensus 150 ~~~~~~~~~~~~~l~~ 165 (230)
|.+..++++..+.|..
T Consensus 92 GVE~As~e~I~~AL~~ 107 (174)
T TIGR00334 92 GVEEASVEAIIAALEN 107 (174)
T ss_pred ccCCCCHHHHHHHHHH
Confidence 5555555554455543
No 97
>PHA00438 hypothetical protein
Probab=76.90 E-value=2.3 Score=26.33 Aligned_cols=17 Identities=29% Similarity=0.679 Sum_probs=15.0
Q ss_pred CCCcchHHHHHHHHHHH
Q 044512 201 TTGAGDAFVGSFLVSVA 217 (230)
Q Consensus 201 t~GaGDaf~ag~~~~l~ 217 (230)
-.|..++|+|||++|+.
T Consensus 46 ~~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 46 QAGYSEAFIAGFLAGLQ 62 (81)
T ss_pred HcCCcHHHHHHHHHHHH
Confidence 37889999999999984
No 98
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=74.68 E-value=4.8 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=25.6
Q ss_pred eeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEE
Q 044512 139 KVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLV 173 (230)
Q Consensus 139 ~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvv 173 (230)
+++.+|+..|+|....+ ..++.|...|+..++-
T Consensus 2 fLT~~El~elTG~k~~~--~Q~~~L~~~Gi~~~~~ 34 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPS--KQIRWLRRNGIPFVVR 34 (47)
T ss_pred CCCHHHHHHHHCCCCHH--HHHHHHHHCCCeeEEC
Confidence 56889999999988653 4778899899866543
No 99
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=73.49 E-value=3 Score=28.17 Aligned_cols=93 Identities=16% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCcc-ccccccEEEEcc
Q 044512 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMG-LIKQAKIFHYGS 81 (230)
Q Consensus 3 vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~v~~~~ 81 (230)
.|+.+.+-++...|++.|+.+-.+...++..... . ...++.+..-.......+++.+.+-.- .-+.++.+| .|
T Consensus 8 anrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~~----~-~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~-pG 81 (110)
T PF00289_consen 8 ANRGEIAVRIIRALRELGIETVAVNSNPDTVSTH----V-DMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIH-PG 81 (110)
T ss_dssp SS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGHH----H-HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEE-ST
T ss_pred ECCCHHHHHHHHHHHHhCCcceeccCchhccccc----c-cccccceecCcchhhhhhccHHHHhhHhhhhcCcccc-cc
Confidence 4777889999999999999998777655532221 1 113344443222333444554444221 123556554 44
Q ss_pred ccccCchHHHHHHHHHHHHHHCCCe
Q 044512 82 ISLISEPCRSAHMAALKAAKDAGVL 106 (230)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~ 106 (230)
+...++. .++.+.+.+.|+.
T Consensus 82 yg~lse~-----~~fa~~~~~~gi~ 101 (110)
T PF00289_consen 82 YGFLSEN-----AEFAEACEDAGII 101 (110)
T ss_dssp SSTTTTH-----HHHHHHHHHTT-E
T ss_pred cchhHHH-----HHHHHHHHHCCCE
Confidence 4444332 3444455566653
No 100
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=72.74 E-value=3.3 Score=25.62 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=15.5
Q ss_pred CCCCcchHHHHHHHHHHH
Q 044512 200 DTTGAGDAFVGSFLVSVA 217 (230)
Q Consensus 200 dt~GaGDaf~ag~~~~l~ 217 (230)
...|..++|++||+.|+.
T Consensus 45 r~~G~SE~~I~Gfl~Gl~ 62 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQ 62 (77)
T ss_pred HHccccHHHHHHHHHHHH
Confidence 346999999999999985
No 101
>PRK15452 putative protease; Provisional
Probab=72.60 E-value=54 Score=28.22 Aligned_cols=104 Identities=12% Similarity=0.047 Sum_probs=56.7
Q ss_pred ccccccEEEEccccc-----cCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCHH
Q 044512 70 LIKQAKIFHYGSISL-----ISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HADLIKVSDD 143 (230)
Q Consensus 70 ~l~~~~~v~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~ 143 (230)
.-..+|.||+++-.+ ..+++.+.+.++++.++++|.++.+-...... -..-....+.+..+.. .+|-+++..-
T Consensus 20 i~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~-e~el~~~~~~l~~l~~~gvDgvIV~d~ 98 (443)
T PRK15452 20 FAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPH-NAKLKTFIRDLEPVIAMKPDALIMSDP 98 (443)
T ss_pred HHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCC-HHHHHHHHHHHHHHHhCCCCEEEEcCH
Confidence 345889999976322 13455677899999999999998876542111 0011123333444444 4786665544
Q ss_pred HHhhhcCCC--C----------cchHHHHHHHHhcCccEEEEE
Q 044512 144 EVNFLTKGG--D----------AEKDDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 144 E~~~l~~~~--~----------~~~~~~~~~l~~~g~~~vvvt 174 (230)
..-.+.... . ..-..+++.+.+.|+..+++.
T Consensus 99 G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLS 141 (443)
T PRK15452 99 GLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILS 141 (443)
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEEC
Confidence 433332221 1 001235556666666666554
No 102
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=68.80 E-value=66 Score=26.66 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=64.3
Q ss_pred ccccEEEEccc--cc---cCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHHH
Q 044512 72 KQAKIFHYGSI--SL---ISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HADLIKVSDDEV 145 (230)
Q Consensus 72 ~~~~~v~~~~~--~~---~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~ 145 (230)
..+|.||++.- .+ ..+++.+.+.++++.++++|.++.+-.+.....- .-+...+.+..+.. .+|-+++++--+
T Consensus 25 ~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~-~~~~~~~~l~~l~e~GvDaviv~Dpg~ 103 (347)
T COG0826 25 AGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHND-ELETLERYLDRLVELGVDAVIVADPGL 103 (347)
T ss_pred cCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccc-hhhHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 46899999853 11 2357788899999999999987766544221100 12224566666665 799999998877
Q ss_pred hhhcCCCCcc------------hHHHHHHHHhcCccEEEEE
Q 044512 146 NFLTKGGDAE------------KDDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 146 ~~l~~~~~~~------------~~~~~~~l~~~g~~~vvvt 174 (230)
-.+.....++ -...++.+.+.|.+.+|+.
T Consensus 104 i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~ 144 (347)
T COG0826 104 IMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLP 144 (347)
T ss_pred HHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeC
Confidence 7666533211 1234556666676666654
No 103
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=68.39 E-value=65 Score=26.38 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=49.8
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCC--cceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccc
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHA--RTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSI 82 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~--~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~ 82 (230)
+...|+.+++.|++.++....+...... ..+..+.+ .|+. +.-+++....+++.|++++++
T Consensus 11 Tg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f---~g~~-------------~~V~~l~~~~f~~vDia~fag- 73 (322)
T PRK06901 11 EFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRF---NNKA-------------VEQIAPEEVEWADFNYVFFAG- 73 (322)
T ss_pred CcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEE---CCEE-------------EEEEECCccCcccCCEEEEcC-
Confidence 3568999999999999998855543331 12222211 1221 222333333457788875533
Q ss_pred cccCchHHHHHHHHHHHHHHCCCeEEEeCCC
Q 044512 83 SLISEPCRSAHMAALKAAKDAGVLLSYDPNV 113 (230)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~ 113 (230)
.+...++...+.+.|..++ |-++
T Consensus 74 -------~~~s~~~ap~a~~aG~~VI-DnSs 96 (322)
T PRK06901 74 -------KMAQAEHLAQAAEAGCIVI-DLYG 96 (322)
T ss_pred -------HHHHHHHHHHHHHCCCEEE-ECCh
Confidence 2566777778888886555 6654
No 104
>KOG4184 consensus Predicted sugar kinase [Carbohydrate transport and metabolism; General function prediction only]
Probab=66.79 E-value=12 Score=30.70 Aligned_cols=74 Identities=12% Similarity=0.240 Sum_probs=48.2
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHH------CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHh
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKD------AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVN 146 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~ 146 (230)
+.|++.++|+.+..-.+.+.-++-+...++ .|+++=+...+.. +.....+.+..+|+++|=+-+|+.|+.
T Consensus 238 qPdLvVvsGlhmme~qske~r~~rl~~V~r~L~~iP~gip~HlElaS~~----~~~l~~~i~h~VlPyVdSLGlNEQEL~ 313 (478)
T KOG4184|consen 238 QPDLVVVSGLHMMEMQSKEEREARLQQVVRSLSDIPTGIPVHLELASMT----NRELMSSIVHQVLPYVDSLGLNEQELL 313 (478)
T ss_pred CCCEEEEechhHHhhhhHHHHHHHHHHHHHHHhcCCCCCchhhhHhHHH----HHHHHHHHHHHhhhhccccCCCHHHHH
Confidence 679999999876655554433333333332 4566666665321 133345556788999999999999998
Q ss_pred hhcC
Q 044512 147 FLTK 150 (230)
Q Consensus 147 ~l~~ 150 (230)
.|..
T Consensus 314 fL~q 317 (478)
T KOG4184|consen 314 FLTQ 317 (478)
T ss_pred HHHH
Confidence 8763
No 105
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=64.84 E-value=75 Score=27.17 Aligned_cols=75 Identities=11% Similarity=-0.043 Sum_probs=43.8
Q ss_pred cccccccEEEEccccccCc-hHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHh
Q 044512 69 GLIKQAKIFHYGSISLISE-PCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVN 146 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~ 146 (230)
..++++|++..+|=.+..+ .+...... +..++-.|.|+++=+..-.++- ....+.....+++++|.++.=++.-.
T Consensus 113 ~~l~~aDlvI~gGG~lfqD~y~~~~~~y-~l~A~l~gkpv~l~gqsiGPf~--~~~~r~l~r~vl~~~~~ItvRD~~S~ 188 (426)
T PRK10017 113 RLLSGYDAIIQVGGSFFVDLYGVPQFEH-ALCAFMAKKPLYMIGHSVGPFQ--DEQFNQLANYVFGHCDALILRESVSL 188 (426)
T ss_pred HHHHhCCEEEECCCCccccCcccHHHHH-HHHHHHcCCCEEEECCcCCCcC--CHHHHHHHHHHHhcCCEEEEccHHHH
Confidence 4678999877766444322 12112222 2345667888877444333322 23456677888999999998655433
No 106
>PRK15447 putative protease; Provisional
Probab=62.74 E-value=81 Score=25.49 Aligned_cols=99 Identities=8% Similarity=-0.074 Sum_probs=57.3
Q ss_pred ccccEEEEccccc--cCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCc-EEeeCHHHHhh
Q 044512 72 KQAKIFHYGSISL--ISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HAD-LIKVSDDEVNF 147 (230)
Q Consensus 72 ~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~d-il~~n~~E~~~ 147 (230)
+.+|.||++.-.. ..++..+.+.++++.+++.|.++.+-...-.. . +...+.+.+++. .+| +++-|..++..
T Consensus 27 ~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~-~---~~e~~~l~~~l~~~~~~v~v~d~g~l~~ 102 (301)
T PRK15447 27 SPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVE-A---PSELKELRRLVENGEFLVEANDLGAVRL 102 (301)
T ss_pred CCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccccc-C---HHHHHHHHHHHhcCCCEEEEeCHHHHHH
Confidence 3789999985321 23578899999999999999998884432110 0 112344455554 345 44556666665
Q ss_pred hc--CCCCc-------chHHHHHHHHhcCccEEEEE
Q 044512 148 LT--KGGDA-------EKDDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 148 l~--~~~~~-------~~~~~~~~l~~~g~~~vvvt 174 (230)
+- +.+.. .-..+++.+.+.|...+++.
T Consensus 103 ~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls 138 (301)
T PRK15447 103 LAERGLPFVAGPALNCYNAATLALLARLGATRWCMP 138 (301)
T ss_pred HHhcCCCEEEecccccCCHHHHHHHHHcCCcEEEEC
Confidence 54 22210 01235555666666655544
No 107
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=58.54 E-value=63 Score=24.73 Aligned_cols=131 Identities=20% Similarity=0.127 Sum_probs=64.0
Q ss_pred CCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccc
Q 044512 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSI 82 (230)
Q Consensus 3 vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~ 82 (230)
+||+...+.+++.|++.+.+...+..... +..... .... ...... ...........+....+++.+.++|=
T Consensus 2 ~GD~~i~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~vii~GG 72 (286)
T PF04230_consen 2 IGDDLILEALLKLLKKHGPDAEIIIFSPD-PDEFSK-YYKN-KSIFNI------DLSKLWRKRRRKSKIKNADDVIIGGG 72 (286)
T ss_pred chHHHHHHHHHHHHHhcCCceEEEEeCCC-hHHHHH-Hhcc-cccchh------hhhhhhhhhhcccccccCCeEEEECC
Confidence 68999999999999999988775544332 111100 0000 000000 00000000000000034454444442
Q ss_pred -----cccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHH
Q 044512 83 -----SLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDE 144 (230)
Q Consensus 83 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 144 (230)
........-........++..+.|+++=+....... .......+..++++++++.+=+..
T Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~g~g~gp~~--~~~~~~~~~~~l~~~~~i~vRD~~ 137 (286)
T PF04230_consen 73 GGSDNNFIDLWSLPIFLRWLFLAKKLGKPVIILGQGIGPFR--SEEFKKLLRRILSKADYISVRDEY 137 (286)
T ss_pred cccccCCCcchhhHHHHHHHHHHHhcCCCeEEECceECccC--CHHHHHHHHHHHhCCCEEEECCHH
Confidence 011111000235556677788888776554332222 344567788899999998875554
No 108
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=57.85 E-value=96 Score=24.75 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee-----CHHHHhhhcCCCCcchHHHHHHHH
Q 044512 90 RSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV-----SDDEVNFLTKGGDAEKDDVVMSLW 164 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~-----n~~E~~~l~~~~~~~~~~~~~~l~ 164 (230)
.+.+.++++.+++.|..+.++.+... . .+.+.++++.+|++.+ +.+....+.|......-+.++.|.
T Consensus 140 ~~~l~~l~~~~k~~g~~~~i~TnG~~---~-----~~~~~~ll~~~d~~~isl~~~~~~~~~~~~g~~~~~vl~~i~~l~ 211 (295)
T TIGR02494 140 PEFALALLQACHERGIHTAVETSGFT---P-----WETIEKVLPYVDLFLFDIKHLDDERHKEVTGVDNEPILENLEALA 211 (295)
T ss_pred HHHHHHHHHHHHHcCCcEeeeCCCCC---C-----HHHHHHHHhhCCEEEEeeccCChHHHHHHhCCChHHHHHHHHHHH
Confidence 35556888899999988888776431 1 2445566666776543 444445565654332234456666
Q ss_pred hcCccEEE
Q 044512 165 HDNLKLLL 172 (230)
Q Consensus 165 ~~g~~~vv 172 (230)
+.+.+..|
T Consensus 212 ~~~~~~~i 219 (295)
T TIGR02494 212 AAGKNVVI 219 (295)
T ss_pred hCCCcEEE
Confidence 66654433
No 109
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=56.22 E-value=93 Score=24.11 Aligned_cols=102 Identities=14% Similarity=0.168 Sum_probs=63.8
Q ss_pred cccccccEEEEccccc--cCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh----hCc---EEe
Q 044512 69 GLIKQAKIFHYGSISL--ISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN----HAD---LIK 139 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~----~~d---il~ 139 (230)
..+++.+++.++-+.+ ..+.-.+....-++.|++.++|+++..-.+.+ ......+.+++. ..+ +=.
T Consensus 90 ~~l~~e~VvAiGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~nK-----~e~t~~ildi~~~~~l~~~lvvIDH 164 (254)
T COG1099 90 ELLSNEDVVAIGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRNK-----KEATSKILDILIESGLKPSLVVIDH 164 (254)
T ss_pred hhcccCCeeEeeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCcc-----hhHHHHHHHHHHHcCCChhheehhc
Confidence 4667888988887654 23334466777888999999999987644322 112222233332 122 223
Q ss_pred eCHHHHhhhcCCCC----------cchHHHHHHHHhcCccEEEEEe
Q 044512 140 VSDDEVNFLTKGGD----------AEKDDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 140 ~n~~E~~~l~~~~~----------~~~~~~~~~l~~~g~~~vvvt~ 175 (230)
.|.+-...+.++.. .+.+++++.+.+.|...+++..
T Consensus 165 ~N~etv~~vld~e~~vGlTvqPgKlt~~eAveIV~ey~~~r~ilnS 210 (254)
T COG1099 165 VNEETVDEVLDEEFYVGLTVQPGKLTVEEAVEIVREYGAERIILNS 210 (254)
T ss_pred ccHHHHHHHHhccceEEEEecCCcCCHHHHHHHHHHhCcceEEEec
Confidence 77777776665442 2346788889999988877764
No 110
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.54 E-value=28 Score=22.61 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=30.1
Q ss_pred ccccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCC
Q 044512 68 MGLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPN 112 (230)
Q Consensus 68 ~~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~ 112 (230)
+..+.++|+|.+ +.+-++...+..+-+.|++.++|+++--+
T Consensus 43 ~~~i~~aD~VIv----~t~~vsH~~~~~vk~~akk~~ip~~~~~~ 83 (97)
T PF10087_consen 43 PSKIKKADLVIV----FTDYVSHNAMWKVKKAAKKYGIPIIYSRS 83 (97)
T ss_pred HHhcCCCCEEEE----EeCCcChHHHHHHHHHHHHcCCcEEEECC
Confidence 345688888744 34555667888888899999999987653
No 111
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=54.74 E-value=59 Score=21.35 Aligned_cols=62 Identities=8% Similarity=0.099 Sum_probs=36.2
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCC---CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAG---VLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV 140 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~ 140 (230)
.+++|++.+....+......+. ...+..+++.+ .++++ .+... +...+.+.+..+.+|++++
T Consensus 34 ~e~AD~iiiNTC~V~~~Ae~k~-~~~i~~l~~~~~~~~~ivv-~GC~a------q~~~~~l~~~~p~vd~v~G 98 (98)
T PF00919_consen 34 PEEADVIIINTCTVRESAEQKS-RNRIRKLKKLKKPGAKIVV-TGCMA------QRYGEELKKEFPEVDLVVG 98 (98)
T ss_pred cccCCEEEEEcCCCCcHHHHHH-HHHHHHHHHhcCCCCEEEE-EeCcc------ccChHHHHhhCCCeEEEeC
Confidence 3688999888866665544444 44444444433 45554 33221 2235677788888888763
No 112
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=53.92 E-value=47 Score=21.98 Aligned_cols=47 Identities=13% Similarity=-0.046 Sum_probs=29.8
Q ss_pred ChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 6 DEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 6 D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
...=+.+.+.|++.|+.....-.......+..+.+.|++|.+..+.+
T Consensus 71 ~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 117 (121)
T cd07266 71 EEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYA 117 (121)
T ss_pred HHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEe
Confidence 34456788999999998653211111122356677889999887654
No 113
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=53.80 E-value=13 Score=23.52 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEE
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTL 41 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~ 41 (230)
.|+.|+.+.+.|+..|.+- +. +.++|.++.+.
T Consensus 14 lDPqG~ai~~al~~lG~~~--v~---~Vr~GK~~~l~ 45 (80)
T PF02700_consen 14 LDPQGEAIKRALHRLGYDG--VK---DVRVGKYIELE 45 (80)
T ss_dssp --HHHHHHHHHHHHTT-TT--EE---EEEEEEEEEEE
T ss_pred cCcHHHHHHHHHHHcCCcc--cC---cEEEEEEEEEE
Confidence 4899999999999999873 22 23566666543
No 114
>PF07283 TrbH: Conjugal transfer protein TrbH; InterPro: IPR010837 This entry represents TrbH, a bacterial conjugal transfer protein approximately 150 residues long. TrbH contains a putative membrane lipoprotein lipid attachment site [].
Probab=53.09 E-value=45 Score=22.97 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHHHCCCCccce
Q 044512 4 GDDEFGHMLVNILKQNNVKTEGV 26 (230)
Q Consensus 4 G~D~~g~~i~~~l~~~gi~~~~i 26 (230)
..|++|..+.+.||+.|--+.-.
T Consensus 33 ~~d~Fg~aL~~~LR~~GYaV~e~ 55 (121)
T PF07283_consen 33 DPDPFGQALENALRAKGYAVIED 55 (121)
T ss_pred CCChHHHHHHHHHHhcCcEEEec
Confidence 46899999999999999876533
No 115
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=53.07 E-value=42 Score=22.32 Aligned_cols=44 Identities=11% Similarity=-0.022 Sum_probs=28.6
Q ss_pred HHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 9 GHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
=+.+.+.|++.|+.............+..+.+.|++|....+..
T Consensus 75 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 118 (122)
T cd07265 75 LEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYA 118 (122)
T ss_pred HHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEE
Confidence 36688999999998542211112223566778889999886654
No 116
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=52.86 E-value=30 Score=24.66 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=30.3
Q ss_pred CccccccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCC
Q 044512 67 NMGLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPN 112 (230)
Q Consensus 67 ~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~ 112 (230)
....+.++|++.++|-++.++ ++.++++.+++....+++-|+
T Consensus 56 ~~~~l~~aD~viiTGsTlvN~----Ti~~iL~~~~~~~~vil~GpS 97 (147)
T PF04016_consen 56 AEEILPWADVVIITGSTLVNG----TIDDILELARNAREVILYGPS 97 (147)
T ss_dssp HHHHGGG-SEEEEECHHCCTT----THHHHHHHTTTSSEEEEESCC
T ss_pred HHHHHccCCEEEEEeeeeecC----CHHHHHHhCccCCeEEEEecC
Confidence 356889999999999877774 567778777754445667776
No 117
>COG4809 Archaeal ADP-dependent phosphofructokinase/glucokinase [Carbohydrate transport and metabolism]
Probab=52.81 E-value=1.4e+02 Score=25.22 Aligned_cols=78 Identities=9% Similarity=0.054 Sum_probs=50.9
Q ss_pred cccccccEEEEccccccC-----chH----HHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEE
Q 044512 69 GLIKQAKIFHYGSISLIS-----EPC----RSAHMAALKAAKD-AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLI 138 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~-----~~~----~~~~~~~l~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil 138 (230)
+.....|...+||+.... +.+ .+...+-++..++ .++++=+.+.+-+ +.......+..+++.++=+
T Consensus 221 ~i~~~vDgaiiSGyq~l~eey~dg~t~~~yle~s~e~i~~lk~~~~irvHlEfas~~----d~~irk~i~~~il~~v~Sv 296 (466)
T COG4809 221 EIAKEVDGAIISGYQGLKEEYSDGSTYKYYLERSREDIKALKDRENIRVHLEFASIQ----DRKIRKEILTNILSIVYSV 296 (466)
T ss_pred HHhhhcceeeeechhhhhhhcCCCCcHHHHHHHHHHHHHHHhccccceEEEEecccc----cHHHHHHHHHHHHhhhhhc
Confidence 345678999999986522 221 1233344455555 5677777776532 2444566667799999999
Q ss_pred eeCHHHHhhhcC
Q 044512 139 KVSDDEVNFLTK 150 (230)
Q Consensus 139 ~~n~~E~~~l~~ 150 (230)
-+|+.|+..+..
T Consensus 297 GldE~ElA~vl~ 308 (466)
T COG4809 297 GLDEVELANVLN 308 (466)
T ss_pred CCCHHHHHHHHH
Confidence 999999987754
No 118
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=48.91 E-value=1.6e+02 Score=24.68 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=51.0
Q ss_pred CChhHHHHHHHHH-HCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCc-cccccccEEEEccc
Q 044512 5 DDEFGHMLVNILK-QNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNM-GLIKQAKIFHYGSI 82 (230)
Q Consensus 5 ~D~~g~~i~~~l~-~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~v~~~~~ 82 (230)
+...|+.+++.|. +.+++...+..-+..+.+-..+.. .++.. ...+... ..+.+.|+++++.
T Consensus 9 TG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f--~~~~~-------------~v~~~~~~~~~~~vDivffa~- 72 (366)
T TIGR01745 9 RGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSF--GGTTG-------------TLQDAFDIDALKALDIIITCQ- 72 (366)
T ss_pred cCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCC--CCCcc-------------eEEcCcccccccCCCEEEEcC-
Confidence 3568999999888 778875544443332332222211 12111 1112211 2346788886643
Q ss_pred cccCchHHHHHHHHHHHHHHCCCe-EEEeCCCCCC
Q 044512 83 SLISEPCRSAHMAALKAAKDAGVL-LSYDPNVRLP 116 (230)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~~~~~~ 116 (230)
..+...++...+.+.|++ +++|.++.-+
T Consensus 73 ------g~~~s~~~~p~~~~aG~~~~VIDnSSa~R 101 (366)
T TIGR01745 73 ------GGDYTNEIYPKLRESGWQGYWIDAASSLR 101 (366)
T ss_pred ------CHHHHHHHHHHHHhCCCCeEEEECChhhh
Confidence 225667788888899974 7788875433
No 119
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=48.56 E-value=63 Score=23.31 Aligned_cols=90 Identities=16% Similarity=0.061 Sum_probs=52.8
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccccc
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSISL 84 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~ 84 (230)
+...|..+.+.|.+.|.++..+.+.+. +... ..+ -.++.. .. .+++.+ ...++++|.++...-..
T Consensus 7 tG~vG~~l~~~L~~~~~~V~~~~R~~~-~~~~------~~~-~~~~~~---d~---~d~~~~-~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 7 TGFVGRALAKQLLRRGHEVTALVRSPS-KAED------SPG-VEIIQG---DL---FDPDSV-KAALKGADAVIHAAGPP 71 (183)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESSGG-GHHH------CTT-EEEEES---CT---TCHHHH-HHHHTTSSEEEECCHST
T ss_pred CChHHHHHHHHHHHCCCEEEEEecCch-hccc------ccc-ccccee---ee---hhhhhh-hhhhhhcchhhhhhhhh
Confidence 688999999999999988776654433 2111 112 222211 00 112222 34667899886654211
Q ss_pred cCchHHHHHHHHHHHHHHCCCeEEEeC
Q 044512 85 ISEPCRSAHMAALKAAKDAGVLLSYDP 111 (230)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~d~ 111 (230)
.. ..+.+..+++.+++.+.+.++-.
T Consensus 72 ~~--~~~~~~~~~~a~~~~~~~~~v~~ 96 (183)
T PF13460_consen 72 PK--DVDAAKNIIEAAKKAGVKRVVYL 96 (183)
T ss_dssp TT--HHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cc--cccccccccccccccccccceee
Confidence 22 36777888888888887655433
No 120
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=47.52 E-value=68 Score=21.66 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCccEEEEEecCCceEEEecCceeeec
Q 044512 157 DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVP 192 (230)
Q Consensus 157 ~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~ 192 (230)
-++++.++++|++.+.+|..+..-+...-+....++
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~ 99 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLP 99 (128)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEECC
Confidence 457788888999999999877655444333333333
No 121
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=45.25 E-value=19 Score=29.90 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=23.8
Q ss_pred EEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCC----CCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHH
Q 044512 77 FHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNV----RLPLWPSQDAARDGIKSIWN-HADLIKVSDDE 144 (230)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E 144 (230)
||.|.+.+.+-...-...++.+.++++++|++.|.++ +..-+. -.....+.+.++ .+|+++.+-+-
T Consensus 143 Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~g--l~~Ep~v~~~~~~GaDlV~fSGdK 213 (367)
T PF03841_consen 143 VHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYG--LPDEPTVQEYLAAGADLVTFSGDK 213 (367)
T ss_dssp ------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------------CCCCT-SEEEEETTS
T ss_pred ccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCccccc--CccccHHHHHhhcCCCEEEEECCC
Confidence 4445544332122335677888899999999999985 000000 001344555565 59999887653
No 122
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=44.52 E-value=1.5e+02 Score=22.94 Aligned_cols=74 Identities=16% Similarity=0.095 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHH-----HHhhhcCCCCcchHHHHHHHHh
Q 044512 91 SAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDD-----EVNFLTKGGDAEKDDVVMSLWH 165 (230)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~-----E~~~l~~~~~~~~~~~~~~l~~ 165 (230)
+.+.++++.+++.|..+.++.+.....+ .+.+..+++.+|.+.++.+ ....+.|......-+.++.+.+
T Consensus 86 ~~~~~l~~~~k~~g~~i~l~TNG~~~~~------~~~~~~ll~~~d~v~islk~~~~e~~~~~~g~~~~~~l~~i~~l~~ 159 (246)
T PRK11145 86 EFVRDWFRACKKEGIHTCLDTNGFVRRY------DPVIDELLDVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFARYLAK 159 (246)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCcc------hHHHHHHHHhCCEEEECCCcCChhhcccccCCChHHHHHHHHHHHh
Confidence 5566888889999998888876432111 2455566667776655443 3344545433222223455666
Q ss_pred cCccE
Q 044512 166 DNLKL 170 (230)
Q Consensus 166 ~g~~~ 170 (230)
.|.+.
T Consensus 160 ~g~~v 164 (246)
T PRK11145 160 RNQKT 164 (246)
T ss_pred CCCcE
Confidence 66543
No 123
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=44.41 E-value=1.1e+02 Score=24.06 Aligned_cols=99 Identities=17% Similarity=0.171 Sum_probs=59.7
Q ss_pred ccccccccEEEEccccccC-------------chHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh
Q 044512 68 MGLIKQAKIFHYGSISLIS-------------EPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNH 134 (230)
Q Consensus 68 ~~~l~~~~~v~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~ 134 (230)
.+.++++++++..|+.+.- -...+....+++.+.+.+.++++=-+-.. ..+++.+.+....+.
T Consensus 59 ~~~i~~A~li~pDG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp~----V~~~a~~~l~~~~p~ 134 (253)
T COG1922 59 REILNQADLILPDGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKPG----VAEQAAAKLRAKYPG 134 (253)
T ss_pred HHHHhhcCEEccCchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCHH----HHHHHHHHHHHHCCC
Confidence 4577889999888876411 11246777788888888888876332100 123445556666666
Q ss_pred CcEEeeCHHHHhhhcCCCCcc-hHHHHHHHHhcCccEEEEEecC
Q 044512 135 ADLIKVSDDEVNFLTKGGDAE-KDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 135 ~dil~~n~~E~~~l~~~~~~~-~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
.+++-..+ |.-..+ ++..++.+...+++.++|-+|.
T Consensus 135 l~ivg~h~-------GYf~~~e~~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 135 LKIVGSHD-------GYFDPEEEEAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred ceEEEecC-------CCCChhhHHHHHHHHHhcCCCEEEEeCCC
Confidence 66665553 111111 1356677888888888887775
No 124
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=44.35 E-value=34 Score=26.82 Aligned_cols=81 Identities=7% Similarity=0.009 Sum_probs=45.3
Q ss_pred HHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCcEEeeCHHHHhhhcCCC---CcchHHHHHHHHhcCcc
Q 044512 95 AALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN--HADLIKVSDDEVNFLTKGG---DAEKDDVVMSLWHDNLK 169 (230)
Q Consensus 95 ~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l~~~~---~~~~~~~~~~l~~~g~~ 169 (230)
.+.+.++++++..++|.+... .....+...+.-+ .+.++-.-+.+...-.+.. ..+.+++++.+.+.+.+
T Consensus 57 ~l~~~l~~~~i~~vIDATHPf-----A~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~~~~ 131 (249)
T PF02571_consen 57 GLAEFLRENGIDAVIDATHPF-----AAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKELGGG 131 (249)
T ss_pred HHHHHHHhCCCcEEEECCCch-----HHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhcCCC
Confidence 444556888999999998531 1222222222222 3444444444332211111 12345678888777778
Q ss_pred EEEEEecCCce
Q 044512 170 LLLVTYGAKGC 180 (230)
Q Consensus 170 ~vvvt~g~~g~ 180 (230)
.|++|.|.+..
T Consensus 132 ~iflttGsk~L 142 (249)
T PF02571_consen 132 RIFLTTGSKNL 142 (249)
T ss_pred CEEEeCchhhH
Confidence 99999999864
No 125
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=43.55 E-value=1.8e+02 Score=23.82 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCCCC-CCCCC---------HHHHHHHHHHHhh---hCcEEee----CHHHHhhhc-CC
Q 044512 90 RSAHMAALKAAKDAGVLLSYDPNVRL-PLWPS---------QDAARDGIKSIWN---HADLIKV----SDDEVNFLT-KG 151 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d~~~~~-~~~~~---------~~~~~~~~~~~l~---~~dil~~----n~~E~~~l~-~~ 151 (230)
.+.++++...|++.+++.++.+-.+. ..-.. |....+.+.++-+ .+|++++ |-.-.+-+. +.
T Consensus 141 ~a~vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e 220 (324)
T PRK12399 141 KAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGE 220 (324)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCccc
Confidence 45667777789999999999774322 11111 3334455556643 7999998 211111110 00
Q ss_pred CCcchHHHHHHHHh----cCccEEEEEecC
Q 044512 152 GDAEKDDVVMSLWH----DNLKLLLVTYGA 177 (230)
Q Consensus 152 ~~~~~~~~~~~l~~----~g~~~vvvt~g~ 177 (230)
..-+.+++++.+.+ .+..+|+++.|-
T Consensus 221 ~~yt~~eA~~~f~~~~~~~~~P~i~LSaGV 250 (324)
T PRK12399 221 VVYTKEEAAQHFKEQDAATHLPYIYLSAGV 250 (324)
T ss_pred ccccHHHHHHHHHHHhhccCCCEEEEcCCC
Confidence 11133445444433 467788887765
No 126
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=43.27 E-value=89 Score=21.12 Aligned_cols=43 Identities=14% Similarity=-0.021 Sum_probs=27.2
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
+.+.+.|++.|+....-.............+.|++|....+..
T Consensus 74 ~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~ 116 (131)
T cd08343 74 LRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSA 116 (131)
T ss_pred HHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEc
Confidence 4678999999997542111111112355677889999987764
No 127
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=42.94 E-value=1.2e+02 Score=21.56 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHH
Q 044512 88 PCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDE 144 (230)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 144 (230)
...+.+.++++.+++.|.++.++.+... .+...++++++|+++...-+
T Consensus 72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~---------~~~~~~il~~iD~l~~g~y~ 119 (147)
T TIGR02826 72 WNREALLSLLKIFKEKGLKTCLYTGLEP---------KDIPLELVQHLDYLKTGRWI 119 (147)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCC---------HHHHHHHHHhCCEEEEChHH
Confidence 4556788899999999999988876321 23456778999999988753
No 128
>PRK10386 curli assembly protein CsgE; Provisional
Probab=42.82 E-value=95 Score=21.69 Aligned_cols=50 Identities=12% Similarity=0.121 Sum_probs=26.1
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
|++|.|.|-.+...+-...+.++. |...+..+.|. .+.+..+++..+..+
T Consensus 38 Tr~G~DFY~~Fs~~~~~~~~~nlt-I~E~p~a~~GS-~ItV~~n~~vIy~t~ 87 (130)
T PRK10386 38 SSIGHDFYRAFSDKWESDYDGNLT-INERPSARWGS-WITITVNQDVIYQTF 87 (130)
T ss_pred ccccHhHHHHHHHHHhhhCCCcEE-EEEEEcCCCCc-EEEEEECCEEEEEEe
Confidence 789999775555444444443333 33333434444 333445566655544
No 129
>COG2403 Predicted GTPase [General function prediction only]
Probab=42.74 E-value=82 Score=26.49 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.7
Q ss_pred cccCC-CCcchHHHHHHHHHHHcCCCcccccccCC
Q 044512 197 KTIDT-TGAGDAFVGSFLVSVAKDANIFNVKFRLP 230 (230)
Q Consensus 197 ~~~dt-~GaGDaf~ag~~~~l~~g~~~~~a~~~~~ 230 (230)
.+.-| +|+|-+-++++++.++++....-.+-+||
T Consensus 130 aV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrhP 164 (449)
T COG2403 130 AVTATRTGVGKSAVSRYVARLLRERGYRVCVVRHP 164 (449)
T ss_pred EEEEeccccchhHHHHHHHHHHHHcCCceEEEecC
Confidence 44444 99999999999999998877766666655
No 130
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.69 E-value=1.7e+02 Score=23.10 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh------cC--CC-------C
Q 044512 89 CRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFL------TK--GG-------D 153 (230)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l------~~--~~-------~ 153 (230)
..+.+..+.+.+++.|++++-++-. .+.+..+.+.+|++.+--.++... .+ .+ .
T Consensus 64 G~~gl~~L~~~~~~~Gl~~~Tev~d-----------~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~ 132 (250)
T PRK13397 64 GLQGIRYLHEVCQEFGLLSVSEIMS-----------ERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLM 132 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeCC-----------HHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCC
Confidence 3467777777888899999887752 234445556789988755444322 11 11 1
Q ss_pred c---chHHHHHHHHhcCccEEEEEe-cC
Q 044512 154 A---EKDDVVMSLWHDNLKLLLVTY-GA 177 (230)
Q Consensus 154 ~---~~~~~~~~l~~~g~~~vvvt~-g~ 177 (230)
. +...+++.+.+.|.+.|++.. |-
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEcccc
Confidence 1 123467888888887777774 44
No 131
>PRK05783 hypothetical protein; Provisional
Probab=42.02 E-value=59 Score=20.78 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=23.2
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCCcceEEEEE
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVT 40 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~ 40 (230)
-|+.|+.+...|...|.+. + .+.+.|.++.+
T Consensus 16 lDPqG~aI~~aL~~lg~~~--V---~~VRvGK~iel 46 (84)
T PRK05783 16 RDPEGETIQRYVIERYTGN--I---IEVRAGKYLVF 46 (84)
T ss_pred cCchHHHHHHHHHHcCCCC--c---ceEEeeEEEEE
Confidence 4899999999999998764 2 34466776644
No 132
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=42.00 E-value=35 Score=21.00 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=22.1
Q ss_pred CChhHHHHHHHHHHCCCC-ccceEecCCCcceEEEEE
Q 044512 5 DDEFGHMLVNILKQNNVK-TEGVCFDNHARTALAFVT 40 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~-~~~i~~~~~~~t~~~~v~ 40 (230)
.|+.|+.+.+.|+..|++ +.. .+++..+.+
T Consensus 14 ~Dp~G~ti~~~l~~lg~~~v~~------Vr~~k~~~l 44 (73)
T PRK06423 14 EDPEALTILKNLNILGYNGIKG------VSISKVYYF 44 (73)
T ss_pred cChHHHHHHHHHHHcCCCCcce------EEEEEEEEE
Confidence 589999999999999865 232 356666655
No 133
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=41.80 E-value=65 Score=20.97 Aligned_cols=41 Identities=20% Similarity=0.113 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEE
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFM 50 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~ 50 (230)
.-+.+.+.+++.|+++..-.. ....+....+.|++|++..+
T Consensus 72 ~~~~~~~~~~~~g~~v~~~~~--~~~~g~~~~~~DPdGn~ie~ 112 (114)
T cd07261 72 AVDALYAEWQAKGVKIIQEPT--EMDFGYTFVALDPDGHRLRV 112 (114)
T ss_pred HHHHHHHHHHHCCCeEecCcc--ccCCccEEEEECCCCCEEEe
Confidence 347788899999998653221 22455667788999988654
No 134
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=41.70 E-value=34 Score=21.46 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHCCCC-ccceEecCCCcceEEEEE
Q 044512 5 DDEFGHMLVNILKQNNVK-TEGVCFDNHARTALAFVT 40 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~-~~~i~~~~~~~t~~~~v~ 40 (230)
.|+.|+.+.+.|+..|++ +.. .+++.++.+
T Consensus 14 ~Dp~G~ai~~~l~~lg~~~v~~------Vr~~k~~~l 44 (80)
T PRK05974 14 LDPQGQAIKGALGSLGYDGVED------VRQGKYFEL 44 (80)
T ss_pred cChHHHHHHHHHHHcCCCCcce------EEEEEEEEE
Confidence 589999999999999887 232 345666655
No 135
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=40.73 E-value=95 Score=23.18 Aligned_cols=58 Identities=28% Similarity=0.239 Sum_probs=36.2
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeC-CCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCH
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDP-NVRLPLWPSQDAARDGIKSIWN-HADLIKVSD 142 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~-~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~ 142 (230)
..+|++.+... .+.....++++.+++.|+++.++. ++. + ..+......+ .+|++.++.
T Consensus 75 ~Gad~i~vh~~-----~~~~~~~~~i~~~~~~g~~~~~~~~~~~-----t---~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 75 AGADIVTVLGV-----ADDATIKGAVKAAKKHGKEVQVDLINVK-----D---KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCEEEEecc-----CCHHHHHHHHHHHHHcCCEEEEEecCCC-----C---hHHHHHHHHHcCCCEEEEcC
Confidence 46787755442 122456788888999999999874 421 1 1233344444 799998753
No 136
>PF14502 HTH_41: Helix-turn-helix domain
Probab=39.95 E-value=71 Score=18.00 Aligned_cols=41 Identities=12% Similarity=-0.038 Sum_probs=28.3
Q ss_pred eCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceE
Q 044512 140 VSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCG 181 (230)
Q Consensus 140 ~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~ 181 (230)
+..+|...-++....+.+.+++.|.+.|. .-+..+|..|.+
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~ga-I~Le~rGh~GTf 47 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGA-IKLESRGHLGTF 47 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCc-EEeeecCcCccc
Confidence 34556666666666677788888888886 556667777654
No 137
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=39.65 E-value=92 Score=22.40 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.8
Q ss_pred CChhHHHHHHHHHHCCCCcc
Q 044512 5 DDEFGHMLVNILKQNNVKTE 24 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~ 24 (230)
.|++|..+.+.||+.|.-+.
T Consensus 62 ~D~Fg~aL~~aLR~~GYaV~ 81 (151)
T PRK13883 62 PDAFGQALVKALRDKGYALL 81 (151)
T ss_pred CcHHHHHHHHHHHHcCeEEE
Confidence 58999999999999999763
No 138
>smart00642 Aamy Alpha-amylase domain.
Probab=39.63 E-value=45 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCC
Q 044512 91 SAHMAALKAAKDAGVLLSYDPNVR 114 (230)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~d~~~~ 114 (230)
+...++++.++++|+.+++|....
T Consensus 70 ~d~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 70 EDFKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCC
Confidence 678999999999999999999753
No 139
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=39.44 E-value=93 Score=20.07 Aligned_cols=43 Identities=9% Similarity=-0.114 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEE
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMF 51 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~ 51 (230)
.-+.+.+.+++.|+....... .....+..+.+.|++|.+..+.
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~~DPdG~~iEi~ 109 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERP-RVQGEGRSIYFYDPDGHLLELH 109 (113)
T ss_pred HHHHHHHHHHHcCCccCCCcc-ccCCCceEEEEECCCCCEEEEE
Confidence 456788999999998653221 1112456777788899887665
No 140
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=39.37 E-value=34 Score=21.82 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=22.0
Q ss_pred CChhHHHHHHHHHHCCCC-ccceEecCCCcceEEEEE
Q 044512 5 DDEFGHMLVNILKQNNVK-TEGVCFDNHARTALAFVT 40 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~-~~~i~~~~~~~t~~~~v~ 40 (230)
-|+.|+.+...|...|.+ ++. .++|.++-+
T Consensus 15 lDPqG~ti~~aL~~lg~~~V~~------vR~gK~~el 45 (83)
T COG1828 15 LDPEGETIEKALHRLGYNEVSD------VRVGKVIEL 45 (83)
T ss_pred cCchhHHHHHHHHHcCCcccce------eeeeeEEEE
Confidence 389999999999999987 333 345555544
No 141
>PTZ00445 p36-lilke protein; Provisional
Probab=38.54 E-value=1.5e+02 Score=22.75 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHCCCeEE-EeCC
Q 044512 89 CRSAHMAALKAAKDAGVLLS-YDPN 112 (230)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~-~d~~ 112 (230)
+.+....+.+..++.|++++ +|..
T Consensus 27 ~~~~~~~~v~~L~~~GIk~Va~D~D 51 (219)
T PTZ00445 27 PHESADKFVDLLNECGIKVIASDFD 51 (219)
T ss_pred HHHHHHHHHHHHHHcCCeEEEecch
Confidence 44666777777888998754 5664
No 142
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=37.95 E-value=24 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCChhHHHHHHHHHHCCCCccceEecCC
Q 044512 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 3 vG~D~~g~~i~~~l~~~gi~~~~i~~~~~ 31 (230)
.|.++++++++-.|.+.||+.+.+.+...
T Consensus 19 ~g~cpf~~rvrl~L~eKgi~ye~~~vd~~ 47 (91)
T cd03061 19 IGNCPFCQRLFMVLWLKGVVFNVTTVDMK 47 (91)
T ss_pred CCCChhHHHHHHHHHHCCCceEEEEeCCC
Confidence 68899999999999999999886655543
No 143
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=37.89 E-value=1e+02 Score=20.31 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
+.=+.+.+.|++.|+++....... .-+..+.+.|++|.+..+.+
T Consensus 74 ~~v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 74 EALERRVAALEASGLGIGWIEGDP--GHGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred HHHHHHHHHHHHcCCccccccCCC--CCcceEEEECCCCCEEEEEE
Confidence 344667899999999864322112 23445667889998887765
No 144
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=37.67 E-value=43 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=22.2
Q ss_pred CChhHHHHHHHHHHCCCC-ccceEecCCCcceEEEEE
Q 044512 5 DDEFGHMLVNILKQNNVK-TEGVCFDNHARTALAFVT 40 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~-~~~i~~~~~~~t~~~~v~ 40 (230)
.|+.|+.+...|+..|++ +.. .+++..+.+
T Consensus 14 ~Dp~G~ti~~~l~~lg~~~v~~------Vr~~k~~~l 44 (80)
T TIGR00302 14 LDPEGAAIQRALALLGYNEVKD------VRTGKVIEL 44 (80)
T ss_pred cChHHHHHHHHHHHcCCCCcce------EEEEEEEEE
Confidence 589999999999999887 332 345666554
No 145
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=37.29 E-value=1e+02 Score=20.52 Aligned_cols=45 Identities=11% Similarity=-0.086 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHCCCCccceEec--CCCcceEEEEEEecCCeeeEEEe
Q 044512 8 FGHMLVNILKQNNVKTEGVCFD--NHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~--~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
.=+.+.+.|++.|+........ .....+..+.+.|++|.+..+.+
T Consensus 81 d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~ 127 (128)
T cd07242 81 AVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVA 127 (128)
T ss_pred HHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEe
Confidence 3467889999999986543221 11234556667788998876654
No 146
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=37.23 E-value=2.6e+02 Score=23.79 Aligned_cols=85 Identities=6% Similarity=-0.050 Sum_probs=48.1
Q ss_pred ccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh-CcEEe-----eCHHHHhh
Q 044512 74 AKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNH-ADLIK-----VSDDEVNF 147 (230)
Q Consensus 74 ~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dil~-----~n~~E~~~ 147 (230)
.+.+.++|- -.+...+.+.++++.+++.++++.+...+-..+.+ .+.+.++.++ +|.+. .|.+-...
T Consensus 74 ~ggVtisGG--Gepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~-----~e~~~~L~~~gld~v~iSvka~dpe~h~k 146 (404)
T TIGR03278 74 DTKVTISGG--GDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDD-----PEIAEFLIDNGVREVSFTVFATDPELRRE 146 (404)
T ss_pred CCEEEEECC--cccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCC-----HHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 355555542 22334567799999999999988876222112222 3556666654 66664 44556666
Q ss_pred hcCCCCc-chHHHHHHHHh
Q 044512 148 LTKGGDA-EKDDVVMSLWH 165 (230)
Q Consensus 148 l~~~~~~-~~~~~~~~l~~ 165 (230)
+.|.+.. ..-+.++.|.+
T Consensus 147 l~G~~~a~~ILe~L~~L~e 165 (404)
T TIGR03278 147 WMKDPTPEASLQCLRRFCE 165 (404)
T ss_pred HhCCCCHHHHHHHHHHHHh
Confidence 7776652 22233444444
No 147
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=36.88 E-value=1.1e+02 Score=20.12 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeE
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREF 49 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~ 49 (230)
..=+.+.+.|++.|+....-....+ ...+...+.|++|....
T Consensus 82 ~~v~~~~~~l~~~g~~~~~~~~~~~-~g~~~~~~~DPdG~~iE 123 (125)
T cd07241 82 EAVDELTERLRADGYLIIGEPRTTG-DGYYESVILDPEGNRIE 123 (125)
T ss_pred HHHHHHHHHHHHCCCEEEeCceecC-CCeEEEEEECCCCCEEE
Confidence 3457789999999997543111111 22223446788887653
No 148
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=36.86 E-value=1.2e+02 Score=23.52 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=29.8
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHH-HCCCeEEEeCCCC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAK-DAGVLLSYDPNVR 114 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~d~~~~ 114 (230)
...|.+.++|-. +...+...++++..+ +.+.|+++-|++.
T Consensus 40 ~GTDaImIGGS~---gvt~~~~~~~v~~ik~~~~lPvilfP~~~ 80 (240)
T COG1646 40 AGTDAIMIGGSD---GVTEENVDNVVEAIKERTDLPVILFPGSP 80 (240)
T ss_pred cCCCEEEECCcc---cccHHHHHHHHHHHHhhcCCCEEEecCCh
Confidence 467999888842 334466777888787 7889999999854
No 149
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=36.80 E-value=28 Score=24.08 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=29.7
Q ss_pred cEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCC
Q 044512 136 DLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAK 178 (230)
Q Consensus 136 dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~ 178 (230)
-+-+....|...|...+.....+.++.+...++..+|+|.|-.
T Consensus 50 RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~~ 92 (127)
T PF02603_consen 50 RIQIIGNTESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGLE 92 (127)
T ss_dssp SEEEE-HHHHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT-
T ss_pred eEEEEcHHHHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcCC
Confidence 4777888888888666655445678888889999999998864
No 150
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=36.74 E-value=57 Score=25.16 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=7.4
Q ss_pred HHHHhcCccE----EEEEec
Q 044512 161 MSLWHDNLKL----LLVTYG 176 (230)
Q Consensus 161 ~~l~~~g~~~----vvvt~g 176 (230)
+.|...|... .|++.+
T Consensus 58 ~~L~~~gl~~~~~~~Ii~s~ 77 (242)
T TIGR01459 58 KTLKSLGINADLPEMIISSG 77 (242)
T ss_pred HHHHHCCCCccccceEEccH
Confidence 4444445432 455544
No 151
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=36.31 E-value=1.4e+02 Score=25.53 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=37.0
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVS 141 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n 141 (230)
+.+|++.++...+..... .-..+.++.+++.+.++++--- ..... .+.+.+.++.+|+++.+
T Consensus 35 ~~aD~viinTC~v~~~a~-~~~~~~i~~~~~~~~~vvvgGc-~a~~~------pee~~~~~~~vd~v~g~ 96 (430)
T TIGR01125 35 EDADYVIVNTCGFIEDAR-QESIDTIGELADAGKKVIVTGC-LVQRY------KEELKEEIPEVHAITGS 96 (430)
T ss_pred ccCCEEEEeCCCccchHH-HHHHHHHHHHHhcCCCEEEECC-ccccc------hHHHHhhCCCCcEEECC
Confidence 468999888755544433 3345667777777877776332 22212 24444446678887766
No 152
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=36.28 E-value=54 Score=16.66 Aligned_cols=30 Identities=3% Similarity=0.028 Sum_probs=19.1
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcC
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDN 167 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g 167 (230)
+.++..|...+.|...++....+..|.+.|
T Consensus 1 l~mtr~diA~~lG~t~ETVSR~l~~l~~~g 30 (32)
T PF00325_consen 1 LPMTRQDIADYLGLTRETVSRILKKLERQG 30 (32)
T ss_dssp EE--HHHHHHHHTS-HHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHhCCcHHHHHHHHHHHHHcC
Confidence 356778888888887776666666676655
No 153
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=35.92 E-value=28 Score=19.78 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.2
Q ss_pred CCCcchHHHHHHHHHHHc
Q 044512 201 TTGAGDAFVGSFLVSVAK 218 (230)
Q Consensus 201 t~GaGDaf~ag~~~~l~~ 218 (230)
+.|.+|+...|+++|++.
T Consensus 2 ~~G~~Daa~Tgi~~G~l~ 19 (53)
T PF11167_consen 2 TIGLGDAADTGILYGLLW 19 (53)
T ss_pred eeeccCHHHHHHHHHHHH
Confidence 358999999999999864
No 154
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=35.38 E-value=25 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=22.6
Q ss_pred cCCCCcchHHHHHHHHHHHcC-CCccccc
Q 044512 199 IDTTGAGDAFVGSFLVSVAKD-ANIFNVK 226 (230)
Q Consensus 199 ~dt~GaGDaf~ag~~~~l~~g-~~~~~a~ 226 (230)
.|-.|-||..-|-+.|++++| .+.+||.
T Consensus 53 ~dkh~kGd~aEA~iAyAWLeg~it~eEav 81 (120)
T PF11469_consen 53 TDKHGKGDIAEALIAYAWLEGKITIEEAV 81 (120)
T ss_dssp GGCCGHHHHHHHHHHHHHHTTSS-HHHHH
T ss_pred ccccCccHHHHHHHHHHHHhccccHHHHH
Confidence 477899999999999999998 5666653
No 155
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=34.34 E-value=93 Score=18.22 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=23.6
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCc
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNL 168 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~ 168 (230)
..|++.++...++....+..++++.|.+.|.
T Consensus 23 ~lps~~~la~~~~vsr~tvr~al~~L~~~g~ 53 (64)
T PF00392_consen 23 RLPSERELAERYGVSRTTVREALRRLEAEGL 53 (64)
T ss_dssp BE--HHHHHHHHTS-HHHHHHHHHHHHHTTS
T ss_pred EeCCHHHHHHHhccCCcHHHHHHHHHHHCCc
Confidence 4568999999999888888888999988775
No 156
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=34.01 E-value=2.9e+02 Score=23.27 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred CChhHHHHHH-HHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEcccc
Q 044512 5 DDEFGHMLVN-ILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSIS 83 (230)
Q Consensus 5 ~D~~g~~i~~-~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~ 83 (230)
+...|+.+++ .|++.++....+......+.+..+... .|..... .+..+...+.+.|+++++.
T Consensus 10 TG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f--~g~~~~v------------~~~~~~~~~~~~Divf~a~-- 73 (369)
T PRK06598 10 RGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSF--GGKEGTL------------QDAFDIDALKKLDIIITCQ-- 73 (369)
T ss_pred CCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCccccc--CCCcceE------------EecCChhHhcCCCEEEECC--
Confidence 4567999998 999999986655543332222222111 0111000 0111122346788886643
Q ss_pred ccCchHHHHHHHHHHHHHHCCCe-EEEeCCCCC
Q 044512 84 LISEPCRSAHMAALKAAKDAGVL-LSYDPNVRL 115 (230)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~-~~~d~~~~~ 115 (230)
+.+...++...+.+.|++ +++|.++.-
T Consensus 74 -----~~~~s~~~~~~~~~aG~~~~VID~Ss~f 101 (369)
T PRK06598 74 -----GGDYTNEVYPKLRAAGWQGYWIDAASTL 101 (369)
T ss_pred -----CHHHHHHHHHHHHhCCCCeEEEECChHH
Confidence 235667777777788874 788988543
No 157
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=33.97 E-value=2.7e+02 Score=23.01 Aligned_cols=90 Identities=16% Similarity=0.248 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccccc
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSISL 84 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~ 84 (230)
+...|+.+++.|.+.+.+.+-+..-.+.+ ..|++...+. ++.......-.+....++.|+++++.
T Consensus 10 TG~VG~~~~~~L~e~~f~~~~~~~~AS~r---------SaG~~~~~f~---~~~~~v~~~~~~~~~~~~~Divf~~a--- 74 (334)
T COG0136 10 TGAVGQVLLELLEERHFPFEELVLLASAR---------SAGKKYIEFG---GKSIGVPEDAADEFVFSDVDIVFFAA--- 74 (334)
T ss_pred cchHHHHHHHHHHhcCCCcceEEEEeccc---------ccCCcccccc---CccccCccccccccccccCCEEEEeC---
Confidence 46789999999999988776433322211 1233322221 11111111112223345788886654
Q ss_pred cCchHHHHHHHHHHHHHHCCCeEEEeCCCC
Q 044512 85 ISEPCRSAHMAALKAAKDAGVLLSYDPNVR 114 (230)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~ 114 (230)
..+...++...+.+.|. +++|-++.
T Consensus 75 ----g~~~s~~~~p~~~~~G~-~VIdnsSa 99 (334)
T COG0136 75 ----GGSVSKEVEPKAAEAGC-VVIDNSSA 99 (334)
T ss_pred ----chHHHHHHHHHHHHcCC-EEEeCCcc
Confidence 22455778888888885 44566543
No 158
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=33.47 E-value=98 Score=22.51 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=29.5
Q ss_pred CCCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeE
Q 044512 2 QFGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREF 49 (230)
Q Consensus 2 ~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~ 49 (230)
.||+ .+.+++++.|+++||+. +..+.+...+..+.+.-.+|+-.+
T Consensus 110 ~IG~-rNv~~~~~~L~~~~Ipi--laeD~Gg~~gR~i~F~p~tG~v~v 154 (164)
T COG1871 110 KIGE-RNVEFAKEFLKDEGIPI--LAEDTGGDSGRTIEFNPSTGRVRV 154 (164)
T ss_pred hhhh-HHHHHHHHHHHHcCCcE--EEhhhCCCCCcEEEEecCCCcEEE
Confidence 4666 48999999999999986 333445455555555434454443
No 159
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=33.12 E-value=1.3e+02 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=29.5
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCC
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVR 114 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~ 114 (230)
.+..|.+.++|-. +...+.+.+++...++...|+++-|+..
T Consensus 30 ~~gtdai~vGGS~---~vt~~~~~~~v~~ik~~~lPvilfp~~~ 70 (232)
T PRK04169 30 ESGTDAIIVGGSD---GVTEENVDELVKAIKEYDLPVILFPGNI 70 (232)
T ss_pred hcCCCEEEEcCCC---ccchHHHHHHHHHHhcCCCCEEEeCCCc
Confidence 3567999998842 2334566777777787889999988753
No 160
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=32.25 E-value=1.4e+02 Score=23.06 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=29.0
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVR 114 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~ 114 (230)
...|.+.++|-. +...+.+.+++...++...|+++-|+..
T Consensus 26 ~gtdai~vGGS~---~vt~~~~~~~v~~ik~~~lPvilfp~~~ 65 (223)
T TIGR01768 26 SGTDAILIGGSQ---GVTYEKTDTLIEALRRYGLPIILFPSNP 65 (223)
T ss_pred cCCCEEEEcCCC---cccHHHHHHHHHHHhccCCCEEEeCCCc
Confidence 457999898842 2344566777777888889999988753
No 161
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=32.16 E-value=99 Score=19.48 Aligned_cols=56 Identities=11% Similarity=-0.068 Sum_probs=41.5
Q ss_pred HHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEE
Q 044512 125 RDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGY 182 (230)
Q Consensus 125 ~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~ 182 (230)
...+..++...+--+.+-+++...+|......-+.++.|++.|+....+. .+|-.+
T Consensus 5 ~~~~~~ll~~~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~--~kGY~L 60 (79)
T COG1654 5 SQMLLLLLLLLTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVR--GKGYLL 60 (79)
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecC--CCceec
Confidence 45667777888888888999999888887766778888998998654443 345433
No 162
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=32.14 E-value=66 Score=25.35 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHCCCeEEEeCCC
Q 044512 90 RSAHMAALKAAKDAGVLLSYDPNV 113 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d~~~ 113 (230)
.+...++++.++++|+.|++|...
T Consensus 51 ~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 51 MEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEET
T ss_pred hhhhhhhhhccccccceEEEeeec
Confidence 467899999999999999999864
No 163
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.04 E-value=2.1e+02 Score=21.13 Aligned_cols=56 Identities=23% Similarity=0.183 Sum_probs=34.2
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEe-CCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYD-PNVRLPLWPSQDAARDGIKSIWN-HADLIKVS 141 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n 141 (230)
..++.+.+... .+.+...++++.+++.|.++.++ +++. ++ .+.+. .+. .+|++..+
T Consensus 76 aGad~i~~h~~-----~~~~~~~~~i~~~~~~g~~~~v~~~~~~-----t~---~e~~~-~~~~~~d~v~~~ 133 (202)
T cd04726 76 AGADIVTVLGA-----APLSTIKKAVKAAKKYGKEVQVDLIGVE-----DP---EKRAK-LLKLGVDIVILH 133 (202)
T ss_pred cCCCEEEEEee-----CCHHHHHHHHHHHHHcCCeEEEEEeCCC-----CH---HHHHH-HHHCCCCEEEEc
Confidence 36677754432 12345677888899999998876 5432 12 23333 444 88998774
No 164
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=31.80 E-value=1.1e+02 Score=20.71 Aligned_cols=44 Identities=5% Similarity=-0.204 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
.=+.+.+.|++.|+++...... ...-+..+.+.|++|....+..
T Consensus 78 ~ld~~~~~l~~~gv~~~~~~~~-~~~~g~~~yf~DPdG~~iEl~~ 121 (131)
T cd08364 78 DVDEYTERIKALGVEMKPPRPR-VQGEGRSIYFYDFDNHLFELHT 121 (131)
T ss_pred HHHHHHHHHHHCCCEEecCCcc-ccCCceEEEEECCCCCEEEEec
Confidence 3466889999999976532111 1112567777888888876654
No 165
>PF09904 HTH_43: Winged helix-turn helix; InterPro: IPR017162 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 3KE2_B.
Probab=31.77 E-value=53 Score=21.27 Aligned_cols=39 Identities=13% Similarity=0.013 Sum_probs=26.5
Q ss_pred CHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCc
Q 044512 141 SDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKG 179 (230)
Q Consensus 141 n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g 179 (230)
|...+...+|++..+.++.++.|.+.|+...++..|.++
T Consensus 23 nvp~L~~~TGmPrRT~Qd~i~aL~~~~I~~~Fvq~G~R~ 61 (90)
T PF09904_consen 23 NVPALMEATGMPRRTIQDTIKALPELGIECEFVQDGERN 61 (90)
T ss_dssp -HHHHHHHH---HHHHHHHHHGGGGGT-EEEEE--TTS-
T ss_pred cHHHHHHHhCCCHhHHHHHHHHhhcCCeEEEEEecCccC
Confidence 777778888999888888899999999988888877764
No 166
>PF02515 CoA_transf_3: CoA-transferase family III; InterPro: IPR003673 CoA-transferases are found in organisms from all kingdoms of life. They catalyse reversible transfer reactions of coenzyme A groups from CoA-thioesters to free acids. There are at least three families of CoA-transferases, which differ in sequence and reaction mechanism: Family I consists of CoA-transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most use succinyl-CoA or acetyl-CoA as CoA donors. Family II consists of the homodimeric alpha-subunits of citrate lyase and citramalate lyase (2.8.3.10 from EC, 2.8.3.11 from EC). These enzymes catalyse the transfer of acyl carrier protein (ACP) with a covalently bound CoA derivative, but can accept free CoA thioesters as well. Family III consists of formyl-CoA:oxalate CoA-transferase [], succinyl-CoA:(R)-benzylsuccinate CoA-transferase [], (E)-cinnamoyl-CoA:(R)-phenyllactate CoA-transferase [], and butyrobetainyl-CoA:(R)-carnitine CoA-transferase []. These CoA-transferases occur in prokaryotes and eukaryotes, and catalyse CoA-transfer reactions in a highly substrate- and stereo-specific manner []. This entry represents family III CoA-transferases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1PT7_B 1PT8_A 1PQY_A 1Q7E_A 1Q6Y_A 1PT5_A 1XK6_B 1XK7_C 1XVT_A 1XVU_A ....
Probab=31.63 E-value=1.1e+02 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.113 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhCcEEeeCHH--HHhhhcCCCCcchHHHHHHHHhcCccEEEEEe
Q 044512 121 QDAARDGIKSIWNHADLIKVSDD--EVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 121 ~~~~~~~~~~~l~~~dil~~n~~--E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~ 175 (230)
.++.++.+.++++.+|+++-|-. .++.+ |. ..+.|++.+++.|.++.
T Consensus 7 ~~~gr~~l~~L~~~ADV~i~n~rpg~~~~l-Gl-------~~~~l~~~nP~LV~~~i 55 (191)
T PF02515_consen 7 SPEGRAALRRLLATADVVIENFRPGVLERL-GL-------DYEALRAINPRLVYCSI 55 (191)
T ss_dssp SHHHHHHHHHHHHT-SEEEEESSTTHHHHT-T--------SHHHHHHH-TT-EEEEE
T ss_pred CHHHHHHHHHHHHhCCEEEECCchhhhHhc-CC-------CHHHHHhhCCCCeEEEE
Confidence 45678999999999999998766 22222 11 12456666777777775
No 167
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=31.37 E-value=1.1e+02 Score=18.49 Aligned_cols=22 Identities=0% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCCccceEecCC
Q 044512 10 HMLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~ 31 (230)
..+++.++++|++...+...+.
T Consensus 14 ~~vL~~f~~~~vni~~I~Srp~ 35 (75)
T cd04880 14 AKALKVFAERGINLTKIESRPS 35 (75)
T ss_pred HHHHHHHHHCCCCEEEEEeeec
Confidence 4578999999999988865543
No 168
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=31.24 E-value=1.5e+02 Score=19.23 Aligned_cols=40 Identities=8% Similarity=-0.092 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEE
Q 044512 9 GHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMF 51 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~ 51 (230)
=+.+.+.|++.|+.... ......+..+.+.|++|++..+.
T Consensus 68 ~~~~~~~l~~~Gi~~~~---~~~~~~~~~~~~~DP~Gn~iel~ 107 (112)
T cd08344 68 FAAFARHLEAAGVALAA---APPGADPDGVWFRDPDGNLLQVK 107 (112)
T ss_pred HHHHHHHHHHcCCceec---CCCcCCCCEEEEECCCCCEEEEe
Confidence 36789999999998531 11112233466788999888765
No 169
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=31.24 E-value=97 Score=26.40 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=60.7
Q ss_pred CCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccc
Q 044512 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSI 82 (230)
Q Consensus 3 vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~ 82 (230)
||-++.|+.+...|.+.|+.. +.+. + +|- ++...+..+.++ .....+++ ...+..+|++.++.-
T Consensus 184 IGAGem~~lva~~L~~~g~~~--i~Ia-N-RT~----------erA~~La~~~~~-~~~~l~el-~~~l~~~DvVissTs 247 (414)
T COG0373 184 IGAGEMGELVAKHLAEKGVKK--ITIA-N-RTL----------ERAEELAKKLGA-EAVALEEL-LEALAEADVVISSTS 247 (414)
T ss_pred EcccHHHHHHHHHHHhCCCCE--EEEE-c-CCH----------HHHHHHHHHhCC-eeecHHHH-HHhhhhCCEEEEecC
Confidence 677888888888888888743 2211 1 111 111000000110 11122232 357789999977753
Q ss_pred cccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCC
Q 044512 83 SLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKG 151 (230)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 151 (230)
...--...+.+.+.+..- .. .+++|.+.+..+-+ ..-+..++...+.+++..+...
T Consensus 248 a~~~ii~~~~ve~a~~~r--~~-~livDiavPRdie~----------~v~~l~~v~l~~iDDL~~iv~~ 303 (414)
T COG0373 248 APHPIITREMVERALKIR--KR-LLIVDIAVPRDVEP----------EVGELPNVFLYTIDDLEEIVEE 303 (414)
T ss_pred CCccccCHHHHHHHHhcc--cC-eEEEEecCCCCCCc----------cccCcCCeEEEehhhHHHHHHH
Confidence 332233334444443321 12 78999985433222 2223456777777777776543
No 170
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=30.96 E-value=63 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=32.2
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEE
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt 174 (230)
.++++.++++|-+.++++......+-++..++.|...|++.
T Consensus 88 G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCv 128 (251)
T COG0149 88 GAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCV 128 (251)
T ss_pred CCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEc
Confidence 79999999999999988887655455566667888776665
No 171
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=30.13 E-value=93 Score=18.96 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=17.4
Q ss_pred HHHHHHHHCCCCccceEecCC
Q 044512 11 MLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 11 ~i~~~l~~~gi~~~~i~~~~~ 31 (230)
.+++.++++||+...|...+.
T Consensus 16 ~vL~~f~~~~iNlt~IeSRP~ 36 (74)
T cd04904 16 RALKLFEEFGVNLTHIESRPS 36 (74)
T ss_pred HHHHHHHHCCCcEEEEECCCC
Confidence 578899999999998876664
No 172
>PRK11478 putative lyase; Provisional
Probab=29.59 E-value=1.5e+02 Score=19.63 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEE
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFM 50 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~ 50 (230)
+.+.+.|++.|+.......... .......+.|++|....+
T Consensus 87 ~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DPdG~~iEl 126 (129)
T PRK11478 87 DAAVAHLESHNVKCEAIRVDPY-TQKRFTFFNDPDGLPLEL 126 (129)
T ss_pred HHHHHHHHHcCCeeeccccCCC-CCCEEEEEECCCCCEEEE
Confidence 5678899999998643321111 122334456788877544
No 173
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=29.50 E-value=98 Score=21.61 Aligned_cols=55 Identities=9% Similarity=0.020 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCccEEEEEecCCceEEEecCceeeecCccccccCCCCcchHHHHHHHHHHHcC
Q 044512 157 DDVVMSLWHDNLKLLLVTYGAKGCGYFTKKFKGRVPGFSVKTIDTTGAGDAFVGSFLVSVAKD 219 (230)
Q Consensus 157 ~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~~~~~~~~~~~~~~dt~GaGDaf~ag~~~~l~~g 219 (230)
++.++.|.+.++..+++-.+..|.+.+.+.+.. ...+.. + +|.|---+-++-.+|
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~-~~hp~L------~-~Dllge~v~a~h~~G 57 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVG-PRHPGL------K-RDLLGEQVEACHERG 57 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCC-cCCCCC------C-cCHHHHHHHHHHHCC
Confidence 456778888999999998888788888777652 222211 1 466655554444444
No 174
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=29.40 E-value=47 Score=19.84 Aligned_cols=14 Identities=21% Similarity=0.124 Sum_probs=12.2
Q ss_pred chHHHHHHHHHHHc
Q 044512 205 GDAFVGSFLVSVAK 218 (230)
Q Consensus 205 GDaf~ag~~~~l~~ 218 (230)
=|+|.+|+.+++.+
T Consensus 3 iDaf~vg~~~g~~~ 16 (67)
T PF02659_consen 3 IDAFAVGISYGLRG 16 (67)
T ss_pred HHHHHHHHHHHHHc
Confidence 39999999999983
No 175
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=29.23 E-value=3.3e+02 Score=22.78 Aligned_cols=78 Identities=6% Similarity=-0.020 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh------c--CCC------
Q 044512 87 EPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFL------T--KGG------ 152 (230)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l------~--~~~------ 152 (230)
+...+.+..+.+.+++.|++++-++-. ...+..+.+.+|++.+--.++..+ . |.+
T Consensus 165 g~~~e~l~~L~~~~~~~Gl~~~t~v~d-----------~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G 233 (360)
T PRK12595 165 GLGVEGLKILKQVADEYGLAVISEIVN-----------PADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRG 233 (360)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCC-----------HHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCC
Confidence 344577777888889999999887752 233344445588887655544322 1 111
Q ss_pred ----CcchHHHHHHHHhcCccEEEEEe
Q 044512 153 ----DAEKDDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 153 ----~~~~~~~~~~l~~~g~~~vvvt~ 175 (230)
..+...+++.+.+.|.+.+++..
T Consensus 234 ~~~t~~e~~~Ave~i~~~Gn~~i~L~e 260 (360)
T PRK12595 234 LSATIEEFIYAAEYIMSQGNGQIILCE 260 (360)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence 11224567788888887777763
No 176
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=28.96 E-value=4.3e+02 Score=23.70 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=69.1
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh--hCcEEeeCHHHHhhh
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN--HADLIKVSDDEVNFL 148 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~--~~dil~~n~~E~~~l 148 (230)
+...|.+.++.-...+ +......+++...+.|..++.+.- ..+..+.....+.+..++. ++++++|-.-|.+.+
T Consensus 324 i~~gD~vIfss~~ipg--ne~~~~~~~n~l~~~g~~i~~~~~--~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~ 399 (555)
T COG0595 324 IKEGDTVIFSSSPIPG--NEAAVYRLLNRLYKAGAKVITGGD--KKVHVSGHASREELKLMINLLRPKYLIPVHGEYRML 399 (555)
T ss_pred cCCCCeEEEeccCcCC--cHHHHHHHHHHHHhcCcEEeeccc--ceeEecCCCChHHHHHHHHhhCCceecccCCCcHHH
Confidence 4566766666533333 445667777777888888876541 1111111122444554444 788999988887665
Q ss_pred cCCCCcchHHHHHHHHhcCccE--EEEEecCCceEEEecCceeeecCccc--cccCCCCcchHHHHHH
Q 044512 149 TKGGDAEKDDVVMSLWHDNLKL--LLVTYGAKGCGYFTKKFKGRVPGFSV--KTIDTTGAGDAFVGSF 212 (230)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~g~~~--vvvt~g~~g~~~~~~~~~~~~~~~~~--~~~dt~GaGDaf~ag~ 212 (230)
. .-++.....|... +++.... -++.+.++........+. ..+|..|.||.=...+
T Consensus 400 ~--------~~a~la~~~G~~~~~i~i~~nG-~v~~l~~~~~~~~~~v~~g~~~iDg~~~gdvg~~vl 458 (555)
T COG0595 400 V--------AHAKLAEEEGIPQENIFILRNG-DVLELEGGKARVIGKVPAGDVYIDGNGIGDVGAIVL 458 (555)
T ss_pred H--------HHHHHHHhcCCCcccEEEecCc-eEEEecCCcccccCccccCCeEEcCCCCCcchhhHH
Confidence 1 1122222345433 5544321 233344444434443333 4889999998755444
No 177
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.93 E-value=3e+02 Score=24.08 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=39.6
Q ss_pred HCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHHHhh--hcCCC-CcchHHHHH----HHHh-----cCc
Q 044512 102 DAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HADLIKVSDDEVNF--LTKGG-DAEKDDVVM----SLWH-----DNL 168 (230)
Q Consensus 102 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E~~~--l~~~~-~~~~~~~~~----~l~~-----~g~ 168 (230)
..+.|+++-|.-...+|..+ ...+-+..+-. .+.++-|...++.. -.|.. ..+.++.+. .+.. ..-
T Consensus 178 a~~~PvliaPaMN~~M~~np-at~~Nl~~L~~~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~g 256 (475)
T PRK13982 178 AANRPILLAPAMNPLMWNNP-ATRRNVAQLKRDGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAG 256 (475)
T ss_pred hcCCCEEEEEcCCHHHhcCH-HHHHHHHHHHHCCCEEECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCC
Confidence 45678999898777788643 33444444444 45555555443321 22211 223333332 2221 233
Q ss_pred cEEEEEecC
Q 044512 169 KLLLVTYGA 177 (230)
Q Consensus 169 ~~vvvt~g~ 177 (230)
+.|+||.|+
T Consensus 257 kkvLITaGp 265 (475)
T PRK13982 257 RRVLITAGP 265 (475)
T ss_pred CEEEEecCC
Confidence 589999988
No 178
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=28.90 E-value=2.6e+02 Score=21.25 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeC-----HHHHhhhcCCCCcchHHHHHHHHh
Q 044512 91 SAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVS-----DDEVNFLTKGGDAEKDDVVMSLWH 165 (230)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n-----~~E~~~l~~~~~~~~~~~~~~l~~ 165 (230)
+...++++.+++.|..+.+..+.....+ .+.+.++++.+|.+.++ .+....+.|.......++++.+.+
T Consensus 81 ~~~~~li~~~~~~g~~~~i~TNG~~~~~------~~~~~~ll~~~d~v~isl~~~~~~~~~~~~g~~~~~v~~~i~~l~~ 154 (235)
T TIGR02493 81 EFLSELFKACKELGIHTCLDTSGFLGGC------TEAADELLEYTDLVLLDIKHFNPEKYKKLTGVSLQPTLDFAKYLAK 154 (235)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCCCcc------HHHHHHHHHhCCEEEEeCCCCCHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 4556888888888988877766421111 23445556666766554 334444555533333445667777
Q ss_pred cCccE
Q 044512 166 DNLKL 170 (230)
Q Consensus 166 ~g~~~ 170 (230)
.|...
T Consensus 155 ~g~~~ 159 (235)
T TIGR02493 155 RNKPI 159 (235)
T ss_pred CCCcE
Confidence 77653
No 179
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=28.88 E-value=74 Score=24.85 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=31.9
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecC
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
.++++.++++|-+.++++.......-++...+.|...|++. |+
T Consensus 84 G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCi-GE 126 (242)
T cd00311 84 GAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCV-GE 126 (242)
T ss_pred CCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEe-CC
Confidence 68999999999999988887655444556667888666654 44
No 180
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=28.46 E-value=2.2e+02 Score=20.20 Aligned_cols=21 Identities=24% Similarity=0.064 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHCCCeEEEe
Q 044512 90 RSAHMAALKAAKDAGVLLSYD 110 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d 110 (230)
.+.+.++++.+++.|+|+++-
T Consensus 22 ~~~i~~l~~~ar~~g~pVi~~ 42 (157)
T cd01012 22 INNTVKLAKAAKLLDVPVILT 42 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 356788889999999999874
No 181
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=28.44 E-value=2.5e+02 Score=20.78 Aligned_cols=48 Identities=19% Similarity=0.304 Sum_probs=32.4
Q ss_pred CCChhHHHHHHHHHHCCCCccceEe----cCCCcceEEEEEEecCCeeeEEEe
Q 044512 4 GDDEFGHMLVNILKQNNVKTEGVCF----DNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 4 G~D~~g~~i~~~l~~~gi~~~~i~~----~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
|--.....+.+.|++.|..+-++.. ..+.++|+.++.++. |+..+..+
T Consensus 17 GKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~t-g~~~~la~ 68 (179)
T COG1618 17 GKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLAT-GEEGILAR 68 (179)
T ss_pred cHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccC-CceEEEEE
Confidence 3344567888999999777665432 456688999888754 66655543
No 182
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.34 E-value=1.8e+02 Score=19.11 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
+.=+.+.+.|++.|+..... .....+..+.+.|++|.+..+.+
T Consensus 76 ~~v~~~~~~l~~~g~~~~~~---~~~~~~~~~~~~DPdG~~iEi~~ 118 (125)
T cd07255 76 ADLAAALRRLIELGIPLVGA---SDHLVSEALYLSDPEGNGIEIYA 118 (125)
T ss_pred HHHHHHHHHHHHcCCceecc---ccccceeEEEEECCCCCEEEEEE
Confidence 44577899999999964322 12233455667889999987765
No 183
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.15 E-value=1.5e+02 Score=18.45 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEE
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTL 41 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~ 41 (230)
+++.+++-++++||..+++- ++ --..++++.
T Consensus 17 F~rk~L~I~E~~~is~Eh~P--SG-ID~~Siii~ 47 (76)
T cd04911 17 FGRKLLSILEDNGISYEHMP--SG-IDDISIIIR 47 (76)
T ss_pred HHHHHHHHHHHcCCCEeeec--CC-CccEEEEEE
Confidence 68899999999999998773 33 233555543
No 184
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=28.13 E-value=2.5e+02 Score=23.67 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=37.5
Q ss_pred cCchHHHHHHHHHHHHHHCCCeEEEeCCC-------------CCCCCCCHHHHHHHHHHHhhhCcEEeeCH
Q 044512 85 ISEPCRSAHMAALKAAKDAGVLLSYDPNV-------------RLPLWPSQDAARDGIKSIWNHADLIKVSD 142 (230)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~d~~~-------------~~~~~~~~~~~~~~~~~~l~~~dil~~n~ 142 (230)
-.+.++..+..+.+.+++.++|+++|... ..+-|+ .++...+.+.++|-..++.
T Consensus 200 GQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~s----I~~IarEm~sYaD~~~mS~ 266 (471)
T COG3033 200 GQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWS----IEEIAREMYSYADGCTMSA 266 (471)
T ss_pred CCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCccccccc----HHHHHHHHHhhhhhheeec
Confidence 34667888899999999999999998731 111132 3555667777887666554
No 185
>PRK09206 pyruvate kinase; Provisional
Probab=28.03 E-value=2.9e+02 Score=24.15 Aligned_cols=92 Identities=9% Similarity=0.002 Sum_probs=51.9
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGG 152 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~ 152 (230)
+.|++..|- +..........+.+.........++.-.- ....-+-+.+++..+|.+++..-++..=.+.+
T Consensus 185 ~vD~ia~SF--Vr~~~Dv~~~r~~l~~~~~~~~~iiaKIE--------t~eav~nldeIl~~~DgImVaRGDLgvelg~e 254 (470)
T PRK09206 185 GVDFVAASF--IRKRSDVLEIREHLKAHGGENIQIISKIE--------NQEGLNNFDEILEASDGIMVARGDLGVEIPVE 254 (470)
T ss_pred CCCEEEEcC--CCCHHHHHHHHHHHHHcCCCCceEEEEEC--------CHHHHHhHHHHHHhCCEEEECcchhhhhcCHH
Confidence 567776653 33433334444444332212345665553 34456778888888999999998887655533
Q ss_pred Ccch--HHHHHHHHhcCccEEEEE
Q 044512 153 DAEK--DDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 153 ~~~~--~~~~~~l~~~g~~~vvvt 174 (230)
.... ...++...+.|...++-|
T Consensus 255 ~vp~~qk~ii~~~~~~gkpvI~AT 278 (470)
T PRK09206 255 EVIFAQKMMIEKCNRARKVVITAT 278 (470)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc
Confidence 2211 123344455777666655
No 186
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=27.94 E-value=1e+02 Score=25.95 Aligned_cols=43 Identities=26% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHH
Q 044512 92 AHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDD 143 (230)
Q Consensus 92 ~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~ 143 (230)
.+..+.+.|+++|+++++|-..... ..++++-..+||++=+..
T Consensus 165 Die~ia~iAh~~gvpliVDNT~atp---------yl~rP~~hGADIVvHS~T 207 (426)
T COG2873 165 DIEAIAEIAHRHGVPLIVDNTFATP---------YLCRPIEHGADIVVHSAT 207 (426)
T ss_pred CHHHHHHHHHHcCCcEEEecCCCcc---------eecchhhcCCCEEEEeec
Confidence 3467778899999999999875322 223445567888876543
No 187
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=27.82 E-value=60 Score=26.09 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=39.6
Q ss_pred ccEEEEcccccc---CchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHH
Q 044512 74 AKIFHYGSISLI---SEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDD 143 (230)
Q Consensus 74 ~~~v~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~ 143 (230)
..+|+++.-.-. ...+.+.+.++.+.|+++|+++.+|-.. +|.........+.++..++|.+.+...
T Consensus 125 ~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGAR---l~~a~~~~~~~~~e~~~~~D~v~~~~t 194 (290)
T PF01212_consen 125 PAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGAR---LANAAAALGVSLAEIAAGADSVSFGGT 194 (290)
T ss_dssp EEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETT---HHHHHCHHHHHHHHHHTTSSEEEEETT
T ss_pred ccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhh---HHHhhhcccccHHHHhhhCCEEEEEEE
Confidence 456766653221 2456788899999999999999999862 111111224445666677777766544
No 188
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=27.72 E-value=1.7e+02 Score=22.73 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=25.3
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVR 114 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~ 114 (230)
...|.+.++|- . .+...+....++++. .+.|+++-|+..
T Consensus 31 ~gtDai~VGGS-~-~~~~~d~vv~~ik~~--~~lPvilfPg~~ 69 (230)
T PF01884_consen 31 SGTDAIIVGGS-D-TGVTLDNVVALIKRV--TDLPVILFPGSP 69 (230)
T ss_dssp TT-SEEEEE-S-T-HCHHHHHHHHHHHHH--SSS-EEEETSTC
T ss_pred cCCCEEEECCC-C-CccchHHHHHHHHhc--CCCCEEEeCCCh
Confidence 67899999984 4 455555666666554 788999988754
No 189
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=27.47 E-value=1.1e+02 Score=25.90 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhh-hCcEEeeCHHH
Q 044512 94 MAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWN-HADLIKVSDDE 144 (230)
Q Consensus 94 ~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~-~~dil~~n~~E 144 (230)
.++++.+++++.|+++|.++-..+. ....+.+.+. .+|+++.+-+-
T Consensus 177 ~~l~~ia~~~~lpvivD~aSg~~v~-----~e~~l~~~la~GaDLV~~SgdK 223 (395)
T COG1921 177 EELVEIAHEKGLPVIVDLASGALVD-----KEPDLREALALGADLVSFSGDK 223 (395)
T ss_pred HHHHHHHHHcCCCEEEecCCccccc-----cccchhHHHhcCCCEEEEecch
Confidence 5678889999999999998632211 1344566665 59999887664
No 190
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=27.34 E-value=2.1e+02 Score=21.80 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=27.5
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHH-CCCeEEEeCCCC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKD-AGVLLSYDPNVR 114 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~ 114 (230)
.+|.+.++|- .+...+.+.++++..++ ...|+++-|+..
T Consensus 24 gtDaI~VGGS---~gvt~~~~~~~v~~ik~~~~lPvilfp~~~ 63 (205)
T TIGR01769 24 GTDAIMVGGS---LGIVESNLDQTVKKIKKITNLPVILFPGNV 63 (205)
T ss_pred CCCEEEEcCc---CCCCHHHHHHHHHHHHhhcCCCEEEECCCc
Confidence 4799988873 23345666777777777 578999888753
No 191
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=27.31 E-value=23 Score=28.96 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=37.3
Q ss_pred CchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCC
Q 044512 86 SEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGD 153 (230)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~ 153 (230)
.++..+...+.+..++ +.++.++++.....+ ...++..+++.+|++|+..+++...
T Consensus 147 ~ei~~~~~~~s~~~~~---~~~~~~~g~~i~~~p---------n~~l~l~~~~~~ne~e~~~i~~~ad 202 (330)
T KOG2855|consen 147 SEILIEEPMRSLHIAA---VKVAKNAGPAIFYDP---------NLRLPLWDSLEENESEIASIWNMAD 202 (330)
T ss_pred eecCCcchhHHHHHhh---hhhhhcccccccCCC---------CccccccccccccHHHHHHHhhhhh
Confidence 4444455555555444 566777765443332 4567899999999999999987664
No 192
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.22 E-value=2.5e+02 Score=21.75 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=31.7
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeE--EEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEee
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLL--SYDPNVRLPLWPSQDAARDGIKSIWNHADLIKV 140 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~ 140 (230)
.+|.+.+.. +.......++++..++.|++. .++|.- + .+.+..+++.+|++.+
T Consensus 82 Gad~it~H~-----Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T-------~---~~~l~~~l~~vD~VLv 136 (229)
T PRK09722 82 GADFITLHP-----ETINGQAFRLIDEIRRAGMKVGLVLNPET-------P---VESIKYYIHLLDKITV 136 (229)
T ss_pred CCCEEEECc-----cCCcchHHHHHHHHHHcCCCEEEEeCCCC-------C---HHHHHHHHHhcCEEEE
Confidence 567763322 221123567888889988764 555541 1 4566677777776654
No 193
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=27.16 E-value=1.6e+02 Score=18.28 Aligned_cols=45 Identities=16% Similarity=0.095 Sum_probs=32.0
Q ss_pred eCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEEecC
Q 044512 140 VSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYFTKK 186 (230)
Q Consensus 140 ~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~ 186 (230)
++..|+..-++.+.....+.++.|...|. |-.+.|..|.+...+.
T Consensus 26 ~s~~eiA~~~~i~~~~l~kil~~L~~~Gl--i~s~~G~~GGy~L~~~ 70 (83)
T PF02082_consen 26 VSSKEIAERLGISPSYLRKILQKLKKAGL--IESSRGRGGGYRLARP 70 (83)
T ss_dssp BEHHHHHHHHTS-HHHHHHHHHHHHHTTS--EEEETSTTSEEEESS-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHhhCCe--eEecCCCCCceeecCC
Confidence 66777777777776666778888888886 6667888887776543
No 194
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.10 E-value=1.7e+02 Score=19.01 Aligned_cols=43 Identities=2% Similarity=-0.263 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcc-eEEEEEEecCCeeeEEEe
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHART-ALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t-~~~~v~~~~~g~~~~~~~ 52 (230)
.-+.+.+.+++.|+....-. ...+. +....+.|++|.+..+.+
T Consensus 77 d~~~~~~~l~~~G~~~~~~~--~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 77 EVDAVLARAAAAGATIVKPP--QDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHHHHHHhCCCEEecCC--ccCCCCceEEEEECCCCCEEEEee
Confidence 45777888999998764211 11122 566677888888876653
No 195
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=27.02 E-value=3e+02 Score=25.15 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=45.1
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHC-CCe-EEEeCCCCCC-----CC--CCHHHHHHHHHHHhhhCcEEe
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDA-GVL-LSYDPNVRLP-----LW--PSQDAARDGIKSIWNHADLIK 139 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-~~~d~~~~~~-----~~--~~~~~~~~~~~~~l~~~dil~ 139 (230)
..++++|+|.+-|--.. +..+-...+ +..+++. |.+ +++||..... .| ..+..-...+..++..+ +.
T Consensus 165 ~Di~nAd~Ili~GsNpa-e~hPv~~~~-i~~Ak~~~GaklIvVDPR~t~Ta~~AD~~l~irPGTD~All~gmi~~i--i~ 240 (649)
T cd02752 165 NDIKNADVILVMGGNPA-EAHPVSFKW-ILEAKEKNGAKLIVVDPRFTRTAAKADLYVPIRSGTDIAFLGGMINYI--IR 240 (649)
T ss_pred HHHhcCCEEEEECCChH-HhCcHHHHH-HHHHHHcCCCeEEEEcCCCCchhHhcCEeeCcCCChHHHHHHHHHHHH--Hh
Confidence 34678898765442221 111122333 3445554 755 5689864321 00 00111111222222211 12
Q ss_pred eCHHHHhhhcCCCCcchHHHHHHHHhc
Q 044512 140 VSDDEVNFLTKGGDAEKDDVVMSLWHD 166 (230)
Q Consensus 140 ~n~~E~~~l~~~~~~~~~~~~~~l~~~ 166 (230)
-+.+.+..++|.+.....++++.+.+.
T Consensus 241 ytpe~v~~itGvp~e~I~~~A~~~a~a 267 (649)
T cd02752 241 YTPEEVEDICGVPKEDFLKVAEMFAAT 267 (649)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 356677788887766666777777665
No 196
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=26.89 E-value=1.1e+02 Score=24.05 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=45.1
Q ss_pred HHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHh--hhCcEEeeCHHHHhhhcCCCC---cchHHHHHHHHhcCc
Q 044512 94 MAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIW--NHADLIKVSDDEVNFLTKGGD---AEKDDVVMSLWHDNL 168 (230)
Q Consensus 94 ~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l--~~~dil~~n~~E~~~l~~~~~---~~~~~~~~~l~~~g~ 168 (230)
..+.+..++.++.+++|.+.... ....+-..+.- ..+-++-.-+.+.... |... .+.+++++.+...+
T Consensus 56 e~l~~~l~e~~i~llIDATHPyA-----a~iS~Na~~aake~gipy~r~eRP~~~~~-gd~~~~V~d~~ea~~~~~~~~- 128 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATHPYA-----ARISQNAARAAKETGIPYLRLERPPWAPN-GDNWIEVADIEEAAEAAKQLG- 128 (257)
T ss_pred HHHHHHHHHcCCCEEEECCChHH-----HHHHHHHHHHHHHhCCcEEEEECCccccC-CCceEEecCHHHHHHHHhccC-
Confidence 45556678889999999984311 11111111111 1344444444443332 2222 23455666665555
Q ss_pred cEEEEEecCCceEEEe
Q 044512 169 KLLLVTYGAKGCGYFT 184 (230)
Q Consensus 169 ~~vvvt~g~~g~~~~~ 184 (230)
+.|++|.|.+..-.|.
T Consensus 129 ~rVflt~G~~~l~~f~ 144 (257)
T COG2099 129 RRVFLTTGRQNLAHFV 144 (257)
T ss_pred CcEEEecCccchHHHh
Confidence 7899999998765543
No 197
>PLN02645 phosphoglycolate phosphatase
Probab=26.73 E-value=1.3e+02 Score=24.42 Aligned_cols=11 Identities=0% Similarity=-0.335 Sum_probs=5.5
Q ss_pred HHHHHHHHhcC
Q 044512 157 DDVVMSLWHDN 167 (230)
Q Consensus 157 ~~~~~~l~~~g 167 (230)
.+.+++|...|
T Consensus 75 ~~~~~~l~~lG 85 (311)
T PLN02645 75 AQYGKKFESLG 85 (311)
T ss_pred HHHHHHHHHCC
Confidence 34455555544
No 198
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=26.65 E-value=33 Score=31.04 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=39.0
Q ss_pred HHHHHHhcCccEEEEEecCCce------EEEecCceeeecCcc--ccccCCCCcchHHHHHHHHHHHcCCCcccccc
Q 044512 159 VVMSLWHDNLKLLLVTYGAKGC------GYFTKKFKGRVPGFS--VKTIDTTGAGDAFVGSFLVSVAKDANIFNVKF 227 (230)
Q Consensus 159 ~~~~l~~~g~~~vvvt~g~~g~------~~~~~~~~~~~~~~~--~~~~dt~GaGDaf~ag~~~~l~~g~~~~~a~~ 227 (230)
.+++|...|.-.+.|+. -.|+ -+.-..-...+|-.+ +..-||.|+| +|++++....|.|+.++|-
T Consensus 723 lad~lV~agtHiL~IKD-MAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGag---VAsMlaca~AGADVVDvA~ 795 (1176)
T KOG0369|consen 723 LADKLVKAGTHILGIKD-MAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAG---VASMLACALAGADVVDVAV 795 (1176)
T ss_pred HHHHHHhccCeEEeehh-hhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHH---HHHHHHHHHcCCceeeeec
Confidence 55677777775555542 1232 111112222334333 3567899999 8888888889999888763
No 199
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=26.56 E-value=3.6e+02 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=23.7
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCCCe-EEEeCCC
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVL-LSYDPNV 113 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~~~ 113 (230)
..+.++|++.+-|--..... +.. ...+..++++|.+ +++||..
T Consensus 153 ~d~~~ad~il~~G~Np~~s~-p~~-~~~~~~a~~~GaklivvDPr~ 196 (501)
T cd02766 153 EDMVNADLIVIWGINPAATN-IHL-MRIIQEARKRGAKVVVIDPYR 196 (501)
T ss_pred HHHhcCCEEEEECCChhhhc-hhH-HHHHHHHHHCCCEEEEECCCC
Confidence 45678888766553222211 122 2334457788866 4678864
No 200
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.49 E-value=2e+02 Score=19.03 Aligned_cols=42 Identities=10% Similarity=-0.121 Sum_probs=26.9
Q ss_pred HHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 9 GHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
=+.+.+.+++.|+....- ....+.++...+.|++|....+.+
T Consensus 82 vd~~~~~l~~~G~~i~~~--p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 82 VDELVEKALAAGGKEFRE--PQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHCCCcccCC--cccCCceEEEEEECCCCCEEEEEE
Confidence 356789999999975421 112223345667889998876654
No 201
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=26.41 E-value=1e+02 Score=20.44 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=28.4
Q ss_pred HHHHHHHHHHCCCCccceEec--CCCcceEEEEEEecCCeeeEEEe
Q 044512 9 GHMLVNILKQNNVKTEGVCFD--NHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~~~--~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
=+.+.+.|++.|+.+...... ....-+..+.+.|++|.+..+++
T Consensus 71 l~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 116 (120)
T cd07252 71 LDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFW 116 (120)
T ss_pred HHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEe
Confidence 466789999999986532110 01112356677899999887775
No 202
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=26.20 E-value=1.9e+02 Score=18.79 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeE
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREF 49 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~ 49 (230)
.=+.+.+.+++.|+....... ...+..+.+.|++|.+..
T Consensus 86 ~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~DP~G~~iE 124 (126)
T cd08346 86 SLDAWRERLRAAGVPVSGVVD---HFGERSIYFEDPDGLRLE 124 (126)
T ss_pred HHHHHHHHHHHcCCcccceEe---ecceEEEEEECCCCCEEE
Confidence 346789999999998653221 133455566778887654
No 203
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=26.12 E-value=1.6e+02 Score=18.99 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=32.3
Q ss_pred cEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEEe
Q 044512 136 DLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYFT 184 (230)
Q Consensus 136 dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~~ 184 (230)
....++..|+..++|....+...+++.|...|. |...+..|-+...
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~Gl---I~r~~~~~~~~~n 89 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRI---IFRQGMMGIVGVN 89 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCC---eeeecCCceeecC
Confidence 345678999999999988877778888887774 3333335555443
No 204
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=25.92 E-value=1.9e+02 Score=18.61 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
.=+.+.+.+++.|+....... ....-+..+.+.|++|....+.+
T Consensus 70 ~v~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~DP~G~~ie~~~ 113 (117)
T cd07240 70 DLEALAAHLEAAGVAPEEASD-PEPGVGRGLRFQDPDGHLLELFV 113 (117)
T ss_pred HHHHHHHHHHHcCCceEEcCc-cCCCCceEEEEECCCCCEEEEEE
Confidence 346788899999998643221 12123466678889998887765
No 205
>PRK14566 triosephosphate isomerase; Provisional
Probab=25.90 E-value=78 Score=25.07 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=31.2
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEE
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt 174 (230)
.++++.++++|-+.++++.......-++...+.|...|++.
T Consensus 95 G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCv 135 (260)
T PRK14566 95 GCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCV 135 (260)
T ss_pred CCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEc
Confidence 69999999999999988776554445566667888666664
No 206
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=25.57 E-value=1.2e+02 Score=23.08 Aligned_cols=43 Identities=9% Similarity=-0.054 Sum_probs=32.6
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
-.|++.|+...+|....+..+|++.|...|. |.+.-.+|.++.
T Consensus 31 ~LPsE~eLa~~~~VSR~TvR~Al~~L~~eGl---i~r~~G~GtfV~ 73 (238)
T TIGR02325 31 YLPAEMQLAERFGVNRHTVRRAIAALVERGL---LRAEQGRGTFVA 73 (238)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEecCCEEEEC
Confidence 5689999999999999888999999988774 333333566554
No 207
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=25.56 E-value=2.8e+02 Score=20.45 Aligned_cols=19 Identities=5% Similarity=-0.095 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHCCCeEEE
Q 044512 91 SAHMAALKAAKDAGVLLSY 109 (230)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~ 109 (230)
+....+++.+.+.+.++++
T Consensus 35 dl~~~l~~~~~~~~~~vfl 53 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFL 53 (177)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 5556666666666655554
No 208
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=25.49 E-value=86 Score=24.53 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=30.7
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecC
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
.++++.++++|-+.++++.......-++...+.|...|++ -|+
T Consensus 84 G~~~viiGHSERR~~f~Etd~~i~~Kv~~al~~gl~pIvC-vGE 126 (244)
T PF00121_consen 84 GCKYVIIGHSERRQYFGETDEIINKKVKAALENGLTPIVC-VGE 126 (244)
T ss_dssp TESEEEESCHHHHHHST-BHHHHHHHHHHHHHTT-EEEEE-ESS
T ss_pred hCCEEEeccccccCccccccHHHHHHHHHHHHCCCEEEEE-ecc
Confidence 6899999999999999877655444455666788866665 455
No 209
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=25.45 E-value=2.3e+02 Score=24.17 Aligned_cols=64 Identities=5% Similarity=-0.001 Sum_probs=33.9
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCC---eEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHH
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGV---LLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDD 143 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~ 143 (230)
+++|++.++...+.... ..-..+.++.+++.+. ++++- ++..... .+.+..-++.+|+++.+.+
T Consensus 35 ~~aD~v~intC~v~~~a-~~~~~~~i~~~~~~~~~~~~vvvg-Gc~a~~~------~ee~~~~~~~vd~vvg~~~ 101 (429)
T TIGR00089 35 EEADVIIINTCAVREKA-EQKVRSRLGELAKLKKKNAKIVVA-GCLAQRE------GEELLKRIPEVDIVLGPQN 101 (429)
T ss_pred ccCCEEEEecceeechH-HHHHHHHHHHHHHhCcCCCEEEEE-CcccccC------HHHHHhhCCCCCEEECCCC
Confidence 46788888765444433 3344555566666554 55552 2221111 2333334567888777764
No 210
>PRK06739 pyruvate kinase; Validated
Probab=25.28 E-value=2.5e+02 Score=23.40 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=48.2
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGG 152 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~ 152 (230)
+.|++..|- +.+......+++++.......++++.-.- ....-+-+.+++..+|.+.+-+-++..=++..
T Consensus 178 ~vD~ia~SF--Vr~~~Dv~~~r~~l~~~g~~~~~IiaKIE--------~~~av~nl~eI~~~sDgimVARGDLgve~~~e 247 (352)
T PRK06739 178 DVDFIACSF--VRKPSHIKEIRDFIQQYKETSPNLIAKIE--------TMEAIENFQDICKEADGIMIARGDLGVELPYQ 247 (352)
T ss_pred CCCEEEECC--CCCHHHHHHHHHHHHHcCCCCCcEEEEEC--------CHHHHHHHHHHHHhcCEEEEECcccccccCHH
Confidence 567776653 23333333333333221112345665553 33456678888888898888777765433222
Q ss_pred Ccch--HHHHHHHHhcCccEEEEEe
Q 044512 153 DAEK--DDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 153 ~~~~--~~~~~~l~~~g~~~vvvt~ 175 (230)
.... ...++.....|...++.|+
T Consensus 248 ~vp~~Qk~Ii~~c~~~gkPvIvATq 272 (352)
T PRK06739 248 FIPLLQKMMIQECNRTNTYVITATQ 272 (352)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcc
Confidence 1111 1234455556776776664
No 211
>PRK06354 pyruvate kinase; Provisional
Probab=25.15 E-value=4e+02 Score=24.09 Aligned_cols=93 Identities=8% Similarity=0.030 Sum_probs=52.9
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKG 151 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 151 (230)
.+.|++..|- +.+......+.+.+........+++.-.- ..+.-+-+.+++..+|.+++..-++..=.+.
T Consensus 190 ~~vD~ia~SF--Vr~~~dv~~~r~~l~~~~~~~~~iiaKIE--------t~eav~nldeI~~~~DgImVaRGDLgve~g~ 259 (590)
T PRK06354 190 QGVDWIALSF--VRNPSDVLEIRELIEEHNGKHIPIIAKIE--------KQEAIDNIDAILELCDGLMVARGDLGVEIPA 259 (590)
T ss_pred cCCCEEEEcC--CCCHHHHHHHHHHHHHhcCCCceEEEEEC--------CHHHHHhHHHHHHhcCEEEEccchhhcccCc
Confidence 4567776653 33333333444444222123456666553 3445667788888899999999988766553
Q ss_pred CCcch--HHHHHHHHhcCccEEEEE
Q 044512 152 GDAEK--DDVVMSLWHDNLKLLLVT 174 (230)
Q Consensus 152 ~~~~~--~~~~~~l~~~g~~~vvvt 174 (230)
+.... ...++.....|...++.|
T Consensus 260 e~v~~~qk~ii~~~~~~gkpvI~AT 284 (590)
T PRK06354 260 EEVPLLQKRLIKKANRLGKPVITAT 284 (590)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 32221 223445556777666644
No 212
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=25.11 E-value=1.7e+02 Score=20.60 Aligned_cols=43 Identities=7% Similarity=-0.047 Sum_probs=27.3
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
+.+.+.|++.|+.+..-.........+.+.+.|++|.+..+.+
T Consensus 88 ~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~ 130 (154)
T cd07237 88 GRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGW 130 (154)
T ss_pred HHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEecc
Confidence 4678999999998642111111123455667889999887764
No 213
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.05 E-value=3.3e+02 Score=23.22 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=30.5
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHH-H-CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHH
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAK-D-AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDD 143 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~ 143 (230)
+++|++.++...+......+....+.+..+ + .+..+++ .+..... ..+.+.+.++.+|++.+|.+
T Consensus 26 ~~ADv~iiNTC~v~~~a~~k~~~~i~~~~~~~~~~~~ivv-~GC~a~~------~~~~~~~~~~~vd~v~g~~~ 92 (420)
T PRK14339 26 KEADLILINTCSVREKPVHKLFSEIGQFNKIKKEGAKIGV-CGCTASH------LGEEIIKRAPYVDFVLGARN 92 (420)
T ss_pred ccCCEEEEeccCccchHHHHHHHHHHHHHHhhCCCCeEEE-ECCcccc------CCHHHHhhCCCCcEEECCCC
Confidence 457777777655555444433333333222 2 2233333 3332111 12344444677777776644
No 214
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=25.04 E-value=2e+02 Score=24.43 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=36.8
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVS 141 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n 141 (230)
.+|++.+.+ ..+.+.+.++++.+++.|..+.+|.-... + ..+.+..++..+|++.+-
T Consensus 250 GAD~vTVH~-----ea~~~ti~~ai~~akk~GikvgVD~lnp~----t---p~e~i~~l~~~vD~Vllh 306 (391)
T PRK13307 250 TADAVVISG-----LAPISTIEKAIHEAQKTGIYSILDMLNVE----D---PVKLLESLKVKPDVVELH 306 (391)
T ss_pred CCCEEEEec-----cCCHHHHHHHHHHHHHcCCEEEEEEcCCC----C---HHHHHHHhhCCCCEEEEc
Confidence 567774443 23446788899999999999998754211 1 234555556678877544
No 215
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.04 E-value=1.4e+02 Score=18.33 Aligned_cols=21 Identities=0% Similarity=0.059 Sum_probs=17.5
Q ss_pred HHHHHHHHCCCCccceEecCC
Q 044512 11 MLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 11 ~i~~~l~~~gi~~~~i~~~~~ 31 (230)
.+++.+++.||+...|...+.
T Consensus 16 ~iL~~f~~~~inl~~IeSRP~ 36 (74)
T cd04929 16 KALKLFQELGINVVHIESRKS 36 (74)
T ss_pred HHHHHHHHCCCCEEEEEeccC
Confidence 478899999999998876664
No 216
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.01 E-value=2.8e+02 Score=20.20 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=9.5
Q ss_pred HHHHHHhcCccEEEEEecC
Q 044512 159 VVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 159 ~~~~l~~~g~~~vvvt~g~ 177 (230)
.++.+...++..|+|-+|.
T Consensus 93 i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 93 IINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHcCCCEEEEECCC
Confidence 4444545555555555443
No 217
>PTZ00333 triosephosphate isomerase; Provisional
Probab=24.99 E-value=1e+02 Score=24.32 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=32.6
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecC
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
.++++.++++|-+.++++.......-++...+.|...|++. |+
T Consensus 89 G~~~viiGHSERR~~f~Etd~~I~~Kv~~al~~gl~pIlCv-GE 131 (255)
T PTZ00333 89 GINWTILGHSERRQYFGETNEIVAQKVKNALENGLKVILCI-GE 131 (255)
T ss_pred CCCEEEECcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEc-CC
Confidence 69999999999999998887655444556667888666664 44
No 218
>PRK11402 DNA-binding transcriptional regulator FrlR; Provisional
Probab=24.93 E-value=1.3e+02 Score=23.22 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=33.4
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
-.|++.|+...+|....+..+|++.|.+.|. |...-.+|..+.
T Consensus 32 kLPsE~eLa~~~~VSR~TvR~Al~~L~~eGl---i~r~~G~GTfV~ 74 (241)
T PRK11402 32 QIPTENELCTQYNVSRITIRKAISDLVADGV---LIRWQGKGTFVQ 74 (241)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEecCceeEEC
Confidence 6799999999999998888999999988774 334434566653
No 219
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=24.93 E-value=1.4e+02 Score=18.80 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=24.1
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeee
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGERE 48 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~ 48 (230)
+.+.+.+++.|+...... ........+.+.|++|...
T Consensus 76 ~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 76 DAFRARLKAAGVPYTESD--VPGDGVRQLFVRDPDGNRI 112 (114)
T ss_pred HHHHHHHHHcCCCccccc--CCCCCccEEEEECCCCCEE
Confidence 567889999999865332 1123455566778887764
No 220
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.90 E-value=2.4e+02 Score=19.43 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=44.5
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccccccCchH
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSISLISEPC 89 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~ 89 (230)
-.+-+.|++.|+|+-.+..... + .++|-+.+.- . ++..+ ...-+.++++|. + -++
T Consensus 26 ~~VA~~L~e~g~dv~atDI~~~--~-------a~~g~~~v~D---D-----itnP~--~~iY~~A~lIYS----i--Rpp 80 (129)
T COG1255 26 LDVAKRLAERGFDVLATDINEK--T-------APEGLRFVVD---D-----ITNPN--ISIYEGADLIYS----I--RPP 80 (129)
T ss_pred HHHHHHHHHcCCcEEEEecccc--c-------CcccceEEEc---c-----CCCcc--HHHhhCccceee----c--CCC
Confidence 4567889999988765443322 1 1122222111 1 11111 234567777755 2 235
Q ss_pred HHHHHHHHHHHHHCCCeEEEeC
Q 044512 90 RSAHMAALKAAKDAGVLLSYDP 111 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~~~~d~ 111 (230)
++....+++.+++.|.+.++-|
T Consensus 81 pEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 81 PELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred HHHHHHHHHHHHhhCCCEEEEe
Confidence 6888889999999999888766
No 221
>PF10627 CsgE: Curli assembly protein CsgE; InterPro: IPR018900 Curli are a class highly aggregated surface fibres that are part of a complex extracellular matrix. They promote biofilm formation in addition to other activities. CsgE is a non-structural protein involved in curli biogenesis []. CsgE forms an outer membrane complex with the curli assembly proteins CsgG and CsgF [].
Probab=24.85 E-value=65 Score=21.63 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=28.4
Q ss_pred CCCCCChhHHHHHHHHHHCCCCccceEecCCCc---ceEEEEEEecCCeeeEEEe
Q 044512 1 MQFGDDEFGHMLVNILKQNNVKTEGVCFDNHAR---TALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 1 t~vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~---t~~~~v~~~~~g~~~~~~~ 52 (230)
|++|.|.| ..+-+.+++..++..+.....+.+ .|. .+.+..+++..+...
T Consensus 12 Tr~G~DFY-~~Fs~~~~~~~~~~~~~itI~E~ps~r~GS-~I~V~~~~~~iy~t~ 64 (107)
T PF10627_consen 12 TRFGHDFY-RYFSQKWRDIPITSGFNITIKERPSARWGS-LITVEVNNKVIYQTF 64 (107)
T ss_pred ccchHHHH-HHHHHHHhhcCCCCCceEEEEEEECCCCCC-EEEEEECCEEEEEEe
Confidence 78999955 666777777776666533333323 333 333334455555443
No 222
>PLN02271 serine hydroxymethyltransferase
Probab=24.80 E-value=1.1e+02 Score=27.36 Aligned_cols=43 Identities=23% Similarity=0.084 Sum_probs=27.3
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCC
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPL 117 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~ 117 (230)
.+.++|++++.......+. .++.+.|++.|+.+++|.....-+
T Consensus 297 ~rPKLII~g~Saypr~~D~---~~i~eIAdevGA~LmvD~AH~aGL 339 (586)
T PLN02271 297 FRPKILICGGSSYPREWDY---ARFRQIADKCGAVLMCDMAHISGL 339 (586)
T ss_pred cCCeEEEECchhccCcCCH---HHHHHHHHHcCCEEEEECcccccc
Confidence 3567777777444444433 445566778899999998754433
No 223
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.75 E-value=2e+02 Score=18.58 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=23.0
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeE
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREF 49 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~ 49 (230)
+.+.+.|++.|+........ .........+.|++|....
T Consensus 84 ~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~~DP~G~~iE 122 (125)
T cd08352 84 EAAVKHLKAKGVEVEPIRVD-EFTGKRFTFFYDPDGLPLE 122 (125)
T ss_pred HHHHHHHHHcCCcccccccc-CCCceEEEEEECCCCCEEE
Confidence 45789999999986543211 1122334445677776654
No 224
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=24.57 E-value=2e+02 Score=18.68 Aligned_cols=40 Identities=13% Similarity=-0.052 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeee
Q 044512 9 GHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGERE 48 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~ 48 (230)
-+.+.+.|++.|+....................|++|...
T Consensus 87 l~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 87 LDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLI 126 (128)
T ss_dssp HHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEE
T ss_pred HHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEE
Confidence 4677899999998876443222323333334778888764
No 225
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=24.44 E-value=1.9e+02 Score=23.75 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCCeEE-EeC-CCCCCCCCCHHHHHHHHHHHhhhCcEEee
Q 044512 92 AHMAALKAAKDAGVLLS-YDP-NVRLPLWPSQDAARDGIKSIWNHADLIKV 140 (230)
Q Consensus 92 ~~~~~l~~~~~~~~~~~-~d~-~~~~~~~~~~~~~~~~~~~~l~~~dil~~ 140 (230)
.-.++.+.++..|++++ +|+ .+....-.........+.++|..+|++++
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~l 203 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTL 203 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEE
Confidence 44677888899998865 688 32211000011123558899999999986
No 226
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=24.44 E-value=1.5e+02 Score=23.10 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEE
Q 044512 123 AARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLV 173 (230)
Q Consensus 123 ~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvv 173 (230)
...+.+.++-+.+|++++.-.--......+.....+.++.+.+.|+..|+-
T Consensus 172 ~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 172 RIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 344445555556777777655443333333333345677777788755443
No 227
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=24.35 E-value=90 Score=23.86 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHHHCC--CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCH
Q 044512 87 EPCRSAHMAALKAAKDAG--VLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSD 142 (230)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~ 142 (230)
++++...++++..++++. +|+.-|.+. ++....+.+.+|++.-..
T Consensus 107 Efs~R~~reLl~~a~~R~Ni~PIL~DA~~-----------P~~Y~~~Ve~VDviy~DV 153 (231)
T COG1889 107 EFSPRPMRELLDVAEKRPNIIPILEDARK-----------PEKYRHLVEKVDVIYQDV 153 (231)
T ss_pred EecchhHHHHHHHHHhCCCceeeecccCC-----------cHHhhhhcccccEEEEec
Confidence 455677788888887654 577778873 345566778888887643
No 228
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.24 E-value=93 Score=18.61 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHCCCCccceEec
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFD 29 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~ 29 (230)
++++.+++.|++.||+...+...
T Consensus 12 ~~C~ka~~~L~~~gi~~~~~di~ 34 (73)
T cd03027 12 EDCTAVRLFLREKGLPYVEINID 34 (73)
T ss_pred hhHHHHHHHHHHCCCceEEEECC
Confidence 57889999999999987755543
No 229
>PLN02743 nicotinamidase
Probab=24.24 E-value=3.1e+02 Score=21.40 Aligned_cols=19 Identities=0% Similarity=-0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHCCCeEEE
Q 044512 91 SAHMAALKAAKDAGVLLSY 109 (230)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~ 109 (230)
+.+.++++.+++.|+++++
T Consensus 61 ~~i~~Ll~~aR~~g~pVI~ 79 (239)
T PLN02743 61 DESARLAREFCERKWPVLA 79 (239)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 4568888999999999876
No 230
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=24.20 E-value=1.1e+02 Score=19.99 Aligned_cols=25 Identities=8% Similarity=0.103 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHCCCCccceEecCC
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~~~ 31 (230)
++++..+++|++.||+.+.+....+
T Consensus 10 ~~c~ka~~~L~~~~i~~~~idi~~~ 34 (105)
T cd02977 10 STSRKALAWLEEHGIEYEFIDYLKE 34 (105)
T ss_pred HHHHHHHHHHHHcCCCcEEEeeccC
Confidence 4678889999999999887765543
No 231
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=23.99 E-value=68 Score=24.35 Aligned_cols=93 Identities=17% Similarity=0.100 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEecCCCccccccccccCccccccccEEEEccccc
Q 044512 5 DDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFYRNPSADMLLKDSELNMGLIKQAKIFHYGSISL 84 (230)
Q Consensus 5 ~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~ 84 (230)
++..|..+.+.|.+.+..+..+.+........ .....|-..+.. + ..+.+.+ ...++..+.+++..- .
T Consensus 7 tG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~---~l~~~g~~vv~~------d-~~~~~~l-~~al~g~d~v~~~~~-~ 74 (233)
T PF05368_consen 7 TGNQGRSVVRALLSAGFSVRALVRDPSSDRAQ---QLQALGAEVVEA------D-YDDPESL-VAALKGVDAVFSVTP-P 74 (233)
T ss_dssp TSHHHHHHHHHHHHTTGCEEEEESSSHHHHHH---HHHHTTTEEEES--------TT-HHHH-HHHHTTCSEEEEESS-C
T ss_pred ccHHHHHHHHHHHhCCCCcEEEEeccchhhhh---hhhcccceEeec------c-cCCHHHH-HHHHcCCceEEeecC-c
Confidence 57789999999999888877655433100000 001123322211 1 0122222 456788998765432 2
Q ss_pred cCchHHHHHHHHHHHHHHCCCeEEE
Q 044512 85 ISEPCRSAHMAALKAAKDAGVLLSY 109 (230)
Q Consensus 85 ~~~~~~~~~~~~l~~~~~~~~~~~~ 109 (230)
..+...+....+++.+++.|++.++
T Consensus 75 ~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 75 SHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred chhhhhhhhhhHHHhhhccccceEE
Confidence 2244456778889999998987776
No 232
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=23.89 E-value=2.2e+02 Score=18.63 Aligned_cols=42 Identities=12% Similarity=-0.111 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcce-EEEEEEecCCeeeEEE
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTA-LAFVTLKKNGEREFMF 51 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~-~~~v~~~~~g~~~~~~ 51 (230)
.-+.+.+.|++.|+....-. ...+-+ ....+.|++|....++
T Consensus 79 dvd~~~~~l~~~G~~~~~~~--~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 79 EVDALYAELVGAGYPGHKEP--WDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHHCCCCcCCCC--ccCCCCCEEEEEECCCCCEEEEe
Confidence 35778899999998754211 111223 3456778888876543
No 233
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=23.88 E-value=3.5e+02 Score=21.01 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=36.3
Q ss_pred hhCcEEeeCHHHHhhhcC--------CCCc--ch---HHHHHHHHhcCccEEEEEecCCceEEEecC
Q 044512 133 NHADLIKVSDDEVNFLTK--------GGDA--EK---DDVVMSLWHDNLKLLLVTYGAKGCGYFTKK 186 (230)
Q Consensus 133 ~~~dil~~n~~E~~~l~~--------~~~~--~~---~~~~~~l~~~g~~~vvvt~g~~g~~~~~~~ 186 (230)
+.+++++|++++-...-. .... +. .+.+++|.+.|.+.|+.-|-+-+.++...+
T Consensus 141 ~gievvvPdd~~q~~v~~iIy~El~~G~~~~~sr~~~~~ii~~l~~~Gae~vIlGCTEi~lll~~~d 207 (230)
T COG1794 141 KGIEVVVPDDDEQAEVNRIIYEELCQGIVKDASRELYLAVIERLAERGAEGVILGCTEIPLLLSQDD 207 (230)
T ss_pred CCceEecCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHcCCCEEEEeccchheeecCCc
Confidence 358999999987654421 1111 11 234577888999999988888888776544
No 234
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=23.83 E-value=1.5e+02 Score=22.77 Aligned_cols=43 Identities=5% Similarity=-0.052 Sum_probs=32.7
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
-.|++.|+...+|....+..+|++.|.+.|. |...-.+|.++.
T Consensus 34 ~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGl---i~r~~G~GtfV~ 76 (241)
T PRK10079 34 YLPAEQQLAARYEVNRHTLRRAIDQLVEKGW---VQRRQGVGVLVL 76 (241)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEecCCEEEEe
Confidence 4689999999999999898999999988774 333333566654
No 235
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=23.77 E-value=1.9e+02 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCC
Q 044512 89 CRSAHMAALKAAKDAGVLLSYDPNV 113 (230)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~d~~~ 113 (230)
+.+...++++.++++++.++.|-.+
T Consensus 154 ~~~~~~~l~~~a~~~~~~ii~De~y 178 (350)
T TIGR03537 154 PRSYLKETIAMCREHGIILCSDECY 178 (350)
T ss_pred CHHHHHHHHHHHHHcCcEEEEeccc
Confidence 3455667777777777777766643
No 236
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=23.69 E-value=4.4e+02 Score=22.14 Aligned_cols=85 Identities=15% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHCCCe-EEEeCCCCCCCC-CCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcC
Q 044512 90 RSAHMAALKAAKDAGVL-LSYDPNVRLPLW-PSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDN 167 (230)
Q Consensus 90 ~~~~~~~l~~~~~~~~~-~~~d~~~~~~~~-~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g 167 (230)
.+.+.+.++.+.+.|+. +.+-.+..+... .-....-+.+.+-.+.+.+...+..|...+......+.++.+++|.+.|
T Consensus 92 ~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~l~~Lk~aG 171 (370)
T COG1060 92 PEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEVLKRLKEAG 171 (370)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHHHHHHHHcC
Confidence 35666666777777865 344333222211 1112222333333447777888888888888777777778888898887
Q ss_pred ccEEEEE
Q 044512 168 LKLLLVT 174 (230)
Q Consensus 168 ~~~vvvt 174 (230)
...+-.+
T Consensus 172 ldsmpg~ 178 (370)
T COG1060 172 LDSMPGG 178 (370)
T ss_pred CCcCcCc
Confidence 6665443
No 237
>PRK14999 histidine utilization repressor; Provisional
Probab=23.46 E-value=1.4e+02 Score=22.96 Aligned_cols=43 Identities=14% Similarity=-0.038 Sum_probs=33.0
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
-.|++.|+...+|....+..+|++.|...|. |...-.+|.++.
T Consensus 35 ~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGl---i~r~~GkGTfV~ 77 (241)
T PRK14999 35 RIPSEAELVAQYGFSRMTINRALRELTDEGW---LVRLQGVGTFVA 77 (241)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEecCcEEEEC
Confidence 4689999999999999888999999988774 333333566664
No 238
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=23.39 E-value=1.6e+02 Score=23.92 Aligned_cols=52 Identities=17% Similarity=0.019 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHH-CCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeC
Q 044512 90 RSAHMAALKAAKD-AGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVS 141 (230)
Q Consensus 90 ~~~~~~~l~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n 141 (230)
.+++...|..|++ ...|++.|.=.....+++.....+.+..+..++|++.|-
T Consensus 242 ~~Al~sfL~yArE~l~vpIS~DIYG~nGw~~t~~~~GQ~~e~ls~yVDvIsPM 294 (400)
T COG1306 242 SEALQSFLHYAREELEVPISADIYGQNGWSSTDMALGQFWEALSSYVDVISPM 294 (400)
T ss_pred HHHHHHHHHHHHHhcccceEEEeecccCccCCcchhhhhHHHHHhhhhhcccc
Confidence 4677888888877 458999998443333332222455666667799998873
No 239
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=23.38 E-value=2.6e+02 Score=19.95 Aligned_cols=41 Identities=12% Similarity=-0.107 Sum_probs=21.6
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNV 113 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~ 113 (230)
..|++.++...-.-+.....+.++.+..+.-|..+++|.+.
T Consensus 44 ~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 44 EFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred CeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 45666544321111223455566666656656667788874
No 240
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=23.34 E-value=1.5e+02 Score=22.65 Aligned_cols=44 Identities=11% Similarity=-0.036 Sum_probs=32.3
Q ss_pred EEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 137 LIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 137 il~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
=-.|++.|+...+|....+..+|++.|.+.|. |...-.+|..+.
T Consensus 22 ~~LPsE~eLa~~~gVSR~TVR~Al~~L~~eGl---i~r~~G~GTfV~ 65 (233)
T TIGR02404 22 DYLPSEHELMDQYGASRETVRKALNLLTEAGY---IQKIQGKGSIVL 65 (233)
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEeCCceEEEe
Confidence 35789999999999999898999999987663 333323455553
No 241
>PF05906 DUF865: Herpesvirus-7 repeat of unknown function (DUF865)
Probab=23.23 E-value=8.8 Score=18.93 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=11.9
Q ss_pred cccCCCCcchHHHHHH
Q 044512 197 KTIDTTGAGDAFVGSF 212 (230)
Q Consensus 197 ~~~dt~GaGDaf~ag~ 212 (230)
.++.|+|..=.|.|||
T Consensus 20 kpvkttgtavvfsagf 35 (35)
T PF05906_consen 20 KPVKTTGTAVVFSAGF 35 (35)
T ss_pred eeeeccceEEEeeccC
Confidence 5778888877777764
No 242
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=23.16 E-value=1.4e+02 Score=19.39 Aligned_cols=38 Identities=8% Similarity=-0.132 Sum_probs=23.2
Q ss_pred HHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeE
Q 044512 10 HMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREF 49 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~ 49 (230)
+.+.+.|++.|+....-. ... ..+....+.|++|.+..
T Consensus 82 d~~~~~l~~~G~~~~~~~-~~~-~~~~~~~~~DpdG~~iE 119 (121)
T cd07233 82 YAACERLEEMGVEVTKPP-GDG-GMKGIAFIKDPDGYWIE 119 (121)
T ss_pred HHHHHHHHHCCCEEeeCC-ccC-CCceEEEEECCCCCEEE
Confidence 557889999999865321 111 33344455677777654
No 243
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=23.07 E-value=3.8e+02 Score=21.16 Aligned_cols=76 Identities=8% Similarity=0.005 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhh------c--CCC--------
Q 044512 89 CRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFL------T--KGG-------- 152 (230)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l------~--~~~-------- 152 (230)
..+.+..+-+.+++.|++++-++-. ...+..+.+.+|++++--.++... . |.+
T Consensus 74 g~~gl~~l~~~~~~~Gl~~~t~~~d-----------~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~ 142 (260)
T TIGR01361 74 GEEGLKLLRRAADEHGLPVVTEVMD-----------PRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMG 142 (260)
T ss_pred HHHHHHHHHHHHHHhCCCEEEeeCC-----------hhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCC
Confidence 3566677777888899999887752 123333345578888655544422 1 111
Q ss_pred --CcchHHHHHHHHhcCccEEEEEe
Q 044512 153 --DAEKDDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 153 --~~~~~~~~~~l~~~g~~~vvvt~ 175 (230)
..+...+++.+.+.|.+.+++..
T Consensus 143 ~t~~e~~~Ave~i~~~Gn~~i~l~~ 167 (260)
T TIGR01361 143 NTIEEWLYAAEYILSSGNGNVILCE 167 (260)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEE
Confidence 11234567788888887766653
No 244
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=23.05 E-value=92 Score=20.54 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEE
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTL 41 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~ 41 (230)
.|+.|++.+.++||+..+--.... =+++.+.+
T Consensus 21 ~g~tiLe~a~~~gi~i~~~C~~g~--C~TC~v~v 52 (102)
T COG0633 21 EGETLLEAAERNGIPIEYACRGGA--CGTCRVKV 52 (102)
T ss_pred CCcHHHHHHHHCCCcceecCCCCc--cCccEEEE
Confidence 478999999999999776544433 33444444
No 245
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=23.05 E-value=2.1e+02 Score=19.88 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 12 LVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 12 i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
..+.|++.|+.+..-....+...+.++.+.|++|.+..+..
T Consensus 84 ~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 84 AGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred HHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 56789999998642111111112455666799999987764
No 246
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.03 E-value=1.5e+02 Score=19.06 Aligned_cols=21 Identities=0% Similarity=0.164 Sum_probs=17.3
Q ss_pred HHHHHHHHCCCCccceEecCC
Q 044512 11 MLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 11 ~i~~~l~~~gi~~~~i~~~~~ 31 (230)
.+++.+++.||+...|...+.
T Consensus 30 ~vL~~Fa~~~INLt~IeSRP~ 50 (90)
T cd04931 30 KVLRLFEEKDINLTHIESRPS 50 (90)
T ss_pred HHHHHHHHCCCCEEEEEeccC
Confidence 478899999999998876664
No 247
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=22.95 E-value=2.2e+02 Score=18.42 Aligned_cols=44 Identities=7% Similarity=-0.062 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCCccceE-ecCCCcceEEEEEEecCCeeeEEEe
Q 044512 9 GHMLVNILKQNNVKTEGVC-FDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~-~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
=+.+.+.|++.|+....-. .......++.+.+.|++|.+..+.+
T Consensus 72 l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~ 116 (120)
T cd08362 72 VDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSA 116 (120)
T ss_pred HHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEe
Confidence 4667889999999754211 0111123456678899998887664
No 248
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=22.93 E-value=1.9e+02 Score=17.71 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=25.2
Q ss_pred CCCChhHHHHHHHHHHCCCCccceEecCCCcceEEEEE
Q 044512 3 FGDDEFGHMLVNILKQNNVKTEGVCFDNHARTALAFVT 40 (230)
Q Consensus 3 vG~D~~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~ 40 (230)
||.-.+-..|++.|+++++.. +....+..|-..++.
T Consensus 12 vG~~g~d~~i~~~l~~~~v~i--i~K~~nANtit~yl~ 47 (71)
T cd04910 12 VGEVGYDLEILELLQRFKVSI--IAKDTNANTITHYLA 47 (71)
T ss_pred cCChhHHHHHHHHHHHcCCeE--EEEecCCCeEEEEEE
Confidence 566668899999999999975 444555445444443
No 249
>PRK09764 DNA-binding transcriptional repressor MngR; Provisional
Probab=22.51 E-value=1.6e+02 Score=22.74 Aligned_cols=43 Identities=7% Similarity=-0.023 Sum_probs=31.8
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
-.|++.|+...+|....+..+|++.|...|. |...-.+|..+.
T Consensus 28 ~LPsE~eL~~~~~VSR~TvR~Al~~L~~eGl---i~r~~G~GtfV~ 70 (240)
T PRK09764 28 ALPTESALQTEFGVSRVTVRQALRQLVEQQI---LESIQGSGTYVK 70 (240)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEecCceeEEc
Confidence 5689999999999998888899999987763 333223455553
No 250
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=22.41 E-value=2.5e+02 Score=18.95 Aligned_cols=44 Identities=11% Similarity=-0.043 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
.=+.+.+.|++.|+....-.. .....+..+.+.|++|.+..+..
T Consensus 71 dld~~~~~l~~~G~~~~~~~~-~~~~~~~~~~f~DPdG~~iEl~~ 114 (131)
T cd08363 71 EFDAFYTRLKEAGVNILPGRK-RDVRDRKSIYFTDPDGHKLEVHT 114 (131)
T ss_pred HHHHHHHHHHHcCCcccCCCc-cccCcceEEEEECCCCCEEEEec
Confidence 357788999999998531111 11124456677888888887764
No 251
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=22.35 E-value=1.6e+02 Score=22.42 Aligned_cols=43 Identities=14% Similarity=-0.047 Sum_probs=33.0
Q ss_pred EeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCCceEEE
Q 044512 138 IKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAKGCGYF 183 (230)
Q Consensus 138 l~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~g~~~~ 183 (230)
-.|++.|+...+|....+...|++.|.+.|. |...-.+|..+.
T Consensus 24 ~LPsE~eLa~~~~VSR~TVR~Al~~L~~eGl---i~r~~G~GtfV~ 66 (230)
T TIGR02018 24 RIPSEHELVAQYGCSRMTVNRALRELTDAGL---LERRQGVGTFVA 66 (230)
T ss_pred cCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC---EEEecCCEEEEc
Confidence 4689999999999999888999999988774 334334566664
No 252
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=22.35 E-value=1.2e+02 Score=24.81 Aligned_cols=51 Identities=22% Similarity=0.094 Sum_probs=33.8
Q ss_pred HHHHHHHHHH----HHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeC
Q 044512 91 SAHMAALKAA----KDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVS 141 (230)
Q Consensus 91 ~~~~~~l~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n 141 (230)
+++..++..+ ++.|.++..|.-.............+.+..+.+++|+|.|-
T Consensus 170 ~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPM 224 (316)
T PF13200_consen 170 DAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPM 224 (316)
T ss_pred HHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEec
Confidence 5556666555 44688999988544332222334567788889999999964
No 253
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=22.29 E-value=3.3e+02 Score=20.15 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHCCCeEEE-eCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHH
Q 044512 91 SAHMAALKAAKDAGVLLSY-DPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDD 143 (230)
Q Consensus 91 ~~~~~~l~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~ 143 (230)
|.--.++..+++.|+++++ |.....+-.............++...|.+..-.+
T Consensus 105 ElWPnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~ 158 (186)
T PF04413_consen 105 ELWPNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSE 158 (186)
T ss_dssp ---HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSH
T ss_pred ccCHHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCH
Confidence 5667888889999998764 4432211111112234567788888887776433
No 254
>PRK06444 prephenate dehydrogenase; Provisional
Probab=22.22 E-value=3.5e+02 Score=20.37 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.3
Q ss_pred CCC-ChhHHHHHHHHHHCCCCc
Q 044512 3 FGD-DEFGHMLVNILKQNNVKT 23 (230)
Q Consensus 3 vG~-D~~g~~i~~~l~~~gi~~ 23 (230)
||. +..|+++...+++.|..+
T Consensus 6 iG~~G~mG~~~~~~~~~~g~~v 27 (197)
T PRK06444 6 IGKNGRLGRVLCSILDDNGLGV 27 (197)
T ss_pred EecCCcHHHHHHHHHHhCCCEE
Confidence 344 889999999999999775
No 255
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=22.19 E-value=1.2e+02 Score=20.63 Aligned_cols=24 Identities=4% Similarity=0.011 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHCCCCccceEecCC
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~ 31 (230)
-.+..+++|+++||+...+.....
T Consensus 13 t~rka~~~L~~~gi~~~~~~y~~~ 36 (117)
T COG1393 13 TCRKALAWLEEHGIEYTFIDYLKT 36 (117)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecC
Confidence 357789999999999987766554
No 256
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=22.11 E-value=3.4e+02 Score=20.18 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=18.7
Q ss_pred hHHHHHHHHhcCccEEEEEecCC
Q 044512 156 KDDVVMSLWHDNLKLLLVTYGAK 178 (230)
Q Consensus 156 ~~~~~~~l~~~g~~~vvvt~g~~ 178 (230)
..++++.|++.|.+..|+|.+.+
T Consensus 87 ~~~~l~~L~~~g~~~~i~S~~~~ 109 (214)
T PRK13288 87 VYETLKTLKKQGYKLGIVTTKMR 109 (214)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCH
Confidence 35678888889999999998764
No 257
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=22.11 E-value=2.6e+02 Score=18.89 Aligned_cols=42 Identities=7% Similarity=-0.225 Sum_probs=25.6
Q ss_pred HHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 11 MLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 11 ~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
.+.+.|++.|+.+..-.........+.+.+.|++|....+..
T Consensus 78 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~ 119 (134)
T cd08360 78 LGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGA 119 (134)
T ss_pred HHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEc
Confidence 345799999998652111111122344677889998877664
No 258
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=22.07 E-value=4.9e+02 Score=22.82 Aligned_cols=92 Identities=7% Similarity=-0.009 Sum_probs=52.7
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHhhhcCCC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVNFLTKGG 152 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~ 152 (230)
+.|++.+|- +........+++.++.+. ....++.-.- ....-+-+.+++..+|.+++..-++..=.|.+
T Consensus 187 ~vD~ia~SF--V~~~~di~~~r~~l~~~~-~~~~iiakIE--------t~~av~nldeI~~~~DgImIargDLg~e~g~~ 255 (480)
T cd00288 187 GVDMIFASF--VRKASDVLEIREVLGEKG-KDIKIIAKIE--------NQEGVNNFDEILEASDGIMVARGDLGVEIPAE 255 (480)
T ss_pred CCCEEEECC--CCCHHHHHHHHHHHHhcC-CCceEEEEEC--------CHHHHHhHHHHHHhcCEEEECcchhhhhcChH
Confidence 467776653 334433344444443321 2345555443 34456777888888999999999887766633
Q ss_pred Ccch--HHHHHHHHhcCccEEEEEe
Q 044512 153 DAEK--DDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 153 ~~~~--~~~~~~l~~~g~~~vvvt~ 175 (230)
.... ...++...+.|...++.|+
T Consensus 256 ~v~~~qk~ii~~~~~~gkpvi~ATq 280 (480)
T cd00288 256 EVFLAQKMLIAKCNLAGKPVITATQ 280 (480)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEch
Confidence 2211 2234455567776766553
No 259
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.00 E-value=2.4e+02 Score=18.51 Aligned_cols=41 Identities=22% Similarity=0.146 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHCCCCccceEecCCCcceEEEEEEecCCeeeEEEe
Q 044512 8 FGHMLVNILKQNNVKTEGVCFDNHARTALAFVTLKKNGEREFMFY 52 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~~~~~t~~~~v~~~~~g~~~~~~~ 52 (230)
.=+.+.+.+++.|+.... ... ..+..+.+.|++|....+.+
T Consensus 69 dl~~~~~~l~~~G~~~~~---~~~-~~~~~~~f~DPdG~~ie~~~ 109 (121)
T cd07244 69 DFASLKEKLRQAGVKEWK---ENT-SEGDSFYFLDPDGHKLELHV 109 (121)
T ss_pred HHHHHHHHHHHcCCcccC---CCC-CCccEEEEECCCCCEEEEEe
Confidence 346778999999997531 111 23567778899999887764
No 260
>PLN02561 triosephosphate isomerase
Probab=21.91 E-value=1.2e+02 Score=23.91 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=31.8
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecC
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
.++++.++++|-+.++++.......-++...+.|...+++. |+
T Consensus 88 G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCv-GE 130 (253)
T PLN02561 88 GIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACV-GE 130 (253)
T ss_pred CCCEEEECcccccCccCCChHHHHHHHHHHHHCcCEEEEEc-CC
Confidence 69999999999999988876544444556667888666654 44
No 261
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=21.90 E-value=3.7e+02 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCC
Q 044512 122 DAARDGIKSIWNHADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAK 178 (230)
Q Consensus 122 ~~~~~~~~~~l~~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~ 178 (230)
..+.+....+.+++.-++++.++-..+ .+.+.---+.+++.+|||.|++
T Consensus 123 G~acq~y~~i~r~p~Glfisi~D~Ghi--------~~~l~nWp~~~V~~IvVTDGer 171 (582)
T KOG1257|consen 123 GLACQQYGLIFRRPQGLFISIKDKGHI--------KQVLKNWPERNVKAIVVTDGER 171 (582)
T ss_pred HHHHHHhhhhhccCceeEEEecccchH--------HHHHHhCCccceeEEEEeCCCc
Confidence 334444444555555555444443221 2222222347899999999874
No 262
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=21.77 E-value=3.9e+02 Score=21.83 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHHHHHHCCCCccce
Q 044512 12 LVNILKQNNVKTEGV 26 (230)
Q Consensus 12 i~~~l~~~gi~~~~i 26 (230)
.++.|.+.||+...+
T Consensus 68 aLD~ld~lGve~~~v 82 (320)
T COG4607 68 ALDTLDALGVEVVAV 82 (320)
T ss_pred hhhhHHHhCCccccc
Confidence 467888888886544
No 263
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=21.64 E-value=1.3e+02 Score=24.79 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=23.2
Q ss_pred cccccccEEEEccccccCchHHHHHHHHHHHHHHCCCe-EEEeCCC
Q 044512 69 GLIKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVL-LSYDPNV 113 (230)
Q Consensus 69 ~~l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~~~ 113 (230)
..+.++|++.+-|.-+....+. ....+..+++.|.+ +++||..
T Consensus 152 ~d~~~ad~il~~G~n~~~~~~~--~~~~~~~a~~~g~kvv~idp~~ 195 (374)
T cd00368 152 ADIENADLILLWGSNPAETHPV--LAARLRRAKKRGAKLIVIDPRR 195 (374)
T ss_pred HHHhhCCEEEEEcCChHHhChH--HHHHHHHHHHCCCeEEEEcCCC
Confidence 3456888876655323222222 23344555666765 4678864
No 264
>PRK15492 triosephosphate isomerase; Provisional
Probab=21.60 E-value=1.1e+02 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=31.8
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecC
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGA 177 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~ 177 (230)
.++++.++++|-+.++++.......-++...+.|...+++. |+
T Consensus 94 G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCi-GE 136 (260)
T PRK15492 94 GTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCV-GE 136 (260)
T ss_pred CCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEc-CC
Confidence 69999999999999998776544444556667888666654 44
No 265
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=21.59 E-value=4e+02 Score=23.48 Aligned_cols=32 Identities=0% Similarity=-0.191 Sum_probs=17.8
Q ss_pred CHHHHhhhcCCCCcchHHHHHHHHhcCccEEE
Q 044512 141 SDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLL 172 (230)
Q Consensus 141 n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vv 172 (230)
+.+++..++|.+....+++++.+.......++
T Consensus 259 t~e~~~~~tGv~~~~I~~lA~~~a~~~~~~i~ 290 (539)
T cd02762 259 TPEAYAPRCGVPAETIRRLAREFAAAPSAAVY 290 (539)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHhcCCceEEE
Confidence 34555666666665556666666554433333
No 266
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.58 E-value=4.7e+02 Score=21.61 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh-CcEEeeCHHHHh
Q 044512 88 PCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNH-ADLIKVSDDEVN 146 (230)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~-~dil~~n~~E~~ 146 (230)
.+.+....+.+.+++.|+.++-.|-. .+.+..+.+. ++++++--.|+.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd-----------~~svd~l~~~~v~~~KIaS~~~~ 121 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFD-----------LESADFLEDLGVPRFKIPSGEIT 121 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCC-----------HHHHHHHHhcCCCEEEECccccc
Confidence 35577888899999999988877642 1222333343 777776554443
No 267
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.58 E-value=3.7e+02 Score=23.24 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=33.4
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHH--HHHC-CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHH
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKA--AKDA-GVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDE 144 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E 144 (230)
+.+|++.++...+......+...++... .++. +.++++ .+.... ...+.+.+.++.+|+++++.+.
T Consensus 36 ~~ADv~iiNTC~v~~~A~~k~~~~~~~~~~~k~~~~~~ivv-~GC~a~------~~~~e~~~~~p~vd~v~g~~~~ 104 (455)
T PRK14335 36 ETCDVLIINTCSVRITAETRVFGRLGLFSSLKKKRAFFIIL-MGCMAE------RLHDEIQKEFPRIDYVVGTFAH 104 (455)
T ss_pred ccCCEEEEeccceechHHHHHHHHHHHHHHhhhCCCcEEEE-eccccc------chHHHHHhhCCCCcEEECCCCH
Confidence 4578777777666665555543333222 2322 233443 232211 1234555556778888766554
No 268
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=21.58 E-value=1.6e+02 Score=24.09 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=32.8
Q ss_pred cEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEEEecCC
Q 044512 136 DLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLVTYGAK 178 (230)
Q Consensus 136 dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvvt~g~~ 178 (230)
-+.++...|...|...+.....+.++.+.+.++..+|+|.|-.
T Consensus 51 riqi~G~~E~~yl~~l~~~~r~~~~~~l~~~~~P~iIvt~~~~ 93 (308)
T PRK05428 51 RVQVLGKTEISYLNQLSEEERKERLKKLFSLEPPCIIVTRGLE 93 (308)
T ss_pred eEEEECHHHHHHHHhCCHHHHHHHHHHHhCCCCCEEEEECcCC
Confidence 3566777888888766655556678888889999999998874
No 269
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=2.1e+02 Score=24.25 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=30.0
Q ss_pred cccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCC
Q 044512 73 QAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNV 113 (230)
Q Consensus 73 ~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~ 113 (230)
+.++|.++..+...+.-. -+.++.+.+++.|..+++|...
T Consensus 162 ~Tklvais~vSn~tG~~~-pv~~I~~la~~~ga~v~VDaaq 201 (405)
T COG0520 162 KTKLVALSHVSNVTGTVN-PVKEIAELAHEHGALVLVDAAQ 201 (405)
T ss_pred CceEEEEECccccccccc-hHHHHHHHHHHcCCEEEEECcc
Confidence 467888877665444332 3688899999999999999974
No 270
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=21.11 E-value=75 Score=22.18 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCCCcchHHHH-HHHHHHHcCCCcccccc
Q 044512 200 DTTGAGDAFVG-SFLVSVAKDANIFNVKF 227 (230)
Q Consensus 200 dt~GaGDaf~a-g~~~~l~~g~~~~~a~~ 227 (230)
-|.|||.+..+ .++.-|.+|+++++|.+
T Consensus 85 KTFGCGSAIASSS~aTewvkgkt~dea~k 113 (157)
T KOG3361|consen 85 KTFGCGSAIASSSLATEWVKGKTLDEALK 113 (157)
T ss_pred eecccchHhhhhHHHHHHHccccHHHHHh
Confidence 47999998765 46677899999999864
No 271
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=21.03 E-value=2.6e+02 Score=18.47 Aligned_cols=94 Identities=12% Similarity=0.052 Sum_probs=51.2
Q ss_pred EEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCC--CCC---HHHHHHHHHHHhhhCcEEeeCHHHHhhhcCC
Q 044512 77 FHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPL--WPS---QDAARDGIKSIWNHADLIKVSDDEVNFLTKG 151 (230)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~--~~~---~~~~~~~~~~~l~~~dil~~n~~E~~~l~~~ 151 (230)
||++| .+..+-......++.+.+++.+. .++.|...... ... .....+.-.+.++.+|+++.+.....
T Consensus 1 IYlAg-p~F~~~~~~~~~~~~~~L~~~g~-~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~----- 73 (113)
T PF05014_consen 1 IYLAG-PFFSEEQKARVERLREALEKNGF-EVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR----- 73 (113)
T ss_dssp EEEES-GGSSHHHHHHHHHHHHHHHTTTT-EEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS-----
T ss_pred CEEeC-CcCCHHHHHHHHHHHHHHHhCCC-EEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-----
Confidence 45666 34555556666777777777777 55566521110 011 22223333467789999998755422
Q ss_pred CCcchHHHHHH--HHhcCccEEEEEecCCc
Q 044512 152 GDAEKDDVVMS--LWHDNLKLLLVTYGAKG 179 (230)
Q Consensus 152 ~~~~~~~~~~~--l~~~g~~~vvvt~g~~g 179 (230)
.+...+.+. ....|.+.++++...+-
T Consensus 74 --~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 74 --PDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp ----HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred --CCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 122334432 33477777777766543
No 272
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=20.88 E-value=89 Score=17.28 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=16.5
Q ss_pred chHHHHHHHHHHHcC--CCcccccccC
Q 044512 205 GDAFVGSFLVSVAKD--ANIFNVKFRL 229 (230)
Q Consensus 205 GDaf~ag~~~~l~~g--~~~~~a~~~~ 229 (230)
|=.+.++|++++.+| -|++..|.++
T Consensus 14 ~~~~l~~f~Wavk~GQfdD~e~~a~ri 40 (45)
T PF03597_consen 14 GLIALAAFLWAVKSGQFDDLEGPAHRI 40 (45)
T ss_pred HHHHHHHHHHHHccCCCCCCcchHhhh
Confidence 345778888888877 4555555543
No 273
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=20.83 E-value=1.2e+02 Score=18.04 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHCCCCccceEecC
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFDN 30 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~~ 30 (230)
++.+..++.|++.||+...+....
T Consensus 10 p~C~~ak~~L~~~~i~~~~~di~~ 33 (72)
T TIGR02194 10 VQCKMTKKALEEHGIAFEEINIDE 33 (72)
T ss_pred HHHHHHHHHHHHCCCceEEEECCC
Confidence 678899999999999887665543
No 274
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=20.80 E-value=1.1e+02 Score=17.81 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHCCCCccceE
Q 044512 6 DEFGHMLVNILKQNNVKTEGVC 27 (230)
Q Consensus 6 D~~g~~i~~~l~~~gi~~~~i~ 27 (230)
..+...+...|+..||+++.+.
T Consensus 10 ~~~a~l~~~llr~~GIpar~v~ 31 (68)
T smart00460 10 GEFAALFVALLRSLGIPARVVS 31 (68)
T ss_pred HHHHHHHHHHHHHCCCCeEEEe
Confidence 5678888999999999998654
No 275
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=20.73 E-value=2.9e+02 Score=23.38 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=36.0
Q ss_pred ccccEEEEccccccCchHHHHHHHHHHHHHHCC--CeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHH
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAALKAAKDAG--VLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEV 145 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~ 145 (230)
.++|++.++...+... ......+.++.+++.+ .++++-- +-.... .+.+.. .+.+|+++.++.|.
T Consensus 32 ~~aD~v~intctv~~~-a~~~~~~~i~~~k~~~p~~~vvvgG-c~a~~~------~ee~~~-~~~vD~vv~~e~~~ 98 (414)
T TIGR01579 32 DKADVYIINTCTVTAK-ADSKARRAIRRARRQNPTAKIIVTG-CYAQSN------PKELAD-LKDVDLVLGNKEKD 98 (414)
T ss_pred ccCCEEEEeccccchH-HHHHHHHHHHHHHhhCCCcEEEEEC-CccccC------HHHHhc-CCCCcEEECCCCHH
Confidence 4688888887544432 2233456666666655 5566532 211111 233332 46788888887753
No 276
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=20.71 E-value=1.2e+02 Score=15.45 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=12.0
Q ss_pred HHHHHHHHHCCCCccc
Q 044512 10 HMLVNILKQNNVKTEG 25 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~ 25 (230)
..+.+.|++.|+++.+
T Consensus 7 ~eLk~~l~~~gL~~~G 22 (35)
T PF02037_consen 7 AELKEELKERGLSTSG 22 (35)
T ss_dssp HHHHHHHHHTTS-STS
T ss_pred HHHHHHHHHCCCCCCC
Confidence 4678899999998765
No 277
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=20.69 E-value=2.5e+02 Score=18.04 Aligned_cols=41 Identities=5% Similarity=-0.176 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCCccceEecCCCcce-EEEEEEecCCeeeEEE
Q 044512 9 GHMLVNILKQNNVKTEGVCFDNHARTA-LAFVTLKKNGEREFMF 51 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~i~~~~~~~t~-~~~v~~~~~g~~~~~~ 51 (230)
-+.+.+.|++.|+....- .. ...-+ ....+.|++|.+..+.
T Consensus 68 ~~~~~~~l~~~G~~~~~~-~~-~~~~g~~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 68 VDAALARAVAAGFAIVYG-PT-DEPWGVRRFFVRDPFGKLVNIL 109 (112)
T ss_pred HHHHHHHHHhcCCeEecC-Cc-cCCCceEEEEEECCCCCEEEEE
Confidence 366788999999885321 11 11222 4556778888887654
No 278
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=20.61 E-value=2.4e+02 Score=17.81 Aligned_cols=39 Identities=18% Similarity=0.063 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCccc-eEecCCCcceEEEEEEecCCeeeE
Q 044512 9 GHMLVNILKQNNVKTEG-VCFDNHARTALAFVTLKKNGEREF 49 (230)
Q Consensus 9 g~~i~~~l~~~gi~~~~-i~~~~~~~t~~~~v~~~~~g~~~~ 49 (230)
=+.+.+.+++.|+.... .... . .......+.|++|....
T Consensus 67 v~~~~~~l~~~G~~~~~~~~~~-~-~g~~~~~~~DPdG~~ie 106 (108)
T PF12681_consen 67 VDALYERLKELGAEIVTEPRDD-P-WGQRSFYFIDPDGNRIE 106 (108)
T ss_dssp HHHHHHHHHHTTSEEEEEEEEE-T-TSEEEEEEE-TTS-EEE
T ss_pred HHHHHHHHHHCCCeEeeCCEEc-C-CCeEEEEEECCCCCEEE
Confidence 35678899999988532 2221 1 23467777788887754
No 279
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=20.60 E-value=4e+02 Score=20.50 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=50.2
Q ss_pred cccccEEEEccccccCchHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCCHHHHHHHHHHHhhh--CcEEeeCHHHHhhh
Q 044512 71 IKQAKIFHYGSISLISEPCRSAHMAALKAAKDAGVLLSYDPNVRLPLWPSQDAARDGIKSIWNH--ADLIKVSDDEVNFL 148 (230)
Q Consensus 71 l~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~--~dil~~n~~E~~~l 148 (230)
+.++|++..-++ .++....+.+.+++.|.+.++-|+-.... -.++.+.+.+.. +++.++. -++.|
T Consensus 49 i~~~Dl~I~y~l------HPDl~~~l~~~~~e~g~kavIvp~~~~~~-----g~~~~lk~~~e~~gi~~~~P~--~~CsL 115 (217)
T PF02593_consen 49 IPEADLLIAYGL------HPDLTYELPEIAKEAGVKAVIVPSESPKP-----GLRRQLKKQLEEFGIEVEFPK--PFCSL 115 (217)
T ss_pred CCCCCEEEEecc------CchhHHHHHHHHHHcCCCEEEEecCCCcc-----chHHHHHHHHHhcCceeecCc--ccccc
Confidence 788998844332 34777899999998898877766643331 134566666654 5666664 34444
Q ss_pred cCCCCcchHHHHHHHHhcCccEEEEEe
Q 044512 149 TKGGDAEKDDVVMSLWHDNLKLLLVTY 175 (230)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~g~~~vvvt~ 175 (230)
-....+..++.++. .|-..+=|..
T Consensus 116 ~~~~~p~i~~F~~~---fGkP~~ei~v 139 (217)
T PF02593_consen 116 EENGNPQIDEFAEY---FGKPKVEIEV 139 (217)
T ss_pred CCCCChhHHHHHHH---hCCceEEEEe
Confidence 32222222223333 5655554543
No 280
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=20.52 E-value=2.9e+02 Score=22.83 Aligned_cols=41 Identities=12% Similarity=0.039 Sum_probs=25.4
Q ss_pred cccEEEEccccc--cCchHHHHHHHHHHHHHHCCCeEEEeCCC
Q 044512 73 QAKIFHYGSISL--ISEPCRSAHMAALKAAKDAGVLLSYDPNV 113 (230)
Q Consensus 73 ~~~~v~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~d~~~ 113 (230)
+.++++++.-.- ..-.+.+...++++.|++++..++.|-.+
T Consensus 164 ~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y 206 (383)
T TIGR03540 164 KAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAY 206 (383)
T ss_pred cceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecch
Confidence 456776652111 12233566788888888888888877654
No 281
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.51 E-value=1.2e+02 Score=20.29 Aligned_cols=25 Identities=8% Similarity=0.013 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHCCCCccceEecCC
Q 044512 7 EFGHMLVNILKQNNVKTEGVCFDNH 31 (230)
Q Consensus 7 ~~g~~i~~~l~~~gi~~~~i~~~~~ 31 (230)
++.+..+++|+++||+...+....+
T Consensus 10 ~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 10 STCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred HHHHHHHHHHHHcCCceEEecccCC
Confidence 4678889999999999887765543
No 282
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=20.40 E-value=64 Score=19.73 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=16.8
Q ss_pred CCChhHHHHHHHHHHCCCCcc
Q 044512 4 GDDEFGHMLVNILKQNNVKTE 24 (230)
Q Consensus 4 G~D~~g~~i~~~l~~~gi~~~ 24 (230)
|++..-+.++++|++.|+.++
T Consensus 54 g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 54 GDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp S-HHHHHHHHHHHHHTTEEEE
T ss_pred CCHHHHHHHHHHHHHCCCeEE
Confidence 566667899999999999865
No 283
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=20.28 E-value=1.4e+02 Score=23.99 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEeC
Q 044512 89 CRSAHMAALKAAKDAGVLLSYDP 111 (230)
Q Consensus 89 ~~~~~~~~l~~~~~~~~~~~~d~ 111 (230)
..+.++++|..|++. +-|+.|.
T Consensus 135 IKE~vR~~I~~A~kV-IAIVMD~ 156 (284)
T PF07894_consen 135 IKEVVRRMIQQAQKV-IAIVMDV 156 (284)
T ss_pred HHHHHHHHHHHhcce-eEEEeec
Confidence 356667777666553 4566665
No 284
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=20.23 E-value=1.5e+02 Score=15.98 Aligned_cols=22 Identities=5% Similarity=0.169 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHCCCCccceEec
Q 044512 8 FGHMLVNILKQNNVKTEGVCFD 29 (230)
Q Consensus 8 ~g~~i~~~l~~~gi~~~~i~~~ 29 (230)
....+++.|.+.+|+...+...
T Consensus 16 ~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 16 VAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred HHHHHHHHHHHCCCcEEEEEcC
Confidence 4567899999999999877543
No 285
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=20.18 E-value=2.3e+02 Score=24.57 Aligned_cols=53 Identities=11% Similarity=0.142 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHCCCeEEEeCCCCCC-----------CCCCHHHHHHHHHHHhhhCcEEeeCH
Q 044512 88 PCRSAHMAALKAAKDAGVLLSYDPNVRLP-----------LWPSQDAARDGIKSIWNHADLIKVSD 142 (230)
Q Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~d~~~~~~-----------~~~~~~~~~~~~~~~l~~~dil~~n~ 142 (230)
.+.+.+.++.+.|+++|+++++|...... ++. ....+...++..+.|.++++-
T Consensus 195 vs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~--~~i~ei~~e~~s~aD~~t~S~ 258 (460)
T PRK13237 195 VSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQD--KSIKEIVHEMFSYADGCTMSG 258 (460)
T ss_pred CCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCC--CcHhHHhhhccCcCcEEEEeC
Confidence 34567888889999999999999963211 111 123455667777888877663
No 286
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.12 E-value=1.3e+02 Score=15.28 Aligned_cols=17 Identities=29% Similarity=0.397 Sum_probs=13.5
Q ss_pred HHHHHHHHHCCCCccce
Q 044512 10 HMLVNILKQNNVKTEGV 26 (230)
Q Consensus 10 ~~i~~~l~~~gi~~~~i 26 (230)
..+.+.|++.|+++++.
T Consensus 7 ~~Lk~~l~~~gl~~~G~ 23 (35)
T smart00513 7 SELKDELKKRGLSTSGT 23 (35)
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 45788999999988764
No 287
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=20.09 E-value=1.1e+02 Score=19.32 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.9
Q ss_pred CCCCChhHHHHHHHHHHCCCCc
Q 044512 2 QFGDDEFGHMLVNILKQNNVKT 23 (230)
Q Consensus 2 ~vG~D~~g~~i~~~l~~~gi~~ 23 (230)
+=|.|..++.|++.-+++||.+
T Consensus 22 AKG~g~~A~~I~~~A~e~~VPi 43 (82)
T TIGR00789 22 ASGVGEVAERIIEIAKKHGIPI 43 (82)
T ss_pred EEeCCHHHHHHHHHHHHcCCCE
Confidence 3488999999999999999974
No 288
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.06 E-value=2.2e+02 Score=21.71 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=24.8
Q ss_pred hCcEEeeCHHHHhhhcCCCCcchHHHHHHHHhcCccEEEE
Q 044512 134 HADLIKVSDDEVNFLTKGGDAEKDDVVMSLWHDNLKLLLV 173 (230)
Q Consensus 134 ~~dil~~n~~E~~~l~~~~~~~~~~~~~~l~~~g~~~vvv 173 (230)
.++++++-++|-+.++|+...-..+-.+.-+..|.+.|++
T Consensus 86 G~~wVIlGHSERR~~fgEsd~~i~~K~~~Al~eGl~ViaC 125 (247)
T KOG1643|consen 86 GAEWVILGHSERRHVFGESDEFIADKTAHALAEGLKVIAC 125 (247)
T ss_pred CCCEEEecchhhhhhhCCchHHHHHHHHHHHHcCCeEEEE
Confidence 5777777788877777776654333334444566655444
No 289
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.01 E-value=4.9e+02 Score=22.39 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=37.2
Q ss_pred ccccEEEEccccccCchHHHHHHHHH--HHHHHC--CCeEEEeCCCCCCCCCCHHHHHHHHHHHhhhCcEEeeCHHHHh
Q 044512 72 KQAKIFHYGSISLISEPCRSAHMAAL--KAAKDA--GVLLSYDPNVRLPLWPSQDAARDGIKSIWNHADLIKVSDDEVN 146 (230)
Q Consensus 72 ~~~~~v~~~~~~~~~~~~~~~~~~~l--~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~dil~~n~~E~~ 146 (230)
+++|++.++...+......+....+. ...++. +.++++- ++.... ..+.+...++.+|+++.++.+..
T Consensus 38 ~~ADiiiiNTC~v~~~A~~~~~~~i~~~~~~k~~~p~~~ivv~-GC~a~~------~~~~~~~~~p~vd~vv~~~~~~~ 109 (446)
T PRK14337 38 EEARVFIVNTCSVRDKPEQKVYSLLGRIRHATKKNPDVFVAVG-GCVAQQ------IGSGFFSRFPQVRLVFGTDGIAM 109 (446)
T ss_pred CCCCEEEEeccCeecHHHHHHHHHHHHHHHHHHhCCCCEEEEE-CCcccc------ccHHHHhhCCCCcEEECCCCHHH
Confidence 46898888887666554444433322 222333 3445542 222111 13445555788999998887643
Done!