BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044513
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 480 bits (1236), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/452 (55%), Positives = 309/452 (68%), Gaps = 16/452 (3%)
Query: 17 TTRSWDFMGFSQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSA 76
TTRSWDF+GF V R + ES+IV+GV DTGIWPES SF+ GF PPP KW+G+C+ S
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 77 NFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTA 136
NF CN KI+GAR Y P D+ PRDT+GHG+HTASTAAG LVS A+LYG GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 137 RGCVPSARIAVYKICWSDGCXXXXXXXXXXXXXXXGVDIISLSLGSSNPHEYFNDSIAIG 196
RG VP ARIA YK+CW+DGC GVDIISLS+G +NP YF D+IAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 197 TFHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGIS 256
+FHA+ GILTS SAGN GP+ T +++PW +SVAAST+DRKF T+VQ+GN ++G+S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 257 INTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGP 316
INT+D N YPL+ G D N GF S+SRFC S++ NL+KGKIVVC+
Sbjct: 241 INTFD--NQYYPLVSGRDIPNT--GFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 296
Query: 317 FSA--GAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGN 374
F + GA G LM RD A S+PLP+S +D ND L YI S R+ ATI++ST
Sbjct: 297 FKSLDGAAGVLMT-SNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL 355
Query: 375 NTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVK---------GTS 425
N AP+V S SSRGPN T D++KPDIS PG++ILAAW V PV ++ GTS
Sbjct: 356 NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTS 415
Query: 426 MACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
M+CPH+TG A Y+K+++PTWSPAAIKSALMTT
Sbjct: 416 MSCPHITGIATYVKTYNPTWSPAAIKSALMTT 447
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 166/475 (34%), Positives = 240/475 (50%), Gaps = 51/475 (10%)
Query: 17 TTRSWDFMGF--SQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQV 74
TT + DF+ S + ++ D+++ V D+GIWPES SF G P +W+G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 75 SANFT---CNNKIVGARYYKSDGEFGPD-----DLPSPRDTDGHGSHTASTAAGNLVSMA 126
F CN K++GA Y+ + G D + S RDTDGHG+H AS AGN
Sbjct: 61 GTQFNASMCNRKLIGANYF-NKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGV 119
Query: 127 SLYGFSSGTARGCVPSARIAVYKICWSDGCXXXXXXXXXXXXXXXGVDIISLSLGSSNPH 186
S +G++ GTARG P AR+AVYK +++G GVD+IS+S G
Sbjct: 120 SHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIP 179
Query: 187 EYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQL 246
Y D+I+I +F AM G+L SASAGN GP ++ N +PW + VA+ DR F+ + L
Sbjct: 180 LY-EDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTL 238
Query: 247 GNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVV 306
GN G S+ P+IY ++ SS Q +N IV+
Sbjct: 239 GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDC------SSEELLSQVENPEN----TIVI 288
Query: 307 CDDLVSGEGPFSAGAVGALMQGQRRRD----------RAFSFPLPTSYVDTNDGSDILLY 356
CDD G FS + + + + + R+ +FP P V+ +G ++ Y
Sbjct: 289 CDD----NGDFS-DQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINY 343
Query: 357 INSTRNATATI-YRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV 415
+ ++ TATI ++ T + AP+V + S+RGP+ I KPDI APG+ ILAA+ P
Sbjct: 344 VKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPN 403
Query: 416 NPVSEV-------------KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
+ + GTSMA PH G AA +K+ HP WSP+AI+SA+MTT
Sbjct: 404 VFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTT 458
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 10/86 (11%)
Query: 380 IVGSLSSRGPNPITPDILKPDISAPGIDILAAWS-------PVNPV-SEVKGTSMACPHV 431
++ SSRGP + LKP++ APG I+AA + P+N + GT+MA PHV
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHV 365
Query: 432 TGAAAYIKSFHPTWSPAAIKSALMTT 457
G AA + HP+W+P +K+AL+ T
Sbjct: 366 AGIAALLLQAHPSWTPDKVKTALIET 391
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%)
Query: 103 SPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXXXXXX 162
+P D +GHG+H AS AAG + S+G +G P A++ K+ G
Sbjct: 173 TPYDDNGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDI 225
Query: 163 X-----XXXXXXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPS 217
G+ +I+LSLGSS + DS++ +A G++ +AGN GP+
Sbjct: 226 INGVDWAVQNKDKYGIKVINLSLGSSQSSD-GTDSLSQAVNNAWDAGLVVVVAAGNSGPN 284
Query: 218 RSTI 221
+ T+
Sbjct: 285 KYTV 288
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 153/393 (38%), Gaps = 54/393 (13%)
Query: 80 CNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGC 139
N+K+ Y DG+ D HG+H + +GN S G
Sbjct: 75 VNDKVAYYHDYSKDGKTAVDQ--------EHGTHVSGILSGNAPSETK----EPYRLEGA 122
Query: 140 VPSARIAVYKICWSDGCXXXXXXXXXX--XXXXXGVDIISLSLGSSNPHEYFN--DSIAI 195
+P A++ + ++ +G G +I++S G++ Y N D
Sbjct: 123 MPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNA-ALAYANLPDETKK 181
Query: 196 GTFHAMRNGILTSASAGND----GPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNI 251
+A G+ SAGND G +R + + + + + D + + +
Sbjct: 182 AFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQL 241
Query: 252 YEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLV 311
E ++ T D Q P++ ++R +D VKGKI + +
Sbjct: 242 TETATVKTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKD--VKGKIALIE--- 296
Query: 312 SGEGPFS--------AGAVGALMQGQRRRDRAFSFP----LPTSYVDTNDGSDILLYINS 359
G+ F AGAVG L+ + + P +P +++ DG +LL NS
Sbjct: 297 RGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG--LLLKDNS 354
Query: 360 TR----NATATIYRSTEGNNTLAPIVGSLSSRGPNPITPD-ILKPDISAPGIDILAAWSP 414
+ NAT + + + SS G +T D +KPDI+APG DIL++ +
Sbjct: 355 KKTITFNATPKVLPTASDTK-----LSRFSSWG---LTADGNIKPDIAAPGQDILSSVAN 406
Query: 415 VNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSP 447
N +++ GTSM+ P V G ++ + T P
Sbjct: 407 -NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYP 438
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLQNT 253
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLQNT 253
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIXSTL-PGNKYGAYSGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIXSTL-PGNKYGAYSGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GTSMA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALNNSIGVL---------GVAPSAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+DG G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGADGRGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDGPS 217
++GN G S
Sbjct: 150 ASGNSGAS 157
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GTSMA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GTSMA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G P+A + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALNNSIGVL---------GVAPNAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN G
Sbjct: 150 ASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GTSMA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G P+A + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALNNSIGVL---------GVAPNAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN G
Sbjct: 150 ASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GTSMA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALNNSIGVL---------GVAPSAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN G
Sbjct: 150 ASGNSG 155
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 179 SFSSVGP--------ELDVMAPGVSICSTL-PGNKYGAKSGTSMASPHVAGAAALILSKH 229
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 230 PNWTNTQVRSSLENT 244
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 179 SFSSVGP--------ELDVMAPGVSICSTL-PGNKYGAKSGTSMASPHVAGAAALILSKH 229
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 230 PNWTNTQVRSSLENT 244
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSICSTL-PGNKYGAKSGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSICSTL-PGNKYGAKSGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I++ P N GT+MA PHV GAAA I S H
Sbjct: 179 SFSSVGP--------ELDVMAPGVSIVSTL-PGNKYGAKSGTAMASPHVAGAAALILSKH 229
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 230 PNWTNTQVRSSLENT 244
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I++ P N GT+MA PHV GAAA I S H
Sbjct: 179 SFSSVGP--------ELDVMAPGVSIVSTL-PGNKYGAKSGTAMASPHVAGAAALILSKH 229
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 230 PNWTNTQVRSSLENT 244
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTSMA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAKSGTSMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
D+ APG+ I + P GTSMA PHV GAAA I S HPTW+ A ++ L +T
Sbjct: 197 DVMAPGVSIQSTL-PGGTYGAYNGTSMATPHVAGAAALILSKHPTWTNAQVRDRLEST 253
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 96 FGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG 155
F P + +D HG+H A T A S+ L G PSA + K+ S G
Sbjct: 50 FVPSETNPYQDGSSHGTHVAGTIAALNNSIGVL---------GVAPSASLYAVKVLDSTG 100
Query: 156 CXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTF--HAMRNGILTSASAG 212
+D+I++SLG S A+ T A+ +GI+ +A+AG
Sbjct: 101 SGQYSWIINGIEWAISNNMDVINMSLGGPT------GSTALKTVVDKAVSSGIVVAAAAG 154
Query: 213 NDGPSRSTIT 222
N+G S ST T
Sbjct: 155 NEGSSGSTST 164
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GT MA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTXMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWS--PVNPVSEVKGTSMACPHVTGAAAYIKS 440
S SS GP + D+ APG+ I WS P N GT MA PHV GAAA I S
Sbjct: 176 SFSSVGP--------ELDVMAPGVSI---WSTLPGNKYGAKSGTXMASPHVAGAAALILS 224
Query: 441 FHPTWSPAAIKSALMTT 457
HP W+ ++S+L T
Sbjct: 225 KHPNWTNTQVRSSLENT 241
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GT MA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTXMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GT MA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYSGTXMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GT MA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GT MA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G P+A + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALNNSIGVL---------GVAPNAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN G
Sbjct: 150 ASGNSG 155
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GT MA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALDNSIGVL---------GVAPSAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN+G
Sbjct: 150 ASGNEG 155
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GT MA PHV GAAA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNHLKNT 247
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALDNSIGVL---------GVAPSAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN G
Sbjct: 150 ASGNSG 155
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
DI APG+++ + + P + + + GTSMA PHV G AA +K +P+WS I++ L T
Sbjct: 191 DIVAPGVNVQSTY-PGSTYASLNGTSMATPHVAGVAALVKQKNPSWSNVQIRNHLKNT 247
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 91 KSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI 150
+ F P + PS +D +GHG+H A T A S+ L G PSA + K+
Sbjct: 44 RGGASFVPGE-PSTQDGNGHGTHVAGTIAALNNSIGVL---------GVAPSAELYAVKV 93
Query: 151 CWSDGCXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSA 209
+ G G+ + +LSLGS +P ++ A G+L A
Sbjct: 94 LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVA 149
Query: 210 SAGNDG 215
++GN G
Sbjct: 150 ASGNSG 155
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GT MA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYSGTXMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GT MA PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAKSGTXMASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GT MA PHV GAAA I S H
Sbjct: 179 SFSSVGP--------ELDVMAPGVSICSTL-PGNKYGAKSGTXMASPHVAGAAALILSKH 229
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 230 PNWTNTQVRSSLENT 244
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG+ + + + P N + + GTSMA PHV GAAA I S +PT S + +++ L +T
Sbjct: 196 EVMAPGVSVYSTY-PSNTYTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSST 252
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 16/135 (11%)
Query: 106 DTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXXXXXXXXX 165
D +GHG+H A T A ++ + G G P+ + K+ S G
Sbjct: 59 DGNGHGTHVAGTVA----ALDNTTGV-----LGVAPNVSLYAIKVLNSSGSGSYSAIVSG 109
Query: 166 XX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDG--PSRSTIT 222
G+D+I++SLG + ++ A +GI+ A+AGN G S++TI
Sbjct: 110 IEWATQNGLDVINMSLGGPSGSTALKQAVD----KAYASGIVVVAAAGNSGNSGSQNTIG 165
Query: 223 NVAPWFISVAASTID 237
A + +A +D
Sbjct: 166 YPAKYDSVIAVGAVD 180
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 381 VGSLSSRGP-NPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIK 439
V S + R P + + P++ D+ APG+ I + P + GTSMA PHV GAAA I
Sbjct: 171 VDSSNQRAPFSSVGPEL---DVMAPGVSICSTL-PGGKYGALSGTSMASPHVAGAAALIL 226
Query: 440 SFHPTWSPAAIKSALMTT 457
S HP W+ ++S+L T
Sbjct: 227 SKHPNWTNTQVRSSLENT 244
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query: 383 SLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
S SS GP + D+ APG+ I + P N GTS A PHV GAAA I S H
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL-PGNKYGAYNGTSXASPHVAGAAALILSKH 238
Query: 443 PTWSPAAIKSALMTT 457
P W+ ++S+L T
Sbjct: 239 PNWTNTQVRSSLENT 253
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
D+ APG+ I + P GT MA PHV GAAA I S HPTW+ A ++ L +T
Sbjct: 197 DVMAPGVSIQSTL-PGGTYGAYNGTXMATPHVAGAAALILSKHPTWTNAQVRDRLEST 253
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 96 FGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG 155
F P + +D HG+H A T A S+ L G PSA + K+ S G
Sbjct: 50 FVPSETNPYQDGSSHGTHVAGTIAALNNSIGVL---------GVAPSASLYAVKVLDSTG 100
Query: 156 CXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTF--HAMRNGILTSASAG 212
+D+I++SLG S A+ T A+ +GI+ +A+AG
Sbjct: 101 SGQYSWIINGIEWAISNNMDVINMSLGGPT------GSTALKTVVDKAVSSGIVVAAAAG 154
Query: 213 NDGPSRSTIT 222
N+G S ST T
Sbjct: 155 NEGSSGSTST 164
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
D+ APG+ I + P GT MA PHV GAAA I S HPTW+ A ++ L +T
Sbjct: 197 DVMAPGVSIQSTL-PGGTYGAYNGTCMATPHVAGAAALILSKHPTWTNAQVRDRLEST 253
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 18/130 (13%)
Query: 96 FGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG 155
F P + +D HG+H A T A S+ L G PSA + K+ S G
Sbjct: 50 FVPSETNPYQDGSSHGTHVAGTIAALNNSIGVL---------GVSPSASLYAVKVLDSTG 100
Query: 156 CXXXXXXXXXXX-XXXXGVDIISLSLGSSNPHEYFNDSIAIGTF--HAMRNGILTSASAG 212
+D+I++SLG S A+ T A+ +GI+ +A+AG
Sbjct: 101 SGQYSWIINGIEWAISNNMDVINMSLGGPT------GSTALKTVVDKAVSSGIVVAAAAG 154
Query: 213 NDGPSRSTIT 222
N+G S ST T
Sbjct: 155 NEGSSGSTST 164
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GTSMA PHV GAAA I S HP S + +++ L +T
Sbjct: 196 EVMAPGAGVYSTY-PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 252
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GTSMA PHV GAAA I S HP S + +++ L +T
Sbjct: 196 EVMAPGAGVYSTY-PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 252
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GTSMA PHV GAAA I S HP S + +++ L +T
Sbjct: 197 EVMAPGAGVYSTY-PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 253
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GTSMA PHV GAAA I S HP S + +++ L +T
Sbjct: 197 EVMAPGAGVYSTY-PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GTSMA PHV GAAA I S HP S + +++ L +T
Sbjct: 196 EVMAPGAGVYSTY-PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 252
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 381 VGSLSSRGP-NPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIK 439
V S + R P + + P++ D+ APG+ I + P + GT+MA PHV GAAA I
Sbjct: 171 VDSSNQRAPFSSVGPEL---DVMAPGVSICSTL-PGGKYGALSGTAMASPHVAGAAALIL 226
Query: 440 SFHPTWSPAAIKSALMTT 457
S HP W+ ++S+L T
Sbjct: 227 SKHPNWTNTQVRSSLENT 244
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GTSMA PHV GAAA I S HP S + +++ L +T
Sbjct: 196 EVMAPGAGVYSTY-PTNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSST 252
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
++ APG + + + P N + + GT MA PHV GAAA I S HP S + +++ L +T
Sbjct: 196 EVMAPGAGVYSTY-PTNTYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSST 252
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 85/394 (21%), Positives = 148/394 (37%), Gaps = 56/394 (14%)
Query: 80 CNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGC 139
N+K+ Y DG+ D HG+H + +GN S G
Sbjct: 66 VNDKVAYYHDYSKDGKTAVDQ--------EHGTHVSGILSGNAPSETK----EPYRLEGA 113
Query: 140 VPSARIAVYKICWSDGCXXXXXXXXXXXXXX--XGVDIISLSLGSSN-PHEYFNDSIAIG 196
P A++ + ++ +G G +I+ S G++ + D
Sbjct: 114 XPEAQLLLXRVEIVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKA 173
Query: 197 TFHAMRNGILTSASAGND----GPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIY 252
+A G+ SAGND G +R + + + + + D + + +
Sbjct: 174 FDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLT 233
Query: 253 EGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVS 312
E + + T D Q+ P++ ++R +D VKGKI + +
Sbjct: 234 ETVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKD--VKGKIALIE---R 288
Query: 313 GEGPFSAGA--------VGALMQGQRRRDRAFSFPLPT------SYVDTNDGSDILLYIN 358
G+ F VG L+ + D+ F LP +++ DG +LL N
Sbjct: 289 GDIDFKDKIAKAKKAGAVGVLIYDNQ--DKGFPIELPNVDQXPAAFISRKDG--LLLKDN 344
Query: 359 STR----NATATIYRSTEGNNTLAPIVGSLSSRGPNPITPD-ILKPDISAPGIDILAAWS 413
+ NAT + + G + SS G +T D +KPDI+APG DIL++ +
Sbjct: 345 PQKTITFNATPKVLPTASGTK-----LSRFSSWG---LTADGNIKPDIAAPGQDILSSVA 396
Query: 414 PVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSP 447
N +++ GTS + P V G ++ + T P
Sbjct: 397 N-NKYAKLSGTSXSAPLVAGIXGLLQKQYETQYP 429
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSE-VKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMT 456
DI APG I ++W N + + GTSMA PHV G AA +P SPA + + L T
Sbjct: 198 DIYAPGSSITSSWYTSNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKT 255
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSE-VKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALM 455
D+ APG I +AW + ++ + GTSMA PHV G AA +P+ +PA++ SA++
Sbjct: 196 DLFAPGASIPSAWYTSDTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAIL 252
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 358 NSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDI-LKPDISAPGIDILAAWSP-- 414
N +NA+ T T NN L+ VG+ +SRG + + D++APG DIL+
Sbjct: 206 NENQNASNTW--PTSCNNVLS--VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGT 261
Query: 415 VNPVSE----VKGTSMACPHVTGAAAYI----KSFHPTWSPAAIKSALMTT 457
PVS+ + GTSMA PHV+G AA + S + +PA +K L++T
Sbjct: 262 RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 358 NSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDI-LKPDISAPGIDILAAWSP-- 414
N +NA+ T T NN L+ VG+ +SRG + + D++APG DIL+
Sbjct: 206 NENQNASNTW--PTSCNNVLS--VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGT 261
Query: 415 VNPVSE----VKGTSMACPHVTGAAAYI----KSFHPTWSPAAIKSALMTT 457
PVS+ + GTSMA PHV+G AA + S + +PA +K L++T
Sbjct: 262 RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 358 NSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDI-LKPDISAPGIDILAAWSP-- 414
N +NA+ T T NN L+ VG+ +SRG + + D++APG DIL+
Sbjct: 206 NENQNASNTW--PTSCNNVLS--VGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGT 261
Query: 415 VNPVSE----VKGTSMACPHVTGAAAYI----KSFHPTWSPAAIKSALMTT 457
PVS+ + GTSMA PHV+G AA + S + +PA +K L++T
Sbjct: 262 RRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIK 451
DI PG DIL+ W + GTSMA PHV G AAY+ + T + +A +
Sbjct: 200 DIFGPGTDILSTWIG-GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 220 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 263
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 71 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 130
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 131 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 186
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 187 EGAPSPSYPAAYPEVIAVGA 206
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 218 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 261
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 128
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 129 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 184
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 185 EGAPSPSYPAAYPEVIAVGA 204
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 229 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 272
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGPD 139
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 140 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 195
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 196 EGAPSPSYPAAYPEVIAVGA 215
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 229 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 272
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 80 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 139
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 140 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 195
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 196 EGAPSPSYPAAYPEVIAVGA 215
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 298 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 341
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 208
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 209 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 264
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 265 EGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 295 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 338
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 146 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 205
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 206 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 261
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 262 EGAPSPSYPAAYPEVIAVGA 281
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 298 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 341
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 208
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 209 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 264
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 265 EGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 298 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 341
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 208
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 209 GVADKDGDGIIAGDPDADAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 264
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 265 EGAPSPSYPAAYPEVIAVGA 284
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT+MA PHV+G A I++ +
Sbjct: 298 QPEVSAPGVDILSTY-PDDSYETLMGTAMATPHVSGVVALIQAAY 341
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 149 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 208
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 209 GVADKDGDGIIAGDPDDAAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 264
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 265 EGAPSPSYPAAYPEVIAVGA 284
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT MA PHV+G A I++ +
Sbjct: 218 QPEVSAPGVDILSTY-PDDSYETLMGTXMATPHVSGVVALIQAAY 261
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 128
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 129 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 184
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 185 EGAPSPSYPAAYPEVIAVGA 204
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
+P++SAPG+DIL+ + P + + GT MA PHV+G A I++ +
Sbjct: 218 QPEVSAPGVDILSTY-PDDSYETLMGTCMATPHVSGVVALIQAAY 261
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 106 DTDGHGSHTASTAAG-----NLVSMA---SLYGFSSGTARGCVPSARIAV---YKICWSD 154
D +GHG+H T A +V +A +Y ARG + IA+ I D
Sbjct: 69 DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPD 128
Query: 155 GCXXXXXXXXXXXX-XXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGN 213
G ++IS+SLG Y D I A GI+ A++GN
Sbjct: 129 GVADKDGDGIIAGDPDDDAAEVISMSLGGPADDSYLYDMI----IQAYNAGIVIVAASGN 184
Query: 214 DGPSRSTITNVAPWFISVAA 233
+G + P I+V A
Sbjct: 185 EGAPSPSYPAAYPEVIAVGA 204
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 20/92 (21%)
Query: 381 VGSLSSRGPNPITPD-ILKPDISAPGIDILAAWSPVNPVSE-----------VKGTSMAC 428
V SSRGP T D +KPD+ APG IL+A S + P S + GTSMA
Sbjct: 202 VAQFSSRGP---TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMAT 258
Query: 429 PHVTGAAA-----YIKSFHPTWSPAAIKSALM 455
P V G A ++K+ T P+ +K+AL+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALI 290
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 106 DTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXX---XXXX 162
DT+GHG+H A + GN T +G P A + I S G
Sbjct: 64 DTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 163 XXXXXXXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTIT 222
G I + S G++ Y DS + + +N + +AGN+GP+ TI+
Sbjct: 113 TLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTIS 171
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIK 451
DI PG IL+ W + GTSMA PHV G AAY+ + T + +A +
Sbjct: 200 DIFGPGTSILSTWIG-GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIK 451
DI PG IL+ W + GTSMA PHV G AAY+ + T + +A +
Sbjct: 200 DIFGPGTSILSTWIG-GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 106 DTDGHGSHTASTAAGNLVS-MASLYGFSSGTARGCVPSARIAVYKIC------WSDGCXX 158
D +GHG+H A TA + S A +YG + P A + YK+ +SD
Sbjct: 67 DRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSDDIAA 118
Query: 159 XXXXXXXXXXXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSR 218
IIS+SLGSS + + ++ +A G+L A+AGN G S+
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNSGYSQ 174
Query: 219 STIT--NVAPWFISVAA 233
TI P I+VAA
Sbjct: 175 GTIGYPGALPNAIAVAA 191
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALM 455
+ISAPG + + W + + GT MA PHV+G AA I + +P+ S ++S L
Sbjct: 226 EISAPGSSVYSTWYN-GGYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQ 280
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 106 DTDGHGSHTASTAAGNLVS-MASLYGFSSGTARGCVPSARIAVYKIC------WSDGCXX 158
D +GHG+H A TA + S A +YG + P A + YK+ +SD
Sbjct: 67 DRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSDDIAA 118
Query: 159 XXXXXXXXXXXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSR 218
IIS+SLGSS + + ++ +A G+L A+AGN G S+
Sbjct: 119 AIRHAADQATATGTKTIISMSLGSSANNSLISSAVN----YAYSKGVLIVAAAGNSGYSQ 174
Query: 219 STIT--NVAPWFISVAA 233
TI P I+VAA
Sbjct: 175 GTIGYPGALPNAIAVAA 191
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALM 455
+ISAPG + + W + + GTSMA PHV+G AA I + +P+ S ++S L
Sbjct: 226 EISAPGSSVYSTWYN-GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQ 280
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
GTSMA PHV+G A + S+HP S + +++AL T
Sbjct: 366 NGTSMATPHVSGVATLVWSYHPECSASQVRAALNAT 401
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 381 VGSLSSRGPNPITPD--ILKPD--ISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAA 436
V SSRG D I K D ISAPG + + W + + GTSMA PH G AA
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD-GGYATISGTSMASPHAAGLAA 260
Query: 437 YIKSFHPTWSPAAIKSALMT 456
I + P S ++ L T
Sbjct: 261 KIWAQSPAASNVDVRGELQT 280
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 106 DTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG 155
D GHG+H A +A N + + +YG + P A + YK+ DG
Sbjct: 67 DRQGHGTHVAGSALANGGTGSGVYGVA--------PEADLWAYKVLGDDG 108
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Query: 381 VGSLSSRGPNPITPD-ILKPDISAPGIDILAAWSPVNPVSEV-----------KGTSMAC 428
V SSRGP T D +KPD+ APG IL+A S + P S GTS A
Sbjct: 202 VAQFSSRGP---TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXAT 258
Query: 429 PHVTGAAA-----YIKSFHPTWSPAAIKSALM 455
P V G A ++K+ T P+ +K+AL+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALI 290
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 15/120 (12%)
Query: 106 DTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXX---XXXX 162
DT+GHG+H A + GN T +G P A + I S G
Sbjct: 64 DTNGHGTHVAGSVLGN-----------GSTNKGMAPQANLVFQSIMDSGGGLGGLPSNLQ 112
Query: 163 XXXXXXXXXGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTIT 222
G I + S G++ Y DS + + +N + +AGN+GP+ TI+
Sbjct: 113 TLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY-VRKNDMTILFAAGNEGPNGGTIS 171
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH 442
DI APG +IL+ W + + GTSMA PH+ G AY+
Sbjct: 203 DIFAPGSNILSTWIG-GTTNTISGTSMATPHIVGLGAYLAGLE 244
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKS 440
D+ APG+DI++ + N + + GTSMA PHV G AA + S
Sbjct: 202 DVVAPGVDIVSTITG-NRYAYMSGTSMASPHVAGLAALLAS 241
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYI 438
DI APG I + W + + GTSMA PH+ G AAY+
Sbjct: 201 DIFAPGTSITSTWIG-GRTNTISGTSMATPHIAGLAAYL 238
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYI-----KSFHPTWSPAAIKSAL 454
DI APG+ I + + + +E+ GT+MA PHV GA A I +F + S I + L
Sbjct: 226 DIVAPGVGIKSTYLD-SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQL 284
Query: 455 M 455
+
Sbjct: 285 V 285
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 73/202 (36%), Gaps = 41/202 (20%)
Query: 65 PTKWRGSCQVSANFT-------------CNNKIVGARYYKSDGEFGPDDLPSPRDTDGHG 111
P WR S + + +I+G +D +G D+ + D +GHG
Sbjct: 31 PAVWRASAKGAGQIIGVIDTGXQVDHPDLAERIIGGVNLTTD--YGGDE-TNFSDNNGHG 87
Query: 112 SHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXXXXXXXXXXXXXX- 170
+H A T A A+ G SG G P A + + K DG
Sbjct: 88 THVAGTVA------AAETG--SGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVD 138
Query: 171 ------XGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITNV 224
+ II++SLG E +D++ +A+ N + +AGN+G R
Sbjct: 139 WRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAAGNEGDGREDTNEF 194
Query: 225 A-----PWFISVAASTIDRKFS 241
A I+V A D + S
Sbjct: 195 AYPAAYNEVIAVGAVDFDLRLS 216
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYI-----KSFHPTWSPAAIKSAL 454
DI APG+ I + + + +E+ GT+MA PHV GA A I +F + S I + L
Sbjct: 226 DIVAPGVGIKSTYLD-SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQL 284
Query: 455 M 455
+
Sbjct: 285 V 285
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 78/215 (36%), Gaps = 43/215 (20%)
Query: 53 SESFNGTGFGPPPTKWRGS--------------CQVSANFTCNNKIVGARYYKSDGEFGP 98
SE G P WR S CQV + +I+G +D +G
Sbjct: 19 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVD-HPDLAERIIGGVNLTTD--YGG 75
Query: 99 DDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXX 158
D+ + D +GHG+H A T A A+ G SG G P A + + K DG
Sbjct: 76 DE-TNFSDNNGHGTHVAGTVA------AAETG--SGVV-GVAPKADLFIIKALSGDGSGE 125
Query: 159 XXXXXXXXXXXX-------XGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASA 211
+ II++SLG E +D++ +A+ N + +A
Sbjct: 126 MGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVXAA 181
Query: 212 GNDGPSRSTITNVA-----PWFISVAASTIDRKFS 241
GN+G R A I+V A D + S
Sbjct: 182 GNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLS 216
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYI-----KSFHPTWSPAAIKSAL 454
DI APG+ I + + + +E+ GT+MA PHV GA A I +F + S I + L
Sbjct: 226 DIVAPGVGIKSTYLD-SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQL 284
Query: 455 M 455
+
Sbjct: 285 V 285
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 78/215 (36%), Gaps = 43/215 (20%)
Query: 53 SESFNGTGFGPPPTKWRGS--------------CQVSANFTCNNKIVGARYYKSDGEFGP 98
SE G P WR S CQV + +I+G +D +G
Sbjct: 19 SEVPMGVEIVEAPAVWRASAKGAGQIIGVIDTGCQVD-HPDLAERIIGGVNLTTD--YGG 75
Query: 99 DDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXX 158
D+ + D +GHG+H A T A A+ G SG G P A + + K DG
Sbjct: 76 DE-TNFSDNNGHGTHVAGTVA------AAETG--SGVV-GVAPKADLFIIKALSGDGSGE 125
Query: 159 XXXXXXXXXXXX-------XGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASA 211
+ II++SLG E +D++ +A+ N + +A
Sbjct: 126 MGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAA 181
Query: 212 GNDGPSRSTITNVA-----PWFISVAASTIDRKFS 241
GN+G R A I+V A D + S
Sbjct: 182 GNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLS 216
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYI-----KSFHPTWSPAAIKSAL 454
DI APG+ I + + + +E+ GT+MA PHV GA A I +F + S I + L
Sbjct: 208 DIVAPGVGIKSTYLD-SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQL 266
Query: 455 M 455
+
Sbjct: 267 V 267
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 75/203 (36%), Gaps = 43/203 (21%)
Query: 65 PTKWRGS--------------CQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGH 110
P WR S CQV + +I+G +D +G D+ + D +GH
Sbjct: 13 PAVWRASAKGAGQIIGVIDTGCQVD-HPDLAERIIGGVNLTTD--YGGDE-TNFSDNNGH 68
Query: 111 GSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCXXXXXXXXXXXXXX 170
G+H A T A A+ G SG G P A + + K DG
Sbjct: 69 GTHVAGTVA------AAETG--SGVV-GVAPKADLFIIKALSGDGSGEMGWIAKAIRYAV 119
Query: 171 -------XGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITN 223
+ II++SLG E +D++ +A+ N + +AGN+G R
Sbjct: 120 DWRGPKGEQMRIITMSLGGPTDSEELHDAVK----YAVSNNVSVVCAAGNEGDGREDTNE 175
Query: 224 VA-----PWFISVAASTIDRKFS 241
A I+V A D + S
Sbjct: 176 FAYPAAYNEVIAVGAVDFDLRLS 198
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKS 440
D++APG I + + P + + + GTSMA PHV G A + S
Sbjct: 201 DVAAPGSSIYSTY-PTSTYASLSGTSMATPHVAGVAGLLAS 240
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457
+GTSMA PHVTG A + P P I+ L T
Sbjct: 378 QGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENT 413
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSAL 454
D+ APG I +AW + GTSMA PHV G AA + +P + L
Sbjct: 196 DLFAPGSQIKSAWYD-GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLL 249
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 374 NNTLAPIVGSLSSRGPN-PITPDILKPDISAPGIDILAAWS-----PVNPVSEVK-GTSM 426
NN L+ VG+ + +G P + + ++APG +IL+ PV +K GTSM
Sbjct: 221 NNVLS--VGATTPKGKRAPFSNYGARVHLAAPGTNILSTIDVGQAGPVRSSYGMKAGTSM 278
Query: 427 ACPHVTGAAAYI----KSFHPTWSPAAIKSALMTT 457
A PHV+G AA + S T +P+ + L+ T
Sbjct: 279 AAPHVSGVAALVISAANSIGKTLTPSELSDILVRT 313
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 374 NNTLAPIVGSLSSRGPN-PITPDILKPDISAPGIDILAAWS-----PVNPVSEVK-GTSM 426
NN L+ VG+ + +G P + + ++APG +IL+ PV +K GTSM
Sbjct: 221 NNVLS--VGATTPKGKRAPFSNYGARVHLAAPGTNILSTIDVGQAGPVRSSYGMKAGTSM 278
Query: 427 ACPHVTGAAAYI----KSFHPTWSPAAIKSALMTT 457
A PHV+G AA + S T +P+ + L+ T
Sbjct: 279 AAPHVSGVAALVISAANSIGKTLTPSELSDILVRT 313
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 400 DISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKS 440
D++APG I + + P + + + GTSMA PHV G A + S
Sbjct: 201 DVAAPGSWIYSTY-PTSTYASLSGTSMATPHVAGVAGLLAS 240
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH----PTWSPAAIKSA 453
K I APG DIL A P + GTS A P V+G AA + S P +K+A
Sbjct: 198 KQGILAPGKDILGA-KPNGGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNA 256
Query: 454 LMTT 457
L+ +
Sbjct: 257 LLAS 260
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTW----SPAAIKSA 453
K I APG +IL A + GTSMA P +TG +A + S A+++A
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTA 324
Query: 454 LMTT 457
L+ T
Sbjct: 325 LLKT 328
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTW----SPAAIKSA 453
K I APG +IL A + GTSMA P +TG +A + S A+++A
Sbjct: 265 KEGILAPGEEILGAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTA 324
Query: 454 LMTT 457
L+ T
Sbjct: 325 LLKT 328
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTW----SPAAIKSA 453
K I APG +IL A + GTSMA P +TG +A + S A+++A
Sbjct: 247 KEGILAPGEEILGAQPCTEEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTA 306
Query: 454 LMTT 457
L+ T
Sbjct: 307 LLKT 310
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 95/249 (38%), Gaps = 54/249 (21%)
Query: 110 HGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKI------CWSDGCXXXXXXX 163
HG+H +S A+GN SS G P+A+I I G
Sbjct: 272 HGTHVSSIASGN---------HSSRDVDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXT 322
Query: 164 XXXXXXXXG--VDIISLSLGSSNPHEYFNDSIAIGTFH---AMRNGILTSASAGNDGPSR 218
G +D+I+ S G H +++S IG + G++ ASAGN GP+
Sbjct: 323 KVXELCRDGRRIDVINXSYGE---HANWSNSGRIGELXNEVVNKYGVVWVASAGNHGPAL 379
Query: 219 STITN----VAPWFISVAA----STIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLI 270
T+ P I V A + +++ + +L N+Y S + P I
Sbjct: 380 CTVGTPPDISQPSLIGVGAYVSPQXXEAEYAMREKLP-GNVYTWTSRD---------PCI 429
Query: 271 YGGDAANIS--GGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQG 328
GG + GG S +F S L G S P AGAV L+ G
Sbjct: 430 DGGQGVTVCAPGGAIASVPQFTXSKS---QLXNG--------TSXAAPHVAGAVALLISG 478
Query: 329 QRRRDRAFS 337
++++ +S
Sbjct: 479 LKQQNIEYS 487
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 423 GTSMACPHVTGAAAY----IKSFHPTWSPAAIKSALMTT 457
GTS A PHV GA A +K + +SP +IK A+ T
Sbjct: 460 GTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVT 498
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 401 ISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH----PTWSPAAIKSALMT 456
I APG DIL A P + GTS A P V+G AA + S T P ++ L+
Sbjct: 207 ILAPGEDILGA-KPGGGTERLSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQ 265
Query: 457 T 457
+
Sbjct: 266 S 266
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 401 ISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH----PTWSPAAIKSALMT 456
I APG DIL A P + GTS A P V+G AA + S T P ++ L+
Sbjct: 198 ILAPGEDILGA-KPGGGTERLSGTSFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQ 256
Query: 457 T 457
+
Sbjct: 257 S 257
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 401 ISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH----PTWSPAAIKSALMT 456
I APG DIL A P + GT+ A P V+G AA + S T P ++ L+
Sbjct: 188 ILAPGEDILGA-KPGGGTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQ 246
Query: 457 T 457
+
Sbjct: 247 S 247
>pdb|3FKQ|A Chain A, Crystal Structure Of Ntrc-Like Two-Domain Protein
(Rer070207001320) From Eubacterium Rectale At 2.10 A
Resolution
Length = 373
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 354 LLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITP 394
+ Y+N + T ++ EGN T + ++ SL SR N +
Sbjct: 175 VFYLNIEQCGTTDVFFQAEGNATXSDVIYSLKSRKANLLLK 215
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,163,308
Number of Sequences: 62578
Number of extensions: 614036
Number of successful extensions: 1481
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1235
Number of HSP's gapped (non-prelim): 204
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)