Query 044513
Match_columns 457
No_of_seqs 174 out of 1308
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 03:57:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07478 Peptidases_S8_CspA-lik 100.0 1.5E-53 3.2E-58 432.0 27.6 391 35-457 1-438 (455)
2 cd04852 Peptidases_S8_3 Peptid 100.0 2.4E-52 5.3E-57 406.7 28.2 282 13-457 1-305 (307)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 5.4E-50 1.2E-54 378.7 23.2 238 31-457 1-249 (255)
4 cd07497 Peptidases_S8_14 Pepti 100.0 2.8E-49 6E-54 382.1 22.8 277 37-457 1-310 (311)
5 PTZ00262 subtilisin-like prote 100.0 5.1E-48 1.1E-52 391.9 24.1 269 21-457 298-589 (639)
6 cd07476 Peptidases_S8_thiazoli 100.0 2E-47 4.2E-52 362.9 23.6 241 30-457 2-248 (267)
7 cd07483 Peptidases_S8_Subtilis 100.0 2.5E-47 5.3E-52 367.8 24.4 261 38-457 1-289 (291)
8 cd07475 Peptidases_S8_C5a_Pept 100.0 1.9E-46 4.2E-51 371.9 26.7 278 30-454 2-308 (346)
9 cd05562 Peptidases_S53_like Pe 100.0 1.4E-46 3.1E-51 357.9 23.5 246 34-457 1-249 (275)
10 cd07493 Peptidases_S8_9 Peptid 100.0 4E-46 8.7E-51 354.9 24.6 242 39-457 1-259 (261)
11 cd07481 Peptidases_S8_Bacillop 100.0 3.5E-46 7.6E-51 355.8 23.6 245 37-457 1-262 (264)
12 cd07485 Peptidases_S8_Fervidol 100.0 5.4E-46 1.2E-50 356.3 24.4 258 29-457 1-273 (273)
13 cd07487 Peptidases_S8_1 Peptid 100.0 7.4E-46 1.6E-50 354.1 24.5 247 37-457 1-262 (264)
14 cd07489 Peptidases_S8_5 Peptid 100.0 1.4E-45 3E-50 360.2 25.6 255 25-457 1-264 (312)
15 cd04857 Peptidases_S8_Tripepti 100.0 3E-45 6.5E-50 360.6 23.4 215 105-457 182-408 (412)
16 cd05561 Peptidases_S8_4 Peptid 100.0 2.5E-45 5.3E-50 343.8 21.7 218 40-457 1-223 (239)
17 cd04847 Peptidases_S8_Subtilis 100.0 1.9E-45 4.2E-50 355.7 21.5 249 41-457 2-289 (291)
18 cd07496 Peptidases_S8_13 Pepti 100.0 9.8E-45 2.1E-49 349.7 22.4 255 39-457 1-285 (285)
19 cd04842 Peptidases_S8_Kp43_pro 100.0 1.2E-44 2.7E-49 350.9 22.8 268 32-457 1-291 (293)
20 cd07490 Peptidases_S8_6 Peptid 100.0 2.9E-44 6.2E-49 341.1 23.8 248 39-457 1-252 (254)
21 cd07484 Peptidases_S8_Thermita 100.0 3E-44 6.6E-49 342.0 23.9 244 19-457 11-255 (260)
22 cd07474 Peptidases_S8_subtilis 100.0 8.5E-44 1.8E-48 345.4 27.0 256 37-457 1-268 (295)
23 cd04077 Peptidases_S8_PCSK9_Pr 100.0 3.1E-44 6.8E-49 340.9 22.9 228 30-457 17-252 (255)
24 cd07498 Peptidases_S8_15 Pepti 100.0 2.9E-44 6.4E-49 338.5 21.6 232 40-457 1-242 (242)
25 cd07494 Peptidases_S8_10 Pepti 100.0 7.9E-44 1.7E-48 343.3 22.4 161 22-237 6-175 (298)
26 cd07477 Peptidases_S8_Subtilis 100.0 1.1E-42 2.4E-47 325.1 22.8 226 39-457 1-229 (229)
27 cd04843 Peptidases_S8_11 Pepti 100.0 1E-42 2.3E-47 331.8 20.5 237 24-457 2-275 (277)
28 cd07473 Peptidases_S8_Subtilis 100.0 3.2E-42 7E-47 328.0 23.9 249 38-457 2-257 (259)
29 cd07482 Peptidases_S8_Lantibio 100.0 2.2E-42 4.8E-47 335.3 22.3 151 39-218 1-159 (294)
30 cd04059 Peptidases_S8_Protein_ 100.0 4.4E-42 9.5E-47 333.6 20.8 250 23-457 25-295 (297)
31 cd07491 Peptidases_S8_7 Peptid 100.0 4.2E-42 9.2E-47 322.4 19.8 214 37-441 2-229 (247)
32 cd07480 Peptidases_S8_12 Pepti 100.0 9.3E-42 2E-46 330.6 22.7 237 32-455 2-268 (297)
33 cd07492 Peptidases_S8_8 Peptid 100.0 7.4E-41 1.6E-45 311.1 22.5 219 39-457 1-220 (222)
34 cd04848 Peptidases_S8_Autotran 100.0 4.2E-40 9.1E-45 314.7 22.8 240 36-457 1-265 (267)
35 PF00082 Peptidase_S8: Subtila 100.0 2.7E-39 5.9E-44 311.8 16.9 245 41-457 1-254 (282)
36 KOG1153 Subtilisin-related pro 100.0 3.5E-38 7.6E-43 299.3 15.0 221 35-455 216-457 (501)
37 cd07488 Peptidases_S8_2 Peptid 100.0 3.2E-35 7E-40 274.9 15.9 193 104-457 33-246 (247)
38 KOG4266 Subtilisin kexin isozy 100.0 9.1E-35 2E-39 284.0 12.9 243 23-456 187-440 (1033)
39 cd00306 Peptidases_S8_S53 Pept 100.0 3.2E-33 7E-38 262.0 22.4 233 40-457 1-241 (241)
40 KOG1114 Tripeptidyl peptidase 100.0 2.5E-30 5.4E-35 263.3 14.1 214 107-457 309-533 (1304)
41 COG1404 AprE Subtilisin-like s 99.9 1.5E-23 3.2E-28 217.7 20.4 245 29-457 131-395 (508)
42 KOG3526 Subtilisin-like propro 99.9 3.2E-22 6.9E-27 186.4 8.9 172 29-233 152-335 (629)
43 cd04056 Peptidases_S53 Peptida 99.8 4.5E-18 9.7E-23 168.8 15.4 98 137-237 84-197 (361)
44 COG4934 Predicted protease [Po 98.9 3.2E-08 6.9E-13 107.1 14.1 94 137-233 289-395 (1174)
45 KOG3525 Subtilisin-like propro 98.8 3.9E-08 8.5E-13 98.9 11.7 156 29-218 24-188 (431)
46 cd02120 PA_subtilisin_like PA_ 98.2 8E-06 1.7E-10 68.5 9.5 115 244-366 2-125 (126)
47 cd02133 PA_C5a_like PA_C5a_lik 98.2 6.6E-06 1.4E-10 70.7 8.1 97 290-390 36-141 (143)
48 cd04816 PA_SaNapH_like PA_SaNa 97.5 0.00021 4.6E-09 59.5 6.3 80 287-366 29-121 (122)
49 cd02129 PA_hSPPL_like PA_hSPPL 97.0 0.00086 1.9E-08 55.1 4.5 74 287-360 30-115 (120)
50 cd02122 PA_GRAIL_like PA _GRAI 97.0 0.001 2.2E-08 56.5 5.0 81 286-366 43-137 (138)
51 PF02225 PA: PA domain; Inter 97.0 0.00053 1.2E-08 54.8 2.8 71 287-357 19-101 (101)
52 cd04818 PA_subtilisin_1 PA_sub 97.0 0.0018 3.8E-08 53.6 5.9 80 286-366 26-117 (118)
53 cd02130 PA_ScAPY_like PA_ScAPY 96.8 0.0037 8.1E-08 52.0 6.8 78 288-366 32-121 (122)
54 cd02125 PA_VSR PA_VSR: Proteas 96.8 0.0026 5.6E-08 53.2 5.5 80 287-366 22-126 (127)
55 cd00538 PA PA: Protease-associ 96.8 0.0032 6.9E-08 52.4 6.0 81 285-365 28-124 (126)
56 cd02127 PA_hPAP21_like PA_hPAP 96.7 0.0024 5.3E-08 52.6 4.8 80 287-367 21-116 (118)
57 cd02132 PA_GO-like PA_GO-like: 96.7 0.0024 5.1E-08 54.4 4.4 76 287-365 48-137 (139)
58 cd02126 PA_EDEM3_like PA_EDEM3 96.5 0.0034 7.4E-08 52.5 4.3 77 287-364 27-123 (126)
59 cd02124 PA_PoS1_like PA_PoS1_l 96.4 0.0047 1E-07 51.8 4.8 80 285-365 39-127 (129)
60 cd04813 PA_1 PA_1: Protease-as 96.2 0.0055 1.2E-07 50.4 3.7 73 286-360 26-112 (117)
61 cd04817 PA_VapT_like PA_VapT_l 95.7 0.012 2.5E-07 49.9 3.5 66 295-360 50-134 (139)
62 cd04819 PA_2 PA_2: Protease-as 95.5 0.11 2.3E-06 43.5 8.8 65 296-360 39-120 (127)
63 cd02123 PA_C_RZF_like PA_C-RZF 95.3 0.017 3.6E-07 50.1 3.6 76 287-362 50-142 (153)
64 cd04815 PA_M28_2 PA_M28_2: Pro 90.9 0.76 1.6E-05 38.8 6.4 68 297-364 35-131 (134)
65 KOG1114 Tripeptidyl peptidase 87.6 0.4 8.7E-06 51.8 2.8 25 33-57 76-100 (1304)
66 cd04822 PA_M28_1_3 PA_M28_1_3: 84.0 1.1 2.5E-05 38.4 3.3 48 288-335 34-104 (151)
67 cd04820 PA_M28_1_1 PA_M28_1_1: 81.8 1.2 2.5E-05 37.7 2.5 43 288-330 36-95 (137)
68 cd04814 PA_M28_1 PA_M28_1: Pro 76.4 2 4.3E-05 36.6 2.3 43 289-331 35-100 (142)
69 KOG2442 Uncharacterized conser 75.7 7.2 0.00016 39.5 6.2 74 297-370 91-178 (541)
70 cd02128 PA_TfR PA_TfR: Proteas 70.5 2.4 5.2E-05 37.6 1.5 34 297-330 51-89 (183)
71 cd02131 PA_hNAALADL2_like PA_h 68.1 2.4 5.2E-05 36.2 0.9 36 298-333 37-77 (153)
72 PF02845 CUE: CUE domain; Int 62.1 7.5 0.00016 25.3 2.3 22 435-456 5-26 (42)
73 PRK15019 CsdA-binding activato 58.8 10 0.00022 32.5 3.0 30 422-452 80-109 (147)
74 TIGR03391 FeS_syn_CsdE cystein 58.7 10 0.00022 32.1 3.0 31 422-453 75-105 (138)
75 PRK09296 cysteine desufuration 55.3 12 0.00027 31.6 3.0 30 422-452 70-99 (138)
76 smart00546 CUE Domain that may 55.1 18 0.00039 23.5 3.2 22 434-455 5-26 (43)
77 cd02121 PA_GCPII_like PA_GCPII 54.9 9.5 0.00021 35.0 2.4 36 297-332 67-107 (220)
78 COG2166 sufE Cysteine desulfur 53.9 13 0.00028 31.6 2.8 25 428-452 80-104 (144)
79 PF13940 Ldr_toxin: Toxin Ldr, 52.8 14 0.0003 22.6 2.0 13 426-438 14-26 (35)
80 PF02657 SufE: Fe-S metabolism 51.2 16 0.00034 30.4 3.0 31 422-453 61-91 (125)
81 PF04255 DUF433: Protein of un 49.5 15 0.00033 25.6 2.2 34 422-455 15-54 (56)
82 PF13955 Fst_toxin: Toxin Fst, 41.8 35 0.00077 18.6 2.3 18 424-441 2-19 (21)
83 PF08821 CGGC: CGGC domain; I 33.7 2.5E+02 0.0054 22.5 7.6 67 141-209 36-104 (107)
84 COG0065 LeuC 3-isopropylmalate 32.9 59 0.0013 32.4 4.1 56 379-438 355-413 (423)
85 PF02601 Exonuc_VII_L: Exonucl 28.7 1.8E+02 0.0039 28.2 6.9 75 140-217 39-120 (319)
86 cd04821 PA_M28_1_2 PA_M28_1_2: 28.6 52 0.0011 28.5 2.7 37 294-330 42-102 (157)
87 KOG4628 Predicted E3 ubiquitin 28.5 1.1E+02 0.0024 30.1 5.2 73 288-360 63-150 (348)
88 PF08260 Kinin: Insect kinin p 23.8 38 0.00083 13.7 0.5 6 383-388 3-8 (8)
89 COG2442 Uncharacterized conser 22.4 83 0.0018 23.8 2.5 34 422-455 27-66 (79)
90 COG1570 XseA Exonuclease VII, 21.9 2.2E+02 0.0048 29.1 6.0 75 140-217 160-238 (440)
91 PF07305 DUF1454: Protein of u 21.4 90 0.002 27.7 2.8 25 431-455 125-149 (200)
92 KOG2018 Predicted dinucleotide 20.8 2.4E+02 0.0051 27.5 5.6 76 136-212 137-245 (430)
93 PF00292 PAX: 'Paired box' dom 20.1 1E+02 0.0022 25.6 2.7 32 425-456 74-105 (125)
No 1
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=1.5e-53 Score=432.04 Aligned_cols=391 Identities=22% Similarity=0.259 Sum_probs=272.3
Q ss_pred CCCCCeEEEEeecccCCCCCCCCC-CCCCCCCCccccccccCCccccccceeEEEeccCC------CCCCCCCCCCCCCC
Q 044513 35 TEESDIVIGVFDTGIWPESESFNG-TGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSD------GEFGPDDLPSPRDT 107 (457)
Q Consensus 35 ~~G~gv~V~ViDtGid~~Hp~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~d~ 107 (457)
++|+||+|||||||||+.||+|++ ++.+|+.+.|||.+..+.... ...++..|..+ ....+.+..+..|.
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~ 77 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG---GYYGGGEYTEEIINAALASDNPYDIVPSRDE 77 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc---cccCceEEeHHHHHHHHhcCCccccCcCCCC
Confidence 589999999999999999999986 578999999999988764432 11222222221 11334444567789
Q ss_pred CCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-----------CCHHHHHHHHHHHHHC-----
Q 044513 108 DGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-----------CDDADILAAFDDAIAD----- 171 (457)
Q Consensus 108 ~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-----------~~~~~i~~ai~~a~~~----- 171 (457)
.||||||||||||++.++.. +.||||+|+|+.+|++...+ ....+++.||+|+++.
T Consensus 78 ~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~ 149 (455)
T cd07478 78 NGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELN 149 (455)
T ss_pred CCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999765322 38999999999999988765 4678999999998764
Q ss_pred CCcEEEecCCCCCCCCCccchHHHHHHHhhhC-CcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCc
Q 044513 172 GVDIISLSLGSSNPHEYFNDSIAIGTFHAMRN-GILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNN 250 (457)
Q Consensus 172 ~~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~-gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~ 250 (457)
.++|||||||...+.+...+.++++++.+..+ |+++|+||||+|....|+..... .........+.++.++
T Consensus 150 ~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~ 221 (455)
T cd07478 150 KPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGE 221 (455)
T ss_pred CCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCC
Confidence 46899999999888899999999999988775 99999999999987655543210 0011111223333322
Q ss_pred eeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCc-CcccccccCCcEEEEecCC----Cc------cccccC
Q 044513 251 IYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQ-DSLDQNLVKGKIVVCDDLV----SG------EGPFSA 319 (457)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~----~~------~~~~~~ 319 (457)
.+..++.|...-..+.+-... ++||.+....-.-.. ..+.+...++++.+..+.. .. -.....
T Consensus 222 --~~~~~eiW~~~~d~~~v~i~s----P~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~ 295 (455)
T cd07478 222 --KGFNLEIWGDFPDRFSVSIIS----PSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKP 295 (455)
T ss_pred --cceEEEEecCCCCEEEEEEEC----CCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCc
Confidence 233344444333333322222 223322211111111 1122333344444432211 00 123567
Q ss_pred CceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeee----cccc--CCCCCccccccCCCCCCCC
Q 044513 320 GAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRS----TEGN--NTLAPIVGSLSSRGPNPIT 393 (457)
Q Consensus 320 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~Ss~Gp~~~~ 393 (457)
|.|.+.++........++.|+|...+...+.+ |+.++...++++... .+++ +...+.++.||++||+.
T Consensus 296 GiW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~----f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~-- 369 (455)
T cd07478 296 GIWKIRLTGVSITDGRFDAWLPSRGLLSENTR----FLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR-- 369 (455)
T ss_pred cceEEEEEeccCCCceEEEEecCcCcCCCCCE----eecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--
Confidence 99999999999999999999998877766554 555555555555211 1333 34455799999999999
Q ss_pred CCCCCCceeecCccEEeeecCCCCCccCCcchhhHHHHHHHHHHHHHhC------CCCCHHHHHHHHhcC
Q 044513 394 PDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFH------PTWSPAAIKSALMTT 457 (457)
Q Consensus 394 ~~~~KPdi~APG~~i~s~~~~~~~~~~~sGTSmAaP~VAG~aALl~~~~------P~lt~~~i~~~L~~T 457 (457)
++++||||+|||.+|+++.+. +.|..++|||||||+|||++|||+|.+ |.|++++||++|++|
T Consensus 370 ~~~~kpdi~APG~~i~s~~~~-~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~t 438 (455)
T cd07478 370 DGRIKPDIAAPGVNILTASPG-GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRG 438 (455)
T ss_pred CCCcCceEEecCCCEEEeecC-CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHh
Confidence 999999999999999999986 467788999999999999999999975 567999999999875
No 2
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-52 Score=406.73 Aligned_cols=282 Identities=58% Similarity=0.977 Sum_probs=243.1
Q ss_pred ccccccCcccccCCchhcc-----cCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccc---cccce
Q 044513 13 RKLHTTRSWDFMGFSQQVE-----RSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFT---CNNKI 84 (457)
Q Consensus 13 ~~~~~~~s~~~~~~~~~~~-----~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~i 84 (457)
++|+.++++++++++ ..| .++++|+||+|||||||||++||+|.+....+++..|++.+..+..+. +++|+
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki 79 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKL 79 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeE
Confidence 478899999999999 444 469999999999999999999999999999999999999999888775 89999
Q ss_pred eEEEeccCCCCC-----CCCCCCCCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecC-CCCCH
Q 044513 85 VGARYYKSDGEF-----GPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWS-DGCDD 158 (457)
Q Consensus 85 ~~~~~~~~~~~~-----~~~~~~~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~-~~~~~ 158 (457)
++.++|...... .+.....+.|..+|||||||||+|+...+....|...+.+.|+||+|+|+.+|++.. .....
T Consensus 80 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~ 159 (307)
T cd04852 80 IGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFG 159 (307)
T ss_pred EEEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccH
Confidence 999999876431 233345677889999999999999987766666666667799999999999999987 44688
Q ss_pred HHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCCccCCCCCCceEEEeeecCc
Q 044513 159 ADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTIDR 238 (457)
Q Consensus 159 ~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~ 238 (457)
+++++++++|++++++|||||||.... ....+.+..++.++.++|++||+||||+|......++..+|+++||+.+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 899999999999999999999998743 4456778888888899999999999999987778888889999998621
Q ss_pred eeeeeEEeCCCceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCcccccc
Q 044513 239 KFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFS 318 (457)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 318 (457)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCC
Q 044513 319 AGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILK 398 (457)
Q Consensus 319 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~K 398 (457)
.|
T Consensus 236 ------------------------------------------------------------------------------~~ 237 (307)
T cd04852 236 ------------------------------------------------------------------------------LK 237 (307)
T ss_pred ------------------------------------------------------------------------------Cc
Confidence 36
Q ss_pred CceeecCccEEeeecC---------CCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 399 PDISAPGIDILAAWSP---------VNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 399 Pdi~APG~~i~s~~~~---------~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
|||+|||.+|.+++.. ...|..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 238 ~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~t 305 (307)
T cd04852 238 PDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTT 305 (307)
T ss_pred cceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 7999999999988753 2456667999999999999999999999999999999999987
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.4e-50 Score=378.75 Aligned_cols=238 Identities=25% Similarity=0.372 Sum_probs=193.6
Q ss_pred ccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCC
Q 044513 31 ERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGH 110 (457)
Q Consensus 31 ~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gH 110 (457)
|++|++|+||+|||||+|||.+||+|.+-. ...+|..+ ....|..+|
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~-------------------------~~~~~~~~--------~~~~d~~gH 47 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK-------------------------ERTNWTNE--------KTLDDGLGH 47 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc-------------------------cccccCCC--------CCCCCCCCc
Confidence 889999999999999999999999996411 01122221 234567899
Q ss_pred cchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCc
Q 044513 111 GSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHEYF 189 (457)
Q Consensus 111 GThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~ 189 (457)
||||||||+|+.. .+.||||+|+|+.+|++.+.+ ...+.++++++||++.+++|||||||... +.
T Consensus 48 GT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~ 113 (255)
T cd07479 48 GTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FM 113 (255)
T ss_pred HHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CC
Confidence 9999999998742 138999999999999998765 46678899999999999999999999762 23
Q ss_pred cchHHHHHHHhhhCCcEEEEecCCCCCCC--CccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCcee
Q 044513 190 NDSIAIGTFHAMRNGILTSASAGNDGPSR--STITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTY 267 (457)
Q Consensus 190 ~~~~~~~~~~a~~~gi~vV~AAGN~g~~~--~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..++.+++.++.++|+++|+||||+|... ...++..+++|+||+.+.+
T Consensus 114 ~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 163 (255)
T cd07479 114 DKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------------------ 163 (255)
T ss_pred CcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC------------------------------
Confidence 45677777788899999999999999753 2456788899999985433
Q ss_pred eeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeecc
Q 044513 268 PLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDT 347 (457)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (457)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCC----CCCCCCCceeecCccEEeeecCCCCCccCCc
Q 044513 348 NDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPI----TPDILKPDISAPGIDILAAWSPVNPVSEVKG 423 (457)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~----~~~~~KPdi~APG~~i~s~~~~~~~~~~~sG 423 (457)
+.++.||++|++.. .+++.||||+|||.+|.++... +.|..++|
T Consensus 164 -------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-~~~~~~sG 211 (255)
T cd07479 164 -------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-GGCRALSG 211 (255)
T ss_pred -------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-CCeEEecc
Confidence 24688899995421 2788999999999999988765 45667799
Q ss_pred chhhHHHHHHHHHHHHHhCC----CCCHHHHHHHHhcC
Q 044513 424 TSMACPHVTGAAAYIKSFHP----TWSPAAIKSALMTT 457 (457)
Q Consensus 424 TSmAaP~VAG~aALl~~~~P----~lt~~~i~~~L~~T 457 (457)
||||||+|||++|||+|++| .|+|.|||++|++|
T Consensus 212 TS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~s 249 (255)
T cd07479 212 TSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIES 249 (255)
T ss_pred HHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhh
Confidence 99999999999999999999 79999999999976
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-49 Score=382.06 Aligned_cols=277 Identities=28% Similarity=0.238 Sum_probs=186.6
Q ss_pred CCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhh
Q 044513 37 ESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTAS 116 (457)
Q Consensus 37 G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 116 (457)
|+||+|+|||||||.+||||.+... ..|...++. ...+..+.++..+ ....+.|..+|||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~~d~------~~~~~~g~d~~~~------~~~~~~D~~gHGThvAG 64 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLKFDY------KAYLLPGMDKWGG------FYVIMYDFFSHGTSCAS 64 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccccCc------CCCccCCcCCCCC------ccCCCCCccccchhHHH
Confidence 8999999999999999999965321 111111110 0011111121111 11245688999999999
Q ss_pred hcccccCccccccccC-CcccccccccccEEEeeeecCCCC-CHHHHHH-------HHHHH--HHCCCcEEEecCCCCCC
Q 044513 117 TAAGNLVSMASLYGFS-SGTARGCVPSARIAVYKICWSDGC-DDADILA-------AFDDA--IADGVDIISLSLGSSNP 185 (457)
Q Consensus 117 i~ag~~~~~~~~~g~~-~~~~~GvAP~A~l~~~kv~~~~~~-~~~~i~~-------ai~~a--~~~~~~Vin~S~G~~~~ 185 (457)
||+|....+.+.++.. ...+.||||+|+|+.+|++...+. ....+.. +++|. .+.+++|||||||....
T Consensus 65 iiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~ 144 (311)
T cd07497 65 VAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNF 144 (311)
T ss_pred HHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCC
Confidence 9999875432222110 112389999999999999875432 2222222 34443 36789999999997532
Q ss_pred CC----CccchHHHHHHHh-hhCCcEEEEecCCCCCCC--CccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecc
Q 044513 186 HE----YFNDSIAIGTFHA-MRNGILTSASAGNDGPSR--STITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISIN 258 (457)
Q Consensus 186 ~~----~~~~~~~~~~~~a-~~~gi~vV~AAGN~g~~~--~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (457)
.. ...+..+.+++.+ .++|+++|+||||+|... ...++.++++|+||+++...... .
T Consensus 145 ~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~-~--------------- 208 (311)
T cd07497 145 AYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRP-F--------------- 208 (311)
T ss_pred CccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccc-h---------------
Confidence 11 1123344444443 379999999999999753 45677889999999975331000 0
Q ss_pred cccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCC
Q 044513 259 TYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSF 338 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 338 (457)
+...+
T Consensus 209 --------~~~~~------------------------------------------------------------------- 213 (311)
T cd07497 209 --------YLFGY------------------------------------------------------------------- 213 (311)
T ss_pred --------hhhcc-------------------------------------------------------------------
Confidence 00000
Q ss_pred CcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC---
Q 044513 339 PLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV--- 415 (457)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~--- 415 (457)
.-...+.++.||||||+. ++++||||+|||.+++++.+..
T Consensus 214 -----------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~ 256 (311)
T cd07497 214 -----------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSG 256 (311)
T ss_pred -----------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCC
Confidence 001234678999999999 9999999999999999886543
Q ss_pred ------CCCccCCcchhhHHHHHHHHHHHHHhCC------CCCHHHHHHHHhcC
Q 044513 416 ------NPVSEVKGTSMACPHVTGAAAYIKSFHP------TWSPAAIKSALMTT 457 (457)
Q Consensus 416 ------~~~~~~sGTSmAaP~VAG~aALl~~~~P------~lt~~~i~~~L~~T 457 (457)
..|..++|||||||||||++|||+|++| .+++++||++|++|
T Consensus 257 ~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~t 310 (311)
T cd07497 257 GALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMST 310 (311)
T ss_pred cccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhc
Confidence 2567789999999999999999999886 68999999999987
No 5
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.1e-48 Score=391.90 Aligned_cols=269 Identities=20% Similarity=0.209 Sum_probs=195.5
Q ss_pred ccccCCchhccc--CCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCC--ccccccccCCccccccceeEEEeccCCCCC
Q 044513 21 WDFMGFSQQVER--STTEESDIVIGVFDTGIWPESESFNGTGFGPPPT--KWRGSCQVSANFTCNNKIVGARYYKSDGEF 96 (457)
Q Consensus 21 ~~~~~~~~~~~~--~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (457)
.+.++++ .+|+ .+.+|+||+|||||||||++||||.+..+..... -.+.-...+.+. -.-.++++|.++.
T Consensus 298 Ld~i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~GrdgiDdD~nG~---vdd~~G~nfVd~~-- 371 (639)
T PTZ00262 298 LDLTRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKGIDDDNNGN---VDDEYGANFVNND-- 371 (639)
T ss_pred cchhCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccccccccCCc---ccccccccccCCC--
Confidence 3456666 5554 5788999999999999999999998654221110 001001111000 0113345555432
Q ss_pred CCCCCCCCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcE
Q 044513 97 GPDDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDI 175 (457)
Q Consensus 97 ~~~~~~~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~V 175 (457)
..+.|..||||||||||||.+++.. |+ .||||+|+|+.+|+++..+ +..+++++||+||++.|++|
T Consensus 372 -----~~P~D~~GHGTHVAGIIAA~gnN~~---Gi-----~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~V 438 (639)
T PTZ00262 372 -----GGPMDDNYHGTHVSGIISAIGNNNI---GI-----VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHM 438 (639)
T ss_pred -----CCCCCCCCcchHHHHHHhccccCCC---ce-----eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCE
Confidence 3457889999999999999875543 22 8999999999999998765 58889999999999999999
Q ss_pred EEecCCCCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCC--------------ccCC----CCCCceEEEeeecC
Q 044513 176 ISLSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRS--------------TITN----VAPWFISVAASTID 237 (457)
Q Consensus 176 in~S~G~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~--------------~~~~----~~~~~i~Vga~~~~ 237 (457)
||||||... ....+.+++.+|.++|+++|+||||++.... .+++ ..+++|+||+...+
T Consensus 439 INmSlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d 514 (639)
T PTZ00262 439 INGSFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKD 514 (639)
T ss_pred EEeccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCC
Confidence 999999762 2356788888999999999999999985431 1222 23566777664322
Q ss_pred ceeeeeEEeCCCceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccc
Q 044513 238 RKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPF 317 (457)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~ 317 (457)
.
T Consensus 515 ~------------------------------------------------------------------------------- 515 (639)
T PTZ00262 515 K------------------------------------------------------------------------------- 515 (639)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCCceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCC
Q 044513 318 SAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDIL 397 (457)
Q Consensus 318 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~ 397 (457)
......+.+|++|..
T Consensus 516 ----------------------------------------------------------~~~~s~s~~Snyg~~------- 530 (639)
T PTZ00262 516 ----------------------------------------------------------NNQYSLSPNSFYSAK------- 530 (639)
T ss_pred ----------------------------------------------------------CCcccccccccCCCC-------
Confidence 000013455666532
Q ss_pred CCceeecCccEEeeecCCCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 398 KPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 398 KPdi~APG~~i~s~~~~~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
++||+|||.+|+|+.+. +.|..++|||||||+|||++|||++++|+|++.||+++|++|
T Consensus 531 ~VDIaAPG~dI~St~p~-g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~T 589 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK-NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKES 589 (639)
T ss_pred cceEEeCCCCeeeccCC-CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 34999999999999877 467788999999999999999999999999999999999876
No 6
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2e-47 Score=362.93 Aligned_cols=241 Identities=27% Similarity=0.322 Sum_probs=198.5
Q ss_pred cccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCC
Q 044513 30 VERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDG 109 (457)
Q Consensus 30 ~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~g 109 (457)
+|+.+++|+||+|||||+|||.+||+|.+....+.. .+.. ......+..+
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~-----------------------~~~~-------~~~~~~~~~g 51 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLF-----------------------TYAA-------AACQDGGASA 51 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccccc-----------------------Cccc-------cCCCCCCCCC
Confidence 699999999999999999999999999764322111 0100 0123456789
Q ss_pred CcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC--CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCC
Q 044513 110 HGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG--CDDADILAAFDDAIADGVDIISLSLGSSNPHE 187 (457)
Q Consensus 110 HGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~--~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~ 187 (457)
||||||||++|+..+ .+.||||+|+|+.++++...+ ....+++++|+||++.+++|||||||......
T Consensus 52 HGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~ 121 (267)
T cd07476 52 HGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTG 121 (267)
T ss_pred cHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCC
Confidence 999999999987532 138999999999999987654 24678999999999999999999999864444
Q ss_pred CccchHHHHHHHhhhCCcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCcee
Q 044513 188 YFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTY 267 (457)
Q Consensus 188 ~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.....+.++++++.++|+++|+||||++.....+++..+++|+||+.+.+
T Consensus 122 ~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------------ 171 (267)
T cd07476 122 EADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------------------ 171 (267)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC------------------------------
Confidence 45667888999999999999999999998888888999999999985432
Q ss_pred eeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeecc
Q 044513 268 PLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDT 347 (457)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (457)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccCCcchhh
Q 044513 348 NDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMA 427 (457)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~sGTSmA 427 (457)
+.++.||++|+.. .||||+|||.+|.++.+. +.|..++|||||
T Consensus 172 -------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-~~~~~~sGTS~A 214 (267)
T cd07476 172 -------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-GEVVRRSGTSFA 214 (267)
T ss_pred -------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-CCeEEeccHHHH
Confidence 2356789999765 378999999999998877 456677999999
Q ss_pred HHHHHHHHHHHHHhCCC----CCHHHHHHHHhcC
Q 044513 428 CPHVTGAAAYIKSFHPT----WSPAAIKSALMTT 457 (457)
Q Consensus 428 aP~VAG~aALl~~~~P~----lt~~~i~~~L~~T 457 (457)
||+|||++|||+|++|. +++++||++|++|
T Consensus 215 aP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~t 248 (267)
T cd07476 215 AAIVAGIAALLLSLQLRRGAPPDPLAVRRALLET 248 (267)
T ss_pred HHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHh
Confidence 99999999999999987 9999999999976
No 7
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=2.5e-47 Score=367.79 Aligned_cols=261 Identities=26% Similarity=0.356 Sum_probs=190.5
Q ss_pred CCeEEEEeecccCCCCCCCCCCCCCCCCC-ccccccccCCccccccceeEEEeccCCCC---------C-------CCCC
Q 044513 38 SDIVIGVFDTGIWPESESFNGTGFGPPPT-KWRGSCQVSANFTCNNKIVGARYYKSDGE---------F-------GPDD 100 (457)
Q Consensus 38 ~gv~V~ViDtGid~~Hp~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~-------~~~~ 100 (457)
|+|+|||||||||++||+|++..|....+ ..++..+++.++. +..++++|..... . ...+
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~---dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~ 77 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYI---DDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNND 77 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCcc---ccccCeeccCCcccccccccCccccccccccccc
Confidence 68999999999999999998765432211 1223333332221 1134444442110 0 0111
Q ss_pred CCCCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHHCCCcEEEecC
Q 044513 101 LPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIADGVDIISLSL 180 (457)
Q Consensus 101 ~~~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~ 180 (457)
...+.+..+|||||||||++...+.. |+ .|+||+|+|+.+|++........++++||+||++.+++||||||
T Consensus 78 ~~~~~~~~gHGT~VAGiIaa~~~n~~---g~-----~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~ 149 (291)
T cd07483 78 VNGPISDADHGTHVAGIIAAVRDNGI---GI-----DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSF 149 (291)
T ss_pred cCCCCCCCCcHHHHHHHHhCcCCCCC---ce-----EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 23344688999999999999875542 33 89999999999999876556778899999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCC---ccCC--------CCCCceEEEeeecCceeeeeEEeCCC
Q 044513 181 GSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRS---TITN--------VAPWFISVAASTIDRKFSTKVQLGNN 249 (457)
Q Consensus 181 G~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~---~~~~--------~~~~~i~Vga~~~~~~~~~~~~~~~~ 249 (457)
|... ......+..+++++.++|++||+||||+|.... .++. ..+++|+||+....
T Consensus 150 G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------------ 215 (291)
T cd07483 150 GKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------------ 215 (291)
T ss_pred CCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc------------
Confidence 9752 222356777888889999999999999986432 1222 23566677664322
Q ss_pred ceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecC
Q 044513 250 NIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQ 329 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~ 329 (457)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEE
Q 044513 330 RRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDIL 409 (457)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~ 409 (457)
.....++.||++|+.. |||+|||..|.
T Consensus 216 ----------------------------------------------~~~~~~~~~Sn~G~~~-------vdi~APG~~i~ 242 (291)
T cd07483 216 ----------------------------------------------YENNLVANFSNYGKKN-------VDVFAPGERIY 242 (291)
T ss_pred ----------------------------------------------CCcccccccCCCCCCc-------eEEEeCCCCeE
Confidence 0011367899999753 59999999999
Q ss_pred eeecCCCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 410 AAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 410 s~~~~~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
++.+. +.|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 243 s~~~~-~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~t 289 (291)
T cd07483 243 STTPD-NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILES 289 (291)
T ss_pred eccCc-CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 99876 457778999999999999999999999999999999999986
No 8
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.9e-46 Score=371.86 Aligned_cols=278 Identities=27% Similarity=0.345 Sum_probs=214.9
Q ss_pred cccCCC-CCCCeEEEEeecccCCCCCCCCCCCCCCCC-----CccccccccCCccccccceeEEEeccCCCCCCCCCCCC
Q 044513 30 VERSTT-EESDIVIGVFDTGIWPESESFNGTGFGPPP-----TKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPS 103 (457)
Q Consensus 30 ~~~~g~-~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 103 (457)
+|+++. +|+||+|+|||+|||++||+|.+....+.. ..+.+.+..+.....+.+++++++|.+..... ..
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDI----LD 77 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCcc----CC
Confidence 577777 999999999999999999999876544332 24555555566666788999999998764321 11
Q ss_pred CCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecC---CCCCHHHHHHHHHHHHHCCCcEEEecC
Q 044513 104 PRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWS---DGCDDADILAAFDDAIADGVDIISLSL 180 (457)
Q Consensus 104 ~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~---~~~~~~~i~~ai~~a~~~~~~Vin~S~ 180 (457)
..+..+|||||||||+|...+... ...+.|+||+|+|+.+|+++. .......++++++++++.+++||||||
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 152 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSL 152 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 446889999999999999755321 122389999999999999973 335778899999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCCc----------------cCCCCCCceEEEeeecCceeeeeE
Q 044513 181 GSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRST----------------ITNVAPWFISVAASTIDRKFSTKV 244 (457)
Q Consensus 181 G~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~----------------~~~~~~~~i~Vga~~~~~~~~~~~ 244 (457)
|...........+.++++++.++|++||+||||++..... .++..+++|+|++....
T Consensus 153 G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~------- 225 (346)
T cd07475 153 GSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK------- 225 (346)
T ss_pred CcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-------
Confidence 9985554566788888999999999999999999865422 12334556666553210
Q ss_pred EeCCCceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEE
Q 044513 245 QLGNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGA 324 (457)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~ 324 (457)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeec
Q 044513 325 LMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAP 404 (457)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~AP 404 (457)
......+.++.||++||+. +++.||||+||
T Consensus 226 ------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 226 ------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred ------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 0012234678999999999 99999999999
Q ss_pred CccEEeeecCCCCCccCCcchhhHHHHHHHHHHHHHh----CCCCCHHHHHHHH
Q 044513 405 GIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSF----HPTWSPAAIKSAL 454 (457)
Q Consensus 405 G~~i~s~~~~~~~~~~~sGTSmAaP~VAG~aALl~~~----~P~lt~~~i~~~L 454 (457)
|.+|.++... +.|..++|||||||+|||++|||+|+ +|.|++.|++++|
T Consensus 256 G~~i~s~~~~-~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~i 308 (346)
T cd07475 256 GGNIYSTVND-NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLV 308 (346)
T ss_pred CCCeEEecCC-CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 9999998876 45667799999999999999999997 7999998854444
No 9
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.4e-46 Score=357.93 Aligned_cols=246 Identities=26% Similarity=0.277 Sum_probs=183.1
Q ss_pred CCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcch
Q 044513 34 TTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSH 113 (457)
Q Consensus 34 g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGTh 113 (457)
|+||+||+|+|||+|||.+||+|.+-.-. ++.....+... .....|..+||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~--------------------~l~~~~~~~~~-------~~~~~d~~gHGT~ 53 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG--------------------DLPGNVNVLGD-------LDGGSGGGDEGRA 53 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC--------------------CCCcceeeccc-------cCCCCCCCchHHH
Confidence 68999999999999999998854321100 11111111111 0234568899999
Q ss_pred hhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchH
Q 044513 114 TASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSI 193 (457)
Q Consensus 114 VAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~ 193 (457)
||||| .||||+|+|+.++... ..++++++|+|+++.+++|||||||......+....+
T Consensus 54 vAgii------------------~GvAP~a~l~~~~~~~----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~ 111 (275)
T cd05562 54 MLEII------------------HDIAPGAELAFHTAGG----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPI 111 (275)
T ss_pred HHHHH------------------hccCCCCEEEEEecCC----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHH
Confidence 99999 4779999999988732 4788999999999999999999999864333345678
Q ss_pred HHHHHHhhhC-CcEEEEecCCCCCCC-CccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEe
Q 044513 194 AIGTFHAMRN-GILTSASAGNDGPSR-STITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIY 271 (457)
Q Consensus 194 ~~~~~~a~~~-gi~vV~AAGN~g~~~-~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (457)
.++++++.++ |++||+||||++... ...++..+++|+||+.+.+.........+.+
T Consensus 112 ~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~~---------------------- 169 (275)
T cd05562 112 AQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAPG---------------------- 169 (275)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccccC----------------------
Confidence 8888888887 999999999999854 3557889999999997655211100000000
Q ss_pred cCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHH
Q 044513 272 GGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGS 351 (457)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (457)
T Consensus 170 -------------------------------------------------------------------------------- 169 (275)
T cd05562 170 -------------------------------------------------------------------------------- 169 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCcc-EEeeecCCCCCccCCcchhhHHH
Q 044513 352 DILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGID-ILAAWSPVNPVSEVKGTSMACPH 430 (457)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~-i~s~~~~~~~~~~~sGTSmAaP~ 430 (457)
......+.++++||+. +++.||||+|||+. +.+... .+.|..++|||||||+
T Consensus 170 ------------------------~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~-~~~~~~~sGTS~AaP~ 222 (275)
T cd05562 170 ------------------------GTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGD-GDGPPNFFGTSAAAPH 222 (275)
T ss_pred ------------------------CCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCc-CCceeecccchHHHHH
Confidence 0001235678899988 89999999999764 344443 3567778999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 431 VTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 431 VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
|||++|||+|++|+|+++|||++|++|
T Consensus 223 VaG~aALl~~~~p~lt~~~v~~~L~~t 249 (275)
T cd05562 223 AAGVAALVLSANPGLTPADIRDALRST 249 (275)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999875
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4e-46 Score=354.89 Aligned_cols=242 Identities=29% Similarity=0.361 Sum_probs=195.0
Q ss_pred CeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhc
Q 044513 39 DIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTA 118 (457)
Q Consensus 39 gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 118 (457)
||+|||||+|||++||+|...... .+.++...++|.++... ...+..+|||||||||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~------~~~~~~~HGT~vagii 57 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF-----------------KNLRILGEYDFVDNSNN------TNYTDDDHGTAVLSTM 57 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc-----------------cCCceeeeecCccCCCC------CCCCCCCchhhhheee
Confidence 799999999999999999522110 12366777777765311 1356889999999999
Q ss_pred ccccCccccccccCCcccccccccccEEEeeeecCCC---CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCC-------
Q 044513 119 AGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG---CDDADILAAFDDAIADGVDIISLSLGSSNPHEY------- 188 (457)
Q Consensus 119 ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~---~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~------- 188 (457)
+|+.. +.+.|+||+|+|+.+|+..... .....++.+++++.+++++|||||||.......
T Consensus 58 a~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~ 127 (261)
T cd07493 58 AGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYA 127 (261)
T ss_pred eeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccc
Confidence 99853 2248999999999999865433 245568899999999999999999998633211
Q ss_pred ----ccchHHHHHHHhhhCCcEEEEecCCCCCC---CCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceeccccc
Q 044513 189 ----FNDSIAIGTFHAMRNGILTSASAGNDGPS---RSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYD 261 (457)
Q Consensus 189 ----~~~~~~~~~~~a~~~gi~vV~AAGN~g~~---~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (457)
....+.++++++.++|++||+||||++.. ...+++..+++|+||+.+.+
T Consensus 128 ~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------ 183 (261)
T cd07493 128 DMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------ 183 (261)
T ss_pred cccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC------------------------
Confidence 12457778888899999999999999977 45677888999999985432
Q ss_pred CCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcc
Q 044513 262 LQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLP 341 (457)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 341 (457)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccC
Q 044513 342 TSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEV 421 (457)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~ 421 (457)
+.++.||++||.. +++.||||+|||.++.+.... +.|..+
T Consensus 184 -------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-~~~~~~ 223 (261)
T cd07493 184 -------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-GNITYA 223 (261)
T ss_pred -------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-CcEEee
Confidence 2467899999998 999999999999999985544 456778
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
+|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 224 sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~t 259 (261)
T cd07493 224 NGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKS 259 (261)
T ss_pred CcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999986
No 11
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.5e-46 Score=355.77 Aligned_cols=245 Identities=31% Similarity=0.384 Sum_probs=193.1
Q ss_pred CCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhh
Q 044513 37 ESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTAS 116 (457)
Q Consensus 37 G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 116 (457)
|+||+|||||+|||++||+|.+.... |. .. .+.....+.+.. .....+.|..+|||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~-----~~---~~--------~~~~~~~~~d~~----~~~~~~~d~~~HGT~vag 60 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRG-----WG---GG--------SADHDYNWFDPV----GNTPLPYDDNGHGTHTMG 60 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccc-----cC---CC--------CcccccccccCC----CCCCCCCCCCCchhhhhh
Confidence 89999999999999999999764110 00 00 000000111100 011345678899999999
Q ss_pred hcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHH------------CCCcEEEecCCCCC
Q 044513 117 TAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIA------------DGVDIISLSLGSSN 184 (457)
Q Consensus 117 i~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~------------~~~~Vin~S~G~~~ 184 (457)
||+|...... ..|+||+|+|+.+|+++.......+++++++++++ .+++|||||||...
T Consensus 61 ii~g~~~~~~---------~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~ 131 (264)
T cd07481 61 TMVGNDGDGQ---------QIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPS 131 (264)
T ss_pred heeecCCCCC---------ceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCC
Confidence 9998754321 17899999999999998877788899999999875 67899999999873
Q ss_pred CCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCC---ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceeccccc
Q 044513 185 PHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRS---TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYD 261 (457)
Q Consensus 185 ~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (457)
. ....+..++..+.++|++||+||||++.... .+++..+++|+||+.+.+
T Consensus 132 ~---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 184 (264)
T cd07481 132 G---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------------------------ 184 (264)
T ss_pred C---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC------------------------
Confidence 2 3456677777888899999999999986543 356788899999985433
Q ss_pred CCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcc
Q 044513 262 LQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLP 341 (457)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 341 (457)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccC
Q 044513 342 TSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEV 421 (457)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~ 421 (457)
+.++.||++||.. +++.||||+|||.+|.++.+. +.|..+
T Consensus 185 -------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-~~~~~~ 224 (264)
T cd07481 185 -------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-GGYGSS 224 (264)
T ss_pred -------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-CceEee
Confidence 3568999999998 899999999999999999877 456677
Q ss_pred CcchhhHHHHHHHHHHHHHhCCC--CCHHHHHHHHhcC
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPT--WSPAAIKSALMTT 457 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~--lt~~~i~~~L~~T 457 (457)
+|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 225 ~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~t 262 (264)
T cd07481 225 SGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTET 262 (264)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999 9999999999987
No 12
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.4e-46 Score=356.25 Aligned_cols=258 Identities=27% Similarity=0.302 Sum_probs=199.0
Q ss_pred hcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCC
Q 044513 29 QVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTD 108 (457)
Q Consensus 29 ~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~ 108 (457)
.+|..+++|+||+|+|||+|||++||+|.+.........+ .....+.... ........+..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~~~~~----------------~~~~~~~~~~---~~~~~~~~~~~ 61 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPA----------------VNGYNFVPNV---GDIDNDVSVGG 61 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCCCcccc----------------cCCccccccc---CCcCCCCCCCC
Confidence 3799999999999999999999999999875211000000 0000010000 00012345678
Q ss_pred CCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCC
Q 044513 109 GHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHE 187 (457)
Q Consensus 109 gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~ 187 (457)
+|||||||||++...+....-|. ..+.|+||+|+|+.+|++.... .....++++|+++++.+++|||||||.... .
T Consensus 62 gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~-~ 138 (273)
T cd07485 62 GHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGG-G 138 (273)
T ss_pred CCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCc-c
Confidence 99999999999986543221111 1346799999999999988754 477889999999999999999999998732 3
Q ss_pred CccchHHHHHHHhhhC-------CcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccc
Q 044513 188 YFNDSIAIGTFHAMRN-------GILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTY 260 (457)
Q Consensus 188 ~~~~~~~~~~~~a~~~-------gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (457)
.+...+.++++++.++ |+++|+||||++.....+++..+++|+|++.+.+
T Consensus 139 ~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~----------------------- 195 (273)
T cd07485 139 IYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN----------------------- 195 (273)
T ss_pred ccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-----------------------
Confidence 3455677777777777 9999999999998887778889999999985433
Q ss_pred cCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCc
Q 044513 261 DLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPL 340 (457)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 340 (457)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCc-cEEeeecCC----
Q 044513 341 PTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGI-DILAAWSPV---- 415 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~-~i~s~~~~~---- 415 (457)
+.++.||++|+.. ||+|||. .+.++.+..
T Consensus 196 --------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~~~ 229 (273)
T cd07485 196 --------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDGDG 229 (273)
T ss_pred --------------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccCCC
Confidence 2457899999987 9999999 888876543
Q ss_pred -CCCccCCcchhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHhcC
Q 044513 416 -NPVSEVKGTSMACPHVTGAAAYIKSFHPT-WSPAAIKSALMTT 457 (457)
Q Consensus 416 -~~~~~~sGTSmAaP~VAG~aALl~~~~P~-lt~~~i~~~L~~T 457 (457)
..|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 230 ~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 230 GGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 46777899999999999999999999999 9999999999987
No 13
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-46 Score=354.09 Aligned_cols=247 Identities=30% Similarity=0.458 Sum_probs=200.8
Q ss_pred CCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhh
Q 044513 37 ESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTAS 116 (457)
Q Consensus 37 G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 116 (457)
|+||+|+|||+|||++||+|.+..... ..+.... .......|..+|||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~------------------------~~~~~~~----~~~~~~~d~~~HGT~vAg 52 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRF------------------------ADFVNTV----NGRTTPYDDNGHGTHVAG 52 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccccc------------------------ccccccc----cCCCCCCCCCCchHHHHH
Confidence 899999999999999999997643211 1111100 011345567899999999
Q ss_pred hcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHC----CCcEEEecCCCCCCCCCccc
Q 044513 117 TAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIAD----GVDIISLSLGSSNPHEYFND 191 (457)
Q Consensus 117 i~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~----~~~Vin~S~G~~~~~~~~~~ 191 (457)
||+|...+. ...+.|+||+|+|+.+|+++..+ ....+++++++|+++. +++|||||||.........+
T Consensus 53 iiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~ 125 (264)
T cd07487 53 IIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGED 125 (264)
T ss_pred HHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCC
Confidence 999986542 12238999999999999998765 4778899999999998 99999999998855566778
Q ss_pred hHHHHHHHhhhCCcEEEEecCCCCCCCC--ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeee
Q 044513 192 SIAIGTFHAMRNGILTSASAGNDGPSRS--TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPL 269 (457)
Q Consensus 192 ~~~~~~~~a~~~gi~vV~AAGN~g~~~~--~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+.++++++.++|++||+||||++.... ..++..+++|+||+...+..
T Consensus 126 ~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------------------ 175 (264)
T cd07487 126 PLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------------------ 175 (264)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------------------
Confidence 8999999999999999999999997765 56778899999998654410
Q ss_pred EecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeecccc
Q 044513 270 IYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTND 349 (457)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (457)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeec--------CCCCCccC
Q 044513 350 GSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWS--------PVNPVSEV 421 (457)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~--------~~~~~~~~ 421 (457)
....++.||++||+. +++.||||+|||++|.+..+ ....+..+
T Consensus 176 ---------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~ 226 (264)
T cd07487 176 ---------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM 226 (264)
T ss_pred ---------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEec
Confidence 001368899999999 99999999999999999732 33566677
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
+|||||||+|||++|||+|++|.|+++|||++|++|
T Consensus 227 ~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~t 262 (264)
T cd07487 227 SGTSMATPHVSGAIALLLQANPILTPDEVKCILRDT 262 (264)
T ss_pred cccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999976
No 14
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-45 Score=360.18 Aligned_cols=255 Identities=31% Similarity=0.467 Sum_probs=204.2
Q ss_pred CCchhcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCC---CCCCCC
Q 044513 25 GFSQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGE---FGPDDL 101 (457)
Q Consensus 25 ~~~~~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~ 101 (457)
|++ .+|+.|++|+||+|||||+|||++||+|.+.... +.++.+.+++..+.. ..+...
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~~ 61 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP------------------GCKVAGGYDFVGDDYDGTNPPVPD 61 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC------------------CceeccccccCCcccccccCCCCC
Confidence 345 7899999999999999999999999999764321 112233333332211 111122
Q ss_pred CCCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecC
Q 044513 102 PSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSL 180 (457)
Q Consensus 102 ~~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~ 180 (457)
..+.|..+|||||||||+++..+ .++ .|+||+|+|+.+|++...+ .....++++++++++.+++||||||
T Consensus 62 ~~~~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~ 132 (312)
T cd07489 62 DDPMDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASL 132 (312)
T ss_pred CCCCCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCC
Confidence 34556799999999999998754 233 8999999999999988655 4677789999999999999999999
Q ss_pred CCCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCC---ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceec
Q 044513 181 GSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRS---TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISI 257 (457)
Q Consensus 181 G~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~ 257 (457)
|... .+....+..+++++.++|+++|+||||+|.... ..++..+++|+||+.+
T Consensus 133 g~~~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------------- 188 (312)
T cd07489 133 GGPS--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------------- 188 (312)
T ss_pred CcCC--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------------
Confidence 9873 334477888888899999999999999987542 3456778888888632
Q ss_pred ccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCC
Q 044513 258 NTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFS 337 (457)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 337 (457)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC-C
Q 044513 338 FPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV-N 416 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~-~ 416 (457)
+.||++||+. +.+.||||+|||+++.++++.. +
T Consensus 189 --------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~~ 222 (312)
T cd07489 189 --------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAGG 222 (312)
T ss_pred --------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCCC
Confidence 4578999998 8999999999999999988775 3
Q ss_pred CCccCCcchhhHHHHHHHHHHHHHhC-CCCCHHHHHHHHhcC
Q 044513 417 PVSEVKGTSMACPHVTGAAAYIKSFH-PTWSPAAIKSALMTT 457 (457)
Q Consensus 417 ~~~~~sGTSmAaP~VAG~aALl~~~~-P~lt~~~i~~~L~~T 457 (457)
.|..++|||||||+|||++|||+|++ |.+++.|||++|++|
T Consensus 223 ~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~t 264 (312)
T cd07489 223 GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLAST 264 (312)
T ss_pred ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 47778999999999999999999999 999999999999876
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=3e-45 Score=360.58 Aligned_cols=215 Identities=28% Similarity=0.359 Sum_probs=162.5
Q ss_pred CCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCC---CHHHHHHHHHHHHHCCCcEEEecCC
Q 044513 105 RDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGC---DDADILAAFDDAIADGVDIISLSLG 181 (457)
Q Consensus 105 ~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~---~~~~i~~ai~~a~~~~~~Vin~S~G 181 (457)
.|+.+|||||||||+|+..++. .+.|+||+|+|+.+|+++.... ....+++|+++|++.+++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4678999999999999864432 2389999999999999765322 3457999999999999999999999
Q ss_pred CCCCCCCccchHHHHHHHh-hhCCcEEEEecCCCCCCCCcc--CC-CCCCceEEEeeecCceeeeeEEeCCCceeeceec
Q 044513 182 SSNPHEYFNDSIAIGTFHA-MRNGILTSASAGNDGPSRSTI--TN-VAPWFISVAASTIDRKFSTKVQLGNNNIYEGISI 257 (457)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~a-~~~gi~vV~AAGN~g~~~~~~--~~-~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~ 257 (457)
....... ...+.+++.++ .++|++||+||||+|....+. |+ ..+++|+||+......+...
T Consensus 254 ~~~~~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 254 EATHWPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred cCCCCcc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 8743222 22344555544 458999999999999766543 43 46899999985432100000
Q ss_pred ccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCC
Q 044513 258 NTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFS 337 (457)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 337 (457)
|.+.
T Consensus 319 ---------y~~~------------------------------------------------------------------- 322 (412)
T cd04857 319 ---------YSLR------------------------------------------------------------------- 322 (412)
T ss_pred ---------cccc-------------------------------------------------------------------
Confidence 0000
Q ss_pred CCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC-C
Q 044513 338 FPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV-N 416 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~-~ 416 (457)
....+.++.||||||+. +|++||||+|||+.|.+..... .
T Consensus 323 -------------------------------------~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~~~ 363 (412)
T cd04857 323 -------------------------------------EKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWTLQ 363 (412)
T ss_pred -------------------------------------cccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCCCC
Confidence 01124578999999999 9999999999999998863322 4
Q ss_pred CCccCCcchhhHHHHHHHHHHHHH----hCCCCCHHHHHHHHhcC
Q 044513 417 PVSEVKGTSMACPHVTGAAAYIKS----FHPTWSPAAIKSALMTT 457 (457)
Q Consensus 417 ~~~~~sGTSmAaP~VAG~aALl~~----~~P~lt~~~i~~~L~~T 457 (457)
.|..++|||||||||||++|||++ .+|+|+|.+||++|++|
T Consensus 364 ~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~T 408 (412)
T cd04857 364 GSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENT 408 (412)
T ss_pred CeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHh
Confidence 567789999999999999999986 47899999999999986
No 16
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-45 Score=343.81 Aligned_cols=218 Identities=27% Similarity=0.390 Sum_probs=180.1
Q ss_pred eEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhcc
Q 044513 40 IVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAA 119 (457)
Q Consensus 40 v~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~a 119 (457)
|+|||||+|||.+||+|.+.... ...+.. ....+..+|||||||||+
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~------------------------~~~~~~---------~~~~~~~~HGT~vAgiia 47 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA------------------------RLFFAG---------PGAPAPSAHGTAVASLLA 47 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc------------------------cccCCC---------CCCCCCCCCHHHHHHHHh
Confidence 68999999999999999653211 111110 124457899999999999
Q ss_pred cccCccccccccCCcccccccccccEEEeeeecCCC----CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHH
Q 044513 120 GNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG----CDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAI 195 (457)
Q Consensus 120 g~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~----~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~ 195 (457)
+...+. .|+||+|+|+.+|++...+ .....++++|+||++.+++|||||||... ...+.+
T Consensus 48 ~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-----~~~l~~ 111 (239)
T cd05561 48 GAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-----NALLAA 111 (239)
T ss_pred CCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CHHHHH
Confidence 986332 6899999999999988642 47788999999999999999999999652 356788
Q ss_pred HHHHhhhCCcEEEEecCCCCCCC-CccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecCC
Q 044513 196 GTFHAMRNGILTSASAGNDGPSR-STITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGD 274 (457)
Q Consensus 196 ~~~~a~~~gi~vV~AAGN~g~~~-~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (457)
+++++.++|++||+||||+|... ..+++..+++|+|++.+.+
T Consensus 112 ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------- 154 (239)
T cd05561 112 AVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------- 154 (239)
T ss_pred HHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------------------
Confidence 88899999999999999999753 4678888999999985433
Q ss_pred CCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHHH
Q 044513 275 AANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDIL 354 (457)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (457)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccCCcchhhHHHHHHH
Q 044513 355 LYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGA 434 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~sGTSmAaP~VAG~ 434 (457)
+.+++||++|+.. ||+|||.+|.++.+. +.|..++|||||||+|||+
T Consensus 155 ------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-~~~~~~sGTS~AaP~vaG~ 201 (239)
T cd05561 155 ------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-GGYRYVSGTSFAAPFVTAA 201 (239)
T ss_pred ------------------------CCccccCCCCCcc--------eEEccccceecccCC-CCEEEeCCHHHHHHHHHHH
Confidence 2457889999987 999999999997765 4577779999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcC
Q 044513 435 AAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 435 aALl~~~~P~lt~~~i~~~L~~T 457 (457)
+|||+|++| |+++|||++|++|
T Consensus 202 aAll~~~~p-~~~~~i~~~L~~t 223 (239)
T cd05561 202 LALLLQASP-LAPDDARARLAAT 223 (239)
T ss_pred HHHHHhcCC-CCHHHHHHHHHHH
Confidence 999999999 9999999999876
No 17
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-45 Score=355.67 Aligned_cols=249 Identities=24% Similarity=0.246 Sum_probs=184.9
Q ss_pred EEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhccc
Q 044513 41 VIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAAG 120 (457)
Q Consensus 41 ~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ag 120 (457)
+|||||||||.+||+|.+... ....+.... ....|..+|||||||||++
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~------------------------~~~~~~~~~-------~~~~d~~gHGT~vAgiia~ 50 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALA------------------------EDDLDSDEP-------GWTADDLGHGTAVAGLALY 50 (291)
T ss_pred EEEEecCCCCCCChhhhhhhc------------------------cccccccCC-------CCcCCCCCChHHHHHHHHc
Confidence 799999999999999965321 111111110 1156789999999999997
Q ss_pred ccCccccccccCCcccccccccccEEEeeeecCCC-----CCHHHHHHHHHHHHHCC---CcEEEecCCCCCCCCCcc-c
Q 044513 121 NLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-----CDDADILAAFDDAIADG---VDIISLSLGSSNPHEYFN-D 191 (457)
Q Consensus 121 ~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-----~~~~~i~~ai~~a~~~~---~~Vin~S~G~~~~~~~~~-~ 191 (457)
...++. ...|+||+|+|+.+|++...+ ....+++++|+|+++.+ ++|||||||......... .
T Consensus 51 ~~~~~~--------~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~ 122 (291)
T cd04847 51 GDLTLP--------GNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPS 122 (291)
T ss_pred CcccCC--------CCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCC
Confidence 653321 127899999999999998763 36678999999999863 499999999874332222 3
Q ss_pred hHHHHHHH-hhhCCcEEEEecCCCCCCCCc------------cCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecc
Q 044513 192 SIAIGTFH-AMRNGILTSASAGNDGPSRST------------ITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISIN 258 (457)
Q Consensus 192 ~~~~~~~~-a~~~gi~vV~AAGN~g~~~~~------------~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (457)
.+.+++++ +.++|++||+||||++..... .++.++++|+||+.+.+........++.
T Consensus 123 ~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~~~---------- 192 (291)
T cd04847 123 SWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARYSA---------- 192 (291)
T ss_pred cHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccccc----------
Confidence 56666655 567999999999999976543 3567789999999776522111100000
Q ss_pred cccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCC
Q 044513 259 TYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSF 338 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 338 (457)
T Consensus 193 -------------------------------------------------------------------------------- 192 (291)
T cd04847 193 -------------------------------------------------------------------------------- 192 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeec-----
Q 044513 339 PLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWS----- 413 (457)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~----- 413 (457)
........||++||.. ++.+||||+|||+++.+...
T Consensus 193 -------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 193 -------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred -------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCcc
Confidence 0001234499999999 99999999999999987542
Q ss_pred ------------CCCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 414 ------------PVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 414 ------------~~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
....|..++|||||||+|||++|||+|++|++++++||++|++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~s 289 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHS 289 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 23567778999999999999999999999999999999999875
No 18
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.8e-45 Score=349.68 Aligned_cols=255 Identities=26% Similarity=0.311 Sum_probs=187.8
Q ss_pred CeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccc---cccceeEEEeccCCC--CCCCCCCCCCCCCCCCcch
Q 044513 39 DIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFT---CNNKIVGARYYKSDG--EFGPDDLPSPRDTDGHGSH 113 (457)
Q Consensus 39 gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~--~~~~~~~~~~~d~~gHGTh 113 (457)
||+|+|||||||++||+|.+.... .|+-..+...... ...+...-.++.+.. ...........+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHH
Confidence 799999999999999999874311 1110000000000 000000000000000 0000011234457889999
Q ss_pred hhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHH----------HCCCcEEEecCCCC
Q 044513 114 TASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAI----------ADGVDIISLSLGSS 183 (457)
Q Consensus 114 VAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~----------~~~~~Vin~S~G~~ 183 (457)
|||||+|...++ +++ .||||+|+|+.+|+++..+...+++++|++|+. +.+++|||||||..
T Consensus 77 vAgiiaa~~~~~---~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~ 148 (285)
T cd07496 77 VAGTIAAVTNNG---VGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGD 148 (285)
T ss_pred HHHHHhCcCCCC---CCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCC
Confidence 999999987543 233 899999999999999887778889999999998 35689999999987
Q ss_pred CCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCC-CccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccC
Q 044513 184 NPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSR-STITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDL 262 (457)
Q Consensus 184 ~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~-~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (457)
... ...+.+++.++.++|++||+||||++... ..+++..+++|+||+.+.+
T Consensus 149 ~~~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 200 (285)
T cd07496 149 GAC---SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------------------- 200 (285)
T ss_pred CCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-------------------------
Confidence 321 56788888899999999999999999776 6778888999999985433
Q ss_pred CCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcce
Q 044513 263 QNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPT 342 (457)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 342 (457)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC-------
Q 044513 343 SYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV------- 415 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~------- 415 (457)
+.++.||++|+.. ||+|||++|.+.....
T Consensus 201 ------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~ 236 (285)
T cd07496 201 ------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNT 236 (285)
T ss_pred ------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCccccccc
Confidence 2468899999987 9999999998876432
Q ss_pred -------CCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 416 -------NPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 416 -------~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
..|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 237 ~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 237 GTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 245667999999999999999999999999999999999987
No 19
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.2e-44 Score=350.93 Aligned_cols=268 Identities=30% Similarity=0.335 Sum_probs=198.4
Q ss_pred cCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCc
Q 044513 32 RSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHG 111 (457)
Q Consensus 32 ~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHG 111 (457)
.+|++|+||+|||||+|||++||+|.+.... +..+ .++++.....+... ..|..+||
T Consensus 1 ~~g~tG~gv~VaviDtGi~~~hp~l~~~~~~------------~~~~-~~~~~~~~~~~~~~----------~~d~~~HG 57 (293)
T cd04842 1 GLGLTGKGQIVGVADTGLDTNHCFFYDPNFN------------KTNL-FHRKIVRYDSLSDT----------KDDVDGHG 57 (293)
T ss_pred CCCcCCcCCEEEEEecCCCCCCCcccCCCcC------------cCcc-CcccEEEeeccCCC----------CCCCCCCc
Confidence 3689999999999999999999999764320 0000 22344444333322 22789999
Q ss_pred chhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC--CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCc
Q 044513 112 SHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG--CDDADILAAFDDAIADGVDIISLSLGSSNPHEYF 189 (457)
Q Consensus 112 ThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~--~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~ 189 (457)
|||||||+|+..+..... .+.|+||+|+|+.++++...+ .....+.++++++.+.+++|||||||..... .
T Consensus 58 T~vAgiia~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~ 130 (293)
T cd04842 58 THVAGIIAGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--G 130 (293)
T ss_pred chhheeeccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--c
Confidence 999999999876643211 238999999999999988765 4566788999999999999999999987432 1
Q ss_pred cchHHHHHHHhh-h-CCcEEEEecCCCCCCCC---ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCC
Q 044513 190 NDSIAIGTFHAM-R-NGILTSASAGNDGPSRS---TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQN 264 (457)
Q Consensus 190 ~~~~~~~~~~a~-~-~gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (457)
.....++++++. + +|+++|+||||++.... ..++..+++|+||+.+........
T Consensus 131 ~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~--------------------- 189 (293)
T cd04842 131 YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE--------------------- 189 (293)
T ss_pred cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc---------------------
Confidence 234444554433 3 89999999999997765 677889999999987655211000
Q ss_pred ceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEe
Q 044513 265 VTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSY 344 (457)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
.|..
T Consensus 190 ------------------------~~~~---------------------------------------------------- 193 (293)
T cd04842 190 ------------------------GGLG---------------------------------------------------- 193 (293)
T ss_pred ------------------------cccc----------------------------------------------------
Confidence 0000
Q ss_pred eccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecC--------CC
Q 044513 345 VDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSP--------VN 416 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~--------~~ 416 (457)
.......++.||++||+. +++.||||+|||++|.+.... ..
T Consensus 194 -----------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~ 242 (293)
T cd04842 194 -----------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDS 242 (293)
T ss_pred -----------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChh
Confidence 001224578999999998 999999999999999998632 24
Q ss_pred CCccCCcchhhHHHHHHHHHHHHHhCC--------CCCHHHHHHHHhcC
Q 044513 417 PVSEVKGTSMACPHVTGAAAYIKSFHP--------TWSPAAIKSALMTT 457 (457)
Q Consensus 417 ~~~~~sGTSmAaP~VAG~aALl~~~~P--------~lt~~~i~~~L~~T 457 (457)
.|..++|||||||+|||++|||+|++| .+++.++|++|++|
T Consensus 243 ~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~s 291 (293)
T cd04842 243 AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINS 291 (293)
T ss_pred heeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhc
Confidence 666779999999999999999999865 55667999999986
No 20
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-44 Score=341.13 Aligned_cols=248 Identities=29% Similarity=0.401 Sum_probs=186.3
Q ss_pred CeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhc
Q 044513 39 DIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTA 118 (457)
Q Consensus 39 gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 118 (457)
||+|||||+|||++||+|.+.. .....|..+.. .......+..+|||||||||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~------------------------~~~~~~~~~~~---~~~~~~~d~~~HGT~vAgii 53 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV------------------------AQWADFDENRR---ISATEVFDAGGHGTHVSGTI 53 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc------------------------CCceeccCCCC---CCCCCCCCCCCcHHHHHHHH
Confidence 7999999999999999997532 11122221100 11124456789999999999
Q ss_pred ccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHHHHH
Q 044513 119 AGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAIGTF 198 (457)
Q Consensus 119 ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~ 198 (457)
+++..+ +.+.|+||+|+|+.+|++...+...++++++|+|+++.+++|||||||..... ...+.++++
T Consensus 54 a~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~ 121 (254)
T cd07490 54 GGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVE 121 (254)
T ss_pred hcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHH
Confidence 998642 12379999999999999987767888999999999999999999999987332 566776666
Q ss_pred Hhhh-CCcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecCCCCC
Q 044513 199 HAMR-NGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAAN 277 (457)
Q Consensus 199 ~a~~-~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
.+.+ +|++||+||||++.....+++..+++|+||+.+.+.........+.
T Consensus 122 ~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~----------------------------- 172 (254)
T cd07490 122 ALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSFGS----------------------------- 172 (254)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCCcc-----------------------------
Confidence 6655 6999999999999888888899999999998765421110000000
Q ss_pred CCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHH
Q 044513 278 ISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYI 357 (457)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (457)
T Consensus 173 -------------------------------------------------------------------------------- 172 (254)
T cd07490 173 -------------------------------------------------------------------------------- 172 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeee---cCCCCCccCCcchhhHHHHHHH
Q 044513 358 NSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAW---SPVNPVSEVKGTSMACPHVTGA 434 (457)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~---~~~~~~~~~sGTSmAaP~VAG~ 434 (457)
......+.+|.. .....|||++|||.++.++. .....|..++|||||||+|||+
T Consensus 173 ----------------------~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~~~~~~~~~~GTS~AaP~vaG~ 229 (254)
T cd07490 173 ----------------------SGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGANGDGQYTRLSGTSMAAPHVAGV 229 (254)
T ss_pred ----------------------cccccccCCCCC-ccCCcCceEEeccCCeEccccCCCCCCCeeecccHHHHHHHHHHH
Confidence 011122223332 15668999999999999843 2335677789999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcC
Q 044513 435 AAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 435 aALl~~~~P~lt~~~i~~~L~~T 457 (457)
+|||+|++|+|+++|||++|++|
T Consensus 230 aAl~~~~~p~~~~~~i~~~L~~t 252 (254)
T cd07490 230 AALLAAAHPDLSPEQIKDALTET 252 (254)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHh
Confidence 99999999999999999999976
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3e-44 Score=342.05 Aligned_cols=244 Identities=31% Similarity=0.391 Sum_probs=203.1
Q ss_pred CcccccCCchhcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCC
Q 044513 19 RSWDFMGFSQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGP 98 (457)
Q Consensus 19 ~s~~~~~~~~~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (457)
+-++.++++ .+|+.+ +|+||+|+|||+|||++||+|... ++...+++.+..
T Consensus 11 w~~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-----------------------~~~~~~~~~~~~---- 61 (260)
T cd07484 11 WNLDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-----------------------KFVLGYDFVDND---- 61 (260)
T ss_pred CCccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-----------------------CcccceeccCCC----
Confidence 345667777 889888 999999999999999999998432 223333443331
Q ss_pred CCCCCCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEE
Q 044513 99 DDLPSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIIS 177 (457)
Q Consensus 99 ~~~~~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin 177 (457)
..+.+..+|||||||||++...+.. ++ .|+||+|+|+.+++++... ....++.++++++++.+++|||
T Consensus 62 ---~~~~d~~~HGT~vagii~~~~~~~~---~~-----~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin 130 (260)
T cd07484 62 ---SDAMDDNGHGTHVAGIIAAATNNGT---GV-----AGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVIN 130 (260)
T ss_pred ---CCCCCCCCcHHHHHHHHhCccCCCC---ce-----EeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEE
Confidence 2355678999999999998764432 22 8999999999999988754 5778899999999999999999
Q ss_pred ecCCCCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceec
Q 044513 178 LSLGSSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISI 257 (457)
Q Consensus 178 ~S~G~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~ 257 (457)
||||... ....+.++++.+.++|++||+||||++.....+++..+++|+||+.+.+
T Consensus 131 ~S~g~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------- 186 (260)
T cd07484 131 LSLGGGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------- 186 (260)
T ss_pred ecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------
Confidence 9999873 4467788888888999999999999999888999999999999985433
Q ss_pred ccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCC
Q 044513 258 NTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFS 337 (457)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 337 (457)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCC
Q 044513 338 FPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNP 417 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~ 417 (457)
+.++.||++|+.. |++|||..+.+.... ..
T Consensus 187 -----------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~-~~ 216 (260)
T cd07484 187 -----------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD-GD 216 (260)
T ss_pred -----------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-CC
Confidence 2457889999877 999999999988766 45
Q ss_pred CccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 418 VSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 418 ~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
|..++|||||||+|||++|||+|++| |+++|||++|++|
T Consensus 217 ~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~t 255 (260)
T cd07484 217 YAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKT 255 (260)
T ss_pred EEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHh
Confidence 66779999999999999999999999 9999999999876
No 22
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-44 Score=345.39 Aligned_cols=256 Identities=39% Similarity=0.566 Sum_probs=196.7
Q ss_pred CCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCC--------CCCCCCCCC
Q 044513 37 ESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPD--------DLPSPRDTD 108 (457)
Q Consensus 37 G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~d~~ 108 (457)
|+||+|+|||+|||++||+|.+..+ .+.++..+.+|......... ......+..
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF------------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDAT 62 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC------------------CCCceeeeeECccCCCCcccccccccccccCCCCCCC
Confidence 8999999999999999999975321 12344555555443211100 011244588
Q ss_pred CCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCC
Q 044513 109 GHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHE 187 (457)
Q Consensus 109 gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~ 187 (457)
+|||||||+|+|...+... +.|+||+|+|+.+|++.... ....+++++++++++.+++|||||||... .
T Consensus 63 ~HGT~vAgiiag~~~n~~~--------~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~ 132 (295)
T cd07474 63 GHGTHVAGIIAGNGVNVGT--------IKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--N 132 (295)
T ss_pred CcHHHHHHHHhcCCCccCc--------eEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--C
Confidence 9999999999998655322 38999999999999997443 58889999999999999999999999863 2
Q ss_pred CccchHHHHHHHhhhCCcEEEEecCCCCCCCCc--cCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCc
Q 044513 188 YFNDSIAIGTFHAMRNGILTSASAGNDGPSRST--ITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNV 265 (457)
Q Consensus 188 ~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~--~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (457)
...+.+.++++++.++|++||+||||+|..... .++..+++|+||+......
T Consensus 133 ~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~-------------------------- 186 (295)
T cd07474 133 GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV-------------------------- 186 (295)
T ss_pred CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc--------------------------
Confidence 245778888899999999999999999866544 3667899999998541100
Q ss_pred eeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEee
Q 044513 266 TYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYV 345 (457)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC-CCCccCCcc
Q 044513 346 DTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV-NPVSEVKGT 424 (457)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~-~~~~~~sGT 424 (457)
.........+++.|++. ..++||||+|||.+|.++.... ..+..++||
T Consensus 187 -----------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~~~~~~~~GT 235 (295)
T cd07474 187 -----------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSGTGYARMSGT 235 (295)
T ss_pred -----------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCCCceEEeccH
Confidence 00001223445556666 8899999999999999998763 456677999
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 425 SMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 425 SmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
|||||+|||++|||+|++|+|+++|||++|++|
T Consensus 236 S~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~t 268 (295)
T cd07474 236 SMAAPHVAGAAALLKQAHPDWSPAQIKAALMNT 268 (295)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999876
No 23
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=3.1e-44 Score=340.89 Aligned_cols=228 Identities=30% Similarity=0.458 Sum_probs=193.0
Q ss_pred cccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCC
Q 044513 30 VERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDG 109 (457)
Q Consensus 30 ~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~g 109 (457)
.+..+++|+||+|+|||+||+.+||+|.+. +.....+.... ...|..+
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~------------------------~~~~~~~~~~~--------~~~d~~~ 64 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR------------------------AIWGADFVGGD--------PDSDCNG 64 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC------------------------eeeeeecCCCC--------CCCCCCc
Confidence 788899999999999999999999999652 22333333321 2556889
Q ss_pred CcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHC-----CCcEEEecCCCC
Q 044513 110 HGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIAD-----GVDIISLSLGSS 183 (457)
Q Consensus 110 HGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~-----~~~Vin~S~G~~ 183 (457)
|||||||||+++. .||||+|+|+.+|+++..+ ...+.++++++++++. +++|||||||..
T Consensus 65 HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~ 130 (255)
T cd04077 65 HGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGG 130 (255)
T ss_pred cHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCC
Confidence 9999999999873 7899999999999998764 5778899999999986 489999999987
Q ss_pred CCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCC-CccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccC
Q 044513 184 NPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSR-STITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDL 262 (457)
Q Consensus 184 ~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~-~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (457)
. ...+..+++++.++|++||+||||++... ..+++..+++|+||+.+.+
T Consensus 131 ~-----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------- 180 (255)
T cd04077 131 A-----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------- 180 (255)
T ss_pred C-----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------------
Confidence 3 56788888899999999999999999765 4667888999999985433
Q ss_pred CCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcce
Q 044513 263 QNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPT 342 (457)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 342 (457)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecC-CCCCccC
Q 044513 343 SYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSP-VNPVSEV 421 (457)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~-~~~~~~~ 421 (457)
+.++.||++||.. ||+|||.+|.++... ...+..+
T Consensus 181 ------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~~~~~~~ 216 (255)
T cd04077 181 ------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGSDTATATL 216 (255)
T ss_pred ------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCCCCcEEee
Confidence 2357899999987 999999999998864 3567778
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
+|||||||+|||++|||+|++|+++++|||++|++|
T Consensus 217 ~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~t 252 (255)
T cd04077 217 SGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNL 252 (255)
T ss_pred CcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999976
No 24
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-44 Score=338.55 Aligned_cols=232 Identities=30% Similarity=0.384 Sum_probs=188.8
Q ss_pred eEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhcc
Q 044513 40 IVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAA 119 (457)
Q Consensus 40 v~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~a 119 (457)
|+|||||+|||++||+|.+.. +....| ++.... ....+..+|||||||||+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~--~~~~~~--------------------~~~~~~-------~~~~~~~~HGT~vAgiia 51 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP--KLVPGW--------------------NFVSNN-------DPTSDIDGHGTACAGVAA 51 (242)
T ss_pred CEEEEecCCCCCCChhhccCc--CccCCc--------------------cccCCC-------CCCCCCCCCHHHHHHHHH
Confidence 689999999999999997631 111111 221111 134568899999999999
Q ss_pred cccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHHHHH
Q 044513 120 GNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAIGTF 198 (457)
Q Consensus 120 g~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~ 198 (457)
|+..+.. + +.|+||+|+|+.+|++.... ....++.++++++.+.+++|||||||...........+.+++.
T Consensus 52 g~~~~~~---~-----~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~ 123 (242)
T cd07498 52 AVGNNGL---G-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAAT 123 (242)
T ss_pred hccCCCc---e-----eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHH
Confidence 9864432 2 28999999999999987654 4778899999999999999999999987554555677888888
Q ss_pred Hhhh-CCcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecCCCCC
Q 044513 199 HAMR-NGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAAN 277 (457)
Q Consensus 199 ~a~~-~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
++++ +|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 124 ~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------------------- 163 (242)
T cd07498 124 YGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------------------- 163 (242)
T ss_pred HHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------------------
Confidence 8888 99999999999998877788899999999985433
Q ss_pred CCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHH
Q 044513 278 ISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYI 357 (457)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (457)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecC--------CCCCccCCcchhhHH
Q 044513 358 NSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSP--------VNPVSEVKGTSMACP 429 (457)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~--------~~~~~~~sGTSmAaP 429 (457)
+.+++||++||.. |++|||.++...... ...+..++|||||||
T Consensus 164 ---------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap 214 (242)
T cd07498 164 ---------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASP 214 (242)
T ss_pred ---------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHH
Confidence 2457899999987 999999999887322 245666799999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 430 HVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 430 ~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
+|||++|||+|++|+|+++|||++|++|
T Consensus 215 ~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 215 VAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999987
No 25
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-44 Score=343.28 Aligned_cols=161 Identities=22% Similarity=0.294 Sum_probs=125.1
Q ss_pred cccCCchhcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCC
Q 044513 22 DFMGFSQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDL 101 (457)
Q Consensus 22 ~~~~~~~~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 101 (457)
+.++++ .+|++|++|+||+|+|||||||..|| |....+.. + ..+... ..
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~-------------------~----~~~~~~------~~ 54 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQV-------------------R----VVLAPG------AT 54 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCccc-------------------e----eecCCC------CC
Confidence 467777 89999999999999999999999898 65432210 0 001000 11
Q ss_pred CCCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHHCCCcEEEecCC
Q 044513 102 PSPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIADGVDIISLSLG 181 (457)
Q Consensus 102 ~~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G 181 (457)
....|+.|||||||+++ .||||+|+|+.+|+++. ....++++|+||++.+++|||||||
T Consensus 55 ~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG 113 (298)
T cd07494 55 DPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWG 113 (298)
T ss_pred CCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecc
Confidence 24457889999999876 57899999999999774 4567889999999999999999999
Q ss_pred CCCCCCC---------ccchHHHHHHHhhhCCcEEEEecCCCCCCCCccCCCCCCceEEEeeecC
Q 044513 182 SSNPHEY---------FNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTID 237 (457)
Q Consensus 182 ~~~~~~~---------~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~ 237 (457)
....... ....+.++++++.++|+++|+||||++. .+|+..+++|+||+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~ 175 (298)
T cd07494 114 YDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVD 175 (298)
T ss_pred cCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEecc
Confidence 8632211 2345788888899999999999999874 579999999999997543
No 26
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.1e-42 Score=325.09 Aligned_cols=226 Identities=34% Similarity=0.478 Sum_probs=186.2
Q ss_pred CeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhc
Q 044513 39 DIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTA 118 (457)
Q Consensus 39 gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 118 (457)
||+|+|||+||+.+||+|.+.. ....+|..+.. ....+..+||||||||+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~------------------------~~~~~~~~~~~------~~~~~~~~HGT~vA~ii 50 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNI------------------------VGGANFTGDDN------NDYQDGNGHGTHVAGII 50 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccc------------------------cCcccccCCCC------CCCCCCCCCHHHHHHHH
Confidence 7999999999999999997532 11223322210 24456889999999999
Q ss_pred ccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHHHH
Q 044513 119 AGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAIGT 197 (457)
Q Consensus 119 ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~ 197 (457)
++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.+++|||||||... ....+..++
T Consensus 51 ~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~ 117 (229)
T cd07477 51 AALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAI 117 (229)
T ss_pred hcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHH
Confidence 9986432 238999999999999988765 46688999999999999999999999763 235667777
Q ss_pred HHhhhCCcEEEEecCCCCCCCCcc--CCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecCCC
Q 044513 198 FHAMRNGILTSASAGNDGPSRSTI--TNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDA 275 (457)
Q Consensus 198 ~~a~~~gi~vV~AAGN~g~~~~~~--~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
.++.++|++||+||||++...... ++..+++|+||+.+.+
T Consensus 118 ~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------------------------- 159 (229)
T cd07477 118 KKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------------------------- 159 (229)
T ss_pred HHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------------------------
Confidence 888899999999999999776554 8889999999986533
Q ss_pred CCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHHHH
Q 044513 276 ANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILL 355 (457)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (457)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccCCcchhhHHHHHHHH
Q 044513 356 YINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAA 435 (457)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~sGTSmAaP~VAG~a 435 (457)
+.+..||++|+.. |++|||..|.++.+. +.+..++|||||||+|||++
T Consensus 160 -----------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-~~~~~~~GTS~Aap~vag~~ 207 (229)
T cd07477 160 -----------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-NDYAYLSGTSMATPHVAGVA 207 (229)
T ss_pred -----------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-CCEEEEccHHHHHHHHHHHH
Confidence 2456889999876 999999999998876 45667799999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHhcC
Q 044513 436 AYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 436 ALl~~~~P~lt~~~i~~~L~~T 457 (457)
|||+|++|+|+++|||++|++|
T Consensus 208 All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 208 ALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999987
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1e-42 Score=331.78 Aligned_cols=237 Identities=19% Similarity=0.175 Sum_probs=174.5
Q ss_pred cCCchhcccC-CCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCC
Q 044513 24 MGFSQQVERS-TTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLP 102 (457)
Q Consensus 24 ~~~~~~~~~~-g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 102 (457)
|+++ .+|+. +.+|+||+|+|||+|||.+||+|.+..... ... .
T Consensus 2 i~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~---------------------------~~~--------~ 45 (277)
T cd04843 2 INAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL---------------------------ISG--------L 45 (277)
T ss_pred CChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc---------------------------cCC--------C
Confidence 3555 67776 445999999999999999999997643210 000 1
Q ss_pred CCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHH----CCCcEEEe
Q 044513 103 SPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIA----DGVDIISL 178 (457)
Q Consensus 103 ~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~----~~~~Vin~ 178 (457)
...|..+|||||||||++.. + .+|+ .||||+|+|+.+|+++ .++++++|.+|++ .++.+|||
T Consensus 46 ~~~d~~gHGT~VAGiIaa~~-n---~~G~-----~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~ 111 (277)
T cd04843 46 TDQADSDHGTAVLGIIVAKD-N---GIGV-----TGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEM 111 (277)
T ss_pred CCCCCCCCcchhheeeeeec-C---CCce-----eeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEc
Confidence 24567899999999999873 2 2344 8999999999999976 3346667777766 34578899
Q ss_pred cCCCCCCCC-----CccchHHHHHHHhhhCCcEEEEecCCCCCCCCcc------------CC-CCCCceEEEeeecCcee
Q 044513 179 SLGSSNPHE-----YFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTI------------TN-VAPWFISVAASTIDRKF 240 (457)
Q Consensus 179 S~G~~~~~~-----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~------------~~-~~~~~i~Vga~~~~~~~ 240 (457)
|||...... .....+..++.++.++|+++|+||||++...... +. ..+++|+||+.+.+
T Consensus 112 s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~--- 188 (277)
T cd04843 112 QTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST--- 188 (277)
T ss_pred cccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC---
Confidence 999863221 1234556678888899999999999998653111 11 12457777664322
Q ss_pred eeeEEeCCCceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCC
Q 044513 241 STKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAG 320 (457)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g 320 (457)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCc
Q 044513 321 AVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPD 400 (457)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPd 400 (457)
....++.||++|+.. |
T Consensus 189 --------------------------------------------------------~~~~~~~fSn~G~~v--------d 204 (277)
T cd04843 189 --------------------------------------------------------TGHTRLAFSNYGSRV--------D 204 (277)
T ss_pred --------------------------------------------------------CCCccccccCCCCcc--------c
Confidence 001268999999987 9
Q ss_pred eeecCccEEeeecCCC---------CCccCCcchhhHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhcC
Q 044513 401 ISAPGIDILAAWSPVN---------PVSEVKGTSMACPHVTGAAAYIKSF-----HPTWSPAAIKSALMTT 457 (457)
Q Consensus 401 i~APG~~i~s~~~~~~---------~~~~~sGTSmAaP~VAG~aALl~~~-----~P~lt~~~i~~~L~~T 457 (457)
|+|||++|+++..... ++..++|||||||+|||++|||++. +|+|+++|||++|++|
T Consensus 205 i~APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t 275 (277)
T cd04843 205 VYGWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTAT 275 (277)
T ss_pred eEcCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc
Confidence 9999999999976532 3456799999999999999999753 4999999999999986
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-42 Score=328.01 Aligned_cols=249 Identities=30% Similarity=0.414 Sum_probs=189.0
Q ss_pred CCeEEEEeecccCCCCCCCCCCCCCCC-CCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhh
Q 044513 38 SDIVIGVFDTGIWPESESFNGTGFGPP-PTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTAS 116 (457)
Q Consensus 38 ~gv~V~ViDtGid~~Hp~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 116 (457)
+||+|+|||+|||++||+|.+..+... ...+.+....+..+. . ...+++|.. ....+.|..+|||||||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~-------~~~~~~d~~~HGT~va~ 71 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYV--D-DIYGWNFVN-------NDNDPMDDNGHGTHVAG 71 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcc--c-CCCcccccC-------CCCCCCCCCCcHHHHHH
Confidence 689999999999999999987543211 111111111111110 0 011111111 12355678999999999
Q ss_pred hcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHH
Q 044513 117 TAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAI 195 (457)
Q Consensus 117 i~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~ 195 (457)
||+|...+... +.|+||+|+|+.+|++...+ ....+++++++++++.+++|||+|||.... ...+.+
T Consensus 72 ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~ 139 (259)
T cd07473 72 IIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRD 139 (259)
T ss_pred HHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHH
Confidence 99998755432 38999999999999988766 578899999999999999999999998733 567788
Q ss_pred HHHHhhhCCcEEEEecCCCCCC---CCccCC--CCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeE
Q 044513 196 GTFHAMRNGILTSASAGNDGPS---RSTITN--VAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLI 270 (457)
Q Consensus 196 ~~~~a~~~gi~vV~AAGN~g~~---~~~~~~--~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (457)
++.++.++|++||+||||++.. ...++. ..+++|+||+.+.+
T Consensus 140 ~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~--------------------------------- 186 (259)
T cd07473 140 AIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN--------------------------------- 186 (259)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC---------------------------------
Confidence 8888899999999999999876 234444 34788888875433
Q ss_pred ecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccH
Q 044513 271 YGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDG 350 (457)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (457)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccCCcchhhHHH
Q 044513 351 SDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPH 430 (457)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~sGTSmAaP~ 430 (457)
+.++.||++||.. ||++|||.++++.... ..+..++|||||||+
T Consensus 187 ----------------------------~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~-~~~~~~~GTS~AaP~ 230 (259)
T cd07473 187 ----------------------------DALASFSNYGKKT-------VDLAAPGVDILSTSPG-GGYGYMSGTSMATPH 230 (259)
T ss_pred ----------------------------CCcCcccCCCCCC-------cEEEeccCCeEeccCC-CcEEEeccHhHHHHH
Confidence 2456789998864 6999999999997654 567778999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 431 VTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 431 VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
|||++|||+|++|.|+++|||++|++|
T Consensus 231 vaG~~All~~~~~~~t~~~v~~~L~~t 257 (259)
T cd07473 231 VAGAAALLLSLNPNLTAAQIKDAILSS 257 (259)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999876
No 29
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=2.2e-42 Score=335.34 Aligned_cols=151 Identities=28% Similarity=0.324 Sum_probs=107.8
Q ss_pred CeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhc
Q 044513 39 DIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTA 118 (457)
Q Consensus 39 gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 118 (457)
.|+|||||+|||++||+|.+....... .+ .....+.......+.+.....|..+|||||||+|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgii 63 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSK-NL----------------VPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQI 63 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccccc-cc----------------ccCCCcCCccccccCCCCcCCCCCCcHhHHHHHH
Confidence 489999999999999999863211100 00 0000010000011111234456789999999999
Q ss_pred ccccCccccccccCCcccccccccccEEEeeeecCCCC-CHHHHHHHHHHHHHCCCcEEEecCCCCCCCCC-------cc
Q 044513 119 AGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGC-DDADILAAFDDAIADGVDIISLSLGSSNPHEY-------FN 190 (457)
Q Consensus 119 ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~-------~~ 190 (457)
+|.... .||||+|+|+.+|+++..+. ...+++++|++|++.+++|||||||....... ..
T Consensus 64 a~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~ 131 (294)
T cd07482 64 AANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEY 131 (294)
T ss_pred hcCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhh
Confidence 987432 59999999999999987765 88899999999999999999999997532221 12
Q ss_pred chHHHHHHHhhhCCcEEEEecCCCCCCC
Q 044513 191 DSIAIGTFHAMRNGILTSASAGNDGPSR 218 (457)
Q Consensus 191 ~~~~~~~~~a~~~gi~vV~AAGN~g~~~ 218 (457)
..+.++++++.++|++||+||||+|...
T Consensus 132 ~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 132 NAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 4567777788889999999999998653
No 30
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=4.4e-42 Score=333.64 Aligned_cols=250 Identities=20% Similarity=0.150 Sum_probs=181.5
Q ss_pred ccCCchhcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCC
Q 044513 23 FMGFSQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLP 102 (457)
Q Consensus 23 ~~~~~~~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 102 (457)
.+++. .+|+.+++|+||+|+|||+|||++||+|.+..... ..++|...... ...
T Consensus 25 ~~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~----------------------~~~~~~~~~~~---~~~ 78 (297)
T cd04059 25 DLNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPE----------------------ASYDFNDNDPD---PTP 78 (297)
T ss_pred CcccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhccccc----------------------ccccccCCCCC---CCC
Confidence 45555 89999999999999999999999999997643210 11122221100 001
Q ss_pred CCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHHCCCcEEEecCCC
Q 044513 103 SPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIADGVDIISLSLGS 182 (457)
Q Consensus 103 ~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~ 182 (457)
...+..+|||||||||+|...+.. |. .||||+|+|+.+|+++.. ........++.++.+ .++|||||||.
T Consensus 79 ~~~~~~gHGT~vAgiiag~~~~~~---~~-----~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~ 148 (297)
T cd04059 79 RYDDDNSHGTRCAGEIAAVGNNGI---CG-----VGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGP 148 (297)
T ss_pred ccccccccCcceeeEEEeecCCCc---cc-----ccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCC
Confidence 112688999999999999864432 22 899999999999998765 233344455555443 46999999997
Q ss_pred CCCCC---CccchHHHHHHHhhh-----CCcEEEEecCCCCCCCC----ccCCCCCCceEEEeeecCceeeeeEEeCCCc
Q 044513 183 SNPHE---YFNDSIAIGTFHAMR-----NGILTSASAGNDGPSRS----TITNVAPWFISVAASTIDRKFSTKVQLGNNN 250 (457)
Q Consensus 183 ~~~~~---~~~~~~~~~~~~a~~-----~gi~vV~AAGN~g~~~~----~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~ 250 (457)
..... .....+.+++.++.+ +|++||+||||+|.... ......+++|+||+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~------------- 215 (297)
T cd04059 149 DDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN------------- 215 (297)
T ss_pred CCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC-------------
Confidence 64322 122334444444443 69999999999997321 222456789999885433
Q ss_pred eeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCC
Q 044513 251 IYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQR 330 (457)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (457)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCcc---
Q 044513 331 RRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGID--- 407 (457)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~--- 407 (457)
+.++.||++|+.. +++|||..
T Consensus 216 ------------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~ 239 (297)
T cd04059 216 ------------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGN 239 (297)
T ss_pred ------------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCC
Confidence 3467889999987 89999987
Q ss_pred ----EEeeecC--CCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 408 ----ILAAWSP--VNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 408 ----i~s~~~~--~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
|.++... ...+..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 240 ~~~~i~~~~~~~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~T 295 (297)
T cd04059 240 PEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALT 295 (297)
T ss_pred CCCceEeCCCCCCCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHh
Confidence 7777766 3566778999999999999999999999999999999999986
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.2e-42 Score=322.40 Aligned_cols=214 Identities=22% Similarity=0.245 Sum_probs=166.5
Q ss_pred CCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhh
Q 044513 37 ESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTAS 116 (457)
Q Consensus 37 G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAG 116 (457)
+++|+|||||+|||++||+|.+... .+++|...........+...|..+|||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~------------------------~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAg 57 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKII------------------------GGKSFSPYEGDGNKVSPYYVSADGHGTAMAR 57 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccc------------------------cCCCCCCCCCCcccCCCCCCCCCCcHHHHHH
Confidence 7899999999999999999976321 1122222111000001123468899999999
Q ss_pred hcccccCccccccccCCcccccccccccEEEeeeecCCC-------CCHHHHHHHHHHHHHCCCcEEEecCCCCCCC--C
Q 044513 117 TAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-------CDDADILAAFDDAIADGVDIISLSLGSSNPH--E 187 (457)
Q Consensus 117 i~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-------~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~--~ 187 (457)
||+ |+||+|+|+.+|+++..+ .....+++||+||++++++|||||||..... .
T Consensus 58 iI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~ 119 (247)
T cd07491 58 MIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDND 119 (247)
T ss_pred HHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccc
Confidence 994 569999999999988643 3567899999999999999999999986321 1
Q ss_pred CccchHHHHHHHhhhCCcEEEEecCCCCCCCC---ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCC
Q 044513 188 YFNDSIAIGTFHAMRNGILTSASAGNDGPSRS---TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQN 264 (457)
Q Consensus 188 ~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (457)
.....+.+++.+|.++|+++|+||||++.... ..++..+++|+||+.+.+
T Consensus 120 ~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------------------- 172 (247)
T cd07491 120 NDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------------------- 172 (247)
T ss_pred cchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC---------------------------
Confidence 23578888999999999999999999997653 334677899999986544
Q ss_pred ceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEe
Q 044513 265 VTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSY 344 (457)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecC--CCCCccCC
Q 044513 345 VDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSP--VNPVSEVK 422 (457)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~--~~~~~~~s 422 (457)
+.++.||++|+.. |++|||++|.++.+. .+.|..++
T Consensus 173 ----------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~~~~~~~~s 210 (247)
T cd07491 173 ----------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPPLSNSFVTHT 210 (247)
T ss_pred ----------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCCCCCCeeeec
Confidence 2457789999887 999999999998752 35677889
Q ss_pred cchhhHHHHHHHHHHHHHh
Q 044513 423 GTSMACPHVTGAAAYIKSF 441 (457)
Q Consensus 423 GTSmAaP~VAG~aALl~~~ 441 (457)
|||||||+|||++|||++.
T Consensus 211 GTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 211 GSSVATALAAGLAALILYC 229 (247)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999985
No 32
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.3e-42 Score=330.64 Aligned_cols=237 Identities=32% Similarity=0.415 Sum_probs=171.3
Q ss_pred cCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCc
Q 044513 32 RSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHG 111 (457)
Q Consensus 32 ~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHG 111 (457)
+.+++|+||+|+|||+|||.+||+|.+... ...+|... ....|..+||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~------------------------~~~~~~~~--------~~~~d~~gHG 49 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI------------------------TTKSFVGG--------EDVQDGHGHG 49 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc------------------------cCcccCCC--------CCCCCCCCcH
Confidence 568999999999999999999999976432 11223222 1245688999
Q ss_pred chhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCC-----
Q 044513 112 SHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNP----- 185 (457)
Q Consensus 112 ThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~----- 185 (457)
|||||||+|+..+ +.+.||||+|+|+.+|++.... .....++++|+|+++.+++|||||||....
T Consensus 50 T~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~ 120 (297)
T cd07480 50 THCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQ 120 (297)
T ss_pred HHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccc
Confidence 9999999998644 2237999999999999987644 466779999999999999999999998631
Q ss_pred ---C-CCccchHHHHHHHh---------------hhCCcEEEEecCCCCCCCCccC-----CCCCCceEEEeeecCceee
Q 044513 186 ---H-EYFNDSIAIGTFHA---------------MRNGILTSASAGNDGPSRSTIT-----NVAPWFISVAASTIDRKFS 241 (457)
Q Consensus 186 ---~-~~~~~~~~~~~~~a---------------~~~gi~vV~AAGN~g~~~~~~~-----~~~~~~i~Vga~~~~~~~~ 241 (457)
. ......++...+.+ .++|++||+||||++....... ...++++.|++....
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~---- 196 (297)
T cd07480 121 GWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL---- 196 (297)
T ss_pred cCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----
Confidence 1 11122333333333 6799999999999985432211 122344444433221
Q ss_pred eeEEeCCCceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCc
Q 044513 242 TKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGA 321 (457)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~ 321 (457)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCce
Q 044513 322 VGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDI 401 (457)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi 401 (457)
.....+++..+ ....||||
T Consensus 197 ---------------------------------------------------------~~~~~~~~~~~----~~~~~~dv 215 (297)
T cd07480 197 ---------------------------------------------------------GRTGNFSAVAN----FSNGEVDI 215 (297)
T ss_pred ---------------------------------------------------------CCCCCccccCC----CCCCceEE
Confidence 01112222222 23357899
Q ss_pred eecCccEEeeecCCCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 044513 402 SAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALM 455 (457)
Q Consensus 402 ~APG~~i~s~~~~~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~ 455 (457)
+|||.+|.++... +.|..++|||||||+|||++|||+|++|.+++.+++++|+
T Consensus 216 ~ApG~~i~s~~~~-~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~ 268 (297)
T cd07480 216 AAPGVDIVSAAPG-GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQ 268 (297)
T ss_pred EeCCCCeEeecCC-CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 9999999998866 4677789999999999999999999999999999999887
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.4e-41 Score=311.12 Aligned_cols=219 Identities=25% Similarity=0.260 Sum_probs=171.6
Q ss_pred CeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhc
Q 044513 39 DIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTA 118 (457)
Q Consensus 39 gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~ 118 (457)
||+|||||+|||++||+|.+..... ..+.... .........|..+|||||||||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~------------------------~~~~~~~--~~~~~~~~~d~~gHGT~vAgii 54 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDG------------------------EVTIDLE--IIVVSAEGGDKDGHGTACAGII 54 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccccc------------------------ccccccc--cccCCCCCCCCCCcHHHHHHHH
Confidence 7999999999999999997643210 0010000 0001134557889999999999
Q ss_pred ccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCCccchHHHHH
Q 044513 119 AGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLGSSNPHEYFNDSIAIGT 197 (457)
Q Consensus 119 ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~ 197 (457)
++. +|+++|+.+|+++..+ ...+.+.++++|+++.+++|||||||.... .....+.+++
T Consensus 55 a~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~--~~~~~~~~~~ 114 (222)
T cd07492 55 KKY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD--RDFPLLKELL 114 (222)
T ss_pred Hcc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--CcCHHHHHHH
Confidence 765 7999999999998766 578889999999999999999999998732 2346778888
Q ss_pred HHhhhCCcEEEEecCCCCCCCCccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecCCCCC
Q 044513 198 FHAMRNGILTSASAGNDGPSRSTITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGGDAAN 277 (457)
Q Consensus 198 ~~a~~~gi~vV~AAGN~g~~~~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (457)
+++.++|+++|+||||++... .+++..+++|+|++...+.
T Consensus 115 ~~a~~~g~l~V~aagN~~~~~-~~Pa~~~~vi~V~~~~~~~--------------------------------------- 154 (222)
T cd07492 115 EYAYKAGGIIVAAAPNNNDIG-TPPASFPNVIGVKSDTADD--------------------------------------- 154 (222)
T ss_pred HHHHHCCCEEEEECCCCCCCC-CCCccCCceEEEEecCCCC---------------------------------------
Confidence 888899999999999998754 3478888999998743220
Q ss_pred CCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHHHHHH
Q 044513 278 ISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDILLYI 357 (457)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (457)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCCCCccCCcchhhHHHHHHHHHH
Q 044513 358 NSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVNPVSEVKGTSMACPHVTGAAAY 437 (457)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~~~~~~sGTSmAaP~VAG~aAL 437 (457)
.. +.+++. ++++|||.+|.++.+. +.|..++|||||||+|||++||
T Consensus 155 ----------------------~~---~~~~~~--------~~~~apg~~i~~~~~~-~~~~~~~GTS~Aap~vaG~~Al 200 (222)
T cd07492 155 ----------------------PK---SFWYIY--------VEFSADGVDIIAPAPH-GRYLTVSGNSFAAPHVTGMVAL 200 (222)
T ss_pred ----------------------Cc---ccccCC--------ceEEeCCCCeEeecCC-CCEEEeccHHHHHHHHHHHHHH
Confidence 00 111333 4999999999998876 4566779999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHhcC
Q 044513 438 IKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 438 l~~~~P~lt~~~i~~~L~~T 457 (457)
|+|++|+|+++|||++|++|
T Consensus 201 l~~~~p~l~~~~v~~~L~~t 220 (222)
T cd07492 201 LLSEKPDIDANDLKRLLQRL 220 (222)
T ss_pred HHHhCCCCCHHHHHHHHHHh
Confidence 99999999999999999876
No 34
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=4.2e-40 Score=314.70 Aligned_cols=240 Identities=29% Similarity=0.364 Sum_probs=184.4
Q ss_pred CCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhh
Q 044513 36 EESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTA 115 (457)
Q Consensus 36 ~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVA 115 (457)
||+||+|+|||+||+.+||+|.+.........+ ... .......+..+||||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~-----------------------~~~----~~~~~~~~~~~HGT~va 53 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVA-----------------------VND----AGYASNGDGDSHGTHVA 53 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccc-----------------------ccc----ccCCCCCCCCChHHHHH
Confidence 699999999999999999999874321110000 000 00123456789999999
Q ss_pred hhcccccCccccccccCCcccccccccccEEEeeeecCCC--CCHHHHHHHHHHHHHCCCcEEEecCCCCCCCC------
Q 044513 116 STAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG--CDDADILAAFDDAIADGVDIISLSLGSSNPHE------ 187 (457)
Q Consensus 116 Gi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~--~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~------ 187 (457)
|||+|+..+ ..+.|+||+|+|+.+|+++..+ .....+.++++++.+.+++|||||||......
T Consensus 54 giiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~ 124 (267)
T cd04848 54 GVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTY 124 (267)
T ss_pred HHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccch
Confidence 999998644 1238999999999999998764 46678889999999999999999999874322
Q ss_pred -----CccchHHHHHHHhhhCCcEEEEecCCCCCCCCcc---------CCCCCCceEEEeeecCceeeeeEEeCCCceee
Q 044513 188 -----YFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTI---------TNVAPWFISVAASTIDRKFSTKVQLGNNNIYE 253 (457)
Q Consensus 188 -----~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~---------~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~ 253 (457)
.....+..+++++.++|++||+||||++...... ++..+++|+||+.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~--------------- 189 (267)
T cd04848 125 KGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG--------------- 189 (267)
T ss_pred hhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC---------------
Confidence 2456777788888899999999999998654333 23457889998865441
Q ss_pred ceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCC
Q 044513 254 GISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRD 333 (457)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 333 (457)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCcccc--ccCCCCCCCCCCCCCCceeecCccEEee
Q 044513 334 RAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGS--LSSRGPNPITPDILKPDISAPGIDILAA 411 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Ss~Gp~~~~~~~~KPdi~APG~~i~s~ 411 (457)
.... ||++|+.. ..++++|||.+|.+.
T Consensus 190 ----------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~ 218 (267)
T cd04848 190 ----------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYST 218 (267)
T ss_pred ----------------------------------------------Ccccccccccchhh-----hhheeecCcCceeec
Confidence 1222 37777543 234799999999999
Q ss_pred ecC-CCCCccCCcchhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 412 WSP-VNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 412 ~~~-~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
.+. ...+..++|||||||+|||++|||+|++|.|+++|||++|++|
T Consensus 219 ~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~t 265 (267)
T cd04848 219 DPDGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTT 265 (267)
T ss_pred ccCCCCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhh
Confidence 873 3567778999999999999999999999999999999999986
No 35
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.7e-39 Score=311.77 Aligned_cols=245 Identities=35% Similarity=0.519 Sum_probs=189.5
Q ss_pred EEEEeecccCCCCCCCC-CCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhcc
Q 044513 41 VIGVFDTGIWPESESFN-GTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAA 119 (457)
Q Consensus 41 ~V~ViDtGid~~Hp~f~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~a 119 (457)
+|||||+|||++||+|. ..- ...++...+.|..+. .......+..+|||||||||+
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-------------------~~~~~~~~~~~~~~~----~~~~~~~~~~~HGT~va~ii~ 57 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-------------------IWSKVPGGYNFVDGN----PNPSPSDDDNGHGTHVAGIIA 57 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-------------------EEEEEEEEEETTTTB----STTTSSSTSSSHHHHHHHHHH
T ss_pred CEEEEcCCcCCCChhHccCCc-------------------ccccccceeeccCCC----CCcCccccCCCccchhhhhcc
Confidence 69999999999999997 211 012344566666553 112345668899999999999
Q ss_pred cccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHH-HCCCcEEEecCCCCC--CCCCccchHHHH
Q 044513 120 GNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAI-ADGVDIISLSLGSSN--PHEYFNDSIAIG 196 (457)
Q Consensus 120 g~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~-~~~~~Vin~S~G~~~--~~~~~~~~~~~~ 196 (457)
+.. . ....+ +.|+||+|+|+.+|+++..+.....+++++++++ +.+++|||||||... ........+..+
T Consensus 58 ~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~ 130 (282)
T PF00082_consen 58 GNG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEA 130 (282)
T ss_dssp HTT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHH
T ss_pred ccc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccc
Confidence 997 2 22222 2899999999999998776677788999999999 889999999999832 122233456667
Q ss_pred HHHhhhCCcEEEEecCCCCCCCC---ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecC
Q 044513 197 TFHAMRNGILTSASAGNDGPSRS---TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGG 273 (457)
Q Consensus 197 ~~~a~~~gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (457)
++.+.++|+++|+||||++.... ..++..+++|+||+....
T Consensus 131 ~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------------------------ 174 (282)
T PF00082_consen 131 IDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------------------------ 174 (282)
T ss_dssp HHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT------------------------------------
T ss_pred cccccccCcceeeccccccccccccccccccccccccccccccc------------------------------------
Confidence 77888999999999999987664 467777899999986533
Q ss_pred CCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHH
Q 044513 274 DAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDI 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (457)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCCC--CCccCCcchhhHHHH
Q 044513 354 LLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPVN--PVSEVKGTSMACPHV 431 (457)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~~--~~~~~sGTSmAaP~V 431 (457)
+.+..||++|+.. .+++.||||+|||.++.+..+... .+...+|||||||+|
T Consensus 175 -------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~v 228 (282)
T PF00082_consen 175 -------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVV 228 (282)
T ss_dssp -------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTESEEEEEEESHHHHHHHH
T ss_pred -------------------------ccccccccccccc-cccccccccccccccccccccccccccccccCcCCchHHHH
Confidence 1357888886443 288999999999999988887653 355579999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 432 TGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 432 AG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
||++|||+|++|+++++|||++|++|
T Consensus 229 ag~~All~~~~p~~~~~~i~~~l~~t 254 (282)
T PF00082_consen 229 AGAAALLLSKYPNLTPAEIKALLINT 254 (282)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999864
No 36
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-38 Score=299.35 Aligned_cols=221 Identities=29% Similarity=0.458 Sum_probs=185.3
Q ss_pred CCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchh
Q 044513 35 TEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHT 114 (457)
Q Consensus 35 ~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThV 114 (457)
-.|+||..-|+||||+..||+|.++. .|=-.+.+ . ....|++||||||
T Consensus 216 ~aG~gvtaYv~DTGVni~H~dFegRa------~wGa~i~~-----------------~---------~~~~D~nGHGTH~ 263 (501)
T KOG1153|consen 216 DAGKGVTAYVLDTGVNIEHPDFEGRA------IWGATIPP-----------------K---------DGDEDCNGHGTHV 263 (501)
T ss_pred ccCCCeEEEEecccccccccccccce------ecccccCC-----------------C---------CcccccCCCccee
Confidence 38999999999999999999998742 22111110 1 2456799999999
Q ss_pred hhhcccccCccccccccCCcccccccccccEEEeeeecCCCC-CHHHHHHHHHHHHHC---------CCcEEEecCCCCC
Q 044513 115 ASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGC-DDADILAAFDDAIAD---------GVDIISLSLGSSN 184 (457)
Q Consensus 115 AGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~-~~~~i~~ai~~a~~~---------~~~Vin~S~G~~~ 184 (457)
||+|+++. .|||-+++|+.+||++++++ ..++++++++++.+. +..|.|||+|+..
T Consensus 264 AG~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~ 329 (501)
T KOG1153|consen 264 AGLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR 329 (501)
T ss_pred eeeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc
Confidence 99999996 78899999999999999885 999999999999876 4699999999872
Q ss_pred CCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCC-ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCC
Q 044513 185 PHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRS-TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQ 263 (457)
Q Consensus 185 ~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~-~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (457)
.-++..|++.|.+.|+.|++||||+..+.+ ..|+.++++|+|||++..
T Consensus 330 -----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~-------------------------- 378 (501)
T KOG1153|consen 330 -----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN-------------------------- 378 (501)
T ss_pred -----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc--------------------------
Confidence 247888999999999999999999987665 566889999999997544
Q ss_pred CceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceE
Q 044513 264 NVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTS 343 (457)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 343 (457)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC-CCCccCC
Q 044513 344 YVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV-NPVSEVK 422 (457)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~-~~~~~~s 422 (457)
..++.||+||+.. ||.|||.+|.|++-+. +.....+
T Consensus 379 -----------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~at~ilS 415 (501)
T KOG1153|consen 379 -----------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNNATAILS 415 (501)
T ss_pred -----------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCccchheee
Confidence 2579999999999 9999999999999876 3444569
Q ss_pred cchhhHHHHHHHHHHHHHhCC---------CCCHHHHHHHHh
Q 044513 423 GTSMACPHVTGAAAYIKSFHP---------TWSPAAIKSALM 455 (457)
Q Consensus 423 GTSmAaP~VAG~aALl~~~~P---------~lt~~~i~~~L~ 455 (457)
|||||+|||||++|..++..| -.++.++|..++
T Consensus 416 GTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l 457 (501)
T KOG1153|consen 416 GTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLL 457 (501)
T ss_pred cccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhh
Confidence 999999999999999999988 338888887664
No 37
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-35 Score=274.89 Aligned_cols=193 Identities=22% Similarity=0.223 Sum_probs=143.1
Q ss_pred CCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHH--HHCCCcEEEecCC
Q 044513 104 PRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDA--IADGVDIISLSLG 181 (457)
Q Consensus 104 ~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a--~~~~~~Vin~S~G 181 (457)
..|..+|||||||||+|. .|++|+++|+..++... ....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~~---~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGIK---SNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCCC---CCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 446899999999999998 45689999987665322 222355677777 5678999999999
Q ss_pred CCCCCC-----CccchHHHHHHHhhhC-CcEEEEecCCCCCCC-----CccCCCCCCceEEEeeecCceeeeeEEeCCCc
Q 044513 182 SSNPHE-----YFNDSIAIGTFHAMRN-GILTSASAGNDGPSR-----STITNVAPWFISVAASTIDRKFSTKVQLGNNN 250 (457)
Q Consensus 182 ~~~~~~-----~~~~~~~~~~~~a~~~-gi~vV~AAGN~g~~~-----~~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~ 250 (457)
...... ...+.+.++++++.++ |+++|+||||+|... ...++..+++|+||+.+.....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---------- 164 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---------- 164 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----------
Confidence 864332 2345677778887666 999999999999743 2345677899999986544100
Q ss_pred eeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCC
Q 044513 251 IYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQR 330 (457)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (457)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccC--CCCCCCCCCCCCCceeecCccE
Q 044513 331 RRDRAFSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSS--RGPNPITPDILKPDISAPGIDI 408 (457)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss--~Gp~~~~~~~~KPdi~APG~~i 408 (457)
...+.||+ ++|+. +++.||||+|||++|
T Consensus 165 ------------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i 194 (247)
T cd07488 165 ------------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNY 194 (247)
T ss_pred ------------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeE
Confidence 01234444 45555 888999999999999
Q ss_pred EeeecCCCCCccCCcchhhHHHHHHHHHHHHHhCCCCCH------HHHHHHHhcC
Q 044513 409 LAAWSPVNPVSEVKGTSMACPHVTGAAAYIKSFHPTWSP------AAIKSALMTT 457 (457)
Q Consensus 409 ~s~~~~~~~~~~~sGTSmAaP~VAG~aALl~~~~P~lt~------~~i~~~L~~T 457 (457)
.+ + .+.+..++|||||||+|||++|||+|++|++.+ -++|.+|.+|
T Consensus 195 ~s--~-~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--P-DGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--C-CCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 3 345677899999999999999999999987764 4566666654
No 38
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-35 Score=283.97 Aligned_cols=243 Identities=25% Similarity=0.407 Sum_probs=199.7
Q ss_pred ccCCchhcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCC
Q 044513 23 FMGFSQQVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLP 102 (457)
Q Consensus 23 ~~~~~~~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 102 (457)
.++++ .+|++|+||++|+|||+|||+..+||.|+. +....+++++ .
T Consensus 187 ~l~Ad-~LWk~GyTGa~VkvAiFDTGl~~~HPHFrn-------------------------vKERTNWTNE--------~ 232 (1033)
T KOG4266|consen 187 MLGAD-HLWKKGYTGAKVKVAIFDTGLRADHPHFRN-------------------------VKERTNWTNE--------D 232 (1033)
T ss_pred Hhchh-hHHhccccCCceEEEEeecccccCCccccc-------------------------hhhhcCCcCc--------c
Confidence 45555 799999999999999999999999999953 3344455555 4
Q ss_pred CCCCCCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHHHCCCcEEEecCC
Q 044513 103 SPRDTDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAIADGVDIISLSLG 181 (457)
Q Consensus 103 ~~~d~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~~~~~~Vin~S~G 181 (457)
+..|..||||.|||+|||.. +. .|.||+++|+.+|++.+.. +..+.+++||+||+..+.+|+|+|.|
T Consensus 233 tLdD~lgHGTFVAGvia~~~-ec-----------~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIG 300 (1033)
T KOG4266|consen 233 TLDDNLGHGTFVAGVIAGRN-EC-----------LGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIG 300 (1033)
T ss_pred ccccCcccceeEeeeeccch-hh-----------cccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccC
Confidence 67789999999999999885 21 7889999999999998876 68899999999999999999999999
Q ss_pred CCCCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCCccCC--CCCCceEEEeeecCceeeeeEEeCCCceeeceeccc
Q 044513 182 SSNPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITN--VAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINT 259 (457)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~~--~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (457)
++ .+.+.++-+.+.++..+++++|.|+||+|+...+..+ +...++.||..+.+
T Consensus 301 GP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdfd---------------------- 355 (1033)
T KOG4266|consen 301 GP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDFD---------------------- 355 (1033)
T ss_pred Cc---ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeecccccc----------------------
Confidence 87 5677888888888899999999999999987665554 44556666653322
Q ss_pred ccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCC
Q 044513 260 YDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFP 339 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 339 (457)
T Consensus 356 -------------------------------------------------------------------------------- 355 (1033)
T KOG4266|consen 356 -------------------------------------------------------------------------------- 355 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCC----CCCCCCCceeecCccEEeeecCC
Q 044513 340 LPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPI----TPDILKPDISAPGIDILAAWSPV 415 (457)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~----~~~~~KPdi~APG~~i~s~~~~~ 415 (457)
..++.|||||-+.. ..||+||||++-|..|....-.+
T Consensus 356 ---------------------------------------D~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~ 396 (1033)
T KOG4266|consen 356 ---------------------------------------DHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST 396 (1033)
T ss_pred ---------------------------------------chhhhhccCCcceeecCCcccccCCceEeeccccccCcccc
Confidence 35789999997753 58999999999999998777664
Q ss_pred CCCccCCcchhhHHHHHHHHHHHHH----hCCCCCHHHHHHHHhc
Q 044513 416 NPVSEVKGTSMACPHVTGAAAYIKS----FHPTWSPAAIKSALMT 456 (457)
Q Consensus 416 ~~~~~~sGTSmAaP~VAG~aALl~~----~~P~lt~~~i~~~L~~ 456 (457)
+.- ..||||.|+|.|||+++||.+ +.--++|+.+|++|+.
T Consensus 397 GCr-~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLie 440 (1033)
T KOG4266|consen 397 GCR-SLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIE 440 (1033)
T ss_pred cch-hccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHh
Confidence 433 349999999999999999976 3446799999999875
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=3.2e-33 Score=262.04 Aligned_cols=233 Identities=33% Similarity=0.464 Sum_probs=176.9
Q ss_pred eEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCCCCcchhhhhcc
Q 044513 40 IVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTDGHGSHTASTAA 119 (457)
Q Consensus 40 v~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi~a 119 (457)
|+|+|||+|++.+||+|..... ......++.... .......+..+||||||++++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~---------------------~~~~~~~~~~~~----~~~~~~~~~~~HGt~va~~i~ 55 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFG---------------------GGDGGNDDDDNE----NGPTDPDDGNGHGTHVAGIIA 55 (241)
T ss_pred CEEEEEeCCCCCCCcchhcccc---------------------CcccccccccCc----CCCCCCCCCCCcHHHHHHHHh
Confidence 6899999999999998711100 000001111100 000234568899999999999
Q ss_pred cccCccccccccCCcccccccccccEEEeeeecCCC-CCHHHHHHHHHHHH-HCCCcEEEecCCCCCCCCCccchHHHHH
Q 044513 120 GNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDG-CDDADILAAFDDAI-ADGVDIISLSLGSSNPHEYFNDSIAIGT 197 (457)
Q Consensus 120 g~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~-~~~~~i~~ai~~a~-~~~~~Vin~S~G~~~~~~~~~~~~~~~~ 197 (457)
+...+... .|+||+++|+.+++..... .....+++++++++ +.+++|||||||..... ....+.+.+
T Consensus 56 ~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~ 124 (241)
T cd00306 56 ASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAI 124 (241)
T ss_pred cCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHH
Confidence 98644321 6899999999999988765 57788999999999 89999999999987332 456778888
Q ss_pred HHhhhC-CcEEEEecCCCCCCCC---ccCCCCCCceEEEeeecCceeeeeEEeCCCceeeceecccccCCCceeeeEecC
Q 044513 198 FHAMRN-GILTSASAGNDGPSRS---TITNVAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTYDLQNVTYPLIYGG 273 (457)
Q Consensus 198 ~~a~~~-gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (457)
+++.++ |+++|+|+||.+.... ..++..+++|+||+.+.+.
T Consensus 125 ~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------------------------- 169 (241)
T cd00306 125 DYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------------------------- 169 (241)
T ss_pred HHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------------------------
Confidence 888887 9999999999998876 5778899999999865441
Q ss_pred CCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCcceEeeccccHHHH
Q 044513 274 DAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPLPTSYVDTNDGSDI 353 (457)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (457)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCcEEEEeeeccccCCCCCccc-cccCCCCCCCCCCCCCCceeecCccEEee-ecCCCCCccCCcchhhHHHH
Q 044513 354 LLYINSTRNATATIYRSTEGNNTLAPIVG-SLSSRGPNPITPDILKPDISAPGIDILAA-WSPVNPVSEVKGTSMACPHV 431 (457)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~-~~~~~~~~~~sGTSmAaP~V 431 (457)
... .++++| .|||+.|||..+... ......+..++|||||||+|
T Consensus 170 --------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~~~~~~~~~~GTS~Aap~v 215 (241)
T cd00306 170 --------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTTGGGGYATLSGTSMAAPIV 215 (241)
T ss_pred --------------------------CccCCcCCCC--------CCceEEeCcCCccCcccCCCCCeEeeccHHHHHHHH
Confidence 111 334444 356999999999874 22234566779999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHhcC
Q 044513 432 TGAAAYIKSFHPTWSPAAIKSALMTT 457 (457)
Q Consensus 432 AG~aALl~~~~P~lt~~~i~~~L~~T 457 (457)
||++|||+|++|++++.++|++|+.|
T Consensus 216 aG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 216 AGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999999876
No 40
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-30 Score=263.26 Aligned_cols=214 Identities=28% Similarity=0.327 Sum_probs=164.8
Q ss_pred CCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCC-C--CCHHHHHHHHHHHHHCCCcEEEecCCCC
Q 044513 107 TDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSD-G--CDDADILAAFDDAIADGVDIISLSLGSS 183 (457)
Q Consensus 107 ~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~-~--~~~~~i~~ai~~a~~~~~~Vin~S~G~~ 183 (457)
...|||||||||+|+..+.... .|+||+|+|+++++.+.- + .+...+.+|+..++++++||||||||-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~~--------NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPEL--------NGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCccc--------cCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 3569999999999998776444 788999999999997652 2 3667899999999999999999999988
Q ss_pred CCCCCccchHHHHHHHhhhCCcEEEEecCCCCCCCCccCC---CCCCceEEEeeecCceeeeeEEeCCCceeeceecccc
Q 044513 184 NPHEYFNDSIAIGTFHAMRNGILTSASAGNDGPSRSTITN---VAPWFISVAASTIDRKFSTKVQLGNNNIYEGISINTY 260 (457)
Q Consensus 184 ~~~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~~---~~~~~i~Vga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (457)
...+.....++.+-....++|+++|+||||.|+...+.++ ....+|.|||.-......
T Consensus 381 a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~------------------- 441 (1304)
T KOG1114|consen 381 AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ------------------- 441 (1304)
T ss_pred CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH-------------------
Confidence 6666666666655544556999999999999988766664 345788888743221000
Q ss_pred cCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCCCCCCc
Q 044513 261 DLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRAFSFPL 340 (457)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 340 (457)
T Consensus 442 -------------------------------------------------------------------------------- 441 (1304)
T KOG1114|consen 442 -------------------------------------------------------------------------------- 441 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEeeecCC-CCCc
Q 044513 341 PTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV-NPVS 419 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~-~~~~ 419 (457)
...+.. .+....+..+|||||+. ||..-..|+|||+.|.+--... ....
T Consensus 442 -----------a~y~~~-----------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~tlq~~q 491 (1304)
T KOG1114|consen 442 -----------AEYSVR-----------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYTLQNSQ 491 (1304)
T ss_pred -----------hhhhhh-----------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhhhhhhh
Confidence 000000 02223478899999999 9999999999999998765444 2344
Q ss_pred cCCcchhhHHHHHHHHHHHHH----hCCCCCHHHHHHHHhcC
Q 044513 420 EVKGTSMACPHVTGAAAYIKS----FHPTWSPAAIKSALMTT 457 (457)
Q Consensus 420 ~~sGTSmAaP~VAG~aALl~~----~~P~lt~~~i~~~L~~T 457 (457)
-|+|||||+|.++|.+|||++ .+-.+||..||++|++|
T Consensus 492 LMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenT 533 (1304)
T KOG1114|consen 492 LMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENT 533 (1304)
T ss_pred hhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhc
Confidence 579999999999999999976 46799999999999987
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.5e-23 Score=217.68 Aligned_cols=245 Identities=29% Similarity=0.445 Sum_probs=182.2
Q ss_pred hcccC--CCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCC
Q 044513 29 QVERS--TTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRD 106 (457)
Q Consensus 29 ~~~~~--g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d 106 (457)
..|.. +++|+|++|+|||+||+..||+|.+.... ..+|.+.... ....+
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~------------------------~~~~~~~~~~-----~~~~d 181 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA------------------------GGDFVDGDPE-----PPFLD 181 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhccccc------------------------ccccccCCCC-----CCCCC
Confidence 46666 99999999999999999999999774321 1223222110 02467
Q ss_pred CCCCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCC-C-CCHHHHHHHHHHHHHCC--CcEEEecCCC
Q 044513 107 TDGHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSD-G-CDDADILAAFDDAIADG--VDIISLSLGS 182 (457)
Q Consensus 107 ~~gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~-~-~~~~~i~~ai~~a~~~~--~~Vin~S~G~ 182 (457)
..+|||||+|++++....+ .....|++|+++++.++++... + ....++++++.++.+.+ +++||||+|.
T Consensus 182 ~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~ 254 (508)
T COG1404 182 DNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGG 254 (508)
T ss_pred CCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCC
Confidence 8999999999999842111 1112889999999999998865 4 46677899999999998 9999999998
Q ss_pred CCCCCCccchHHHHHHHhhhCC-cEEEEecCCCCCCCC----ccCCCCC--CceEEEeeecCceeeeeEEeCCCceeece
Q 044513 183 SNPHEYFNDSIAIGTFHAMRNG-ILTSASAGNDGPSRS----TITNVAP--WFISVAASTIDRKFSTKVQLGNNNIYEGI 255 (457)
Q Consensus 183 ~~~~~~~~~~~~~~~~~a~~~g-i~vV~AAGN~g~~~~----~~~~~~~--~~i~Vga~~~~~~~~~~~~~~~~~~~~~~ 255 (457)
. ........+..++..++..+ +++|+|+||.+.... .++.... .+++|++...
T Consensus 255 ~-~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------------------- 314 (508)
T COG1404 255 S-LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------------------- 314 (508)
T ss_pred C-ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC-------------------
Confidence 6 33344566777777777766 999999999986642 2233222 5555554322
Q ss_pred ecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCCccccccCCceEEEEecCCCCCCC
Q 044513 256 SINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVSGEGPFSAGAVGALMQGQRRRDRA 335 (457)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 335 (457)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcceEeeccccHHHHHHHHHhCCCcEEEEeeeccccCCCCCccccccCCCCCCCCCCCCCCceeecCccEEe-----
Q 044513 336 FSFPLPTSYVDTNDGSDILLYINSTRNATATIYRSTEGNNTLAPIVGSLSSRGPNPITPDILKPDISAPGIDILA----- 410 (457)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s----- 410 (457)
......||++|+.. +.++++||.++.+
T Consensus 315 ------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~ 346 (508)
T COG1404 315 ------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVN 346 (508)
T ss_pred ------------------------------------------CCccccccccCCCC------CcceeCCCccccccccce
Confidence 12457888888751 2399999999987
Q ss_pred eecCCC-CCccCCcchhhHHHHHHHHHHHHHhCC-CCCHHHHHHHHhcC
Q 044513 411 AWSPVN-PVSEVKGTSMACPHVTGAAAYIKSFHP-TWSPAAIKSALMTT 457 (457)
Q Consensus 411 ~~~~~~-~~~~~sGTSmAaP~VAG~aALl~~~~P-~lt~~~i~~~L~~T 457 (457)
.+++.. .+..+.||||++|+|+|++||+++.+| .+++.+++..+..+
T Consensus 347 ~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~ 395 (508)
T COG1404 347 TLPGDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTT 395 (508)
T ss_pred eeeCCccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhc
Confidence 555542 477789999999999999999999999 89999999987653
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.2e-22 Score=186.44 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=113.5
Q ss_pred hcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCC
Q 044513 29 QVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTD 108 (457)
Q Consensus 29 ~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~ 108 (457)
.+|++|+||++|+++|+|+||||-||||+.+ .+-...++|.++ ++.|.+.....-.+
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n----------------------ynaeasydfssn-dpfpyprytddwfn 208 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNAEASYDFSSN-DPFPYPRYTDDWFN 208 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCceeecccccC-CCCCCCcccchhhh
Confidence 6999999999999999999999999999642 233345556544 22222222222278
Q ss_pred CCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHH-CCCcEEEecCCCCCCCC
Q 044513 109 GHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIA-DGVDIISLSLGSSNPHE 187 (457)
Q Consensus 109 gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~-~~~~Vin~S~G~~~~~~ 187 (457)
.|||.|||-+++..+++... .|||.+.++..+|+++. ..-.++++|-..-.+ ....|.+.|||......
T Consensus 209 shgtrcagev~aardngicg--------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNGICG--------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred ccCccccceeeeeccCCcee--------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 99999999999988887655 58899999999999773 244455544332222 24689999999864433
Q ss_pred CccchH---HHHHHHhhh-----CCcEEEEecCCCCCCCC---ccCCCCCCceEEEe
Q 044513 188 YFNDSI---AIGTFHAMR-----NGILTSASAGNDGPSRS---TITNVAPWFISVAA 233 (457)
Q Consensus 188 ~~~~~~---~~~~~~a~~-----~gi~vV~AAGN~g~~~~---~~~~~~~~~i~Vga 233 (457)
..+.+- -+++.+-++ .|-++|.|.|..|.... ..-+.+.|.|++-+
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisins 335 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINS 335 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeeh
Confidence 333222 223322222 67799999999885432 22245566666643
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.77 E-value=4.5e-18 Score=168.84 Aligned_cols=98 Identities=22% Similarity=0.298 Sum_probs=78.7
Q ss_pred ccccccccEEEeeeecCCCCCHHHHHHHHHHHHHC---CCcEEEecCCCCCCCC--CccchHHHHHHHhhhCCcEEEEec
Q 044513 137 RGCVPSARIAVYKICWSDGCDDADILAAFDDAIAD---GVDIISLSLGSSNPHE--YFNDSIAIGTFHAMRNGILTSASA 211 (457)
Q Consensus 137 ~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~---~~~Vin~S~G~~~~~~--~~~~~~~~~~~~a~~~gi~vV~AA 211 (457)
.|+||+|+|+.+++.++. ...++.++.+++.. +++|||+|||...... .....+++++.++..+|+.||+|+
T Consensus 84 ~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~GitvvaAs 160 (361)
T cd04056 84 GAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVLAAS 160 (361)
T ss_pred HhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEEEeC
Confidence 899999999999996643 34567788888876 8999999999873321 123677778888889999999999
Q ss_pred CCCCCCCC-----------ccCCCCCCceEEEeeecC
Q 044513 212 GNDGPSRS-----------TITNVAPWFISVAASTID 237 (457)
Q Consensus 212 GN~g~~~~-----------~~~~~~~~~i~Vga~~~~ 237 (457)
||+|.... .+++.++++++||+++..
T Consensus 161 Gd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~ 197 (361)
T cd04056 161 GDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLY 197 (361)
T ss_pred CCCCCCCCCCCCCCCcccCCCCCCCCceeeeeccccc
Confidence 99996543 467899999999997665
No 44
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.2e-08 Score=107.12 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred ccccccccEEEeeeecCCCCCHHHHHHHHHHHHHCCC-cEEEecCCCCC--CCCC--ccchHHHHHHHhhhCCcEEEEec
Q 044513 137 RGCVPSARIAVYKICWSDGCDDADILAAFDDAIADGV-DIISLSLGSSN--PHEY--FNDSIAIGTFHAMRNGILTSASA 211 (457)
Q Consensus 137 ~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~-~Vin~S~G~~~--~~~~--~~~~~~~~~~~a~~~gi~vV~AA 211 (457)
+-+||+|+|..+-... .....+..|+++...+-. -++-.||+... .... .-+.+.....++..+|+.+++|+
T Consensus 289 ~A~AP~A~I~lvvap~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~AAS 365 (1174)
T COG4934 289 HAMAPKANIDLVVAPN---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFAAS 365 (1174)
T ss_pred hccCccCceEEEEcCC---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEEec
Confidence 5679999999887722 122223333333333222 44445666531 2222 33555666667888999999999
Q ss_pred CCCCCCCC--------ccCCCCCCceEEEe
Q 044513 212 GNDGPSRS--------TITNVAPWFISVAA 233 (457)
Q Consensus 212 GN~g~~~~--------~~~~~~~~~i~Vga 233 (457)
|..|.... .+++.+|++.+||.
T Consensus 366 GD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 366 GDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccccccCCCcccceeecccCCCccEEeecC
Confidence 99986553 45578999999997
No 45
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.9e-08 Score=98.87 Aligned_cols=156 Identities=14% Similarity=0.121 Sum_probs=100.2
Q ss_pred hcccCCCCCCCeEEEEeecccCCCCCCCCCCCCCCCCCccccccccCCccccccceeEEEeccCCCCCCCCCCCCCCCCC
Q 044513 29 QVERSTTEESDIVIGVFDTGIWPESESFNGTGFGPPPTKWRGSCQVSANFTCNNKIVGARYYKSDGEFGPDDLPSPRDTD 108 (457)
Q Consensus 29 ~~~~~g~~G~gv~V~ViDtGid~~Hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~ 108 (457)
..|..+++|+++.|+|.|+|++..||++...- ......++.... ..+..-.......
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~~----------------------~~~~s~d~~~~~-~~p~~~~~~~~~~ 80 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNNY----------------------DPLGSYDVNRHD-NDPEPRCDGTNEN 80 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCccccccc----------------------CcceeEeeecCC-CCcccccCCCCcc
Confidence 79999999999999999999999999996522 223333333321 1121112222357
Q ss_pred CCcchhhhhcccccCccccccccCCcccccccccccEEEeeeecCCCCCHHHHHHHHHHHHH-CCCcEEEecCCCCCCCC
Q 044513 109 GHGSHTASTAAGNLVSMASLYGFSSGTARGCVPSARIAVYKICWSDGCDDADILAAFDDAIA-DGVDIISLSLGSSNPHE 187 (457)
Q Consensus 109 gHGThVAGi~ag~~~~~~~~~g~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~-~~~~Vin~S~G~~~~~~ 187 (457)
.|||-||+=.+...++..-. .|+++++++..++++...-. +...+...... .-.++-+.|||-.....
T Consensus 81 ~~g~~Ca~~~a~~~~~~~C~--------vg~~~~~~~~g~~~l~~~v~---~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 81 KHGTRCAGCVAARANNLTCG--------VGVAYNATIGGIRMLAGCVS---DAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred ccCCCCCcccccccCCCcCC--------CCcccCccccceeeeeeecc---cceecccccCCCCCceeecCcCCcccCCC
Confidence 89999999999887554443 68899999999999764322 12222222222 34699999999753321
Q ss_pred Cc---cchHHHHHHHh-----hhCCcEEEEecCCCCCCC
Q 044513 188 YF---NDSIAIGTFHA-----MRNGILTSASAGNDGPSR 218 (457)
Q Consensus 188 ~~---~~~~~~~~~~a-----~~~gi~vV~AAGN~g~~~ 218 (457)
.. ......+...+ ..+|-++|+|.||-+...
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 11 22333333332 248889999999987543
No 46
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=98.23 E-value=8e-06 Score=68.49 Aligned_cols=115 Identities=40% Similarity=0.599 Sum_probs=84.7
Q ss_pred EEeCCCceeeceecccccCCCceeeeEecCCCCCCCCCcCCCCCccCCcCcccccccCCcEEEEecCCC------ccccc
Q 044513 244 VQLGNNNIYEGISINTYDLQNVTYPLIYGGDAANISGGFTDSSSRFCHQDSLDQNLVKGKIVVCDDLVS------GEGPF 317 (457)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~------~~~~~ 317 (457)
+.+++++.+.|.++.+... ..+++++..... .......|........+++|||+||.++.. ...+.
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~------~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS------GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC------CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 5678888899988886544 456776633211 234457898888878899999999987553 34567
Q ss_pred cCCceEEEEecCCCCCCCC---CCCcceEeeccccHHHHHHHHHhCCCcEEE
Q 044513 318 SAGAVGALMQGQRRRDRAF---SFPLPTSYVDTNDGSDILLYINSTRNATAT 366 (457)
Q Consensus 318 ~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (457)
..|+.+++++++....... ...+|.+.+...++..++.++.+..+++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 8999999998866543222 357999999999999999999987665443
No 47
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=98.18 E-value=6.6e-06 Score=70.66 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=69.7
Q ss_pred CCcCcccccccCCcEEEEecCC-----CccccccCCceEEEEecCCCCCCCC----CCCcceEeeccccHHHHHHHHHhC
Q 044513 290 CHQDSLDQNLVKGKIVVCDDLV-----SGEGPFSAGAVGALMQGQRRRDRAF----SFPLPTSYVDTNDGSDILLYINST 360 (457)
Q Consensus 290 ~~~~~~~~~~~~g~i~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 360 (457)
|....+...+++|||+||.++. |..++...|+.+++++++....... ...+|...++..++..++.++.+
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 3334455568999999998653 5667789999999999877543221 24689999999999999999988
Q ss_pred CCcEEEEeeeccccCCCCCccccccCCCCC
Q 044513 361 RNATATIYRSTEGNNTLAPIVGSLSSRGPN 390 (457)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~Ss~Gp~ 390 (457)
..++.+. .... .......+.||||||.
T Consensus 115 -~~~i~~~-~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 115 -SKKLTFN-TKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred -CCeEEEE-eccc-cccCCccccccCcCCC
Confidence 3333332 2222 3455668999999996
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.54 E-value=0.00021 Score=59.50 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=63.8
Q ss_pred CccCCcCcccccccCCcEEEEecCC-----CccccccCCceEEEEecCCCCCC------C--CCCCcceEeeccccHHHH
Q 044513 287 SRFCHQDSLDQNLVKGKIVVCDDLV-----SGEGPFSAGAVGALMQGQRRRDR------A--FSFPLPTSYVDTNDGSDI 353 (457)
Q Consensus 287 ~~~~~~~~~~~~~~~g~i~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~ 353 (457)
.++|....+...+++|||+||.++. |..++.++|+.+++++++..... . ....+|...++..++..+
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 4789888777788999999988764 77789999999999998766311 1 234589999999999999
Q ss_pred HHHHHhCCCcEEE
Q 044513 354 LLYINSTRNATAT 366 (457)
Q Consensus 354 ~~~~~~~~~~~~~ 366 (457)
+.++....+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999887655543
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.04 E-value=0.00086 Score=55.12 Aligned_cols=74 Identities=23% Similarity=0.224 Sum_probs=59.5
Q ss_pred CccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCC-------CCCCCcceEeeccccHHHHH
Q 044513 287 SRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDR-------AFSFPLPTSYVDTNDGSDIL 354 (457)
Q Consensus 287 ~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 354 (457)
..+|....+...+++|+|+|+.|+ .|..++...|+.+++|+++..... .....+|+.+++..++..+.
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 357998888778899999996654 588999999999999999876311 13456799999999999998
Q ss_pred HHHHhC
Q 044513 355 LYINST 360 (457)
Q Consensus 355 ~~~~~~ 360 (457)
+.+..+
T Consensus 110 ~~l~~~ 115 (120)
T cd02129 110 QTFGDS 115 (120)
T ss_pred HHhccC
Confidence 877643
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=97.03 E-value=0.001 Score=56.48 Aligned_cols=81 Identities=10% Similarity=-0.011 Sum_probs=64.2
Q ss_pred CCccCCcCcc--cccccCCcEEEEecC-----CCccccccCCceEEEEecCCCC-C--C----CCCCCcceEeeccccHH
Q 044513 286 SSRFCHQDSL--DQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRR-D--R----AFSFPLPTSYVDTNDGS 351 (457)
Q Consensus 286 ~~~~~~~~~~--~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~-~--~----~~~~~~~~~~~~~~~~~ 351 (457)
..++|...+. ...++.++|+|+.|+ .|..++..+|+.++++|++... . . .....+|..+++..++.
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 3578998877 567899999996665 5888999999999999998862 1 1 12346889999999999
Q ss_pred HHHHHHHhCCCcEEE
Q 044513 352 DILLYINSTRNATAT 366 (457)
Q Consensus 352 ~~~~~~~~~~~~~~~ 366 (457)
.++..+....+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999887665554
No 51
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=96.98 E-value=0.00053 Score=54.79 Aligned_cols=71 Identities=24% Similarity=0.401 Sum_probs=54.6
Q ss_pred CccCCcCcccccccCCcEEEEecCC-----CccccccCCceEEEEecCC-------CCCCCCCCCcceEeeccccHHHHH
Q 044513 287 SRFCHQDSLDQNLVKGKIVVCDDLV-----SGEGPFSAGAVGALMQGQR-------RRDRAFSFPLPTSYVDTNDGSDIL 354 (457)
Q Consensus 287 ~~~~~~~~~~~~~~~g~i~~~~~~~-----~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 354 (457)
...|........+++|+|+||.++. |..++...|+.++++++.. ........++|+..++..++..|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 3457777788899999999998764 6778899999999999911 122335678999999999999998
Q ss_pred HHH
Q 044513 355 LYI 357 (457)
Q Consensus 355 ~~~ 357 (457)
+++
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 764
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=96.98 E-value=0.0018 Score=53.59 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=60.9
Q ss_pred CCccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCCC-------CCCCcceEeeccccHHHH
Q 044513 286 SSRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDRA-------FSFPLPTSYVDTNDGSDI 353 (457)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 353 (457)
..+.|...... .+++|||+||.++ .|..++...|+.+++++++...... ....+|+..++..++..+
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l 104 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDAL 104 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHH
Confidence 34679887763 4599999999874 3566788999999999987764222 224689999999999999
Q ss_pred HHHHHhCCCcEEE
Q 044513 354 LLYINSTRNATAT 366 (457)
Q Consensus 354 ~~~~~~~~~~~~~ 366 (457)
+.++......+++
T Consensus 105 ~~~l~~g~~v~v~ 117 (118)
T cd04818 105 KAALAAGGTVTVT 117 (118)
T ss_pred HHHHhcCCcEEEe
Confidence 9999877655543
No 53
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=96.84 E-value=0.0037 Score=51.96 Aligned_cols=78 Identities=17% Similarity=0.169 Sum_probs=59.4
Q ss_pred ccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCC-CCC------CCCCCcceEeeccccHHHHHH
Q 044513 288 RFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRR-RDR------AFSFPLPTSYVDTNDGSDILL 355 (457)
Q Consensus 288 ~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~ 355 (457)
.+|....+ +.+++|||+|+.++ .|..++..+|+.++++|++.. ... .....+|+..++..++..|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 45775444 24799999997764 578889999999999998773 211 123468999999999999999
Q ss_pred HHHhCCCcEEE
Q 044513 356 YINSTRNATAT 366 (457)
Q Consensus 356 ~~~~~~~~~~~ 366 (457)
.+.+..+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99888766554
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=96.80 E-value=0.0026 Score=53.21 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=61.3
Q ss_pred CccCCcCcccc-c-----ccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCC--------------CCCCCcc
Q 044513 287 SRFCHQDSLDQ-N-----LVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDR--------------AFSFPLP 341 (457)
Q Consensus 287 ~~~~~~~~~~~-~-----~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~--------------~~~~~~~ 341 (457)
.++|+..+... . ...++|+|+.|+ .|..++..+|+.+++++++..... ....++|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 45788766532 1 367889997766 688999999999999999865421 1234689
Q ss_pred eEeeccccHHHHHHHHHhCCCcEEE
Q 044513 342 TSYVDTNDGSDILLYINSTRNATAT 366 (457)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (457)
+.+++..++..++..+.......++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988766554
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=96.76 E-value=0.0032 Score=52.43 Aligned_cols=81 Identities=20% Similarity=0.208 Sum_probs=62.5
Q ss_pred CCCccCCcCc--ccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCC----CC-----CCCCcceEeeccc
Q 044513 285 SSSRFCHQDS--LDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRD----RA-----FSFPLPTSYVDTN 348 (457)
Q Consensus 285 ~~~~~~~~~~--~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~ 348 (457)
.....|.... +...+++|||+||.++ .|..++...|+.+++++++.... .. ....+|+..++..
T Consensus 28 ~~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 28 GPLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred cceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 4456788877 6678899999999775 35677889999999999877532 11 2357899999999
Q ss_pred cHHHHHHHHHhCCCcEE
Q 044513 349 DGSDILLYINSTRNATA 365 (457)
Q Consensus 349 ~~~~~~~~~~~~~~~~~ 365 (457)
++..++.++....+.++
T Consensus 108 ~g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 108 DGEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHHhcCCceEE
Confidence 99999999987654443
No 56
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.73 E-value=0.0024 Score=52.62 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=61.3
Q ss_pred CccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCC-C----------CCCCCcceEeeccccH
Q 044513 287 SRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRD-R----------AFSFPLPTSYVDTNDG 350 (457)
Q Consensus 287 ~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~ 350 (457)
.++|.... ...+++++|+|+.|+ .|..++..+|+.++++|++.... . ....++|+..++..++
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 356789999996654 58889999999999999876431 1 1235789999999999
Q ss_pred HHHHHHHHhCCCcEEEE
Q 044513 351 SDILLYINSTRNATATI 367 (457)
Q Consensus 351 ~~~~~~~~~~~~~~~~~ 367 (457)
..++..+.....+.+.+
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999988877665443
No 57
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.66 E-value=0.0024 Score=54.44 Aligned_cols=76 Identities=11% Similarity=0.224 Sum_probs=59.5
Q ss_pred CccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCCC---------CCCCcceEeeccccHHH
Q 044513 287 SRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDRA---------FSFPLPTSYVDTNDGSD 352 (457)
Q Consensus 287 ~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 352 (457)
.++|...+ .+++|+|+|+.|+ .|..++.++|+.++++|++...... ....+|+..++..++..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46788765 3789999997765 5888999999999999987653211 13578999999999999
Q ss_pred HHHHHHhCCCcEE
Q 044513 353 ILLYINSTRNATA 365 (457)
Q Consensus 353 ~~~~~~~~~~~~~ 365 (457)
++..+......++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
No 58
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=96.49 E-value=0.0034 Score=52.47 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=58.9
Q ss_pred CccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCC---------------CCCCCcceEeec
Q 044513 287 SRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDR---------------AFSFPLPTSYVD 346 (457)
Q Consensus 287 ~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 346 (457)
.++|..... ...++++|+|+.|+ .|..++..+|+.+++++++..... .....+|++.++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986554 55689999996664 578899999999999997665320 124578999999
Q ss_pred cccHHHHHHHHHhCCCcE
Q 044513 347 TNDGSDILLYINSTRNAT 364 (457)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~ 364 (457)
..++..|+..+......+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999988765444
No 59
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=96.44 E-value=0.0047 Score=51.81 Aligned_cols=80 Identities=15% Similarity=0.125 Sum_probs=58.2
Q ss_pred CCCccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCC----CCCCCcceEeeccccHHHHHH
Q 044513 285 SSSRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDR----AFSFPLPTSYVDTNDGSDILL 355 (457)
Q Consensus 285 ~~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 355 (457)
...++|.+.+.+..+++++|+|+.|+ .|..++.++|+.++++|++..... .....++...+ ..++..++.
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 34578998776666899999997765 578889999999999998775422 12223444444 899999998
Q ss_pred HHHhCCCcEE
Q 044513 356 YINSTRNATA 365 (457)
Q Consensus 356 ~~~~~~~~~~ 365 (457)
.+......++
T Consensus 118 ~l~~G~~vtv 127 (129)
T cd02124 118 ALAAGSNVTV 127 (129)
T ss_pred HHhcCCeEEE
Confidence 8877655443
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=96.16 E-value=0.0055 Score=50.41 Aligned_cols=73 Identities=8% Similarity=0.092 Sum_probs=56.1
Q ss_pred CCccCCcCcccccccCCcEEEEecC-----CCccccccCCceEEEEecCCCCC-----C----CCCCCcceEeeccccHH
Q 044513 286 SSRFCHQDSLDQNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRD-----R----AFSFPLPTSYVDTNDGS 351 (457)
Q Consensus 286 ~~~~~~~~~~~~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~ 351 (457)
..++|... +..+++++|+|+.|+ .|..++..+|+.+++++++.... . ....++|+..++..++.
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35789765 557899999996654 68889999999999999866532 1 23347899999999999
Q ss_pred HHHHHHHhC
Q 044513 352 DILLYINST 360 (457)
Q Consensus 352 ~~~~~~~~~ 360 (457)
.+..++.+.
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 888776553
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.65 E-value=0.012 Score=49.93 Aligned_cols=66 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred ccccccCCcEEEEecC----------CCccccccCCceEEEEecCC--CCCC-----C--CCCCcceEeeccccHHHHHH
Q 044513 295 LDQNLVKGKIVVCDDL----------VSGEGPFSAGAVGALMQGQR--RRDR-----A--FSFPLPTSYVDTNDGSDILL 355 (457)
Q Consensus 295 ~~~~~~~g~i~~~~~~----------~~~~~~~~~g~~~~~~~~~~--~~~~-----~--~~~~~~~~~~~~~~~~~~~~ 355 (457)
+...+++|||+|+.|+ +|.+++.++|+.+++|||+. .... . ...++|++.++..++..|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 3445789999996664 45678899999999999987 4321 1 14589999999999999988
Q ss_pred HHHhC
Q 044513 356 YINST 360 (457)
Q Consensus 356 ~~~~~ 360 (457)
.+.+.
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 77543
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=95.48 E-value=0.11 Score=43.50 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=51.0
Q ss_pred cccccCCcEEEEecCC-------CccccccCCceEEEEecCCCCCCC----------CCCCcceEeeccccHHHHHHHHH
Q 044513 296 DQNLVKGKIVVCDDLV-------SGEGPFSAGAVGALMQGQRRRDRA----------FSFPLPTSYVDTNDGSDILLYIN 358 (457)
Q Consensus 296 ~~~~~~g~i~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 358 (457)
...+++|||+|+.++. +..++...|+.++++++....... ....+|++.++..++..|...+.
T Consensus 39 ~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~ 118 (127)
T cd04819 39 DGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAE 118 (127)
T ss_pred CCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHh
Confidence 3567999999988754 466788999999999986654321 12469999999999999999887
Q ss_pred hC
Q 044513 359 ST 360 (457)
Q Consensus 359 ~~ 360 (457)
..
T Consensus 119 ~g 120 (127)
T cd04819 119 RN 120 (127)
T ss_pred cC
Confidence 64
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=95.35 E-value=0.017 Score=50.07 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=60.2
Q ss_pred CccCCcCcccc---cccCCcEEEEecC-----CCccccccCCceEEEEecCCCCCCC---------CCCCcceEeecccc
Q 044513 287 SRFCHQDSLDQ---NLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRRDRA---------FSFPLPTSYVDTND 349 (457)
Q Consensus 287 ~~~~~~~~~~~---~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 349 (457)
.++|......+ ....++|+|+.|+ .|..++..+|+.+++++++...... ....+|++.++..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798766644 7889999996665 6888999999999999997654211 14579999999999
Q ss_pred HHHHHHHHHhCCC
Q 044513 350 GSDILLYINSTRN 362 (457)
Q Consensus 350 ~~~~~~~~~~~~~ 362 (457)
+..+...+.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999998887654
No 64
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=90.92 E-value=0.76 Score=38.77 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=49.9
Q ss_pred ccccCCcEEEEecC-----------CC-------ccccccCCceEEEEecCCCC------CC-----CCCCCcceEeecc
Q 044513 297 QNLVKGKIVVCDDL-----------VS-------GEGPFSAGAVGALMQGQRRR------DR-----AFSFPLPTSYVDT 347 (457)
Q Consensus 297 ~~~~~g~i~~~~~~-----------~~-------~~~~~~~g~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~ 347 (457)
..+++|||+|+.+. .+ ...+.+.|+.++++++.... .. .....+|++.++.
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ 114 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISV 114 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEech
Confidence 45799999996443 33 46677999999999985422 11 1224589999999
Q ss_pred ccHHHHHHHHHhCCCcE
Q 044513 348 NDGSDILLYINSTRNAT 364 (457)
Q Consensus 348 ~~~~~~~~~~~~~~~~~ 364 (457)
.++..|...++......
T Consensus 115 ed~~~L~r~l~~g~~v~ 131 (134)
T cd04815 115 EDADMLERLAARGKPIR 131 (134)
T ss_pred hcHHHHHHHHhCCCCeE
Confidence 99999999888765443
No 65
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=87.62 E-value=0.4 Score=51.83 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=22.6
Q ss_pred CCCCCCCeEEEEeecccCCCCCCCC
Q 044513 33 STTEESDIVIGVFDTGIWPESESFN 57 (457)
Q Consensus 33 ~g~~G~gv~V~ViDtGid~~Hp~f~ 57 (457)
.-|+|+||+|||+|||||+.-|-+.
T Consensus 76 PeYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 76 PEYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred cCCCCCceEEEEeecCCCCCCCCce
Confidence 4699999999999999999988774
No 66
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=83.99 E-value=1.1 Score=38.44 Aligned_cols=48 Identities=19% Similarity=0.099 Sum_probs=36.1
Q ss_pred ccCCcCcccccccCCcEEEEecCC-----------------------CccccccCCceEEEEecCCCCCCC
Q 044513 288 RFCHQDSLDQNLVKGKIVVCDDLV-----------------------SGEGPFSAGAVGALMQGQRRRDRA 335 (457)
Q Consensus 288 ~~~~~~~~~~~~~~g~i~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~~~~~ 335 (457)
..|....+...+++|||+|+.++. |...+...|+.+++++++......
T Consensus 34 ~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~~~ 104 (151)
T cd04822 34 PELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSHSG 104 (151)
T ss_pred cccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcccCc
Confidence 346666667789999999986652 455667999999999997765543
No 67
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=81.78 E-value=1.2 Score=37.72 Aligned_cols=43 Identities=28% Similarity=0.161 Sum_probs=34.1
Q ss_pred ccCCcCcccccccCCcEEEEecCC-----------------CccccccCCceEEEEecCC
Q 044513 288 RFCHQDSLDQNLVKGKIVVCDDLV-----------------SGEGPFSAGAVGALMQGQR 330 (457)
Q Consensus 288 ~~~~~~~~~~~~~~g~i~~~~~~~-----------------~~~~~~~~g~~~~~~~~~~ 330 (457)
..|....+...+++|||+|+.++. |.+.+...|+.+++++++.
T Consensus 36 ~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 36 PELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred cCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 356666677889999999988654 4567789999999999864
No 68
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=76.39 E-value=2 Score=36.56 Aligned_cols=43 Identities=28% Similarity=0.149 Sum_probs=33.9
Q ss_pred cCCcCcccccccCCcEEEEecCC-----------------------CccccccCCceEEEEecCCC
Q 044513 289 FCHQDSLDQNLVKGKIVVCDDLV-----------------------SGEGPFSAGAVGALMQGQRR 331 (457)
Q Consensus 289 ~~~~~~~~~~~~~g~i~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~~ 331 (457)
.|....+...+++|||+|+.++. |.+.+...|+.++|++++..
T Consensus 35 ~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 35 ELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 57777788889999999976542 44566789999999998765
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=75.70 E-value=7.2 Score=39.49 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=57.4
Q ss_pred ccccCCcEEE-----EecCCCccccccCCceEEEEecCCCCC---------CCCCCCcceEeeccccHHHHHHHHHhCCC
Q 044513 297 QNLVKGKIVV-----CDDLVSGEGPFSAGAVGALMQGQRRRD---------RAFSFPLPTSYVDTNDGSDILLYINSTRN 362 (457)
Q Consensus 297 ~~~~~g~i~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (457)
...+++++++ |.+.+|...+.++||.++++.|+.... ...+..||+.+++.+++..+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 3457788888 556679999999999999999984322 23567899999999999999987777777
Q ss_pred cEEEEeee
Q 044513 363 ATATIYRS 370 (457)
Q Consensus 363 ~~~~~~~~ 370 (457)
.++..+..
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 77666533
No 70
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=70.47 E-value=2.4 Score=37.65 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=28.5
Q ss_pred ccccCCcEEEEecC-----CCccccccCCceEEEEecCC
Q 044513 297 QNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQR 330 (457)
Q Consensus 297 ~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~ 330 (457)
..+++|||+|+.++ .|..++...|+.++++|++.
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp 89 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP 89 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence 45899999997764 57788899999999999863
No 71
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=68.07 E-value=2.4 Score=36.22 Aligned_cols=36 Identities=19% Similarity=-0.045 Sum_probs=30.1
Q ss_pred cccCCcEEEEec-----CCCccccccCCceEEEEecCCCCC
Q 044513 298 NLVKGKIVVCDD-----LVSGEGPFSAGAVGALMQGQRRRD 333 (457)
Q Consensus 298 ~~~~g~i~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~ 333 (457)
.+++|||+++.. +.|++++...|+.+++||.+-...
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~ 77 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDL 77 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhc
Confidence 679999999764 568889999999999999875443
No 72
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=62.10 E-value=7.5 Score=25.26 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=17.8
Q ss_pred HHHHHHhCCCCCHHHHHHHHhc
Q 044513 435 AAYIKSFHPTWSPAAIKSALMT 456 (457)
Q Consensus 435 aALl~~~~P~lt~~~i~~~L~~ 456 (457)
+--|++.||+++...|+..|..
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~ 26 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQA 26 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHH
Confidence 4568899999999999999954
No 73
>PRK15019 CsdA-binding activator; Provisional
Probab=58.83 E-value=10 Score=32.49 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=26.0
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHH
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKS 452 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~ 452 (457)
.|.| =|++|-|++|||++.+-..+|+||.+
T Consensus 80 ~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 80 FGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444 47999999999999999999999976
No 74
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=58.66 E-value=10 Score=32.11 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=26.4
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSA 453 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~ 453 (457)
.|.| =|++|-|++|||++.+-+.+|+||.+.
T Consensus 75 ~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 75 YGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3445 489999999999999999999999754
No 75
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=55.30 E-value=12 Score=31.58 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.1
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHH
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKS 452 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~ 452 (457)
.|.| =|++|-|++||+.+.+-..||+||.+
T Consensus 70 ~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 70 QGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445 58999999999999999999999875
No 76
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=55.12 E-value=18 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHHh
Q 044513 434 AAAYIKSFHPTWSPAAIKSALM 455 (457)
Q Consensus 434 ~aALl~~~~P~lt~~~i~~~L~ 455 (457)
.+..|++.||+++...|+..|.
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~ 26 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLE 26 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHH
Confidence 4667899999999999999987
No 77
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=54.85 E-value=9.5 Score=35.05 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=29.5
Q ss_pred ccccCCcEEEEecC-----CCccccccCCceEEEEecCCCC
Q 044513 297 QNLVKGKIVVCDDL-----VSGEGPFSAGAVGALMQGQRRR 332 (457)
Q Consensus 297 ~~~~~g~i~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~ 332 (457)
..+++|||+|+.++ .|..++...||.++++|++...
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 56899999998764 4677888999999999986543
No 78
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.86 E-value=13 Score=31.56 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHH
Q 044513 428 CPHVTGAAAYIKSFHPTWSPAAIKS 452 (457)
Q Consensus 428 aP~VAG~aALl~~~~P~lt~~~i~~ 452 (457)
|++|.|++|++++.+-..|++||.+
T Consensus 80 A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 80 ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 6899999999999999999999864
No 79
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=52.82 E-value=14 Score=22.65 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHH
Q 044513 426 MACPHVTGAAAYI 438 (457)
Q Consensus 426 mAaP~VAG~aALl 438 (457)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998855
No 80
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=51.18 E-value=16 Score=30.36 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=24.9
Q ss_pred CcchhhHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 044513 422 KGTSMACPHVTGAAAYIKSFHPTWSPAAIKSA 453 (457)
Q Consensus 422 sGTSmAaP~VAG~aALl~~~~P~lt~~~i~~~ 453 (457)
.|.|= |++|-|++||+++.+-+.+|+||.+.
T Consensus 61 ~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 61 RADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 34444 67999999999999999999999764
No 81
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=49.49 E-value=15 Score=25.58 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=21.2
Q ss_pred CcchhhHHHHHHHHH------HHHHhCCCCCHHHHHHHHh
Q 044513 422 KGTSMACPHVTGAAA------YIKSFHPTWSPAAIKSALM 455 (457)
Q Consensus 422 sGTSmAaP~VAG~aA------Ll~~~~P~lt~~~i~~~L~ 455 (457)
.||-+..=.|....+ -+.+.||+|+.++|+++|.
T Consensus 15 ~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 15 RGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp TTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 566665555544432 4566799999999999884
No 82
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=41.82 E-value=35 Score=18.62 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=14.6
Q ss_pred chhhHHHHHHHHHHHHHh
Q 044513 424 TSMACPHVTGAAAYIKSF 441 (457)
Q Consensus 424 TSmAaP~VAG~aALl~~~ 441 (457)
+...+|++.|++-.+.++
T Consensus 2 ~~iIaPi~VGvvl~l~~~ 19 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLFDH 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHh
Confidence 356899999999888764
No 83
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=33.70 E-value=2.5e+02 Score=22.53 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=43.1
Q ss_pred ccccEEEeeeecCCCCCHHHHHHHHHHHHHCCCcEEEecCCCCCCCCC-ccchHHHHHHHhhhC-CcEEEE
Q 044513 141 PSARIAVYKICWSDGCDDADILAAFDDAIADGVDIISLSLGSSNPHEY-FNDSIAIGTFHAMRN-GILTSA 209 (457)
Q Consensus 141 P~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~-~~~~~~~~~~~a~~~-gi~vV~ 209 (457)
++++|+. ++.+++.....+..-++++.+.++++|-+|--....... ...-++.......++ |+.||.
T Consensus 36 ~~~elvg--f~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVG--FFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKFGIEVVE 104 (107)
T ss_pred CCeEEEE--EeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHhCCCEee
Confidence 4566655 556677778888888899999999999999776432211 222233333344444 887774
No 84
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=32.89 E-value=59 Score=32.44 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=42.2
Q ss_pred CccccccCCCCCCCCCCCCCCceeecCccEEeeecCC--CCCc-cCCcchhhHHHHHHHHHHH
Q 044513 379 PIVGSLSSRGPNPITPDILKPDISAPGIDILAAWSPV--NPVS-EVKGTSMACPHVTGAAAYI 438 (457)
Q Consensus 379 ~~~~~~Ss~Gp~~~~~~~~KPdi~APG~~i~s~~~~~--~~~~-~~sGTSmAaP~VAG~aALl 438 (457)
+........||.. -..||+.+||+...|+.+++ ++.. ..+=|=.|+|.+|.++|+.
T Consensus 355 G~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~GRqG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 355 GFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEGRQGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred CcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCccCCCCCCeEEecCHHHHHHHHhh
Confidence 4455667778876 24579999999999999886 3333 3356889999999999975
No 85
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=28.74 E-value=1.8e+02 Score=28.21 Aligned_cols=75 Identities=19% Similarity=0.253 Sum_probs=50.3
Q ss_pred cccccEEEeeeecCCCCCHHHHHHHHHHHHHCC----CcEEEecCCCCCC---CCCccchHHHHHHHhhhCCcEEEEecC
Q 044513 140 VPSARIAVYKICWSDGCDDADILAAFDDAIADG----VDIISLSLGSSNP---HEYFNDSIAIGTFHAMRNGILTSASAG 212 (457)
Q Consensus 140 AP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~----~~Vin~S~G~~~~---~~~~~~~~~~~~~~a~~~gi~vV~AAG 212 (457)
.|.++++.+.+.--+......|++||..+.+.+ +|||-+-=|+..- ..+.+..+.+++ .+-.++||.+.|
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~varai---~~~~~PvisaIG 115 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARAI---AASPIPVISAIG 115 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHHH---HhCCCCEEEecC
Confidence 455666655553334457788999999998765 8999999998632 222234444333 356799999999
Q ss_pred CCCCC
Q 044513 213 NDGPS 217 (457)
Q Consensus 213 N~g~~ 217 (457)
=+-+.
T Consensus 116 He~D~ 120 (319)
T PF02601_consen 116 HETDF 120 (319)
T ss_pred CCCCc
Confidence 87543
No 86
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=28.62 E-value=52 Score=28.50 Aligned_cols=37 Identities=32% Similarity=0.195 Sum_probs=27.4
Q ss_pred cccccccCCcEEEEecCC------------------------CccccccCCceEEEEecCC
Q 044513 294 SLDQNLVKGKIVVCDDLV------------------------SGEGPFSAGAVGALMQGQR 330 (457)
Q Consensus 294 ~~~~~~~~g~i~~~~~~~------------------------~~~~~~~~g~~~~~~~~~~ 330 (457)
.+...+++|||+++..+. |.+.+...|+.++++..+.
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 456788999999977432 4456678899999988653
No 87
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.47 E-value=1.1e+02 Score=30.13 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=50.4
Q ss_pred ccCCcCcc---cccccCCcEEE-----EecCCCccccccCCceEEEEecCCCCC-------CCCCCCcceEeeccccHHH
Q 044513 288 RFCHQDSL---DQNLVKGKIVV-----CDDLVSGEGPFSAGAVGALMQGQRRRD-------RAFSFPLPTSYVDTNDGSD 352 (457)
Q Consensus 288 ~~~~~~~~---~~~~~~g~i~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 352 (457)
++|++... ........++| |.+..|+.+++.+|.+++++||+.... .+....++...+....+..
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665332 23444556666 455568899999999999999976554 3455667888888888887
Q ss_pred HHHHHHhC
Q 044513 353 ILLYINST 360 (457)
Q Consensus 353 ~~~~~~~~ 360 (457)
+.+++...
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 77754443
No 88
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=23.83 E-value=38 Score=13.75 Aligned_cols=6 Identities=33% Similarity=0.623 Sum_probs=3.2
Q ss_pred cccCCC
Q 044513 383 SLSSRG 388 (457)
Q Consensus 383 ~~Ss~G 388 (457)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 355655
No 89
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=22.40 E-value=83 Score=23.78 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=24.0
Q ss_pred CcchhhHHHHHHHHH------HHHHhCCCCCHHHHHHHHh
Q 044513 422 KGTSMACPHVTGAAA------YIKSFHPTWSPAAIKSALM 455 (457)
Q Consensus 422 sGTSmAaP~VAG~aA------Ll~~~~P~lt~~~i~~~L~ 455 (457)
.||=+.-=.+.+..+ =++..||.|+.+||++.|.
T Consensus 27 ~GtRI~V~~Il~~l~~G~s~eeil~dyp~Lt~~dI~aal~ 66 (79)
T COG2442 27 RGTRIPVWDILEMLAAGESIEEILADYPDLTLEDIRAALR 66 (79)
T ss_pred eCceecHHHHHHHHHCCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 566655555544444 3566899999999999885
No 90
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.85 E-value=2.2e+02 Score=29.05 Aligned_cols=75 Identities=19% Similarity=0.304 Sum_probs=55.6
Q ss_pred cccccEEEeeeecCCCCCHHHHHHHHHHHHHCC-CcEEEecCCCCCC---CCCccchHHHHHHHhhhCCcEEEEecCCCC
Q 044513 140 VPSARIAVYKICWSDGCDDADILAAFDDAIADG-VDIISLSLGSSNP---HEYFNDSIAIGTFHAMRNGILTSASAGNDG 215 (457)
Q Consensus 140 AP~A~l~~~kv~~~~~~~~~~i~~ai~~a~~~~-~~Vin~S~G~~~~---~~~~~~~~~~~~~~a~~~gi~vV~AAGN~g 215 (457)
.|.++++.+.+.=-+..-...|++||+.+-+.+ +|||=+.=|+.+- +.+.++.+.+++ ....+++|.|.|-+-
T Consensus 160 ~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi---~~s~iPvISAVGHEt 236 (440)
T COG1570 160 FPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAI---AASRIPVISAVGHET 236 (440)
T ss_pred CCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHH---HhCCCCeEeecccCC
Confidence 677888888775555567788999999998887 8999999887522 344455555444 367899999999876
Q ss_pred CC
Q 044513 216 PS 217 (457)
Q Consensus 216 ~~ 217 (457)
+.
T Consensus 237 D~ 238 (440)
T COG1570 237 DF 238 (440)
T ss_pred Cc
Confidence 44
No 91
>PF07305 DUF1454: Protein of unknown function (DUF1454); InterPro: IPR009918 This family consists of several Enterobacterial sequences of around 200 residues in length, which are often known as YiiQ proteins. The function of this family is unknown.
Probab=21.41 E-value=90 Score=27.68 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHh
Q 044513 431 VTGAAAYIKSFHPTWSPAAIKSALM 455 (457)
Q Consensus 431 VAG~aALl~~~~P~lt~~~i~~~L~ 455 (457)
+.=++|||++..|.||.+|..+.|.
T Consensus 125 ~~YmaAl~r~F~Ptls~eQs~~kl~ 149 (200)
T PF07305_consen 125 IEYMAALMRQFEPTLSPEQSQEKLQ 149 (200)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 3457899999999999999876553
No 92
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=20.84 E-value=2.4e+02 Score=27.51 Aligned_cols=76 Identities=17% Similarity=0.238 Sum_probs=47.4
Q ss_pred cccccccccEEEeeeecCCC-------CCH----------HHHHHHHHHHHHCCCcEEEecCCCCCC-----------CC
Q 044513 136 ARGCVPSARIAVYKICWSDG-------CDD----------ADILAAFDDAIADGVDIISLSLGSSNP-----------HE 187 (457)
Q Consensus 136 ~~GvAP~A~l~~~kv~~~~~-------~~~----------~~i~~ai~~a~~~~~~Vin~S~G~~~~-----------~~ 187 (457)
+.-+||-++|-+...+.... +++ +.-..-+++|+++|.+||+ |.|...- ..
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 46778888876655543211 111 1224557789999999997 4453211 24
Q ss_pred CccchHHHHHHHh-h----hCCcEEEEecC
Q 044513 188 YFNDSIAIGTFHA-M----RNGILTSASAG 212 (457)
Q Consensus 188 ~~~~~~~~~~~~a-~----~~gi~vV~AAG 212 (457)
...|++++.+++- + ..||.+|+|+=
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~E 245 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLE 245 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecC
Confidence 4568998888753 3 36888999854
No 93
>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]. Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.
Probab=20.09 E-value=1e+02 Score=25.55 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q 044513 425 SMACPHVTGAAAYIKSFHPTWSPAAIKSALMT 456 (457)
Q Consensus 425 SmAaP~VAG~aALl~~~~P~lt~~~i~~~L~~ 456 (457)
=.++|.|.-.+.-++..+|.+..-|||+.|..
T Consensus 74 rv~tp~v~~~I~~~k~enP~ifawEiR~~L~~ 105 (125)
T PF00292_consen 74 RVATPEVVEKIEQYKRENPTIFAWEIRDRLIA 105 (125)
T ss_dssp SSS-HCHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence 36889888888889999999999999998864
Done!