BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044515
(167 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
++C+VCLE F+ + ++ C H FH C++ WL CP C PVL
Sbjct: 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
C VC E + + + +L C+H FH C++PWL H CP CR
Sbjct: 18 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 120 CSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
C+VCL +D ++ L C H FH +CV WL +H CP CR V+V
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT 162
+S + +C VC+ F+ +Q + L C+H+FH CV WL A+ CP CR
Sbjct: 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C++CL ++ + + +L C H FH CV WL + CP CR +
Sbjct: 17 CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +CLE + L C H F C+ W+ +P CP C+ PV
Sbjct: 8 CPICLEDPSNYSM--ALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C E F + L+C+H F C+ W+ CP CR +
Sbjct: 56 CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
C +C + +L C H FH CV WL CP CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C E F + L+C+H F C+ W+ CP CR +
Sbjct: 56 CIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C E F + L+C+H F C+ W+ CP CR +
Sbjct: 67 CIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
C +C++G D L C+H F C+ W H +CP CR
Sbjct: 18 CCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICR 55
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 104 SRWPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHP 155
S W + + C CR I +C+E ++ +A C+H FH C+ WL
Sbjct: 25 SAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 84
Query: 156 HCP 158
CP
Sbjct: 85 VCP 87
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 30.8 bits (68), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 106 WPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
W + + C CR I +C+E ++ +A C+H FH C+ WL C
Sbjct: 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 103
Query: 158 P 158
P
Sbjct: 104 P 104
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 106 WPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
W + + C CR I +C+E ++ +A C+H FH C+ WL C
Sbjct: 35 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 94
Query: 158 P 158
P
Sbjct: 95 P 95
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 106 WPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
W + + C CR I +C+E ++ +A C+H FH C+ WL C
Sbjct: 33 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 92
Query: 158 P 158
P
Sbjct: 93 P 93
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 30.4 bits (67), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 99 SKLFGSRWPLKLRRCRSCRKI--CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPH 156
L SRWP L ++ + C +C E F I + CSH + C+ +L+
Sbjct: 2 DSLAESRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQ--CSHNYCSLCIRKFLSYKTQ 59
Query: 157 CPYC 160
CP C
Sbjct: 60 CPTC 63
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 106 WPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
W + + C CR I +C+E ++ +A C+H FH C+ WL C
Sbjct: 33 WDIVVDNCAICRNHIXDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 92
Query: 158 P 158
P
Sbjct: 93 P 93
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 106 WPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
W + + C CR I +C+E ++ +A C+H FH C+ WL C
Sbjct: 25 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 84
Query: 158 P 158
P
Sbjct: 85 P 85
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 106 WPLKLRRCRSCR-KICSVCL----EGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYC 160
W ++ C CR ++ CL E Q+ + C+H FH C+ W+ + CP C
Sbjct: 11 WDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLC 70
Query: 161 RTPVLV 166
+ +V
Sbjct: 71 QQDWVV 76
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 106 WPLKLRRCRSCRK-ICSVCLE-------GFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
W + + C CR I +C+E ++ +A C+H FH C+ WL C
Sbjct: 17 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC 76
Query: 158 P 158
P
Sbjct: 77 P 77
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWL-AAHPHCPYCR 161
+C +CL+ K + C H+F DC++ L + + CP CR
Sbjct: 55 MCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCR 96
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP----HCPYC 160
IC VC G +D + + C +H+ C+LP L P CP C
Sbjct: 18 ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWL-AAHPHCPYCR 161
+C +CL+ K + C H+F DC++ L + + CP CR
Sbjct: 36 MCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCR 77
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWL-AAHPHCPYCR 161
+C +CL+ K + C H+F DC++ L + + CP CR
Sbjct: 56 MCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCR 97
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 120 CSVCLEGF----QDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C++G+ Q+ + I C H F C+ L CP CR +
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 120 CSVCLEGF----QDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
C +C++G+ Q+ + I C H F C+ L CP CR
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCR 58
>pdb|1YW6|A Chain A, Crystal Structure Of Succinylglutamate Desuccinylase From
Escherichia Coli, Northeast Structural Genomics Target
Et72.
pdb|1YW6|B Chain B, Crystal Structure Of Succinylglutamate Desuccinylase From
Escherichia Coli, Northeast Structural Genomics Target
Et72
Length = 335
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 88 LKAGMK-CTCLGSKLFGSRWPLKLRRCRSCR-KICSVCLEGFQDKQQIAKLSCSHKFHLD 145
LK G + C ++ FG RW L +CR + CLE F D+ + S ++HLD
Sbjct: 96 LKQGKRYCHSDXNRXFGGRWQLFAESGETCRARELEQCLEDFYDQGK-----ESVRWHLD 150
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
+C +C F D I + C H F C++ +L +CP C V
Sbjct: 13 MCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQV 56
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 3 GLFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDR----RQPLVTRISDLDANALRA 58
G PGL +VN R +K CRK SL + ++ +T+ + V ++ A+RA
Sbjct: 56 GHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMRA 115
Query: 59 RKRL 62
R L
Sbjct: 116 RNGL 119
>pdb|1HHL|A Chain A, The Three-Dimensional Structure Of Pheasant And
Guinea-Fowl Egg Lysozymes
Length = 129
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 3/115 (2%)
Query: 55 ALRARKRLEQKLGY-LQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRC 113
A R L+ GY L + + N S + T G SRW R
Sbjct: 10 AAMKRHGLDNYRGYSLGNWVCAAKFESNFNSQATNRNTDGSTDYGVLQINSRWWCNDGRT 69
Query: 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKF--HLDCVLPWLAAHPHCPYCRTPVLV 166
R +C++ Q A +C+ K D + W+A HC V +
Sbjct: 70 PGSRNLCNIPCSALQSSDITATANCAKKIVSDGDGMNAWVAWRKHCKGTDVRVWI 124
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
+C +C F D I + C H F C++ +L +CP C V
Sbjct: 17 MCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 120 CSVCLEGF----QDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C++G+ Q+ + I C H F C+ L CP CR +
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 120 CSVCLEGF----QDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C++G+ Q+ + I C H F C+ L CP CR +
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 26.9 bits (58), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 120 CSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAHPHCPYCRTP 163
C +CLE + +A L C H H C L CP C P
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGP 52
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
+C +C F D I + C H F C++ +L +CP C V
Sbjct: 17 MCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQV 60
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 120 CSVCLEGF----QDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
C +C++G+ Q+ + I C H F C+ L CP CR +
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4F0A|B Chain B, Crystal Structure Of Xwnt8 In Complex With The
Cysteine-Rich Domain Of Frizzled 8
Length = 316
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 86 RNLKAGMKCT----CLGSKLFGSRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHK 141
+N+ G++ T CL S S+W RSC+++C+ C ++K+ SC+ K
Sbjct: 240 KNISLGLQGTEGRECLQSGKNLSQWER-----RSCKRLCTDCGLRVEEKKTEIISSCNCK 294
Query: 142 FHLDCVLPWLAAHPHCPYCRTPVL 165
FH C + C C+ V+
Sbjct: 295 FHWCCTVK-------CEQCKQVVI 311
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|B Chain B, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
pdb|2OB2|C Chain C, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd)
Length = 327
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 66 LGYLQPYSRSGVLPQ-NMRSGRNLKAGMKCTCLGSKLFGSRW 106
+G QP R G + Q N++ RNL+ T + + SRW
Sbjct: 233 IGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRW 274
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJD|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJE|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|B Chain B, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJF|C Chain C, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
pdb|1RJG|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase
Involved In The Regulation Of Protein Phosphatase 2a
Activity
Length = 334
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 66 LGYLQPYSRSGVLPQ-NMRSGRNLKAGMKCTCLGSKLFGSRW 106
+G QP R G + Q N++ RNL+ T + + SRW
Sbjct: 234 IGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRW 275
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 120 CSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAHPH---CPYC 160
C +C+E F ++Q K L C H C+ LA+ + CP+C
Sbjct: 18 CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans
pdb|2OB1|B Chain B, Ppm1 With 1,8-Ans
pdb|2OB1|C Chain C, Ppm1 With 1,8-Ans
Length = 319
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 66 LGYLQPYSRSGVLPQ-NMRSGRNLKAGMKCTCLGSKLFGSRW 106
+G QP R G + Q N++ RNL+ T + + SRW
Sbjct: 225 IGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRW 266
>pdb|1FBI|X Chain X, Crystal Structure Of A Cross-Reaction Complex Between Fab
F9.13.7 And Guinea-Fowl Lysozyme
pdb|1FBI|Y Chain Y, Crystal Structure Of A Cross-Reaction Complex Between Fab
F9.13.7 And Guinea-Fowl Lysozyme
Length = 129
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 3/115 (2%)
Query: 55 ALRARKRLEQKLGY-LQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRC 113
A R L+ GY L + + N S + T G SRW R
Sbjct: 10 AAMKRHGLDNYRGYSLGNWVCAAKFESNFNSQATNRNTDGSTDYGVLQINSRWWCNDGRT 69
Query: 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLD--CVLPWLAAHPHCPYCRTPVLV 166
R +C++ Q A +C+ K D + W+A HC V +
Sbjct: 70 PGSRNLCNIPCSALQSSDITATANCAKKIVSDGNGMNAWVAWRKHCKGTDVRVWI 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,811,925
Number of Sequences: 62578
Number of extensions: 166991
Number of successful extensions: 431
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 57
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)