Query 044515
Match_columns 167
No_of_seqs 227 out of 1306
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 06:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.6 4.2E-16 1.4E-20 103.9 3.6 55 113-167 19-73 (75)
2 2l0b_A E3 ubiquitin-protein li 99.6 1.3E-15 4.4E-20 105.5 4.9 71 96-166 16-89 (91)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.8E-15 6.3E-20 94.7 3.2 50 116-165 4-54 (55)
4 2ep4_A Ring finger protein 24; 99.5 3.9E-15 1.3E-19 98.7 4.6 52 114-165 12-63 (74)
5 2kiz_A E3 ubiquitin-protein li 99.5 5.2E-15 1.8E-19 96.8 4.9 52 114-165 11-62 (69)
6 2ect_A Ring finger protein 126 99.5 9.4E-15 3.2E-19 97.7 4.1 53 114-166 12-64 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.6E-14 5.4E-19 98.1 4.6 51 115-165 13-75 (81)
8 2ecm_A Ring finger and CHY zin 99.5 4E-14 1.4E-18 88.4 3.8 50 116-165 4-54 (55)
9 3ng2_A RNF4, snurf, ring finge 99.4 4.5E-14 1.5E-18 92.5 3.6 52 115-166 8-63 (71)
10 2ea6_A Ring finger protein 4; 99.4 7.8E-14 2.7E-18 90.6 4.4 53 114-166 12-68 (69)
11 2xeu_A Ring finger protein 4; 99.4 1.2E-13 4.3E-18 88.4 3.5 51 116-166 2-56 (64)
12 3dpl_R Ring-box protein 1; ubi 99.4 1.6E-13 5.6E-18 98.0 4.4 52 114-165 34-100 (106)
13 1v87_A Deltex protein 2; ring- 99.4 1.9E-13 6.4E-18 97.6 4.6 50 116-165 24-93 (114)
14 2d8t_A Dactylidin, ring finger 99.4 1.2E-13 4.1E-18 91.0 3.3 48 115-165 13-60 (71)
15 2djb_A Polycomb group ring fin 99.4 3E-13 1E-17 89.3 5.2 50 113-165 11-61 (72)
16 2csy_A Zinc finger protein 183 99.4 4.6E-13 1.6E-17 90.2 4.1 49 114-165 12-60 (81)
17 1chc_A Equine herpes virus-1 r 99.4 3.2E-13 1.1E-17 87.9 3.1 48 116-165 4-51 (68)
18 4ayc_A E3 ubiquitin-protein li 99.3 2.2E-13 7.5E-18 100.9 2.6 47 116-165 52-98 (138)
19 2ct2_A Tripartite motif protei 99.3 1.2E-12 4.3E-17 88.8 5.6 53 113-165 11-67 (88)
20 2ecy_A TNF receptor-associated 99.3 8E-13 2.7E-17 85.7 4.3 50 114-166 12-62 (66)
21 2yur_A Retinoblastoma-binding 99.3 9.5E-13 3.2E-17 87.5 4.7 49 114-165 12-63 (74)
22 2ysl_A Tripartite motif-contai 99.3 8E-13 2.7E-17 87.0 4.1 51 113-166 16-69 (73)
23 2ecn_A Ring finger protein 141 99.3 3.5E-13 1.2E-17 88.2 1.8 48 114-165 12-59 (70)
24 2d8s_A Cellular modulator of i 99.3 1E-12 3.5E-17 89.3 3.5 52 113-165 11-69 (80)
25 1t1h_A Gspef-atpub14, armadill 99.3 1.3E-12 4.5E-17 87.2 3.9 48 115-165 6-54 (78)
26 4a0k_B E3 ubiquitin-protein li 99.3 2.9E-13 9.9E-18 98.3 -0.1 53 113-165 44-111 (117)
27 3lrq_A E3 ubiquitin-protein li 99.3 1E-12 3.6E-17 92.2 2.8 50 113-165 18-69 (100)
28 2ecw_A Tripartite motif-contai 99.3 2.6E-12 8.8E-17 86.3 4.6 49 114-165 16-70 (85)
29 2ysj_A Tripartite motif-contai 99.3 3.4E-12 1.2E-16 81.9 4.4 45 113-160 16-63 (63)
30 2egp_A Tripartite motif-contai 99.3 8.8E-13 3E-17 87.9 0.9 49 114-165 9-64 (79)
31 2ckl_A Polycomb group ring fin 99.2 3.5E-12 1.2E-16 90.4 4.1 49 114-165 12-61 (108)
32 3ztg_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 87.1 4.3 48 114-164 10-60 (92)
33 2y43_A E3 ubiquitin-protein li 99.2 2.5E-12 8.5E-17 89.7 3.1 48 115-165 20-68 (99)
34 2ecv_A Tripartite motif-contai 99.2 4.2E-12 1.5E-16 85.3 3.8 49 114-165 16-70 (85)
35 3fl2_A E3 ubiquitin-protein li 99.2 3.3E-12 1.1E-16 92.6 3.3 49 115-166 50-99 (124)
36 4ap4_A E3 ubiquitin ligase RNF 99.2 3.9E-12 1.3E-16 92.0 3.7 52 115-166 5-60 (133)
37 2ecj_A Tripartite motif-contai 99.2 5.6E-12 1.9E-16 79.2 3.0 44 114-160 12-58 (58)
38 1g25_A CDK-activating kinase a 99.2 1.7E-11 5.7E-16 79.2 4.0 50 117-166 3-55 (65)
39 2ckl_B Ubiquitin ligase protei 99.2 1.1E-11 3.8E-16 94.0 3.1 48 115-165 52-101 (165)
40 1jm7_A BRCA1, breast cancer ty 99.2 1E-11 3.6E-16 87.9 2.5 47 116-165 20-69 (112)
41 3hct_A TNF receptor-associated 99.1 1.8E-11 6E-16 88.2 3.6 50 113-165 14-64 (118)
42 3l11_A E3 ubiquitin-protein li 99.1 5.1E-12 1.8E-16 90.4 0.7 49 114-165 12-61 (115)
43 1z6u_A NP95-like ring finger p 99.1 1.7E-11 5.8E-16 92.2 3.4 49 115-166 76-125 (150)
44 2ct0_A Non-SMC element 1 homol 99.1 2.5E-11 8.6E-16 81.3 3.0 48 116-165 14-63 (74)
45 1rmd_A RAG1; V(D)J recombinati 99.1 3E-11 1E-15 86.4 2.9 48 115-165 21-69 (116)
46 2kr4_A Ubiquitin conjugation f 99.1 5.7E-11 1.9E-15 81.2 3.8 48 115-165 12-59 (85)
47 4ap4_A E3 ubiquitin ligase RNF 99.1 4E-11 1.4E-15 86.6 3.1 52 114-165 69-124 (133)
48 2kre_A Ubiquitin conjugation f 99.1 6.8E-11 2.3E-15 83.3 3.3 48 115-165 27-74 (100)
49 1wgm_A Ubiquitin conjugation f 99.0 1.9E-10 6.5E-15 80.7 4.8 48 115-165 20-68 (98)
50 2vje_A E3 ubiquitin-protein li 99.0 9.9E-11 3.4E-15 75.9 2.9 47 116-165 7-56 (64)
51 3knv_A TNF receptor-associated 99.0 7.5E-11 2.6E-15 87.9 2.3 49 113-164 27-76 (141)
52 1e4u_A Transcriptional repress 99.0 1.3E-10 4.5E-15 78.4 3.3 52 114-166 8-62 (78)
53 2vje_B MDM4 protein; proto-onc 99.0 1.7E-10 5.8E-15 74.5 2.8 47 116-165 6-55 (63)
54 1bor_A Transcription factor PM 99.0 5.3E-11 1.8E-15 75.0 0.2 45 115-165 4-48 (56)
55 2y1n_A E3 ubiquitin-protein li 99.0 3E-10 1E-14 97.3 4.0 47 116-165 331-378 (389)
56 1jm7_B BARD1, BRCA1-associated 99.0 7E-11 2.4E-15 84.9 0.1 46 115-165 20-66 (117)
57 4ic3_A E3 ubiquitin-protein li 98.9 1.6E-10 5.6E-15 76.7 1.2 44 115-165 22-66 (74)
58 3hcs_A TNF receptor-associated 98.9 5.8E-10 2E-14 84.7 3.4 50 113-165 14-64 (170)
59 2c2l_A CHIP, carboxy terminus 98.9 8.8E-10 3E-14 88.6 3.3 48 115-165 206-254 (281)
60 2yu4_A E3 SUMO-protein ligase 98.9 1E-09 3.5E-14 76.2 3.0 45 116-163 6-59 (94)
61 3k1l_B Fancl; UBC, ring, RWD, 98.8 5.7E-10 2E-14 94.1 -0.1 52 115-166 306-373 (381)
62 2ecg_A Baculoviral IAP repeat- 98.7 1.9E-09 6.5E-14 71.6 1.1 44 115-165 23-67 (75)
63 2ea5_A Cell growth regulator w 98.7 6.9E-09 2.4E-13 68.0 3.3 46 113-165 11-57 (68)
64 2f42_A STIP1 homology and U-bo 98.7 6.9E-09 2.4E-13 80.3 3.7 48 115-165 104-152 (179)
65 1vyx_A ORF K3, K3RING; zinc-bi 98.7 1.2E-08 4E-13 65.5 3.4 50 114-166 3-59 (60)
66 1wim_A KIAA0161 protein; ring 98.7 7.8E-09 2.7E-13 71.3 2.2 47 117-163 5-61 (94)
67 2yho_A E3 ubiquitin-protein li 98.6 4.3E-09 1.5E-13 70.9 0.5 43 116-165 17-60 (79)
68 3htk_C E3 SUMO-protein ligase 98.5 4.1E-08 1.4E-12 80.0 2.4 48 115-165 179-231 (267)
69 3t6p_A Baculoviral IAP repeat- 98.5 1.8E-08 6.3E-13 85.1 0.2 44 115-165 293-337 (345)
70 2bay_A PRE-mRNA splicing facto 98.4 9.8E-08 3.4E-12 61.2 2.0 45 118-165 4-49 (61)
71 3vk6_A E3 ubiquitin-protein li 98.1 2.5E-06 8.4E-11 59.8 3.6 45 119-165 3-48 (101)
72 3nw0_A Non-structural maintena 97.9 6.9E-06 2.4E-10 65.9 3.6 47 116-165 179-228 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.014 4.8E-07 39.8 2.7 35 116-150 2-36 (101)
74 2lri_C Autoimmune regulator; Z 94.3 0.03 1E-06 36.0 2.8 46 116-165 11-61 (66)
75 1wil_A KIAA1045 protein; ring 92.9 0.085 2.9E-06 35.6 3.3 33 114-150 12-47 (89)
76 2ko5_A Ring finger protein Z; 92.9 0.045 1.6E-06 37.7 1.9 46 116-166 27-73 (99)
77 2l5u_A Chromodomain-helicase-D 90.3 0.14 4.7E-06 32.1 1.9 46 114-163 8-58 (61)
78 2k16_A Transcription initiatio 88.0 0.14 4.7E-06 33.2 0.8 49 115-164 16-69 (75)
79 1we9_A PHD finger family prote 87.1 0.088 3E-06 33.1 -0.6 49 115-163 4-58 (64)
80 1mm2_A MI2-beta; PHD, zinc fin 86.5 0.09 3.1E-06 33.0 -0.8 48 114-165 6-58 (61)
81 1f62_A Transcription factor WS 86.1 0.27 9.1E-06 29.3 1.2 43 119-162 2-49 (51)
82 2cs3_A Protein C14ORF4, MY039 84.7 0.36 1.2E-05 32.3 1.4 37 116-153 14-52 (93)
83 1z2q_A LM5-1; membrane protein 83.5 0.75 2.5E-05 30.4 2.7 38 113-150 17-55 (84)
84 2yw8_A RUN and FYVE domain-con 83.3 0.52 1.8E-05 31.1 1.8 37 113-149 15-52 (82)
85 3m62_A Ubiquitin conjugation f 82.3 0.93 3.2E-05 42.8 3.7 47 116-165 890-937 (968)
86 1joc_A EEA1, early endosomal a 81.7 0.81 2.8E-05 32.6 2.4 37 113-149 65-102 (125)
87 3t7l_A Zinc finger FYVE domain 81.1 0.96 3.3E-05 30.3 2.5 38 113-150 16-54 (90)
88 1x4u_A Zinc finger, FYVE domai 80.9 0.91 3.1E-05 30.0 2.3 37 113-149 10-47 (84)
89 2ysm_A Myeloid/lymphoid or mix 79.3 0.38 1.3E-05 33.3 -0.0 37 115-152 5-42 (111)
90 1fp0_A KAP-1 corepressor; PHD 78.8 0.52 1.8E-05 31.9 0.5 47 113-163 21-72 (88)
91 1wep_A PHF8; structural genomi 78.3 1.5 5.3E-05 28.4 2.8 48 116-164 11-64 (79)
92 3v43_A Histone acetyltransfera 78.2 0.44 1.5E-05 33.3 0.0 45 118-162 62-111 (112)
93 2yql_A PHD finger protein 21A; 76.9 0.16 5.5E-06 31.1 -2.3 45 114-162 6-55 (56)
94 1xwh_A Autoimmune regulator; P 76.6 0.2 6.8E-06 31.8 -2.0 45 115-163 6-55 (66)
95 2e6r_A Jumonji/ARID domain-con 75.0 0.21 7.1E-06 33.9 -2.3 47 115-162 14-65 (92)
96 1z60_A TFIIH basal transcripti 74.5 0.89 3E-05 28.4 0.7 42 118-160 16-58 (59)
97 2vpb_A Hpygo1, pygopus homolog 74.4 2.2 7.6E-05 26.9 2.6 34 115-148 6-41 (65)
98 2yt5_A Metal-response element- 73.2 1.4 4.6E-05 27.5 1.4 50 115-164 4-62 (66)
99 2lbm_A Transcriptional regulat 73.1 3.6 0.00012 30.1 3.8 46 114-163 60-117 (142)
100 1y02_A CARP2, FYVE-ring finger 72.5 0.26 8.9E-06 35.2 -2.4 47 114-160 16-63 (120)
101 2ku3_A Bromodomain-containing 72.1 3.5 0.00012 26.4 3.2 49 114-162 13-65 (71)
102 2puy_A PHD finger protein 21A; 72.1 0.34 1.2E-05 30.0 -1.7 44 116-163 4-52 (60)
103 3v43_A Histone acetyltransfera 69.7 6.4 0.00022 27.1 4.4 32 117-148 5-42 (112)
104 2ri7_A Nucleosome-remodeling f 69.5 1 3.6E-05 33.4 0.2 47 115-162 6-58 (174)
105 1wfk_A Zinc finger, FYVE domai 68.8 2.3 7.9E-05 28.4 1.8 34 116-149 8-42 (88)
106 2l43_A N-teminal domain from h 68.3 3.2 0.00011 27.7 2.4 50 114-163 22-75 (88)
107 1vfy_A Phosphatidylinositol-3- 67.3 2.6 8.9E-05 26.9 1.8 32 118-149 12-44 (73)
108 4gne_A Histone-lysine N-methyl 67.0 2.4 8.1E-05 29.5 1.6 43 113-161 11-60 (107)
109 2lv9_A Histone-lysine N-methyl 66.4 1.1 3.7E-05 30.6 -0.2 43 118-162 29-75 (98)
110 1weo_A Cellulose synthase, cat 65.3 8.1 0.00028 26.1 3.9 50 116-165 15-69 (93)
111 1dvp_A HRS, hepatocyte growth 64.4 2.3 7.9E-05 32.8 1.3 33 117-149 161-194 (220)
112 2kgg_A Histone demethylase jar 64.0 5.4 0.00019 23.6 2.7 43 119-161 4-52 (52)
113 3mpx_A FYVE, rhogef and PH dom 63.0 1.5 5.2E-05 36.7 0.0 51 114-164 372-430 (434)
114 3zyq_A Hepatocyte growth facto 61.3 2.9 0.0001 32.5 1.4 34 117-150 164-198 (226)
115 1wem_A Death associated transc 59.4 2.5 8.7E-05 27.1 0.6 48 117-166 16-73 (76)
116 1wee_A PHD finger family prote 58.3 0.75 2.6E-05 29.4 -2.2 50 116-166 15-69 (72)
117 3shb_A E3 ubiquitin-protein li 57.1 1.1 3.7E-05 29.4 -1.6 43 119-162 28-76 (77)
118 2kwj_A Zinc finger protein DPF 56.9 5.5 0.00019 27.6 2.1 33 118-150 2-41 (114)
119 1zbd_B Rabphilin-3A; G protein 55.1 3.6 0.00012 29.7 0.9 33 116-148 54-88 (134)
120 2e6s_A E3 ubiquitin-protein li 54.6 1.7 5.8E-05 28.4 -0.9 43 119-162 28-76 (77)
121 3ql9_A Transcriptional regulat 52.9 11 0.00037 27.1 3.1 46 114-163 54-111 (129)
122 3asl_A E3 ubiquitin-protein li 52.3 1.9 6.5E-05 27.5 -1.0 43 119-162 20-68 (70)
123 3i2d_A E3 SUMO-protein ligase 52.1 10 0.00034 32.0 3.2 47 117-165 249-299 (371)
124 1wev_A Riken cDNA 1110020M19; 50.6 4.1 0.00014 27.1 0.5 47 116-162 15-71 (88)
125 4fo9_A E3 SUMO-protein ligase 50.0 12 0.00043 31.3 3.5 47 117-165 215-265 (360)
126 3ask_A E3 ubiquitin-protein li 47.9 2.8 9.4E-05 33.1 -0.8 43 119-162 176-224 (226)
127 1wen_A Inhibitor of growth fam 47.7 4.7 0.00016 25.7 0.4 44 115-163 14-65 (71)
128 2d8v_A Zinc finger FYVE domain 47.1 7.1 0.00024 24.9 1.2 33 114-150 5-38 (67)
129 1weu_A Inhibitor of growth fam 46.4 9.4 0.00032 25.7 1.8 45 115-164 34-86 (91)
130 2xb1_A Pygopus homolog 2, B-ce 45.7 8.5 0.00029 26.3 1.5 47 118-164 4-62 (105)
131 2jne_A Hypothetical protein YF 45.3 7.5 0.00026 26.7 1.2 40 118-165 33-72 (101)
132 3fyb_A Protein of unknown func 44.3 9.4 0.00032 26.3 1.5 11 142-152 42-52 (104)
133 2o35_A Hypothetical protein DU 44.2 9.5 0.00032 26.3 1.5 11 142-152 43-53 (105)
134 2zet_C Melanophilin; complex, 43.9 8.8 0.0003 28.2 1.4 32 116-147 67-100 (153)
135 3mjh_B Early endosome antigen 42.0 6 0.00021 21.8 0.2 14 117-130 5-18 (34)
136 1iml_A CRIP, cysteine rich int 36.4 12 0.00041 23.2 1.0 45 116-164 26-71 (76)
137 2dj7_A Actin-binding LIM prote 35.6 21 0.00073 22.6 2.2 38 117-164 15-52 (80)
138 2dar_A PDZ and LIM domain prot 35.6 32 0.0011 22.0 3.1 26 118-146 26-51 (90)
139 3c6w_A P28ING5, inhibitor of g 35.5 4.3 0.00015 24.9 -1.2 42 116-162 8-57 (59)
140 2vnf_A ING 4, P29ING4, inhibit 34.9 4.3 0.00015 25.0 -1.3 42 116-162 9-58 (60)
141 1x62_A C-terminal LIM domain p 34.7 27 0.00091 21.8 2.5 27 117-146 15-41 (79)
142 1zfo_A LAsp-1; LIM domain, zin 33.8 9.4 0.00032 20.1 0.1 28 118-147 4-31 (31)
143 2a20_A Regulating synaptic mem 32.9 17 0.00058 22.6 1.2 36 115-150 7-43 (62)
144 2d8z_A Four and A half LIM dom 31.8 26 0.0009 21.1 2.1 11 139-149 51-61 (70)
145 3kqi_A GRC5, PHD finger protei 31.3 9.6 0.00033 24.3 -0.1 44 120-163 12-61 (75)
146 3o70_A PHD finger protein 13; 31.1 4.4 0.00015 25.6 -1.8 45 116-162 18-66 (68)
147 1x63_A Skeletal muscle LIM-pro 31.1 40 0.0014 20.9 2.9 27 119-146 17-43 (82)
148 2cu8_A Cysteine-rich protein 2 29.0 26 0.0009 21.6 1.7 27 118-146 10-36 (76)
149 2d8x_A Protein pinch; LIM doma 29.0 17 0.00057 22.1 0.7 31 118-150 32-62 (70)
150 1x64_A Alpha-actinin-2 associa 28.9 32 0.0011 21.9 2.2 37 117-164 25-61 (89)
151 3a1b_A DNA (cytosine-5)-methyl 28.9 37 0.0013 25.1 2.7 35 114-152 76-113 (159)
152 2jrp_A Putative cytoplasmic pr 28.3 23 0.00078 23.3 1.3 10 119-128 4-13 (81)
153 1nyp_A Pinch protein; LIM doma 28.2 27 0.00092 20.8 1.6 25 119-146 7-31 (66)
154 3f6q_B LIM and senescent cell 27.4 20 0.0007 21.5 1.0 38 118-164 12-49 (72)
155 2gmg_A Hypothetical protein PF 26.4 11 0.00038 26.1 -0.5 24 136-164 71-94 (105)
156 3kv5_D JMJC domain-containing 26.3 12 0.0004 32.6 -0.5 46 117-163 37-88 (488)
157 2co8_A NEDD9 interacting prote 26.3 38 0.0013 21.3 2.2 29 116-146 14-42 (82)
158 2g6q_A Inhibitor of growth pro 25.8 8.3 0.00028 23.9 -1.1 44 116-162 10-59 (62)
159 1m3v_A FLIN4, fusion of the LI 25.5 47 0.0016 22.6 2.7 48 117-165 32-80 (122)
160 2xjy_A Rhombotin-2; oncoprotei 25.4 42 0.0014 22.9 2.4 47 118-164 30-76 (131)
161 1wyh_A SLIM 2, skeletal muscle 25.3 44 0.0015 20.1 2.3 9 120-128 8-16 (72)
162 1wig_A KIAA1808 protein; LIM d 24.8 31 0.0011 21.2 1.5 32 117-149 31-62 (73)
163 2jmo_A Parkin; IBR, E3 ligase, 24.6 5.1 0.00017 26.0 -2.5 20 137-158 55-74 (80)
164 1x4k_A Skeletal muscle LIM-pro 24.2 47 0.0016 19.9 2.3 9 120-128 8-16 (72)
165 1g47_A Pinch protein; LIM doma 24.1 55 0.0019 19.9 2.6 28 118-146 12-39 (77)
166 1x68_A FHL5 protein; four-and- 23.1 37 0.0012 20.9 1.6 27 119-146 7-35 (76)
167 2pv0_B DNA (cytosine-5)-methyl 22.4 52 0.0018 27.8 2.8 33 115-151 91-126 (386)
168 1x4l_A Skeletal muscle LIM-pro 21.7 40 0.0014 20.4 1.5 10 119-128 7-16 (72)
169 2cur_A Skeletal muscle LIM-pro 21.1 35 0.0012 20.5 1.1 31 118-150 32-62 (69)
170 1wew_A DNA-binding family prot 20.9 83 0.0028 19.8 3.0 46 116-163 15-72 (78)
171 2lq6_A Bromodomain-containing 20.8 26 0.00089 23.1 0.5 31 118-150 18-51 (87)
172 2cor_A Pinch protein; LIM doma 20.5 42 0.0014 21.0 1.4 10 119-128 17-26 (79)
173 2l3k_A Rhombotin-2, linker, LI 20.2 33 0.0011 23.4 1.0 36 116-152 35-70 (123)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.2e-16 Score=103.87 Aligned_cols=55 Identities=38% Similarity=0.841 Sum_probs=49.3
Q ss_pred ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccCC
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~s 167 (167)
...++..|+||++.|..++.+..++|+|.||..||..|+..+.+||+||..+.++
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3446778999999999888888899999999999999999999999999998764
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=105.53 Aligned_cols=71 Identities=21% Similarity=0.452 Sum_probs=56.0
Q ss_pred ccccchhcCcCccccc---cccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 96 CLGSKLFGSRWPLKLR---RCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 96 g~~~~~~~s~~~~~~~---~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
+++++.+.+.+..... ....++..|+||++.|..++.+..++|+|.||..||..|+..+.+||+||..+.+
T Consensus 16 ~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 16 PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 5555555554443322 1234567899999999988888889999999999999999999999999999875
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.55 E-value=1.8e-15 Score=94.69 Aligned_cols=50 Identities=40% Similarity=0.916 Sum_probs=45.8
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
++..|+||++.|..++....++ |+|.||..||..|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4568999999999888888898 9999999999999999999999999875
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.9e-15 Score=98.67 Aligned_cols=52 Identities=37% Similarity=0.998 Sum_probs=47.2
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
...+..|+||++.|..+..+..++|+|.||..||..|+..+.+||+||.+|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 3456789999999998888888899999999999999999999999999875
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=96.80 Aligned_cols=52 Identities=31% Similarity=0.841 Sum_probs=46.7
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
...+..|+||++.|..+..+..++|+|.||..||..|+..+.+||+||..|.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3456789999999988778888999999999999999999999999999875
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=9.4e-15 Score=97.75 Aligned_cols=53 Identities=34% Similarity=0.855 Sum_probs=47.3
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
..++..|+||++.|..+..+..++|+|.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence 34567899999999988888889999999999999999999999999998753
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.6e-14 Score=98.08 Aligned_cols=51 Identities=24% Similarity=0.663 Sum_probs=42.5
Q ss_pred ccccccceecccccc-----------CCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQD-----------KQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.. ++.++.++ |+|.||..||.+|+..+.+||+||.++.
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 456789999998864 33455665 9999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=4e-14 Score=88.38 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=43.1
Q ss_pred cccccceeccccccC-CceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDK-QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
++..|+||++.|.+. +....++|+|.||..||..|+....+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456899999998654 34677889999999999999999999999999874
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=4.5e-14 Score=92.49 Aligned_cols=52 Identities=27% Similarity=0.667 Sum_probs=44.9
Q ss_pred ccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 115 SCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
.++..|+||++.+.++ +..+.++|+|.||..||..|+..+.+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999998764 455778999999999999999999999999998764
No 10
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.8e-14 Score=90.61 Aligned_cols=53 Identities=26% Similarity=0.649 Sum_probs=45.1
Q ss_pred cccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 114 RSCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
..+...|+||++.|.++ ..++.++|+|.||..||..|+..+.+||+||.+|..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 34567899999998864 344778999999999999999999999999998854
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=88.36 Aligned_cols=51 Identities=25% Similarity=0.673 Sum_probs=43.8
Q ss_pred cccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 116 CRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
++..|+||++.+.++ +....++|+|.||..||..|+..+.+||+||.++..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999998764 445778999999999999999999999999998753
No 12
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.40 E-value=1.6e-13 Score=97.99 Aligned_cols=52 Identities=25% Similarity=0.557 Sum_probs=43.7
Q ss_pred cccccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
+.++..|+||++.|...- .++.++|+|.||..||..|+..+.+||+||..+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 346788999999988541 3566789999999999999999999999999853
No 13
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.40 E-value=1.9e-13 Score=97.62 Aligned_cols=50 Identities=30% Similarity=0.584 Sum_probs=40.5
Q ss_pred cccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHh-----cCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLA-----AHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~v~ 165 (167)
.+..|+||++.|..+. .+..++|+|.||..||..|+. .+.+||+||..+.
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 3568999999997642 233678999999999999994 4669999998774
No 14
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=90.97 Aligned_cols=48 Identities=25% Similarity=0.495 Sum_probs=43.1
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.+.++ +.++|+|.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 4567899999998776 78899999999999999998899999999874
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-13 Score=89.25 Aligned_cols=50 Identities=24% Similarity=0.540 Sum_probs=43.7
Q ss_pred ccccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
...++..|+||++.+.++ +.+ +|+|.||..||..|+..+..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 334567899999999876 666 89999999999999999999999999875
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.6e-13 Score=90.24 Aligned_cols=49 Identities=29% Similarity=0.622 Sum_probs=43.2
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
......|+||++.|.++ +.++|+|.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 34467899999999876 77899999999999999999999999999863
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.35 E-value=3.2e-13 Score=87.85 Aligned_cols=48 Identities=33% Similarity=0.880 Sum_probs=42.0
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.+..|+||++.+.++ ...++|+|.||..||..|+..+.+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999998754 367899999999999999999999999998874
No 18
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.35 E-value=2.2e-13 Score=100.85 Aligned_cols=47 Identities=30% Similarity=0.772 Sum_probs=42.7
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
++..|+||++.|.++ +.++|||.||..||..|+..+.+||+||.++.
T Consensus 52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456799999999877 78999999999999999999999999999874
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=88.79 Aligned_cols=53 Identities=26% Similarity=0.597 Sum_probs=44.4
Q ss_pred ccccccccceeccccccCCc-eEEecCCCcccHHhHHHHHhcC---CCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQ-IAKLSCSHKFHLDCVLPWLAAH---PHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~v~ 165 (167)
...+...|+||++.|.+.+. .+.++|+|.||..||..|+... ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 33456789999999987543 5788999999999999999876 79999999764
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=85.70 Aligned_cols=50 Identities=20% Similarity=0.548 Sum_probs=42.5
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVLV 166 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~~ 166 (167)
..++..|+||++.+.++ +.++|+|.||..||..|+. ....||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 34567899999999877 5589999999999999994 56799999998753
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=9.5e-13 Score=87.45 Aligned_cols=49 Identities=18% Similarity=0.522 Sum_probs=42.7
Q ss_pred cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC--CCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH--PHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v~ 165 (167)
..++..|+||++.|.++ +.++ |+|.||..||..|+..+ ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34567899999999887 7899 99999999999999865 69999999764
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=86.96 Aligned_cols=51 Identities=29% Similarity=0.656 Sum_probs=43.1
Q ss_pred ccccccccceeccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCcccCccC
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA---AHPHCPYCRTPVLV 166 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~CR~~v~~ 166 (167)
...++..|+||++.+.++ +.++|+|.||..||..|+. ....||+||..+..
T Consensus 16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 334567899999999876 7789999999999999996 45589999998864
No 23
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-13 Score=88.21 Aligned_cols=48 Identities=31% Similarity=0.832 Sum_probs=42.4
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
..++..|+||++.+.+ +.++|+|.||..||..|+.....||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3456789999999876 67899999999999999998999999998875
No 24
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=89.30 Aligned_cols=52 Identities=23% Similarity=0.636 Sum_probs=43.3
Q ss_pred ccccccccceeccccccCCceEEecCC-----CcccHHhHHHHHhcC--CCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCS-----HKFHLDCVLPWLAAH--PHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~-----H~Fh~~Ci~~Wl~~~--~~CP~CR~~v~ 165 (167)
...++..|.||+++|..++.+ .+||. |.||..||.+|+..+ .+||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 444567899999999876665 58996 999999999999765 49999999875
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.30 E-value=1.3e-12 Score=87.16 Aligned_cols=48 Identities=25% Similarity=0.509 Sum_probs=42.8
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.++|||.||..||..|+.. ..+||+|+.++.
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4567899999999887 78899999999999999986 779999999875
No 26
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.28 E-value=2.9e-13 Score=98.34 Aligned_cols=53 Identities=25% Similarity=0.540 Sum_probs=2.5
Q ss_pred ccccccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.+..++.|+||++.|..+. .+..++|+|.||..||..|+..+.+||+||.++.
T Consensus 44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ECCCC---------------------------------------------------------------
T ss_pred ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3345789999999997531 2233579999999999999999999999999853
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.28 E-value=1e-12 Score=92.22 Aligned_cols=50 Identities=28% Similarity=0.709 Sum_probs=43.4
Q ss_pred ccccccccceeccccccCCceEE-ecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~ 165 (167)
...++..|+||++.|.++ +. ++|||.||..||..|+... ..||+||.++.
T Consensus 18 ~l~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 334577899999999876 67 8899999999999999887 69999999874
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=2.6e-12 Score=86.33 Aligned_cols=49 Identities=27% Similarity=0.656 Sum_probs=42.9
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc------CCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA------HPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~v~ 165 (167)
..++..|+||++.|.++ +.++|+|.||..||..|+.. ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34567899999999877 68899999999999999987 669999999875
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=3.4e-12 Score=81.85 Aligned_cols=45 Identities=29% Similarity=0.706 Sum_probs=38.8
Q ss_pred ccccccccceeccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA---AHPHCPYC 160 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 160 (167)
...++..|+||++.+.++ +.++|+|.||..||..|+. ....||+|
T Consensus 16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 344577899999999877 7789999999999999998 45589998
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.25 E-value=8.8e-13 Score=87.93 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=42.4
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-------CCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-------HPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~v~ 165 (167)
..++..|+||++.|.++ +.++|+|.||..||..|+.. ...||+||..+.
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34567899999999877 66899999999999999976 568999999875
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=3.5e-12 Score=90.36 Aligned_cols=49 Identities=27% Similarity=0.650 Sum_probs=43.3
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
..++..|+||++.|.++ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 34577899999999876 676 89999999999999999999999998875
No 32
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.25 E-value=4.5e-12 Score=87.10 Aligned_cols=48 Identities=19% Similarity=0.520 Sum_probs=42.0
Q ss_pred cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC--CCCCCcccCc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH--PHCPYCRTPV 164 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v 164 (167)
..++..|+||++.|.++ +.++ |||.||..||..|+... ..||+||..+
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34567899999999987 8899 99999999999999754 5999999986
No 33
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.5e-12 Score=89.70 Aligned_cols=48 Identities=27% Similarity=0.622 Sum_probs=42.6
Q ss_pred ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 4567899999999876 666 89999999999999998899999998775
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=4.2e-12 Score=85.25 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=42.7
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc------CCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA------HPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~v~ 165 (167)
..++..|+||++.+.++ +.++|+|.||..||..|+.. ...||+||..+.
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34567899999999876 66899999999999999987 679999999875
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.23 E-value=3.3e-12 Score=92.59 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=42.5
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCccC
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVLV 166 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~~ 166 (167)
.++..|+||++.|.++ +.++|||.||..||..|+.... .||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4567899999999877 7889999999999999998554 99999998753
No 36
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.23 E-value=3.9e-12 Score=91.99 Aligned_cols=52 Identities=27% Similarity=0.667 Sum_probs=44.8
Q ss_pred ccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 115 SCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
.++..|+||++.|.++ ...+.++|||.||..||..|+..+.+||+||..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 3467899999999765 455788999999999999999999999999998753
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=5.6e-12 Score=79.19 Aligned_cols=44 Identities=32% Similarity=0.813 Sum_probs=37.4
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA---AHPHCPYC 160 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C 160 (167)
..++..|+||++.+.++ +.++|+|.||..||..|+. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567899999999887 6689999999999999954 45689998
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.7e-11 Score=79.16 Aligned_cols=50 Identities=22% Similarity=0.485 Sum_probs=40.5
Q ss_pred ccccceecc-ccccCCce-EEecCCCcccHHhHHHHHhc-CCCCCCcccCccC
Q 044515 117 RKICSVCLE-GFQDKQQI-AKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVLV 166 (167)
Q Consensus 117 ~~~C~IC~e-~~~~~~~~-~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~~ 166 (167)
+..|+||++ .+.++... +.++|||.||..||..|+.. ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 567999999 77776533 45789999999999999764 4689999998753
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=1.1e-11 Score=93.99 Aligned_cols=48 Identities=27% Similarity=0.817 Sum_probs=41.7
Q ss_pred ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAA-HPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.+ +|+|.||..||..|+.. ...||+||..+.
T Consensus 52 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3567899999999876 666 89999999999999987 778999999874
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1e-11 Score=87.86 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=41.0
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC---CCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP---HCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~---~CP~CR~~v~ 165 (167)
+...|+||++.+.++ +.++|||.||..||..|+.... .||+||..+.
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 456899999999877 6689999999999999998654 8999999875
No 41
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.15 E-value=1.8e-11 Score=88.17 Aligned_cols=50 Identities=20% Similarity=0.561 Sum_probs=43.4
Q ss_pred ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~ 165 (167)
...++..|+||++.+.++ +.++|+|.||..||..|+.... .||+||.++.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 445577899999999877 7789999999999999998765 9999999875
No 42
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.15 E-value=5.1e-12 Score=90.38 Aligned_cols=49 Identities=24% Similarity=0.617 Sum_probs=42.5
Q ss_pred cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~ 165 (167)
..++..|+||++.|.++ +.++|||.||..||..|+.. ...||+||..+.
T Consensus 12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 34567899999999877 78899999999999999976 668999999864
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.14 E-value=1.7e-11 Score=92.22 Aligned_cols=49 Identities=24% Similarity=0.476 Sum_probs=42.6
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCccC
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVLV 166 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~~ 166 (167)
.++..|+||++.|.++ +.++|+|.||..||..|+.... .||+||..+..
T Consensus 76 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 3467899999999877 7799999999999999998664 89999998753
No 44
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=81.32 Aligned_cols=48 Identities=29% Similarity=0.686 Sum_probs=40.0
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHHHhcC--CCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH--PHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v~ 165 (167)
....|+||++.|..+.. -..|+|.||..||.+||+.+ .+||+|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 45689999999987632 22699999999999999877 79999998764
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.10 E-value=3e-11 Score=86.43 Aligned_cols=48 Identities=31% Similarity=0.647 Sum_probs=42.3
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~ 165 (167)
.++..|+||++.+.++ +.++|||.||..||..|+.. ...||+||.++.
T Consensus 21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 3467899999999877 77899999999999999987 679999999875
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.09 E-value=5.7e-11 Score=81.19 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=43.7
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.++|||.|+..||..|+..+.+||+|+.++.
T Consensus 12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 3467899999999998 88999999999999999998899999998764
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.08 E-value=4e-11 Score=86.61 Aligned_cols=52 Identities=27% Similarity=0.674 Sum_probs=44.3
Q ss_pred cccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
..+...|+||++.|..+ ...+.++|+|.||..||..|+....+||+||..+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34567899999998763 34467889999999999999999999999999875
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.06 E-value=6.8e-11 Score=83.31 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=44.0
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.++|||.|+..||..|+..+.+||+|+.++.
T Consensus 27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 3567899999999999 88999999999999999998889999999875
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.04 E-value=1.9e-10 Score=80.74 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=43.8
Q ss_pred ccccccceeccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCS-HKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.++|| |.|+..||..|+..+.+||+|+.++.
T Consensus 20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 3567899999999999 889999 99999999999998889999999875
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.03 E-value=9.9e-11 Score=75.87 Aligned_cols=47 Identities=19% Similarity=0.480 Sum_probs=40.6
Q ss_pred cccccceeccccccCCceEEe--cCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKL--SCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
++..|.||++...+. +.+ ||||. ||..|+..|+..+..||+||.++.
T Consensus 7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 466899999987655 555 99999 899999999998899999999874
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.02 E-value=7.5e-11 Score=87.88 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=42.6
Q ss_pred ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPV 164 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v 164 (167)
...++..|+||++.+.++ +.++|||.||..||..|+.... .||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 345677899999999888 7789999999999999998665 899999865
No 52
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=1.3e-10 Score=78.36 Aligned_cols=52 Identities=19% Similarity=0.410 Sum_probs=40.0
Q ss_pred cccccccceeccccccCCceEEe--cCCCcccHHhHHHHHh-cCCCCCCcccCccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL--SCSHKFHLDCVLPWLA-AHPHCPYCRTPVLV 166 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l--pC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~~ 166 (167)
..++..|+||++.+...+. ..+ +|||.||..|+..++. ....||.||.++..
T Consensus 8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 3456789999998864322 334 4999999999999875 35689999998753
No 53
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.99 E-value=1.7e-10 Score=74.55 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=40.1
Q ss_pred cccccceeccccccCCceEEe--cCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKL--SCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.+..|.||++...+. ..+ ||||. ||..|+..|...+..||+||.+|.
T Consensus 6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 456899999986655 455 99998 999999999988889999999874
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=5.3e-11 Score=75.05 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=38.9
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.++|+|.||..||..| ...||+||..+.
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 4567899999999887 77899999999999883 668999999875
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.96 E-value=3e-10 Score=97.31 Aligned_cols=47 Identities=26% Similarity=0.726 Sum_probs=41.5
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~ 165 (167)
....|+||++.+.++ +.+||||.||..|+..|+. ....||+||.++.
T Consensus 331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 346899999998766 8899999999999999998 6789999999874
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.96 E-value=7e-11 Score=84.87 Aligned_cols=46 Identities=30% Similarity=0.638 Sum_probs=40.9
Q ss_pred ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.|.++ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 4577899999999887 777 8999999999999987 88999998874
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.94 E-value=1.6e-10 Score=76.75 Aligned_cols=44 Identities=23% Similarity=0.565 Sum_probs=38.6
Q ss_pred ccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.+.+. +.+||+|. ||..|+..| ..||+||.++.
T Consensus 22 ~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred ccCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 3467899999998776 88899999 999999998 88999999874
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.90 E-value=5.8e-10 Score=84.70 Aligned_cols=50 Identities=20% Similarity=0.564 Sum_probs=43.3
Q ss_pred ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~ 165 (167)
...++..|+||++.|.++ +.++|||.||..||..|+... ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 445678999999999887 778999999999999999764 49999998875
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.86 E-value=8.8e-10 Score=88.65 Aligned_cols=48 Identities=10% Similarity=0.099 Sum_probs=42.4
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~ 165 (167)
.....|+||++.|.++ ++++|||+||..||..|+..+ .+||+|+.++.
T Consensus 206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3567899999999998 889999999999999999864 45999999875
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1e-09 Score=76.15 Aligned_cols=45 Identities=20% Similarity=0.547 Sum_probs=39.2
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC------CCCCC--cccC
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH------PHCPY--CRTP 163 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~------~~CP~--CR~~ 163 (167)
++..|+||++.|.++ +.++ |||.|+..||..|+..+ .+||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 466899999999988 8886 99999999999999754 48999 9855
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.79 E-value=5.7e-10 Score=94.12 Aligned_cols=52 Identities=21% Similarity=0.619 Sum_probs=40.1
Q ss_pred ccccccceeccccccCCceE-----EecCCCcccHHhHHHHHhcC-----------CCCCCcccCccC
Q 044515 115 SCRKICSVCLEGFQDKQQIA-----KLSCSHKFHLDCVLPWLAAH-----------PHCPYCRTPVLV 166 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~-----~lpC~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~v~~ 166 (167)
+...+|+||++.+.+...+. ...|+|.||..||.+|+... .+||+|+.+|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45678999999988732221 23599999999999999742 379999998764
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.9e-09 Score=71.57 Aligned_cols=44 Identities=23% Similarity=0.569 Sum_probs=37.0
Q ss_pred ccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.+.+. +.+||+|. ||..|+.. ...||+||.++.
T Consensus 23 ~~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVIT 67 (75)
T ss_dssp HHHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred CCCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence 3466899999998776 77899999 99999964 478999998875
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=6.9e-09 Score=67.96 Aligned_cols=46 Identities=33% Similarity=0.614 Sum_probs=38.1
Q ss_pred ccccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
...++..|.||++...+. +.+||+|. ||..|+.. ...||+||..|.
T Consensus 11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 334567899999987665 88999999 99999884 579999999875
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.71 E-value=6.9e-09 Score=80.31 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=42.4
Q ss_pred ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~ 165 (167)
.+...|+||++.|.++ +.++|||+|+..||..|+..+ .+||+|+.++.
T Consensus 104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4567899999999988 889999999999999999764 47999998874
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.67 E-value=1.2e-08 Score=65.45 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=38.3
Q ss_pred cccccccceeccccccCCceEEecCC--C---cccHHhHHHHHhc--CCCCCCcccCccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSCS--H---KFHLDCVLPWLAA--HPHCPYCRTPVLV 166 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC~--H---~Fh~~Ci~~Wl~~--~~~CP~CR~~v~~ 166 (167)
+++...|.||+++..+ . ..+||. + .||..||..|+.. +.+||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGN--E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCCC--c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456789999998432 3 358854 4 9999999999964 5789999998753
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.65 E-value=7.8e-09 Score=71.31 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=37.6
Q ss_pred ccccceeccccccCCceEEecCCCcccHHhHHHHHhc--------CCCCCC--cccC
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA--------HPHCPY--CRTP 163 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~--------~~~CP~--CR~~ 163 (167)
...|+||++.+..+..+...+|+|.||..|+..++.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 5579999999887654333479999999999999863 137999 9987
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.64 E-value=4.3e-09 Score=70.87 Aligned_cols=43 Identities=28% Similarity=0.581 Sum_probs=36.8
Q ss_pred cccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
++..|.||++.+.+. +.+||||. ||..|+..| ..||+||.++.
T Consensus 17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 456899999987765 88999999 999999876 39999999874
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.48 E-value=4.1e-08 Score=80.03 Aligned_cols=48 Identities=21% Similarity=0.480 Sum_probs=40.7
Q ss_pred ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcC--CCCCC--cccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAH--PHCPY--CRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~--~~CP~--CR~~v~ 165 (167)
..+..|+||++.|.++ +.. .|||+|+..||..|+..+ ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3567899999999988 664 899999999999999764 47999 998664
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=1.8e-08 Score=85.10 Aligned_cols=44 Identities=23% Similarity=0.609 Sum_probs=38.8
Q ss_pred ccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
.++..|+||++.+.++ +.+||||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 4567899999998776 88899999 999999987 78999999874
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.39 E-value=9.8e-08 Score=61.23 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=40.7
Q ss_pred cccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 118 KICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
..|+||++.+.++ +.+ +|||.|.+.||.+|+..+.+||+.+.++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 4699999999987 778 79999999999999988889999998774
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.07 E-value=2.5e-06 Score=59.81 Aligned_cols=45 Identities=27% Similarity=0.574 Sum_probs=36.5
Q ss_pred ccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCcc
Q 044515 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVL 165 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~ 165 (167)
.|.+|--.+..- ...+||.|.||.+|+..|.+ ..++||.|+.+|.
T Consensus 3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 477787776543 46789999999999999985 4679999999874
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.89 E-value=6.9e-06 Score=65.95 Aligned_cols=47 Identities=26% Similarity=0.648 Sum_probs=39.1
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC--CCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP--HCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~v~ 165 (167)
....|.||.+-+..+ ...+ |+|.||..|+..|+..+. .||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 367899999998877 4444 999999999999997654 9999998754
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.97 E-value=0.014 Score=39.76 Aligned_cols=35 Identities=11% Similarity=0.353 Sum_probs=25.4
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHH
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPW 150 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~W 150 (167)
++..|.||.+.+..+....-+.|+|.||..|+..+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 35689999986433322223889999999999983
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.29 E-value=0.03 Score=35.97 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=32.6
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC----CCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP----HCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~v~ 165 (167)
....|.||.+. + .++.-. |...||..|+.+.+.... .||.|.....
T Consensus 11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 35579999753 2 333333 999999999988776433 7999976543
No 75
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=92.93 E-value=0.085 Score=35.62 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=24.0
Q ss_pred cccccccceeccccccCCceEEec---CCCcccHHhHHHH
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLS---CSHKFHLDCVLPW 150 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lp---C~H~Fh~~Ci~~W 150 (167)
...+..|.||--. ... ..+| |+-+||..|+.+-
T Consensus 12 ~~~D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCccccc-ccc---ceeccccccccccHhhcccc
Confidence 3467889998643 223 3455 8999999999996
No 76
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=92.86 E-value=0.045 Score=37.69 Aligned_cols=46 Identities=24% Similarity=0.660 Sum_probs=37.4
Q ss_pred cccccceeccccccCCceEEecC-CCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSC-SHKFHLDCVLPWLAAHPHCPYCRTPVLV 166 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC-~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~ 166 (167)
+-..|-.|+-... ..+.| .|.+|..|+...+.....||+|..+++.
T Consensus 27 G~~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 27 GPQFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred CcccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 4568999987643 23455 7999999999999999999999998763
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=90.26 E-value=0.14 Score=32.09 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=31.5
Q ss_pred cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCcccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRTP 163 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 163 (167)
...+..|.||... + .++.-. |...||..|+..-+... -.||.|...
T Consensus 8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999874 2 333333 89999999998754322 279999653
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.01 E-value=0.14 Score=33.17 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=33.2
Q ss_pred ccccccceeccccccCCceEEec-CCCcccHHhHHHHHhc----CCCCCCcccCc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAA----HPHCPYCRTPV 164 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~v 164 (167)
.+...|.||..... +..++.-. |..-||..|+..-... .-.||.|...+
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence 44567999987753 33334433 8999999999764432 34799997654
No 79
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=87.08 E-value=0.088 Score=33.06 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=33.8
Q ss_pred ccccccceeccccccCCceEEec-CCCcccHHhHHHHHh-----cCCCCCCcccC
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA-----AHPHCPYCRTP 163 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~ 163 (167)
.+...|+||...+.+....+.-. |..=||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45667999998876544444443 899999999864322 34579999653
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=86.46 E-value=0.09 Score=32.97 Aligned_cols=48 Identities=29% Similarity=0.733 Sum_probs=31.8
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcC----CCCCCcccCcc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAH----PHCPYCRTPVL 165 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~----~~CP~CR~~v~ 165 (167)
+..+..|.||... + .++.- .|...||..|+.+-+... -.||.|.....
T Consensus 6 d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 58 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL 58 (61)
T ss_dssp CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred cCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence 4456789999863 2 22222 389999999998644332 26999976543
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.06 E-value=0.27 Score=29.32 Aligned_cols=43 Identities=33% Similarity=0.700 Sum_probs=28.0
Q ss_pred ccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCccc
Q 044515 119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRT 162 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~ 162 (167)
.|.||...-..+ .++.-. |...||..|+.+=+... -.||.|..
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888753322 333333 99999999997644332 26999965
No 82
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=84.74 E-value=0.36 Score=32.32 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=28.2
Q ss_pred cccccceeccccccCCceEEec--CCCcccHHhHHHHHhc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS--CSHKFHLDCVLPWLAA 153 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~~ 153 (167)
....|.+|.+.+++.. .+..| =.|.||..|-...++.
T Consensus 14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence 4567999999998763 23344 3799999999998864
No 83
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=83.53 E-value=0.75 Score=30.44 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=28.2
Q ss_pred ccccccccceeccccccCCceEEec-CCCcccHHhHHHH
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPW 150 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~W 150 (167)
.+.+...|.+|...|..-..-.+-. ||++||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 4455678999999998654434444 9999999997553
No 84
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=83.26 E-value=0.52 Score=31.06 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=27.4
Q ss_pred ccccccccceeccccccCCceEEe-cCCCcccHHhHHH
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLP 149 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~ 149 (167)
.+.+...|.+|...|..-..-.+- .||.+||..|...
T Consensus 15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 444566899999999865443444 4999999999754
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=82.32 E-value=0.93 Score=42.81 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred cccccceeccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCS-HKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
++..|+|-++-+.++ +++|.| +.|-+.+|..|+..+.+||.=|.++.
T Consensus 890 ~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 890 DEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp GGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred HHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 466799999999999 899987 68999999999998899998877664
No 86
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=81.68 E-value=0.81 Score=32.65 Aligned_cols=37 Identities=19% Similarity=0.392 Sum_probs=27.3
Q ss_pred ccccccccceeccccccCCceEEec-CCCcccHHhHHH
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLP 149 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~ 149 (167)
.+.+...|.+|...|..-..-.+-. ||++||..|...
T Consensus 65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 3445568999999998654434544 999999999654
No 87
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=81.09 E-value=0.96 Score=30.34 Aligned_cols=38 Identities=18% Similarity=0.199 Sum_probs=27.4
Q ss_pred ccccccccceeccccccCCceEEe-cCCCcccHHhHHHH
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPW 150 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~W 150 (167)
.+.+...|.+|...|..-..-.+- .||++||..|....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 334556899999998765433444 49999999997654
No 88
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.92 E-value=0.91 Score=29.96 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=27.1
Q ss_pred ccccccccceeccccccCCceEEe-cCCCcccHHhHHH
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLP 149 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~ 149 (167)
.+.+...|.+|...|..-..-.+- .||.+||..|...
T Consensus 10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 445567899999999755433444 4999999999654
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.28 E-value=0.38 Score=33.31 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=25.5
Q ss_pred ccccccceeccccccCCceEE-ecCCCcccHHhHHHHHh
Q 044515 115 SCRKICSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLA 152 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~ 152 (167)
.++..|.||.+.-... .++. -.|...||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccc
Confidence 4567899998863322 2233 34999999999987653
No 90
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=78.76 E-value=0.52 Score=31.89 Aligned_cols=47 Identities=34% Similarity=0.750 Sum_probs=32.4
Q ss_pred ccccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC----CCCCcccC
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP----HCPYCRTP 163 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 163 (167)
....+..|.+|... + .+..-. |...||..|+.+=+.... .||.|...
T Consensus 21 ~d~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 44556789999975 3 233333 899999999977554322 69999753
No 91
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.32 E-value=1.5 Score=28.43 Aligned_cols=48 Identities=23% Similarity=0.484 Sum_probs=31.5
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHh-----cCCCCCCcccCc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA-----AHPHCPYCRTPV 164 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~v 164 (167)
+...| ||...+......+.-. |..=||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34456 8988775444444444 899999999853221 345899998654
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=78.16 E-value=0.44 Score=33.25 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=28.8
Q ss_pred cccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCccc
Q 044515 118 KICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRT 162 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~ 162 (167)
..|.||...-.+.+.+..-. |...||..|+.+-+... -.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 35777776432333333333 99999999997655432 27999974
No 93
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.87 E-value=0.16 Score=31.09 Aligned_cols=45 Identities=38% Similarity=0.834 Sum_probs=30.0
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCC----CCCCccc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHP----HCPYCRT 162 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 162 (167)
...+..|.||... + .++.- .|...||..|+.+-+.... .||.|..
T Consensus 6 ~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 3456789999974 2 23333 3999999999986543322 5888853
No 94
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.63 E-value=0.2 Score=31.78 Aligned_cols=45 Identities=29% Similarity=0.659 Sum_probs=30.4
Q ss_pred ccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCcccC
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRTP 163 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 163 (167)
..+..|.||... + .++.-. |...||..|+.+-+... -.||.|...
T Consensus 6 ~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 356789999964 2 233333 99999999998644322 269988653
No 95
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.97 E-value=0.21 Score=33.91 Aligned_cols=47 Identities=34% Similarity=0.761 Sum_probs=31.2
Q ss_pred ccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC----CCCCccc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP----HCPYCRT 162 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~----~CP~CR~ 162 (167)
.++..|.||...-.. ..++.-. |...||..|+.+=+.... .||.|..
T Consensus 14 ~~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 456679999986432 2334443 999999999975443222 6999864
No 96
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.48 E-value=0.89 Score=28.43 Aligned_cols=42 Identities=24% Similarity=0.617 Sum_probs=29.7
Q ss_pred cccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCc
Q 044515 118 KICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYC 160 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~C 160 (167)
..|-.|+..|.+.. ...-+ |++.||.+|=.---+.-..||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 45999999986442 12234 99999999965544455689988
No 97
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=74.39 E-value=2.2 Score=26.88 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=24.6
Q ss_pred ccccccceeccccccCCceEEe--cCCCcccHHhHH
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL--SCSHKFHLDCVL 148 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l--pC~H~Fh~~Ci~ 148 (167)
.....|.+|...+.+....+.- .|..=||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3456799999998766555554 488999999983
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=73.24 E-value=1.4 Score=27.50 Aligned_cols=50 Identities=18% Similarity=0.571 Sum_probs=32.8
Q ss_pred ccccccceecccccc-CCceEEec-CCCcccHHhHHHHHh-------cCCCCCCcccCc
Q 044515 115 SCRKICSVCLEGFQD-KQQIAKLS-CSHKFHLDCVLPWLA-------AHPHCPYCRTPV 164 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~-~~~~~~lp-C~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~v 164 (167)
.++..|.||...... ...++.-. |...||..|+.+-+. ..-.||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 356789999986533 23333334 999999999886432 123798886543
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.06 E-value=3.6 Score=30.07 Aligned_cols=46 Identities=24% Similarity=0.509 Sum_probs=31.6
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHh---------c--CCCCCCcccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLA---------A--HPHCPYCRTP 163 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~---------~--~~~CP~CR~~ 163 (167)
+..+..|.+|.+. ++ +..- .|...||..||.+-+. . .=.||.|...
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4456789999875 32 2333 3999999999997652 1 1279999753
No 100
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=72.47 E-value=0.26 Score=35.24 Aligned_cols=47 Identities=17% Similarity=0.426 Sum_probs=28.6
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYC 160 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~C 160 (167)
+.+...|.+|...|..-..-.+- .||.+||..|..........|-.|
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 34456899999998765433444 499999999976554444556555
No 101
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=72.14 E-value=3.5 Score=26.39 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=31.7
Q ss_pred cccccccceecccc-ccCCceEEec-CCCcccHHhHHHHHhc--CCCCCCccc
Q 044515 114 RSCRKICSVCLEGF-QDKQQIAKLS-CSHKFHLDCVLPWLAA--HPHCPYCRT 162 (167)
Q Consensus 114 ~~~~~~C~IC~e~~-~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~--~~~CP~CR~ 162 (167)
..++..|.||...- .+.+.++.-. |.-.||..|+..-..- .=.||.|..
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34567899998764 2333444444 9999999999753211 226888854
No 102
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=72.09 E-value=0.34 Score=29.96 Aligned_cols=44 Identities=36% Similarity=0.747 Sum_probs=29.7
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCcccC
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRTP 163 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~ 163 (167)
.+..|.||... + .++.-. |...||..|+.+-+... -.||.|...
T Consensus 4 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46679999874 3 233333 99999999998644322 268888653
No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.75 E-value=6.4 Score=27.08 Aligned_cols=32 Identities=25% Similarity=0.567 Sum_probs=21.7
Q ss_pred ccccceecccc-----ccCCceEEe-cCCCcccHHhHH
Q 044515 117 RKICSVCLEGF-----QDKQQIAKL-SCSHKFHLDCVL 148 (167)
Q Consensus 117 ~~~C~IC~e~~-----~~~~~~~~l-pC~H~Fh~~Ci~ 148 (167)
...|.+|+..- ..++.++.- .|+..||..|+.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 45799998752 122334443 399999999995
No 104
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=69.53 E-value=1 Score=33.36 Aligned_cols=47 Identities=19% Similarity=0.460 Sum_probs=30.9
Q ss_pred ccccccceeccccccCCceEEec-CCCcccHHhHHHHH-----hcCCCCCCccc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWL-----AAHPHCPYCRT 162 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl-----~~~~~CP~CR~ 162 (167)
.+...| ||..........+.-. |..-||..|+.--. .....||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345678 9998765444444444 89999999985321 12448999975
No 105
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=68.83 E-value=2.3 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=24.9
Q ss_pred cccccceeccccccCCceEEe-cCCCcccHHhHHH
Q 044515 116 CRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLP 149 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~ 149 (167)
+...|.+|...|..-..-.+- .||.+||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 345799999998765443444 4999999988654
No 106
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=68.35 E-value=3.2 Score=27.68 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=31.8
Q ss_pred cccccccceecccc-ccCCceEEec-CCCcccHHhHHHHHhc--CCCCCCcccC
Q 044515 114 RSCRKICSVCLEGF-QDKQQIAKLS-CSHKFHLDCVLPWLAA--HPHCPYCRTP 163 (167)
Q Consensus 114 ~~~~~~C~IC~e~~-~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~ 163 (167)
..++..|.||...- .+.+.++.-. |.-.||..|+..-... .-.||.|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCc
Confidence 34567899999763 2222333333 8999999999763211 2268888653
No 107
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=67.33 E-value=2.6 Score=26.93 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=24.1
Q ss_pred cccceeccccccCCceEEe-cCCCcccHHhHHH
Q 044515 118 KICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLP 149 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~ 149 (167)
..|.+|...|..-..-.+- .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 5799999998765433444 4999999999643
No 108
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=67.02 E-value=2.4 Score=29.54 Aligned_cols=43 Identities=26% Similarity=0.691 Sum_probs=27.5
Q ss_pred ccccccccceeccccccCCceEEec---CCCcccHHhHHHHHhcCC----CCCCcc
Q 044515 113 CRSCRKICSVCLEGFQDKQQIAKLS---CSHKFHLDCVLPWLAAHP----HCPYCR 161 (167)
Q Consensus 113 ~~~~~~~C~IC~e~~~~~~~~~~lp---C~H~Fh~~Ci~~Wl~~~~----~CP~CR 161 (167)
...++..|.+|.+. + .++.-. |...||..|+. +.... .||.|.
T Consensus 11 ~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp CCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred cCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 34466789999842 3 233333 77899999987 43322 577664
No 109
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=66.44 E-value=1.1 Score=30.58 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=28.0
Q ss_pred cccceeccccccCCceEEec-CCCcccHHhHHHHHhc---CCCCCCccc
Q 044515 118 KICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAA---HPHCPYCRT 162 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~---~~~CP~CR~ 162 (167)
..| ||......+ .++.-. |..-||..|+..-... ...||.|+.
T Consensus 29 vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 787765444 233333 8999999998653322 248999974
No 110
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=65.32 E-value=8.1 Score=26.13 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=34.6
Q ss_pred cccccceeccccccC---CceEEe-cCCCcccHHhHHHHH-hcCCCCCCcccCcc
Q 044515 116 CRKICSVCLEGFQDK---QQIAKL-SCSHKFHLDCVLPWL-AAHPHCPYCRTPVL 165 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~---~~~~~l-pC~H~Fh~~Ci~~Wl-~~~~~CP~CR~~v~ 165 (167)
....|.||-+++... +..+.. -|+--.|..|+.-=. ..++.||.|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 446899999986532 221222 278889999986644 45779999988763
No 111
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.36 E-value=2.3 Score=32.79 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=25.5
Q ss_pred ccccceeccccccCCceEEec-CCCcccHHhHHH
Q 044515 117 RKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLP 149 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~ 149 (167)
+..|.+|...|..-..-.+.. ||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 468999999997654445554 999999999654
No 112
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=64.03 E-value=5.4 Score=23.63 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=27.9
Q ss_pred ccceeccccccCCceEEe--cCCCcccHHhHHHHH----hcCCCCCCcc
Q 044515 119 ICSVCLEGFQDKQQIAKL--SCSHKFHLDCVLPWL----AAHPHCPYCR 161 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~l--pC~H~Fh~~Ci~~Wl----~~~~~CP~CR 161 (167)
.|.||...+.++...+.- .|..=||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477888887655444443 377789999975321 2456899885
No 113
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=63.04 E-value=1.5 Score=36.72 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=0.0
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHh-------cCCCCCCcccCc
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLA-------AHPHCPYCRTPV 164 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~-------~~~~CP~CR~~v 164 (167)
+.+...|.+|...|..-..-.+. .||++||..|....+. ....|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 34566899999998754322333 4999999999876542 124677775543
No 114
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.32 E-value=2.9 Score=32.51 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=25.8
Q ss_pred ccccceeccccccCCceEEec-CCCcccHHhHHHH
Q 044515 117 RKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPW 150 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~W 150 (167)
+..|.+|...|..-..-.+.. ||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 458999999998654444554 9999999997643
No 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=59.36 E-value=2.5 Score=27.07 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=30.6
Q ss_pred ccccceeccccccCCceEEe-cCCCcccHHhHHHHH---------hcCCCCCCcccCccC
Q 044515 117 RKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWL---------AAHPHCPYCRTPVLV 166 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl---------~~~~~CP~CR~~v~~ 166 (167)
...| ||....... ..+.- .|..=||..|+.--. .....||.|+..-.+
T Consensus 16 ~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3456 898876533 33333 389999999984211 245689999765443
No 116
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=58.29 E-value=0.75 Score=29.43 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=32.0
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHH----hcCCCCCCcccCccC
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWL----AAHPHCPYCRTPVLV 166 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl----~~~~~CP~CR~~v~~ 166 (167)
+...| ||.....++...+.-. |..=||..|+.--- .....||.|+..-.|
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~p 69 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGP 69 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSS
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCC
Confidence 44568 6987765554444443 88889999986431 123479999765444
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=57.15 E-value=1.1 Score=29.42 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=25.7
Q ss_pred ccceeccccccCCceEEec-CCCcccHHhHHHHHhcC-----CCCCCccc
Q 044515 119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH-----PHCPYCRT 162 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~-----~~CP~CR~ 162 (167)
.|.||...-.. ..++.-. |...||..|+.+-+... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35555544222 2333333 89999999998755431 36999875
No 118
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=56.93 E-value=5.5 Score=27.56 Aligned_cols=33 Identities=21% Similarity=0.513 Sum_probs=21.9
Q ss_pred cccceeccccc------cCCceEEe-cCCCcccHHhHHHH
Q 044515 118 KICSVCLEGFQ------DKQQIAKL-SCSHKFHLDCVLPW 150 (167)
Q Consensus 118 ~~C~IC~e~~~------~~~~~~~l-pC~H~Fh~~Ci~~W 150 (167)
..|.||+..-. ++..++.- .|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 46999987541 12233443 39999999998754
No 119
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=55.13 E-value=3.6 Score=29.65 Aligned_cols=33 Identities=15% Similarity=0.323 Sum_probs=23.1
Q ss_pred cccccceeccccc-c-CCceEEecCCCcccHHhHH
Q 044515 116 CRKICSVCLEGFQ-D-KQQIAKLSCSHKFHLDCVL 148 (167)
Q Consensus 116 ~~~~C~IC~e~~~-~-~~~~~~lpC~H~Fh~~Ci~ 148 (167)
++..|.+|...|. . +....-..|.|.+|..|-.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 4678999999984 2 2222334599999998854
No 120
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.61 E-value=1.7 Score=28.39 Aligned_cols=43 Identities=28% Similarity=0.577 Sum_probs=27.8
Q ss_pred ccceeccccccCCceEEec-CCCcccHHhHHHHHhc-----CCCCCCccc
Q 044515 119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAA-----HPHCPYCRT 162 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 162 (167)
.|.||...-. +..++.-. |...||..|+.+=+.. .=.||.|..
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 6788886422 23333333 9999999999864432 226998864
No 121
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=52.94 E-value=11 Score=27.05 Aligned_cols=46 Identities=24% Similarity=0.504 Sum_probs=29.9
Q ss_pred cccccccceeccccccCCceEEe-cCCCcccHHhHHHHH------hc-----CCCCCCcccC
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWL------AA-----HPHCPYCRTP 163 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl------~~-----~~~CP~CR~~ 163 (167)
+..+..|.||-+. + .+.-- .|...||..||.+-+ .. .=.|+.|...
T Consensus 54 Dg~~~~C~vC~dG---G-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---S-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---C-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4456679999865 2 12222 389999999999742 11 1279999643
No 122
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=52.26 E-value=1.9 Score=27.54 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=26.3
Q ss_pred ccceeccccccCCceEEec-CCCcccHHhHHHHHhc-----CCCCCCccc
Q 044515 119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAA-----HPHCPYCRT 162 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 162 (167)
.|.||...-. +..++.-. |...||..|+.+=+.. .=.||.|..
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 4556665322 22333333 8999999999864432 227999865
No 123
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=52.15 E-value=10 Score=32.02 Aligned_cols=47 Identities=19% Similarity=0.446 Sum_probs=29.9
Q ss_pred ccccceeccccccCCceEEecCCCc--ccHHhHHHHHhcCC--CCCCcccCcc
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHK--FHLDCVLPWLAAHP--HCPYCRTPVL 165 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~--Fh~~Ci~~Wl~~~~--~CP~CR~~v~ 165 (167)
...|+|=...+..+ +.-..|.|. |-..-+........ .||+|...+.
T Consensus 249 SL~CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 35688877777766 344569998 55444444333333 7999987764
No 124
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=50.56 E-value=4.1 Score=27.07 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=31.6
Q ss_pred cccccceecccccc-CCceEEec-CCCcccHHhHHHHHhc--------CCCCCCccc
Q 044515 116 CRKICSVCLEGFQD-KQQIAKLS-CSHKFHLDCVLPWLAA--------HPHCPYCRT 162 (167)
Q Consensus 116 ~~~~C~IC~e~~~~-~~~~~~lp-C~H~Fh~~Ci~~Wl~~--------~~~CP~CR~ 162 (167)
.+..|.||...-.. .+.++.-. |...||..|+.+-+.. .=.|+.|..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 46689999986432 23334444 9999999999875431 126888864
No 125
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=50.01 E-value=12 Score=31.30 Aligned_cols=47 Identities=19% Similarity=0.418 Sum_probs=31.1
Q ss_pred ccccceeccccccCCceEEecCCCc--ccHHhHHHHHhcCC--CCCCcccCcc
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHK--FHLDCVLPWLAAHP--HCPYCRTPVL 165 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~--Fh~~Ci~~Wl~~~~--~CP~CR~~v~ 165 (167)
...|+|=...+..+ ..-..|.|. |-..-+........ .||+|...+.
T Consensus 215 SL~CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45699888887766 244569998 65554444433333 7999988764
No 126
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=47.94 E-value=2.8 Score=33.07 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=24.5
Q ss_pred ccceeccccccCCceEEec-CCCcccHHhHHHHHhc-----CCCCCCccc
Q 044515 119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAA-----HPHCPYCRT 162 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~-----~~~CP~CR~ 162 (167)
.|.+|...-. +..+..-. |...||..|+.+=+.. .=.||.|..
T Consensus 176 ~C~vC~~~~~-~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCC-CCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 5777775422 22333333 9999999999865432 126999965
No 127
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=47.69 E-value=4.7 Score=25.74 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=26.9
Q ss_pred ccccccceeccccccCCceEEe-c--CC-CcccHHhHHHHHhc----CCCCCCcccC
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL-S--CS-HKFHLDCVLPWLAA----HPHCPYCRTP 163 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l-p--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~ 163 (167)
.+...| ||..... +. ++.- . |. .-||..|+. +.. .-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345567 8987542 32 2222 2 54 589999997 332 2379999764
No 128
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=47.15 E-value=7.1 Score=24.89 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=23.8
Q ss_pred cccccccceeccccccCCceEEecC-CCcccHHhHHHH
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKLSC-SHKFHLDCVLPW 150 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~lpC-~H~Fh~~Ci~~W 150 (167)
.++..-|.||.++- .+.-+.| +..||..|...-
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHH
Confidence 34455699999882 2355668 789999997764
No 129
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=46.35 E-value=9.4 Score=25.66 Aligned_cols=45 Identities=27% Similarity=0.574 Sum_probs=27.2
Q ss_pred ccccccceeccccccCCceEEe-c--CC-CcccHHhHHHHHhc----CCCCCCcccCc
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL-S--CS-HKFHLDCVLPWLAA----HPHCPYCRTPV 164 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l-p--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~~v 164 (167)
.+...| ||..... +. ++.- . |. .-||..|+. +.. .-.||.|+..-
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345567 9988643 32 1221 2 44 579999987 322 33799997653
No 130
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=45.67 E-value=8.5 Score=26.35 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=32.5
Q ss_pred cccceeccccccCCceEEe--cCCCcccHHhHHHHH---h-------cCCCCCCcccCc
Q 044515 118 KICSVCLEGFQDKQQIAKL--SCSHKFHLDCVLPWL---A-------AHPHCPYCRTPV 164 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~l--pC~H~Fh~~Ci~~Wl---~-------~~~~CP~CR~~v 164 (167)
..|.||...+.+....+.- .|..=||..|+.--- . ....||.|+..-
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 4699999998665555554 388999999984221 0 344899997543
No 131
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.34 E-value=7.5 Score=26.69 Aligned_cols=40 Identities=20% Similarity=0.418 Sum_probs=22.7
Q ss_pred cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
..|++|..++....... +|..|-.. +.....||.|..++.
T Consensus 33 ~~CP~Cq~eL~~~g~~~-------hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHA-------RCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEETTEE-------EETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecCCEE-------ECccccch-hhccccCcchhhHHH
Confidence 68999998865332222 23333221 234457898887763
No 132
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.35 E-value=9.4 Score=26.27 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=10.0
Q ss_pred ccHHhHHHHHh
Q 044515 142 FHLDCVLPWLA 152 (167)
Q Consensus 142 Fh~~Ci~~Wl~ 152 (167)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 133
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=44.15 E-value=9.5 Score=26.29 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=10.0
Q ss_pred ccHHhHHHHHh
Q 044515 142 FHLDCVLPWLA 152 (167)
Q Consensus 142 Fh~~Ci~~Wl~ 152 (167)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 134
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=43.88 E-value=8.8 Score=28.23 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=23.6
Q ss_pred cccccceeccccc--cCCceEEecCCCcccHHhH
Q 044515 116 CRKICSVCLEGFQ--DKQQIAKLSCSHKFHLDCV 147 (167)
Q Consensus 116 ~~~~C~IC~e~~~--~~~~~~~lpC~H~Fh~~Ci 147 (167)
.+..|.+|...|. .+....-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 4678999999764 3333344459999999996
No 135
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.99 E-value=6 Score=21.83 Aligned_cols=14 Identities=21% Similarity=0.646 Sum_probs=10.8
Q ss_pred ccccceeccccccC
Q 044515 117 RKICSVCLEGFQDK 130 (167)
Q Consensus 117 ~~~C~IC~e~~~~~ 130 (167)
...|+||+..+...
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 46799999887755
No 136
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.44 E-value=12 Score=23.23 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=26.2
Q ss_pred cccccceeccccccCCceEEecCCCcccH-HhHHHHHhcCCCCCCcccCc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHL-DCVLPWLAAHPHCPYCRTPV 164 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~-~Ci~~Wl~~~~~CP~CR~~v 164 (167)
+-..|..|...+.... ....=+..||. .|...- ....|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~--~~~~~g~~yC~~~cy~~~--f~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG--HAEHEGKPYCNHPCYSAM--FGPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTT--EEEETTEEEETTTHHHHH--SSCCCSSCCCSS
T ss_pred CCCCccccCccCCCCc--eECcCCeEeeCHHHHHHH--hCccCCCcCCce
Confidence 3466788877776542 22234566777 476543 345677776544
No 137
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.62 E-value=21 Score=22.57 Aligned_cols=38 Identities=21% Similarity=0.576 Sum_probs=21.8
Q ss_pred ccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v 164 (167)
...|..|-+.+...+.+.. -+..||..| ..|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L 52 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVIL 52 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBC
T ss_pred CCCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCc
Confidence 4468888877765543322 356677655 3455665544
No 138
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.56 E-value=32 Score=22.01 Aligned_cols=26 Identities=12% Similarity=0.341 Sum_probs=13.7
Q ss_pred cccceeccccccCCceEEecCCCcccHHh
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
..|..|-+.+... .+..-+..||..|
T Consensus 26 ~~C~~C~~~I~~~---~v~a~~~~~H~~C 51 (90)
T 2dar_A 26 PMCAHCNQVIRGP---FLVALGKSWHPEE 51 (90)
T ss_dssp CBBSSSCCBCCSC---EEEETTEEECTTT
T ss_pred CCCccCCCEecce---EEEECCccccccC
Confidence 4577777666422 2223456666554
No 139
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=35.46 E-value=4.3 Score=24.91 Aligned_cols=42 Identities=26% Similarity=0.594 Sum_probs=25.2
Q ss_pred cccccceeccccccCCceEEe-c--CC-CcccHHhHHHHHhc----CCCCCCccc
Q 044515 116 CRKICSVCLEGFQDKQQIAKL-S--CS-HKFHLDCVLPWLAA----HPHCPYCRT 162 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l-p--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 162 (167)
+...| ||..... + .++.- . |. .-||..|+. +.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44556 8988642 3 22222 2 54 589999987 322 237998864
No 140
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.87 E-value=4.3 Score=24.97 Aligned_cols=42 Identities=29% Similarity=0.619 Sum_probs=24.7
Q ss_pred cccccceeccccccCCceEEe-c--CC-CcccHHhHHHHHhc----CCCCCCccc
Q 044515 116 CRKICSVCLEGFQDKQQIAKL-S--CS-HKFHLDCVLPWLAA----HPHCPYCRT 162 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l-p--C~-H~Fh~~Ci~~Wl~~----~~~CP~CR~ 162 (167)
+...| ||..... + .++.- . |. .-||..|+. +.. .-.||.|..
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 8987632 3 22221 2 44 579999997 332 237998864
No 141
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.69 E-value=27 Score=21.80 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=16.5
Q ss_pred ccccceeccccccCCceEEecCCCcccHHh
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
...|..|-+.+... .+..-+..||..|
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~C 41 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDRHRHPEC 41 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSCEECTTT
T ss_pred CCccccCCCCccCc---EEEECcceeCcCc
Confidence 34688888776642 2233566777666
No 142
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=33.85 E-value=9.4 Score=20.14 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=19.2
Q ss_pred cccceeccccccCCceEEecCCCcccHHhH
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCV 147 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci 147 (167)
..|+.|....-..+.+. .=+..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 36999998776554332 34788998873
No 143
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=32.91 E-value=17 Score=22.64 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=23.9
Q ss_pred ccccccceecc-ccccCCceEEecCCCcccHHhHHHH
Q 044515 115 SCRKICSVCLE-GFQDKQQIAKLSCSHKFHLDCVLPW 150 (167)
Q Consensus 115 ~~~~~C~IC~e-~~~~~~~~~~lpC~H~Fh~~Ci~~W 150 (167)
.+...|.||+. .|.++-.-.-.-|.-.||..|-..|
T Consensus 7 ~d~~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v 43 (62)
T 2a20_A 7 GDAPTCGICHKTKFADGCGHNCSYCQTKFCARCGGRV 43 (62)
T ss_dssp SCCCCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEE
T ss_pred CCcchhhhhccceeccCCCccccccCCeeecccCCEe
Confidence 34668999998 5766644333347778887775554
No 144
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.76 E-value=26 Score=21.08 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=5.2
Q ss_pred CCcccHHhHHH
Q 044515 139 SHKFHLDCVLP 149 (167)
Q Consensus 139 ~H~Fh~~Ci~~ 149 (167)
+..||..|...
T Consensus 51 ~~~yC~~cy~~ 61 (70)
T 2d8z_A 51 DFAYCLNCFCD 61 (70)
T ss_dssp SSEECHHHHHH
T ss_pred CeEECHHHHHH
Confidence 44455555433
No 145
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=31.26 E-value=9.6 Score=24.25 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=28.5
Q ss_pred cceeccccccCCceEEec-CCCcccHHhHHHHHh-----cCCCCCCcccC
Q 044515 120 CSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA-----AHPHCPYCRTP 163 (167)
Q Consensus 120 C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~ 163 (167)
-.||...+......+.-. |..=||..|+.---. ....||.|+..
T Consensus 12 yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 348887765443444443 899999999954321 24579999754
No 146
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=31.10 E-value=4.4 Score=25.62 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=28.5
Q ss_pred cccccceeccccccCCceEEec-CCCcccHHhHHHHHh---cCCCCCCccc
Q 044515 116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA---AHPHCPYCRT 162 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~---~~~~CP~CR~ 162 (167)
+...| ||..... +...+.-. |..=||..|+..--. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 34567 9987655 33334333 889999999864321 2347988864
No 147
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.06 E-value=40 Score=20.93 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=13.2
Q ss_pred ccceeccccccCCceEEecCCCcccHHh
Q 044515 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
.|..|-+.+...+..+ ..-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~~~-~a~~~~~H~~C 43 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNV-EYKGTVWHKDC 43 (82)
T ss_dssp BCSSSCCBCCSSSCEE-ECSSCEEETTT
T ss_pred cCccCCcccccCceEE-EECcccccccc
Confidence 5666666655433221 22355566544
No 148
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.03 E-value=26 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=14.6
Q ss_pred cccceeccccccCCceEEecCCCcccHHh
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
..|..|-+.+...+.+ ..-+..||..|
T Consensus 10 ~~C~~C~~~I~~~~~v--~a~~~~~H~~C 36 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKV--SSLGKDWHKFC 36 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EETTEEEETTT
T ss_pred CCCcCCCCEeECCeEE--EECCeEeeCCC
Confidence 3577777766644322 22455666554
No 149
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.00 E-value=17 Score=22.10 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=13.3
Q ss_pred cccceeccccccCCceEEecCCCcccHHhHHHH
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPW 150 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~W 150 (167)
..|..|...+.... ....=+..||..|...-
T Consensus 32 F~C~~C~~~L~~~~--f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIG--FVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSC--CEEETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCc--cEeECCeEECHHHhhhh
Confidence 34555555444331 11123445555554443
No 150
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.93 E-value=32 Score=21.95 Aligned_cols=37 Identities=19% Similarity=0.428 Sum_probs=21.8
Q ss_pred ccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v 164 (167)
...|..|-+.+... .+..-+..||..| ..|-.|...|
T Consensus 25 ~~~C~~C~~~I~~~---~~~a~~~~~H~~C--------F~C~~C~~~L 61 (89)
T 1x64_A 25 MPLCDKCGSGIVGA---VVKARDKYRHPEC--------FVCADCNLNL 61 (89)
T ss_dssp CCBCTTTCCBCCSC---CEESSSCEECTTT--------CCCSSSCCCT
T ss_pred CCCcccCCCEeccc---EEEECCceECccC--------CEecCCCCCC
Confidence 34688888776642 2233567777665 3466665554
No 151
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.92 E-value=37 Score=25.13 Aligned_cols=35 Identities=20% Similarity=0.622 Sum_probs=24.1
Q ss_pred cccccccceeccccccCCceEEe---cCCCcccHHhHHHHHh
Q 044515 114 RSCRKICSVCLEGFQDKQQIAKL---SCSHKFHLDCVLPWLA 152 (167)
Q Consensus 114 ~~~~~~C~IC~e~~~~~~~~~~l---pC~H~Fh~~Ci~~Wl~ 152 (167)
+..+..|.||-+. ..++.- .|...||..||...+.
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 3345678888864 223332 3889999999998864
No 152
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.30 E-value=23 Score=23.34 Aligned_cols=10 Identities=30% Similarity=0.963 Sum_probs=5.5
Q ss_pred ccceeccccc
Q 044515 119 ICSVCLEGFQ 128 (167)
Q Consensus 119 ~C~IC~e~~~ 128 (167)
.|+.|..++.
T Consensus 4 ~CP~C~~~l~ 13 (81)
T 2jrp_A 4 TCPVCHHALE 13 (81)
T ss_dssp CCSSSCSCCE
T ss_pred CCCCCCCccc
Confidence 4666665544
No 153
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.15 E-value=27 Score=20.82 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=12.1
Q ss_pred ccceeccccccCCceEEecCCCcccHHh
Q 044515 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 119 ~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
.|+.|-+.+. ++ .+..-+..||..|
T Consensus 7 ~C~~C~~~I~-~~--~~~a~~~~~H~~C 31 (66)
T 1nyp_A 7 ICGACRRPIE-GR--VVNAMGKQWHVEH 31 (66)
T ss_dssp EETTTTEECC-SC--EECCTTSBEETTT
T ss_pred CCcccCCEec-ce--EEEECccccccCc
Confidence 4666666555 21 2223455555544
No 154
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.42 E-value=20 Score=21.49 Aligned_cols=38 Identities=26% Similarity=0.649 Sum_probs=21.6
Q ss_pred cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v 164 (167)
..|..|.+.+...+.++. .=+..||..|. .|-.|..++
T Consensus 12 ~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp CBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred ccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 467788777765543221 34556776653 455565554
No 155
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.43 E-value=11 Score=26.10 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=15.2
Q ss_pred ecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515 136 LSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164 (167)
Q Consensus 136 lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v 164 (167)
..||+.|. .-+.....||.|+..-
T Consensus 71 ~~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 71 RKCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hhCcCeec-----ccCCCCCCCcCCCCCc
Confidence 45899881 1123345899998754
No 156
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=26.33 E-value=12 Score=32.61 Aligned_cols=46 Identities=26% Similarity=0.516 Sum_probs=30.0
Q ss_pred ccccceeccccccCCceEEec-CCCcccHHhHHHHHh-----cCCCCCCcccC
Q 044515 117 RKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA-----AHPHCPYCRTP 163 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~ 163 (167)
...| ||...+......+... |..=||..|+.---. ....||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3445 8988765444445444 999999999854221 23489999753
No 157
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.25 E-value=38 Score=21.34 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=18.2
Q ss_pred cccccceeccccccCCceEEecCCCcccHHh
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
....|..|-+.+...+.+. .-+..||..|
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a~~~~wH~~C 42 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--VNGHFFHRSC 42 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--BTTBCCBTTT
T ss_pred CCCCCcccCCCcccceEEE--ECCCeeCCCc
Confidence 3456888888876554322 3466777766
No 158
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.77 E-value=8.3 Score=23.85 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=25.3
Q ss_pred cccccceeccccccCCceEEe-c--CC-CcccHHhHHHHHh--cCCCCCCccc
Q 044515 116 CRKICSVCLEGFQDKQQIAKL-S--CS-HKFHLDCVLPWLA--AHPHCPYCRT 162 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l-p--C~-H~Fh~~Ci~~Wl~--~~~~CP~CR~ 162 (167)
+...| ||..... + .++.- . |. .-||..|+.---. ..-.||.|+.
T Consensus 10 e~~yC-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCCC-C-CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCccc
Confidence 34556 8988632 3 22222 2 44 7899999872111 1337998864
No 159
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.54 E-value=47 Score=22.59 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=32.6
Q ss_pred ccccceecccccc-CCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515 117 RKICSVCLEGFQD-KQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165 (167)
Q Consensus 117 ~~~C~IC~e~~~~-~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~ 165 (167)
-..|..|...+.+ +.. ....=+..||..|...-+.....|-.|..+|.
T Consensus 32 CF~C~~C~~~L~~~~~~-~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTS-SYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp HHCCSSSCCCTTTSEEC-CEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred CCCcCCCCCcccccCCe-EEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 4568888887752 211 22335678899998886665558999988775
No 160
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=25.37 E-value=42 Score=22.86 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=20.0
Q ss_pred cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v 164 (167)
..|..|...+..........=+..||..|...-+.....|..|..+|
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCcc
Confidence 34555555553211111122344555555544332222555555544
No 161
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.28 E-value=44 Score=20.10 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=4.0
Q ss_pred cceeccccc
Q 044515 120 CSVCLEGFQ 128 (167)
Q Consensus 120 C~IC~e~~~ 128 (167)
|..|.+.+.
T Consensus 8 C~~C~~~I~ 16 (72)
T 1wyh_A 8 CSACGETVM 16 (72)
T ss_dssp CSSSCCBCC
T ss_pred CccCCCccc
Confidence 444444443
No 162
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.79 E-value=31 Score=21.25 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=14.5
Q ss_pred ccccceeccccccCCceEEecCCCcccHHhHHH
Q 044515 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLP 149 (167)
Q Consensus 117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~ 149 (167)
-..|..|...+..+... ...=+..||..|...
T Consensus 31 CF~C~~C~~~L~~~~~f-~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 31 CALCVRCGQMFAEGEEM-YLQGSSIWHPACRQA 62 (73)
T ss_dssp TSCCSSSCCCCCSSCCC-EEETTEEECTTHHHH
T ss_pred cCEeCCCCCCCCCCCee-EeeCCEEEChHHChH
Confidence 34566666555432211 122344555555544
No 163
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=24.56 E-value=5.1 Score=26.04 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=15.6
Q ss_pred cCCCcccHHhHHHHHhcCCCCC
Q 044515 137 SCSHKFHLDCVLPWLAAHPHCP 158 (167)
Q Consensus 137 pC~H~Fh~~Ci~~Wl~~~~~CP 158 (167)
.|++.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 5899999999988844 4553
No 164
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.15 E-value=47 Score=19.92 Aligned_cols=9 Identities=22% Similarity=0.715 Sum_probs=4.2
Q ss_pred cceeccccc
Q 044515 120 CSVCLEGFQ 128 (167)
Q Consensus 120 C~IC~e~~~ 128 (167)
|..|-+.+.
T Consensus 8 C~~C~~~I~ 16 (72)
T 1x4k_A 8 CQECKKTIM 16 (72)
T ss_dssp BSSSCCCCC
T ss_pred CccCCCccc
Confidence 444444444
No 165
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=55 Score=19.89 Aligned_cols=28 Identities=29% Similarity=0.640 Sum_probs=13.8
Q ss_pred cccceeccccccCCceEEecCCCcccHHh
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~C 146 (167)
..|..|.+.+...+.++ ..-+..||..|
T Consensus 12 ~~C~~C~~~I~~~~~~~-~a~~~~~H~~C 39 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIV-NSNGELYHEQC 39 (77)
T ss_dssp CBCSSSCCBCCSTTTCE-EETTEEECTTT
T ss_pred CCchhcCCccCCCceEE-EeCccEecccc
Confidence 45777766665333222 12345555544
No 166
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.07 E-value=37 Score=20.90 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=12.7
Q ss_pred ccceecccccc--CCceEEecCCCcccHHh
Q 044515 119 ICSVCLEGFQD--KQQIAKLSCSHKFHLDC 146 (167)
Q Consensus 119 ~C~IC~e~~~~--~~~~~~lpC~H~Fh~~C 146 (167)
.|..|-+.+.. ... .+..-+..||..|
T Consensus 7 ~C~~C~~~I~~~g~~~-~~~a~~~~wH~~C 35 (76)
T 1x68_A 7 GCVACSKPISGLTGAK-FICFQDSQWHSEC 35 (76)
T ss_dssp CCTTTCCCCCTTTTCC-EEEETTEEEEGGG
T ss_pred CCccCCCcccCCCCce-eEEECCcccCccc
Confidence 46666666553 111 2222455566555
No 167
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.41 E-value=52 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.665 Sum_probs=23.0
Q ss_pred ccccccceeccccccCCceEEe---cCCCcccHHhHHHHH
Q 044515 115 SCRKICSVCLEGFQDKQQIAKL---SCSHKFHLDCVLPWL 151 (167)
Q Consensus 115 ~~~~~C~IC~e~~~~~~~~~~l---pC~H~Fh~~Ci~~Wl 151 (167)
..+..|.||-+. + .++.- .|...||..||...+
T Consensus 91 G~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 91 GYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHT
T ss_pred CCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhc
Confidence 345678888764 2 22222 488999999999987
No 168
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.69 E-value=40 Score=20.38 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=5.0
Q ss_pred ccceeccccc
Q 044515 119 ICSVCLEGFQ 128 (167)
Q Consensus 119 ~C~IC~e~~~ 128 (167)
.|..|-+.+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1x4l_A 7 GCAGCTNPIS 16 (72)
T ss_dssp SBTTTTBCCC
T ss_pred CCcCCCcccc
Confidence 3555555544
No 169
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.12 E-value=35 Score=20.47 Aligned_cols=31 Identities=13% Similarity=0.412 Sum_probs=13.7
Q ss_pred cccceeccccccCCceEEecCCCcccHHhHHHH
Q 044515 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPW 150 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~W 150 (167)
..|..|...+... . ....=+..||..|....
T Consensus 32 F~C~~C~~~L~~~-~-~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQ-R-FTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTS-C-EEECSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCC-c-cEeECCEEECHHHhHHH
Confidence 4455555554422 1 12223455555555443
No 170
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=20.92 E-value=83 Score=19.84 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=29.1
Q ss_pred cccccceeccccccCCceEEe---cCCCcccHHhHHHHHh---------cCCCCCCcccC
Q 044515 116 CRKICSVCLEGFQDKQQIAKL---SCSHKFHLDCVLPWLA---------AHPHCPYCRTP 163 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~l---pC~H~Fh~~Ci~~Wl~---------~~~~CP~CR~~ 163 (167)
+...| ||......+ ..+.- .|..=||..|+.---. ....||.|+..
T Consensus 15 ~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 15 IKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 44567 798874444 22332 4888999999853211 24589999754
No 171
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=20.83 E-value=26 Score=23.05 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=19.7
Q ss_pred cccceeccccccCCceEE---ecCCCcccHHhHHHH
Q 044515 118 KICSVCLEGFQDKQQIAK---LSCSHKFHLDCVLPW 150 (167)
Q Consensus 118 ~~C~IC~e~~~~~~~~~~---lpC~H~Fh~~Ci~~W 150 (167)
..|.||...- .+ ..+. -.|...||..|...-
T Consensus 18 l~C~iC~~~~-~G-AciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 18 LTCYLCKQKG-VG-ASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCBTTTTBCC-SS-CEEECSCTTTCCEEEHHHHHHH
T ss_pred CCCcCCCCCC-Cc-EeEecCCCCCCCcCcHHHHHHC
Confidence 4699997531 12 1122 238899999998763
No 172
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.51 E-value=42 Score=20.97 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=5.5
Q ss_pred ccceeccccc
Q 044515 119 ICSVCLEGFQ 128 (167)
Q Consensus 119 ~C~IC~e~~~ 128 (167)
.|..|-+.+.
T Consensus 17 ~C~~C~~~I~ 26 (79)
T 2cor_A 17 ICQKCHAIID 26 (79)
T ss_dssp BCTTTCCBCC
T ss_pred CCccCCCEec
Confidence 4555555554
No 173
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=20.17 E-value=33 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=20.8
Q ss_pred cccccceeccccccCCceEEecCCCcccHHhHHHHHh
Q 044515 116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA 152 (167)
Q Consensus 116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~ 152 (167)
+-..|..|...+..++.. ...=+..||..|....+.
T Consensus 35 ~CF~C~~C~~~L~~g~~f-~~~~g~~yC~~cy~~~~~ 70 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRY-LLINSDIVCEQDIYEWTK 70 (123)
T ss_dssp TTCBCTTTCCBCCTTCEE-EECSSSEEEGGGHHHHHH
T ss_pred ccCccccCCCCCCCCCcE-EeeCCEEEcHHHhHHHhc
Confidence 345677777776444322 223466777777766553
Done!