BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044516
(393 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/386 (61%), Positives = 288/386 (74%), Gaps = 7/386 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKAN 62
TFLFTSESV EGHPDK+CDQISDA+LDA L+QDPD+KVACET KT ++++ GEIT++A
Sbjct: 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 63 VNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGD 122
V+Y+K+VR+ ++IG+ G D C VLV +EQQSPDIAQGVH L + E+IGAGD
Sbjct: 78 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 123 QGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
QG MFGYATDET E MPL+ VLA +L AKL E+R+NGT PWLRPD KTQVTV+Y + GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 183 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242
++P+RVHT++IS QHDE V DE+ LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRC 302
P GDAGLTGRKII+DTY KD TKVDRS AY R AKS+V GL RR
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 303 IVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRF 362
+VQVSYAIGV PLS+ + Y T + ++E+L IVK+NFD RPG+I +LDLK+ +
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIY 372
Query: 363 LKTAAYGHFGREDPDFTWEVVKPLKY 388
+TAAYGHFGR+ F WEV K LKY
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLKY 396
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/388 (57%), Positives = 288/388 (74%), Gaps = 7/388 (1%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
M F+FTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET KT +V++ GEIT+
Sbjct: 4 MGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSM 63
Query: 61 ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
A V+Y+++VRDT ++IG+ G D C VLV +EQQSPDIAQ VH L + E++GA
Sbjct: 64 AMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVH--LDRNEEDVGA 121
Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
GDQG MFGYATDET E MPL+ +LA +L A++ ++R++G PWLRPD KTQVTV+Y +N
Sbjct: 122 GDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDN 181
Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
GA++PVR+HT++IS QH+E +T +E+ LKE VI+ V+P KYLDE T++HL PSGRFVI
Sbjct: 182 GAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVI 241
Query: 241 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
GGP GDAG+TGRKII+DTY KD TKVDRS AY R AKS+V +GL R
Sbjct: 242 GGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCR 301
Query: 301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
R +VQVSYAIGV EPLS+ + TY T + ++E+L +V +NFD RPG+I +LDLK+
Sbjct: 302 RVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKK---P 358
Query: 361 RFLKTAAYGHFGREDPDFTWEVVKPLKY 388
+ KTA YGHFGR +F WEV + L +
Sbjct: 359 IYQKTACYGHFGRS--EFPWEVPRKLVF 384
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 457 bits (1177), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/386 (58%), Positives = 285/386 (73%), Gaps = 7/386 (1%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKAN 62
F+FTSESV EGHPDK+CDQISDA+LDA L+QDP++KVACET KT +V++ GEIT+ A
Sbjct: 18 AFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAM 77
Query: 63 VNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGD 122
++Y+++VRDT ++IG+ G D C VLV +EQQSPDIAQ VH L + E++GAGD
Sbjct: 78 IDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQCVH--LDRNEEDVGAGD 135
Query: 123 QGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGA 182
QG MFGYATDET E MPL+ VLA +L ++ ++R++G PWLRPD KTQVTV+Y +NGA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGA 195
Query: 183 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242
++PVRVHT++IS QH+E +T + + LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 243 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRC 302
P GDAG+TGRKII+DTY KD TKVDRS AY R AKS+V +GL RR
Sbjct: 256 PQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRV 315
Query: 303 IVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRF 362
+VQVSYAIGV EPLS+ + TY T K ++E+L +V +NFD RPG+I +LDLK+ +
Sbjct: 316 LVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKK---PIY 372
Query: 363 LKTAAYGHFGREDPDFTWEVVKPLKY 388
KTA YGHFGR +F WEV K L +
Sbjct: 373 QKTACYGHFGRS--EFPWEVPKKLVF 396
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/384 (57%), Positives = 272/384 (70%), Gaps = 5/384 (1%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANV 63
F FTSESV+ GHPDK+CDQISDAILDACL QDP S VACET TKT L++V GEITT A +
Sbjct: 23 FFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVI 82
Query: 64 NYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQ 123
+ KIVR ++IG+ + G D C VL +EQQS DIA+GVH + K+ E+IGAGDQ
Sbjct: 83 DIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVH--VEKKEEDIGAGDQ 140
Query: 124 GHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAM 183
G MFGYATDE+ E MPL+HVL+T+L +L E R+ G PWLRPD K+QVT+EY G +
Sbjct: 141 GIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHL 200
Query: 184 VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGP 243
P+RVHT++ISTQH + V+N+EIA L+E V + VIP++ +D+K + + NPSGRFVIGGP
Sbjct: 201 KPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGP 260
Query: 244 HGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 303
GDAGLTGRKII+DTY KD +KVDRSGAY R AKS+V +GL R +
Sbjct: 261 MGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVL 320
Query: 304 VQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFL 363
VQ+SYAIGV PLS+ V+TY TG + ++ IV +NFD RPGMI L L R F
Sbjct: 321 VQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTR---PIFQ 377
Query: 364 KTAAYGHFGREDPDFTWEVVKPLK 387
KTA GHFGR DPDF WE K L+
Sbjct: 378 KTAVGGHFGRNDPDFKWEFPKELE 401
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-adenosylmethionine Synthetase
pdb|1P7L|A Chain A, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|B Chain B, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|C Chain C, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|D Chain D, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1RG9|A Chain A, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|B Chain B, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|C Chain C, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|D Chain D, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1MXA|A Chain A, S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB|A Chain A, S-Adenosylmethionine Synthetase With Adp
pdb|1MXC|A Chain A, S-adenosylmethionine Synthetase With 8-br-adp
pdb|1XRA|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
pdb|1XRC|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Length = 383
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/377 (53%), Positives = 257/377 (68%), Gaps = 12/377 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVN 64
LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET KT +V+V GEITT A V+
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVD 63
Query: 65 YEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQG 124
E+I R+T R IG+V D+G DA++C VL I +QSPDI QGV P E GAGDQG
Sbjct: 64 IEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 120
Query: 125 HMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMV 184
MFGYAT+ET MP A +L + EVRKNGT PWLRPD K+QVT +Y ++G +V
Sbjct: 121 LMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIV 178
Query: 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244
+ V++STQH E + + + E +IKP++P ++L T F +NP+GRFVIGGP
Sbjct: 179 GI--DAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPM 236
Query: 245 GDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIV 304
GD GLTGRKII+DTY KDP+KVDRS AY R AK+IVA+GLA RC +
Sbjct: 237 GDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEI 296
Query: 305 QVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLK 364
QVSYAIGV EP S+ V+T+ T K+P +++ +V+E FD RP + LDL + + +
Sbjct: 297 QVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLL---HPIYKE 353
Query: 365 TAAYGHFGREDPDFTWE 381
TAAYGHFGRE F WE
Sbjct: 354 TAAYGHFGRE--HFPWE 368
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
Length = 399
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/378 (52%), Positives = 254/378 (67%), Gaps = 8/378 (2%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANV 63
+LFTSESV+EGHPDK+ DQISDAILDA L QD S+VA ET T LV++ GEITT AN+
Sbjct: 9 YLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANI 68
Query: 64 NYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQ 123
+Y +I RDT + IG+ + D G+D C VLV ++QSPDIAQGV ++ GAGDQ
Sbjct: 69 DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQ-GAGDQ 127
Query: 124 GHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAM 183
G MFGYA DETPE MPL L+ +L + +R++G PWLRPD K+QVTV Y +
Sbjct: 128 GLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGK--- 184
Query: 184 VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGP 243
P + TV++STQH + + + E VIKP +P + F +NP+GRFVIGGP
Sbjct: 185 -PHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGP 243
Query: 244 HGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 303
GD GLTGRKII+DTY KDP+KVDRS AY R AK+IVA+GLA R +
Sbjct: 244 QGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRAL 303
Query: 304 VQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFL 363
+QVSYAIGV EP SV V+T+ TG++ D+ I ++V+E+FD RP I LDL R +
Sbjct: 304 IQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLR---PIYE 360
Query: 364 KTAAYGHFGREDPDFTWE 381
KTAAYGHFGRE+P+F+WE
Sbjct: 361 KTAAYGHFGREEPEFSWE 378
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S-
Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues
Are Replaced With Selenomethionine Residues (mse)
Length = 383
Score = 380 bits (975), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/377 (53%), Positives = 254/377 (67%), Gaps = 12/377 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVN 64
LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET KT V+V GEITT A V+
Sbjct: 4 LFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGXVLVGGEITTSAWVD 63
Query: 65 YEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQG 124
E+I R+T R IG+V D G DA++C VL I +QSPDI QGV P E GAGDQG
Sbjct: 64 IEEITRNTVREIGYVHSDXGFDANSCAVLSAIGKQSPDINQGVD---RADPLEQGAGDQG 120
Query: 125 HMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMV 184
FGYAT+ET P A +L + EVRKNGT PWLRPD K+QVT +Y ++G +V
Sbjct: 121 LXFGYATNETDVLXPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQY--DDGKIV 178
Query: 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244
+ V++STQH E + + + E +IKP++P ++L T F +NP+GRFVIGGP
Sbjct: 179 --GIDAVVLSTQHSEEIDQKSLQEAVXEEIIKPILPAEWLTSATKFFINPTGRFVIGGPX 236
Query: 245 GDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVASGLARRCIV 304
GD GLTGRKII+DTY KDP+KVDRS AY R AK+IVA+GLA RC +
Sbjct: 237 GDCGLTGRKIIVDTYGGXARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEI 296
Query: 305 QVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLK 364
QVSYAIGV EP S+ V+T+ T K+P +++ +V+E FD RP + LDL + + +
Sbjct: 297 QVSYAIGVAEPTSIXVETFGTEKVPSEQLTLLVREFFDLRPYGLIQXLDLL---HPIYKE 353
Query: 365 TAAYGHFGREDPDFTWE 381
TAAYGHFGRE F WE
Sbjct: 354 TAAYGHFGRE--HFPWE 368
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
pdb|3S82|B Chain B, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
Length = 407
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 197/392 (50%), Positives = 249/392 (63%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVN 64
LFTSESV EGHPDK+CD ISD++LDA L QDP S+VA ET T V V GE+TT A
Sbjct: 11 LFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 65 YEKI---VRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI--- 118
+ I VR+ +IG+ S D G D +C V + I QSPDIAQGV R E
Sbjct: 71 FADITNTVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTV 174
GAGDQG MFGYA ++TPE MPL LA +L +LTEVRKNG P+LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYYNENGAMVPVRVHTVLISTQHDETV-TNDEIAADLKEHVIKPVIPEKYLD----EKTI 229
E+ ++ VPVR+ TV+ISTQH + + + D++E V+ V+ + D T
Sbjct: 191 EFEDD----VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTSSTR 246
Query: 230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQA 289
+NP+G+FV+GGP GDAGLTGRKII+DTY KDP+KVDRS AY +R
Sbjct: 247 LLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 306
Query: 290 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIA 349
AK+IVA+GLA R VQV+YAIG P+ +F++T+ T + +I +IV E FD RPG I
Sbjct: 307 AKNIVAAGLAERVEVQVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAII 366
Query: 350 INLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 381
+LDL R + +TAAYGHFGR D + WE
Sbjct: 367 RDLDLLR---PIYAQTAAYGHFGRTDVELPWE 395
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 195/392 (49%), Positives = 246/392 (62%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKAN-- 62
LFTSESV EGHPDK+CD +SD++LDA L DP S+VA ET T V V GE+TT A
Sbjct: 11 LFTSESVTEGHPDKICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEA 70
Query: 63 -VNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEI--- 118
+ IVR+ +IG+ S D G D +C V + I QSPDIAQGV R E
Sbjct: 71 FADITNIVRERILDIGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 130
Query: 119 ----GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTV 174
GAGDQG MFGYA ++TPE MPL LA +L +LTEVRKNG P+LRPDGKTQVT+
Sbjct: 131 LDAQGAGDQGLMFGYAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 190
Query: 175 EYYNENGAMVPVRVHTVLISTQH-DETVTNDEIAADLKEHVIKPVIPE---KYLDEKTIF 230
Y + VPVR+ TV+ISTQH D+ + D++E V+K V+ + LD +
Sbjct: 191 AYEDR----VPVRLDTVVISTQHADDIDLVKTLDPDIREQVLKTVLDDLAHDTLDASAVR 246
Query: 231 HL-NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQA 289
L NP+G+FV+GGP GDAGLTGRKII+DTY KDP+KVDRS AY +R
Sbjct: 247 VLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 306
Query: 290 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIA 349
AK++VA+GLA R VQV+YAIG P+ +FV+T+ + + +I + + E FD RPG I
Sbjct: 307 AKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAIGEVFDLRPGAII 366
Query: 350 INLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 381
+L+L R + TAAYGHFGR D D WE
Sbjct: 367 RDLNLLR---PIYAPTAAYGHFGRTDVDLPWE 395
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 195/392 (49%), Positives = 243/392 (61%), Gaps = 22/392 (5%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVN 64
LFTSESV EGHPDK+CD ISD++LDA L DP S+VA ET T V V GE+TT A
Sbjct: 12 LFTSESVTEGHPDKICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEA 71
Query: 65 YEKI---VRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPE----- 116
+ I VR IG+ S D G D C V + I QSPDIAQGV R E
Sbjct: 72 FADITNTVRARILEIGYDSSDKGFDGATCGVNIGIGAQSPDIAQGVDTAHEARVEGAADP 131
Query: 117 --EIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTV 174
GAGDQG MFGYA + TPE MPL LA +L +LTEVRKNG P+LRPDGKTQVT+
Sbjct: 132 LDSQGAGDQGLMFGYAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTI 191
Query: 175 EYYNENGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE---KYLDEKTIF 230
Y + VPVR+ TV+ISTQH + ++ + D++E V+ V+ + + LD T+
Sbjct: 192 AYEDN----VPVRLDTVVISTQHAADIDLEKTLDPDIREKVLNTVLDDLAHETLDASTVR 247
Query: 231 HL-NPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQA 289
L NP+G+FV+GGP GDAGLTGRKII+DTY KDP+KVDRS AY +R
Sbjct: 248 VLVNPTGKFVLGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWV 307
Query: 290 AKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIA 349
AK++VA+GLA R VQV+YAIG P+ +FV+T+ T +I + + E FD RPG I
Sbjct: 308 AKNVVAAGLAERVEVQVAYAIGKAAPVGLFVETFGTETEDPVKIEKAIGEVFDLRPGAII 367
Query: 350 INLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 381
+L+L R + TAAYGHFGR D + WE
Sbjct: 368 RDLNLLR---PIYAPTAAYGHFGRTDVELPWE 396
>pdb|4DIO|A Chain A, The Crystal Structure Of Transhydrogenase From
Sinorhizobium Meliloti
pdb|4DIO|B Chain B, The Crystal Structure Of Transhydrogenase From
Sinorhizobium Meliloti
Length = 405
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 22/83 (26%)
Query: 279 DRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIV- 337
+ SG Y V+QAA +VA +A++ IV T IP + R+V
Sbjct: 256 EXSGEYQVKQAA--LVAEHIAKQDIV------------------ITTALIPGRPAPRLVT 295
Query: 338 KENFD-FRPGMIAINLDLKRGGN 359
+E D +PG + ++L ++RGGN
Sbjct: 296 REXLDSXKPGSVVVDLAVERGGN 318
>pdb|3K6U|A Chain A, M. Acetivorans Molybdate-binding Protein (moda) In
Unliganded Open Form
pdb|3K6V|A Chain A, M. Acetivorans Molybdate-Binding Protein (Moda) In
Citrate-Bound Open Form
pdb|3K6W|A Chain A, Apo And Ligand Bound Structures Of Moda From The Archaeon
Methanosarcina Acetivorans
pdb|3K6X|A Chain A, M. Acetivorans Molybdate-Binding Protein (Moda) In
Molybdate-Bound Close Form With 2 Molecules In
Asymmetric Unit Forming Beta Barrel
pdb|3K6X|B Chain B, M. Acetivorans Molybdate-Binding Protein (Moda) In
Molybdate-Bound Close Form With 2 Molecules In
Asymmetric Unit Forming Beta Barrel
Length = 354
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 42 CETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSP 101
+ +K + MV GE+ T + + Y + + N ++ V L ++IE P
Sbjct: 273 ADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSELATEFVALLLGETGQQIFIENGQP 332
Query: 102 DIAQGVHGHLSKRPEEIGA 120
I + PEE+ A
Sbjct: 333 PIVPAIAEGKDSMPEELQA 351
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 69 VRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIA-QGVHGHLSKRPEEIGAGDQGHMF 127
V R+IG ++ + A+N ++ +Q+ D+ G GH+ RPEE+ A
Sbjct: 195 VLSVIRDIGAIAQ---VHAENGDIIAEEQQRILDLGITGPEGHVLSRPEEVEAEAVNRAI 251
Query: 128 GYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVT--VEYYNENGA 182
A ++T + ++ V++ + + RK GT + P + T Y+++N A
Sbjct: 252 TIA-NQTNCPLYITKVMSKSSAEVIAQARKKGTVVYGEPITASLGTDGSHYWSKNWA 307
>pdb|2YFK|A Chain A, Crystal Structure Of A Putative Transcarbamoylase From
Enterococcus Faecalis
pdb|2YFK|B Chain B, Crystal Structure Of A Putative Transcarbamoylase From
Enterococcus Faecalis
Length = 418
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITT- 59
+E ++++ + + +I D+ L L +D ++ + NL+ + E+
Sbjct: 35 LEAVFTVADTLRYLRENNISTKIFDSGLGISLFRDNSTRTRFSFASACNLLGL--EVQDL 92
Query: 60 ---KANVNYEKIVRDTCRNIGFVSDDVGLDADNC--KVLVYIEQQSPDIAQGVH-GHLSK 113
K+ +++ + VR+T I F++D +G+ D K Y+ + S + +G G L +
Sbjct: 93 DEGKSQISHGETVRETANMISFMADIIGIRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQ 152
Query: 114 RP 115
RP
Sbjct: 153 RP 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,460,197
Number of Sequences: 62578
Number of extensions: 537101
Number of successful extensions: 1232
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1186
Number of HSP's gapped (non-prelim): 16
length of query: 393
length of database: 14,973,337
effective HSP length: 101
effective length of query: 292
effective length of database: 8,652,959
effective search space: 2526664028
effective search space used: 2526664028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)