Query 044516
Match_columns 393
No_of_seqs 153 out of 1144
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 03:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 2E-189 5E-194 1381.0 38.2 380 3-390 4-383 (388)
2 PLN02243 S-adenosylmethionine 100.0 1E-186 3E-191 1375.7 42.7 383 1-386 1-386 (386)
3 PTZ00104 S-adenosylmethionine 100.0 6E-185 1E-189 1367.9 41.4 385 2-391 9-396 (398)
4 PRK05250 S-adenosylmethionine 100.0 6E-185 1E-189 1364.4 40.2 378 3-390 2-379 (384)
5 PRK12459 S-adenosylmethionine 100.0 6E-185 1E-189 1365.5 39.7 379 1-390 1-381 (386)
6 TIGR01034 metK S-adenosylmethi 100.0 3E-184 6E-189 1356.3 39.4 374 5-390 1-374 (377)
7 KOG1506 S-adenosylmethionine s 100.0 6E-175 1E-179 1250.5 34.2 380 2-388 4-383 (383)
8 PF02773 S-AdoMet_synt_C: S-ad 100.0 1.8E-83 3.8E-88 563.9 9.6 138 240-382 1-138 (138)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 2.1E-56 4.6E-61 386.7 11.6 119 117-238 2-120 (120)
10 PF00438 S-AdoMet_synt_N: S-ad 100.0 4.7E-49 1E-53 331.5 7.1 100 2-101 1-100 (100)
11 PF01941 AdoMet_Synthase: S-ad 98.9 2.9E-07 6.4E-12 94.0 21.6 302 12-339 26-379 (396)
12 PRK04439 S-adenosylmethionine 98.9 3.1E-07 6.7E-12 94.0 21.2 297 12-336 26-372 (399)
13 COG1812 MetK Archaeal S-adenos 98.0 0.00065 1.4E-08 69.3 18.4 301 11-336 25-373 (400)
14 TIGR00590 pcna proliferating c 58.9 73 0.0016 31.0 9.3 38 281-322 204-241 (259)
15 PRK11023 outer membrane lipopr 54.9 22 0.00048 33.2 4.9 43 17-59 121-164 (191)
16 COG1325 Predicted exosome subu 52.2 20 0.00044 33.1 4.0 51 302-374 3-53 (149)
17 PRK11198 LysM domain/BON super 48.4 32 0.0007 30.8 4.7 40 20-60 24-63 (147)
18 PF02980 FokI_C: Restriction e 42.6 24 0.00053 32.4 3.0 37 278-314 77-113 (142)
19 PF14084 DUF4264: Protein of u 41.6 7.5 0.00016 30.1 -0.3 39 98-142 11-49 (52)
20 cd01269 PLX Pollux (PLX) Phosp 38.6 89 0.0019 28.4 5.8 82 51-135 6-94 (129)
21 PF04208 MtrA: Tetrahydrometha 35.9 44 0.00095 31.8 3.6 42 33-75 17-65 (176)
22 KOG3447 Mitochondrial/chloropl 32.0 16 0.00035 33.4 0.2 12 249-260 95-106 (150)
23 cd04518 TBP_archaea archaeal T 31.4 1.3E+02 0.0029 28.0 6.1 81 186-299 2-86 (174)
24 COG2441 Predicted butyrate kin 30.9 16 0.00035 37.5 -0.1 50 255-319 185-242 (374)
25 PF00352 TBP: Transcription fa 29.8 66 0.0014 26.1 3.4 56 186-242 4-64 (86)
26 COG5309 Exo-beta-1,3-glucanase 29.6 62 0.0013 33.0 3.7 85 16-108 110-194 (305)
27 PRK10568 periplasmic protein; 29.4 99 0.0021 29.2 4.9 52 23-77 61-112 (203)
28 PRK00394 transcription factor; 29.3 1.7E+02 0.0037 27.4 6.5 81 186-299 1-85 (179)
29 PF02171 Piwi: Piwi domain; I 27.1 49 0.0011 32.0 2.5 22 134-155 279-300 (302)
30 PRK11023 outer membrane lipopr 26.5 1.1E+02 0.0024 28.6 4.6 42 18-60 44-88 (191)
31 PRK14053 methyltransferase; Pr 25.9 85 0.0018 30.3 3.8 43 32-75 16-62 (194)
32 PRK04964 hypothetical protein; 23.8 65 0.0014 26.1 2.2 23 117-151 14-36 (66)
33 PRK00964 tetrahydromethanopter 23.8 85 0.0018 31.0 3.4 43 32-75 19-69 (225)
34 PF07918 CAP160: CAP160 repeat 23.7 40 0.00087 22.9 0.9 10 289-298 14-23 (27)
35 TIGR02889 spore_YpeB germinati 23.1 4.1E+02 0.0089 28.4 8.6 98 38-141 262-371 (435)
36 PF06786 UPF0253: Uncharacteri 22.0 75 0.0016 25.7 2.2 24 117-152 14-37 (66)
37 cd00652 TBP_TLF TATA box bindi 21.6 3.7E+02 0.0081 24.9 7.1 82 186-300 2-87 (174)
38 PRK07308 flavodoxin; Validated 21.3 1.7E+02 0.0037 25.4 4.6 55 282-338 15-73 (146)
39 PF02582 DUF155: Uncharacteris 20.9 24 0.00053 32.2 -0.8 118 205-357 22-144 (175)
40 KOG2978 Dolichol-phosphate man 20.8 1E+02 0.0022 30.3 3.2 36 305-341 197-232 (238)
41 COG2823 OsmY Predicted peripla 20.8 1.6E+02 0.0034 28.3 4.6 39 22-60 131-169 (196)
42 COG1419 FlhF Flagellar GTP-bin 20.6 1.1E+02 0.0023 32.6 3.7 54 317-371 284-357 (407)
43 PLN00062 TATA-box-binding prot 20.5 2.8E+02 0.0061 26.1 6.1 80 186-298 2-85 (179)
44 cd04516 TBP_eukaryotes eukaryo 20.1 3E+02 0.0065 25.7 6.2 81 186-299 2-86 (174)
45 PF12637 TSCPD: TSCPD domain; 20.0 5.1E+02 0.011 21.6 7.0 56 300-356 8-68 (95)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=2.1e-189 Score=1381.03 Aligned_cols=380 Identities=62% Similarity=1.002 Sum_probs=371.2
Q ss_pred cceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCC
Q 044516 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (393)
.+|||||||+|||||||||||||||||+||+|||+|||||||+|++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 4 ~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~ 83 (388)
T COG0192 4 YFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESD 83 (388)
T ss_pred cceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044516 83 VGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCP 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||+++|.|+++|++|||||+|||++..+ ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus 84 ~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~~-~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~ 162 (388)
T COG0192 84 YGFDAKTCAVLVAIGEQSPDIAQGVDEADE-ELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELP 162 (388)
T ss_pred cCcCccceEEEeecccCChhHHHhhhhccc-chhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999997532 3567999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 044516 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
|||||+||||||+|++ |+ +|++|++||+||||++++++++||+.++|+||+|++|+++++++|+|+|||||||||||
T Consensus 163 ~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGG 239 (388)
T COG0192 163 WLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGG 239 (388)
T ss_pred ccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCC
Confidence 9999999999999985 35 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEee
Q 044516 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDT 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~t 322 (393)
|+||||||||||||||||||+||||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 240 P~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~Vdt 319 (388)
T COG0192 240 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDT 319 (388)
T ss_pred CCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516 323 YRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390 (393)
Q Consensus 323 fGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 390 (393)
|||+++++++|.++|+++|||||++||+.|+|++| ||++||+||||||++ +|||||+|+++.|+
T Consensus 320 fgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~lk 383 (388)
T COG0192 320 FGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDELK 383 (388)
T ss_pred cCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHHHH
Confidence 99999999999999999999999999999999999 999999999999987 89999999998775
No 2
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=1.4e-186 Score=1375.72 Aligned_cols=383 Identities=94% Similarity=1.468 Sum_probs=369.9
Q ss_pred CCcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCC
Q 044516 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVS 80 (393)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (393)
|.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++
T Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (386)
T PLN02243 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVS 80 (386)
T ss_pred CCceEEEecCCCCCCChHHHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 044516 81 DDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGT 160 (393)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~ 160 (393)
+++|||+++|.|+++|++|||||+|||+.+.++..+++|||||||||||||||||+||||||+|||+|++||+++||+|.
T Consensus 81 ~~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~ 160 (386)
T PLN02243 81 DDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGT 160 (386)
T ss_pred cccCcCCCceEEEecCCCCChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999985422222458999999999999999999999999999999999999999999
Q ss_pred CCccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 044516 161 CPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (393)
Q Consensus 161 ~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~Fvi 240 (393)
+|||||||||||||+|+++.+.++|+||++||||+||++++++++||++|+|+||+|++|+++++++|+||||||||||+
T Consensus 161 ~~~l~PD~KsQVtv~Y~~~~~~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFvi 240 (386)
T PLN02243 161 CPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (386)
T ss_pred CCeecCCCceEEEEEeecCCCCccceeEeEEEEeeccCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEe
Confidence 99999999999999997543533599999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEE
Q 044516 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFV 320 (393)
Q Consensus 241 GGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V 320 (393)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|
T Consensus 241 GGP~~D~GLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~rceVQlsYAIGva~Pvsi~V 320 (386)
T PLN02243 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFV 320 (386)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCeeEEEEEEEcccCcCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCC---CCchhhhcccccccCCCCCCCCCccccccC
Q 044516 321 DTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKR---GGNSRFLKTAAYGHFGREDPDFTWEVVKPL 386 (393)
Q Consensus 321 ~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~---p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (393)
|||||+++++++|.++|+++|||||++||++|+|++ | ||++||+||||||++++|||||+|+|
T Consensus 321 ~TfGT~~~~d~~i~~~v~~~Fdlrp~~Ii~~L~L~~~~~p---iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (386)
T PLN02243 321 DTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG---RFQKTAAYGHFGRDDPDFTWEVVKPL 386 (386)
T ss_pred ecCCCCcCCHHHHHHHHHHHcCCCHHHHHHhcCCCCCCCC---cchhccccCCCCCCCCCCCccccCCC
Confidence 999999999999999999999999999999999999 8 99999999999999889999999986
No 3
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=6.2e-185 Score=1367.94 Aligned_cols=385 Identities=72% Similarity=1.152 Sum_probs=371.2
Q ss_pred CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCC
Q 044516 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (393)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++|||++|++|||+++
T Consensus 9 ~~~lfTSESVseGHPDKicDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~~ 88 (398)
T PTZ00104 9 GHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDDT 88 (398)
T ss_pred CCEEEEecCCCCCCCcHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044516 82 DVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
++|||+++|.|+++|++|||||+|||+... ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 89 ~~gfd~~t~~v~~~i~~QSpDIa~gV~~~~--~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~~ 166 (398)
T PTZ00104 89 EKGLDYKTCNVLVAIEQQSPDIAQGVHVGK--KEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGIL 166 (398)
T ss_pred ccCcCCCceEEEecCCCCChhHhhcccccc--ccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999998431 123589999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeEEEEEecC-CCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 044516 162 PWLRPDGKTQVTVEYYNE-NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240 (393)
Q Consensus 162 ~~l~pD~KsQVtv~Y~~~-~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~Fvi 240 (393)
|||||||||||||+|+++ ++.++|+||++||||+||++++++++||++|+++||+|++|.+|++++|+||||||||||+
T Consensus 167 ~~L~PD~KsQVtv~Y~~~~~~~~~P~~i~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFvi 246 (398)
T PTZ00104 167 PWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFVI 246 (398)
T ss_pred CeeccCCceEEEEEeccCCCCCccceeEEEEEEccccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEe
Confidence 999999999999999653 1115799999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEE
Q 044516 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFV 320 (393)
Q Consensus 241 GGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V 320 (393)
|||.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|
T Consensus 247 GGP~gDtGLTGRKIiVDTYGG~a~HGGGAFSGKDptKVDRSaAY~ARyiAKniVAAGlA~~ceVQlsYAIGva~Pvsi~V 326 (398)
T PTZ00104 247 GGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHV 326 (398)
T ss_pred CCCcccccccCceEEEEcCCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhccccceEEEEEEEcccCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC--CHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCCC
Q 044516 321 DTYRTGKI--PDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 391 (393)
Q Consensus 321 ~tfGt~~~--~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~~ 391 (393)
|||||+++ ++++|.++|+++|||||++||++|+|++| ||++||+||||||++++||||++|++++.++
T Consensus 327 ~TfGT~~~~~~~~~i~~~v~~~Fdl~P~~II~~L~L~~P---iY~~ta~yGHFGr~~~~f~WE~~d~~~~~~~ 396 (398)
T PTZ00104 327 NTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRP---IFQKTASYGHFGRSDPEFTWEVPKDLEHEKD 396 (398)
T ss_pred ecCCCcccCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCh---hhhhhhccCccCCCCCCCCccccchhccccc
Confidence 99999999 99999999999999999999999999999 9999999999999988899999999988764
No 4
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=6.4e-185 Score=1364.42 Aligned_cols=378 Identities=63% Similarity=1.011 Sum_probs=368.8
Q ss_pred cceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCC
Q 044516 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||++++
T Consensus 2 ~~lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~ 81 (384)
T PRK05250 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSE 81 (384)
T ss_pred CceEeecCCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044516 83 VGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCP 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||+++|.|+++|++|||||+|||+.. ..+++|||||||||||||||||+|||||++|||+|++||+++||+|.+|
T Consensus 82 ~gfd~~~~~v~~~i~~QSpdIa~gV~~~---~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~ 158 (384)
T PRK05250 82 YGFDANTCAVLVSIGEQSPDIAQGVDRD---ELDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLP 158 (384)
T ss_pred cCcCCCceEEEeecCCCChhHHhhhCcc---ccccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999852 2346899999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 044516 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
||||||||||||+|++ + +|+||++||||+||++++++++||++|+|+||+|++|++|++++|+||||||||||+||
T Consensus 159 ~l~PD~KtQVtv~Y~~--~--~p~~i~tiviS~QH~~~~~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 234 (384)
T PRK05250 159 YLRPDAKSQVTVEYEN--G--KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGG 234 (384)
T ss_pred eecCCCceEEEEEEEC--C--ceeeEEEEEEeccCCCCCCHHHHHHHHHHHHhHHhcccccCCCCeEEEECCCCCeEeCC
Confidence 9999999999999974 5 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEee
Q 044516 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDT 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~t 322 (393)
|.||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|||
T Consensus 235 P~gDtGLTGRKIiVDTYGG~a~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~~ceVQlsYAIGva~Pvsi~Vdt 314 (384)
T PRK05250 235 PQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDT 314 (384)
T ss_pred CcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCceEEEEEEeeccccCceEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516 323 YRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390 (393)
Q Consensus 323 fGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 390 (393)
|||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++++|||||+|+++.|+
T Consensus 315 fGt~~~~~~~i~~~v~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~~~~fpWE~~d~v~~l~ 379 (384)
T PRK05250 315 FGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRP---IYRKTAAYGHFGREDLDFPWEKTDKVEALK 379 (384)
T ss_pred CCCCCCCHHHHHHHHHHHcCCCHHHHHHHhCCCCc---cchhhcccCCCCCCCCCCCCcccchHHHHH
Confidence 99999999999999999999999999999999999 999999999999998899999999887654
No 5
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=5.6e-185 Score=1365.50 Aligned_cols=379 Identities=59% Similarity=0.966 Sum_probs=366.2
Q ss_pred CCcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCC
Q 044516 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVS 80 (393)
Q Consensus 1 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~ 80 (393)
|++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+|+||+++|||++|++|||+
T Consensus 1 m~~~lfTSESV~eGHPDKicDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~- 79 (386)
T PRK12459 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD- 79 (386)
T ss_pred CCceeEEecCCCCCCccHHHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC-
Confidence 6679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEEEeeccCChhhhccccCCCC--CCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHc
Q 044516 81 DDVGLDADNCKVLVYIEQQSPDIAQGVHGHLS--KRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKN 158 (393)
Q Consensus 81 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~--~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~ 158 (393)
++|||+++|.|+++|++|||||+|||+...+ +..+++|||||||||||||||||+||||||+|||+|++||+++||+
T Consensus 80 -~~gfd~~t~~v~~~i~~QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~ 158 (386)
T PRK12459 80 -ELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKD 158 (386)
T ss_pred -CCCCCCCceEEEeccccCChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999974321 1124689999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCe
Q 044516 159 GTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238 (393)
Q Consensus 159 g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~F 238 (393)
|.+|||||||||||||+|++ + +|+||+|||||+||++++++++++++|+|+||+|++|++|++++|+|||||||||
T Consensus 159 g~~~~l~PD~KsQVtv~Y~~--~--~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrF 234 (386)
T PRK12459 159 GLLPGLLPDGKTQVTVEYED--G--RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234 (386)
T ss_pred CCCCeecCCCceEEEEEeeC--C--ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCe
Confidence 99999999999999999974 5 8999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEE
Q 044516 239 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSV 318 (393)
Q Consensus 239 viGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi 318 (393)
|+|||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||
T Consensus 235 viGGP~gD~GLTGRKIiVDTYGG~~~HGGGAFSGKDptKVDRSaAY~AR~iAKniVaAGlA~~ceVQlsYAIGva~Pvsi 314 (386)
T PRK12459 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSV 314 (386)
T ss_pred EeCCCcccccccCceEEEEcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCccceEEEEEEeecccccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516 319 FVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390 (393)
Q Consensus 319 ~V~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 390 (393)
+||||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||+ +||||++|+++.|+
T Consensus 315 ~V~TfGT~~~~~~~i~~~i~~~Fdl~P~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~f~WE~~d~~~~l~ 381 (386)
T PRK12459 315 QVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLRNP---IYRKTAAYGHFGRT--LFPWEKTDKAALLR 381 (386)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHcCCCHHHHHHHcCCCCc---hhhhhcccCCCCCC--CCCcccccHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999997 59999999887664
No 6
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=2.6e-184 Score=1356.26 Aligned_cols=374 Identities=61% Similarity=1.017 Sum_probs=364.8
Q ss_pred eeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCCCC
Q 044516 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVG 84 (393)
Q Consensus 5 lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~g 84 (393)
|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||+++++|
T Consensus 1 lfTSESV~eGHPDKicDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~g 80 (377)
T TIGR01034 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 (377)
T ss_pred CCccCcCCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 044516 85 LDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWL 164 (393)
Q Consensus 85 fd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 164 (393)
||+++|.|+++|++|||||+|||+++. .+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|||
T Consensus 81 fd~~t~~v~~~i~~QSpDIa~gV~~~~---~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l 157 (377)
T TIGR01034 81 FDAKTCAVLVAIGNQSPDIAQGVDKAN---PEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWL 157 (377)
T ss_pred CCCCceEEEecCCCCChHHHhccccCc---cccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCee
Confidence 999999999999999999999998531 23589999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcCCC
Q 044516 165 RPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244 (393)
Q Consensus 165 ~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGGP~ 244 (393)
||||||||||+|++ + +|+||+|||||+||++++++++++++|+++||+|++|+++++++|+||||||||||+|||.
T Consensus 158 ~PD~KtQVtveY~~--~--~P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~ 233 (377)
T TIGR01034 158 RPDGKSQVTVQYED--N--KPVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233 (377)
T ss_pred cCCCceEEEEEEEC--C--ceeEEEEEEEecCCCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCc
Confidence 99999999999964 4 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEeecC
Q 044516 245 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYR 324 (393)
Q Consensus 245 ~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~tfG 324 (393)
||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+|||||
T Consensus 234 gDtGLTGRKIiVDTYGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaAgla~~c~VQlsYaIGva~Pvsi~V~tfG 313 (377)
T TIGR01034 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFG 313 (377)
T ss_pred cccccccceEEEeccCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCcceeEEEEEEEcCcCCCceEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516 325 TGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390 (393)
Q Consensus 325 t~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 390 (393)
|+++++++|.++|+++|||||++||++|+|++| ||++||+||||||+ +||||++|+++.|+
T Consensus 314 T~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~p---iY~~ta~yGHFGr~--~~~WE~~d~~~~l~ 374 (377)
T TIGR01034 314 TSKKSEEELLNVVKENFDLRPGGIIEKLDLLKP---IYRKTAVYGHFGRE--EFPWEKPDKLEELK 374 (377)
T ss_pred CccCCHHHHHHHHHHhcCCCHHHHHHHhCCCCc---hhhhhcccCCCCCC--CCCccccchHHHHH
Confidence 999999999999999999999999999999999 99999999999997 59999999988765
No 7
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.3e-175 Score=1250.53 Aligned_cols=380 Identities=74% Similarity=1.175 Sum_probs=373.1
Q ss_pred CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCC
Q 044516 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (393)
.+||||||||+||||||||||||||||||||+|||+|+|||||..++|||+++|||||+|.|||+++||++++.|||+++
T Consensus 4 ~tFLFTSESVgEGHPDKmCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGydds 83 (383)
T KOG1506|consen 4 ETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYDDS 83 (383)
T ss_pred ceeEEeeccccCCCchHHHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044516 82 DVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
..|||++||+|+++|.+|||||||||+- ++..+++||||||+|||||||||||.|||++.|||+|..+|+++|++|.+
T Consensus 84 skGfD~ktcnvLvaieQQSPdIAqgvH~--~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g~l 161 (383)
T KOG1506|consen 84 SKGFDYKTCNVLVAIEQQSPDIAQGVHV--DKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNGTL 161 (383)
T ss_pred ccCccccccceeeeecccCchhhhcccc--cCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccCcc
Confidence 9999999999999999999999999984 45567899999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 044516 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 162 ~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (393)
||||||.|+|||++|.+++|++.|.||||||||+||+++|++++||++++|+||++|+|+++++++|.|||||+||||||
T Consensus 162 ~WlRpdsktqVTvey~~~~Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl~PsGrFviG 241 (383)
T KOG1506|consen 162 PWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHLNPSGRFVIG 241 (383)
T ss_pred cccccCCcceEEEEEecCCCceeeeEEEEEEEecccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEecCCccEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEe
Q 044516 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD 321 (393)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~ 321 (393)
||+||+|||||||||||||||+.||||||||||||||||||||+|||+||++|+||||+||+||+|||||+++|+||+|+
T Consensus 242 GP~GDAGlTGRKIIvDtYGGwgahGGGAFSGKD~tKVDRSaAYaaRwvAkSlV~aGl~rR~lVQvSYAIGvaePlSv~v~ 321 (383)
T KOG1506|consen 242 GPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVFVF 321 (383)
T ss_pred CCCcccccccceEEEeccCcccccCCcccCCCCccccchHHHHHHHHHHHHHHHhhhhhheeeEEeeeecCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCc
Q 044516 322 TYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKY 388 (393)
Q Consensus 322 tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~ 388 (393)
||||+..++++|.++|++||||||+.|+++|+|+|| ||.+||+|||||+. +||||++.+|++
T Consensus 322 ~ygTs~~s~~ell~iv~~nFDlrPG~ivk~LdLkrp---iy~~Ta~yGHFg~~--~f~WE~pk~Lk~ 383 (383)
T KOG1506|consen 322 TYGTSTKSDKELLEIVKKNFDLRPGMIVKNLDLKRP---IYLKTAAYGHFGDQ--EFPWEVPKPLKI 383 (383)
T ss_pred eccCCCCCHHHHHHHHHhccCCCCceEEeecccccc---cccccccccccCCC--CCCccccccCCC
Confidence 999999999999999999999999999999999999 99999999999986 599999999864
No 8
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=100.00 E-value=1.8e-83 Score=563.86 Aligned_cols=138 Identities=72% Similarity=1.232 Sum_probs=122.0
Q ss_pred EcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEE
Q 044516 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVF 319 (393)
Q Consensus 240 iGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~ 319 (393)
||||.|||||||||||||||||+++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 1 iGGp~~D~GlTGRKiivDtYGg~~~hGGGafSGKD~tKvDRsaaY~aR~iAKniVaagla~~c~vqlsYaIGv~~P~si~ 80 (138)
T PF02773_consen 1 IGGPQGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLAKRCEVQLSYAIGVAEPVSIY 80 (138)
T ss_dssp S-TTTTSEEETTSSTTTTTTTTSSB-BS---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEE
T ss_pred CCCCccccccccceEEEecccCceecCCccccCCChhhhhccHHHHHHHHHHHHHHccchHHHHhhceeeeccccCcccE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccc
Q 044516 320 VDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEV 382 (393)
Q Consensus 320 V~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~ 382 (393)
||||||+++++++|.++|+++|||||++||++|+|++| ||++||+||||||++ |||||
T Consensus 81 v~tfgT~~~~d~~i~~~I~~~Fdl~P~~II~~L~L~~P---iY~~TA~yGHFGr~~--~~WE~ 138 (138)
T PF02773_consen 81 VDTFGTGKISDEEILEIIKENFDLRPAGIIKELDLRRP---IYRKTAAYGHFGRED--FPWEK 138 (138)
T ss_dssp EEETT-BSS-HHHHHHHHHHHS--SHHHHHHHCTTTSS---THGGGGSS-SSSSTT--SGGG-
T ss_pred EEeCCCccchHHHHHHHHHHHhCCcHHHHHHHhCcCCc---hhHhhhCcCCCCCCC--CCCCC
Confidence 99999999999999999999999999999999999999 999999999999986 99997
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=2.1e-56 Score=386.68 Aligned_cols=119 Identities=66% Similarity=1.082 Sum_probs=107.9
Q ss_pred CCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCCccCCCCceeEEEEEecCCCceeeeEEeEEEEeee
Q 044516 117 EIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQ 196 (393)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~Q 196 (393)
++|||||||||||||||||+||||||+|||+|++||+++|++|.+|||||||||||||+|+.+ + +|+||++||||+|
T Consensus 2 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~Q 78 (120)
T PF02772_consen 2 EIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVSTQ 78 (120)
T ss_dssp CCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEEE
T ss_pred CcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999643 5 8999999999999
Q ss_pred cCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCe
Q 044516 197 HDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238 (393)
Q Consensus 197 H~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~F 238 (393)
|+++++++++|++|+++||+||+|+++++++|+|+|||||||
T Consensus 79 H~~~i~~~~ir~~i~e~Vi~~v~~~~~~~~~t~~~INPtGrF 120 (120)
T PF02772_consen 79 HDEDISLEEIREDIKEKVIKPVIPEYLLDEDTKILINPTGRF 120 (120)
T ss_dssp E-TTS-HHHHHHHHHHHTHHHHSHGGG-BTT-EEEESTTS--
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcccccCCCCcEEEECCCCCC
Confidence 999999999999999999999999999999999999999998
No 10
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=4.7e-49 Score=331.51 Aligned_cols=100 Identities=60% Similarity=1.032 Sum_probs=93.2
Q ss_pred CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCC
Q 044516 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (393)
++||||||||++||||||||||||||||+||++||+|||||||++++|+|+|+|||++++++|++++||++|++|||+++
T Consensus 1 ~~~lfTSESV~~GHPDKicDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~ 80 (100)
T PF00438_consen 1 KKYLFTSESVSEGHPDKICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDS 80 (100)
T ss_dssp -EEEEEEEEE-TTSHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEG
T ss_pred CceEEeeccccCCCchhhhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCCh
Q 044516 82 DVGLDADNCKVLVYIEQQSP 101 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~ 101 (393)
++|||+++|+|+++|++|||
T Consensus 81 ~~gfd~~tc~V~~~i~~QSp 100 (100)
T PF00438_consen 81 EYGFDYDTCEVLVAIHEQSP 100 (100)
T ss_dssp GGTEETTTSEEEEEEEEE-H
T ss_pred cCCCCCCcceEEEeecccCc
Confidence 99999999999999999998
No 11
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=98.88 E-value=2.9e-07 Score=94.05 Aligned_cols=302 Identities=22% Similarity=0.262 Sum_probs=188.0
Q ss_pred CCCCChhhhhhHHHHHHHHH----hhc---------CCCCcEEEEEeee--------cCeEEEEEEEeece---eccHHH
Q 044516 12 NEGHPDKLCDQISDAILDAC----LEQ---------DPDSKVACETCTK--------TNLVMVFGEITTKA---NVNYEK 67 (393)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v~--------~~~v~i~GEitt~a---~vd~~~ 67 (393)
+-||||-|||-|++++=-++ |++ |+---||-++.-+ .=.|+++|..|+.. .+++.+
T Consensus 26 GiGHPDtIcD~iaE~vS~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv~~ 105 (396)
T PF01941_consen 26 GIGHPDTICDGIAEAVSRALSRYYLERFGAILHHNTDKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPVDE 105 (396)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccHHH
Confidence 67999999999999875443 322 6666666555433 23578899988764 788888
Q ss_pred HHHHHHHhhCCCC-CCCCCCCCc-eEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHH
Q 044516 68 IVRDTCRNIGFVS-DDVGLDADN-CKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLA 145 (393)
Q Consensus 68 ivR~~i~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lA 145 (393)
|+.++.|+ |=+ .--.+|.+. ..|...+.+-|+|+..-..+.. .-.+|-|-.+..||| || +-.
T Consensus 106 Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~dL~dvf~r~~----~vp~ANDTS~gVGyA--------Pl--S~~ 169 (396)
T PF01941_consen 106 IAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSPDLVDVFERGK----KVPLANDTSFGVGYA--------PL--SET 169 (396)
T ss_pred HHHHHHHH--HHHHhcccCCccccEEEEEeeCCCChHHHHHhcccc----cccccCCccceeccC--------Cc--cHH
Confidence 87666655 211 122356553 6788889999999987766431 135899999999996 44 334
Q ss_pred HHHHHHHHHHHHc----CCCCccCCCCceeEEEEEecCCCceeeeEE--eEEEEeeecCCCCCh-HHHHHHHHHhhcccc
Q 044516 146 TQLGAKLTEVRKN----GTCPWLRPDGKTQVTVEYYNENGAMVPVRV--HTVLISTQHDETVTN-DEIAADLKEHVIKPV 218 (393)
Q Consensus 146 h~l~~~l~~~Rk~----g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i--~tiviS~QH~~~i~~-~~l~~~i~e~vi~~v 218 (393)
-+|+..++..-.+ ..+|+.+.|-|.-- +++. . -+.+ -.-.|| .|-.+.+. -+.++.+++.+-. .
T Consensus 170 E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG---~R~g-~---~i~LTvA~a~v~-r~v~~~~~Y~~~k~~v~~~v~~-~ 240 (396)
T PF01941_consen 170 EKLVLETERYLNSPEFKKKFPEVGEDIKVMG---LREG-D---KITLTVAMAFVD-RYVSSLDEYFERKEEVKEEVED-Y 240 (396)
T ss_pred HHHHHHHHHHhccccccccCCCcCCCeEEEE---EEeC-C---EEEEEEEhhhhh-hhcCCHHHHHHHHHHHHHHHHH-H
Confidence 4555555544332 35899999999753 3332 1 1221 111111 22232221 2445555554433 3
Q ss_pred cCCCCCCCCcEEEECCCCCeEEcCC----------CCCcccCCceEEEecC-CCccccccccCcCCCC-CccccchhhHH
Q 044516 219 IPEKYLDEKTIFHLNPSGRFVIGGP----------HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAYIV 286 (393)
Q Consensus 219 ~~~~~~~~~t~~~INPtG~FviGGP----------~~DtGLTGRKiiVDTY-GG~~~HGGGAfSGKDp-tKVDRSaAY~A 286 (393)
+.+. .+.+.+++||+.-.--.||+ +||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=..+|
T Consensus 241 a~~~-~~~~v~v~iNt~D~~~~~~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNvlA 319 (396)
T PF01941_consen 241 AAKY-TDRDVEVHINTADDPEEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVLA 319 (396)
T ss_pred HHHh-cCCceEEEEECCCCCCCCcEEEEeceeeccccCCcccCcccccccccCCCCCCcccccCCCCCcchhhHHHHHHH
Confidence 3232 35667899998764333333 6899999995433211 1223445568899998 44666667889
Q ss_pred HHHHHHHHhh-cccceeEEEEEEEeccC--ceeEEEEeecCCCCCCHH----HHHHHHHH
Q 044516 287 RQAAKSIVAS-GLARRCIVQVSYAIGVP--EPLSVFVDTYRTGKIPDK----EILRIVKE 339 (393)
Q Consensus 287 R~iAKniVaA-GlA~~cevQlsYAIGva--~Pvsi~V~tfGt~~~~~~----~i~~~v~~ 339 (393)
..+|+.|++. .=.++|.|.|-=-||.+ +|..+.|.......+.-+ ++.+++.+
T Consensus 320 ~~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~~~~v~i~~~~~~~~~~~~~~v~~Ii~~ 379 (396)
T PF01941_consen 320 NEIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQIASVQIIPEDGVLLEDVEKEVEEIIDE 379 (396)
T ss_pred HHHHHHHHHhcCCcceEEEEEccccCCCCCCCeEEEEEEecCCCCchHHHHHHHHHHHHH
Confidence 9999999984 23568999988889975 898888887665543333 44444443
No 12
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=98.87 E-value=3.1e-07 Score=93.98 Aligned_cols=297 Identities=23% Similarity=0.302 Sum_probs=182.9
Q ss_pred CCCCChhhhhhHHHHHHHH----Hhhc---------CCCCcEEEEEeee--cC------eEEEEEEEeece---eccHHH
Q 044516 12 NEGHPDKLCDQISDAILDA----CLEQ---------DPDSKVACETCTK--TN------LVMVFGEITTKA---NVNYEK 67 (393)
Q Consensus 12 ~eGHPDKicDqISDaILDa----~L~~---------Dp~arVA~E~~v~--~~------~v~i~GEitt~a---~vd~~~ 67 (393)
+-||||-|||-|++++=-+ ||++ |+---||-+..-+ .| .++++|..|+.. .+.+.+
T Consensus 26 GiGHPDticD~iaE~~S~~Ls~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv~~ 105 (399)
T PRK04439 26 GIGHPDTICDGIAEAVSRALSRYYLEKFGAILHHNTDKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPVGE 105 (399)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecHHH
Confidence 6799999999999987544 3332 6666666655433 22 357889888753 488888
Q ss_pred HHHHHHHhhCCCC-CCCCCCCCc-eEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHH
Q 044516 68 IVRDTCRNIGFVS-DDVGLDADN-CKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLA 145 (393)
Q Consensus 68 ivR~~i~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lA 145 (393)
|+.++.|+ |=. .--.+|.+. ..|...+.+-|+|+..-..+. . .-.+|-|-....||| ||+ --
T Consensus 106 Ia~~Aak~--~L~~~l~~lD~e~hv~i~~~i~~GS~dL~~vF~r~-~---~vp~ANDTS~gVGyA--------PlS--~~ 169 (399)
T PRK04439 106 IAIEAAKE--YLRENLRNLDPERHVIIDVRLGPGSTDLVDVFERE-S---IVPLANDTSFGVGYA--------PLS--ET 169 (399)
T ss_pred HHHHHHHH--HHHHhCccCCccccEEEEEeeCCCcHHHHHHhCCC-C---CccccccccceeecC--------CCC--HH
Confidence 87665554 111 112355544 567788899999998665431 1 134899999999997 443 23
Q ss_pred HHHHHHHHHHHHc----CCCCccCCCCceeEEEEEecCCCceeeeEEeEEEEe----eecCCCCCh-HHHHHHHHHhhcc
Q 044516 146 TQLGAKLTEVRKN----GTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLIS----TQHDETVTN-DEIAADLKEHVIK 216 (393)
Q Consensus 146 h~l~~~l~~~Rk~----g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS----~QH~~~i~~-~~l~~~i~e~vi~ 216 (393)
-+|+..++..-.+ ..+|+.+.|-|.- -+++. . -+. +.|. ..|-.+++. -+.++.+++.|-.
T Consensus 170 E~~Vl~~E~~lns~~~k~~~P~~GeDiKVM---G~R~g-~---~i~---lTVa~a~v~r~v~~~~~Y~~~k~~v~~~v~~ 239 (399)
T PRK04439 170 ERLVLETERYLNSEEFKKRFPEVGEDIKVM---GLRNG-D---EIT---LTIAMALVDRYVNDVDEYFEVKEEVKEKVED 239 (399)
T ss_pred HHHHHHHHHHhcCcchhhcCCCcCCCeEEE---EEEcC-C---EEE---EEEEhHHhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 4455555544322 4689999999975 23332 1 122 2222 133333331 2455555555443
Q ss_pred cccCCCCCCCCcEEEECCCCCe-------EEcC---CCCCcccCCceEEEecC-CCccccccccCcCCCC-Cccccchhh
Q 044516 217 PVIPEKYLDEKTIFHLNPSGRF-------VIGG---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGAY 284 (393)
Q Consensus 217 ~v~~~~~~~~~t~~~INPtG~F-------viGG---P~~DtGLTGRKiiVDTY-GG~~~HGGGAfSGKDp-tKVDRSaAY 284 (393)
-+ ..+.+.+.+++||..-.- ++=| =+||.|.+||=.=|--- =++-|-+==|=+||.| +-|=.-=..
T Consensus 240 ~a--~~~~~~~v~v~iNt~D~~~~~~~YLTVtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNv 317 (399)
T PRK04439 240 LA--QKYTDRDVEVHINTADDPDEGGVYLTVTGTSAEMGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNV 317 (399)
T ss_pred HH--HhhCCCceEEEEeCCCCCCCCcEEEEeceeehhccCCcccCcCcccCcccCCCCCccccccCCCCCcccchHHHHH
Confidence 32 334555778999996642 2222 26899999994432211 1222334457889998 345556677
Q ss_pred HHHHHHHHHHhh-cccceeEEEEEEEeccC--ceeEEEEeecCCCCCCHHHHHHH
Q 044516 285 IVRQAAKSIVAS-GLARRCIVQVSYAIGVP--EPLSVFVDTYRTGKIPDKEILRI 336 (393)
Q Consensus 285 ~AR~iAKniVaA-GlA~~cevQlsYAIGva--~Pvsi~V~tfGt~~~~~~~i~~~ 336 (393)
+|..||+.|+++ .=.++|.|.|---||.+ +|..+.+...-....+.+++.+-
T Consensus 318 lA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~ 372 (399)
T PRK04439 318 LANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLVASIQVIPEDGVLISDVEKE 372 (399)
T ss_pred HHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeEEEEEEecCCCCChHHHHHH
Confidence 899999999985 22679999998899987 79888887763333443333333
No 13
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=97.96 E-value=0.00065 Score=69.28 Aligned_cols=301 Identities=24% Similarity=0.284 Sum_probs=169.7
Q ss_pred cCCCCChhhhhhHHHHHHHHH----hhc---------CCCCcEEEEE--------eeecCeEEEEEEEeec---eeccHH
Q 044516 11 VNEGHPDKLCDQISDAILDAC----LEQ---------DPDSKVACET--------CTKTNLVMVFGEITTK---ANVNYE 66 (393)
Q Consensus 11 V~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~--------~v~~~~v~i~GEitt~---a~vd~~ 66 (393)
=+-||||-|||-|+.+|=-++ |+. |+---||-+. ++..=.|++.|.-|.. ..+++.
T Consensus 25 KGlGHPDsiaDgiAE~vsr~Ls~~YlerfG~IlHHN~Dk~~ivgG~s~p~FGGGevi~PIyIll~GRAt~~~~g~~ip~~ 104 (400)
T COG1812 25 KGLGHPDSIADGIAEAVSRALSKYYLERFGVILHHNTDKVQIVGGQSAPKFGGGEVIEPIYILLSGRATKEVEGVEIPVG 104 (400)
T ss_pred cCCCCChhHHHHHHHHHHHHHHHHHHHHhCceeccccceeEEEcccccccCCCcceeeeEEEEEecceeeeecCeeccch
Confidence 367999999999988875543 222 2211222111 1222235667776543 346777
Q ss_pred HHHHHHHHhhCCCC-CCCCCCCCce-EEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHH
Q 044516 67 KIVRDTCRNIGFVS-DDVGLDADNC-KVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVL 144 (393)
Q Consensus 67 ~ivR~~i~~IGY~~-~~~gfd~~~~-~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~l 144 (393)
.|+-++-|+ |=. .---+|.+++ .+-..|.+-|.|+..--.+..+ .--.|-|...+.||| ||+.
T Consensus 105 ~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~~---~VplANDTSfgVG~A--------PLs~-- 169 (400)
T COG1812 105 SIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAKE---EVPLANDTSFGVGFA--------PLSE-- 169 (400)
T ss_pred HHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhccc---CCcccccccceeccC--------CCcH--
Confidence 765555444 211 1123566644 5666788999998765543211 235899999999997 4433
Q ss_pred HHHHHHHHHHHH----HcCCCCccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHHhhccccc
Q 044516 145 ATQLGAKLTEVR----KNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTN-DEIAADLKEHVIKPVI 219 (393)
Q Consensus 145 Ah~l~~~l~~~R----k~g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~-~~l~~~i~e~vi~~v~ 219 (393)
..+|+...+..- -...+|..+.|-|.-. ++ +++. --.+|.+-+||-. -++++. -++++.+++.|.+-.
T Consensus 170 tErlV~etEr~lns~~~k~~~P~vGeDIKVMg-lR--~~~~--i~LTIa~a~V~~~-v~~~~~Y~~~ke~v~~~VedlA- 242 (400)
T COG1812 170 TERLVLETERYLNSPEFKKKLPAVGEDIKVMG-LR--EGDE--ISLTIAAALVDKY-VEDIDEYIEVKEEVRKHVEDLA- 242 (400)
T ss_pred HHHHHHHHHHHhcChhhcccCCCcCCceEEEE-Ee--cCCe--EEEEEehHHHHHh-hcCHHHHHHHHHHHHHHHHHHH-
Confidence 344544443332 2356899999999864 33 2212 2245555555533 444432 245555555544321
Q ss_pred CCCCCCCCcEEEECCCCCeEEc-------C---CCCCcccCCceEEEecC-CCccccccccCcCCCCC-ccccchhhHHH
Q 044516 220 PEKYLDEKTIFHLNPSGRFVIG-------G---PHGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDPT-KVDRSGAYIVR 287 (393)
Q Consensus 220 ~~~~~~~~t~~~INPtG~FviG-------G---P~~DtGLTGRKiiVDTY-GG~~~HGGGAfSGKDpt-KVDRSaAY~AR 287 (393)
.+.-+.+.+.+||..-...-| | -+||.|.+||=.=|--- =.+-+-.==|-|||.|. -|=.-=..+|-
T Consensus 243 -~~it~~~v~v~iNtaD~~e~~~~YlTvTGTSaE~GDdGsVGRGNR~nGLITp~RpmSmEAaaGKNPvnHVGKiYN~La~ 321 (400)
T COG1812 243 -SEITDREVEVYINTADDPERGSVYLTVTGTSAEQGDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVLAN 321 (400)
T ss_pred -hhhhccceEEEEecccccccCeEEEEeccchhhhCCCcccccccccccccCCCCCcccccccCCCchhhhHHHHHHHHH
Confidence 222234456777765443322 2 47899999995422211 12223344588999995 35555556788
Q ss_pred HHHHHHHhhc-ccceeEEEEEEEeccC--ce--eEEEEeecCCCCCCHHHHHHH
Q 044516 288 QAAKSIVASG-LARRCIVQVSYAIGVP--EP--LSVFVDTYRTGKIPDKEILRI 336 (393)
Q Consensus 288 ~iAKniVaAG-lA~~cevQlsYAIGva--~P--vsi~V~tfGt~~~~~~~i~~~ 336 (393)
.||+.|+.+= =.++|.|+|-=-||.+ +| +++.|-+ .+...-.++..-
T Consensus 322 ~iA~~I~~ev~~v~evyv~ilsqIGkPId~P~~~~vqvi~--~~~~~~~e~~~e 373 (400)
T COG1812 322 QIANEIVEEVPGVEEVYVRILSQIGKPIDEPKVASVQVIT--KGGEDVKEVENE 373 (400)
T ss_pred HHHHHHHHhcCCcceEEEehhhhcCCcCCCCceEEEEEEe--cCceeHHHHHHH
Confidence 8888888663 2688989888788864 45 4555555 333343444333
No 14
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=58.85 E-value=73 Score=31.05 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEee
Q 044516 281 SGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDT 322 (393)
Q Consensus 281 SaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~t 322 (393)
++.|..||+-+-.-|+++|+++++. +|...|+.+.-+-
T Consensus 204 ~~~y~l~YL~~~~Ka~~ls~~V~l~----~~~~~Pl~l~y~i 241 (259)
T TIGR00590 204 TLTFAIKYLNLFTKATPLSDRVTLS----MSNDVPLVVEYKI 241 (259)
T ss_pred eeeeeHHHHHHhhhhccCCCeEEEE----EcCCCCEEEEEEe
Confidence 5789999998877889999987765 6789999998873
No 15
>PRK11023 outer membrane lipoprotein; Provisional
Probab=54.90 E-value=22 Score=33.21 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=33.6
Q ss_pred hhhhhh-HHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEee
Q 044516 17 DKLCDQ-ISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITT 59 (393)
Q Consensus 17 DKicDq-ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt 59 (393)
+...|. |+..|-.++|..+.-..-.+++-+.+|.|++.|+++.
T Consensus 121 ~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 121 TASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred cccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH
Confidence 445554 7778888888877666667888888999999999964
No 16
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=52.21 E-value=20 Score=33.15 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=38.4
Q ss_pred eEEEEEEEeccCceeEEEEeecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCC
Q 044516 302 CIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRE 374 (393)
Q Consensus 302 cevQlsYAIGva~Pvsi~V~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~ 374 (393)
|.+|..| +++.|-.+.| -++++..++++..|+..+ +- -...+.+-||||+.
T Consensus 3 ~~~~~~~-------i~~rv~iHaT--ED~~kV~eAL~~~~p~~~----------~~---e~ev~~aeGhyGNp 53 (149)
T COG1325 3 GMMQSHY-------IEIRVIIHAT--EDEEKVLEALENFFPEAI----------DV---EIEVTEAEGHYGNP 53 (149)
T ss_pred Cccccce-------EEEEEEEEcc--CCHHHHHHHHHHhcCccc----------cc---ceEEEEeecccCCe
Confidence 5667666 4566677777 688899999999998876 11 35678889999984
No 17
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=48.41 E-value=32 Score=30.83 Aligned_cols=40 Identities=13% Similarity=0.151 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeec
Q 044516 20 CDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60 (393)
Q Consensus 20 cDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~ 60 (393)
..+|+|+|+.++-++...+.- +.+-+.+|.|.+.|.+.+.
T Consensus 24 ~~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 24 NEDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred hHHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 489999999998888766554 6788899999999999874
No 18
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=42.55 E-value=24 Score=32.39 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=27.0
Q ss_pred cccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCc
Q 044516 278 VDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPE 314 (393)
Q Consensus 278 VDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~ 314 (393)
++=++==+|||||.-++..||+.+....+.+-+|..+
T Consensus 77 ~EgTSDKYaR~I~~wL~k~glv~~~~k~vt~~~~~~~ 113 (142)
T PF02980_consen 77 WEGTSDKYARMICGWLKKVGLVEQKTKKVTRTIGGRK 113 (142)
T ss_dssp ---HHHHHHHHHHHHHHHTTSEEE--EEEE-BTTBTT
T ss_pred cccchHHHHHHHHHHHHHhchheecceEEEeeccCcc
Confidence 3456667899999999999999999999888777654
No 19
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=41.57 E-value=7.5 Score=30.11 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=26.4
Q ss_pred cCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHH
Q 044516 98 QQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSH 142 (393)
Q Consensus 98 ~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 142 (393)
+.++|+-.-||.- ..---|+++|||.+-||-++=|-++|
T Consensus 11 ~~~~dlYKvVDfL------NktLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDFL------NKTLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHHH------hhhhhhccEEEEEeecCcCCEEEEEE
Confidence 4567777777631 11344899999999987777675544
No 20
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=38.57 E-value=89 Score=28.40 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=49.0
Q ss_pred EEEEEEEeeceeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe---eccCChhhhccccCCCCCCCCCCCCCcce---
Q 044516 51 VMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVY---IEQQSPDIAQGVHGHLSKRPEEIGAGDQG--- 124 (393)
Q Consensus 51 v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~---i~~QS~dIa~gV~~~~~~~~~~~GAGDQG--- 124 (393)
|+..|.+|-..+--.+.++|+.|++.++.+....-+.+|+..++. |.-.|||=.+-+... ...+|--==||
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~k---~f~dISsC~qg~~~ 82 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLEK---NFKDISSCSQGIKH 82 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEec---CccccchhhcCCCC
Confidence 566788876555566889999999999998777777777544332 222344443333211 11111111111
Q ss_pred -eeeeeecCCCC
Q 044516 125 -HMFGYATDETP 135 (393)
Q Consensus 125 -imfGYA~~ET~ 135 (393)
=-|||=|.||.
T Consensus 83 ~dhFgFIcrEs~ 94 (129)
T cd01269 83 VDHFGFICRESP 94 (129)
T ss_pred cceEEEEeccCC
Confidence 14999999987
No 21
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=35.89 E-value=44 Score=31.77 Aligned_cols=42 Identities=31% Similarity=0.387 Sum_probs=33.2
Q ss_pred hcCCCCcEEEEEeeecCe-------EEEEEEEeeceeccHHHHHHHHHHh
Q 044516 33 EQDPDSKVACETCTKTNL-------VMVFGEITTKANVNYEKIVRDTCRN 75 (393)
Q Consensus 33 ~~Dp~arVA~E~~v~~~~-------v~i~GEitt~a~vd~~~ivR~~i~~ 75 (393)
--||.|+||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 17 vGdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 17 VGDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred ECCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 359999999999988655 4566766565 77899999999765
No 22
>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]
Probab=32.02 E-value=16 Score=33.45 Aligned_cols=12 Identities=50% Similarity=0.584 Sum_probs=11.1
Q ss_pred cCCceEEEecCC
Q 044516 249 LTGRKIIIDTYG 260 (393)
Q Consensus 249 LTGRKiiVDTYG 260 (393)
+||||+.+|||-
T Consensus 95 vTGkk~~~~ty~ 106 (150)
T KOG3447|consen 95 VTGKKCAGDTYL 106 (150)
T ss_pred CcCccccCcchh
Confidence 799999999995
No 23
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=31.40 E-value=1.3e+02 Score=28.02 Aligned_cols=81 Identities=20% Similarity=0.315 Sum_probs=59.7
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
++|.+||-|++-...+++++|...+..---.| -+|. .+-++...++|=.+|++++=|
T Consensus 2 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tG------------------- 62 (174)
T cd04518 2 LKIENIVASVDLGQELDLEKVAAELPNAEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCeecHHHHHhhCCCcEECCCcCcEEEEEccCCcEEEEEECCCeEEEEc-------------------
Confidence 47899999999999999999987655533333 1222 123467889999999999755
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhccc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA 299 (393)
.|--..|..+++.++|-|-..|.-
T Consensus 63 --------------aks~~~a~~a~~~~~~~L~~~g~~ 86 (174)
T cd04518 63 --------------AKSVEDLHRAVKEIIKKLKDYGIK 86 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHhcCCC
Confidence 455567778889999999888854
No 24
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=30.92 E-value=16 Score=37.50 Aligned_cols=50 Identities=34% Similarity=0.496 Sum_probs=33.1
Q ss_pred EEecCCCcc----ccccccCcCCCCCccccchhhHHHHH----HHHHHhhcccceeEEEEEEEeccCceeEEE
Q 044516 255 IIDTYGGWG----AHGGGAFSGKDPTKVDRSGAYIVRQA----AKSIVASGLARRCIVQVSYAIGVPEPLSVF 319 (393)
Q Consensus 255 iVDTYGG~~----~HGGGAfSGKDptKVDRSaAY~AR~i----AKniVaAGlA~~cevQlsYAIGva~Pvsi~ 319 (393)
|||-|||.+ --||||. |--.||+--.. -|.++-. .--+|--|+..|.++.
T Consensus 185 IVDGmgGttgf~gylg~g~M--------D~ElAYaLa~~~~~fsK~~lf~-------gGa~~i~gv~sp~ef~ 242 (374)
T COG2441 185 IVDGMGGTTGFTGYLGGGAM--------DGELAYALANYLERFSKSLLFE-------GGAAYIAGVDSPEEFV 242 (374)
T ss_pred EEeccCCccCcccccccccc--------cHHHHHHHHHhhhhccHhheec-------ccccccccCCCHHHHH
Confidence 788888854 5567776 44688876533 3666633 3446878888887653
No 25
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=29.83 E-value=66 Score=26.12 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=39.6
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhc-ccc-cCC---CCCCCCcEEEECCCCCeEEcC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVI-KPV-IPE---KYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi-~~v-~~~---~~~~~~t~~~INPtG~FviGG 242 (393)
.+|.+||-|..-.-++++++|...+ +.+- +|- .|. .+-+++..++|=+||++++-|
T Consensus 4 ~~i~NIva~~~l~~~idL~~la~~~-~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itG 64 (86)
T PF00352_consen 4 FKIVNIVASFDLPFEIDLEELAEEL-ENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITG 64 (86)
T ss_dssp EEEEEEEEEEE-SSEB-HHHHHHHS-TTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEE
T ss_pred cEEEEEEEEEECCCccCHHHHHhhc-cCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEe
Confidence 6899999999999999999998877 4432 221 221 123467889999999999766
No 26
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=29.58 E-value=62 Score=33.02 Aligned_cols=85 Identities=21% Similarity=0.320 Sum_probs=57.0
Q ss_pred ChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCCCCCCCCceEEEEe
Q 044516 16 PDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVY 95 (393)
Q Consensus 16 PDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~ 95 (393)
-|++.|-+.+.||-+++.+..-..|.- ..-+|-++-.++.|..--.++-.-||.++++.||+-+--- .++-.+
T Consensus 110 tdd~~~~~~~til~ay~~~~~~d~v~~--v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T--~dsw~~--- 182 (305)
T COG5309 110 TDDIHDAVEKTILSAYLPYNGWDDVTT--VTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTT--VDSWNV--- 182 (305)
T ss_pred ccchhhhHHHHHHHHHhccCCCCceEE--EEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceee--ccccee---
Confidence 378889999999999999977665542 2223444456667766566777779999999999976211 111122
Q ss_pred eccCChhhhcccc
Q 044516 96 IEQQSPDIAQGVH 108 (393)
Q Consensus 96 i~~QS~dIa~gV~ 108 (393)
+.. .||+.+..|
T Consensus 183 ~~~-np~l~~~SD 194 (305)
T COG5309 183 VIN-NPELCQASD 194 (305)
T ss_pred eeC-ChHHhhhhh
Confidence 222 788888765
No 27
>PRK10568 periplasmic protein; Provisional
Probab=29.40 E-value=99 Score=29.17 Aligned_cols=52 Identities=13% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhC
Q 044516 23 ISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIG 77 (393)
Q Consensus 23 ISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IG 77 (393)
|+..|-.+++..+.-..-.+.+-+.+|.|.+.|++.+.+. ...+.++.+++-
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~~~---~~~a~~ia~~v~ 112 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQAQ---AEEAVKVAKGVE 112 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCHHH---HHHHHHHHHhCC
Confidence 4445555555433233345777888999999999987532 223444444443
No 28
>PRK00394 transcription factor; Reviewed
Probab=29.32 E-value=1.7e+02 Score=27.36 Aligned_cols=81 Identities=21% Similarity=0.305 Sum_probs=56.5
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
++|.+||-|++-...+++++|...+..---.| -+|. .+-+++..++|=.+|++++=|
T Consensus 1 i~i~NvVas~~l~~~ldL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG------------------- 61 (179)
T PRK00394 1 IKIENIVASTDLGQELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG------------------- 61 (179)
T ss_pred CEEEEEEEEEEcCCCcCHHHHHhhCCCceeCcccCceEEEEecCCceEEEEEcCCcEEEEc-------------------
Confidence 36889999999999999999987654322222 1222 123567889999999999744
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhccc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA 299 (393)
.|--..|.-+++.+++.|-..|.-
T Consensus 62 --------------a~S~~~a~~a~~~~~~~l~~~g~~ 85 (179)
T PRK00394 62 --------------AKSVEDLHEAVKIIIKKLKELGIK 85 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 233346677788888888777754
No 29
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=27.14 E-value=49 Score=32.01 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHH
Q 044516 134 TPEFMPLSHVLATQLGAKLTEV 155 (393)
Q Consensus 134 T~~~MPl~i~lAh~l~~~l~~~ 155 (393)
.+--+|.|+.+||+|++|....
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4556999999999999998653
No 30
>PRK11023 outer membrane lipoprotein; Provisional
Probab=26.46 E-value=1.1e+02 Score=28.63 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.6
Q ss_pred hhhhh-HHHHHHHHHhhcCCCCc--EEEEEeeecCeEEEEEEEeec
Q 044516 18 KLCDQ-ISDAILDACLEQDPDSK--VACETCTKTNLVMVFGEITTK 60 (393)
Q Consensus 18 KicDq-ISDaILDa~L~~Dp~ar--VA~E~~v~~~~v~i~GEitt~ 60 (393)
++-|+ |+-.|..+ |.+||.-+ -.+.+-+.+|.|.+.|++.+.
T Consensus 44 ~~dD~~i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 44 QVDDGTLELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred eehhHHHHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 44444 44444454 45577554 468889999999999999885
No 31
>PRK14053 methyltransferase; Provisional
Probab=25.90 E-value=85 Score=30.26 Aligned_cols=43 Identities=26% Similarity=0.395 Sum_probs=34.3
Q ss_pred hhcCCCCcEEEEEeeecCe----EEEEEEEeeceeccHHHHHHHHHHh
Q 044516 32 LEQDPDSKVACETCTKTNL----VMVFGEITTKANVNYEKIVRDTCRN 75 (393)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~----v~i~GEitt~a~vd~~~ivR~~i~~ 75 (393)
.--||+|+||+=||.++-. .-|.|-..|. ++=+++++++++.+
T Consensus 16 ~vG~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 16 TVGNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred EeCCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 3458999999999998754 5677776665 78899999999765
No 32
>PRK04964 hypothetical protein; Provisional
Probab=23.79 E-value=65 Score=26.09 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=17.6
Q ss_pred CCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHH
Q 044516 117 EIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAK 151 (393)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~ 151 (393)
+||.|||| |+|-+|..|-|-...
T Consensus 14 ~IgSGd~g------------YiP~Ai~ca~k~L~~ 36 (66)
T PRK04964 14 EIGSGDLG------------YVPDALGCVLKALNE 36 (66)
T ss_pred HhcCCccc------------cCcHHHHHHHHHHHH
Confidence 68999998 589999887654433
No 33
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=23.78 E-value=85 Score=30.95 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=33.7
Q ss_pred hhcCCCCcEEEEEeeecCe--------EEEEEEEeeceeccHHHHHHHHHHh
Q 044516 32 LEQDPDSKVACETCTKTNL--------VMVFGEITTKANVNYEKIVRDTCRN 75 (393)
Q Consensus 32 L~~Dp~arVA~E~~v~~~~--------v~i~GEitt~a~vd~~~ivR~~i~~ 75 (393)
.--||+|.||+=||.++.. .-|.|-..|. ++=++++++++|.+
T Consensus 19 ~vGd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 19 VVGDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred EeCCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 3459999999999998765 3456766565 78899999999765
No 34
>PF07918 CAP160: CAP160 repeat; InterPro: IPR012418 This region featured in this family is repeated in spinach cold acclimation protein CAP160 (O50054 from SWISSPROT) CAP160 is induced during periods of drought stress; its precise function is unknown but it has been implicated in the stabilisation of membranes, cytoskeletal elements, and ribosomes. By acting as a compatible solute, it may reduce the toxic effects of cellular solutes that accumulate at high concentration []. Other members of this family are also induced by water stress, abscisic acid, and/or low temperature, such as desiccation-responsive protein 29B (Q04980 from SWISSPROT) and CDet11-24 protein (O23764 from SWISSPROT).
Probab=23.75 E-value=40 Score=22.94 Aligned_cols=10 Identities=60% Similarity=0.720 Sum_probs=8.3
Q ss_pred HHHHHHhhcc
Q 044516 289 AAKSIVASGL 298 (393)
Q Consensus 289 iAKniVaAGl 298 (393)
.|||+||+.|
T Consensus 14 ~AknvvaSKL 23 (27)
T PF07918_consen 14 SAKNVVASKL 23 (27)
T ss_pred HHHHHHHHhc
Confidence 4899999865
No 35
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=23.08 E-value=4.1e+02 Score=28.44 Aligned_cols=98 Identities=17% Similarity=0.236 Sum_probs=62.1
Q ss_pred CcEEEEEeeecCeEE--EEEEEeeceeccHHH---HHHHHHHhhCCCCCC--CCCCCCceEEEEeeccCChhhhccccCC
Q 044516 38 SKVACETCTKTNLVM--VFGEITTKANVNYEK---IVRDTCRNIGFVSDD--VGLDADNCKVLVYIEQQSPDIAQGVHGH 110 (393)
Q Consensus 38 arVA~E~~v~~~~v~--i~GEitt~a~vd~~~---ivR~~i~~IGY~~~~--~gfd~~~~~v~~~i~~QS~dIa~gV~~~ 110 (393)
..+-|++-.++|.++ +-..-..+..+|.++ ++++-|+++||.+.. +--.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 457899999988766 333322346777765 789999999998743 112234456677777764 44210
Q ss_pred CCCCCCCCCCCcceeeeee-----ecCCCCCCCCcH
Q 044516 111 LSKRPEEIGAGDQGHMFGY-----ATDETPEFMPLS 141 (393)
Q Consensus 111 ~~~~~~~~GAGDQGimfGY-----A~~ET~~~MPl~ 141 (393)
.+...---|-|.|=+.|| -+++++.=+|-|
T Consensus 337 -pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 -PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred -CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 011111248899999999 777776556766
No 36
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=22.03 E-value=75 Score=25.72 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=18.0
Q ss_pred CCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHH
Q 044516 117 EIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKL 152 (393)
Q Consensus 117 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l 152 (393)
+||.|||| |+|-+|..|-+-...+
T Consensus 14 ~IgSGd~g------------YiP~Ai~calk~Ln~i 37 (66)
T PF06786_consen 14 QIGSGDQG------------YIPDAIGCALKTLNDI 37 (66)
T ss_pred HhcCCccc------------cCcHHHHHHHHHHHHH
Confidence 68999997 5899998876544433
No 37
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=21.61 E-value=3.7e+02 Score=24.92 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=56.2
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
++|.+||-|..-.-.+++++|...+..--=+| -+|. .+-+++...+|=.+|++++=|
T Consensus 2 ~~i~NvVas~~l~~~idL~~la~~~~n~~YePe~fpgli~R~~~P~~t~lIf~sGKivitG------------------- 62 (174)
T cd00652 2 PKIQNIVATVNLGCELDLRKIALAARNAEYNPKRFPGVIMRLREPKTTALIFSSGKMVITG------------------- 62 (174)
T ss_pred cEEEEEEEEEEcCCccCHHHHHhhCCCcEECCCccceEEEEcCCCcEEEEEECCCEEEEEe-------------------
Confidence 47899999999888999999977554322233 2222 123467788999999999744
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~ 300 (393)
.|=-..+.-+++++++-|-..|...
T Consensus 63 --------------aks~~~~~~a~~~~~~~L~~~g~~~ 87 (174)
T cd00652 63 --------------AKSEEDAKLAARKYARILQKLGFPV 87 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 2334456667888888887777443
No 38
>PRK07308 flavodoxin; Validated
Probab=21.26 E-value=1.7e+02 Score=25.35 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHhhcccceeEEEEE----EEeccCceeEEEEeecCCCCCCHHHHHHHHH
Q 044516 282 GAYIVRQAAKSIVASGLARRCIVQVS----YAIGVPEPLSVFVDTYRTGKIPDKEILRIVK 338 (393)
Q Consensus 282 aAY~AR~iAKniVaAGlA~~cevQls----YAIGva~Pvsi~V~tfGt~~~~~~~i~~~v~ 338 (393)
..-+|+.||+.+...|+.-++ ..++ ..+...+-|-+-.=|+|.+.++++ +...+.
T Consensus 15 Te~iA~~ia~~l~~~g~~~~~-~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~-~~~fl~ 73 (146)
T PRK07308 15 TEEIADIVADKLRELGHDVDV-DECTTVDASDFEDADIAIVATYTYGDGELPDE-IVDFYE 73 (146)
T ss_pred HHHHHHHHHHHHHhCCCceEE-EecccCCHhHhccCCEEEEEeCccCCCCCCHH-HHHHHH
Confidence 345788999988877763221 1111 114455667777778887777754 444444
No 39
>PF02582 DUF155: Uncharacterised ACR, YagE family COG1723; InterPro: IPR003734 This entry describes proteins of unknown function.
Probab=20.95 E-value=24 Score=32.15 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhh
Q 044516 205 EIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAY 284 (393)
Q Consensus 205 ~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY 284 (393)
++-+.++.....|.-+...-.+...|.+.|+. +.+.+.+=+|++.+.
T Consensus 22 ~~l~~l~~~~~~~~~~~~~~~e~~~~~~~~~~--------~~~~i~~d~i~l~~~------------------------- 68 (175)
T PF02582_consen 22 QFLDYLKPFEEEPLSEPEVETEEMNYIYDPNL--------PKSRIQNDIIVLPEL------------------------- 68 (175)
T ss_pred HHHHHHHHHHhCCCccccceeEEEEEEEeCCC--------CCceEECCEEEEccc-------------------------
Confidence 44444554444544332212456688888876 233344457777766
Q ss_pred HHHHHHHHHHhhccccee-----EEEEEEEeccCceeEEEEeecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCC
Q 044516 285 IVRQAAKSIVASGLARRC-----IVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRG 357 (393)
Q Consensus 285 ~AR~iAKniVaAGlA~~c-----evQlsYAIGva~Pvsi~V~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p 357 (393)
+...|-.++.+||.-+ |-++.=-|-..+|+.-.+...|.-.++..+|.+.+-+.|.++=.-+...--|.+|
T Consensus 69 --~~~~~~aiS~~LAqSv~L~~~E~~v~~~l~~~~~i~~~L~~~G~~~~~~k~l~k~~G~l~~~r~~i~l~~~ilD~P 144 (175)
T PF02582_consen 69 --DVLEKLAISHALAQSVKLDFFEEQVDKLLEETEPIPEELAKTGKLPLSRKELLKLIGELFSLRHDINLNSDILDTP 144 (175)
T ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 2333333333333222 1111112334455555566667767888899999988888887766655555666
No 40
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=20.79 E-value=1e+02 Score=30.31 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=30.8
Q ss_pred EEEEEeccCceeEEEEeecCCCCCCHHHHHHHHHHhC
Q 044516 305 QVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENF 341 (393)
Q Consensus 305 QlsYAIGva~Pvsi~V~tfGt~~~~~~~i~~~v~~~F 341 (393)
|--|+||. -|+++-.-++|++|++-.+|.+-++..+
T Consensus 197 ~~~y~IgE-vPitFvdR~~GeSKLg~~eIv~ylk~l~ 232 (238)
T KOG2978|consen 197 QHGYTIGE-VPITFVDRTYGESKLGGKEIVQYLKGLL 232 (238)
T ss_pred ccCceEee-cceEEEeeccccccccHHHHHHHHHHHh
Confidence 44699996 5999999999999999999988877554
No 41
>COG2823 OsmY Predicted periplasmic or secreted lipoprotein [General function prediction only]
Probab=20.76 E-value=1.6e+02 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeec
Q 044516 22 QISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60 (393)
Q Consensus 22 qISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~ 60 (393)
+|...|=+++|..+.---.=+++.+.+|.|++.|.+.|.
T Consensus 131 ~iTt~Vka~Ll~~~~v~s~~IkV~t~~g~V~L~G~V~s~ 169 (196)
T COG2823 131 WITTKVKAALLGDDNVKSSNIKVETENGEVYLSGLVDSQ 169 (196)
T ss_pred HHHHHHHHHhccCCCCCcceEEEEEECCEEEEEEEeCCH
Confidence 344445555566654433348888899999999999764
No 42
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=20.58 E-value=1.1e+02 Score=32.61 Aligned_cols=54 Identities=24% Similarity=0.258 Sum_probs=38.1
Q ss_pred EEEEeecCCCCCCHHHHHHHHHHhCCCC-----------------hHHHHHHhccCCCCchhhhc---ccccccC
Q 044516 317 SVFVDTYRTGKIPDKEILRIVKENFDFR-----------------PGMIAINLDLKRGGNSRFLK---TAAYGHF 371 (393)
Q Consensus 317 si~V~tfGt~~~~~~~i~~~v~~~Fdl~-----------------p~~Ii~~L~L~~p~~~iY~~---ta~yGHF 371 (393)
-|.|||-|-+..+...+.++ ++.|+.. -..|+++|.+-...+.|+.| |.+||||
T Consensus 284 ~ILVDTaGrs~~D~~~i~el-~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~ 357 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEEL-KELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNL 357 (407)
T ss_pred EEEEeCCCCCccCHHHHHHH-HHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHH
Confidence 37899999988888777665 5555555 35678888777776666654 5666664
No 43
>PLN00062 TATA-box-binding protein; Provisional
Probab=20.49 E-value=2.8e+02 Score=26.06 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=55.7
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
++|.+||-|+.-.-.+++++|...+..--=.| .+|. .+-+++..++|=.+|++++=|
T Consensus 2 ~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG------------------- 62 (179)
T PLN00062 2 PTLQNIVSTVNLDCKLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTG------------------- 62 (179)
T ss_pred cEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 46889999999888999999976554322222 2232 123567889999999999755
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhcc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGl 298 (393)
.|--..+..+++.++|-|-..|.
T Consensus 63 --------------aks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 63 --------------AKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23335666778888888877775
No 44
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.14 E-value=3e+02 Score=25.72 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
.+|.+||-|+.-.-.+++++|...+..--=+| .+|. .+-+++..++|=.+|++++=|
T Consensus 2 ~~I~NvVas~~l~~~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG------------------- 62 (174)
T cd04516 2 PKIQNIVATVNLGCKLDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG------------------- 62 (174)
T ss_pred CEEEEEEEEEEcCCeecHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe-------------------
Confidence 46889999999888999999987554422222 2222 123567788999999999744
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhccc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA 299 (393)
.|--.+|..+++.+++-|-..|..
T Consensus 63 --------------aks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 63 --------------AKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCCC
Confidence 233356667788888888777743
No 45
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.01 E-value=5.1e+02 Score=21.64 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred ceeEEEEEEEeccCceeEEEEeecCCCCCCHHHHHHHHHHh-----CCCChHHHHHHhccCC
Q 044516 300 RRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKEN-----FDFRPGMIAINLDLKR 356 (393)
Q Consensus 300 ~~cevQlsYAIGva~Pvsi~V~tfGt~~~~~~~i~~~v~~~-----Fdl~p~~Ii~~L~L~~ 356 (393)
.+..|.+.|--...+|.-|++++-..+.. ...+..+-+-+ .+..|..||++|.=-+
T Consensus 8 g~~yvtv~~d~d~g~p~Evf~~~~~~Gg~-~~~~~ai~rliS~~Lr~G~~~~~ii~~L~gi~ 68 (95)
T PF12637_consen 8 GKLYVTVNFDEDNGRPFEVFINVGKAGGC-SGNLEAIARLISLALRSGVPPEEIIDQLRGIR 68 (95)
T ss_pred cceEEEEEeeCCCCcceEEEEecCcCCCc-hHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Confidence 35567777743446799999998877766 66666666666 8999999999997554
Done!