Query 044516
Match_columns 393
No_of_seqs 153 out of 1144
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:29:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3so4_A Methionine-adenosyltran 100.0 2E-192 7E-197 1419.2 34.7 383 2-389 21-403 (415)
2 3iml_A S-adenosylmethionine sy 100.0 5E-191 2E-195 1405.9 33.6 381 2-390 7-387 (399)
3 3s82_A S-adenosylmethionine sy 100.0 8E-191 3E-195 1408.8 28.2 382 2-390 8-404 (407)
4 2p02_A S-adenosylmethionine sy 100.0 5E-189 2E-193 1392.4 33.7 379 3-388 18-396 (396)
5 1p7l_A S-adenosylmethionine sy 100.0 8E-189 3E-193 1386.2 30.7 376 3-390 2-377 (383)
6 4hpv_A S-adenosylmethionine sy 98.4 1.9E-06 6.4E-11 87.1 12.0 305 12-341 29-389 (407)
7 1mp9_A Tata-binding protein; t 49.8 62 0.0021 29.5 8.4 80 186-298 13-96 (198)
8 2gjh_A Designed protein; oblig 43.7 19 0.00067 26.9 3.3 38 64-101 18-55 (62)
9 1ais_A TBP, protein (tata-bind 39.1 62 0.0021 29.1 6.5 81 185-298 8-92 (182)
10 2z8u_A Tata-box-binding protei 36.8 53 0.0018 29.8 5.7 80 186-298 13-96 (188)
11 3kxy_T EXSE; type-three secret 31.1 31 0.0011 26.1 2.6 21 269-293 17-37 (66)
12 1qys_A TOP7; alpha-beta, novel 28.7 23 0.00078 28.9 1.6 38 64-101 62-99 (106)
13 2w42_A PIWI, putative uncharac 28.6 39 0.0013 33.9 3.7 26 135-160 384-409 (427)
14 3pvv_A Chromosomal replication 27.6 43 0.0015 27.3 3.2 28 324-351 1-28 (101)
15 1ytb_A Protein (tata binding p 21.4 2.4E+02 0.0081 25.2 7.1 81 185-298 4-88 (180)
No 1
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica}
Probab=100.00 E-value=2.2e-192 Score=1419.19 Aligned_cols=383 Identities=61% Similarity=1.005 Sum_probs=365.6
Q ss_pred CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCC
Q 044516 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (393)
.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 21 ~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IGY~~~ 100 (415)
T 3so4_A 21 SRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGYDDT 100 (415)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEG
T ss_pred cceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044516 82 DVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
++|||++||.|+++|++|||||||||+.+ +..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 101 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk~g~l 178 (415)
T 3so4_A 101 NKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGIL 178 (415)
T ss_dssp GGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999963 2235799999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 044516 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 162 ~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (393)
|||||||||||||+|++++|.++|+||+||||||||++++++++|+++|+|+||+||+|++|++++|+||||||||||||
T Consensus 179 ~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGrFViG 258 (415)
T 3so4_A 179 PWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIG 258 (415)
T ss_dssp TTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCCCCSC
T ss_pred CeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCCeEEC
Confidence 99999999999999987667789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEe
Q 044516 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD 321 (393)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~ 321 (393)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 259 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvSi~V~ 338 (415)
T 3so4_A 259 GPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINVN 338 (415)
T ss_dssp TTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEEEE
T ss_pred CCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcC
Q 044516 322 TYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYE 389 (393)
Q Consensus 322 tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~ 389 (393)
||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||++|+|.+-
T Consensus 339 TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~ 403 (415)
T 3so4_A 339 TYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP 403 (415)
T ss_dssp ECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred eCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence 999999999999999999999999999999999999 99999999999999989999999999863
No 2
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=4.9e-191 Score=1405.93 Aligned_cols=381 Identities=55% Similarity=0.897 Sum_probs=353.6
Q ss_pred CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCC
Q 044516 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSD 81 (393)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~ 81 (393)
.+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||+++
T Consensus 7 ~~~lFTSESVseGHPDKicDqISDaILDa~L~~Dp~arVAcEt~~~tg~V~v~GEItt~a~vd~~~ivR~~i~~IGY~~~ 86 (399)
T 3iml_A 7 NDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGYDNT 86 (399)
T ss_dssp CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHTCC--
T ss_pred cCceEeccccCCCCCcHHHHHHhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEecccccCHHHHHHHHHhccCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 044516 82 DVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTC 161 (393)
Q Consensus 82 ~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~ 161 (393)
++|||++||.|+++|++|||||||||+.+. ++.+++|||||||||||||||||+||||||+|||+|++||+++||+|.+
T Consensus 87 ~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~-~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~rl~~~Rk~g~l 165 (399)
T 3iml_A 87 DYGIDYRGCAVLVAYDKQSPDIAQGVDRAH-DNNLDQGAGDQGLMFGYACDETPELMPLPIHLSHRLVERQANLRRDGRL 165 (399)
T ss_dssp -------CCEEEEEEEEECC-------------CTTCCBSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred ccCccCCceEEEEecccCChhHhhhhcccc-cchhhcCcCcceeEEEEecCCccccCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999631 1235799999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEc
Q 044516 162 PWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIG 241 (393)
Q Consensus 162 ~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviG 241 (393)
||||||+||||||+|++ + +|+||+|||||+||++++++++|+++|+|+||+|++|++|++++|+||||||||||||
T Consensus 166 ~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~vip~~~l~~~t~~~INPtGrFViG 241 (399)
T 3iml_A 166 PWLRPDAKSQVTVRYVD--G--KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIG 241 (399)
T ss_dssp TTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCCSC
T ss_pred CeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeC
Confidence 99999999999999974 5 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEe
Q 044516 242 GPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD 321 (393)
Q Consensus 242 GP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~ 321 (393)
||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+||
T Consensus 242 GP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~P~Si~V~ 321 (399)
T 3iml_A 242 GPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVMVN 321 (399)
T ss_dssp GGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCSSCSEEEEE
T ss_pred CCcccccccccceeeecCCcccCCCCccccCCCccccchHHHHHHHHHHHHHHhhcccceeEEEEEEecCcccceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516 322 TYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390 (393)
Q Consensus 322 tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 390 (393)
||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||+||+++.|+
T Consensus 322 tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~v~~lk 387 (399)
T 3iml_A 322 TFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRP---IYEKTAAYGHFGREEPEFSWEAADKALALA 387 (399)
T ss_dssp CTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCCCTTCGGGCCTTHHHHH
T ss_pred eCCCcccCHHHHHHHHHHHcCCCHHHHHHHcCCCCC---chhhhcCcCCCCCCCCCCCccCccHHHHHH
Confidence 999999999999999999999999999999999999 999999999999999899999999988764
No 3
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A
Probab=100.00 E-value=7.8e-191 Score=1408.82 Aligned_cols=382 Identities=54% Similarity=0.869 Sum_probs=356.6
Q ss_pred CcceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeec---eeccHHHHHHHHHHhhCC
Q 044516 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK---ANVNYEKIVRDTCRNIGF 78 (393)
Q Consensus 2 ~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~---a~vd~~~ivR~~i~~IGY 78 (393)
++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+ ++||+++|||++|++|||
T Consensus 8 ~~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~vttg~V~v~GEItt~~~~a~vd~~~ivR~~i~~IGY 87 (407)
T 3s82_A 8 KGRLFTSESVTEGHPDKICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILDIGY 87 (407)
T ss_dssp -CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCHHHHHTHHHHHHHHHHHHTC
T ss_pred CceEEeeccccCCCCcHHHhhhhHHHHHHHHhcCCCCcEEEEEEeccCeEEEEEEEeeCCcccccCHHHHHHHHHHhcCC
Confidence 35899999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeeccCChhhhccccCCCC-------CCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHH
Q 044516 79 VSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLS-------KRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAK 151 (393)
Q Consensus 79 ~~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~-------~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~ 151 (393)
+++++|||++||.|+++|++|||||||||+...+ +..+++|||||||||||||||||+||||||+|||+|++|
T Consensus 88 ~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~~e~r~~~~~~~~~~~GAGDQGiMFGYA~~ET~elMPlpi~lAH~L~~r 167 (407)
T 3s82_A 88 DSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFGYAINDTPERMPLPIALAHRLSRR 167 (407)
T ss_dssp EEGGGTEETTTSEEEEEEEEECC--------------------------CCCEEEEEEEETTSTTSSCHHHHHHHHHHHH
T ss_pred CCcccCcCCCceEEEEecccCChHHHhhhcchhhcccccccchhhhcCCccceeEEEEecCCCcccCchHHHHHHHHHHH
Confidence 9999999999999999999999999999996421 112579999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHH-HHHHHHHhhcccccCC----CCCCC
Q 044516 152 LTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDE-IAADLKEHVIKPVIPE----KYLDE 226 (393)
Q Consensus 152 l~~~Rk~g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~-l~~~i~e~vi~~v~~~----~~~~~ 226 (393)
|+++||+|.+|||||||||||||+|++ + +|+||+||||||||++++++++ |+++|+|+||+||+|+ +|+++
T Consensus 168 la~~Rk~g~l~~LrPD~KtQVTveY~~--~--~P~rv~tvViStQH~~~v~~~~~l~~~i~e~VI~~vip~~~~~~~~~~ 243 (407)
T 3s82_A 168 LTEVRKNGVLPYLRPDGKTQVTIEFED--D--VPVRLDTVVISTQHAADIDLENTLTPDIREKVLNTVLNDLAHDTLDTS 243 (407)
T ss_dssp HHHHHHTSSSTTEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTCCTTTTHHHHHHHHTHHHHHHHHCCSSCBCT
T ss_pred HHHHHHcCCCCeecCCCceEEEEEEEC--C--ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 999999999999999999999999974 5 8999999999999999999999 9999999999999998 88999
Q ss_pred CcEEEECCCCCeEEcCCCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEE
Q 044516 227 KTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQV 306 (393)
Q Consensus 227 ~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQl 306 (393)
+|+||||||||||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+||||||
T Consensus 244 ~t~~~INPtGrFViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQl 323 (407)
T 3s82_A 244 STRLLVNPTGKFVVGGPMGDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQV 323 (407)
T ss_dssp TCEEEESTTCCCCSCTTTTSEEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CeEEEECCCCCeEECCCcccccccCceEEEecCCCcccCCCccccCCCccccchhHHHHHHHHHHHHHHcccccceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCceeEEEEeecCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccC
Q 044516 307 SYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPL 386 (393)
Q Consensus 307 sYAIGva~Pvsi~V~tfGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (393)
|||||+++|+||+||||||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||++++||||+||++
T Consensus 324 sYAIGva~PvSi~V~tfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~dkv 400 (407)
T 3s82_A 324 AYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRP---IYAQTAAYGHFGRTDVELPWEQLNKV 400 (407)
T ss_dssp EECTTCSSCSEEEEECTTCCSSCHHHHHHHHHHHSCCSHHHHHHHTTCSSS---CCGGGSSSCSSSCSSSCCGGGCCTTH
T ss_pred EEecccccceEEEEEeCCCCCCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcCcCCCCCCCCCCCccCCcHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999989999999998
Q ss_pred CcCC
Q 044516 387 KYEK 390 (393)
Q Consensus 387 ~~~~ 390 (393)
+.|+
T Consensus 401 ~~Lk 404 (407)
T 3s82_A 401 DDLK 404 (407)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 4
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=4.6e-189 Score=1392.43 Aligned_cols=379 Identities=66% Similarity=1.086 Sum_probs=368.2
Q ss_pred cceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCC
Q 044516 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++|||++++
T Consensus 18 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 97 (396)
T 2p02_A 18 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSS 97 (396)
T ss_dssp EEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred ceEEeeccccCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044516 83 VGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCP 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||++||.|+++|++|||||||||+... ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus 98 ~gfd~~tc~Vl~~i~~QSpDIaqGV~~~~--~~~e~GAGDQGiMFGYAt~ET~elMPlpi~lAh~L~~rla~~Rk~g~l~ 175 (396)
T 2p02_A 98 KGFDYKTCNVLVALEQQSPDIAQGVHLDR--NEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLP 175 (396)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHTTTC--CGGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCCCCCceEEEEecccCChhhhhcccccc--cccccCCCCcceEEEEeCCCCcccCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999531 1136999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 044516 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
||||||||||||+|+++++.++|+||+|||||+||++++++++||++|+|+||+||+|++|++++|+|||||||||||||
T Consensus 176 ~lrPD~KtQVTveY~~~~~~~~P~rv~tvviS~QH~~~v~~~~lr~~i~e~vi~~v~p~~~ld~~t~~~INPtGrFviGG 255 (396)
T 2p02_A 176 WLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255 (396)
T ss_dssp TEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCCSCG
T ss_pred ccCCCcceEEEEEEEcCCCCcCceEEeEEEEeecCCCCCCHHHHHHHHHHHHHHHhcChhhcCCCeEEEECCCCCcccCC
Confidence 99999999999999854466789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEee
Q 044516 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDT 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~t 322 (393)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 256 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 335 (396)
T 2p02_A 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFH 335 (396)
T ss_dssp GGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEEEEC
T ss_pred CcccccccCceEEEEcCCCccCCCCcccCCCCccccchhhHHHHHHHHHHHHhhccCCeeEEEEEeecCcccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCc
Q 044516 323 YRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKY 388 (393)
Q Consensus 323 fGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~ 388 (393)
|||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|++++
T Consensus 336 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~ 396 (396)
T 2p02_A 336 YGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY 396 (396)
T ss_dssp TTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHhcCCCCC---cchhhccccCcCCC--CCCcccccccCC
Confidence 99999999999999999999999999999999999 99999999999997 699999999864
No 5
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=8.1e-189 Score=1386.17 Aligned_cols=376 Identities=57% Similarity=0.920 Sum_probs=367.3
Q ss_pred cceeeccccCCCCChhhhhhHHHHHHHHHhhcCCCCcEEEEEeeecCeEEEEEEEeeceeccHHHHHHHHHHhhCCCCCC
Q 044516 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIGFVSDD 82 (393)
Q Consensus 3 ~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 82 (393)
+||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||++++
T Consensus 2 ~~lFTSESVseGHPDKicDqISDAILDa~L~~Dp~arVAcEt~v~tg~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~ 81 (383)
T 1p7l_A 2 KHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSD 81 (383)
T ss_dssp CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEECSCCCCHHHHHHHHHHHHTCEEGG
T ss_pred CceeeccccCCCCCcHHHHHHHHHHHHHHHhhCCCCcEEEEEEeecCcEEEEEEEeccccCCHHHHHHHHHHHhCCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 044516 83 VGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCP 162 (393)
Q Consensus 83 ~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~g~~~ 162 (393)
+|||++||.|+++|++|||||||||+... .+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|
T Consensus 82 ~gfd~~tc~v~~~i~~QSpdIa~GV~~~~---~~e~GAGDQGiMFGYA~~ET~e~MPlpi~lAh~L~~rl~~~Rk~g~~~ 158 (383)
T 1p7l_A 82 MGFDANSCAVLSAIGKQSPDINQGVDRAD---PLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLP 158 (383)
T ss_dssp GTEETTTSEEEEEEECCCHHHHHHHSCSS---TTTCCCSSCEEEEEEEETTSTTSCCHHHHHHHHHHHHHHHHHHTTSST
T ss_pred cCcCCCceEEEEecccCChHHhhhcCccc---ccccccCCCceeeEEecCCCcccCchHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999532 236999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEEcC
Q 044516 163 WLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 242 (393)
Q Consensus 163 ~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGG 242 (393)
||||||||||||+|++ + +|+||+|||||+||++++++++||++|+|+||+||+|++|++++|+|||||||||||||
T Consensus 159 ~lrPD~KtQVtveY~~--~--~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~v~p~~~ld~~t~~~iNPtGrFviGG 234 (383)
T 1p7l_A 159 WLRPDAKSQVTFQYDD--G--KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGG 234 (383)
T ss_dssp TEEEEEEEEEEEEEET--T--EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTSCCCSCH
T ss_pred ccCCCccceEEEEEeC--C--ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHhcCccccCCCeEEEECCCCCcccCC
Confidence 9999999999999984 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCceEEEecCCCccccccccCcCCCCCccccchhhHHHHHHHHHHhhcccceeEEEEEEEeccCceeEEEEee
Q 044516 243 PHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDT 322 (393)
Q Consensus 243 P~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGlA~~cevQlsYAIGva~Pvsi~V~t 322 (393)
|+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+|||
T Consensus 235 P~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVaAGLA~rc~VQlsYAIGva~PvSi~Vdt 314 (383)
T 1p7l_A 235 PMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVET 314 (383)
T ss_dssp HHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEECTTCCSCSEEEEEC
T ss_pred ccccccccCceEEEEccCCccCCCCcccCCCCCcccchhhhHHHHHHHHHHhhhccccceeeeeeeecccccccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHhCCCChHHHHHHhccCCCCchhhhcccccccCCCCCCCCCccccccCCcCC
Q 044516 323 YRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEK 390 (393)
Q Consensus 323 fGt~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~p~~~iY~~ta~yGHFGr~~~~fpWE~~d~~~~~~ 390 (393)
|||+++++++|.++|+++|||||++||++|+|+|| ||++||+||||||+ +||||++|+++.|+
T Consensus 315 fGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGr~--~fpWE~~d~~~~lk 377 (383)
T 1p7l_A 315 FGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHP---IYKETAAYGHFGRE--HFPWEKTDKAQLLR 377 (383)
T ss_dssp TTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSS---CCGGGGSSCSSSCT--TSTTTCCSHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHcCCCHHHHHHhcCCCCC---chhhhccccCcCCC--CCCccccchHHHHH
Confidence 99999999999999999999999999999999999 99999999999997 69999999988764
No 6
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2}
Probab=98.38 E-value=1.9e-06 Score=87.07 Aligned_cols=305 Identities=21% Similarity=0.262 Sum_probs=175.1
Q ss_pred CCCCChhhhhhHHHHHHHHH----hhc---------CCCCcEEEEEee--------ecCeEEEEEEEeece---e----c
Q 044516 12 NEGHPDKLCDQISDAILDAC----LEQ---------DPDSKVACETCT--------KTNLVMVFGEITTKA---N----V 63 (393)
Q Consensus 12 ~eGHPDKicDqISDaILDa~----L~~---------Dp~arVA~E~~v--------~~~~v~i~GEitt~a---~----v 63 (393)
+-||||-|||-|++++=-++ |++ |+---||-+..- ..=.|+++|..|+.. . +
T Consensus 29 GiGHPDsIcDgiaE~vS~aLs~~Yl~~fG~ILHHN~DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAT~~~~g~~~~~~i 108 (407)
T 4hpv_A 29 GLGHPDYIADAVAEEASRKLSLYYLKKYGVILHHNLDKTLVVGGQATPRFKGGDIIQPIYIIVAGRATTEVKTESGIDQI 108 (407)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEEEECCEEEEETTEEEEEECEEEEEEEEECCEEECSSCEEEC
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEccEeeccCCCceeeeeEEEEEecceEEEECCccccccc
Confidence 67999999999999875443 332 444444443332 233578888887642 3 7
Q ss_pred cHHHHHHHHHHhhCCCC-CCCCCCCCc-eEEEEeeccCChhhhccccCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcH
Q 044516 64 NYEKIVRDTCRNIGFVS-DDVGLDADN-CKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQGHMFGYATDETPEFMPLS 141 (393)
Q Consensus 64 d~~~ivR~~i~~IGY~~-~~~gfd~~~-~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~ 141 (393)
++.+|+.++.|+ |=. .--.+|.++ ..|...|.+-|+|+..-..+. ..--.|-|.....||| ||+
T Consensus 109 Pv~~Ia~~AAk~--~l~~~l~~lD~e~~v~i~~~i~~GS~dL~~vf~r~----~~vp~ANDTS~gVGyA--------PlS 174 (407)
T 4hpv_A 109 PVGTIIIESVKE--WIRNNFRYLDAERHVIVDYKIGKGSSDLVGIFEAS----KRVPLSNDTSFGVGFA--------PLT 174 (407)
T ss_dssp CHHHHHHHHHHH--HHHHHCSSCCTTTSEEEEEEEECCEEECC----------CCCCBCSSCCEEEEEE--------SCC
T ss_pred CHHHHHHHHHHH--HHHHhcccCCCCCcEEEEeeeCCCChhHHHHhcCC----CCCccccccCceeccC--------CCC
Confidence 888876544443 100 011245543 567778999999988765432 1134799999999997 443
Q ss_pred HHHHHHHHHHHHHHHH----cCCCCccCCCCceeEEEEEecCCCceeeeEEeEEEEeeecCCCCCh-HHHHHHHHHhhcc
Q 044516 142 HVLATQLGAKLTEVRK----NGTCPWLRPDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTN-DEIAADLKEHVIK 216 (393)
Q Consensus 142 i~lAh~l~~~l~~~Rk----~g~~~~l~pD~KsQVtv~Y~~~~~~~~p~~i~tiviS~QH~~~i~~-~~l~~~i~e~vi~ 216 (393)
- .-+|+..++..-. ...+|+.+.|-|.-- + ++. ..+ -+.|-.-.|+ .|-.+.+. -+.++.+++.|-.
T Consensus 175 ~--~E~~Vl~~E~~Lns~~~k~~~P~~GeDIKVMG-~--R~g-~~i-~LTvA~a~v~-r~v~~~~~Y~~~K~~v~~~v~~ 246 (407)
T 4hpv_A 175 K--LEKLVYETERHLNSKQFKAKLPEVGEDIKVMG-L--RRG-NEV-DLTIAMATIS-ELIEDVNHYINVKEQVRNQILD 246 (407)
T ss_dssp H--HHHHHHHHHHHHHSHHHHHHCTTEEEEEEEEE-E--EET-TEE-EEEEEEEEEG-GGCCSHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHhcchhhhhhCcccCCceEEEE-E--eeC-CeE-EEEEEhhhhh-hhhCCHHHHHHHHHHHHHHHHH
Confidence 2 3344444443321 135899999999753 3 322 211 1222222222 33333321 2445555544333
Q ss_pred cccCCCCCCC-CcEEEECCCCC-------eEEcCC---CCCcccCCceEEEecC-CCccccccccCcCCCC-Cccccchh
Q 044516 217 PVIPEKYLDE-KTIFHLNPSGR-------FVIGGP---HGDAGLTGRKIIIDTY-GGWGAHGGGAFSGKDP-TKVDRSGA 283 (393)
Q Consensus 217 ~v~~~~~~~~-~t~~~INPtG~-------FviGGP---~~DtGLTGRKiiVDTY-GG~~~HGGGAfSGKDp-tKVDRSaA 283 (393)
.+.+ +-+. +.+++||..-. +++=|. +||.|.+||=.=|--- =.+-|-+==|-+||.| +-|=.-=.
T Consensus 247 -~a~~-~~~~~~v~v~vNt~D~~~~g~~YLTvtGTSAE~GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYN 324 (407)
T 4hpv_A 247 -LASK-IAPGYNVRVYVNTGDKIDKNILYLTVTGTSAEHGDDGMTGRGNRGVGLITPMRPMSLEATAGKNPVNHVGKLYN 324 (407)
T ss_dssp -HHHH-HCTTSEEEEEECTTCBGGGTBCCEESSSCGGGGTCCEETTSSCCTTSSBCTTSCCCCCCCTTSCTTTCHHHHHH
T ss_pred -HHHh-cCCCCceEEEEecCCCcCCCceEEEecccccccCCCcccccCcccccccCCCCCccccccCCCCCccchhHHHH
Confidence 1111 2222 56889997632 233333 6899999993321100 1222344568899998 34555667
Q ss_pred hHHHHHHHHHHhh--cccceeEEEEEEEeccC--ceeEEEEeecCCCCCC----HHHHHHHHHHhC
Q 044516 284 YIVRQAAKSIVAS--GLARRCIVQVSYAIGVP--EPLSVFVDTYRTGKIP----DKEILRIVKENF 341 (393)
Q Consensus 284 Y~AR~iAKniVaA--GlA~~cevQlsYAIGva--~Pvsi~V~tfGt~~~~----~~~i~~~v~~~F 341 (393)
.+|..||+.|++. | .++|.|.|-=-||.+ +|....|...-...++ .+++.+++.+..
T Consensus 325 vlA~~iA~~I~~~v~g-v~ev~V~llSqIG~PId~P~~a~v~v~~~~g~~~~~~~~~v~~I~~~~L 389 (407)
T 4hpv_A 325 VLANLIANKIAQEVKD-VKFSQVQVLGQIGRPIDDPLIANVDVITYDGKLTDETKNEISGIVDEML 389 (407)
T ss_dssp HHHHHHHHHHHHHCTT-EEEEEEEEECCTTSBTTSCSEEEEEEEETTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-cceEEEEEecccCCCCCCCeEEEEEEecCCCCChHHHHHHHHHHHHHHH
Confidence 8899999999985 4 578999999999975 7877766665544344 345556655443
No 7
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=49.82 E-value=62 Score=29.51 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=57.9
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
++|.+||-|+.-.-.+++++|...+...--.|- +|. .+-++++..+|-.+|++++=|
T Consensus 13 ~~I~NvVas~~l~~~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (198)
T 1mp9_A 13 VNIENIVATVTLDQTLDLYAMERSVPNVEYDPDQFPGLIFRLESPKITSLIFKSGKMVVTG------------------- 73 (198)
T ss_dssp EEEEEEEEEEECCSCCCHHHHHHHSTTCBCCTTTCSSEEEEETTTTEEEEECTTSEEEEEC-------------------
T ss_pred eEEEEEEEEEEcCCcccHHHHHhhCCCCEECCccccceEEEcCCCceEEEEeCCCeEEEec-------------------
Confidence 689999999999999999999876644322221 222 113577899999999999654
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhcc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGl 298 (393)
.|--..+..++|.+|+.|-..|.
T Consensus 74 --------------akS~e~a~~a~~~i~~~L~~lG~ 96 (198)
T 1mp9_A 74 --------------AKSTDELIKAVKRIIKTLKKYGM 96 (198)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23334677778888888888886
No 8
>2gjh_A Designed protein; obligate symmetric HOMO-dimer, de novo protein; NMR {}
Probab=43.74 E-value=19 Score=26.93 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeeccCCh
Q 044516 64 NYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSP 101 (393)
Q Consensus 64 d~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (393)
.+..|.-++..+.||++-...+|.+++.|--.+..-|-
T Consensus 18 kfaailikvfaelgyndinvtwdgdtvtvegqleggsl 55 (62)
T 2gjh_A 18 KFAAILIKVFAELGYNDINVTWDGDTVTVEGQLEGGSL 55 (62)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEECSSCEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCcccceeEEcCCEEEEEeEEcCCcc
Confidence 45668889999999999988999999998877766553
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=39.10 E-value=62 Score=29.07 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=57.0
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 044516 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (393)
Q Consensus 185 p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (393)
.++|.+||-|+.-...+++++|...+..---.| -+|. .+-++++..+|-.+|++++=|
T Consensus 8 ~~~I~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~P~~t~lIF~SGKiv~TG------------------ 69 (182)
T 1ais_A 8 KLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSGKLVVTG------------------ 69 (182)
T ss_dssp EEEEEEEEEEEECCSCCCHHHHTTTSTTCBCCTTTCSSEEEECSSSCCEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCeeCHHHHHhhCCCcEECCCccccEEEEcCCCcEEEEEeCCCeEEEec------------------
Confidence 468999999999999999999876544322222 1222 123567889999999999655
Q ss_pred CccccccccCcCCCCCccccchhhHHHHHHHHHHhhcc
Q 044516 261 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298 (393)
Q Consensus 261 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGl 298 (393)
.|--..+.-++|.+++.|-..|+
T Consensus 70 ---------------akS~~~~~~a~~~i~~~L~~lG~ 92 (182)
T 1ais_A 70 ---------------AKSVQDIERAVAKLAQKLKSIGV 92 (182)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 23334667778888888888886
No 10
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=36.77 E-value=53 Score=29.75 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=56.3
Q ss_pred eEEeEEEEeeecCCCCChHHHHHHHHHhhcccc-cCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCCC
Q 044516 186 VRVHTVLISTQHDETVTNDEIAADLKEHVIKPV-IPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGG 261 (393)
Q Consensus 186 ~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~v-~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG 261 (393)
++|.+||-|+.=.-.+++++|...+..---.|- +|. .+-++++..+|-.+|++++=|
T Consensus 13 ~~i~NvVas~~l~~~ldL~~ia~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TG------------------- 73 (188)
T 2z8u_A 13 IKIVNVVVSTKIGDNIDLEEVAMILENAEYEPEQFPGLVCRLSVPKVALLIFRSGKVNCTG------------------- 73 (188)
T ss_dssp CEEEEEEEEEECCSSCCHHHHHHHSSCCC-------CEEEEETTTTEEEEECTTSEEEEEE-------------------
T ss_pred cEEEEEEEEEEeCCeeCHHHHHhhCCCCEECCCCcccEEEEcCCCcEEEEEeCCCeEEEec-------------------
Confidence 689999999999999999999876544222221 222 123577899999999999654
Q ss_pred ccccccccCcCCCCCccccchhhHHHHHHHHHHhhcc
Q 044516 262 WGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298 (393)
Q Consensus 262 ~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGl 298 (393)
.|--..+..++|.+|+.|-..|.
T Consensus 74 --------------AkS~e~a~~a~~~~~~~L~~lg~ 96 (188)
T 2z8u_A 74 --------------AKSKEEAEIAIKKIIKELKDAGI 96 (188)
T ss_dssp --------------ESSHHHHHHHHHHHHHHHHHTTC
T ss_pred --------------CCCHHHHHHHHHHHHHHHHhcCC
Confidence 23334677788888988888886
No 11
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=31.06 E-value=31 Score=26.11 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=14.8
Q ss_pred cCcCCCCCccccchhhHHHHHHHHH
Q 044516 269 AFSGKDPTKVDRSGAYIVRQAAKSI 293 (393)
Q Consensus 269 AfSGKDptKVDRSaAY~AR~iAKni 293 (393)
|.-|.|-| |.|=+|||+|+|+
T Consensus 17 avrgedrs----svaglarwlarnv 37 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNV 37 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHT
T ss_pred HHhccchh----hHHHHHHHHHHhc
Confidence 34455443 4588999999998
No 12
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=28.68 E-value=23 Score=28.92 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHhhCCCCCCCCCCCCceEEEEeeccCCh
Q 044516 64 NYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSP 101 (393)
Q Consensus 64 d~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~QS~ 101 (393)
.+..|.-++..+.||++-...||.+++.|--.+..-|-
T Consensus 62 kfaailikvfaelgyndinvtfdgdtvtvegqleggsl 99 (106)
T 1qys_A 62 KFAAILIKVFAELGYNDINVTFDGDTVTVEGQLEGGSL 99 (106)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETTEEEEEEEC-----
T ss_pred HHHHHHHHHHHHhCCcceeEEEcCCeEEEEeEEcCCcc
Confidence 46668889999999999999999999998877766554
No 13
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=28.58 E-value=39 Score=33.87 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCC
Q 044516 135 PEFMPLSHVLATQLGAKLTEVRKNGT 160 (393)
Q Consensus 135 ~~~MPl~i~lAh~l~~~l~~~Rk~g~ 160 (393)
..=+|.|+.+||+|+.++..+..-+.
T Consensus 384 ~v~vPap~~YAhklA~l~~~~~~~~~ 409 (427)
T 2w42_A 384 SRNLPVTVNYPKLVAGIIANVNRYGG 409 (427)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCcchHhHHHHHHHHhhhhhcCC
Confidence 34589999999999999999987444
No 14
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=27.60 E-value=43 Score=27.31 Aligned_cols=28 Identities=18% Similarity=0.105 Sum_probs=21.6
Q ss_pred CCCCCCHHHHHHHHHHhCCCChHHHHHH
Q 044516 324 RTGKIPDKEILRIVKENFDFRPGMIAIN 351 (393)
Q Consensus 324 Gt~~~~~~~i~~~v~~~Fdl~p~~Ii~~ 351 (393)
|...++-+.|.+.|.+.|+++|..|...
T Consensus 1 ~~~~it~~~I~~~Va~~f~v~~~dl~s~ 28 (101)
T 3pvv_A 1 GPHMISAATIMAATAEYFDTTVEELRGP 28 (101)
T ss_dssp ----CCHHHHHHHHHHHTTCCHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHhCC
Confidence 3456888999999999999999998644
No 15
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.39 E-value=2.4e+02 Score=25.23 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=56.1
Q ss_pred eeEEeEEEEeeecCCCCChHHHHHHHHHhhccc-ccCC---CCCCCCcEEEECCCCCeEEcCCCCCcccCCceEEEecCC
Q 044516 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKP-VIPE---KYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYG 260 (393)
Q Consensus 185 p~~i~tiviS~QH~~~i~~~~l~~~i~e~vi~~-v~~~---~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 260 (393)
.++|.+||-|+.-.-.++++++...+..---.| -+|. .+.++++..+|=.+|+.|+=|
T Consensus 4 ~~~I~NiVas~~l~~~ldL~~ia~~~~n~eYePe~fpgli~R~~~Pk~~~lIF~SGKiv~TG------------------ 65 (180)
T 1ytb_A 4 VPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVVTG------------------ 65 (180)
T ss_dssp CCEEEEEEEEEECCSCCCHHHHHHHSSSEECCTTTCSSEEEEETTTTEEEEECTTSEEEEEE------------------
T ss_pred ceEEEEEEEEEEcCCccCHHHHHhhCCCCEECccccCCEEEEeCCCcEEEEEECCCeEEEEe------------------
Confidence 368899999999999999999886543221222 1222 123578899999999999755
Q ss_pred CccccccccCcCCCCCccccchhhHHHHHHHHHHhhcc
Q 044516 261 GWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298 (393)
Q Consensus 261 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaAGl 298 (393)
.|--..+.-+++.+++-|-..|+
T Consensus 66 ---------------aks~e~~~~a~~~i~~~L~~lg~ 88 (180)
T 1ytb_A 66 ---------------AKSEDDSKLASRKYARIIQKIGF 88 (180)
T ss_dssp ---------------ESSHHHHHHHHHHHHHHHHHHTC
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHHcCC
Confidence 23334556668888888877776
Done!