RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044516
(393 letters)
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase.
Length = 386
Score = 848 bits (2193), Expect = 0.0
Identities = 362/386 (93%), Positives = 375/386 (97%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
METFLFTSESVNEGHPDKLCDQISDA+LDACL QDPDSKVACETCTKTN+VMVFGEITTK
Sbjct: 1 METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60
Query: 61 ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
A V+YEKIVRDTCR IGFVSDDVGLDAD CKVLV IEQQSPDIAQGVHGHL+K+PEEIGA
Sbjct: 61 AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120
Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
GDQGHMFGYATDETPE MPL+HVLAT+LGA+LTEVRKNGTCPWLRPDGKTQVTVEY NE
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180
Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKS+VA+GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300
Query: 301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
RCIVQVSYAIGVPEPLSVFVDTY TGKIPDKEIL+IVKENFDFRPGMIAINLDLKRGGN
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG 360
Query: 361 RFLKTAAYGHFGREDPDFTWEVVKPL 386
RF KTAAYGHFGR+DPDFTWEVVKPL
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPL 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
Length = 398
Score = 739 bits (1910), Expect = 0.0
Identities = 278/394 (70%), Positives = 320/394 (81%), Gaps = 8/394 (2%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
+ FLFTSESV+EGHPDKLCDQISDA+LDACL QDP SKVACETC KT +VMVFGEITTK
Sbjct: 8 VGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTK 67
Query: 61 ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
A V+Y+K+VRDT + IG+ + GLD C VLV IEQQSPDIAQGVH K+ E+IGA
Sbjct: 68 AVVDYQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIEQQSPDIAQGVHVG--KKEEDIGA 125
Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEY-YNE 179
GDQG MFGYATDET E MPL+H LAT+L +L+E+RKNG PWLRPD KTQVTVEY Y+
Sbjct: 126 GDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGILPWLRPDAKTQVTVEYEYDT 185
Query: 180 NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 239
G + P RVHT+LISTQHDE V+N+EI DL EHVIKPVIP K LDE+T +HLNPSGRFV
Sbjct: 186 RGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFV 245
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299
IGGPHGDAGLTGRKII+DTYGGWGAHGGGAFSGKDP+KVDRS AY R AKS+VA+GL
Sbjct: 246 IGGPHGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLC 305
Query: 300 RRCIVQVSYAIGVPEPLSVFVDTYRTGKIP--DKEILRIVKENFDFRPGMIAINLDLKRG 357
+RC+VQVSYAIGV EPLS+ V+TY TGK D+++L IV++NFD RPG I LDL+R
Sbjct: 306 KRCLVQVSYAIGVAEPLSIHVNTYGTGKKGYDDEDLLEIVQKNFDLRPGDIIKELDLRRP 365
Query: 358 GNSRFLKTAAYGHFGREDPDFTWEVVKPLKYEKP 391
F KTA+YGHFGR DP+FTWEV K L++EK
Sbjct: 366 I---FQKTASYGHFGRSDPEFTWEVPKDLEHEKD 396
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
Length = 384
Score = 674 bits (1741), Expect = 0.0
Identities = 238/378 (62%), Positives = 288/378 (76%), Gaps = 10/378 (2%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANV 63
+LFTSESV+EGHPDK+ DQISDAILDA L QDP+++VACET T LV+V GEITT A V
Sbjct: 3 YLFTSESVSEGHPDKIADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYV 62
Query: 64 NYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQ 123
+ E+IVR+T + IG+ S + G DA+ C VLV I +QSPDIAQGV +EIGAGDQ
Sbjct: 63 DIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGEQSPDIAQGVD---RDELDEIGAGDQ 119
Query: 124 GHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAM 183
G MFGYA +ETPE MPL LA +L +L EVRK+GT P+LRPD K+QVTVEY ENG
Sbjct: 120 GIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLPYLRPDAKSQVTVEY--ENG-- 175
Query: 184 VPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGP 243
PVR+ T+++STQHD V+ +++ D+ E VIKPV+P + LDE T F +NP+GRFVIGGP
Sbjct: 176 KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGGP 235
Query: 244 HGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCI 303
GDAGLTGRKII+DTYGG+ HGGGAFSGKDPTKVDRS AY R AK+IVA+GLA RC
Sbjct: 236 QGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCE 295
Query: 304 VQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFL 363
VQ+SYAIGV EP+S++VDT+ TGK+ D++I V+E FD RP I LDL+R +
Sbjct: 296 VQLSYAIGVAEPVSIYVDTFGTGKVSDEKIEEAVREVFDLRPAGIIKMLDLRRP---IYR 352
Query: 364 KTAAYGHFGREDPDFTWE 381
KTAAYGHFGRED DF WE
Sbjct: 353 KTAAYGHFGREDLDFPWE 370
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme
metabolism].
Length = 388
Score = 627 bits (1620), Expect = 0.0
Identities = 234/381 (61%), Positives = 285/381 (74%), Gaps = 8/381 (2%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
+ FLFTSESV+EGHPDK+CDQISDAILDA L+QDP+S+VACET T LV++ GEITT
Sbjct: 2 KKYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTS 61
Query: 61 ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGA 120
A V+ I R T + IG+ D G DA C VLV I +QSPDIAQGV + +EIGA
Sbjct: 62 AYVDIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIGEQSPDIAQGVDEAD-EELDEIGA 120
Query: 121 GDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNEN 180
GDQG MFGYA +ETPE MPL LA +L +L EVRKNG PWLRPD K+QVTVEY +N
Sbjct: 121 GDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELPWLRPDAKSQVTVEY-EDN 179
Query: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240
G PVR+ T+++STQHD ++ +++ D+ E +IKPV+PE+ LD+KT + +NP+GRFVI
Sbjct: 180 G--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVI 237
Query: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLAR 300
GGP GDAGLTGRKII+DTYGG+ HGGGAFSGKDPTKVDRS AY R AK+IVA+GLA
Sbjct: 238 GGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLAD 297
Query: 301 RCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNS 360
RC VQ+SYAIGV EP+S+ VDT+ TGK+ +++I V++ FD RP I LDL R
Sbjct: 298 RCEVQLSYAIGVAEPVSISVDTFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP--- 354
Query: 361 RFLKTAAYGHFGREDPDFTWE 381
+ KTAAYGHFGRED DF WE
Sbjct: 355 IYRKTAAYGHFGRED-DFPWE 374
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes
of this S-adenosylmethionine synthetase in E. coli are
designated MetK and MetX [Central intermediary
metabolism, Other].
Length = 377
Score = 589 bits (1521), Expect = 0.0
Identities = 229/383 (59%), Positives = 283/383 (73%), Gaps = 12/383 (3%)
Query: 5 LFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANVN 64
LFTSESV+EGHPDK+ DQISDA+LDA L+QDP +KVACET KT LV++ GEITT A V+
Sbjct: 1 LFTSESVSEGHPDKIADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVD 60
Query: 65 YEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVHGHLSKRPEEIGAGDQG 124
+++ R+T ++IG+ D G DA C VLV I QSPDIAQGV PEE GAGDQG
Sbjct: 61 IQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGNQSPDIAQGVDK---ANPEEQGAGDQG 117
Query: 125 HMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYNENGAMV 184
MFGYAT+ETPE MPL LA +L + E+RK+GT PWLRPDGK+QVTV+Y +
Sbjct: 118 IMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWLRPDGKSQVTVQYEDNK---- 173
Query: 185 PVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPH 244
PVRV T+++STQHD ++ ++ + E +IKPV+P +YLDEKT F +NP+GRFVIGGP
Sbjct: 174 PVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPM 233
Query: 245 GDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIV 304
GD GLTGRKII+DTYGGW HGGGAFSGKDP+KVDRS AY R AK+IVA+GLA RC V
Sbjct: 234 GDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEV 293
Query: 305 QVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLK 364
Q+SYAIGV EP+S+ ++T+ T K ++E+L +VKENFD RPG I LDL + + K
Sbjct: 294 QLSYAIGVAEPVSIMIETFGTSKKSEEELLNVVKENFDLRPGGIIEKLDLLK---PIYRK 350
Query: 365 TAAYGHFGREDPDFTWEVVKPLK 387
TA YGHFGRE +F WE L+
Sbjct: 351 TAVYGHFGRE--EFPWEKPDKLE 371
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
Length = 386
Score = 539 bits (1392), Expect = 0.0
Identities = 224/385 (58%), Positives = 277/385 (71%), Gaps = 13/385 (3%)
Query: 1 METFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTK 60
M TFLFTSESV EGHPDKLCDQISDAILDACL QDP S+VACE T +V+V GEIT+
Sbjct: 1 MSTFLFTSESVTEGHPDKLCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSS 60
Query: 61 ANVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGV--HGHLSKRPEEI 118
A V+ EKIVR+ + IG+ D++G D C VLV + +QSPDIAQGV + EE+
Sbjct: 61 AKVDIEKIVRNVIKEIGY--DELGFDPRTCTVLVSLGEQSPDIAQGVDTAEGRDEELEEL 118
Query: 119 GAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVEYYN 178
GAGDQG MFGYA DETPE MPL VLA +L +L + RK+G P L PDGKTQVTVEY +
Sbjct: 119 GAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKDGLLPGLLPDGKTQVTVEYED 178
Query: 179 ENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRF 238
PVRV T+++S QHDE+V + + D+ E+VIKPV + +LD++T +NP+GRF
Sbjct: 179 G----RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRF 234
Query: 239 VIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGL 298
V+GGP D GLTGRKI++DTYGG+ HGGGAFSGKDP+KVDRS AY R AK+IVA+GL
Sbjct: 235 VVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGL 294
Query: 299 ARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGG 358
A+RC VQ+SYAIG P+SV V+T+ TG + D+E+ R V+E+FD RP I L+L+
Sbjct: 295 AKRCEVQLSYAIGKARPVSVQVNTFGTGTVSDEELTRAVREHFDLRPAGIIEKLNLR--- 351
Query: 359 NSRFLKTAAYGHFGREDPDFTWEVV 383
N + KTAAYGHFGR F WE
Sbjct: 352 NPIYRKTAAYGHFGRT--LFPWEKT 374
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase,
C-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 138
Score = 257 bits (659), Expect = 2e-86
Identities = 101/142 (71%), Positives = 116/142 (81%), Gaps = 5/142 (3%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299
IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKDPTKVDRS AY R AKS+VA+GLA
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLA 60
Query: 300 RRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGN 359
RRC+VQVSYAIGV EPLS+ VDTY T K ++E+L IV++NFD RPG+I LDLK+
Sbjct: 61 RRCLVQVSYAIGVAEPLSIMVDTYGTSKKSEEELLEIVRKNFDLRPGVIVKMLDLKKP-- 118
Query: 360 SRFLKTAAYGHFGREDPDFTWE 381
+ +TAAYGHFGR+ DF WE
Sbjct: 119 -IYQQTAAYGHFGRD--DFPWE 137
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
central domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 119
Score = 229 bits (586), Expect = 2e-75
Identities = 75/123 (60%), Positives = 95/123 (77%), Gaps = 4/123 (3%)
Query: 116 EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVE 175
+EIGAGDQG MFGYAT+ETPE MPL VLA +L +L E+RKNGT P+LRPDGK+QVTVE
Sbjct: 1 DEIGAGDQGIMFGYATNETPELMPLPIVLAHRLLRRLAELRKNGTLPYLRPDGKSQVTVE 60
Query: 176 YYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPS 235
Y + PVRV TV++STQHD V+ +E+ D+ E VIKPV+PE+ LD+ T + +NP+
Sbjct: 61 YED----GKPVRVDTVVVSTQHDPDVSLEELREDIIEEVIKPVLPEELLDDDTKYLINPT 116
Query: 236 GRF 238
GRF
Sbjct: 117 GRF 119
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase,
N-terminal domain. The three domains of
S-adenosylmethionine synthetase have the same alpha+beta
fold.
Length = 100
Score = 196 bits (501), Expect = 7e-63
Identities = 65/100 (65%), Positives = 79/100 (79%)
Query: 2 ETFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKA 61
+LFTSESV+EGHPDK+CDQISDAILDA L QDP+S+VACET T LV+V GEITT A
Sbjct: 1 SRYLFTSESVSEGHPDKICDQISDAILDAFLAQDPNSRVACETLVTTGLVVVAGEITTSA 60
Query: 62 NVNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSP 101
V+ EKIVR+ ++IG+ S ++G DAD C VLV I +QSP
Sbjct: 61 YVDIEKIVREVIKDIGYDSSELGFDADTCAVLVSIHEQSP 100
>gnl|CDD|227021 COG4676, COG4676, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 268
Score = 31.3 bits (71), Expect = 0.63
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 166 PDGKTQVTVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKP 217
DG+++ V++Y N R+ VL + D DL HV+ P
Sbjct: 121 ADGQSRQRVQFYETNAGKTRARLRVVL---------SWDTDNTDLDLHVVTP 163
>gnl|CDD|182361 PRK10294, PRK10294, 6-phosphofructokinase 2; Provisional.
Length = 309
Score = 31.3 bits (71), Expect = 0.86
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 269 AFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSY--AIGVPEPLSVFV 320
A +D T+ D VR+AA+ +V SG A+R +V + A+GV + V
Sbjct: 193 ALVNRDLTQPDD-----VRKAAQELVNSGKAKRVVVSLGPQGALGVDSENCIQV 241
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 30.3 bits (69), Expect = 2.0
Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 80 SDDVGLDADNCKVLVYIEQQSPDI----AQGVHGHLSKRPEEIGAGDQGHMFGYATDET 134
V LDAD ++ P G+ RP + M G TDE
Sbjct: 307 GAHVYLDADGSLDAEGLKATLPAFNEEAIFGLDVDPYDRPIPVFPAQHYTMGGVRTDEN 365
>gnl|CDD|238871 cd01833, XynB_like, SGNH_hydrolase subfamily, similar to
Ruminococcus flavefaciens XynB. Most likely a secreted
hydrolase with xylanase activity. SGNH hydrolases are a
diverse family of lipases and esterases. The tertiary
fold of the enzyme is substantially different from that
of the alpha/beta hydrolase family and unique among all
known hydrolases; its active site closely resembles the
Ser-His-Asp(Glu) triad found in other serine
hydrolases.
Length = 157
Score = 29.1 bits (66), Expect = 2.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 12 NEGHPDKLCDQISDAILDACLEQDPD 37
+EGH L DQI+ A D L PD
Sbjct: 17 HEGHSGYLIDQIAAAAADWVLAAKPD 42
>gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase. This model
represents a subfamily of the short chain
dehydrogenases. Characterized members so far as
3-hydroxybutyrate dehydrogenases and are found in
species that accumulate ester polmers called
polyhydroxyalkanoic acids (PHAs) under certain
conditions. Several members of the family are from
species not known to accumulate PHAs, including
Oceanobacillus iheyensis and Bacillus subtilis. However,
polymer formation is not required for there be a role
for 3-hydroxybutyrate dehydrogenase; it may be members
of this family have the same function in those species.
Length = 255
Score = 29.3 bits (66), Expect = 3.1
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 219 IPEKYLDEKTIFHLNPSGRFV----IGG------PHGDAGLTGRKIIIDTYGGWGAH 265
IPE+ + + + P+ RFV + A +TG+ I++D GGW A
Sbjct: 201 IPEEQVIREVMLKGQPTKRFVTVDEVAETALYLASDAAAQITGQAIVLD--GGWTAQ 255
>gnl|CDD|217121 pfam02582, DUF155, Uncharacterized ACR, YagE family COG1723.
Length = 174
Score = 28.7 bits (65), Expect = 3.2
Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 42/105 (40%)
Query: 291 KSIVASGLAR------------RCIVQVSYAIGVPEPLSVFVDTYRTGKIP--DKEILRI 336
K ++ LA+ + +PE L+ +TGK+ KE+L++
Sbjct: 72 KLAISHALAQSVKLSVFEEQVDNLLESTEP---LPEELA------KTGKLNLSRKELLKL 122
Query: 337 VKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 381
+ E R INL S L T PDF W+
Sbjct: 123 IGELLSLR---HRINL------YSDLLDT----------PDFFWD 148
>gnl|CDD|222179 pfam13501, SoxY, Sulfur oxidation protein SoxY. This domain is
found in the sulfur oxidation protein SoxY. It is
closely related to the Desulfoferrodoxin family
pfam01880. Dissimilatory oxidation of thiosulfate is
carried out by the ubiquitous sulfur-oxidizing (Sox)
multi-enzyme system. In this system, SoxY plays a key
role, functioning as the sulfur substrate-binding
protein that offers its sulfur substrate, which is
covalently bound to a conserved C-terminal cysteine, to
another oxidizing Sox enzyme. The structure of this
domain shows an Ig-like fold.
Length = 110
Score = 27.9 bits (63), Expect = 3.2
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 164 LRPDGKTQVTVEYYNENGAMVPVRVHTVL 192
+ G+ ++ ENGA+VPV V L
Sbjct: 12 VVESGRVKLDAPDIAENGAVVPVTVDVDL 40
>gnl|CDD|216266 pfam01051, Rep_3, Initiator Replication protein. This protein is
an initiator of plasmid replication. RepB possesses
nicking-closing (topoisomerase I) like activity. It is
also able to perform a strand transfer reaction on ssDNA
that contains its target. This family also includes RepA
which is an E.coli protein involved in plasmid
replication. The RepA protein binds to DNA repeats that
flank the repA gene.
Length = 218
Score = 29.2 bits (66), Expect = 3.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 208 ADLKEHVIKPVIPEKYLDEKTIFHLNPS----GRFVIG 241
D K V+KP I E ++EKT +L GR ++G
Sbjct: 178 KDFKRRVLKPAIKE--INEKTDINLEYEKIKKGRKIVG 213
>gnl|CDD|130300 TIGR01233, lacG, 6-phospho-beta-galactosidase. This enzyme is part
of the tagatose-6-phosphate pathway of
galactose-6-phosphate degradation [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 467
Score = 28.9 bits (64), Expect = 5.0
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 275 PTKVDRSGAYIVRQAAKSIVASGLARRCI---VQVSYAIGVPEPLSVFVDTYRTGKIPDK 331
P + +G ++ R+ + + A C +V+Y E + Y GK P
Sbjct: 119 PEALHSNGDFLNRENIEHFID--YAAFCFEEFPEVNYWTTFNEIGPIGDGQYLVGKFPPG 176
Query: 332 EILRIVK 338
+ K
Sbjct: 177 IKYDLAK 183
>gnl|CDD|235298 PRK04439, PRK04439, S-adenosylmethionine synthetase; Provisional.
Length = 399
Score = 29.0 bits (66), Expect = 5.3
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 14 GHPDKLCDQISDAI 27
GHPD +CD I++A+
Sbjct: 28 GHPDTICDGIAEAV 41
>gnl|CDD|178342 PLN02741, PLN02741, riboflavin synthase.
Length = 194
Score = 28.1 bits (63), Expect = 6.8
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 40 VACETCTKTNLVMVFGEITTKANVNYEKIVRDTCRNIG-FVSDDV 83
+A ET KT+L GE+ T + VN E+ +R R G FV V
Sbjct: 63 LAPETLRKTSL----GELKTGSLVNLERALRPGSRMGGHFVQGHV 103
>gnl|CDD|220710 pfam10351, Apt1, Golgi-body localisation protein domain. This is
the C-terminus of a family of proteins conserved from
plants to humans. The plant members are localised to the
Golgi proteins and appear to regulate membrane
trafficking, as they are required for rapid vesicle
accumulation at the tip of the pollen tube. The
C-terminus probably contains the Golgi localisation
signal and it is well-conserved.
Length = 451
Score = 28.4 bits (64), Expect = 7.3
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 197 HDETVTNDEIAADLKEHVIKPVI 219
H++T + ++A LK+ VIK ++
Sbjct: 425 HNKTWSWLDLALALKKDVIKALL 447
>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup
contains atypical SDRs, some of which are identified as
putative NAD(P)-dependent epimerases, one as a putative
NAD-dependent epimerase/dehydratase. Atypical SDRs are
distinct from classical SDRs. Members of this subgroup
have a glycine-rich NAD(P)-binding motif that is very
similar to the extended SDRs, GXXGXXG, and binds NADP.
Generally, this subgroup has poor conservation of the
active site tetrad; however, individual sequences do
contain matches to the YXXXK active site motif, the
upstream Ser, and there is a highly conserved Asp in
place of the usual active site Asn throughout the
subgroup. Atypical SDRs generally lack the catalytic
residues characteristic of the SDRs, and their
glycine-rich NAD(P)-binding motif is often different
from the forms normally seen in classical or extended
SDRs. Atypical SDRs include biliverdin IX beta reductase
(BVR-B,aka flavin reductase), NMRa (a negative
transcriptional regulator of various fungi),
progesterone 5-beta-reductase like proteins,
phenylcoumaran benzylic ether and
pinoresinol-lariciresinol reductases, phenylpropene
synthases, eugenol synthase, triphenylmethane reductase,
isoflavone reductases, and others. SDRs are a
functionally diverse family of oxidoreductases that have
a single domain with a structurally conserved Rossmann
fold, an NAD(P)(H)-binding region, and a structurally
diverse C-terminal region. Sequence identity between
different SDR enzymes is typically in the 15-30% range;
they catalyze a wide range of activities including the
metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase numbering). In
addition to the Tyr and Lys, there is often an upstream
Ser and/or an Asn, contributing to the active site;
while substrate binding is in the C-terminal region,
which determines specificity. The standard reaction
mechanism is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. In addition to the
Rossmann fold core region typical of all SDRs, extended
SDRs have a less conserved C-terminal extension of
approximately 100 amino acids, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 203
Score = 28.0 bits (63), Expect = 7.4
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 264 AHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEP 315
A G G G VD G + AAK +G+ R V VS +IG +P
Sbjct: 70 AAGSGGKGGPRTEAVDYDGNINLIDAAK---KAGVKR--FVLVS-SIGADKP 115
>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active
dehydrogenase/acetaldehyde-active reductase;
Provisional.
Length = 338
Score = 28.1 bits (63), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 294 VASGLARRCIVQVSYAIGVPEPL 316
V G+A +CIV YA+ VPE L
Sbjct: 114 VDGGMAEQCIVTADYAVKVPEGL 136
>gnl|CDD|227583 COG5258, GTPBP1, GTPase [General function prediction only].
Length = 527
Score = 28.2 bits (63), Expect = 10.0
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 14/90 (15%)
Query: 101 PDIAQGVHGHLSKRPEE--------IGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKL 152
D + G + R EE IG D G G + ++ E + + LA ++GA +
Sbjct: 30 EDRLDRLAGQMKYRLEEGDGEAVYVIGVSDDGEPLGLSDEKLVESIEVLRELAREVGASI 89
Query: 153 TEVRKNGTCPWLRPDGKT-QVTVEYYNENG 181
VR DG +V V E
Sbjct: 90 YIVRV-----HEGTDGYVAEVLVRRKTEEA 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,617,868
Number of extensions: 2046393
Number of successful extensions: 1804
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1784
Number of HSP's successfully gapped: 30
Length of query: 393
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 294
Effective length of database: 6,546,556
Effective search space: 1924687464
Effective search space used: 1924687464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)