RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044516
(393 letters)
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 144
Score = 213 bits (543), Expect = 2e-69
Identities = 97/149 (65%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299
IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRS AY R AKS+V GL
Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60
Query: 300 RRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGN 359
RR +VQVSYAIGV PLS+ + Y T + ++E+L IVK+NFD RPG+I +LDLK+
Sbjct: 61 RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK--- 117
Query: 360 SRFLKTAAYGHFGREDPDFTWEVVKPLKY 388
+ +TAAYGHFGR+ F WEV K LKY
Sbjct: 118 PIYQRTAAYGHFGRD--SFPWEVPKKLKY 144
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 152
Score = 205 bits (524), Expect = 2e-66
Identities = 86/142 (60%), Positives = 103/142 (72%), Gaps = 5/142 (3%)
Query: 240 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLA 299
IGGP GD GLTGRKII+DTYGG HGGGAFSGKDP+KVDRS AY R AK+IVA+GLA
Sbjct: 1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLA 60
Query: 300 RRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGN 359
RC +QVSYAIGV EP S+ V+T+ T K+P +++ +V+E FD RP + LDL
Sbjct: 61 DRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLH--- 117
Query: 360 SRFLKTAAYGHFGREDPDFTWE 381
+ +TAAYGHFGRE F WE
Sbjct: 118 PIYKETAAYGHFGRE--HFPWE 137
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase
{Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 126
Score = 182 bits (462), Expect = 2e-57
Identities = 85/124 (68%), Positives = 100/124 (80%)
Query: 116 EEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQVTVE 175
E+IGAGDQG MFGYATDET E MPL+ VLA +L AKL E+R+NGT PWLRPD KTQVTV+
Sbjct: 3 EDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQ 62
Query: 176 YYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPS 235
Y + GA++P+RVHT++IS QHDE V DE+ LKE VIK V+P KYLDE TI+HL PS
Sbjct: 63 YMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPS 122
Query: 236 GRFV 239
GRFV
Sbjct: 123 GRFV 126
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 175 bits (444), Expect = 7e-55
Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 113 KRPEEIGAGDQGHMFGYATDETPEFMPLSHVLATQLGAKLTEVRKNGTCPWLRPDGKTQV 172
P E GAGDQG MFGYAT+ET MP A +L + EVRKNGT PWLRPD K+QV
Sbjct: 2 ADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPWLRPDAKSQV 61
Query: 173 TVEYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHL 232
T +Y + V + V++STQH E + + + E +IKP++P ++L T F +
Sbjct: 62 TFQYDDGK----IVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFI 117
Query: 233 NPSGRFV 239
NP+GRFV
Sbjct: 118 NPTGRFV 124
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human
(Homo sapiens), isoform type-2 [TaxId: 9606]}
Length = 110
Score = 167 bits (424), Expect = 4e-52
Identities = 68/106 (64%), Positives = 86/106 (81%)
Query: 3 TFLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKAN 62
TFLFTSESV EGHPDK+CDQISDA+LDA L+QDPD+KVACET KT ++++ GEIT++A
Sbjct: 2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 61
Query: 63 VNYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDIAQGVH 108
V+Y+K+VR+ ++IG+ G D C VLV +EQQSPDIAQGVH
Sbjct: 62 VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH 107
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 102
Score = 153 bits (387), Expect = 1e-46
Identities = 64/100 (64%), Positives = 79/100 (79%)
Query: 4 FLFTSESVNEGHPDKLCDQISDAILDACLEQDPDSKVACETCTKTNLVMVFGEITTKANV 63
LFTSESV+EGHPDK+ DQISDA+LDA LEQDP ++VACET KT +V+V GEITT A V
Sbjct: 3 HLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWV 62
Query: 64 NYEKIVRDTCRNIGFVSDDVGLDADNCKVLVYIEQQSPDI 103
+ E+I R+T R IG+V D+G DA++C VL I +QSPDI
Sbjct: 63 DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI 102
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 29.1 bits (64), Expect = 1.0
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 273 KDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTY---RTGKIP 329
D + A +V + K++ + QV+ A + + VFVD TGK+
Sbjct: 470 PDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGV-VFVDEVPKGLTGKL- 527
Query: 330 DKEILR 335
D +R
Sbjct: 528 DARKIR 533
>d1u5la_ d.6.1.1 (A:) Prion protein domain {Red-eared slider turtle
(Trachemys scripta) [TaxId: 34903]}
Length = 107
Score = 25.9 bits (57), Expect = 4.1
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 176 YYNENGAMVPVRVHTVLISTQH--DETVTNDEIAADLKEHVIKP 217
++NEN P +V+ + + + D + + E+ I P
Sbjct: 31 WWNENSNRYPNQVYYKEYNDRSVPEGRFVRDCVNITVTEYKIDP 74
>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia)
[TaxId: 35158]}
Length = 121
Score = 25.9 bits (57), Expect = 5.0
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 258 TYGGWGAHGGGAFSGKDPTKVD-RSGAYI 285
T+ +G GG FS + + RSG+Y+
Sbjct: 3 THRKFGGSGGSPFS--GLSSIAVRSGSYL 29
>d1xu0a_ d.6.1.1 (A:) Prion protein domain {African clawed frog
(Xenopus laevis) [TaxId: 8355]}
Length = 102
Score = 25.2 bits (55), Expect = 5.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 176 YYNENGAMVPVRVHTVLISTQHDETVTNDEIAAD-----LKEHVIKP 217
YYN+ +P RV+ + +E V+ D D + E++IKP
Sbjct: 25 YYNDYYNQMPNRVYRPMYRG--EEYVSEDRFVRDCYNMSVTEYIIKP 69
>d1sr4c_ b.42.2.1 (C:) Cytolethal distending toxin subunit C
{Haemophilus ducreyi [TaxId: 730]}
Length = 154
Score = 25.6 bits (56), Expect = 7.3
Identities = 13/82 (15%), Positives = 19/82 (23%), Gaps = 9/82 (10%)
Query: 22 QISDAILDACLEQDPDSKVACETCTKTNLVMVFGEI-TTKANVNYEKIVRDTCRNIGFVS 80
Q C C+ T VF I T + + C
Sbjct: 63 QFKVVGAAKCFAFLGKGTTDCKDTDHT----VFNLIPTNTGAFLIKDALLGFCIT-SHDF 117
Query: 81 DDVGLD---ADNCKVLVYIEQQ 99
DD+ L+ + Q
Sbjct: 118 DDLKLEPCGGSVSGRTFSLAYQ 139
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 75
Score = 24.2 bits (53), Expect = 8.0
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 22/69 (31%)
Query: 330 DKEILRIVKENFDFRP-GM----IAINLD-----------------LKRGGNSRFLKTAA 367
D++IL+ + E + P G+ ++ ++ L R R + A
Sbjct: 7 DRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTEKA 66
Query: 368 YGHFGREDP 376
Y H E P
Sbjct: 67 YKHLKYEVP 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.414
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,559,190
Number of extensions: 77498
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 17
Length of query: 393
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,213,086
Effective search space: 371204316
Effective search space used: 371204316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)