BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044519
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 125/252 (49%), Gaps = 13/252 (5%)
Query: 91 PMVLVQIPMYNEK-EVYKLSIGAACGLSWPSD-RLIVQVLDDSTNEVLRTDFFQYTQKLV 148
P V + +P YNE ++ +++ AA + +P+ R +V D T++ + + QK
Sbjct: 140 PTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQ 199
Query: 149 ELEC-LKWIEKGVNVKYETRKNRNGYKAGALKEGLEKQYVKDCQFVVIFDADFQPDEDFL 207
E L+ + + + V Y TR+ KAG + LE+ + VV+FDAD P DFL
Sbjct: 200 ERRRELQQLCRELGVVYSTRERNEHAKAGNMSAALERL---KGELVVVFDADHVPSRDFL 256
Query: 208 WRTIPYLLENKELGLVQARWKFVNADE-----CLMTRLQEMSLDYHFSVEQEVGSSTCQF 262
RT+ Y +E+ +L LVQ F+N D L R + ++ + + + F
Sbjct: 257 ARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAF 316
Query: 263 FGFNGTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWKFVFVGDLGVKNELPSTFK 322
F G+A V R +A+++AGG+ T ED + A+ +GWK +++ + P TF
Sbjct: 317 F--CGSAAVLRRRALDEAGGFAGETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFA 374
Query: 323 AYRYQQHRWSCG 334
++ Q+ RW+ G
Sbjct: 375 SFIQQRGRWATG 386
>pdb|3CPQ|A Chain A, Crystal Structure Of L30e A Ribosomal Protein From
Methanocaldococcus Jannaschii Dsm2661 (Mj1044)
pdb|3CPQ|B Chain B, Crystal Structure Of L30e A Ribosomal Protein From
Methanocaldococcus Jannaschii Dsm2661 (Mj1044)
Length = 110
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 80 MKEDLELNKSYPMVLVQIPMYNEKEVYKLSIGAACGLSWPSDRLIVQVLDDSTNEVL 136
+ +DLE + Y L IP+Y K + L +GA CG +P L+ VLD+ + ++
Sbjct: 47 IPKDLEEDVKYYAKLSNIPVYQHK-ITSLELGAVCGKPFPVAALL--VLDEGLSNIM 100
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 248 HFSVEQEVGSS-TCQFFGFNGTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWKF 305
H S + +VG T G G G+++I++I D G +D + + + AV KG+ F
Sbjct: 40 HVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIEEQAVERGPKGFNF 98
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 267 GTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWK-FVFVGDLGVKNELPSTFKAYR 325
GT + +Q E G + + + DLA R L + V +GD G+ LP Y
Sbjct: 111 GTLSRYAVQVAEGMGYLESKRFIH-RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYV 169
Query: 326 YQQHR-----WSCGPSNLFSK 341
Q+HR W C P +L ++
Sbjct: 170 MQEHRKVPFAW-CAPESLKTR 189
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 267 GTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWK-FVFVGDLGVKNELPSTFKAYR 325
GT + +Q E G + + + DLA R L + V +GD G+ LP Y
Sbjct: 111 GTLSRYAVQVAEGMGYLESKRFIH-RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYV 169
Query: 326 YQQHR-----WSCGPSNLFSK 341
Q+HR W C P +L ++
Sbjct: 170 MQEHRKVPFAW-CAPESLKTR 189
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 267 GTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWK-FVFVGDLGVKNELPSTFKAYR 325
GT + +Q E G + + + DLA R L + V +GD G+ LP Y
Sbjct: 115 GTLSRYAVQVAEGMGYLESKRFIH-RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYV 173
Query: 326 YQQHR-----WSCGPSNLFSK 341
Q+HR W C P +L ++
Sbjct: 174 MQEHRKVPFAW-CAPESLKTR 193
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 267 GTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWK-FVFVGDLGVKNELPSTFKAYR 325
GT + +Q E G + + + DLA R L + V +GD G+ LP Y
Sbjct: 121 GTLSRYAVQVAEGMGYLESKRFIH-RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYV 179
Query: 326 YQQHR-----WSCGPSNLFSK 341
Q+HR W C P +L ++
Sbjct: 180 MQEHRKVPFAW-CAPESLKTR 199
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 267 GTAGVWRIQAIEDAGGWKDRTTVEDMDLAVRASLKGWK-FVFVGDLGVKNELPSTFKAYR 325
GT + +Q E G + + + DLA R L + V +GD G+ LP Y
Sbjct: 115 GTLSRYAVQVAEGMGYLESKRFIH-RDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYV 173
Query: 326 YQQHR-----WSCGPSNLFSK 341
Q+HR W C P +L ++
Sbjct: 174 MQEHRKVPFAW-CAPESLKTR 193
>pdb|1E4I|A Chain A, 2-Deoxy-2-Fluoro-Beta-D-GlucosylENZYME INTERMEDIATE
Complex Of The Beta-Glucosidase From Bacillus Polymyxa
Length = 447
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 218 KELGLVQARWK------FVNADECLMTRLQEMSLDYHFSVEQEVGSSTCQFFGFNGTAGV 271
KELG+ R+ F N D + + LDY+ V + + + F T
Sbjct: 68 KELGIRTYRFSVSWPRIFPNGD----GEVNQKGLDYYHRVVDLLNDNGIEPFC---TLYH 120
Query: 272 WRI-QAIEDAGGWKDRTTVE 290
W + QA++DAGGW +R T++
Sbjct: 121 WDLPQALQDAGGWGNRRTIQ 140
>pdb|1TR1|A Chain A, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|B Chain B, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|C Chain C, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
pdb|1TR1|D Chain D, Crystal Structure Of E96k Mutated Beta-glucosidase A From
Bacillus Polymyxa, An Enzyme With Increased
Thermoresistance
Length = 447
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 218 KELGLVQARWK------FVNADECLMTRLQEMSLDYHFSVEQEVGSSTCQFFGFNGTAGV 271
KELG+ R+ F N D + + LDY+ V + + + F T
Sbjct: 68 KELGIRTYRFSVSWPRIFPNGD----GEVNQKGLDYYHRVVDLLNDNGIEPFC---TLYH 120
Query: 272 WRI-QAIEDAGGWKDRTTVE 290
W + QA++DAGGW +R T++
Sbjct: 121 WDLPQALQDAGGWGNRRTIQ 140
>pdb|1BGA|A Chain A, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|B Chain B, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|C Chain C, Beta-Glucosidase A From Bacillus Polymyxa
pdb|1BGA|D Chain D, Beta-Glucosidase A From Bacillus Polymyxa
Length = 447
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 218 KELGLVQARWK------FVNADECLMTRLQEMSLDYHFSVEQEVGSSTCQFFGFNGTAGV 271
KELG+ R+ F N D + + LDY+ V + + + F T
Sbjct: 68 KELGIRTYRFSVSWPRIFPNGD----GEVNQEGLDYYHRVVDLLNDNGIEPFC---TLYH 120
Query: 272 WRI-QAIEDAGGWKDRTTVE 290
W + QA++DAGGW +R T++
Sbjct: 121 WDLPQALQDAGGWGNRRTIQ 140
>pdb|1BGG|A Chain A, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|B Chain B, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|C Chain C, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
pdb|1BGG|D Chain D, Glucosidase A From Bacillus Polymyxa Complexed With
Gluconate
Length = 448
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 218 KELGLVQARWK------FVNADECLMTRLQEMSLDYHFSVEQEVGSSTCQFFGFNGTAGV 271
KELG+ R+ F N D + + LDY+ V + + + F T
Sbjct: 69 KELGIRTYRFSVSWPRIFPNGD----GEVNQEGLDYYHRVVDLLNDNGIEPFC---TLYH 121
Query: 272 WRI-QAIEDAGGWKDRTTVE 290
W + QA++DAGGW +R T++
Sbjct: 122 WDLPQALQDAGGWGNRRTIQ 141
>pdb|1UYQ|A Chain A, Mutated B-Glucosidase A From Paenibacillus Polymyxa
Showing Increased Stability
Length = 447
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 14/80 (17%)
Query: 218 KELGLVQARWK------FVNADECLMTRLQEMSLDYHFSVEQEVGSSTCQFFGFNGTAGV 271
KELG+ R+ F N D + + LDY+ V + + + F T
Sbjct: 68 KELGIRTYRFSVSWPRIFPNGD----GEVNQEGLDYYHRVVDLLNDNGIEPFC---TLYH 120
Query: 272 WRI-QAIEDAGGWKDRTTVE 290
W + QA++DAGGW +R T++
Sbjct: 121 WDLPQALQDAGGWGNRRTIQ 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,129,824
Number of Sequences: 62578
Number of extensions: 591649
Number of successful extensions: 1365
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 16
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)