BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044522
(113 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIE 90
RGGFG VYKG L DG +VAVK K QF +E E++S A HR+L+ L G+C+
Sbjct: 40 RGGFGKVYKGRLADGXLVAVKRLK-EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT 98
Query: 91 IVW-LLVYGYPCNGSL 105
LLVY Y NGS+
Sbjct: 99 PTERLLVYPYMANGSV 114
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIE 90
RGGFG VYKG L DG +VAVK K QF +E E++S A HR+L+ L G+C+
Sbjct: 48 RGGFGKVYKGRLADGTLVAVKRLK-EERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMT 106
Query: 91 IV-WLLVYGYPCNGSL 105
LLVY Y NGS+
Sbjct: 107 PTERLLVYPYMANGSV 122
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG VYKG LRDG VA+K S +Q +F +E E LS +H LV L+G+C E
Sbjct: 50 GVFGKVYKGVLRDGAKVALKRRTPES--SQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107
Query: 92 -VWLLVYGYPCNGSLDHNLCGPN 113
+L+Y Y NG+L +L G +
Sbjct: 108 NEMILIYKYMENGNLKRHLYGSD 130
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG VYKG LRDG VA+K S +Q +F +E E LS +H LV L+G+C E
Sbjct: 50 GVFGKVYKGVLRDGAKVALKRRTPES--SQGIEEFETEIETLSFCRHPHLVSLIGFCDER 107
Query: 92 -VWLLVYGYPCNGSLDHNLCGPN 113
+L+Y Y NG+L +L G +
Sbjct: 108 NEMILIYKYMENGNLKRHLYGSD 130
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAF--QFISEDEILSCAQHRSLVVLVGYC 88
GGFG VYKG + + VAVK M QF E ++++ QH +LV L+G+
Sbjct: 41 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS 99
Query: 89 IEIVWL-LVYGYPCNGSL 105
+ L LVY Y NGSL
Sbjct: 100 SDGDDLCLVYVYMPNGSL 117
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAF--QFISEDEILSCAQHRSLVVLVGYC 88
GGFG VYKG + + VAVK M QF E ++++ QH +LV L+G+
Sbjct: 41 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS 99
Query: 89 IEIVWL-LVYGYPCNGSL 105
+ L LVY Y NGSL
Sbjct: 100 SDGDDLCLVYVYMPNGSL 117
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAF--QFISEDEILSCAQHRSLVVLVGYC 88
GGFG VYKG + + VAVK M QF E ++++ QH +LV L+G+
Sbjct: 35 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS 93
Query: 89 IEIVWL-LVYGYPCNGSL 105
+ L LVY Y NGSL
Sbjct: 94 SDGDDLCLVYVYMPNGSL 111
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 26 GKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAF--QFISEDEILSCAQHRSLVV 83
G GGFG VYKG + + VAVK M QF E ++ + QH +LV
Sbjct: 27 GNKXGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVE 85
Query: 84 LVGYCIEIVWL-LVYGYPCNGSL 105
L+G+ + L LVY Y NGSL
Sbjct: 86 LLGFSSDGDDLCLVYVYXPNGSL 108
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 25 LGKTPRRGGFGAVYKGALR--DGQV--VAVKHHKVMSACAQAAFQFISEDEILSCAQHRS 80
LGK G FG+V +G L+ DG VAVK K+ ++ + +F+SE + H +
Sbjct: 38 LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN 97
Query: 81 LVVLVGYCIEI 91
++ L+G CIE+
Sbjct: 98 VIRLLGVCIEM 108
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 25 LGKTPRRGGFGAVYKGALR-DGQVVAVKH-HKVMSACAQAAFQFISEDEILSCAQHRSLV 82
LG+ RG FG V+ G LR D +VAVK + + +A +F+ E IL H ++V
Sbjct: 118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA--KFLQEARILKQYSHPNIV 175
Query: 83 VLVGYC-----IEIVWLLVYG 98
L+G C I IV LV G
Sbjct: 176 RLIGVCTQKQPIYIVMELVQG 196
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Query: 25 LGKTPRRGGFGAVYKGALR-DGQVVAVKH-HKVMSACAQAAFQFISEDEILSCAQHRSLV 82
LG+ RG FG V+ G LR D +VAVK + + +A +F+ E IL H ++V
Sbjct: 118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKA--KFLQEARILKQYSHPNIV 175
Query: 83 VLVGYC-----IEIVWLLVYG 98
L+G C I IV LV G
Sbjct: 176 RLIGVCTQKQPIYIVMELVQG 196
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 32 GGFGAVYKG------ALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
G FG V+ +D +VAVK K S A+ FQ E E+L+ QH+ +V
Sbjct: 29 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQ--REAELLTMLQHQHIVRFF 86
Query: 86 GYCIE-IVWLLVYGYPCNGSLDHNLC--GPN 113
G C E L+V+ Y +G L+ L GP+
Sbjct: 87 GVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD 117
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 32 GGFGAVYKG------ALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
G FG V+ +D +VAVK K S A+ FQ E E+L+ QH+ +V
Sbjct: 23 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQ--REAELLTMLQHQHIVRFF 80
Query: 86 GYCIE-IVWLLVYGYPCNGSLDHNLC--GPN 113
G C E L+V+ Y +G L+ L GP+
Sbjct: 81 GVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD 111
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 32 GGFGAVYKG------ALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
G FG V+ +D +VAVK K S A+ FQ E E+L+ QH+ +V
Sbjct: 52 GAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQ--REAELLTMLQHQHIVRFF 109
Query: 86 GYCIE-IVWLLVYGYPCNGSLDHNLC--GPN 113
G C E L+V+ Y +G L+ L GP+
Sbjct: 110 GVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD 140
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 11 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 69 FMGYSTKPQLAIVTQWCEGSSLYHHL 94
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 11 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 69 FMGYSTKPQLAIVTQWCEGSSLYHHL 94
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 16 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 73
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 74 FMGYSTKPQLAIVTQWCEGSSLYHHL 99
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 15 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 72
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 73 FMGYSTKPQLAIVTQWCEGSSLYHHL 98
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 16 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 73
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 74 FMGYSTKPQLAIVTQWCEGSSLYHHL 99
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 13 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 70
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 71 FMGYSTKPQLAIVTQWCEGSSLYHHL 96
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 39 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 96
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 97 FMGYSTKPQLAIVTQWCEGSSLYHHL 122
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 31 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 88
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 89 FMGYSTKPQLAIVTQWCEGSSLYHHL 114
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 38 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 95
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 96 FMGYSTKPQLAIVTQWCEGSSLYHHL 121
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 27 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 85 FMGYSTKPQLAIVTQWCEGSSLYHHL 110
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 39 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 96
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY + +V + SL H+L
Sbjct: 97 FMGYSTKPQLAIVTQWCEGSSLYHHL 122
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 11 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 68
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY +V + SL H+L
Sbjct: 69 FMGYSTAPQLAIVTQWCEGSSLYHHL 94
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 24 TLGKTPRRGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVV 83
T+G+ G FG VYKG VAVK V + Q F +E +L +H ++++
Sbjct: 27 TVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILL 84
Query: 84 LVGYCIEIVWLLVYGYPCNGSLDHNL 109
+GY +V + SL H+L
Sbjct: 85 FMGYSTAPQLAIVTQWCEGSSLYHHL 110
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 RGGFGAVYKGAL-RDGQVVAVKHHKVMSACAQAAF-----QFISEDEILSCAQHRSLVVL 84
+GGFG V+KG L +D VVA+K + + + +F E I+S H ++V L
Sbjct: 29 KGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKL 88
Query: 85 VGYCIEIVWLLVYGYPCNGSLDHNL 109
G +++ PC G L H L
Sbjct: 89 YGLMHNPPRMVMEFVPC-GDLYHRL 112
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 20 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 76
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 77 PIYIITEYMENGSLVDFLKTPS 98
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 34 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 90
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 91 PIYIITEYMENGSLVDFLKTPS 112
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 32 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 88
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 89 PIYIITEYMENGSLVDFLKTPS 110
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 RGGFGAVYKGAL-RDGQVVAVKHHKVMSACAQAAF-----QFISEDEILSCAQHRSLVVL 84
+GGFG V+KG L +D VVA+K + + + +F E I+S H ++V L
Sbjct: 29 KGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKL 88
Query: 85 VGYCIEIVWLLVYGYPCNGSLDHNL 109
G +++ PC G L H L
Sbjct: 89 YGLMHNPPRMVMEFVPC-GDLYHRL 112
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 RGGFGAVYKGAL-RDGQVVAVKHHKVMSACAQAAF-----QFISEDEILSCAQHRSLVVL 84
+GGFG V+KG L +D VVA+K + + + +F E I+S H ++V L
Sbjct: 29 KGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKL 88
Query: 85 VGYCIEIVWLLVYGYPCNGSLDHNL 109
G +++ PC G L H L
Sbjct: 89 YGLMHNPPRMVMEFVPC-GDLYHRL 112
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 30 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 86
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 87 PIYIITEYMENGSLVDFLKTPS 108
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 30 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 86
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 87 PIYIITEYMENGSLVDFLKTPS 108
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 29 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 85
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 86 PIYIITEYMENGSLVDFLKTPS 107
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 25 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 81
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 82 PIYIITEYMENGSLVDFLKTPS 103
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 33 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 89
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 90 PIYIITEYMENGSLVDFLKTPS 111
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 24 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 80
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 81 PIYIITEYMENGSLVDFLKTPS 102
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 26 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 82
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 83 PIYIITEYMENGSLVDFLKTPS 104
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 32 GGFGAVYKGA-LRDGQVVAVK-HHKVMSACA--QAAFQFISEDEILSCAQHRSLVVLVGY 87
G FG VYKG + +G+ V + K+++ +A +F+ E I++ H LV L+G
Sbjct: 49 GAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGV 108
Query: 88 CI 89
C+
Sbjct: 109 CL 110
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 24 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 80
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 81 PIYIITEYMENGSLVDFLKTPS 102
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 32.7 bits (73), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 24 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 80
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 81 PIYIITEYMENGSLVDFLKTPS 102
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 32.7 bits (73), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 19 GQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 75
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 76 PIYIITEYMENGSLVDFLKTPS 97
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG VYKG VAVK KV+ + F +E +L +H ++++ +GY +
Sbjct: 47 GSFGTVYKGKWHGD--VAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD 104
Query: 92 VWLLVYGYPCNGS 104
+V + C GS
Sbjct: 105 NLAIVTQW-CEGS 116
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 32 GGFGAVYKGA-LRDGQVVAVK-HHKVMSACA--QAAFQFISEDEILSCAQHRSLVVLVGY 87
G FG VYKG + +G+ V + K+++ +A +F+ E I++ H LV L+G
Sbjct: 26 GAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGV 85
Query: 88 CI 89
C+
Sbjct: 86 CL 87
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 32.0 bits (71), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 99 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 157
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 158 ICLRSEGSPLVVLPYMKHGDL 178
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 41 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 99
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 100 ICLRSEGSPLVVLPYMKHGDL 120
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 45 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 103
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 104 ICLRSEGSPLVVLPYMKHGDL 124
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 58 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 116
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 117 ICLRSEGSPLVVLPYMKHGDL 137
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 40 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 98
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 99 ICLRSEGSPLVVLPYMKHGDL 119
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 32.0 bits (71), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 40 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 98
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 99 ICLRSEGSPLVVLPYMKHGDL 119
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 38 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 96
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 97 ICLRSEGSPLVVLPYMKHGDL 117
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 39 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 97
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 98 ICLRSEGSPLVVLPYMKHGDL 118
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 32.0 bits (71), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 41 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 99
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 100 ICLRSEGSPLVVLPYMKHGDL 120
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 32.0 bits (71), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 59 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 117
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 118 ICLRSEGSPLVVLPYMKHGDL 138
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 40 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 98
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 99 ICLRSEGSPLVVLPYMKHGDL 119
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 32 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 90
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 91 ICLRSEGSPLVVLPYMKHGDL 111
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 37 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 95
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 96 ICLRSEGSPLVVLPYMKHGDL 116
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 40 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 98
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 99 ICLRSEGSPLVVLPYMKHGDL 119
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 31 RGGFGAVYKG------ALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVL 84
G FG V+ +D +VAVK K S A+ F E E+L+ QH +V
Sbjct: 23 EGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFH--REAELLTNLQHEHIVKF 80
Query: 85 VGYCIE-IVWLLVYGYPCNGSLDHNL--CGPN 113
G C+E ++V+ Y +G L+ L GP+
Sbjct: 81 YGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPD 112
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 38 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 96
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 97 ICLRSEGSPLVVLPYMKHGDL 117
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 31.6 bits (70), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 39 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 97
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 98 ICLRSEGSPLVVLPYMKHGDL 118
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 31 RGGFGAVYKGAL--RDGQVV--AVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
RG FG VY G L DG+ + AVK ++ + + QF++E I+ H +++ L+G
Sbjct: 35 RGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVS-QFLTEGIIMKDFSHPNVLSLLG 93
Query: 87 YCI--EIVWLLVYGYPCNGSL 105
C+ E L+V Y +G L
Sbjct: 94 ICLRSEGSPLVVLPYMKHGDL 114
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 31.2 bits (69), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 31 RGGFGAVYKG------ALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVL 84
G FG V+ +D +VAVK K + A+ FQ E E+L+ QH +V
Sbjct: 25 EGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQ--REAELLTNLQHEHIVKF 82
Query: 85 VGYCIE-IVWLLVYGYPCNGSLDHNLC--GPN 113
G C + ++V+ Y +G L+ L GP+
Sbjct: 83 YGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPD 114
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 19 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 86 GYC 88
G C
Sbjct: 77 GVC 79
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 38 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 86 GYC 88
G C
Sbjct: 96 GVC 98
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 20 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 86 GYC 88
G C
Sbjct: 78 GVC 80
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 24 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 86 GYC 88
G C
Sbjct: 82 GVC 84
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 23 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 86 GYC 88
G C
Sbjct: 81 GVC 83
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 20 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 86 GYC 88
G C
Sbjct: 78 GVC 80
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 18 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 86 GYC 88
G C
Sbjct: 76 GVC 78
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And
Selective Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And
Selective Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 38 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 86 GYC 88
G C
Sbjct: 96 GVC 98
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 27 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 86 GYC 88
G C
Sbjct: 85 GVC 87
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 20 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 86 GYC 88
G C
Sbjct: 78 GVC 80
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 21 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 86 GYC 88
G C
Sbjct: 79 GVC 81
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 25 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 86 GYC 88
G C
Sbjct: 83 GVC 85
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 51 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 86 GYC 88
G C
Sbjct: 109 GVC 111
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 23 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 86 GYC 88
G C
Sbjct: 81 GVC 83
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 23 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 86 GYC 88
G C
Sbjct: 81 GVC 83
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 31 RGGFGAVYK---GALRD--GQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
+G FG+V L+D G+VVAVK K+ + + F E EIL QH ++V
Sbjct: 26 KGNFGSVEMCRYDPLQDNTGEVVAVK--KLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 86 GYC 88
G C
Sbjct: 84 GVC 86
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVL 84
G FG V+ G + VAVK K + QA F+ E ++ QH LV L
Sbjct: 24 GQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA---FLEEANLMKTLQHDKLVRL 73
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVL 84
G FG V+ G + VAVK K + QA F+ E ++ QH LV L
Sbjct: 23 GQFGEVWMGYYNNSTKVAVKTLKPGTMSVQA---FLEEANLMKTLQHDKLVRL 72
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQ-FISEDEILSCAQHRSLVVLVG--YC 88
G FG VYK ++ V+A KV+ ++ + ++ E +IL+ H ++V L+ Y
Sbjct: 48 GAFGKVYKAQNKETSVLAAA--KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY 105
Query: 89 IEIVWLLV 96
+W+L+
Sbjct: 106 ENNLWILI 113
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQ-FISEDEILSCAQHRSLVVLVG--YC 88
G FG VYK ++ V+A KV+ ++ + ++ E +IL+ H ++V L+ Y
Sbjct: 48 GAFGKVYKAQNKETSVLAAA--KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY 105
Query: 89 IEIVWLLV 96
+W+L+
Sbjct: 106 ENNLWILI 113
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQ-FISEDEILSCAQHRSLVVLVG--YC 88
G FG VYK ++ V+A KV+ ++ + ++ E +IL+ H ++V L+ Y
Sbjct: 48 GAFGKVYKAQNKETSVLAAA--KVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY 105
Query: 89 IEIVWLLV 96
+W+L+
Sbjct: 106 ENNLWILI 113
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEI--LSCAQHRSLVVL---- 84
RG +GAVYKG+L D + VAV KV S + FI+E I + +H ++
Sbjct: 23 RGRYGAVYKGSL-DERPVAV---KVFSFANRQ--NFINEKNIYRVPLMEHDNIARFIVGD 76
Query: 85 --VGYCIEIVWLLVYGYPCNGSL 105
V + +LLV Y NGSL
Sbjct: 77 ERVTADGRMEYLLVMEYYPNGSL 99
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active
And Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 35 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 88
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 35 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 88
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 20 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 73
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant
V555r In Complex With Dasatinib
Length = 265
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 20 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 73
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 19 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 72
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 26 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 79
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYC 88
G FG V G R VA+K ++ + + +FI E +++ H LV L G C
Sbjct: 15 GQFGVVKYGKWRGQYDVAIK---MIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVC 68
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G G V+ G VAVK K S A F++E ++ QH+ LV L +
Sbjct: 24 GQAGEVWMGYYNGHTKVAVKSLKQGSMSPDA---FLAEANLMKQLQHQRLVRLYAVVTQE 80
Query: 92 VWLLVYGYPCNGSLDHNLCGPN 113
++ Y NGSL L P+
Sbjct: 81 PIYIITEYMENGSLVDFLKTPS 102
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVGYCIEI 91
G FG V+ VAVK K S +A F++E ++ QH LV L +
Sbjct: 26 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDKLVKLHAVVTKE 82
Query: 92 VWLLVYGYPCNGSL 105
++ + GSL
Sbjct: 83 PIYIITEFMAKGSL 96
>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O05|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complxed With Substrate Plp
pdb|3O06|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O06|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1
pdb|3O07|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|B Chain B, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
pdb|3O07|C Chain C, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase
Snz1 Complexed With Substrate G3p
Length = 291
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 22 ASTLGKTPRRGGFGAVY---KGALRDGQVV-AVKHHKVMSACAQAAFQFISEDEILSCAQ 77
A LG+ RR GA KG G V AVKH + ++ +A Q SED+I A+
Sbjct: 122 AKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAE 181
Query: 78 H-RSLVVLVGYCIEIVWLLVYGYPCNG 103
R V L+ +E L V + G
Sbjct: 182 EMRVPVSLLKDVLEKGKLPVVNFAAGG 208
>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|B Chain B, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|C Chain C, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|D Chain D, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|E Chain E, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
pdb|3FEM|F Chain F, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp
Synthase From Saccharomyces Cerevisiae
Length = 297
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 22 ASTLGKTPRRGGFGAVY---KGALRDGQVV-AVKHHKVMSACAQAAFQFISEDEILSCAQ 77
A LG+ RR GA KG G V AVKH + ++ +A Q SED+I A+
Sbjct: 128 AKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAE 187
Query: 78 H-RSLVVLVGYCIEIVWLLVYGYPCNG 103
R V L+ +E L V + G
Sbjct: 188 EMRVPVSLLKDVLEKGKLPVVNFAAGG 214
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 32 GGFGAVYKGALRDGQ-----VVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLVG 86
G FG VYKG L+ VA+K K Q F+ E I+ H +++ L G
Sbjct: 55 GEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRV-DFLGEAGIMGQFSHHNIIRLEG 113
Query: 87 YCIEI-VWLLVYGYPCNGSLDHNL 109
+ +++ Y NG+LD L
Sbjct: 114 VISKYKPMMIITEYMENGALDKFL 137
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVL 84
G FG V+ VAVK K S +A F++E ++ QH LV L
Sbjct: 199 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDKLVKL 248
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 32 GGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVL 84
G FG V+ VAVK K S +A F++E ++ QH LV L
Sbjct: 193 GQFGEVWMATYNKHTKVAVKTMKPGSMSVEA---FLAEANVMKTLQHDKLVKL 242
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 43 RDGQVVAVKHHKVMSACAQAAFQFISEDEI 72
R G++ A+ H + M C F++ E EI
Sbjct: 186 RAGEITAMAHTRAMEKCRPGMFEYHLEGEI 215
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
G +G VYK G++VA+K ++ + I E +L H ++V L+
Sbjct: 31 EGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLI 85
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 31 RGGFGAVYKGALRDGQVVAVKHHKVMSACAQAAFQFISEDEILSCAQHRSLVVLV 85
G +G VYK G++VA+K ++ + I E +L H ++V L+
Sbjct: 31 EGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLI 85
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine
Threonine Kinase (Pim1) In Complex With A Consensus
Peptide And A Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine
Threonine Kinase (Pim1) In Complex With A Consensus
Peptide And A Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 25.0 bits (53), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 32 GGFGAVYKG-ALRDGQVVAVKH 52
GGFG+VY G + D VA+KH
Sbjct: 48 GGFGSVYSGIRVSDNLPVAIKH 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,100,020
Number of Sequences: 62578
Number of extensions: 95338
Number of successful extensions: 406
Number of sequences better than 100.0: 151
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 151
length of query: 113
length of database: 14,973,337
effective HSP length: 77
effective length of query: 36
effective length of database: 10,154,831
effective search space: 365573916
effective search space used: 365573916
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)