BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044523
         (112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12
 pdb|3G1P|B Chain B, Crystals Structure Of Phnp From E.Coli K-12
 pdb|3P2U|A Chain A, Crystal Structure Of Phnp In Complex With Orthovanadate
 pdb|3P2U|B Chain B, Crystal Structure Of Phnp In Complex With Orthovanadate
          Length = 258

 Score = 29.6 bits (65), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 78  ETANSIVAWLANTVGAAESVLR 99
           ETA+S VAWL++T G  E  L+
Sbjct: 153 ETAHSRVAWLSDTAGLPEKTLK 174


>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
           Calcium Binding Regulator
          Length = 386

 Score = 27.3 bits (59), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 5   SSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISD 43
           S N S S +G  +G L  G+    H  YRN  L  L+SD
Sbjct: 263 SINKSLSALGDVIGALSSGN---QHIPYRNHKLTMLMSD 298


>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 4   SSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAIL----GLLF 59
           S S    S +G    +L+  +L   H  Y+  ++        + L C+  +L      + 
Sbjct: 56  SFSTFEASHMGTDTAILLKDALAAAHARYKPQAMA-------VALTCTAELLQDDPNGIS 108

Query: 60  RQMNISVPVDPLE 72
           R +N+ VPV PLE
Sbjct: 109 RALNLPVPVVPLE 121


>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 4   SSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAIL----GLLF 59
           S S    S +G    +L+  +L   H  Y+  ++        + L C+  +L      + 
Sbjct: 56  SFSTFEASHMGTDTAILLKDALAAAHARYKPQAMA-------VALTCTAELLQDDPNGIS 108

Query: 60  RQMNISVPVDPLE 72
           R +N+ VPV PLE
Sbjct: 109 RALNLPVPVVPLE 121


>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
 pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
           Reductase Catalyzing A Key Reduction For Greening In The
           Dark
          Length = 525

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 4   SSSNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAIL----GLLF 59
           S S    S +G    +L+  +L   H  Y+  ++        + L C+  +L      + 
Sbjct: 56  SFSTFEASHMGTDTAILLKDALAAAHARYKPQAMA-------VALTCTAELLQDDPNGIS 108

Query: 60  RQMNISVPVDPLE 72
           R +N+ VPV PLE
Sbjct: 109 RALNLPVPVVPLE 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,702,677
Number of Sequences: 62578
Number of extensions: 77731
Number of successful extensions: 227
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 6
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)