BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044523
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWH5|RTNLT_ARATH Reticulon-like protein B22 OS=Arabidopsis thaliana GN=RTNLB22 PE=2
SV=1
Length = 164
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 85/101 (84%), Positives = 96/101 (95%)
Query: 12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
E+GKA+G+LI G+LVYYHCAYRN++LLSL SDVFIVLLCSLAILGLLFRQ+N+SVPVDPL
Sbjct: 3 EMGKAMGLLISGTLVYYHCAYRNATLLSLFSDVFIVLLCSLAILGLLFRQLNVSVPVDPL 62
Query: 72 EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
EWQISQ+TA++IVA LANTVGAAE VLRVAATGHDKRLF K
Sbjct: 63 EWQISQDTASNIVARLANTVGAAEGVLRVAATGHDKRLFVK 103
>sp|P0C941|RTNLU_ARATH Reticulon-like protein B23 OS=Arabidopsis thaliana GN=RTNLB23 PE=2
SV=1
Length = 155
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/101 (81%), Positives = 93/101 (92%)
Query: 12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPL 71
E+GKA+G+LI G+LVY+HCA RN++LLSLISDV IVLL SLAILGLLFR +N+SVPVDPL
Sbjct: 3 EMGKAIGLLISGTLVYHHCANRNATLLSLISDVLIVLLSSLAILGLLFRHLNVSVPVDPL 62
Query: 72 EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFFK 112
EWQISQ+TA +IVA LANTVGAAESVLRVAATGHDKRLF K
Sbjct: 63 EWQISQDTACNIVARLANTVGAAESVLRVAATGHDKRLFVK 103
>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1
SV=1
Length = 253
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 9 SRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPV 68
S S +G A + + LV YH LSL+ + I L +L +L MN + P
Sbjct: 80 SASVLGVATAIWVLFELVEYH-------FLSLVCHILIFALAALFLLSNAHAFMNKTPPK 132
Query: 69 DPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLF 110
P E I +E IV+ L N + A +LR A G D + F
Sbjct: 133 IP-EIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKF 173
>sp|Q9Z1K7|APC2_MOUSE Adenomatous polyposis coli protein 2 OS=Mus musculus GN=Apc2 PE=1
SV=1
Length = 2274
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 68 VDPLEWQISQETANSIVAWLANTVGAA 94
+D +EWQ QE ANSIV WL A
Sbjct: 1651 LDSVEWQAIQEGANSIVTWLHQAAAKA 1677
>sp|O95996|APC2_HUMAN Adenomatous polyposis coli protein 2 OS=Homo sapiens GN=APC2 PE=1
SV=1
Length = 2303
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 68 VDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFF 111
+D +EW+ QE ANSIV WL A R A++ D L F
Sbjct: 1681 LDSVEWRAIQEGANSIVTWLHQAAAAT----REASSESDSILSF 1720
>sp|Q9UWV6|TSR3_SULSO Probable ribosome biogenesis protein SSO0551 OS=Sulfolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 /
P2) GN=SSO0551 PE=3 SV=2
Length = 166
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 1 MGCSSSNSSRSEVGKALG------VLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAI 54
+ S +N+S+SE G +L G+ ++Y AY+ SS+ +LI+ ++IV AI
Sbjct: 62 VDTSWNNTSQSEFKNIRGEHRRIPILFAGNPIHYGIAYKLSSIEALIATLYIVDEVEEAI 121
>sp|B1VA59|SYE_PHYAS Glutamate--tRNA ligase OS=Phytoplasma australiense GN=gltX PE=3
SV=1
Length = 448
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 26 VYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVA 85
+Y+H +N+SL + C+L++L L + ++N+ V +E N I+A
Sbjct: 341 LYHHFFDKNTSLSEEVEQFLKKHDCALSVLTLFYHKLNLVV--------FEKEAINPIIA 392
Query: 86 WLANTVGAAES----VLRVAAT 103
+A + + +LR+ AT
Sbjct: 393 EIAQNMKINKKNLFVILRIGAT 414
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 10 RSEVGKALGVLICGSLVYYHCAYR-----NSSLLSLISDVFIVLLCSLAI 54
++E GK + + + G Y++C Y+ NS + SL++ I + CS +I
Sbjct: 121 KTECGKKVCINVFGQNSYFYCEYQCKKELNSRICSLLNSSEIKMSCSFSI 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,454,215
Number of Sequences: 539616
Number of extensions: 1050034
Number of successful extensions: 3707
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3701
Number of HSP's gapped (non-prelim): 13
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)