Query 044523
Match_columns 112
No_of_seqs 101 out of 165
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:03:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044523.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044523hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 99.9 5.9E-23 1.3E-27 161.5 8.6 98 15-112 54-154 (230)
2 PF02453 Reticulon: Reticulon; 99.3 6.3E-15 1.4E-19 106.3 -7.0 99 13-112 10-114 (169)
3 COG1458 Predicted DNA-binding 79.6 3.4 7.4E-05 32.9 4.3 47 54-101 72-118 (221)
4 PF09150 Carot_N: Orange carot 71.3 9.1 0.0002 29.2 4.5 52 52-103 101-153 (159)
5 TIGR02865 spore_II_E stage II 65.6 65 0.0014 29.6 9.6 89 10-103 236-328 (764)
6 PF14965 BRI3BP: Negative regu 63.6 24 0.00052 27.4 5.5 44 24-67 76-127 (177)
7 TIGR03875 RNA_lig_partner RNA 59.9 11 0.00023 30.0 3.1 40 62-102 76-115 (206)
8 PF07406 NICE-3: NICE-3 protei 57.4 39 0.00086 26.0 5.8 62 32-102 8-73 (186)
9 PRK04358 hypothetical protein; 56.3 13 0.00029 29.6 3.1 40 62-102 80-119 (217)
10 KOG2719 Metalloprotease [Gener 55.3 1.1E+02 0.0024 26.7 8.8 71 13-86 158-229 (428)
11 PF13994 PgaD: PgaD-like prote 55.2 75 0.0016 22.8 6.7 27 44-70 70-98 (138)
12 PRK11068 phosphatidylglyceroph 54.8 77 0.0017 24.1 6.9 72 6-87 23-97 (164)
13 cd06891 PX_Vps17p The phosphoi 48.7 50 0.0011 24.4 5.0 43 53-96 75-123 (140)
14 PRK11875 psbT photosystem II r 39.6 56 0.0012 18.7 3.1 12 59-70 19-30 (31)
15 cd06890 PX_Bem1p The phosphoin 39.0 32 0.0007 23.8 2.6 49 63-111 59-109 (112)
16 cd07294 PX_SNX12 The phosphoin 39.0 63 0.0014 23.4 4.2 55 55-111 53-120 (132)
17 PF06455 NADH5_C: NADH dehydro 38.9 58 0.0013 23.3 4.0 40 17-56 39-78 (181)
18 PF08745 UPF0278: UPF0278 fami 37.8 11 0.00023 29.9 0.0 46 55-101 69-114 (205)
19 CHL00031 psbT photosystem II p 37.4 56 0.0012 18.9 2.9 12 59-70 19-30 (33)
20 PF15190 DUF4583: Domain of un 36.9 45 0.00098 24.7 3.1 28 13-40 10-38 (128)
21 PRK00962 hypothetical protein; 36.1 23 0.00049 27.2 1.5 46 48-94 44-100 (165)
22 PRK14859 tatA twin arginine tr 35.9 83 0.0018 20.4 3.9 20 42-70 7-26 (63)
23 PF12270 Cyt_c_ox_IV: Cytochro 33.8 1.8E+02 0.004 21.6 6.0 44 31-78 34-77 (137)
24 TIGR01197 nramp NRAMP (natural 33.1 3E+02 0.0065 23.2 9.0 74 15-91 113-195 (390)
25 PF11444 DUF2895: Protein of u 32.1 94 0.002 24.5 4.4 47 47-94 24-77 (199)
26 PF06055 ExoD: Exopolysacchari 30.7 2.4E+02 0.0052 21.4 8.0 55 37-99 53-111 (187)
27 PRK01833 tatA twin arginine tr 30.1 1.3E+02 0.0028 20.1 4.3 19 43-70 8-26 (74)
28 PF07331 TctB: Tripartite tric 29.9 1.9E+02 0.004 19.9 7.4 56 12-67 71-141 (141)
29 PF11547 E3_UbLigase_EDD: E3 u 29.7 37 0.00079 21.5 1.4 18 67-85 1-18 (53)
30 PF11460 DUF3007: Protein of u 29.5 2.1E+02 0.0045 20.5 5.4 52 14-65 8-61 (104)
31 KOG2719 Metalloprotease [Gener 28.8 2.5E+02 0.0055 24.6 6.9 59 43-101 10-80 (428)
32 COG3523 IcmF Type VI protein s 28.6 2.4E+02 0.0052 27.8 7.2 85 26-110 30-121 (1188)
33 PRK03554 tatA twin arginine tr 28.1 1.4E+02 0.003 20.8 4.2 20 42-70 7-26 (89)
34 PRK00442 tatA twin arginine tr 28.0 1.3E+02 0.0029 20.9 4.1 39 42-104 7-45 (92)
35 PF07332 DUF1469: Protein of u 27.8 2E+02 0.0043 19.5 9.3 9 77-85 105-113 (121)
36 KOG1622 GMP synthase [Nucleoti 27.1 58 0.0012 29.2 2.7 38 66-104 507-544 (552)
37 TIGR01411 tatAE twin arginine- 27.0 1.5E+02 0.0033 17.8 4.0 19 43-70 6-24 (47)
38 KOG1484 Putative Zn2+ transpor 26.6 2.5E+02 0.0053 24.1 6.2 49 22-70 223-275 (354)
39 KOG3808 Uncharacterized conser 26.1 50 0.0011 22.1 1.7 15 64-79 25-39 (74)
40 TIGR03746 conj_TIGR03746 integ 26.0 3E+02 0.0065 21.8 6.3 25 69-94 54-78 (202)
41 COG4129 Predicted membrane pro 26.0 2.4E+02 0.0053 23.5 6.1 46 12-57 57-103 (332)
42 PRK01470 tatA twin arginine tr 25.8 1.6E+02 0.0036 18.2 3.9 19 43-70 7-25 (51)
43 PF02544 Steroid_dh: 3-oxo-5-a 25.1 1E+02 0.0022 22.2 3.4 31 28-58 90-126 (150)
44 PF06143 Baculo_11_kDa: Baculo 25.1 88 0.0019 21.5 2.8 26 36-61 35-60 (84)
45 PRK01614 tatE twin arginine tr 24.7 1.8E+02 0.0039 20.1 4.2 38 42-103 7-44 (85)
46 COG2406 Protein distantly rela 24.4 2.8E+02 0.006 21.4 5.6 50 59-109 88-137 (172)
47 PRK02958 tatA twin arginine tr 24.3 1.9E+02 0.004 19.3 4.2 19 43-70 8-26 (73)
48 TIGR03382 GC_trans_RRR Myxococ 24.2 1.3E+02 0.0029 16.3 3.0 6 2-7 1-6 (27)
49 PF06081 DUF939: Bacterial pro 24.2 2.7E+02 0.0059 19.8 5.7 32 12-43 51-82 (141)
50 PF04688 Phage_holin: Phage ly 23.6 1.8E+02 0.0039 17.6 4.2 18 67-88 3-20 (47)
51 PF04608 PgpA: Phosphatidylgly 23.4 3E+02 0.0065 20.0 6.6 23 63-85 61-83 (143)
52 PRK13825 conjugal transfer pro 23.4 3.9E+02 0.0086 22.5 7.0 24 46-73 165-188 (388)
53 PRK04561 tatA twin arginine tr 22.5 2.5E+02 0.0055 18.9 4.6 14 43-56 8-21 (75)
54 KOG3229 Vacuolar sorting prote 22.4 2E+02 0.0043 23.2 4.7 39 61-105 3-41 (227)
55 PF06703 SPC25: Microsomal sig 22.2 2.3E+02 0.005 20.5 4.8 46 13-58 32-79 (162)
56 KOG3966 p53-mediated apoptosis 22.1 5E+02 0.011 22.1 7.4 44 48-98 157-205 (360)
57 PRK04598 tatA twin arginine tr 22.1 2.1E+02 0.0045 19.5 4.1 14 43-56 8-21 (81)
58 cd07293 PX_SNX3 The phosphoino 21.8 2.1E+02 0.0046 20.2 4.4 55 56-111 52-118 (123)
59 PF11712 Vma12: Endoplasmic re 21.7 3.1E+02 0.0067 19.6 6.6 44 14-57 84-134 (142)
60 cd06894 PX_SNX3_like The phosp 21.6 2.5E+02 0.0054 19.7 4.7 55 55-111 51-118 (123)
61 PF04783 DUF630: Protein of un 21.3 43 0.00092 21.6 0.6 9 1-9 1-9 (60)
62 PF02416 MttA_Hcf106: mttA/Hcf 21.2 1.6E+02 0.0034 18.1 3.2 20 42-70 4-23 (53)
63 TIGR03348 VI_IcmF type VI secr 20.6 5.9E+02 0.013 24.7 8.1 21 85-105 84-104 (1169)
64 COG0634 Hpt Hypoxanthine-guani 20.5 1.5E+02 0.0033 23.0 3.6 29 66-95 4-32 (178)
65 COG1457 CodB Purine-cytosine p 20.1 4E+02 0.0086 23.3 6.4 45 15-62 132-176 (442)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=5.9e-23 Score=161.54 Aligned_cols=98 Identities=23% Similarity=0.278 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC--CCCCccccCHHHHHHHHHHHHHHH
Q 044523 15 KALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNI-SVP--VDPLEWQISQETANSIVAWLANTV 91 (112)
Q Consensus 15 ~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~n~-~~P--~iP~e~~isEe~v~~iA~~l~~~i 91 (112)
+..++++++|++|++||..+|+++|++|+++++++.++|.|+++..++|| +.| ++|.|+++|||.+++.|.+++.++
T Consensus 54 ~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~i 133 (230)
T KOG1792|consen 54 KSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEI 133 (230)
T ss_pred cceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999 677 799899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcccccC
Q 044523 92 GAAESVLRVAATGHDKRLFFK 112 (112)
Q Consensus 92 N~~l~~l~dIA~GkD~klFlk 112 (112)
|+.++.+||||+|||++.|+|
T Consensus 134 n~~l~~l~~ia~~~d~~~~lk 154 (230)
T KOG1792|consen 134 NQALSELRDIALGRDLKDFLK 154 (230)
T ss_pred HHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999875
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=99.34 E-value=6.3e-15 Score=106.26 Aligned_cols=99 Identities=26% Similarity=0.251 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCCCCccccCHHHHHHHHHH
Q 044523 13 VGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISV------PVDPLEWQISQETANSIVAW 86 (112)
Q Consensus 13 ~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~n~~~------P~iP~e~~isEe~v~~iA~~ 86 (112)
+=+...++++++++|++|...+|+++|++|+++++.+.+.++|....+++++++ |+.+ +.++|||.+++++..
T Consensus 10 ~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 88 (169)
T PF02453_consen 10 PKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDY-DLEISEERVERLADS 88 (169)
T ss_dssp -------------------------------------------THCCCTCCHHHHCTTHHHHCH-HHHHCCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccc-cccccHHHHHHHHHH
Confidence 345567889999999999999999999999999999999999999999999988 8888 889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccC
Q 044523 87 LANTVGAAESVLRVAATGHDKRLFFK 112 (112)
Q Consensus 87 l~~~iN~~l~~l~dIA~GkD~klFlk 112 (112)
++..+|..+..+|++..|+|.+.++|
T Consensus 89 ~~~~~n~~~~~~~~l~~~~~~~~~l~ 114 (169)
T PF02453_consen 89 VAEWINSVLSWLRRLVFGEDPKKSLK 114 (169)
T ss_dssp CCCCCCHHHHHHHCCCHCT-TTGGG-
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 99999999999999999999999875
No 3
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=79.57 E-value=3.4 Score=32.94 Aligned_cols=47 Identities=13% Similarity=0.054 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 54 ILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVA 101 (112)
Q Consensus 54 lwsn~a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dI 101 (112)
+|+.+..-+-+.+|+-- |+.||-+.+.+-...+|.++|+++.+..+-
T Consensus 72 ~~~ki~twivkKtPnry-evkiPa~ifyeyV~diR~RinkGlRvAE~~ 118 (221)
T COG1458 72 VIAKIETWIVKKTPNRY-EVKIPAAIFYEYVEDIRERINKGLRVAEEA 118 (221)
T ss_pred HHHhhheeeEecCCCce-eecCcHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45666666677888888 999999999999999999999999988764
No 4
>PF09150 Carot_N: Orange carotenoid protein, N-terminal ; InterPro: IPR015233 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Orange carotenoid-binding proteins (OCP) were first identified in cyanobacterial species, where they occur associated with phycobilisome in the cellular thylakoid membrane. These proteins function in photoprotection, and are essential for inhibiting white and blue-green light non-photochemical quenching (NPQ) [, ]. Carotenoids improve the photoprotectant activity by broadening OCP's absorption spectrum and facilitating the dissipation of absorbed energy. OCP acts as a homodimer, and binds one molecule of carotenoid (3'-hydroxyechinenone) and one chloride ion per subunit, where the carotenoid binding site is lined with a striking number of methionine residues. The carotenoid 3'-hydroxyechinenone is not found in higher plants. OCP has two domains: an N-terminal helical domain and a C-terminal domain that resembles a NTF2 (nuclear transport factor 2) domain. OCP can be proteolytically cleaved into a red form (RCP), which lacks 15 residues from the N terminus and approximately 150 residues from the C terminus []. This entry represents the N-terminal domain found predominantly in prokaryotic orange carotenoid proteins and related carotenoid-binding proteins. It adopts an alpha-helical structure consisting of two four-helix bundles [].; GO: 0031404 chloride ion binding, 0016037 light absorption, 0030089 phycobilisome; PDB: 3MG3_B 3MG1_A 3MG2_A 1M98_A.
Probab=71.28 E-value=9.1 Score=29.25 Aligned_cols=52 Identities=21% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhCC-CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044523 52 LAILGLLFRQMNI-SVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAAT 103 (112)
Q Consensus 52 LFlwsn~a~~~n~-~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~ 103 (112)
|-+|--++..+.. .+=|||...++|++.-.-+...=.-..++-..++|+++.
T Consensus 101 L~fWY~Lae~M~~G~VipvP~~Y~ls~~a~~vl~~I~~Ldf~QQItvlR~~V~ 153 (159)
T PF09150_consen 101 LGFWYQLAEGMEQGTVIPVPSGYQLSENANEVLEAIKQLDFEQQITVLRNIVV 153 (159)
T ss_dssp HHHHHHHHHHHHTTSS--S-TT----HHHHHHHHHHHCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEecCCCCCCcCHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence 6788888888888 899999888999998766666656678999999999875
No 5
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=65.64 E-value=65 Score=29.60 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=48.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH----HHHHHHhhCCCCCCCCCccccCHHHHHHHHH
Q 044523 10 RSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAI----LGLLFRQMNISVPVDPLEWQISQETANSIVA 85 (112)
Q Consensus 10 ~~~~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFl----wsn~a~~~n~~~P~iP~e~~isEe~v~~iA~ 85 (112)
.+|.|-+++-+++..++ .++--..+.+...+--+++-.++.+.+ +.+.++.++.+.. +.+..|+..+++-.
T Consensus 236 ~gK~g~~~g~~l~~~il-~~y~~~~~~~~~~~~e~~ia~~lFll~P~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 310 (764)
T TIGR02865 236 LGKIGTGIGYLVGFLIL-AFYTQGSVAFSLALYEALIATLLFLLIPNKIYKKLERYLDGERK----QPDLQEDYMRKVRE 310 (764)
T ss_pred CCcceeeHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHHHHHhhHHHHHHHHhhCCCchh----hhhhhHHHHHHHHH
Confidence 34666666666665444 333223444444344444444444433 3344444432222 33445666677777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 044523 86 WLANTVGAAESVLRVAAT 103 (112)
Q Consensus 86 ~l~~~iN~~l~~l~dIA~ 103 (112)
....++++.-+++++++.
T Consensus 311 ~~~~rl~~~a~~~~~Ls~ 328 (764)
T TIGR02865 311 IAAEKLEEFSEVFRELSN 328 (764)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 788888888888888753
No 6
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=63.64 E-value=24 Score=27.42 Aligned_cols=44 Identities=23% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCchHHHHHHHHHHHH--------HHHHHHHHHHHhhCCCCC
Q 044523 24 SLVYYHCAYRNSSLLSLISDVFIVLL--------CSLAILGLLFRQMNISVP 67 (112)
Q Consensus 24 T~iW~lFE~~~Y~flSl~c~vLll~l--------~iLFlwsn~a~~~n~~~P 67 (112)
.+.|..-...+|.|+|++-+.++-++ +.+|+|+...-.-.++.|
T Consensus 76 ~llw~~~aL~~YW~LSllLgl~~~lLgR~fW~lkv~lfl~~f~~Il~~~~~~ 127 (177)
T PF14965_consen 76 VLLWGAVALLAYWFLSLLLGLLFALLGRVFWLLKVVLFLLSFVYILQKYEGP 127 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 66899999999999999988887766 788888888655444433
No 7
>TIGR03875 RNA_lig_partner RNA ligase partner, MJ_0950 family. This uncharacterized protein family is found almost perfectly in the same set of genomes as the Pab1020 family described by model TIGR01209. These pairs are found mostly in Archaea, but also in a few bacteria (e.g. Alkalilimnicola ehrlichei MLHE-1, Aquifex aeolicus). While the partner protein has been described as homodimeric ligase that has RNA circularization activity, the function of this protein (also called UPF0278) is unknown.
Probab=59.91 E-value=11 Score=29.99 Aligned_cols=40 Identities=13% Similarity=0.043 Sum_probs=34.0
Q ss_pred hCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 62 MNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAA 102 (112)
Q Consensus 62 ~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA 102 (112)
+-+.+|+-- |+.||-+.+.+-...+|.++|+++.+..+-.
T Consensus 76 v~~KsP~ry-e~~IPA~i~ye~I~e~R~RInkGLRVAEe~v 115 (206)
T TIGR03875 76 VVKKSPNRY-EVKIPAEIFYEYIEEVRERIDKGLRVAEEHV 115 (206)
T ss_pred EEEcCCCee-eeeccHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 344677777 8899999999999999999999999987643
No 8
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=57.37 E-value=39 Score=26.03 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=40.6
Q ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHH----HHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 32 YRNSSLLSLISDVFIVLLCSLAILGLL----FRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAA 102 (112)
Q Consensus 32 ~~~Y~flSl~c~vLll~l~iLFlwsn~----a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA 102 (112)
++|.|.+=++....+++ +++|||++= .++-.|..|.+|.-.--|++ ++.+|++-++...+|.
T Consensus 8 lsGv~vvlv~a~g~l~~-vllfIfaKRQI~Rf~lrsrrgphvp~G~~a~K~--------lk~eIe~rL~~v~~i~ 73 (186)
T PF07406_consen 8 LSGVNVVLVIAYGSLVF-VLLFIFAKRQIMRFALRSRRGPHVPVGHGAPKS--------LKEEIERRLSRVQKIK 73 (186)
T ss_pred ccceeeehhhHHHHHHH-HHHHHHHHHHHHHHHHhccCCCcccccCCCcHh--------HHHHHHHHHhhhhhee
Confidence 45666665555544433 667788765 55667789999955566655 5667777777777665
No 9
>PRK04358 hypothetical protein; Provisional
Probab=56.32 E-value=13 Score=29.62 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=33.9
Q ss_pred hCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 62 MNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAA 102 (112)
Q Consensus 62 ~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA 102 (112)
+-+.+|.-= |+.||-+.+.+-...+|.++|+++.+..+-.
T Consensus 80 i~~KsP~ry-~v~IPA~i~ye~I~~mR~RInkGLRVAEeav 119 (217)
T PRK04358 80 IVKKSPNRY-EIKIPAEIFYEYIEDMRERINKGLRVAEEAV 119 (217)
T ss_pred EEEcCCCce-eeeccHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344667777 8899999999999999999999999987653
No 10
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=55.34 E-value=1.1e+02 Score=26.73 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH-HHhhCCCCCCCCCccccCHHHHHHHHHH
Q 044523 13 VGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLL-FRQMNISVPVDPLEWQISQETANSIVAW 86 (112)
Q Consensus 13 ~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~-a~~~n~~~P~iP~e~~isEe~v~~iA~~ 86 (112)
+|-++..-.++..+|-+.+.--|=++.+--....+.++.+++|+-. +..+||.+| +| +-.+ .|-.+++|++
T Consensus 158 v~~~l~~Pi~~~iv~i~~~~g~yF~i~~w~f~~v~~l~l~ti~p~~i~P~f~K~~P-Le-~g~l-~~~Ie~la~s 229 (428)
T KOG2719|consen 158 VGVVLTIPIVAAIVMILKKFGPYFFIYLWLFYFVLSLLLLTIYPGFIAPLFGKFTP-LE-EGDL-KEKIERLADS 229 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCC-CC-CCch-HHHHHHHHHh
Confidence 4556666677888899999977888888899999999999999999 999999766 44 3333 2334445544
No 11
>PF13994 PgaD: PgaD-like protein
Probab=55.20 E-value=75 Score=22.81 Aligned_cols=27 Identities=15% Similarity=0.030 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHH--HhhCCCCCCCC
Q 044523 44 VFIVLLCSLAILGLLF--RQMNISVPVDP 70 (112)
Q Consensus 44 vLll~l~iLFlwsn~a--~~~n~~~P~iP 70 (112)
++++.-++|.+|+..- ++-++...+.|
T Consensus 70 i~~~~a~~Li~Wa~yn~~Rf~~~~rr~~~ 98 (138)
T PF13994_consen 70 IALVNAVILILWAKYNRLRFRGRRRRRRP 98 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhccCC
Confidence 4455567899999994 55555444433
No 12
>PRK11068 phosphatidylglycerophosphatase A; Provisional
Probab=54.78 E-value=77 Score=24.12 Aligned_cols=72 Identities=11% Similarity=-0.069 Sum_probs=35.5
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHH-HHHHHHHHHHH--HHHHhhCCCCCCCCCccccCHHHHHH
Q 044523 6 SNSSRSEVGKALGVLICGSLVYYHCAYRNSSLLSLISDVF-IVLLCSLAILG--LLFRQMNISVPVDPLEWQISQETANS 82 (112)
Q Consensus 6 ~~~~~~~~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vL-ll~l~iLFlws--n~a~~~n~~~P~iP~e~~isEe~v~~ 82 (112)
+|-....+|.+-++.+ ..+|+++-..++ ....+ +++..++=+|. ..++.. ..+.|.|+.++|-.-.=
T Consensus 23 ~G~~p~APGT~GSl~a--i~~~~~~~~~~~-----~~~~~~~~~~~~iGi~~~~~~~~~~---g~~Dp~~IViDEv~G~~ 92 (164)
T PRK11068 23 SGLSPIVPGTMGSLAA--IPFWYLLTFLPW-----QLYSLVVMLGICIGVYLCHQTAKDM---GVHDHGSIVWDEFIGMW 92 (164)
T ss_pred ccCCCCCChhHHHHHH--HHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCCCeeehhHHHHH
Confidence 3444557787777665 334666522221 11112 11122222333 334444 44666688888876665
Q ss_pred HHHHH
Q 044523 83 IVAWL 87 (112)
Q Consensus 83 iA~~l 87 (112)
++...
T Consensus 93 i~l~~ 97 (164)
T PRK11068 93 ITLMA 97 (164)
T ss_pred HHHHH
Confidence 55543
No 13
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=48.69 E-value=50 Score=24.45 Aligned_cols=43 Identities=23% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHH-HHhhCCCCCCCCCccccC-----HHHHHHHHHHHHHHHHHHHH
Q 044523 53 AILGLL-FRQMNISVPVDPLEWQIS-----QETANSIVAWLANTVGAAES 96 (112)
Q Consensus 53 Flwsn~-a~~~n~~~P~iP~e~~is-----Ee~v~~iA~~l~~~iN~~l~ 96 (112)
+++-.+ ...-+.-+|++| +-.++ +|...+....+..++|+..+
T Consensus 75 ~L~~~L~~~~~~~iVPplP-~k~~~~~~~~~E~~~~rr~~LqrfL~RV~~ 123 (140)
T cd06891 75 KLFKYLNGANPETFVPALP-LPSTSYGSNNEEDARKLKANLQRWFNRVCS 123 (140)
T ss_pred HHHHHHHHHCCCcEeCCCC-CccccCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 444444 445566799999 76664 88888889999999998654
No 14
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=39.60 E-value=56 Score=18.67 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=9.4
Q ss_pred HHhhCCCCCCCC
Q 044523 59 FRQMNISVPVDP 70 (112)
Q Consensus 59 a~~~n~~~P~iP 70 (112)
.+++-|.||+||
T Consensus 19 FAIfFRepPri~ 30 (31)
T PRK11875 19 FAIAFRDPPKID 30 (31)
T ss_pred HhhhccCCCCCC
Confidence 456678999997
No 15
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=39.04 E-value=32 Score=23.81 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=30.9
Q ss_pred CCCCCCCCCcc-cc-CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 044523 63 NISVPVDPLEW-QI-SQETANSIVAWLANTVGAAESVLRVAATGHDKRLFF 111 (112)
Q Consensus 63 n~~~P~iP~e~-~i-sEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~klFl 111 (112)
++.+|++|..+ .. +++...+=-..+-.-+|+.+..-.+|..-.+.+.||
T Consensus 59 ~~~lP~lP~~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff 109 (112)
T cd06890 59 KRILPYLPGPVTDVVNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFF 109 (112)
T ss_pred CCcCCCCCCCccCcchhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHc
Confidence 55688888444 22 455555545556666666666666777777777776
No 16
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=39.03 E-value=63 Score=23.36 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCCCCCCCcccc-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 044523 55 LGLLFRQMNISVPVDPLEWQI-------------SQETANSIVAWLANTVGAAESVLRVAATGHDKRLFF 111 (112)
Q Consensus 55 wsn~a~~~n~~~P~iP~e~~i-------------sEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~klFl 111 (112)
+..+....+..+||+| +=.+ +++.+.+=...+..-+|+.+.- -.+..-.+++.||
T Consensus 53 ~~~L~~~~g~~iPpLP-~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~h-p~l~~~~~l~~FL 120 (132)
T cd07294 53 KNELERDSKIVVPPLP-GKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGH-PLAQNERCLHMFL 120 (132)
T ss_pred HHHHHHcCCCccCCCC-CCceeccccccccccCCCHHHHHHHHHHHHHHHHHHHcC-cccccChHHHHhc
Confidence 3444444677899999 5332 4666666566666666666442 2333444555554
No 17
>PF06455 NADH5_C: NADH dehydrogenase subunit 5 C-terminus; InterPro: IPR010934 This entry represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with IPR001750 from INTERPRO and IPR001516 from INTERPRO. Subunit 5 is the core of the mitochondrial membrane respiratory chain NADH dehydrogenase.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport, 0055114 oxidation-reduction process
Probab=38.90 E-value=58 Score=23.31 Aligned_cols=40 Identities=13% Similarity=0.166 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH
Q 044523 17 LGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILG 56 (112)
Q Consensus 17 ~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlws 56 (112)
.++.+|...-|.+|+..+..+++...+.+.+.+.++-++-
T Consensus 39 ~si~~G~~~~~~~~~~~~~~~l~~~~K~~~l~~~~~g~~l 78 (181)
T PF06455_consen 39 GSIFGGSFLSWLLFPFPSLIFLPFFLKLLPLLIIILGIIL 78 (181)
T ss_pred HHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999998888888777764443
No 18
>PF08745 UPF0278: UPF0278 family; InterPro: IPR022785 This entry contains proteins of the UPF0278 family and proteins containing PIN domains. Members of the UPF0278 family are uncharacterised and about 200 amino acids in length.; PDB: 2LCQ_A.
Probab=37.80 E-value=11 Score=29.91 Aligned_cols=46 Identities=15% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 55 LGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVA 101 (112)
Q Consensus 55 wsn~a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dI 101 (112)
.+.+...+-+..|.-- |+.||-+.+.+-...+|.++|+++.+..+.
T Consensus 69 ~~k~~twvv~KsP~ry-ev~IPA~i~yEyI~emR~RInKGLRVAEea 114 (205)
T PF08745_consen 69 ISKLDTWVVKKSPDRY-EVKIPAEIFYEYIEEMRERINKGLRVAEEA 114 (205)
T ss_dssp -----------------------------------------------
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 3444445556677777 899999999999999999999999988764
No 19
>CHL00031 psbT photosystem II protein T
Probab=37.41 E-value=56 Score=18.90 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=9.7
Q ss_pred HHhhCCCCCCCC
Q 044523 59 FRQMNISVPVDP 70 (112)
Q Consensus 59 a~~~n~~~P~iP 70 (112)
.+++-|.||+||
T Consensus 19 FAI~FRePPri~ 30 (33)
T CHL00031 19 FAIFFREPPKVP 30 (33)
T ss_pred HhheecCCCCCC
Confidence 456778999998
No 20
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=36.92 E-value=45 Score=24.67 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhC-CchHHH
Q 044523 13 VGKALGVLICGSLVYYHCAYRN-SSLLSL 40 (112)
Q Consensus 13 ~g~~~~vL~~aT~iW~lFE~~~-Y~flSl 40 (112)
+|-.+-.++.+.+.+|.||+.+ ||=+++
T Consensus 10 v~v~lyLl~s~~~~yyvFei~~~Yn~laL 38 (128)
T PF15190_consen 10 VGVSLYLLASAAAVYYVFEIHDTYNRLAL 38 (128)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 4566778889999999999987 665554
No 21
>PRK00962 hypothetical protein; Provisional
Probab=36.11 E-value=23 Score=27.25 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH--HHhhCCCCCCC----CCcc-ccC----HHHHHHHHHHHHHHHHHH
Q 044523 48 LLCSLAILGLL--FRQMNISVPVD----PLEW-QIS----QETANSIVAWLANTVGAA 94 (112)
Q Consensus 48 ~l~iLFlwsn~--a~~~n~~~P~i----P~e~-~is----Ee~v~~iA~~l~~~iN~~ 94 (112)
++..+|+.++- .+++|.++|.. - .. -.| |+.+...|..++...|.-
T Consensus 44 v~gg~fiyS~e~~~~lL~v~~~~p~~~~~-~~kaysee~De~vA~~MA~~vr~~l~aD 100 (165)
T PRK00962 44 VVASMFIPSLSGIESLLDIEPPEPDYVYK-YIKAYNEENDLLVAKLMAEALKNKTNCD 100 (165)
T ss_pred eeeeEEEecHHHHHHhcCCCCccccchhc-cccccCcccCHHHHHHHHHHHHHHhCCC
Confidence 35667788887 78999996662 2 23 577 999999999999988753
No 22
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=35.86 E-value=83 Score=20.35 Aligned_cols=20 Identities=20% Similarity=0.519 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 42 SDVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 42 c~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
.+++++++++|.+.+ |.++|
T Consensus 7 ~ElliIlvv~LlvfG---------p~kLP 26 (63)
T PRK14859 7 PELIVILVIVLIVFG---------AGKLP 26 (63)
T ss_pred HHHHHHHHHHHHHhC---------chHHH
Confidence 466777777776653 66888
No 23
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=33.79 E-value=1.8e+02 Score=21.57 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=31.0
Q ss_pred HHhCCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccccCHH
Q 044523 31 AYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQE 78 (112)
Q Consensus 31 E~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~n~~~P~iP~e~~isEe 78 (112)
|+.|.+-+.+ -.+|-+|+..|++-...+. +..|..-| |-||+|.
T Consensus 34 E~~Gt~aL~l--s~~l~~mig~yl~~~~rr~-~~rPED~~-daEI~dg 77 (137)
T PF12270_consen 34 EWVGTVALVL--SGGLALMIGFYLRFTARRI-GPRPEDRE-DAEIADG 77 (137)
T ss_pred CcchHHHHHH--HHHHHHHHHHHHHHHHhhC-CCCCcccc-ccccccC
Confidence 5666655444 4577888888998888765 66666666 7788874
No 24
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=33.14 E-value=3e+02 Score=23.23 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=47.4
Q ss_pred hHHHHHH--HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH------HHhhCC-CCCCCCCccccCHHHHHHHHH
Q 044523 15 KALGVLI--CGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLL------FRQMNI-SVPVDPLEWQISQETANSIVA 85 (112)
Q Consensus 15 ~~~~vL~--~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~------a~~~n~-~~P~iP~e~~isEe~v~~iA~ 85 (112)
.+.+++. .+++++.+....+|..+=-+.-+++..|.+.|+..-. .+.++. =.|++| .. +++....+..
T Consensus 113 ~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~~P~~~~~~~g~~vP~~p-~~--~~~~~~~~va 189 (390)
T TIGR01197 113 LWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCA-VF--GTDGLLQAVG 189 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHheeCCCHHHHhhcccCCCcc-CC--CCchHHHHHH
Confidence 3445554 6667777777899999999999999999999997754 223332 245555 22 3344444554
Q ss_pred HHHHHH
Q 044523 86 WLANTV 91 (112)
Q Consensus 86 ~l~~~i 91 (112)
.+...+
T Consensus 190 iiGttv 195 (390)
T TIGR01197 190 ILGATV 195 (390)
T ss_pred HHhhhh
Confidence 444444
No 25
>PF11444 DUF2895: Protein of unknown function (DUF2895); InterPro: IPR021548 This is a bacterial family of uncharacterised proteins.
Probab=32.14 E-value=94 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhCC-CCCCC------CCccccCHHHHHHHHHHHHHHHHHH
Q 044523 47 VLLCSLAILGLLFRQMNI-SVPVD------PLEWQISQETANSIVAWLANTVGAA 94 (112)
Q Consensus 47 l~l~iLFlwsn~a~~~n~-~~P~i------P~e~~isEe~v~~iA~~l~~~iN~~ 94 (112)
++++..+.|.++-+-+.. -||.+ | .++||++.|...|..+-.++|+.
T Consensus 24 l~~~~~~gw~~aP~~ltih~PPDLrsGstr~-~~eVP~~~VYaFa~yIfQQlN~W 77 (199)
T PF11444_consen 24 LLLLLIIGWMRAPKRLTIHNPPDLRSGSTRK-WWEVPPETVYAFAFYIFQQLNRW 77 (199)
T ss_pred HHHHHHHHHHhCCCceEEECCCccCCCceeE-cccCChHHHHHHHHHHHHHHccc
Confidence 334445667777333333 34433 5 57999999999999999999973
No 26
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=30.70 E-value=2.4e+02 Score=21.43 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcc----ccCHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 37 LLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEW----QISQETANSIVAWLANTVGAAESVLR 99 (112)
Q Consensus 37 flSl~c~vLll~l~iLFlwsn~a~~~n~~~P~iP~e~----~isEe~v~~iA~~l~~~iN~~l~~l~ 99 (112)
=+|.++-+.++++.++ -.+||+.|-+| ++ ++|.+..+++...++....+.-...|
T Consensus 53 G~s~~~g~~i~lia~Q-------m~~Gr~~~WLP-~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~r 111 (187)
T PF06055_consen 53 GVSTVFGLPILLIALQ-------MLLGRRHPWLP-KFLRRRSISREKLRKAVRRLRPWLRRLERLLR 111 (187)
T ss_pred CchHHHHHHHHHHHHH-------HHcCCCCCCCC-hHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555555443 45899999999 65 89999999888888887777766554
No 27
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=30.06 E-value=1.3e+02 Score=20.11 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 43 DVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 43 ~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
++++++++++.+++ +.++|
T Consensus 8 elliIl~i~lllFG---------~kKLP 26 (74)
T PRK01833 8 QLLIIVAIIVLLFG---------TKKLR 26 (74)
T ss_pred HHHHHHHHHHHHhC---------cchHH
Confidence 66777777766654 56788
No 28
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=29.95 E-value=1.9e+02 Score=19.86 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=35.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHH---------------HHHHHHHHHHHHHHHhhCCCCC
Q 044523 12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVF---------------IVLLCSLAILGLLFRQMNISVP 67 (112)
Q Consensus 12 ~~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vL---------------ll~l~iLFlwsn~a~~~n~~~P 67 (112)
+..|...+++...+...++|..||-.-|.+.-.. .-+.....+|.....++|-+.|
T Consensus 71 ~~~~~~~~~~~~~~y~~~~~~lGf~~at~~~~~~~~~~~g~r~~~~~~~~s~~~~~~i~~~F~~~L~v~lP 141 (141)
T PF07331_consen 71 DWKRVLLVLGLLVLYVLLLEYLGFIIATFLFLFAFMLLLGERRWLRLLLISVVFAAVIYFVFAKLLGVPLP 141 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCc
Confidence 4557777777777788889999987766654322 2223445555556666666655
No 29
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=29.67 E-value=37 Score=21.49 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=10.3
Q ss_pred CCCCCccccCHHHHHHHHH
Q 044523 67 PVDPLEWQISQETANSIVA 85 (112)
Q Consensus 67 P~iP~e~~isEe~v~~iA~ 85 (112)
|.+| ..++|||.+.++-.
T Consensus 1 ~~vp-a~~vPedlI~q~q~ 18 (53)
T PF11547_consen 1 PVVP-ASQVPEDLINQAQV 18 (53)
T ss_dssp -----GGGS-HHHHHHHHH
T ss_pred CCCc-cccCCHHHHHHHHH
Confidence 6788 88999999887643
No 30
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.55 E-value=2.1e+02 Score=20.45 Aligned_cols=52 Identities=27% Similarity=0.231 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCchHHH--HHHHHHHHHHHHHHHHHHHHhhCCC
Q 044523 14 GKALGVLICGSLVYYHCAYRNSSLLSL--ISDVFIVLLCSLAILGLLFRQMNIS 65 (112)
Q Consensus 14 g~~~~vL~~aT~iW~lFE~~~Y~flSl--~c~vLll~l~iLFlwsn~a~~~n~~ 65 (112)
+-.+++++.+-+.|..|...|..=++. .+++++++.++-.+-|-..+..++.
T Consensus 8 ~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~glvgW~~sYlfRV~t~~ 61 (104)
T PF11460_consen 8 LIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGLVGWVSSYLFRVVTGK 61 (104)
T ss_pred eecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 445788999999999999999887764 5666555555444445557766664
No 31
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=28.83 E-value=2.5e+02 Score=24.58 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhC----CCCCCCCCcc--ccCHHHHHHHH-----HHHHHHHHHHHHH-HHHH
Q 044523 43 DVFIVLLCSLAILGLLFRQMN----ISVPVDPLEW--QISQETANSIV-----AWLANTVGAAESV-LRVA 101 (112)
Q Consensus 43 ~vLll~l~iLFlwsn~a~~~n----~~~P~iP~e~--~isEe~v~~iA-----~~l~~~iN~~l~~-l~dI 101 (112)
++++..+.+++.|........ +.++..|.|+ +++||+.++.. ....+-+|..++. ++++
T Consensus 10 ~~i~~f~i~~~~~~~yl~~Rq~~~~~~~~~~p~el~~~~~~et~~kar~y~~~k~~f~i~~~~~~~~~~~l 80 (428)
T KOG2719|consen 10 SIILFFSIFLYLFETYLTERQLKVLKRTKLVPKELGGIIDQETFKKARSYERDKSIFSIFNLLLSLVLLLL 80 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchHhhcCCCHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 456677777777877633221 1333345455 99999988763 3444555666655 4444
No 32
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.60 E-value=2.4e+02 Score=27.84 Aligned_cols=85 Identities=11% Similarity=-0.025 Sum_probs=50.4
Q ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccccCHH---HHH----HHHHHHHHHHHHHHHHH
Q 044523 26 VYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQE---TAN----SIVAWLANTVGAAESVL 98 (112)
Q Consensus 26 iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~n~~~P~iP~e~~isEe---~v~----~iA~~l~~~iN~~l~~l 98 (112)
+|.++|+.+|+...-.-.=++..-++.++|.....+.=+..-+.+.+.+..+- .+. .....++.+.-.+...+
T Consensus 30 ~gp~~~~g~~~p~~~~~~R~l~i~~~~~v~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~l 109 (1188)
T COG3523 30 AGPLLEVGDVWPLESLAARLLAIGLIVLVWLLYSTIRLWRARRLSKRLEDEQGRRKAVADEIDAELEELNAQLGEALRTL 109 (1188)
T ss_pred hhhhhhhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhchhhHHHHhcccccccchHHHHHHHHHHHHHH
Confidence 34578999999987666666666667777777666533333333311222111 111 13345677777777888
Q ss_pred HHHHhcCCcccc
Q 044523 99 RVAATGHDKRLF 110 (112)
Q Consensus 99 ~dIA~GkD~klF 110 (112)
|..-.|++-+.|
T Consensus 110 ~r~~~~~~~rr~ 121 (1188)
T COG3523 110 KRRKRGRPGRRY 121 (1188)
T ss_pred HHHHhcCcccch
Confidence 887777765544
No 33
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=28.10 E-value=1.4e+02 Score=20.82 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 42 SDVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 42 c~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
-+++++++++|.+++ +-++|
T Consensus 7 ~eLlIIlvIvLLlFG---------~kKLP 26 (89)
T PRK03554 7 WQLLIIAVIVVLLFG---------TKKLG 26 (89)
T ss_pred HHHHHHHHHHHHHhC---------cchHH
Confidence 367777777777654 55788
No 34
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=27.96 E-value=1.3e+02 Score=20.94 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044523 42 SDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATG 104 (112)
Q Consensus 42 c~vLll~l~iLFlwsn~a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~G 104 (112)
-|++++++++|.+++ +-++| .+...+.+++.-+|+-..+
T Consensus 7 ~elliIlvIvlllFG---------~~KLP---------------elg~~lGk~ik~FKka~~e 45 (92)
T PRK00442 7 KHWIVILVVVVLVFG---------TKKLK---------------NLGSDVGESIKGFRKAMNE 45 (92)
T ss_pred HHHHHHHHHHHHHhC---------cchHH---------------HHHHHHHHHHHHHHHHhcc
Confidence 467777777776654 45788 3345555555566654443
No 35
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=27.77 E-value=2e+02 Score=19.48 Aligned_cols=9 Identities=22% Similarity=0.298 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 044523 77 QETANSIVA 85 (112)
Q Consensus 77 Ee~v~~iA~ 85 (112)
+++.+++..
T Consensus 105 ~~t~~~l~~ 113 (121)
T PF07332_consen 105 EETIAELKE 113 (121)
T ss_pred HHHHHHHHH
Confidence 555444433
No 36
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=27.08 E-value=58 Score=29.23 Aligned_cols=38 Identities=18% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044523 66 VPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATG 104 (112)
Q Consensus 66 ~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~G 104 (112)
.|-.| -.++|.+++.+++..+.+++-..-.+++|+.+-
T Consensus 507 ~p~~p-g~e~p~k~l~kmvt~I~nkv~GIsRVlyDlTSK 544 (552)
T KOG1622|consen 507 DPATP-GNEFPVKFLLKMVTEICNKVPGISRVLYDLTSK 544 (552)
T ss_pred CCCCC-CccccHHHHHHHHHHHHhcCccHHHHHhhcccC
Confidence 45667 789999999999999999998888999999763
No 37
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=27.03 E-value=1.5e+02 Score=17.85 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 43 DVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 43 ~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
++++++++++.+. -|.++|
T Consensus 6 ElliI~vi~llvf---------Gp~kLP 24 (47)
T TIGR01411 6 EWLIILVVILLLF---------GAKKLP 24 (47)
T ss_pred HHHHHHHHHHHhc---------CchHhH
Confidence 4556666665544 377889
No 38
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=26.62 E-value=2.5e+02 Score=24.14 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH----HHhhCCCCCCCC
Q 044523 22 CGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLL----FRQMNISVPVDP 70 (112)
Q Consensus 22 ~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~----a~~~n~~~P~iP 70 (112)
|..+...+-++-||...--+|-+++-.++++-+.-.. .-++.|.||.+|
T Consensus 223 Gviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLLq~tPp~~~ 275 (354)
T KOG1484|consen 223 GVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILLQRTPPHLE 275 (354)
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 3344556777788888878888888777777665544 668999999998
No 39
>KOG3808 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.11 E-value=50 Score=22.11 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.9
Q ss_pred CCCCCCCCccccCHHH
Q 044523 64 ISVPVDPLEWQISQET 79 (112)
Q Consensus 64 ~~~P~iP~e~~isEe~ 79 (112)
|+.|+.| ++.+||..
T Consensus 25 k~vpr~~-swllseKk 39 (74)
T KOG3808|consen 25 KSVPRFP-SWLLSEKK 39 (74)
T ss_pred hhcccch-HHHHhccc
Confidence 5799999 99999963
No 40
>TIGR03746 conj_TIGR03746 integrating conjugative element protein, PFL_4703 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition. The function is unknown.
Probab=25.97 E-value=3e+02 Score=21.82 Aligned_cols=25 Identities=8% Similarity=0.268 Sum_probs=21.8
Q ss_pred CCCccccCHHHHHHHHHHHHHHHHHH
Q 044523 69 DPLEWQISQETANSIVAWLANTVGAA 94 (112)
Q Consensus 69 iP~e~~isEe~v~~iA~~l~~~iN~~ 94 (112)
.+ .++||.+.|.-.|..+-.++|+.
T Consensus 54 r~-~~eVP~~~VYaFa~yI~QQlNrW 78 (202)
T TIGR03746 54 RK-WWEVPPENVYAFAFYIFQQLNRW 78 (202)
T ss_pred cC-cccCCchhhhhhHHHHHHHHhhc
Confidence 46 67999999999999999999963
No 41
>COG4129 Predicted membrane protein [Function unknown]
Probab=25.95 E-value=2.4e+02 Score=23.54 Aligned_cols=46 Identities=13% Similarity=0.090 Sum_probs=36.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHH
Q 044523 12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCS-LAILGL 57 (112)
Q Consensus 12 ~~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~i-LFlwsn 57 (112)
...|..|..+|+.+.-..|...||+.++.-+-++++..+. ++-|.+
T Consensus 57 ~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~~~~~~ 103 (332)
T COG4129 57 ALQRLLGNALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVLLKLEN 103 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccc
Confidence 6678889999999999999999999999888877766543 334444
No 42
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=25.83 E-value=1.6e+02 Score=18.20 Aligned_cols=19 Identities=32% Similarity=0.537 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 43 DVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 43 ~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
++++++++++.+.+ |-++|
T Consensus 7 elliI~vi~llvFG---------p~KLP 25 (51)
T PRK01470 7 HLLIVLLIIFVLFG---------AGKLP 25 (51)
T ss_pred HHHHHHHHHHHhcC---------chHhH
Confidence 55666666655432 66888
No 43
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=25.12 E-value=1e+02 Score=22.20 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=20.0
Q ss_pred HHHHHhCCchHHHHHH------HHHHHHHHHHHHHHH
Q 044523 28 YHCAYRNSSLLSLISD------VFIVLLCSLAILGLL 58 (112)
Q Consensus 28 ~lFE~~~Y~flSl~c~------vLll~l~iLFlwsn~ 58 (112)
|++|..+|--.+++++ .++..++.+..|+..
T Consensus 90 Y~~Eil~w~~f~l~~~~~~~~~f~~~~~~~l~~~A~~ 126 (150)
T PF02544_consen 90 YFFEILIWIGFALLTGSWPSYAFALFVVVNLSPRAVQ 126 (150)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 6778877777777777 444455555555554
No 44
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=25.05 E-value=88 Score=21.52 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHh
Q 044523 36 SLLSLISDVFIVLLCSLAILGLLFRQ 61 (112)
Q Consensus 36 ~flSl~c~vLll~l~iLFlwsn~a~~ 61 (112)
+|+=.+|-++++.++++|+--...-.
T Consensus 35 dFvLVic~~lVfVii~lFi~ll~~i~ 60 (84)
T PF06143_consen 35 DFVLVICCFLVFVIIVLFILLLYNIN 60 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668999999999999998776443
No 45
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=24.66 E-value=1.8e+02 Score=20.14 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044523 42 SDVFIVLLCSLAILGLLFRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAAT 103 (112)
Q Consensus 42 c~vLll~l~iLFlwsn~a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~ 103 (112)
-|+++++++++.+.+ +-++| .+...+.+++..+|.-..
T Consensus 7 ~ELLIIlvIvLLLFG---------~kKLP---------------eLgr~LGkaIkeFKka~~ 44 (85)
T PRK01614 7 TKLLVVGILIVLLFG---------TSKLR---------------TLGADLGAALKGFKKAMR 44 (85)
T ss_pred HHHHHHHHHHHHHhC---------cchHH---------------HHHHHHHHHHHHHHHhhc
Confidence 367777777776543 45788 334555555666665433
No 46
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=24.40 E-value=2.8e+02 Score=21.43 Aligned_cols=50 Identities=14% Similarity=-0.039 Sum_probs=28.5
Q ss_pred HHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 044523 59 FRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGHDKRL 109 (112)
Q Consensus 59 a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~kl 109 (112)
..+-+-++|++|.+..=.++...-+..+ -.--=++..-+-|+..|||...
T Consensus 88 ~dISgC~~a~LPedp~D~~~~l~vlv~A-E~CAir~ykeic~~T~GkDprT 137 (172)
T COG2406 88 HDISGCKPAYLPEDPYDIDEILAVLVKA-ERCAIRAYKEICNLTAGKDPRT 137 (172)
T ss_pred HhhcCCCCCCCCCCccCHHHHHHHHHHH-HHHHHHHHHHHHccccCCCcch
Confidence 4455668999994443233332222111 1112356677788899999764
No 47
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=24.34 E-value=1.9e+02 Score=19.31 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 43 DVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 43 ~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
+++++++++|.+.+ +-++|
T Consensus 8 elliIl~IvlllFG---------~kKLP 26 (73)
T PRK02958 8 HWLIVLVIVVLVFG---------TKKLR 26 (73)
T ss_pred HHHHHHHHHHHHhC---------cchHH
Confidence 67777777776653 56888
No 48
>TIGR03382 GC_trans_RRR Myxococcales GC_trans_RRR domain. The domain described here is small (about 30 amino acids), hydrophobic, only moderately conserved, and similar to numerous other transmembrane helix-containing sequence regions from convergent evolution. This domain is found, once per protein but in many proteins per genome in several bacteria of the order Myxococcales. It begins with a signature Gly-Cys motif. Its other features, including a hydrophobic transmembrane helix, Arg-rich cluster, and location at the protein C-terminus, resemble the PEP-CTERM proposed protein targeting domain.
Probab=24.22 E-value=1.3e+02 Score=16.26 Aligned_cols=6 Identities=50% Similarity=1.270 Sum_probs=4.8
Q ss_pred CCCCCC
Q 044523 2 GCSSSN 7 (112)
Q Consensus 2 ~~~~~~ 7 (112)
||++++
T Consensus 1 GC~a~~ 6 (27)
T TIGR03382 1 GCSAAG 6 (27)
T ss_pred CCCCCC
Confidence 798876
No 49
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.15 E-value=2.7e+02 Score=19.84 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=26.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCchHHHHHH
Q 044523 12 EVGKALGVLICGSLVYYHCAYRNSSLLSLISD 43 (112)
Q Consensus 12 ~~g~~~~vL~~aT~iW~lFE~~~Y~flSl~c~ 43 (112)
+..|..+.+.|+.+-...|+..|||.+++---
T Consensus 51 ~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~ 82 (141)
T PF06081_consen 51 GLNRILGTLIGALLALLFFLILGYNPLSIGLA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence 56788889999999899999999999877533
No 50
>PF04688 Phage_holin: Phage lysis protein, holin; InterPro: IPR006479 This entry represents the Bacteriophage SP-beta, BhlB, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.64 E-value=1.8e+02 Score=17.62 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=12.3
Q ss_pred CCCCCccccCHHHHHHHHHHHH
Q 044523 67 PVDPLEWQISQETANSIVAWLA 88 (112)
Q Consensus 67 P~iP~e~~isEe~v~~iA~~l~ 88 (112)
|||| ++||.+.++++.+.
T Consensus 3 ~plp----i~e~~i~~~~s~v~ 20 (47)
T PF04688_consen 3 SPLP----IDEEQINQLISAVF 20 (47)
T ss_pred CCCC----cCHHHHHHHHHHHH
Confidence 4555 77999888865543
No 51
>PF04608 PgpA: Phosphatidylglycerophosphatase A; InterPro: IPR007686 This family represents a family of bacterial phosphatidylglycerophosphatases (3.1.3.27 from EC), known as PgpA. It appears that bacteria possess several phosphatidylglycerophosphatases, and thus, PgpA is not essential in Escherichia coli [].; GO: 0008962 phosphatidylglycerophosphatase activity, 0006629 lipid metabolic process; PDB: 1Y9I_D 1RFZ_B 1TLQ_A.
Probab=23.43 E-value=3e+02 Score=20.05 Aligned_cols=23 Identities=22% Similarity=0.093 Sum_probs=13.9
Q ss_pred CCCCCCCCCccccCHHHHHHHHH
Q 044523 63 NISVPVDPLEWQISQETANSIVA 85 (112)
Q Consensus 63 n~~~P~iP~e~~isEe~v~~iA~ 85 (112)
++...+.|.++.++|-.-.-++.
T Consensus 61 ~~~~~~Dp~~iViDEv~G~~i~~ 83 (143)
T PF04608_consen 61 KYLGKKDPGEIVIDEVAGQWIAL 83 (143)
T ss_dssp TTSSHTT-TT--HHHHHHHHHHH
T ss_pred hccCCCCCCCeeehhHHHHHHHH
Confidence 34456899788888887776665
No 52
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=23.37 E-value=3.9e+02 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCcc
Q 044523 46 IVLLCSLAILGLLFRQMNISVPVDPLEW 73 (112)
Q Consensus 46 ll~l~iLFlwsn~a~~~n~~~P~iP~e~ 73 (112)
.++++.+++|+... +++|+.|.++
T Consensus 165 ~~~l~~~~~~~~~~----~~~~~~p~~w 188 (388)
T PRK13825 165 AIALVGLWLWSAAA----WTLPRAPAGW 188 (388)
T ss_pred HHHHHHHHHhhccc----CCCCCCCCCe
Confidence 33445555554433 4678888666
No 53
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=22.50 E-value=2.5e+02 Score=18.91 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 044523 43 DVFIVLLCSLAILG 56 (112)
Q Consensus 43 ~vLll~l~iLFlws 56 (112)
|+++++++++.+++
T Consensus 8 ellIIlvIvlLlFG 21 (75)
T PRK04561 8 HWLVVLVIVLLVFG 21 (75)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777766654
No 54
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.40 E-value=2e+02 Score=23.21 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=34.3
Q ss_pred hhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044523 61 QMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAATGH 105 (112)
Q Consensus 61 ~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~Gk 105 (112)
++++.+-|.| +|.+++.-+.+|.+-++.-.-+|||-.+.
T Consensus 3 l~~~~~~pdP------KEq~r~wq~kiRke~r~ldrqir~iqree 41 (227)
T KOG3229|consen 3 LFGKTPGPDP------KEQVREWQSKIRKEGRQLDRQIRDIQREE 41 (227)
T ss_pred ccccCCCCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999 99999999999999999999999987653
No 55
>PF06703 SPC25: Microsomal signal peptidase 25 kDa subunit (SPC25); InterPro: IPR009582 This family consists of several microsomal signal peptidase 25 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains [].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=22.16 E-value=2.3e+02 Score=20.46 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHH-HHHHHhCCchHHHHHHHH-HHHHHHHHHHHHH
Q 044523 13 VGKALGVLICGSLVY-YHCAYRNSSLLSLISDVF-IVLLCSLAILGLL 58 (112)
Q Consensus 13 ~g~~~~vL~~aT~iW-~lFE~~~Y~flSl~c~vL-ll~l~iLFlwsn~ 58 (112)
.|-...+++++...| +.+++-+..-++.+|=++ .+++.++.+|+..
T Consensus 32 lg~~a~~iA~~a~~~d~~~~f~~s~~~~~~~v~~YfiLs~il~~~~~~ 79 (162)
T PF06703_consen 32 LGYLAVIIAGFAFFYDYKYPFPESKPYLIICVILYFILSGILTLYSYF 79 (162)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665 446666666666555554 6677888888886
No 56
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=22.07 E-value=5e+02 Score=22.12 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHHH----HHH-HHhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Q 044523 48 LLCSLAIL----GLL-FRQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVL 98 (112)
Q Consensus 48 ~l~iLFlw----sn~-a~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l 98 (112)
.=++.-+| +++ -+..+++||++| .+ ..-+|+.+.+.+-+.+-..
T Consensus 157 SkiV~alWF~DIa~aa~rv~k~~P~p~p-~~------Sk~~Ad~Lfs~l~Q~lFLi 205 (360)
T KOG3966|consen 157 SKIVQALWFSDIAGAAMRVLKLPPPPVP-PF------SKMLADTLFSALHQILFLI 205 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-CH------HHHHHHHHHHHHHHHHHHH
Confidence 33445556 233 578899999999 33 2234555555555544333
No 57
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=22.05 E-value=2.1e+02 Score=19.48 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 044523 43 DVFIVLLCSLAILG 56 (112)
Q Consensus 43 ~vLll~l~iLFlws 56 (112)
++++++++++.+++
T Consensus 8 elliIlvivlllFG 21 (81)
T PRK04598 8 QLLIIAVIVVLLFG 21 (81)
T ss_pred HHHHHHHHHHHHhC
Confidence 66777777766553
No 58
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=21.77 E-value=2.1e+02 Score=20.17 Aligned_cols=55 Identities=15% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHhhCCCCCCCCCccc------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 044523 56 GLLFRQMNISVPVDPLEWQ------------ISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFF 111 (112)
Q Consensus 56 sn~a~~~n~~~P~iP~e~~------------isEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~klFl 111 (112)
..+.+..+..+||+|..-. .+++.+.+=-..+..-+|+...- -.+..-.+++.||
T Consensus 52 ~~L~~~~~~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~h-P~l~~~~~l~~FL 118 (123)
T cd07293 52 SELERESKVVVPPLPGKALFRQLPFRGDDGIFDDSFIEERKQGLEQFLNKVAGH-PLAQNERCLHMFL 118 (123)
T ss_pred HHHHhccCCccCCCCCCchhhhcccccccCCCCHHHHHHHHHHHHHHHHHHHcC-cccccCcHHHhhc
Confidence 3344445677899994332 24666555555555555555331 2223334455554
No 59
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=21.68 E-value=3.1e+02 Score=19.58 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhC--Cc-----hHHHHHHHHHHHHHHHHHHHH
Q 044523 14 GKALGVLICGSLVYYHCAYRN--SS-----LLSLISDVFIVLLCSLAILGL 57 (112)
Q Consensus 14 g~~~~vL~~aT~iW~lFE~~~--Y~-----flSl~c~vLll~l~iLFlwsn 57 (112)
--.+++++++++.||+-+.+- .+ +++++|-+++++.=+.|.+..
T Consensus 84 Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y 134 (142)
T PF11712_consen 84 NILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRY 134 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888999998877433 22 344444444444434444433
No 60
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=21.60 E-value=2.5e+02 Score=19.73 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCCCCCCCccc-------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 044523 55 LGLLFRQMNISVPVDPLEWQ-------------ISQETANSIVAWLANTVGAAESVLRVAATGHDKRLFF 111 (112)
Q Consensus 55 wsn~a~~~n~~~P~iP~e~~-------------isEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~klFl 111 (112)
+..+.+.-+..+|++| +=. .+++...+=...+...+|+.+.- --+..-.+++.||
T Consensus 51 ~~~L~~~~~~~iPpLP-~K~~~~~~~~~~~~~~~~~~fie~Rr~~L~~fL~~i~~h-p~l~~s~~~~~FL 118 (123)
T cd06894 51 RSELERDSKIVVPPLP-GKALKRQLPFRGDDGIFEEEFIEERRKGLETFINKVAGH-PLAQNEKCLHMFL 118 (123)
T ss_pred HHHHHHcCCCccCCCC-CCceecccccccccCCCCHHHHHHHHHHHHHHHHHHHcC-hhhccCCHHHHhc
Confidence 3444444566789999 532 25665555555555555555332 1233344555554
No 61
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=21.31 E-value=43 Score=21.62 Aligned_cols=9 Identities=56% Similarity=0.970 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 044523 1 MGCSSSNSS 9 (112)
Q Consensus 1 ~~~~~~~~~ 9 (112)
|||+.|--.
T Consensus 1 MGC~~SK~d 9 (60)
T PF04783_consen 1 MGCSQSKLD 9 (60)
T ss_pred CCCCccccc
Confidence 666665443
No 62
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=21.23 E-value=1.6e+02 Score=18.08 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 42 SDVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 42 c~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
.++++++++++.+.+ |.++|
T Consensus 4 ~El~iI~vvalllfG---------p~kLP 23 (53)
T PF02416_consen 4 PELLIILVVALLLFG---------PKKLP 23 (53)
T ss_dssp HHHHHHHHHHHHHS----------TTTHH
T ss_pred HHHHHHHHHHHHHhC---------chHHH
Confidence 355666666665443 67888
No 63
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=20.55 E-value=5.9e+02 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 044523 85 AWLANTVGAAESVLRVAATGH 105 (112)
Q Consensus 85 ~~l~~~iN~~l~~l~dIA~Gk 105 (112)
..++.+++.++..+|..-.|+
T Consensus 84 ~~l~~~~~~a~~~Lk~~~~~~ 104 (1169)
T TIGR03348 84 RELRARFNEALALLKRSRLGG 104 (1169)
T ss_pred HHHHHHHHHHHHHHhhccccC
Confidence 468999999999999776543
No 64
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.46 E-value=1.5e+02 Score=22.97 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=24.7
Q ss_pred CCCCCCccccCHHHHHHHHHHHHHHHHHHH
Q 044523 66 VPVDPLEWQISQETANSIVAWLANTVGAAE 95 (112)
Q Consensus 66 ~P~iP~e~~isEe~v~~iA~~l~~~iN~~l 95 (112)
...++ |+-+|||.+++-...+..++|+-.
T Consensus 4 ~~~~~-evLisee~I~~ri~ela~~I~~~y 32 (178)
T COG0634 4 MKHIK-EVLISEEQIKARIKELAAQITEDY 32 (178)
T ss_pred ccccc-eEeeCHHHHHHHHHHHHHHHHHhh
Confidence 45788 999999999999999999988754
No 65
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=20.07 E-value=4e+02 Score=23.32 Aligned_cols=45 Identities=11% Similarity=-0.052 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044523 15 KALGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSLAILGLLFRQM 62 (112)
Q Consensus 15 ~~~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iLFlwsn~a~~~ 62 (112)
-++.+.++.+++|.. .||..++.+..+....+.++|+|.....+-
T Consensus 132 ~~ili~g~l~~l~~i---fG~r~l~~l~~~a~~~~~~lf~~l~~~~~~ 176 (442)
T COG1457 132 AGILIIGVLMTLVTI---FGYRALHKLERIAVPLLLLLFLYLLALLFR 176 (442)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445556554 489999999999999999999999985544
Done!