Query 044523
Match_columns 112
No_of_seqs 101 out of 165
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 76.8 6.2 0.00021 24.2 5.0 35 37-73 13-47 (54)
2 3arc_T Photosystem II reaction 66.6 12 0.0004 20.8 4.1 12 59-70 19-30 (32)
3 2ko2_A Reticulon-4; NOGO, memb 64.0 1.8 6.1E-05 28.5 0.5 37 72-108 39-75 (79)
4 2knc_A Integrin alpha-IIB; tra 63.7 17 0.00059 22.1 4.9 32 37-70 16-47 (54)
5 2g31_A Reticulon-4; NOGO, heli 56.7 1.8 6E-05 26.9 -0.5 30 72-101 26-55 (60)
6 3mg1_A OCP, orange carotenoid 50.2 18 0.00061 29.4 4.2 52 52-103 107-159 (323)
7 2k1a_A Integrin alpha-IIB; sin 44.5 34 0.0012 19.7 3.8 29 37-67 14-42 (42)
8 4aw6_A CAAX prenyl protease 1 31.3 1.7E+02 0.006 24.2 7.5 43 25-67 184-228 (482)
9 1j1d_C Troponin I, TNI; THIN f 28.3 1.4E+02 0.0046 21.1 5.5 34 65-101 51-84 (133)
10 2lvv_A Flagellar calcium-bindi 24.3 19 0.00065 25.4 0.4 9 1-9 1-9 (226)
11 2i4k_A Sorting nexin-1, SNX1; 23.1 1.1E+02 0.0036 19.8 4.0 57 54-111 52-124 (128)
12 1ytz_I Troponin I; muscle, THI 20.3 2.1E+02 0.0073 21.1 5.5 35 64-102 48-82 (182)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=76.82 E-value=6.2 Score=24.21 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCcc
Q 044523 37 LLSLISDVFIVLLCSLAILGLLFRQMNISVPVDPLEW 73 (112)
Q Consensus 37 flSl~c~vLll~l~iLFlwsn~a~~~n~~~P~iP~e~ 73 (112)
.++.++-+++++++++-+| =..||+|..|+...|+
T Consensus 13 i~svl~GLLLL~Lii~~Lw--K~GFFKR~~~~~~~~~ 47 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALW--KIGFFKRPLKKKMEKL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHTTSCCSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCcccCCCcchhhHH
Confidence 4567788888888888888 3579999987766455
No 2
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=66.56 E-value=12 Score=20.76 Aligned_cols=12 Identities=17% Similarity=0.027 Sum_probs=9.7
Q ss_pred HHhhCCCCCCCC
Q 044523 59 FRQMNISVPVDP 70 (112)
Q Consensus 59 a~~~n~~~P~iP 70 (112)
.+++-|.||+||
T Consensus 19 FAI~FRePPri~ 30 (32)
T 3arc_T 19 FAIFFREPPRIT 30 (32)
T ss_dssp HHHHTSCCCCCC
T ss_pred HhhhhcCCCCCC
Confidence 456778999998
No 3
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=63.99 E-value=1.8 Score=28.46 Aligned_cols=37 Identities=22% Similarity=0.047 Sum_probs=33.5
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 044523 72 EWQISQETANSIVAWLANTVGAAESVLRVAATGHDKR 108 (112)
Q Consensus 72 e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~k 108 (112)
|+.+|+|.+++.+..+-..+|.++.-+|++=...|+-
T Consensus 39 Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlv 75 (79)
T 2ko2_A 39 EVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLV 75 (79)
T ss_dssp HHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHH
Confidence 5689999999999999999999999999998877764
No 4
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.69 E-value=17 Score=22.11 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 044523 37 LLSLISDVFIVLLCSLAILGLLFRQMNISVPVDP 70 (112)
Q Consensus 37 flSl~c~vLll~l~iLFlwsn~a~~~n~~~P~iP 70 (112)
.++.++-+++++++++-+| =..||+|..|+.-
T Consensus 16 i~svl~GLllL~li~~~Lw--K~GFFkR~~~~~~ 47 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMW--KVGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCcccCCCCCcc
Confidence 4567778888888888888 3579999887665
No 5
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=56.73 E-value=1.8 Score=26.85 Aligned_cols=30 Identities=23% Similarity=0.115 Sum_probs=27.5
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 72 EWQISQETANSIVAWLANTVGAAESVLRVA 101 (112)
Q Consensus 72 e~~isEe~v~~iA~~l~~~iN~~l~~l~dI 101 (112)
++.+|+|.+++.+..+-..+|.++.-+|++
T Consensus 26 di~ls~e~~~~~~~~~v~~in~~l~~lrrL 55 (60)
T 2g31_A 26 EVAISEELVQKYSNSALGHVNCTIKELRRL 55 (60)
T ss_dssp HHHHHHHHHHHHHHHGGGTCHHHHHHHHTS
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 568999999999999999999999999875
No 6
>3mg1_A OCP, orange carotenoid protein; carotenoid binding protein, echinone, phycobilisome; HET: ECH; 1.65A {Synechocystis SP} PDB: 3mg2_A* 3mg3_A* 1m98_A*
Probab=50.20 E-value=18 Score=29.38 Aligned_cols=52 Identities=23% Similarity=0.167 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhCC-CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044523 52 LAILGLLFRQMNI-SVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAAT 103 (112)
Q Consensus 52 LFlwsn~a~~~n~-~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~ 103 (112)
|-+|--++..+.. ..=|+|...++|++.-.-+...=.-..++-.+++|+++.
T Consensus 107 L~fWY~Lae~M~~G~VipvP~~Y~lS~~a~~vl~~I~~Ldf~QQItvlR~~V~ 159 (323)
T 3mg1_A 107 LGFWYRLGELMEQGFVAPIPAGYQLSANANAVLATIQGLESGQQITVLRNAVV 159 (323)
T ss_dssp HHHHHHHHHHHHHTSSCCSCTTCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCcEecCCCCCCcCHHHHHHHHHHHcCChhhhHHHHHHHHH
Confidence 5678888888887 899999888999998666665555677999999999875
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=44.49 E-value=34 Score=19.68 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 044523 37 LLSLISDVFIVLLCSLAILGLLFRQMNISVP 67 (112)
Q Consensus 37 flSl~c~vLll~l~iLFlwsn~a~~~n~~~P 67 (112)
.++.++-+++++++++-+| =..||+|..|
T Consensus 14 i~s~l~GLllL~li~~~Lw--K~GFFkR~~~ 42 (42)
T 2k1a_A 14 LVGVLGGLLLLTILVLAMW--KVGFFKRNRP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HTTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--HcCcccCCCC
Confidence 3566777888888888888 2468888765
No 8
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=31.27 E-value=1.7e+02 Score=24.24 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCc-hHHHHHHHHHHHHHHHHHHHHH-HHhhCCCCC
Q 044523 25 LVYYHCAYRNSS-LLSLISDVFIVLLCSLAILGLL-FRQMNISVP 67 (112)
Q Consensus 25 ~iW~lFE~~~Y~-flSl~c~vLll~l~iLFlwsn~-a~~~n~~~P 67 (112)
++.++.++.|.. .+-.-.-...+.++..+++-.. +.+||+-.|
T Consensus 184 ~~~~ii~~~g~~~wl~~w~~~~~~~l~~~~iyP~~I~PLfnk~~P 228 (482)
T 4aw6_A 184 LLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTP 228 (482)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCEEE
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 344467776544 4555555566667777888886 999997543
No 9
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=28.33 E-value=1.4e+02 Score=21.06 Aligned_cols=34 Identities=6% Similarity=-0.107 Sum_probs=27.8
Q ss_pred CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 65 SVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVA 101 (112)
Q Consensus 65 ~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dI 101 (112)
+|++|+ .++|+...+.+..++.+|++.-.-=+|+
T Consensus 51 ~pL~id---~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 51 QPLELA---GLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCCCCT---TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 555566 7789999999999999999887766665
No 10
>2lvv_A Flagellar calcium-binding protein TB-24; EF-hand, metal binding protein; NMR {Trypanosoma brucei brucei}
Probab=24.33 E-value=19 Score=25.45 Aligned_cols=9 Identities=56% Similarity=1.110 Sum_probs=6.8
Q ss_pred CCCCCCCCC
Q 044523 1 MGCSSSNSS 9 (112)
Q Consensus 1 ~~~~~~~~~ 9 (112)
|||++|.+.
T Consensus 1 mg~~~s~~~ 9 (226)
T 2lvv_A 1 MGCSGSKDT 9 (226)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCccc
Confidence 899987553
No 11
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=23.07 E-value=1.1e+02 Score=19.81 Aligned_cols=57 Identities=21% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHhh---CCCCCCCCCcccc-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 044523 54 ILGLLFRQM---NISVPVDPLEWQI-------------SQETANSIVAWLANTVGAAESVLRVAATGHDKRLFF 111 (112)
Q Consensus 54 lwsn~a~~~---n~~~P~iP~e~~i-------------sEe~v~~iA~~l~~~iN~~l~~l~dIA~GkD~klFl 111 (112)
++..+...+ +...|++|+.-.+ +++.+.+=-..+...+|+.+.. ..++.-.+++.||
T Consensus 52 L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~~~~FL 124 (128)
T 2i4k_A 52 LYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNH-PTMLQDPDVREFL 124 (128)
T ss_dssp HHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCCCSCCCSSTTHHHHHHHHHHHHHHHHHHC-HHHHCSHHHHTTT
T ss_pred HHHHHHHhCCCCCcCcCCCCCCcccchhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHcC-cccccChHHHHhh
Confidence 444554444 4568888844332 5677776667777777777653 3444445555554
No 12
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=20.33 E-value=2.1e+02 Score=21.12 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=28.1
Q ss_pred CCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 64 ISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAA 102 (112)
Q Consensus 64 ~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA 102 (112)
++|++|+ . |++...+++..++.+|+..-.-=+|+-
T Consensus 48 ~kPLnid-~---se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 48 SPPLSLP-G---SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp SCCCCCC-C---SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCC-C---CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3566666 3 999999999999999998877766653
Done!