Query 044523
Match_columns 112
No_of_seqs 101 out of 165
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 06:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m98a1 a.175.1.1 (A:2-175) Or 71.2 4 0.00029 28.7 5.5 52 52-103 106-158 (174)
2 d1pv7a_ f.38.1.2 (A:) Lactose 45.9 35 0.0025 22.2 6.6 36 17-52 360-395 (417)
3 d1i5za1 a.4.5.4 (A:138-206) Ca 34.8 20 0.0015 19.9 3.4 41 60-100 15-55 (69)
4 d1jr3a1 a.80.1.1 (A:243-368) g 25.8 17 0.0013 22.0 2.1 37 75-111 2-40 (126)
5 d351ca_ a.3.1.1 (A:) Cytochrom 19.0 43 0.0031 18.6 2.8 23 66-89 58-80 (82)
6 d1p16a2 d.142.2.3 (A:1-245) mR 18.3 41 0.003 22.3 2.9 29 63-92 6-34 (245)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 16.5 49 0.0036 16.0 2.1 18 47-64 7-24 (27)
8 d2juza1 a.284.1.1 (A:1-72) Unc 15.8 1.1E+02 0.0078 18.1 4.1 32 51-83 33-65 (72)
9 d1cora_ a.3.1.1 (A:) Cytochrom 15.2 55 0.004 18.0 2.6 23 66-89 58-80 (82)
10 d2gaua1 a.4.5.4 (A:152-232) Tr 14.1 88 0.0064 17.2 3.3 41 61-101 16-56 (81)
No 1
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=71.22 E-value=4 Score=28.73 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhCC-CCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044523 52 LAILGLLFRQMNI-SVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVAAT 103 (112)
Q Consensus 52 LFlwsn~a~~~n~-~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dIA~ 103 (112)
|-+|--++..+.. .+=|+|...++|++.-.-+...=.-..|+-.+++|+++.
T Consensus 106 L~fWY~Lae~M~~G~VipvP~~YqlS~~a~~vl~~I~~Ldf~QQITvlR~~V~ 158 (174)
T d1m98a1 106 LGFWYELGRFMDQGLVAPIPEGYKLSANANAILVTIQGIDPGQQITVLRNCVV 158 (174)
T ss_dssp HHHHHHHHHHHHTTSSCCCCTTCCCCHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcEeeCCCCCCcCHHHHHHHHHHHcCChhhhHHHHHHHHH
Confidence 6678888888888 688999888999998776666666678999999999975
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=45.90 E-value=35 Score=22.22 Aligned_cols=36 Identities=8% Similarity=-0.024 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Q 044523 17 LGVLICGSLVYYHCAYRNSSLLSLISDVFIVLLCSL 52 (112)
Q Consensus 17 ~~vL~~aT~iW~lFE~~~Y~flSl~c~vLll~l~iL 52 (112)
++..++..+.=++.+..||+-.-+++-++.+...++
T Consensus 360 ~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 395 (417)
T d1pv7a_ 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 344444555567788888876554444444443333
No 3
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=34.78 E-value=20 Score=19.91 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=29.7
Q ss_pred HhhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 60 RQMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRV 100 (112)
Q Consensus 60 ~~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~d 100 (112)
.-.+.+.++...++.++.+-.-+....=|..+|+.++-+++
T Consensus 15 ~~~g~~~~~~~i~l~lt~~~lA~~~G~sRetvsr~L~~l~~ 55 (69)
T d1i5za1 15 KQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLED 55 (69)
T ss_dssp GSTTCCCCSSSCEEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCeeecCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555444444356788888777777779999999999886
No 4
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}
Probab=25.81 E-value=17 Score=22.05 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=25.5
Q ss_pred cCHHHHHHHHHHH-HHHHHHHHHHHHHH-HhcCCccccc
Q 044523 75 ISQETANSIVAWL-ANTVGAAESVLRVA-ATGHDKRLFF 111 (112)
Q Consensus 75 isEe~v~~iA~~l-~~~iN~~l~~l~dI-A~GkD~klFl 111 (112)
|+++.+.++..++ ......++..++++ ..|+|.+.|+
T Consensus 2 vD~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l 40 (126)
T d1jr3a1 2 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALL 40 (126)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 4566666664443 44567888888888 5588888775
No 5
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.03 E-value=43 Score=18.61 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=18.2
Q ss_pred CCCCCCccccCHHHHHHHHHHHHH
Q 044523 66 VPVDPLEWQISQETANSIVAWLAN 89 (112)
Q Consensus 66 ~P~iP~e~~isEe~v~~iA~~l~~ 89 (112)
..+.| ...+|||-+..+|+-|++
T Consensus 58 ~~~MP-~~~lsd~ei~~la~Yi~S 80 (82)
T d351ca_ 58 PIPMP-PNAVSDDEAQTLAKWVLS 80 (82)
T ss_dssp SSCBC-CCSCCHHHHHHHHHHHHT
T ss_pred ccccc-ccCCCHHHHHHHHHHHHh
Confidence 34688 778999999988887764
No 6
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]}
Probab=18.30 E-value=41 Score=22.35 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=20.4
Q ss_pred CCCCCCCCCccccCHHHHHHHHHHHHHHHH
Q 044523 63 NISVPVDPLEWQISQETANSIVAWLANTVG 92 (112)
Q Consensus 63 n~~~P~iP~e~~isEe~v~~iA~~l~~~iN 92 (112)
-+..|.|| -..++++..+++...++..++
T Consensus 6 ~~~~~~~p-g~~~~~~~~~~~~~~v~~~~~ 34 (245)
T d1p16a2 6 EREIPVIP-GNKLDEEETKELRLMVAELLG 34 (245)
T ss_dssp CCCCCCCS-SEECCHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCC-CCcCCHHHHHHHHHHHHHHHC
Confidence 35678899 788999887766555555443
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.54 E-value=49 Score=16.03 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhCC
Q 044523 47 VLLCSLAILGLLFRQMNI 64 (112)
Q Consensus 47 l~l~iLFlwsn~a~~~n~ 64 (112)
+.+++.|-||.+--.-+|
T Consensus 7 v~llvvftwsiamvvwgr 24 (27)
T d2e74h1 7 VALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHhhheeeeEEEcc
Confidence 356778899988655554
No 8
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]}
Probab=15.75 E-value=1.1e+02 Score=18.10 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=20.3
Q ss_pred HHHHHHHH-HHhhCCCCCCCCCccccCHHHHHHH
Q 044523 51 SLAILGLL-FRQMNISVPVDPLEWQISQETANSI 83 (112)
Q Consensus 51 iLFlwsn~-a~~~n~~~P~iP~e~~isEe~v~~i 83 (112)
.|-+.+|. ..++|.+.|+-- +-.+-|...+-.
T Consensus 33 SLMvLGN~vTniln~~V~~~q-R~~iAe~Fa~AL 65 (72)
T d2juza1 33 SLIALGNMASNLLTTSVPQTQ-CEALAQAFSNSL 65 (72)
T ss_dssp HHHHHHHHHHHHHTTSSCSTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHH
Confidence 34555888 889999987665 444444444433
No 9
>d1cora_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas stutzeri [TaxId: 316]}
Probab=15.22 E-value=55 Score=18.03 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCCCCCccccCHHHHHHHHHHHHH
Q 044523 66 VPVDPLEWQISQETANSIVAWLAN 89 (112)
Q Consensus 66 ~P~iP~e~~isEe~v~~iA~~l~~ 89 (112)
.+..| ...+|||-+.++|+-|++
T Consensus 58 ~~~Mp-~~~lsdeei~~la~Yi~S 80 (82)
T d1cora_ 58 PIPMP-PNPVTEEEAKILAEWILS 80 (82)
T ss_dssp SSCBC-CCSCCHHHHHHHHHHHHS
T ss_pred ccccc-ccCCCHHHHHHHHHHHHh
Confidence 34567 778999999999887653
No 10
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=14.12 E-value=88 Score=17.19 Aligned_cols=41 Identities=10% Similarity=0.026 Sum_probs=27.5
Q ss_pred hhCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044523 61 QMNISVPVDPLEWQISQETANSIVAWLANTVGAAESVLRVA 101 (112)
Q Consensus 61 ~~n~~~P~iP~e~~isEe~v~~iA~~l~~~iN~~l~~l~dI 101 (112)
-++.+.+....++.+|.+-.-+....=|..+|+.+.-+++-
T Consensus 16 ~~g~~~~~~~i~~~lt~~eLA~~~G~sretvsr~L~~l~~~ 56 (81)
T d2gaua1 16 NFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSE 56 (81)
T ss_dssp HHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HhCCCCCCCEEeecCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 34444443333456777776666666689999999988864
Done!