BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044525
         (502 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Space Group C2221
 pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Space Group C2221
 pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Space Group P43212
          Length = 653

 Score = 29.6 bits (65), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 206 PTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETA-GTELECFL 264
           P  PIP +ED  +  L     LL DS+    +R E L        K  ET  G EL   L
Sbjct: 45  PRLPIPKLEDTXKRYLNAQKPLLDDSQF---RRTEAL-------CKNFETGVGKELHAHL 94

Query: 265 ALQKQEQLAASSRINGLWED 284
            L + +Q   +S I+G W D
Sbjct: 95  -LAQDKQNKHTSYISGPWFD 113


>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Complex With Antidiabetic Drug St1326
 pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Complex With R-3-(Hexadecanoylamino)-4-
           (Trimethylazaniumyl)butanoate
 pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
           In Complex With R-3-(Hexadecanoylamino)-4-
           (Trimethylazaniumyl)butanoate
          Length = 653

 Score = 29.6 bits (65), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)

Query: 206 PTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETA-GTELECFL 264
           P  PIP +ED  +  L     LL DS+    +R E L        K  ET  G EL   L
Sbjct: 45  PRLPIPKLEDTMKRYLNAQKPLLDDSQF---RRTEAL-------CKNFETGVGKELHAHL 94

Query: 265 ALQKQEQLAASSRINGLWEDV 285
            L + +Q   +S I+G W D+
Sbjct: 95  -LAQDKQNKHTSYISGPWFDM 114


>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
 pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
          Length = 626

 Score = 29.3 bits (64), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 12/81 (14%)

Query: 206 PTAPIPVIEDFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMET-AGTELECFL 264
           P  PIP +ED  +  L     LL DS+    +R E L        K  ET  G EL   L
Sbjct: 20  PRLPIPKLEDTMKRYLNAQKPLLDDSQF---RRTEAL-------CKNFETGVGKELHAHL 69

Query: 265 ALQKQEQLAASSRINGLWEDV 285
            L + +Q   +S I+G W D+
Sbjct: 70  -LAQDKQNKHTSYISGPWFDM 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.128    0.352 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,501,123
Number of Sequences: 62578
Number of extensions: 405886
Number of successful extensions: 807
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 807
Number of HSP's gapped (non-prelim): 9
length of query: 502
length of database: 14,973,337
effective HSP length: 103
effective length of query: 399
effective length of database: 8,527,803
effective search space: 3402593397
effective search space used: 3402593397
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)