Query 044525
Match_columns 502
No_of_seqs 136 out of 181
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:04:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11831 Myb_Cef: pre-mRNA spl 100.0 5.7E-54 1.2E-58 418.2 21.5 201 1-230 5-209 (231)
2 KOG0050 mRNA splicing protein 100.0 1.5E-32 3.2E-37 288.5 18.6 198 33-291 382-617 (617)
3 PF12325 TMF_TATA_bd: TATA ele 84.1 29 0.00062 31.8 12.5 82 234-323 34-115 (120)
4 PF13851 GAS: Growth-arrest sp 82.2 54 0.0012 32.2 15.8 88 234-322 52-139 (201)
5 PF15619 Lebercilin: Ciliary p 77.7 75 0.0016 31.2 13.8 75 237-311 12-96 (194)
6 PF10168 Nup88: Nuclear pore c 77.2 91 0.002 36.4 16.4 72 252-323 555-626 (717)
7 PRK10884 SH3 domain-containing 76.0 52 0.0011 32.6 12.4 72 234-319 90-161 (206)
8 PRK09841 cryptic autophosphory 74.1 84 0.0018 36.3 15.2 82 238-319 268-361 (726)
9 KOG0977 Nuclear envelope prote 69.6 1.6E+02 0.0035 33.6 15.5 74 216-289 89-175 (546)
10 PF00038 Filament: Intermediat 63.3 1.7E+02 0.0038 29.5 14.8 31 234-264 192-222 (312)
11 PRK11519 tyrosine kinase; Prov 63.1 2E+02 0.0044 33.2 15.3 82 238-319 268-361 (719)
12 COG1579 Zn-ribbon protein, pos 59.0 2.2E+02 0.0047 29.2 17.6 84 234-319 63-146 (239)
13 PF10168 Nup88: Nuclear pore c 58.7 1.6E+02 0.0034 34.5 13.4 31 234-264 562-592 (717)
14 TIGR02338 gimC_beta prefoldin, 58.0 1.3E+02 0.0029 26.4 11.5 77 234-310 14-108 (110)
15 COG1382 GimC Prefoldin, chaper 56.1 1.5E+02 0.0033 27.4 10.2 37 274-310 75-111 (119)
16 PRK02224 chromosome segregatio 55.9 3.9E+02 0.0084 31.2 16.5 84 235-318 473-558 (880)
17 PF04156 IncA: IncA protein; 55.8 1.8E+02 0.004 27.4 14.2 62 235-296 86-150 (191)
18 PF07889 DUF1664: Protein of u 55.5 1.7E+02 0.0037 27.2 10.6 67 239-319 45-111 (126)
19 cd00632 Prefoldin_beta Prefold 55.4 1.4E+02 0.0031 26.0 11.8 77 234-310 10-104 (105)
20 COG1196 Smc Chromosome segrega 54.4 3.9E+02 0.0085 32.8 16.3 76 236-311 673-751 (1163)
21 PF06005 DUF904: Protein of un 53.4 1.4E+02 0.003 25.2 11.0 38 278-315 27-64 (72)
22 PRK10884 SH3 domain-containing 52.7 2.5E+02 0.0054 28.0 13.1 23 235-257 98-120 (206)
23 PRK11637 AmiB activator; Provi 51.7 3.4E+02 0.0073 29.2 20.0 68 248-315 184-251 (428)
24 PF12128 DUF3584: Protein of u 51.4 5.3E+02 0.011 31.9 16.8 74 234-307 310-383 (1201)
25 PRK09039 hypothetical protein; 50.7 2.9E+02 0.0062 29.4 12.8 42 269-310 144-185 (343)
26 KOG4715 SWI/SNF-related matrix 50.7 3.6E+02 0.0077 29.2 13.2 56 234-289 218-273 (410)
27 PF04111 APG6: Autophagy prote 50.4 89 0.0019 32.7 8.9 68 252-319 17-86 (314)
28 PF05010 TACC: Transforming ac 49.8 2.8E+02 0.0061 27.8 13.2 54 241-305 87-140 (207)
29 PF09730 BicD: Microtubule-ass 49.5 3.1E+02 0.0067 32.4 13.7 84 237-320 359-442 (717)
30 PF15369 KIAA1328: Uncharacter 48.9 3E+02 0.0066 29.6 12.4 62 244-305 8-69 (328)
31 COG3074 Uncharacterized protei 47.3 1.8E+02 0.004 24.9 10.2 60 240-317 7-66 (79)
32 KOG1003 Actin filament-coating 46.9 1.1E+02 0.0024 30.7 8.4 51 265-315 152-204 (205)
33 PF11932 DUF3450: Protein of u 45.9 3.2E+02 0.0069 27.3 12.6 30 234-263 39-68 (251)
34 PHA02562 46 endonuclease subun 45.8 4.3E+02 0.0093 28.9 13.7 73 241-313 178-250 (562)
35 KOG4673 Transcription factor T 45.2 6.1E+02 0.013 30.3 16.2 43 276-318 523-565 (961)
36 PF03962 Mnd1: Mnd1 family; I 45.0 2.4E+02 0.0052 27.5 10.4 48 234-286 73-120 (188)
37 TIGR00293 prefoldin, archaeal 44.8 1E+02 0.0022 27.4 7.3 84 235-320 11-123 (126)
38 PF09730 BicD: Microtubule-ass 44.3 6.1E+02 0.013 30.1 17.9 80 234-313 31-113 (717)
39 TIGR02680 conserved hypothetic 42.6 8E+02 0.017 30.9 18.0 28 275-302 296-323 (1353)
40 PRK00106 hypothetical protein; 42.1 5.7E+02 0.012 29.1 17.6 27 274-300 106-132 (535)
41 TIGR01843 type_I_hlyD type I s 40.3 4.4E+02 0.0095 27.3 14.8 34 234-267 155-188 (423)
42 PF07200 Mod_r: Modifier of ru 39.3 3E+02 0.0065 25.1 13.1 56 273-328 52-107 (150)
43 TIGR03319 YmdA_YtgF conserved 39.2 6.1E+02 0.013 28.6 17.8 28 274-301 92-119 (514)
44 TIGR01005 eps_transp_fam exopo 38.8 4.5E+02 0.0098 30.3 13.0 70 240-312 319-391 (754)
45 KOG0976 Rho/Rac1-interacting s 38.7 6.2E+02 0.013 30.8 13.7 110 213-322 346-508 (1265)
46 TIGR02231 conserved hypothetic 38.4 4.4E+02 0.0095 29.1 12.4 42 278-319 126-167 (525)
47 KOG0250 DNA repair protein RAD 38.2 8.8E+02 0.019 30.1 19.0 87 234-320 292-388 (1074)
48 PF00261 Tropomyosin: Tropomyo 37.4 2.2E+02 0.0047 28.4 9.0 64 235-316 174-237 (237)
49 TIGR01843 type_I_hlyD type I s 37.3 4.9E+02 0.011 26.9 18.0 28 234-261 141-168 (423)
50 KOG4673 Transcription factor T 36.7 4.1E+02 0.0089 31.6 11.9 82 234-323 870-951 (961)
51 PF15556 Zwint: ZW10 interacto 36.7 4.8E+02 0.01 26.7 13.7 90 222-311 62-169 (252)
52 PRK11281 hypothetical protein; 36.5 9.4E+02 0.02 30.0 16.6 78 234-311 153-241 (1113)
53 KOG1029 Endocytic adaptor prot 36.0 5.4E+02 0.012 31.1 12.8 15 124-138 217-231 (1118)
54 PF04012 PspA_IM30: PspA/IM30 35.9 4.1E+02 0.009 25.7 14.6 42 270-311 92-133 (221)
55 TIGR02169 SMC_prok_A chromosom 35.6 8.1E+02 0.018 29.0 15.5 6 79-84 134-139 (1164)
56 TIGR03007 pepcterm_ChnLen poly 35.6 3.9E+02 0.0084 29.0 11.3 65 240-304 164-232 (498)
57 TIGR01005 eps_transp_fam exopo 35.3 7.5E+02 0.016 28.5 14.2 25 276-300 288-312 (754)
58 PF09728 Taxilin: Myosin-like 34.9 5.6E+02 0.012 26.9 12.4 96 65-184 8-103 (309)
59 KOG0250 DNA repair protein RAD 34.5 1E+03 0.022 29.7 16.5 83 238-323 373-455 (1074)
60 PF04111 APG6: Autophagy prote 33.8 5.8E+02 0.013 26.8 13.4 49 269-317 71-119 (314)
61 KOG1363 Predicted regulator of 33.5 4.4E+02 0.0096 29.5 11.4 49 324-372 348-396 (460)
62 COG1256 FlgK Flagellar hook-as 33.4 2E+02 0.0043 32.8 8.9 78 235-316 136-213 (552)
63 TIGR03752 conj_TIGR03752 integ 33.2 5.1E+02 0.011 29.2 11.7 27 237-263 66-92 (472)
64 TIGR02231 conserved hypothetic 33.1 5.4E+02 0.012 28.5 12.0 6 492-497 379-384 (525)
65 PF15070 GOLGA2L5: Putative go 32.7 5.6E+02 0.012 29.7 12.4 32 235-266 85-116 (617)
66 TIGR01010 BexC_CtrB_KpsE polys 32.5 4.3E+02 0.0092 27.6 10.7 60 240-299 173-237 (362)
67 PRK06975 bifunctional uroporph 32.3 8.4E+02 0.018 28.2 15.1 74 234-307 341-416 (656)
68 COG1196 Smc Chromosome segrega 31.9 1.1E+03 0.023 29.2 16.1 31 234-264 818-848 (1163)
69 PF00170 bZIP_1: bZIP transcri 31.8 2.1E+02 0.0046 22.6 6.6 27 281-307 31-57 (64)
70 PF12795 MscS_porin: Mechanose 31.8 5.2E+02 0.011 25.6 16.1 79 231-309 106-197 (240)
71 PF09304 Cortex-I_coil: Cortex 31.6 4.1E+02 0.0089 24.3 16.2 69 268-336 36-104 (107)
72 PRK03947 prefoldin subunit alp 31.6 3.9E+02 0.0085 24.1 11.5 35 234-268 17-51 (140)
73 KOG4643 Uncharacterized coiled 31.5 1.1E+03 0.023 29.5 14.5 54 249-302 374-427 (1195)
74 COG4942 Membrane-bound metallo 31.0 7.8E+02 0.017 27.4 19.4 22 406-427 315-336 (420)
75 KOG1962 B-cell receptor-associ 30.8 4.1E+02 0.0088 27.0 9.7 37 278-314 174-210 (216)
76 PRK14148 heat shock protein Gr 30.4 3.6E+02 0.0078 26.8 9.1 65 269-333 33-97 (195)
77 KOG2129 Uncharacterized conser 29.9 8.5E+02 0.018 27.5 14.7 30 271-300 248-277 (552)
78 PTZ00266 NIMA-related protein 29.9 1.2E+03 0.025 29.0 16.7 10 402-411 608-617 (1021)
79 PRK10869 recombination and rep 29.6 7.6E+02 0.016 27.9 12.6 32 234-265 258-289 (553)
80 PRK02119 hypothetical protein; 29.5 3.4E+02 0.0074 22.7 8.2 41 269-309 2-42 (73)
81 TIGR03185 DNA_S_dndD DNA sulfu 29.1 9.1E+02 0.02 27.6 16.2 47 215-261 369-415 (650)
82 PF08614 ATG16: Autophagy prot 28.9 5.3E+02 0.012 24.8 10.3 16 242-257 93-108 (194)
83 TIGR01069 mutS2 MutS2 family p 28.9 1E+03 0.022 28.2 15.8 43 245-287 512-554 (771)
84 PRK14474 F0F1 ATP synthase sub 28.7 6.3E+02 0.014 25.6 11.5 33 234-266 33-65 (250)
85 PF05597 Phasin: Poly(hydroxya 28.6 1.4E+02 0.003 27.8 5.7 57 234-290 69-130 (132)
86 PF07795 DUF1635: Protein of u 28.6 4.6E+02 0.0099 26.6 9.6 26 245-270 2-27 (214)
87 PF10211 Ax_dynein_light: Axon 28.6 5.6E+02 0.012 25.0 13.2 27 274-300 125-151 (189)
88 PRK15422 septal ring assembly 28.3 4E+02 0.0087 23.2 10.5 65 240-315 7-71 (79)
89 COG2433 Uncharacterized conser 28.3 6.3E+02 0.014 29.5 11.6 52 272-323 418-469 (652)
90 COG4026 Uncharacterized protei 28.2 6.9E+02 0.015 26.0 10.7 72 238-313 136-207 (290)
91 TIGR01000 bacteriocin_acc bact 27.9 8.1E+02 0.017 26.6 13.1 35 234-268 162-196 (457)
92 KOG4360 Uncharacterized coiled 27.8 5.4E+02 0.012 29.5 10.8 29 288-316 273-301 (596)
93 PF15070 GOLGA2L5: Putative go 27.5 4.4E+02 0.0096 30.5 10.5 66 239-315 24-105 (617)
94 TIGR02168 SMC_prok_B chromosom 27.5 1.1E+03 0.023 27.9 17.7 30 234-263 821-850 (1179)
95 PRK10361 DNA recombination pro 26.9 9.6E+02 0.021 27.1 17.8 51 247-298 39-89 (475)
96 PRK14143 heat shock protein Gr 26.7 4.9E+02 0.011 26.6 9.6 21 234-254 64-84 (238)
97 PRK09343 prefoldin subunit bet 26.0 5E+02 0.011 23.5 12.1 41 272-312 74-114 (121)
98 TIGR02168 SMC_prok_B chromosom 25.8 1.1E+03 0.025 27.7 17.6 40 277-316 261-300 (1179)
99 KOG3215 Uncharacterized conser 25.8 7.3E+02 0.016 25.3 13.0 76 234-309 30-119 (222)
100 KOG0992 Uncharacterized conser 25.5 1.1E+03 0.023 27.3 14.8 88 234-323 306-393 (613)
101 PF14193 DUF4315: Domain of un 25.4 3.3E+02 0.0071 23.7 6.9 35 277-311 2-36 (83)
102 PF05791 Bacillus_HBL: Bacillu 24.9 5.3E+02 0.012 24.8 9.1 17 234-250 84-100 (184)
103 TIGR00606 rad50 rad50. This fa 24.2 1.1E+03 0.025 29.3 13.8 76 234-309 709-784 (1311)
104 PRK13453 F0F1 ATP synthase sub 24.1 6.2E+02 0.013 24.0 11.4 32 234-265 46-77 (173)
105 KOG0995 Centromere-associated 24.1 1.2E+03 0.025 27.2 12.6 55 126-191 90-144 (581)
106 KOG0239 Kinesin (KAR3 subfamil 24.0 1.2E+03 0.026 27.3 16.6 47 270-316 235-281 (670)
107 KOG2391 Vacuolar sorting prote 23.8 9.4E+02 0.02 26.3 11.3 42 276-317 225-266 (365)
108 TIGR01010 BexC_CtrB_KpsE polys 23.8 8.4E+02 0.018 25.4 13.5 77 238-314 208-295 (362)
109 PF03961 DUF342: Protein of un 23.7 5.3E+02 0.011 28.1 9.8 29 237-265 334-362 (451)
110 KOG4302 Microtubule-associated 23.7 2.6E+02 0.0056 32.7 7.7 73 234-313 114-190 (660)
111 PF06818 Fez1: Fez1; InterPro 23.4 7.7E+02 0.017 24.8 12.3 94 239-332 82-198 (202)
112 PRK14162 heat shock protein Gr 23.3 4E+02 0.0087 26.4 8.0 58 275-332 38-95 (194)
113 COG1579 Zn-ribbon protein, pos 22.7 8.5E+02 0.018 25.0 17.8 81 234-323 56-136 (239)
114 PRK10929 putative mechanosensi 22.7 1.6E+03 0.034 28.1 15.0 56 264-319 175-237 (1109)
115 PF15290 Syntaphilin: Golgi-lo 22.6 9.5E+02 0.021 25.6 11.0 49 294-342 114-175 (305)
116 PRK03918 chromosome segregatio 22.3 1.3E+03 0.027 26.9 16.3 17 409-425 437-453 (880)
117 KOG3647 Predicted coiled-coil 22.1 9.8E+02 0.021 25.5 13.2 46 273-318 151-203 (338)
118 PRK14145 heat shock protein Gr 22.1 4.9E+02 0.011 25.9 8.4 61 273-333 42-102 (196)
119 PF15619 Lebercilin: Ciliary p 22.1 7.7E+02 0.017 24.3 12.6 54 234-287 79-136 (194)
120 PF12718 Tropomyosin_1: Tropom 22.0 6.6E+02 0.014 23.5 14.7 78 234-313 39-117 (143)
121 KOG4807 F-actin binding protei 22.0 4.5E+02 0.0097 29.4 8.6 57 256-312 506-562 (593)
122 TIGR02680 conserved hypothetic 21.5 1.7E+03 0.037 28.1 17.0 6 131-136 780-785 (1353)
123 PRK09039 hypothetical protein; 21.5 9.9E+02 0.021 25.4 15.0 74 238-311 75-151 (343)
124 PF11831 Myb_Cef: pre-mRNA spl 21.2 73 0.0016 32.0 2.5 13 166-178 202-214 (231)
125 TIGR02894 DNA_bind_RsfA transc 21.2 7.8E+02 0.017 24.0 10.2 27 276-302 118-144 (161)
126 PRK14154 heat shock protein Gr 21.1 6.4E+02 0.014 25.4 9.0 53 281-333 57-109 (208)
127 PF10267 Tmemb_cc2: Predicted 21.1 1.1E+03 0.025 25.9 13.1 78 234-317 241-318 (395)
128 PF10234 Cluap1: Clusterin-ass 20.6 9.8E+02 0.021 25.0 14.2 76 240-319 165-248 (267)
129 PRK11578 macrolide transporter 20.5 8.7E+02 0.019 25.3 10.4 18 248-265 117-134 (370)
130 TIGR01000 bacteriocin_acc bact 20.5 1.1E+03 0.024 25.5 15.4 10 101-110 90-99 (457)
131 PF07888 CALCOCO1: Calcium bin 20.4 1.3E+03 0.029 26.5 15.8 66 240-309 167-232 (546)
132 PRK03918 chromosome segregatio 20.4 1.4E+03 0.03 26.6 16.6 24 290-313 666-689 (880)
133 PRK11637 AmiB activator; Provi 20.4 1.1E+03 0.024 25.4 21.7 24 53-76 15-38 (428)
134 PF10498 IFT57: Intra-flagella 20.1 1.1E+03 0.024 25.4 13.5 36 284-319 253-288 (359)
135 PF10212 TTKRSYEDQ: Predicted 20.1 1.3E+03 0.029 26.4 15.7 60 244-307 420-479 (518)
No 1
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=100.00 E-value=5.7e-54 Score=418.21 Aligned_cols=201 Identities=42% Similarity=0.697 Sum_probs=173.6
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCcCCcccCCCCCCC---CCCCHHHHHHHHHHHHHHHHHhccCCCCC
Q 044525 1 MLTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLD---MHDSAKLEQRRQAELRRNLRLGLTSLPQP 77 (502)
Q Consensus 1 l~TPfrtpg~~g~Tp~~g~TP~~~~~~~g~TP~rTPlRD~L~IN~~~~---~~~tPr~~K~rq~~~K~~LRsgLaSLPkP 77 (502)
|+|||||||+ +|+||++.+ ++|+||++||+||+|+||++++ +..||++.|+++.++|++||+||++||+|
T Consensus 5 ~~t~~r~~~~------~g~TP~~~~-~~g~tp~~TP~RD~l~IN~~~~~~~~~~tp~~~k~~~~~~k~~Lr~~LasLP~P 77 (231)
T PF11831_consen 5 LATPFRTPSG------VGATPRRNG-GPGQTPLRTPLRDKLNINPEDGMSSVGDTPRDEKARQKAAKSQLRAGLASLPKP 77 (231)
T ss_pred ccCcccCCCC------CCcCCCCCC-CCCCCCCCCCCCccccCCccccccccccChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 6899999873 466666543 5678999999999999998653 24799999999999999999999999999
Q ss_pred CCcceeecCCCCCCC-CCcchhhccChHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCcccchHHHHhhhhccCCCCC
Q 044525 78 TNEYQIVVQPPAEED-EEPEEKIEEDMSDRLAREKAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKS 156 (502)
Q Consensus 78 KNDfEIvLPEeeeE~-ee~e~~~EEDAADrDaR~qaereaeEe~elkRRSQVVQRgLPRP~~Vn~~~Lr~~L~k~~~~~s 156 (502)
+|||||+||++++++ ++.+..++|||+|||+|++++++++++++|+||||||||+||||+.||..+|++. .
T Consensus 78 ~Nd~EI~lPe~e~~e~~~~~~~~eeDaad~d~r~~~~~~~~e~~e~~rRSqvvQR~LPRP~~v~~~~L~~~-~------- 149 (231)
T PF11831_consen 78 KNDYEIVLPEEEEEEDEEAEEEMEEDAADRDARERAEREEEEEKELKRRSQVVQRGLPRPSEVNESILRPA-E------- 149 (231)
T ss_pred CCeeeeecCCcccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhHHHHccCCCCCcccHHHHHhh-c-------
Confidence 999999999987443 3444567999999999999999999999999999999999999999999998843 1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhhhhcCCCchhhhhhhcccccccCCCCCCCCCccccCHHhHHHHHHHHHh
Q 044525 157 SFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEKVAKKKKGNKRSANGPTAPIPVIEDFEEDELQESFTLLSD 230 (502)
Q Consensus 157 ~~~plTdl~~aEeLI~~Em~~LL~hDa~kyPlpg~~~~~k~~~~e~a~~~~~~l~~Le~fsedeL~eA~~lI~~ 230 (502)
...+++++.+++||++||+.||+||+++||++|+++. ...+.|++|++++|..|+++|..
T Consensus 150 -~~~~~~~~~ae~lI~~Em~~Ll~~D~~~~P~~~~~~~-------------~~~~~~e~~~~e~l~~A~~li~~ 209 (231)
T PF11831_consen 150 -NPALTELDEAEELIKQEMATLLKHDAIKYPVPGGKPK-------------GKAPPYEDFSDEDLAEARELIQA 209 (231)
T ss_pred -ccCCcchHHHHHHHHHHHHHHHHhHhhhCCCCCCCCC-------------CCCCCcCCCCHHHHHHHHHHHHH
Confidence 1235668999999999999999999999999998633 22557899999999999999997
No 2
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-32 Score=288.54 Aligned_cols=198 Identities=37% Similarity=0.533 Sum_probs=137.6
Q ss_pred CCCcCCcccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCCCCcceeecCCCCCCCCCcchhhccChHHHHHHHHH
Q 044525 33 KGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKA 112 (502)
Q Consensus 33 ~rTPlRD~L~IN~~~~~~~tPr~~K~rq~~~K~~LRsgLaSLPkPKNDfEIvLPEeeeE~ee~e~~~EEDAADrDaR~qa 112 (502)
+++| |+ +||++.+|+...+ .||.||++||+||||||||+++++.| +|
T Consensus 382 ~~~p--d~-~iN~e~~~~~~~~-----------~Lr~~la~LP~PKNDfEiv~~~dE~E---------~~---------- 428 (617)
T KOG0050|consen 382 CRGP--DE-RINEESGMALKSR-----------SLRQGLASLPSPKNDFEIVLSEDEKE---------ED---------- 428 (617)
T ss_pred cCCC--cc-cCChhhhhhhHHH-----------HHHHHHhcCCCCCCcceeecCcccch---------hh----------
Confidence 4678 99 9999988754322 39999999999999999999543322 11
Q ss_pred HHHHHHHHHHHhhhHHHhhcCCCCcccchHHHHhhhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcCCCc-hh
Q 044525 113 EEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLD-EK 191 (502)
Q Consensus 113 ereaeEe~elkRRSQVVQRgLPRP~~Vn~~~Lr~~L~k~~~~~s~~~plTdl~~aEeLI~~Em~~LL~hDa~kyPlp-g~ 191 (502)
++.+++.+.+++|||||||+||||+.|| .++|++| |+.||+||..+||.- ..
T Consensus 429 e~~Ae~~~~~~~RsqviqrdlprP~~~n-~~~R~sl--------------------------mi~ll~~d~~~~P~~~d~ 481 (617)
T KOG0050|consen 429 ERIAEEKEFMKRRSQVIQRDLPRPPSVN-DAPRVSL--------------------------MIVLLAYDTLNYPPFKDF 481 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCchhh-hhhhhHH--------------------------HHHHHHhcccCCCCCCCC
Confidence 4455578889999999999999999999 8777641 778888888888821 11
Q ss_pred hh----hh----hccccccc----------------CCC---CCCCCCccccCHHhHHH-------HHHHHHhhhc---c
Q 044525 192 VA----KK----KKGNKRSA----------------NGP---TAPIPVIEDFEEDELQE-------SFTLLSDSRL---N 234 (502)
Q Consensus 192 ~~----~~----k~~~~e~a----------------~~~---~~~l~~Le~fsedeL~e-------A~~lI~~lKL---G 234 (502)
.. .+ +..+.++. .++ ...+.+-.+-.+..|+. |.+|-+++++ |
T Consensus 482 s~eel~~a~~llk~e~~~l~~dd~q~~~ec~s~~~~l~~~~~~~~~~~~~d~ae~~le~m~~~ak~~~klekKlk~~~~g 561 (617)
T KOG0050|consen 482 SQEELDNAYDLLKQEAEELVSDDYQFLKECLSRMQYLGSTYTRIQVATAEDPAEKELENMAKKAKRAEKLEKKLKHLLGG 561 (617)
T ss_pred CHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 00 00 00000000 000 01111111112333321 1222222222 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKEL 291 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eR 291 (502)
||.| .+|+|+|.++|.+|+...++|.||+.|..+|..|+++|+++|+++|.+|+.+
T Consensus 562 yq~r-~~l~kq~~~~~~~le~~~~e~~~f~~l~~qE~~Al~~R~~~lq~ev~~q~~~ 617 (617)
T KOG0050|consen 562 YQQR-EMLIKQIHHTLKALEEGQRELYTFEFLYRQEIRALPGRLERLQEEVNKQQEI 617 (617)
T ss_pred HHHH-HHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHhhccC
Confidence 9999 9999999999999999999999999999999999999999999999998753
No 3
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.10 E-value=29 Score=31.84 Aligned_cols=82 Identities=16% Similarity=0.200 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
.++.+...|...=..+.++|.....+.+.. .+...++..|+.++..+..|...+=+.|++-.++.++|+.-|
T Consensus 34 ~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~--------~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv 105 (120)
T PF12325_consen 34 SLQEELARLEAERDELREEIVKLMEENEEL--------RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADV 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 666666666666666666666655443333 356688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 044525 314 AERREQAQKA 323 (502)
Q Consensus 314 ~~~~~~~~~~ 323 (502)
...+...+.|
T Consensus 106 ~DlK~myr~Q 115 (120)
T PF12325_consen 106 QDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHH
Confidence 8888776665
No 4
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.16 E-value=54 Score=32.22 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=72.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
..+..-..|..-+..+-.+.+...-.|..|..... --..+..|+..+..++..+.--...|..+|..+..|+++|....
T Consensus 52 ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~-~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 52 EISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ-SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888888888888888888876553 45567889999999999999999999999999999999998775
Q ss_pred HHHHHHHHH
Q 044525 314 AERREQAQK 322 (502)
Q Consensus 314 ~~~~~~~~~ 322 (502)
+..-...++
T Consensus 131 ~~~i~evqQ 139 (201)
T PF13851_consen 131 ESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHH
Confidence 544443333
No 5
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.69 E-value=75 Score=31.24 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 237 KRAENLRDQIHSTVKQMETAGTELECFLALQKQEQ----------LAASSRINGLWEDVQKQKELERTLQQRYGDLSTEL 306 (502)
Q Consensus 237 aRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee----------~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~ 306 (502)
-+.+.|...|.++...++.+..|..+.+.|+..=. .-+|+.|....+||..+..+=|..|..|+.+...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999987644 44588899999999999999999999998887666
Q ss_pred HHHHH
Q 044525 307 ERISR 311 (502)
Q Consensus 307 e~L~~ 311 (502)
.....
T Consensus 92 k~~~~ 96 (194)
T PF15619_consen 92 KDKDE 96 (194)
T ss_pred HHHHH
Confidence 54433
No 6
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.20 E-value=91 Score=36.44 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 252 QMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKA 323 (502)
Q Consensus 252 qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~ 323 (502)
..+.++.++.-.-.+...+...=..+|..++++.+.+.++-..|.+||.+..+..+.|..+++.....+..+
T Consensus 555 ~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~ 626 (717)
T PF10168_consen 555 KQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQ 626 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555666666666666666666677777777777777777777777777777777777776666655443
No 7
>PRK10884 SH3 domain-containing protein; Provisional
Probab=76.03 E-value=52 Score=32.64 Aligned_cols=72 Identities=13% Similarity=0.235 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
+-..|...|.+++.++-++|.+...+ ...|...+++.|........+|...|.+|..++..++..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNT--------------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666666665533 2355566666666666666667777777777766666655
Q ss_pred HHHHHH
Q 044525 314 AERREQ 319 (502)
Q Consensus 314 ~~~~~~ 319 (502)
+...++
T Consensus 156 ~~l~~~ 161 (206)
T PRK10884 156 DAANLQ 161 (206)
T ss_pred HHHHHH
Confidence 554444
No 8
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=74.14 E-value=84 Score=36.26 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 044525 238 RAENLRDQIHSTVKQMETAGTELECFLALQ-----KQEQLAASSRINGLWEDVQKQKELERTLQQRYG-------DLSTE 305 (502)
Q Consensus 238 Rak~L~KkI~ea~~qLeqa~iEL~tF~~L~-----~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYr-------eL~~E 305 (502)
-..-|.+++.++-.+|.++..+++.|+.=. ..|..+...++..|+..+..+..++.+|..+|. .|..+
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~~ 347 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEK 347 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence 345588999999999999999999999854 446667778888888888888888888888774 45555
Q ss_pred HHHHHHHHHHHHHH
Q 044525 306 LERISRLIAERREQ 319 (502)
Q Consensus 306 ~e~L~~~v~~~~~~ 319 (502)
+..|+..+.++..+
T Consensus 348 ~~~L~~~~~~l~~~ 361 (726)
T PRK09841 348 RQTLEQERKRLNKR 361 (726)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555444
No 9
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=69.60 E-value=1.6e+02 Score=33.56 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=44.5
Q ss_pred cCHHhHHHHHHHHHh--hhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 044525 216 FEEDELQESFTLLSD--SRL-NVQKRAENLRDQIHSTVKQMETAGTELECFLALQ----------KQEQLAASSRINGLW 282 (502)
Q Consensus 216 fsedeL~eA~~lI~~--lKL-GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~----------~~Ee~AiprRle~Lr 282 (502)
+-+.++..|+.+|.+ ... .|+.-..+|+..+.++-..++.+.-.+.+++.=. ..|..-+.+|+..|.
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le 168 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALE 168 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 335578888888887 223 6666666666666666666666655444443221 234555566666666
Q ss_pred HHHHHHH
Q 044525 283 EDVQKQK 289 (502)
Q Consensus 283 EEV~rq~ 289 (502)
+++.++.
T Consensus 169 ~e~~~Lk 175 (546)
T KOG0977|consen 169 DELKRLK 175 (546)
T ss_pred HHHHHHH
Confidence 6666554
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=63.33 E-value=1.7e+02 Score=29.53 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=22.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFL 264 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~ 264 (502)
=|+.+...+..........+..+..|+...+
T Consensus 192 ~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r 222 (312)
T PF00038_consen 192 WYQSKLEELRQQSEKSSEELESAKEELKELR 222 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccchhHhHHHHHH
Confidence 7888888888888777777777776664443
No 11
>PRK11519 tyrosine kinase; Provisional
Probab=63.06 E-value=2e+02 Score=33.18 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Q 044525 238 RAENLRDQIHSTVKQMETAGTELECFLALQ-----KQEQLAASSRINGLWEDVQKQKELERTLQQRYG-------DLSTE 305 (502)
Q Consensus 238 Rak~L~KkI~ea~~qLeqa~iEL~tF~~L~-----~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYr-------eL~~E 305 (502)
-..-|.+++.++-.+|+.+...+..|+.=. ..|..+.-.++..++.+...+..++.+|..+|. .|..+
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~ 347 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAYRTLLEK 347 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHH
Confidence 344588889999999999999999998722 245556666777777777777788888887764 34444
Q ss_pred HHHHHHHHHHHHHH
Q 044525 306 LERISRLIAERREQ 319 (502)
Q Consensus 306 ~e~L~~~v~~~~~~ 319 (502)
+..|+..++++..+
T Consensus 348 ~~~L~~~~~~l~~~ 361 (719)
T PRK11519 348 RKALEDEKAKLNGR 361 (719)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444433
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=59.02 E-value=2.2e+02 Score=29.23 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
..+...+.+++++..+-..+ .+-....-|..|. .|...+.+|+..|..++..+..+...|+..--.|...+..+...+
T Consensus 63 ~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~-~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 63 QLESEIQEIRERIKRAEEKL-SAVKDERELRALN-IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666555555 4444444555554 344555667777777777777666666666666665555555555
Q ss_pred HHHHHH
Q 044525 314 AERREQ 319 (502)
Q Consensus 314 ~~~~~~ 319 (502)
.+.+..
T Consensus 141 ~e~~~~ 146 (239)
T COG1579 141 AEAEAR 146 (239)
T ss_pred HHHHHH
Confidence 544443
No 13
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.68 E-value=1.6e+02 Score=34.54 Aligned_cols=31 Identities=19% Similarity=0.351 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFL 264 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~ 264 (502)
--+.|...|..++..-.+.|.++..+++.++
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777776666653
No 14
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=57.99 E-value=1.3e+02 Score=26.44 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQK------------------QEQLAASSRINGLWEDVQKQKELERTL 295 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~------------------~Ee~AiprRle~LrEEV~rq~eREreL 295 (502)
.||.....+..++..+-.++..+.+-++.|..|.. .=...+..|++.+...+..+......|
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l 93 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERL 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777666666666666666555521 112457788888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 044525 296 QQRYGDLSTELERIS 310 (502)
Q Consensus 296 Q~rYreL~~E~e~L~ 310 (502)
++.+.++...+.++.
T Consensus 94 ~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 94 REQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888887776653
No 15
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.11 E-value=1.5e+02 Score=27.43 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYGDLSTELERIS 310 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~ 310 (502)
+..|++.|.-.|..+.+-|+.+|++|.+|..++..+.
T Consensus 75 L~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 75 LEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999888876553
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=55.92 E-value=3.9e+02 Score=31.18 Aligned_cols=84 Identities=20% Similarity=0.228 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQKQE--QLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRL 312 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~E--e~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~ 312 (502)
|..+.+.+...+.++-.+++.....++.++.+...+ -..+..+++.+.+.++....+=-+.+.+|..|..+...|...
T Consensus 473 ~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~ 552 (880)
T PRK02224 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAE 552 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 777777777788888888888888777777765432 223334444454444433333344555566666665555555
Q ss_pred HHHHHH
Q 044525 313 IAERRE 318 (502)
Q Consensus 313 v~~~~~ 318 (502)
+..|..
T Consensus 553 ~~~~~~ 558 (880)
T PRK02224 553 AEEKRE 558 (880)
T ss_pred HHHHHH
Confidence 544443
No 17
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=55.79 E-value=1.8e+02 Score=27.36 Aligned_cols=62 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQK---QEQLAASSRINGLWEDVQKQKELERTLQ 296 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~---~Ee~AiprRle~LrEEV~rq~eREreLQ 296 (502)
.+.+-..|.+++.+..+.+.....++...+.... .+......|+..+++.+....+.-++++
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333332222221 3334555666666666665555555555
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=55.47 E-value=1.7e+02 Score=27.17 Aligned_cols=67 Identities=13% Similarity=0.332 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 239 AENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERRE 318 (502)
Q Consensus 239 ak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~ 318 (502)
...+.|++..+++.|..++-+| ..||+.|-.-++.+.+.-+..++.-.++......+...++.+|.
T Consensus 45 ~~~v~kql~~vs~~l~~tKkhL--------------sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSSTKKHL--------------SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4456777777777777777654 37999999999999999999999888888888888777777765
Q ss_pred H
Q 044525 319 Q 319 (502)
Q Consensus 319 ~ 319 (502)
-
T Consensus 111 ~ 111 (126)
T PF07889_consen 111 M 111 (126)
T ss_pred H
Confidence 4
No 19
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=55.43 E-value=1.4e+02 Score=25.96 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=47.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQK------------------QEQLAASSRINGLWEDVQKQKELERTL 295 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~------------------~Ee~AiprRle~LrEEV~rq~eREreL 295 (502)
-|+.....|..++..+-.++..+..-++.+..|-. -=...+..|++.+..++.++......+
T Consensus 10 ~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l 89 (105)
T cd00632 10 QLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDL 89 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666555544444444310 112345677788888888777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 044525 296 QQRYGDLSTELERIS 310 (502)
Q Consensus 296 Q~rYreL~~E~e~L~ 310 (502)
++...++..++.+++
T Consensus 90 ~~~~~elk~~l~~~~ 104 (105)
T cd00632 90 QEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776653
No 20
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=54.41 E-value=3.9e+02 Score=32.79 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 236 QKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQ---LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 236 QaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee---~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
+.+...+..++..+..++..+..++..+......-. ..+.++++.++.++.....+...++.++..+..++..+..
T Consensus 673 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 751 (1163)
T COG1196 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333322 4566777888888888888888888888877766655433
No 21
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.39 E-value=1.4e+02 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAE 315 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~ 315 (502)
++.|++++..+..--..|......|..++...+.+|.+
T Consensus 27 ~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 27 NEELKEKNNELKEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433444444444444444444444443
No 22
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.67 E-value=2.5e+02 Score=27.96 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAG 257 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~ 257 (502)
-+.....|..++.++..+..+-.
T Consensus 98 le~el~~l~~~l~~~~~~~~~~~ 120 (206)
T PRK10884 98 LENQVKTLTDKLNNIDNTWNQRT 120 (206)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444333
No 23
>PRK11637 AmiB activator; Provisional
Probab=51.66 E-value=3.4e+02 Score=29.21 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 248 STVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAE 315 (502)
Q Consensus 248 ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~ 315 (502)
+...+++....++.....=...+...+..-....+..+..+....+..+....+|..+...|...|..
T Consensus 184 ~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 184 AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333334444444444555555555555555444443
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=51.38 E-value=5.3e+02 Score=31.91 Aligned_cols=74 Identities=8% Similarity=0.180 Sum_probs=48.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELE 307 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e 307 (502)
.|..+...+...|...-..|..+...+..|....+.+..+--.++..++.++..+..+-..|...|.++..+.+
T Consensus 310 ~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~ 383 (1201)
T PF12128_consen 310 ELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYN 383 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888888888888888888987666666655555555555555555444444444444433333
No 25
>PRK09039 hypothetical protein; Validated
Probab=50.72 E-value=2.9e+02 Score=29.36 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 269 QEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERIS 310 (502)
Q Consensus 269 ~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~ 310 (502)
+|-.++.+.+.+|...+...+.+.+++|.++..|..+++.+.
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555777778888888888888877777776666553
No 26
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=50.69 E-value=3.6e+02 Score=29.20 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=44.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~ 289 (502)
=--.|-+.|..+.+.+.----+...||.-.+.-+......+..-..++.+++.+++
T Consensus 218 Vtt~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq~kKrk~~estdsf~~eLKr~c 273 (410)
T KOG4715|consen 218 VTTARMQVLKRQVQSLMVHQRKLEAELLQIEERHQEKKRKFLESTDSFNNELKRLC 273 (410)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc
Confidence 34568888999988888877777888877777777788888888888888888776
No 27
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=50.45 E-value=89 Score=32.74 Aligned_cols=68 Identities=25% Similarity=0.339 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 252 QMETAGTELECFLALQKQE--QLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 252 qLeqa~iEL~tF~~L~~~E--e~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
+++.+.-|+++|......- ......-+..+.+++..+..-|.+|.+.+..|..+.+++...+.....+
T Consensus 17 ~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 17 QLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp -------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333221 1233444555666666666666666666666666666555544444333
No 28
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=49.82 E-value=2.8e+02 Score=27.76 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 241 NLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTE 305 (502)
Q Consensus 241 ~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E 305 (502)
.+-+.+.++|..+++..--+.+|+. +| +.|+..+.....|=+..++||..|...
T Consensus 87 s~E~sfsdl~~ryek~K~vi~~~k~---NE--------E~Lkk~~~ey~~~l~~~eqry~aLK~h 140 (207)
T PF05010_consen 87 SLEKSFSDLHKRYEKQKEVIEGYKK---NE--------ETLKKCIEEYEERLKKEEQRYQALKAH 140 (207)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH---hH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777776666665554 33 445555555555555556666666443
No 29
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.53 E-value=3.1e+02 Score=32.37 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 237 KRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAER 316 (502)
Q Consensus 237 aRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~ 316 (502)
.+.+.....+..+-..|....-++..++.=...+..-+..++..|++.+......-+.-|++...|..++..+.......
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~ 438 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGES 438 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 55555666666666666666666667777677788888999999999999999888888999999999998887666555
Q ss_pred HHHH
Q 044525 317 REQA 320 (502)
Q Consensus 317 ~~~~ 320 (502)
+..+
T Consensus 439 q~~L 442 (717)
T PF09730_consen 439 QGSL 442 (717)
T ss_pred HHHH
Confidence 5443
No 30
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=48.90 E-value=3e+02 Score=29.55 Aligned_cols=62 Identities=23% Similarity=0.195 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 244 DQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTE 305 (502)
Q Consensus 244 KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E 305 (502)
+.|..++++|.....|.+.-+.-...|...+..+|..|.+...-..+---.||..|++-.+-
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqel 69 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQEL 69 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777778889999999999988776655445688999865443
No 31
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.28 E-value=1.8e+02 Score=24.90 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERR 317 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~ 317 (502)
.+|-.+|..+.+.|.-..+| |+.|++....+..-...+|..-..|..+.+.|+..-.+|.
T Consensus 7 ekLE~KiqqAvdTI~LLQmE------------------ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQ 66 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQME------------------IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665555544 3444444444444445555555555555555555544444
No 32
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=46.94 E-value=1.1e+02 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=41.2
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 265 ALQKQEQLA--ASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAE 315 (502)
Q Consensus 265 ~L~~~Ee~A--iprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~ 315 (502)
.|...|..| +.||+..|..+|+.+...=-....+|..+..++++....+++
T Consensus 152 KLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 152 KLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred HHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555443 569999999999999999999999999999999987655543
No 33
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.86 E-value=3.2e+02 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECF 263 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF 263 (502)
..|.|...+..+-.++..+|.+...+++..
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444444444333
No 34
>PHA02562 46 endonuclease subunit; Provisional
Probab=45.82 E-value=4.3e+02 Score=28.88 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 241 NLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 241 ~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
.+.+++..+..++.....++.+|......-.......+..+++++..+...-..++.....|..++..+...+
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i 250 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDI 250 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445555555555555555555554444444444455556666655555555555555555555554444333
No 35
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=45.20 E-value=6.1e+02 Score=30.30 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 276 SRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERRE 318 (502)
Q Consensus 276 rRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~ 318 (502)
.-|+.+..+|.+|...-..+|.+-.+|......++...++.+-
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3456667777777766666666666666666666665555554
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=44.98 E-value=2.4e+02 Score=27.51 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQ 286 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~ 286 (502)
.++.....+.++|.++-..|+.+....... .|......+++.|+.++.
T Consensus 73 ~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~ 120 (188)
T PF03962_consen 73 KLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELK 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554443332 333444444444444433
No 37
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=44.83 E-value=1e+02 Score=27.36 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRI-----------------------------NGLWEDV 285 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRl-----------------------------e~LrEEV 285 (502)
|+.....|..+|..+...+.....-++++..|...+ .....+ ..+.+-.
T Consensus 11 l~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~--~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~ 88 (126)
T TIGR00293 11 LQQQVESLQAQIAALRALIAELETAIETLEDLKGAE--GKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAI 88 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHH
Confidence 556666677777777776766666667776665331 111111 3445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 286 QKQKELERTLQQRYGDLSTELERISRLIAERREQA 320 (502)
Q Consensus 286 ~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~ 320 (502)
.++.+|-..|.+....|...+..+...++.+...+
T Consensus 89 ~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 89 EFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666655554443
No 38
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=44.31 E-value=6.1e+02 Score=30.06 Aligned_cols=80 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQ---LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERIS 310 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee---~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~ 310 (502)
-|..|...|..-|..+-..+..+..|.+-+..+...-. ..+.--...||+|+...+.||..|=.-|.+|.+|.=.|+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45555555555555555555555555555554443211 122223357899999999999999999999988876665
Q ss_pred HHH
Q 044525 311 RLI 313 (502)
Q Consensus 311 ~~v 313 (502)
..|
T Consensus 111 Kqv 113 (717)
T PF09730_consen 111 KQV 113 (717)
T ss_pred HHH
Confidence 544
No 39
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.61 E-value=8e+02 Score=30.94 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 275 SSRINGLWEDVQKQKELERTLQQRYGDL 302 (502)
Q Consensus 275 prRle~LrEEV~rq~eREreLQ~rYreL 302 (502)
..++..+.++...+.++...++.+|..|
T Consensus 296 ~~~~~~~~~~~~~le~~~~~l~~~~~~l 323 (1353)
T TIGR02680 296 REEERELDARTEALEREADALRTRLEAL 323 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444445555555444
No 40
>PRK00106 hypothetical protein; Provisional
Probab=42.14 E-value=5.7e+02 Score=29.14 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYG 300 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYr 300 (502)
+.+|.+.|...-..+.++++.|..+-.
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kek 132 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQ 132 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544444444444444433
No 41
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=40.33 E-value=4.4e+02 Score=27.27 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQ 267 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~ 267 (502)
+|+.+...+..++..+-.++..+..++..++.|.
T Consensus 155 ~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~ 188 (423)
T TIGR01843 155 QLEAELAGLQAQLQALRQQLEVISEELEARRKLK 188 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555554
No 42
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.30 E-value=3e+02 Score=25.08 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKR 328 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~~~~~~ 328 (502)
+...+++.++.+|.....-=+.|+..|..+..+.+.+....+--.....++.+-..
T Consensus 52 ~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~~~e 107 (150)
T PF07200_consen 52 SLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAAASE 107 (150)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44578999999999888888999999999999888886655544444555543333
No 43
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.24 E-value=6.1e+02 Score=28.58 Aligned_cols=28 Identities=11% Similarity=0.212 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYGD 301 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYre 301 (502)
+.+|.+.|...=..+..+++.|..+..+
T Consensus 92 Lekr~e~Lekre~~Le~ke~~L~~re~e 119 (514)
T TIGR03319 92 LDRKMESLDKKEENLEKKEKELSNKEKN 119 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333333344444444444333
No 44
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.77 E-value=4.5e+02 Score=30.28 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTL---QQRYGDLSTELERISRL 312 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreL---Q~rYreL~~E~e~L~~~ 312 (502)
..+..+|.++-.++.+ ++..+..-..++-.++..|.+.|+..+..++.+=..+ +..|.+|..+.+..+..
T Consensus 319 ~~l~~qi~~l~~~i~~---e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~ 391 (754)
T TIGR01005 319 VAAKSSLADLDAQIRS---ELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQL 391 (754)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 3344444444444322 2223333334444555555555555555554443322 45555555555544433
No 45
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.72 E-value=6.2e+02 Score=30.83 Aligned_cols=110 Identities=20% Similarity=0.288 Sum_probs=0.0
Q ss_pred ccccCHH--hHHHHHHHHHh----------------------------------hhc-cHHHH----------HHHHHHH
Q 044525 213 IEDFEED--ELQESFTLLSD----------------------------------SRL-NVQKR----------AENLRDQ 245 (502)
Q Consensus 213 Le~fsed--eL~eA~~lI~~----------------------------------lKL-GYQaR----------ak~L~Kk 245 (502)
.+.|++. +|+.-.+|+.. .|+ ||..- -..-..+
T Consensus 346 ~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ek 425 (1265)
T KOG0976|consen 346 AEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEK 425 (1265)
T ss_pred hcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 246 IHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK------ELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 246 I~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~------eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
+.-+-..+.-+.-.++.|+.|...++....+=|+.-.+-|+++. +..|..-..|..|+.++++-...|+.....
T Consensus 426 ld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir~l~~sle~qrKVeqe~emlKaen~rqakkiefmkEe 505 (1265)
T KOG0976|consen 426 LDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIRALMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEE 505 (1265)
T ss_pred HHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHHHHhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 044525 320 AQK 322 (502)
Q Consensus 320 ~~~ 322 (502)
++.
T Consensus 506 iQe 508 (1265)
T KOG0976|consen 506 IQE 508 (1265)
T ss_pred HHH
No 46
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=38.39 E-value=4.4e+02 Score=29.12 Aligned_cols=42 Identities=5% Similarity=0.139 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
+..|.+-..+..++-.++..+-+++..+++++...+...+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555566666666666666665555555444
No 47
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=38.22 E-value=8.8e+02 Score=30.14 Aligned_cols=87 Identities=23% Similarity=0.366 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECF----------LALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLS 303 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF----------~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~ 303 (502)
+-|.|...|..+|.+....+..++-.+..+ ...+..|-..+-.++..++.+|..+...=++.|..|+.++
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k 371 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLK 371 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544222222 2233444444555555555555555555566666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044525 304 TELERISRLIAERREQA 320 (502)
Q Consensus 304 ~E~e~L~~~v~~~~~~~ 320 (502)
.+.+.|...|..++.+.
T Consensus 372 ~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666554
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=37.37 E-value=2.2e+02 Score=28.37 Aligned_cols=64 Identities=14% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
|..+...|..++.++-..++.+. +++..|...++.+...=......|..+..+++....-++
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE------------------~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAE------------------RRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH
Q 044525 315 ER 316 (502)
Q Consensus 315 ~~ 316 (502)
++
T Consensus 236 ~~ 237 (237)
T PF00261_consen 236 EM 237 (237)
T ss_dssp T-
T ss_pred CC
No 49
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.31 E-value=4.9e+02 Score=26.93 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELE 261 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~ 261 (502)
.|+++...+..++..+-.++.+....+.
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~ 168 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQ 168 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554443
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=36.74 E-value=4.1e+02 Score=31.60 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
-||.+...|.+-=.-+..+|.+..++++..+.= ..|+..++.++..+..|-..+=+.|++..++.++|.--+
T Consensus 870 hlq~e~~~le~~Rs~laeElvklT~e~e~l~ek--------~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl 941 (961)
T KOG4673|consen 870 HLQTELASLESIRSSLAEELVKLTAECEKLREK--------ADRVPGIKAELEDLRQRYAAALQMYGEKDEELEELRLDL 941 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhH
Confidence 789888888888888888999999998877643 378889999999999999998899999999999987766
Q ss_pred HHHHHHHHHH
Q 044525 314 AERREQAQKA 323 (502)
Q Consensus 314 ~~~~~~~~~~ 323 (502)
..+..-.+.|
T Consensus 942 ~dlK~mYk~Q 951 (961)
T KOG4673|consen 942 VDLKEMYKEQ 951 (961)
T ss_pred HHHHHHHHHH
Confidence 5555544444
No 51
>PF15556 Zwint: ZW10 interactor
Probab=36.66 E-value=4.8e+02 Score=26.67 Aligned_cols=90 Identities=23% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 222 QESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGT------------------ELECFLALQKQEQLAASSRINGLWE 283 (502)
Q Consensus 222 ~eA~~lI~~lKLGYQaRak~L~KkI~ea~~qLeqa~i------------------EL~tF~~L~~~Ee~AiprRle~LrE 283 (502)
.+|++--+++|--||.-...+.-.+..+.-+++.+.. ..+-|+.-+.+=...-.++|..|.+
T Consensus 62 i~aKeQWKeLKAtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae 141 (252)
T PF15556_consen 62 IEAKEQWKELKATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAE 141 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333334446665555444444444444443332 3333333344444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 284 DVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 284 EV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
-+..+.+|-+..|.....|..++..|..
T Consensus 142 ~sAEvrerq~~~qqeLe~l~qeL~~lkq 169 (252)
T PF15556_consen 142 VSAEVRERQTGTQQELERLYQELGTLKQ 169 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555533
No 52
>PRK11281 hypothetical protein; Provisional
Probab=36.52 E-value=9.4e+02 Score=29.98 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELEC-----------FLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDL 302 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~t-----------F~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL 302 (502)
+.|+|...-...+.++...+.+.+..|.. -+.+...|..++..++..++.+..-...+--.+|.+...+
T Consensus 153 ~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~ 232 (1113)
T PRK11281 153 SLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYL 232 (1113)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888888888888888888877744 3566677888888888888877776666666666555544
Q ss_pred HHHHHHHHH
Q 044525 303 STELERISR 311 (502)
Q Consensus 303 ~~E~e~L~~ 311 (502)
..+.+.++.
T Consensus 233 ~~~~~~~~~ 241 (1113)
T PRK11281 233 TARIQRLEH 241 (1113)
T ss_pred HHHHHHHHH
Confidence 444444433
No 53
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.00 E-value=5.4e+02 Score=31.11 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=11.7
Q ss_pred hhhHHHhhcCCCCcc
Q 044525 124 KRSKVLQRELPRPPV 138 (502)
Q Consensus 124 RRSQVVQRgLPRP~~ 138 (502)
-|+-.+|-+||--..
T Consensus 217 aR~aL~qS~Lpq~~L 231 (1118)
T KOG1029|consen 217 ARSALGQSGLPQNQL 231 (1118)
T ss_pred HHHHHHhcCCchhhH
Confidence 388899999996554
No 54
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.89 E-value=4.1e+02 Score=25.69 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 270 EQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 270 Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
+.......+..|+..+..+......|...|..|...+.+++.
T Consensus 92 ~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 92 RKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555444444444444444444433
No 55
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=35.62 E-value=8.1e+02 Score=29.02 Aligned_cols=6 Identities=33% Similarity=0.839 Sum_probs=2.7
Q ss_pred Ccceee
Q 044525 79 NEYQIV 84 (502)
Q Consensus 79 NDfEIv 84 (502)
+.|-|+
T Consensus 134 ~~~~~~ 139 (1164)
T TIGR02169 134 EGYNVV 139 (1164)
T ss_pred CcceEE
Confidence 345444
No 56
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=35.58 E-value=3.9e+02 Score=28.99 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQ----KQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLST 304 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~----~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~ 304 (502)
+-|.+++..+-.++.++..++..|+.=. ..+...+..|+..+...+......-..+|.++..|..
T Consensus 164 ~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 164 RFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665311 1122334455555555555555555555555554443
No 57
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.26 E-value=7.5e+02 Score=28.52 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 276 SRINGLWEDVQKQKELERTLQQRYG 300 (502)
Q Consensus 276 rRle~LrEEV~rq~eREreLQ~rYr 300 (502)
..+..|+.....+..+..++..+|.
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~ 312 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTML 312 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5677777777777777677777773
No 58
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=34.87 E-value=5.6e+02 Score=26.91 Aligned_cols=96 Identities=20% Similarity=0.308 Sum_probs=47.1
Q ss_pred HHHHHhccCCCCCCCcceeecCCCCCCCCCcchhhccChHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCcccchHHH
Q 044525 65 RNLRLGLTSLPQPTNEYQIVVQPPAEEDEEPEEKIEEDMSDRLAREKAEEEARQQALLRKRSKVLQRELPRPPVASLELI 144 (502)
Q Consensus 65 ~~LRsgLaSLPkPKNDfEIvLPEeeeE~ee~e~~~EEDAADrDaR~qaereaeEe~elkRRSQVVQRgLPRP~~Vn~~~L 144 (502)
..|...|+.||.|-..++...--. .....+..-..+.... -......+.+.-..+|..|.+-..+-.. |
T Consensus 8 ~~l~q~l~~l~~~eeK~~~L~kk~--------~ell~e~k~~~k~~~~--~~Kk~~~l~kek~~l~~E~~k~~~~k~K-L 76 (309)
T PF09728_consen 8 RQLMQSLNKLSSPEEKLEALCKKY--------AELLEEMKRLQKQLKK--LQKKQEQLQKEKDQLQSELSKAILAKSK-L 76 (309)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHH--------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 357777888888766665443211 0112223222222221 2233344445555667777654432111 1
Q ss_pred HhhhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhh
Q 044525 145 RNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNA 184 (502)
Q Consensus 145 r~~L~k~~~~~s~~~plTdl~~aEeLI~~Em~~LL~hDa~ 184 (502)
- .|- ..++.....|+.|...++..+-.
T Consensus 77 E-~LC------------RELQk~Nk~lkeE~~~~~~eee~ 103 (309)
T PF09728_consen 77 E-SLC------------RELQKQNKKLKEESKRRAREEEE 103 (309)
T ss_pred H-HHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 12466677888888887766543
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.50 E-value=1e+03 Score=29.70 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 238 RAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERR 317 (502)
Q Consensus 238 Rak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~ 317 (502)
+-..|.|+|.++.++.. .++..=..=..++---+..+++.+++.+..+.....+++..|..-..++..++..+..++
T Consensus 373 ~~d~l~k~I~~~~~~~~---~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTN---NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44445555555555551 111222222334445566667777777777777777777777777777776766666666
Q ss_pred HHHHHH
Q 044525 318 EQAQKA 323 (502)
Q Consensus 318 ~~~~~~ 323 (502)
......
T Consensus 450 k~i~~~ 455 (1074)
T KOG0250|consen 450 KKIENI 455 (1074)
T ss_pred HHHHHH
Confidence 654433
No 60
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=33.81 E-value=5.8e+02 Score=26.78 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 269 QEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERR 317 (502)
Q Consensus 269 ~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~ 317 (502)
.|...+.+.+..|+++...+.+.|......|..+..++-++........
T Consensus 71 ~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 71 KEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777777777777777777766666655544444333
No 61
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=33.52 E-value=4.4e+02 Score=29.48 Aligned_cols=49 Identities=24% Similarity=0.209 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCCCCchhccCCcccCCCCCCCC
Q 044525 324 AEEKRALELAEAQATANQAAEQVSEASESLPSEELGSSMAVDPPCDETT 372 (502)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (502)
.++.|+.+.+|.+.+.......-.-.+||.+.++....+.+..+.|.--
T Consensus 348 ~e~er~~~~ee~e~~R~~l~~es~lp~EP~a~~~~~~~l~iR~P~G~r~ 396 (460)
T KOG1363|consen 348 LEKERKEEEEERETARQLLALESSLPPEPSASEEEAITVAIRLPSGTRL 396 (460)
T ss_pred HhhhhhhHHHHHHHHHHHHhhhccCCCCCCcCcccceeeEEECCCCCee
Confidence 4444444455556655444322334456666677777788877766543
No 62
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=33.44 E-value=2e+02 Score=32.76 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
-..|++.|..+|...+.+|.+.+.....=-.....+---+.+.|..|...+.+. +..=...-+|+.+|++|...+.
T Consensus 136 vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~Lv~eLs 211 (552)
T COG1256 136 VLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQLVDELS 211 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHHHHHHH
Confidence 346888888888888888887776655444444444444444444444444444 2223456678888888866554
Q ss_pred HH
Q 044525 315 ER 316 (502)
Q Consensus 315 ~~ 316 (502)
++
T Consensus 212 ~~ 213 (552)
T COG1256 212 QL 213 (552)
T ss_pred hh
Confidence 43
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.17 E-value=5.1e+02 Score=29.23 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 237 KRAENLRDQIHSTVKQMETAGTELECF 263 (502)
Q Consensus 237 aRak~L~KkI~ea~~qLeqa~iEL~tF 263 (502)
.+.+.+++++..+..+=+....|-+.+
T Consensus 66 a~~k~~r~~~~~l~~~N~~l~~eN~~L 92 (472)
T TIGR03752 66 AEVKELRKRLAKLISENEALKAENERL 92 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555555544433
No 64
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=33.05 E-value=5.4e+02 Score=28.46 Aligned_cols=6 Identities=67% Similarity=1.292 Sum_probs=2.8
Q ss_pred CCccCC
Q 044525 492 LPLLNG 497 (502)
Q Consensus 492 ~~~~~~ 497 (502)
+|||-|
T Consensus 379 ~~Ll~G 384 (525)
T TIGR02231 379 FPLLPG 384 (525)
T ss_pred CcccCC
Confidence 444444
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=32.72 E-value=5.6e+02 Score=29.68 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLAL 266 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L 266 (502)
+|..+..|++.+..+..++..-..+.+.+..|
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L 116 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRL 116 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777776666555555555555
No 66
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.54 E-value=4.3e+02 Score=27.59 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQ-----KQEQLAASSRINGLWEDVQKQKELERTLQQRY 299 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~-----~~Ee~AiprRle~LrEEV~rq~eREreLQ~rY 299 (502)
.-+.+++..+-.++..+...|..|+.=+ ..+..+...-+..|+.+.......=.+++..|
T Consensus 173 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~ 237 (362)
T TIGR01010 173 AFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSIT 237 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3466677777777777777777776632 12222333444444444444443333444333
No 67
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=32.35 E-value=8.4e+02 Score=28.20 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=52.5
Q ss_pred cH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NV--QKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELE 307 (502)
Q Consensus 234 GY--QaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e 307 (502)
|| +.+...+..+|.....+......|...--.-...-...+..|+..|...+......-..||+.|.+|...++
T Consensus 341 ~~~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~ 416 (656)
T PRK06975 341 GYALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 56 345666777777777777777777655333233334567889999999999888888899999988865543
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.89 E-value=1.1e+03 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=19.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFL 264 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~ 264 (502)
..+.|...|.+.|..++.++..+...+.++.
T Consensus 818 ~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~ 848 (1163)
T COG1196 818 SLEQRRERLEQEIEELEEEIEELEEKLDELE 848 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666666666666666665555544
No 69
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=31.82 E-value=2.1e+02 Score=22.64 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 281 LWEDVQKQKELERTLQQRYGDLSTELE 307 (502)
Q Consensus 281 LrEEV~rq~eREreLQ~rYreL~~E~e 307 (502)
|...|..+...-..|...+..|..+..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 70
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.82 E-value=5.2e+02 Score=25.60 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=49.2
Q ss_pred hhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 231 SRL-NVQKRAENLRDQIHSTVKQMETAGTELECF-----LALQ-------KQEQLAASSRINGLWEDVQKQKELERTLQQ 297 (502)
Q Consensus 231 lKL-GYQaRak~L~KkI~ea~~qLeqa~iEL~tF-----~~L~-------~~Ee~AiprRle~LrEEV~rq~eREreLQ~ 297 (502)
.+| +.+.|...+...|.++...+......|... ..|. ..|..++..++..|+-+......|.--++.
T Consensus 106 ~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~ 185 (240)
T PF12795_consen 106 SQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQL 185 (240)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 444 888888999999999999998888888765 3444 445555555555555554444455444444
Q ss_pred HHHHHHHHHHHH
Q 044525 298 RYGDLSTELERI 309 (502)
Q Consensus 298 rYreL~~E~e~L 309 (502)
++..+......+
T Consensus 186 qrdl~~~~~~~l 197 (240)
T PF12795_consen 186 QRDLLKARIQRL 197 (240)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 71
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.61 E-value=4.1e+02 Score=24.34 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 268 KQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELAEAQ 336 (502)
Q Consensus 268 ~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~~~~~~~~~~~~~~ 336 (502)
..+.-.+...+..|+..-..+..|=.+||..|.++...++.-...-.....++..-.-..-.+|+.-++
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 556666888889999999999999999999999888887764333223333333333444456665333
No 72
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.56 E-value=3.9e+02 Score=24.13 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQK 268 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~ 268 (502)
-|+.....|..+|..+-..+.....-+++.+.|..
T Consensus 17 ~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~ 51 (140)
T PRK03947 17 ALQAQIEALQQQLEELQASINELDTAKETLEELKS 51 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 57777777777777777777777777777777763
No 73
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.54 E-value=1.1e+03 Score=29.46 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 249 TVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDL 302 (502)
Q Consensus 249 a~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL 302 (502)
+++.+-....=+.+|..|+..+--+.-+-+-.|..+-.++......|+++|.++
T Consensus 374 alkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql 427 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQL 427 (1195)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHH
Confidence 777777777777777777776655555555555555555555555555544444
No 74
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.01 E-value=7.8e+02 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=15.3
Q ss_pred ccCCCCCCcceeccCCCccccc
Q 044525 406 EEGKLPSHGVAVDTSGSSEVVK 427 (502)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~ 427 (502)
--|-+-+-||.|.++-+..|+-
T Consensus 315 ~~gg~~wkG~vi~a~~Ga~V~A 336 (420)
T COG4942 315 DGGGLRWKGMVIGASAGATVKA 336 (420)
T ss_pred CCCCccccceEEecCCCCeeee
Confidence 3455667788888877777764
No 75
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.76 E-value=4.1e+02 Score=27.00 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
++.+.++|..+..-=..+|+-|..|.++...|++.|+
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3444445555555555566666666666666665553
No 76
>PRK14148 heat shock protein GrpE; Provisional
Probab=30.42 E-value=3.6e+02 Score=26.79 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 269 QEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELA 333 (502)
Q Consensus 269 ~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~~~~~~~~~~~ 333 (502)
.|+.....+++.|.+++..+...-.++.++|..+..+.+.+..++..=+.++..-+..+-+..+-
T Consensus 33 ~e~~~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LL 97 (195)
T PRK14148 33 LEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELL 97 (195)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444556677777777777776677888888888888877766665555555555555555555
No 77
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=29.88 E-value=8.5e+02 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 271 QLAASSRINGLWEDVQKQKELERTLQQRYG 300 (502)
Q Consensus 271 e~AiprRle~LrEEV~rq~eREreLQ~rYr 300 (502)
-.+.-+-|..|+.||.++...=+.+|+.|.
T Consensus 248 a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ 277 (552)
T KOG2129|consen 248 AAAEKLHIDKLQAEVERLRTYLSRAQKSYQ 277 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444554444
No 78
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=29.85 E-value=1.2e+03 Score=29.00 Aligned_cols=10 Identities=20% Similarity=0.129 Sum_probs=4.1
Q ss_pred CcCcccCCCC
Q 044525 402 VPSFEEGKLP 411 (502)
Q Consensus 402 ~~~~~~~~~~ 411 (502)
||-.+-+++|
T Consensus 608 ~~~~~r~~~~ 617 (1021)
T PTZ00266 608 VHDSLRGGVH 617 (1021)
T ss_pred cchhhhcccc
Confidence 3344444443
No 79
>PRK10869 recombination and repair protein; Provisional
Probab=29.65 E-value=7.6e+02 Score=27.91 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=26.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLA 265 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~ 265 (502)
+|..+...+...+.+++..|+.+..++..|..
T Consensus 258 ~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~ 289 (553)
T PRK10869 258 GMDSKLSGVLDMLEEALIQIQEASDELRHYLD 289 (553)
T ss_pred hhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77778888888888888888888888876654
No 80
>PRK02119 hypothetical protein; Provisional
Probab=29.48 E-value=3.4e+02 Score=22.74 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 269 QEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERI 309 (502)
Q Consensus 269 ~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L 309 (502)
+|...+..||..|...|.+|..-=-+|-+.-.+-..+.+.|
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L 42 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKM 42 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778888888888887655444444333333333333
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.14 E-value=9.1e+02 Score=27.58 Aligned_cols=47 Identities=11% Similarity=0.233 Sum_probs=26.4
Q ss_pred ccCHHhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 215 DFEEDELQESFTLLSDSRLNVQKRAENLRDQIHSTVKQMETAGTELE 261 (502)
Q Consensus 215 ~fsedeL~eA~~lI~~lKLGYQaRak~L~KkI~ea~~qLeqa~iEL~ 261 (502)
+++..++.....++....-.++.+...|.++|..+-.+|......+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444333333322215667777777777777777776665554
No 82
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.88 E-value=5.3e+02 Score=24.81 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 044525 242 LRDQIHSTVKQMETAG 257 (502)
Q Consensus 242 L~KkI~ea~~qLeqa~ 257 (502)
+..+|..+..++....
T Consensus 93 l~~~L~~~~~~l~~l~ 108 (194)
T PF08614_consen 93 LAQQLVELNDELQELE 108 (194)
T ss_dssp ----------------
T ss_pred ccccccccccccchhh
Confidence 4444444444444433
No 83
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=28.86 E-value=1e+03 Score=28.16 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 245 QIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQK 287 (502)
Q Consensus 245 kI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~r 287 (502)
+++++...|+....+++....-...+...+.+..+.|.++...
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~ 554 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEE 554 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444444444444444444444443
No 84
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=28.65 E-value=6.3e+02 Score=25.60 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLAL 266 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L 266 (502)
....|.+...+.|.++-+....+...+.-|+..
T Consensus 33 ~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~ 65 (250)
T PRK14474 33 VMKKRQQRIANRWQDAEQRQQEAGQEAERYRQK 65 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888877777777776666554
No 85
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=28.58 E-value=1.4e+02 Score=27.84 Aligned_cols=57 Identities=19% Similarity=0.293 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGT-----ELECFLALQKQEQLAASSRINGLWEDVQKQKE 290 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~i-----EL~tF~~L~~~Ee~AiprRle~LrEEV~rq~e 290 (502)
.-+.+...+..++...|+.++++-- -|.-+..=-..|-.++..||..|...|.++..
T Consensus 69 ~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 69 QVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666666666666665432 23333334456777788888888888777653
No 86
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=28.56 E-value=4.6e+02 Score=26.64 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 245 QIHSTVKQMETAGTELECFLALQKQE 270 (502)
Q Consensus 245 kI~ea~~qLeqa~iEL~tF~~L~~~E 270 (502)
.|.|+--.|.-+.+||+..+.-+..|
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EE 27 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEE 27 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777778888777665544
No 87
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.55 E-value=5.6e+02 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYG 300 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYr 300 (502)
+..++..|..+...+..+-.++..++.
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333
No 88
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=28.29 E-value=4e+02 Score=23.20 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAE 315 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~ 315 (502)
..|-.+|..+.+.|.-...|++-++.= -..|.++++....--.+|...+..|+.+...-+.++.+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKek-----------n~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEK-----------NNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888887777765544421 12333344433333344555555555555555555444
No 89
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=28.28 E-value=6.3e+02 Score=29.53 Aligned_cols=52 Identities=21% Similarity=0.334 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 272 LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKA 323 (502)
Q Consensus 272 ~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~ 323 (502)
....+|+..+.+-|.++.+.-+.|+..-.++..+.+.|.+.+.++++.....
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~ 469 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDK 469 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888888888888888888777777665543
No 90
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.21 E-value=6.9e+02 Score=25.99 Aligned_cols=72 Identities=19% Similarity=0.222 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 238 RAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 238 Rak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
+...++.++.++.++-+...-++. -...|--+...||++|+-+..++.+.=+.|-..|..|...+++|...+
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~ele----ele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELE----ELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 334444455554444333333322 233455667778888888888888777777777777777777775543
No 91
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.88 E-value=8.1e+02 Score=26.58 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQK 268 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~ 268 (502)
-+++|...+..++..+..++.....++..++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556667777777777777777777777666665
No 92
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=27.81 E-value=5.4e+02 Score=29.52 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 288 QKELERTLQQRYGDLSTELERISRLIAER 316 (502)
Q Consensus 288 q~eREreLQ~rYreL~~E~e~L~~~v~~~ 316 (502)
...-++++|++|++++.++.+.++-++..
T Consensus 273 l~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 273 LTAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34557889999999999888776655443
No 93
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=27.54 E-value=4.4e+02 Score=30.47 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHH
Q 044525 239 AENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK----------------ELERTLQQRYGDL 302 (502)
Q Consensus 239 ak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~----------------eREreLQ~rYreL 302 (502)
...+..++..+..++.....+. ...-+|+..|...+..+. +.|..||..-..|
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk-----------~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L 92 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEK-----------EHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHL 92 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHH
Confidence 3335555666655555544333 233344444444444433 5666777777777
Q ss_pred HHHHHHHHHHHHH
Q 044525 303 STELERISRLIAE 315 (502)
Q Consensus 303 ~~E~e~L~~~v~~ 315 (502)
..+++.|...+..
T Consensus 93 ~kElE~L~~qlqa 105 (617)
T PF15070_consen 93 RKELESLEEQLQA 105 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777655543
No 94
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=27.49 E-value=1.1e+03 Score=27.88 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECF 263 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF 263 (502)
.++.+...|..++..+-.++.....++..+
T Consensus 821 ~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~ 850 (1179)
T TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEEL 850 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666655555555555554443
No 95
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.87 E-value=9.6e+02 Score=27.10 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 247 HSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQR 298 (502)
Q Consensus 247 ~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~r 298 (502)
..+..++..+...+.-|..+. .+......++..++.++..+..+-++++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 89 (475)
T PRK10361 39 EEMVAELSAAKQQITQSEHWR-AECELLNNEVRSLQSINTSLEADLREVTTR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444332221 222233334444444444444433334333
No 96
>PRK14143 heat shock protein GrpE; Provisional
Probab=26.69 E-value=4.9e+02 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=10.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQME 254 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLe 254 (502)
.+..+...|..+|..+-.++.
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~ 84 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELE 84 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 345555555555544443333
No 97
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.98 E-value=5e+02 Score=23.50 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 272 LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRL 312 (502)
Q Consensus 272 ~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~ 312 (502)
.-+..|++.+..++..+...+..|++.+.++...+.++...
T Consensus 74 ~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 74 KELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999999999888877554
No 98
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=25.85 E-value=1.1e+03 Score=27.65 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 277 RINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAER 316 (502)
Q Consensus 277 Rle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~ 316 (502)
.+..++..+..+...-..++..|..+..++..+...+...
T Consensus 261 ~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~ 300 (1179)
T TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRL 300 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444444333
No 99
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=7.3e+02 Score=25.34 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQ-----E---------QLAASSRINGLWEDVQKQKELERTLQQRY 299 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~-----E---------e~AiprRle~LrEEV~rq~eREreLQ~rY 299 (502)
||--+.+.|.++|.....++++..-++....++... + +..+.-=+-...+-|++-.+.||..|++|
T Consensus 30 ~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtqrv~e~nlre~e~~~q~k~Eiersi~~a~ 109 (222)
T KOG3215|consen 30 GGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQRVIEMNLREIENLVQKKLEIERSIQKAR 109 (222)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988777777776443 1 11111222233456777778899999998
Q ss_pred HHHHHHHHHH
Q 044525 300 GDLSTELERI 309 (502)
Q Consensus 300 reL~~E~e~L 309 (502)
.....-..+|
T Consensus 110 ~kie~lkkql 119 (222)
T KOG3215|consen 110 NKIELLKKQL 119 (222)
T ss_pred HHHHHHHHHH
Confidence 8765554444
No 100
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.48 E-value=1.1e+03 Score=27.25 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=65.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
-.+ +++-+.++=.+..+-|++...+|.+-..+-. |.--|..-+..++...+...-+..+.+-+|+....+.-+..+.-
T Consensus 306 eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c~-eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~se~~e~t 383 (613)
T KOG0992|consen 306 ELE-KAKDEIKQNDDKVKLIEELQDELSVALKECR-EENKIETQVNFERNKLQNEETEKKEEKTLLAAADDRFSEYSELT 383 (613)
T ss_pred HHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5666666777778888888888888777776 55588889999999999999999999999999888776665544
Q ss_pred HHHHHHHHHH
Q 044525 314 AERREQAQKA 323 (502)
Q Consensus 314 ~~~~~~~~~~ 323 (502)
...-..++.+
T Consensus 384 eqkleelk~~ 393 (613)
T KOG0992|consen 384 EQKLEELKVQ 393 (613)
T ss_pred HHHHHHHHHH
Confidence 3333334444
No 101
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=25.40 E-value=3.3e+02 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 277 RINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 277 Rle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
+|+.+..++.+...+=-++|.+++.|...+.++..
T Consensus 2 KleKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999888777744
No 102
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=24.85 E-value=5.3e+02 Score=24.82 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=12.8
Q ss_pred cHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTV 250 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~ 250 (502)
+|-.+.......|.++.
T Consensus 84 ~Y~~~f~syY~~L~~~i 100 (184)
T PF05791_consen 84 NYNTTFQSYYDTLVEAI 100 (184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888777777776666
No 103
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.24 E-value=1.1e+03 Score=29.29 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=49.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERI 309 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L 309 (502)
.+......-.+.+...++.+.........|..+...|-..+..++..+..++......-.++...+..+..+++.+
T Consensus 709 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~ 784 (1311)
T TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784 (1311)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3566666666677777777777777777787777666666777777776666666555444555555555554333
No 104
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=24.12 E-value=6.2e+02 Score=23.96 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLA 265 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~ 265 (502)
.-..|.....+.|.++-+...++..-+.-|+.
T Consensus 46 ~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 77 (173)
T PRK13453 46 VMDKRERDINRDIDDAEQAKLNAQKLEEENKQ 77 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44467777777777777777777666555543
No 105
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=24.10 E-value=1.2e+03 Score=27.16 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=36.5
Q ss_pred hHHHhhcCCCCcccchHHHHhhhhccCCCCCCCCCCCChHHHHHHHHHHHHHHHHhhhhcCCCchh
Q 044525 126 SKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIRKELLKLLEHDNAKYPLDEK 191 (502)
Q Consensus 126 SQVVQRgLPRP~~Vn~~~Lr~~L~k~~~~~s~~~plTdl~~aEeLI~~Em~~LL~hDa~kyPlpg~ 191 (502)
.++=+++|+-|+.=|...+...|+..-+ |..+.- .=|..|+..+|++ .+||.++.
T Consensus 90 ~~iS~k~l~~PS~KdF~~iFkfLY~~Ld------p~y~f~---~r~EeEV~~ilK~--L~YPf~~s 144 (581)
T KOG0995|consen 90 HPISIKLLMKPSVKDFIAIFKFLYGFLD------PDYEFP---ERIEEEVVQILKN--LKYPFLLS 144 (581)
T ss_pred CChhhhhcCCCccccHHHHHHHHHhccC------CCcccc---hhHHHHHHHHHHh--CCCCcccc
Confidence 3466788899988888776666664432 222211 4577888888886 78997764
No 106
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=23.97 E-value=1.2e+03 Score=27.32 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 270 EQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAER 316 (502)
Q Consensus 270 Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~ 316 (502)
...++.+++..|+.++..+....+.|-..+..+..+.++....+...
T Consensus 235 ~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 281 (670)
T KOG0239|consen 235 LESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTL 281 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777666666666666554444333
No 107
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.78 E-value=9.4e+02 Score=26.30 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 276 SRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERR 317 (502)
Q Consensus 276 rRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~ 317 (502)
.+++.++.+-..+.++|-+|-.-..+|..++++|...+....
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666655444333
No 108
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.77 E-value=8.4e+02 Score=25.40 Aligned_cols=77 Identities=12% Similarity=0.159 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q 044525 238 RAENLRDQIHSTVKQMETAGTELECFLALQ---KQEQLAASSRINGLWEDVQKQKEL--------ERTLQQRYGDLSTEL 306 (502)
Q Consensus 238 Rak~L~KkI~ea~~qLeqa~iEL~tF~~L~---~~Ee~AiprRle~LrEEV~rq~eR--------EreLQ~rYreL~~E~ 306 (502)
.+..+...|.++-.++..+..+|...+..- --+-..+..|+..|+..+..+..+ ....+..|.+|..+.
T Consensus 208 ~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~ 287 (362)
T TIGR01010 208 QSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQN 287 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 355677778888888888888877544311 123445566777777776665543 244455677776666
Q ss_pred HHHHHHHH
Q 044525 307 ERISRLIA 314 (502)
Q Consensus 307 e~L~~~v~ 314 (502)
+-.+...+
T Consensus 288 ~~a~~~y~ 295 (362)
T TIGR01010 288 ELAQQQLK 295 (362)
T ss_pred HHHHHHHH
Confidence 65544433
No 109
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.73 E-value=5.3e+02 Score=28.07 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 237 KRAENLRDQIHSTVKQMETAGTELECFLA 265 (502)
Q Consensus 237 aRak~L~KkI~ea~~qLeqa~iEL~tF~~ 265 (502)
.+...|.+.+.++.+++++....+..+..
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455555666665555555555444444
No 110
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.71 E-value=2.6e+02 Score=32.68 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECF----LALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERI 309 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF----~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L 309 (502)
||..+-..=++.|.+++.|+++...++..- ..+-.-|..-..+.++.|+..+. +||+.|...+++...+
T Consensus 114 ~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~-------~L~~ek~~Rlekv~~~ 186 (660)
T KOG4302|consen 114 GLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLN-------ELQKEKSDRLEKVLEL 186 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887 44555555555577887777765 4666666666665555
Q ss_pred HHHH
Q 044525 310 SRLI 313 (502)
Q Consensus 310 ~~~v 313 (502)
...|
T Consensus 187 ~~~I 190 (660)
T KOG4302|consen 187 KEEI 190 (660)
T ss_pred HHHH
Confidence 4443
No 111
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=23.41 E-value=7.7e+02 Score=24.82 Aligned_cols=94 Identities=17% Similarity=0.248 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 239 AENLRDQIHSTVKQMETAGTELECFLAL-------QK------------QEQLAASSRINGLWEDVQKQKELERTLQQRY 299 (502)
Q Consensus 239 ak~L~KkI~ea~~qLeqa~iEL~tF~~L-------~~------------~Ee~AiprRle~LrEEV~rq~eREreLQ~rY 299 (502)
+..|+.++..+-.++.....++.++..+ .. .......+.++.|+.++....++--..-.-|
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~F 161 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSF 161 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4456666666666666666666665111 01 1122233444555555544333322222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q 044525 300 GDLSTELERISRLIAERREQAQKA----AEEKRALEL 332 (502)
Q Consensus 300 reL~~E~e~L~~~v~~~~~~~~~~----~~~~~~~~~ 332 (502)
..=..-..+=...|-.|+.|+++- --+|++||-
T Consensus 162 e~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~ 198 (202)
T PF06818_consen 162 EQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALER 198 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222345677888887775 556777664
No 112
>PRK14162 heat shock protein GrpE; Provisional
Probab=23.34 E-value=4e+02 Score=26.43 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 275 SSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALEL 332 (502)
Q Consensus 275 prRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~~~~~~~~~~ 332 (502)
..++..|..++..+...-.+++++|..+..+.+.++.++..-+..+..-+..+-+..+
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~L 95 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDV 95 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455544444445556666666666665554444333333333333333333
No 113
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=22.72 E-value=8.5e+02 Score=25.05 Aligned_cols=81 Identities=17% Similarity=0.347 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
+|...-..+...|.++.+++..+...+..-.. .+.+.+|.-+++...+|...|-..-.+|+.++..|...+
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~---------~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIKRAEEKLSAVKD---------ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666655543333 355677888888888888888888888888888887777
Q ss_pred HHHHHHHHHH
Q 044525 314 AERREQAQKA 323 (502)
Q Consensus 314 ~~~~~~~~~~ 323 (502)
.+....+..+
T Consensus 127 ~~l~~~~~~~ 136 (239)
T COG1579 127 EDLKERLERL 136 (239)
T ss_pred HHHHHHHHHH
Confidence 6666665444
No 114
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.66 E-value=1.6e+03 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 264 LALQKQEQLAASSRINGLWEDVQKQKELERT-------LQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 264 ~~L~~~Ee~AiprRle~LrEEV~rq~eREre-------LQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
+.+...|..++..++..++-+..-...|--- +..++..+..+.+.|+..++..|.+
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554433333322 3344444444555555555555444
No 115
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.64 E-value=9.5e+02 Score=25.61 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH------HHHHHHHHHH--HHHHHHHHh
Q 044525 294 TLQQRYGDLSTELERISRLIAERREQAQ-----KA------AEEKRALELA--EAQATANQA 342 (502)
Q Consensus 294 eLQ~rYreL~~E~e~L~~~v~~~~~~~~-----~~------~~~~~~~~~~--~~~~~~~~~ 342 (502)
|+|-..++-..|..+|+..|+-.+.-|. +| -.+||-+|.- .|+++++-.
T Consensus 114 EAQLALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~ 175 (305)
T PF15290_consen 114 EAQLALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGS 175 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhcc
Confidence 5677777777777777666655554432 22 5667777743 677777554
No 116
>PRK03918 chromosome segregation protein; Provisional
Probab=22.28 E-value=1.3e+03 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=8.5
Q ss_pred CCCCCcceeccCCCccc
Q 044525 409 KLPSHGVAVDTSGSSEV 425 (502)
Q Consensus 409 ~~~~~~~~~~~~~~~~~ 425 (502)
..|.||--++.....++
T Consensus 437 ~Cp~c~~~L~~~~~~el 453 (880)
T PRK03918 437 KCPVCGRELTEEHRKEL 453 (880)
T ss_pred CCCCCCCcCCchhHHHH
Confidence 44556655555444443
No 117
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=22.14 E-value=9.8e+02 Score=25.54 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=25.4
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 044525 273 AASSRINGLWE----DVQKQKELERTLQQRYGDLSTELER---ISRLIAERRE 318 (502)
Q Consensus 273 AiprRle~LrE----EV~rq~eREreLQ~rYreL~~E~e~---L~~~v~~~~~ 318 (502)
-..+|++.|+. -.+.-.+-|.+||+.|..-...... |...++.+++
T Consensus 151 r~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 151 RTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 34456665553 2233345677788888766655443 3445555554
No 118
>PRK14145 heat shock protein GrpE; Provisional
Probab=22.11 E-value=4.9e+02 Score=25.90 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELA 333 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~~~~~~~~~~~ 333 (502)
..+..+..|++++..+...=.+|..+|..+..+.+.+..++..=+.++..-+..+-+..+-
T Consensus 42 ~~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LL 102 (196)
T PRK14145 42 QTVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELL 102 (196)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666777777777777766655554444444444444444444
No 119
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=22.09 E-value=7.7e+02 Score=24.30 Aligned_cols=54 Identities=15% Similarity=0.261 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQK----QEQLAASSRINGLWEDVQK 287 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~----~Ee~AiprRle~LrEEV~r 287 (502)
-|+.+...+.++|.+.-.+|.++..++..++.|-. -|..-+.+||..+...+..
T Consensus 79 ~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 79 KSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999998888743 2344445555555544443
No 120
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=21.98 E-value=6.6e+02 Score=23.47 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=47.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQ-KQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRL 312 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~-~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~ 312 (502)
+.+.|...|-..|..+-.+|..+...+.-=.... .+| ++.|||.-|.+++..-..+=+++..+.++.-..-+.+...
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E--~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE--QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5555555555555555555555444443333322 234 8889999999999988777777777776665555555443
Q ss_pred H
Q 044525 313 I 313 (502)
Q Consensus 313 v 313 (502)
|
T Consensus 117 v 117 (143)
T PF12718_consen 117 V 117 (143)
T ss_pred H
Confidence 3
No 121
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=21.97 E-value=4.5e+02 Score=29.37 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 256 AGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRL 312 (502)
Q Consensus 256 a~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~ 312 (502)
..-||+.+-+.+++|-..+..-|.+|++|++...+--+-.-.+|.+...|+--+...
T Consensus 506 dayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKak 562 (593)
T KOG4807|consen 506 DAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKAK 562 (593)
T ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHh
Confidence 345888899999999999999999999999999888888889999998888765544
No 122
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=21.52 E-value=1.7e+03 Score=28.15 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=3.0
Q ss_pred hcCCCC
Q 044525 131 RELPRP 136 (502)
Q Consensus 131 RgLPRP 136 (502)
+.+|.-
T Consensus 780 ~~~Ps~ 785 (1353)
T TIGR02680 780 AGAPSD 785 (1353)
T ss_pred HhCCCc
Confidence 455544
No 123
>PRK09039 hypothetical protein; Validated
Probab=21.49 E-value=9.9e+02 Score=25.37 Aligned_cols=74 Identities=18% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 238 RAENLRDQIHSTVKQMETAGTELECFLALQK---QEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 238 Rak~L~KkI~ea~~qLeqa~iEL~tF~~L~~---~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
+...|...|.++-.+|..+..+..-.+.... ........|+..|..++..+...=.+.+-....|..+.+.|..
T Consensus 75 ~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~ 151 (343)
T PRK09039 75 GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRR 151 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4444555555555555444444333222211 1122345556666555555544444444444444444444433
No 124
>PF11831 Myb_Cef: pre-mRNA splicing factor component; InterPro: IPR021786 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 73 to 279 amino acids in length.
Probab=21.20 E-value=73 Score=31.99 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 044525 166 QADEIIRKELLKL 178 (502)
Q Consensus 166 ~aEeLI~~Em~~L 178 (502)
.|.+||..||..|
T Consensus 202 ~A~~li~~E~~~~ 214 (231)
T PF11831_consen 202 EARELIQAEMEVV 214 (231)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 125
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.16 E-value=7.8e+02 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 276 SRINGLWEDVQKQKELERTLQQRYGDL 302 (502)
Q Consensus 276 rRle~LrEEV~rq~eREreLQ~rYreL 302 (502)
.+++.|..++..+..+-...++-|+.|
T Consensus 118 ~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 118 KRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 126
>PRK14154 heat shock protein GrpE; Provisional
Probab=21.12 E-value=6.4e+02 Score=25.37 Aligned_cols=53 Identities=11% Similarity=0.190 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 281 LWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQKAAEEKRALELA 333 (502)
Q Consensus 281 LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~~~~~~~~~~~~~ 333 (502)
|..++..+.+.-.+++++|..+..+.+.+..++.--+.++..-+..+-+..+-
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LL 109 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLL 109 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445667777777776666555544444444444444444433
No 127
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.06 E-value=1.1e+03 Score=25.88 Aligned_cols=78 Identities=14% Similarity=0.167 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
-|+.-..-+...+.+----++...-.++-+-.||.+|-..+..=|....|-|++|. -+|.+++.+-.+.++.+|
T Consensus 241 ~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs------~eRaRdi~E~~Es~qtRi 314 (395)
T PF10267_consen 241 QYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQS------YERARDIWEVMESCQTRI 314 (395)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHhHHHHHHHHHHHHH
Confidence 57777777888888888888888888899999999998777777777777777664 245555555566666555
Q ss_pred HHHH
Q 044525 314 AERR 317 (502)
Q Consensus 314 ~~~~ 317 (502)
.-.-
T Consensus 315 sklE 318 (395)
T PF10267_consen 315 SKLE 318 (395)
T ss_pred HHHH
Confidence 4443
No 128
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.62 E-value=9.8e+02 Score=24.99 Aligned_cols=76 Identities=16% Similarity=0.365 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQR-------YGDLSTELERISRL 312 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~r-------YreL~~E~e~L~~~ 312 (502)
+.|+..|..+-.++++..-.+... ..++.++...|+.-+-|+++.++|=..||.. |-.|..|++.+-..
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l----~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNL----ASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666555543 3577888889999999999999998888864 55555555555332
Q ss_pred -HHHHHHH
Q 044525 313 -IAERREQ 319 (502)
Q Consensus 313 -v~~~~~~ 319 (502)
+.-+|-.
T Consensus 241 Y~~kfRNl 248 (267)
T PF10234_consen 241 YVEKFRNL 248 (267)
T ss_pred HHHHHHhH
Confidence 4445544
No 129
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=20.50 E-value=8.7e+02 Score=25.27 Aligned_cols=18 Identities=11% Similarity=0.028 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044525 248 STVKQMETAGTELECFLA 265 (502)
Q Consensus 248 ea~~qLeqa~iEL~tF~~ 265 (502)
.+-.+++.+..+++-++.
T Consensus 117 ~a~~~l~~a~~~~~r~~~ 134 (370)
T PRK11578 117 QAEAELKLARVTLSRQQR 134 (370)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444433333333
No 130
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=20.47 E-value=1.1e+03 Score=25.53 Aligned_cols=10 Identities=10% Similarity=0.083 Sum_probs=4.1
Q ss_pred cChHHHHHHH
Q 044525 101 EDMSDRLARE 110 (502)
Q Consensus 101 EDAADrDaR~ 110 (502)
-|..+..+..
T Consensus 90 ld~~~~~~~~ 99 (457)
T TIGR01000 90 YDNGNEENQK 99 (457)
T ss_pred ECchHHHHHH
Confidence 3444444433
No 131
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=20.43 E-value=1.3e+03 Score=26.49 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERI 309 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L 309 (502)
..|.+.+..+-.+|....-+...++.- ........+.|..+..-+.....++..+-.+|..+...|
T Consensus 167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~----~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 167 EQLREEVERLEAELEQEEEEMEQLKQQ----QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333221 112223344444444444444444444444444444444
No 132
>PRK03918 chromosome segregation protein; Provisional
Probab=20.40 E-value=1.4e+03 Score=26.62 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 290 ELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 290 eREreLQ~rYreL~~E~e~L~~~v 313 (502)
.+=..+..+|..+..++..+...+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i 689 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRR 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 133
>PRK11637 AmiB activator; Provisional
Probab=20.36 E-value=1.1e+03 Score=25.40 Aligned_cols=24 Identities=13% Similarity=-0.053 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 044525 53 AKLEQRRQAELRRNLRLGLTSLPQ 76 (502)
Q Consensus 53 Pr~~K~rq~~~K~~LRsgLaSLPk 76 (502)
|+-...|...+...|=..|..+|.
T Consensus 15 ~~~~~~~~~~~~~ll~~~~~~~~~ 38 (428)
T PRK11637 15 PRRFAIRPILYASVLSAGVLLCAF 38 (428)
T ss_pred chhhhhhhHHHHHHHHHHHHHhhh
Confidence 443333333444444444444443
No 134
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=20.15 E-value=1.1e+03 Score=25.43 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 284 DVQKQKELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 284 EV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
-+++...||+-+=..+..|+.++..++..++..+.+
T Consensus 253 ~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 253 TLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333
No 135
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=20.12 E-value=1.3e+03 Score=26.36 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 244 DQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELE 307 (502)
Q Consensus 244 KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e 307 (502)
++|.++..++..+..-...|.. |-.+..+|+.....+-......=+++..++..|.+|+.
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~----Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~ 479 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYA----ECRALQKRLESAEKEKESLEEELKEANQNISRLQDELE 479 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555544444432 44556666666555555555555556666666666654
Done!