Query 044525
Match_columns 502
No_of_seqs 136 out of 181
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:38:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044525.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044525hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_B Anopheles plasmodium-re 69.0 1.1E+02 0.0039 31.7 15.8 53 267-319 507-559 (597)
2 3s9g_A Protein hexim1; cyclin 66.8 49 0.0017 28.6 10.0 69 242-311 11-79 (104)
3 3ghg_A Fibrinogen alpha chain; 66.6 26 0.00089 38.0 10.1 41 273-313 114-154 (562)
4 1ic2_A Tropomyosin alpha chain 64.2 55 0.0019 26.4 11.5 62 236-297 5-69 (81)
5 1m1j_A Fibrinogen alpha subuni 60.4 1.3E+02 0.0044 32.3 13.8 43 272-314 114-156 (491)
6 2zqm_A Prefoldin beta subunit 60.3 60 0.002 26.9 9.5 77 234-310 17-111 (117)
7 1deq_A Fibrinogen (alpha chain 56.3 1.1E+02 0.0038 32.0 12.3 43 272-314 116-158 (390)
8 3i00_A HIP-I, huntingtin-inter 54.5 97 0.0033 27.2 10.1 45 245-289 16-60 (120)
9 2wt7_A Proto-oncogene protein 49.7 87 0.003 24.1 8.4 36 278-313 25-60 (63)
10 3o0z_A RHO-associated protein 45.5 1.9E+02 0.0066 26.9 16.1 86 234-319 52-140 (168)
11 2yy0_A C-MYC-binding protein; 43.5 29 0.00099 26.4 4.3 32 283-314 19-50 (53)
12 2dfs_A Myosin-5A; myosin-V, in 41.8 4.8E+02 0.016 30.4 17.2 12 276-287 984-995 (1080)
13 2v66_B Nuclear distribution pr 39.6 1.9E+02 0.0065 25.2 15.5 68 244-311 3-70 (111)
14 3ol1_A Vimentin; structural ge 39.2 1.9E+02 0.0064 24.9 13.8 75 235-309 18-102 (119)
15 2aze_B Transcription factor E2 38.6 48 0.0016 28.4 5.4 38 274-311 4-41 (106)
16 3he5_B Synzip2; heterodimeric 38.4 1.1E+02 0.0039 22.8 6.6 43 273-315 7-49 (52)
17 3oja_B Anopheles plasmodium-re 37.9 3.6E+02 0.012 27.9 14.3 21 293-313 512-532 (597)
18 3o0z_A RHO-associated protein 36.7 2.6E+02 0.009 26.0 15.8 43 270-312 70-112 (168)
19 4gkw_A Spindle assembly abnorm 34.3 2.7E+02 0.0092 25.3 11.9 72 239-321 13-84 (167)
20 3u1c_A Tropomyosin alpha-1 cha 32.4 2.2E+02 0.0076 23.8 15.0 23 269-291 44-66 (101)
21 1jnm_A Proto-oncogene C-JUN; B 30.9 53 0.0018 25.2 4.1 31 289-319 21-51 (62)
22 3u59_A Tropomyosin beta chain; 30.3 2.4E+02 0.0081 23.5 15.0 30 270-299 45-74 (101)
23 1t2k_D Cyclic-AMP-dependent tr 29.5 1.8E+02 0.0063 22.0 8.6 32 278-309 24-55 (61)
24 2jee_A YIIU; FTSZ, septum, coi 28.8 2.5E+02 0.0085 23.3 10.9 24 240-263 9-32 (81)
25 3m91_A Proteasome-associated A 28.4 1.9E+02 0.0066 21.9 7.2 41 275-315 8-48 (51)
26 3na7_A HP0958; flagellar bioge 28.0 3.9E+02 0.013 25.3 18.2 45 273-317 101-145 (256)
27 3ghg_A Fibrinogen alpha chain; 27.5 5.2E+02 0.018 28.2 12.2 15 294-308 114-128 (562)
28 2oto_A M protein; helical coil 27.1 3.3E+02 0.011 24.1 11.5 28 275-302 56-83 (155)
29 1c1g_A Tropomyosin; contractIl 24.7 3.6E+02 0.012 23.7 14.8 86 235-320 186-274 (284)
30 1ci6_A Transcription factor AT 24.6 1.8E+02 0.0062 22.4 6.1 32 278-309 25-56 (63)
31 3swf_A CGMP-gated cation chann 24.3 2.9E+02 0.0099 22.6 7.4 41 281-321 5-45 (74)
32 3mq9_A Bone marrow stromal ant 24.3 5.6E+02 0.019 25.8 13.7 28 234-261 394-421 (471)
33 2d4y_A HAP1, flagellar HOOK-as 23.7 4.1E+02 0.014 27.3 10.5 77 236-314 70-146 (463)
34 1fxk_A Prefoldin; archaeal pro 23.4 3E+02 0.01 22.3 11.2 74 234-307 12-103 (107)
35 2v71_A Nuclear distribution pr 22.3 4.9E+02 0.017 24.5 15.8 92 240-331 52-144 (189)
36 3mov_A Lamin-B1; LMNB1, B-type 21.9 3.5E+02 0.012 22.6 9.1 24 297-320 65-88 (95)
37 1fxk_C Protein (prefoldin); ar 21.8 2.3E+02 0.0078 24.1 6.9 36 275-310 94-129 (133)
38 1lwu_A Fibrinogen alpha-1 chai 21.5 2.2E+02 0.0074 25.3 6.6 40 274-313 27-66 (119)
39 1hjb_A Ccaat/enhancer binding 21.2 2.2E+02 0.0076 23.6 6.4 34 287-320 33-66 (87)
40 2dfs_A Myosin-5A; myosin-V, in 20.9 1E+03 0.035 27.6 15.7 36 272-307 987-1022(1080)
41 3swy_A Cyclic nucleotide-gated 20.9 2.7E+02 0.0091 20.8 7.6 36 281-316 3-38 (46)
No 1
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.98 E-value=1.1e+02 Score=31.71 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 267 QKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 267 ~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
...+...+..|.+.+..+++++.+...+.++.|..+..++++++..+...+.+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 559 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAK 559 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhH
Confidence 33444555667777777777777777777777777777777776666555444
No 2
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.85 E-value=49 Score=28.62 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 242 LRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 242 L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
|.|.+.++|+.+-.-+++-=+ +.=.++|=.-+.+|++.+.++..++....+..-.+.++|..++++|..
T Consensus 11 l~KdFSe~YE~~h~ErL~~mS-KqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ 79 (104)
T 3s9g_A 11 LQRDFSETYERYHTESLQNMS-KQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRA 79 (104)
T ss_dssp ---CCHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Confidence 556666666554332221111 112356777788999999999988888777777777777777777644
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=66.58 E-value=26 Score=38.04 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
-+.+||+.|+++|+.|..+-+.||..-+++..+..+|...|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999987755
No 4
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.21 E-value=55 Score=26.35 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 236 QKRAENLRDQIHSTVKQMETAGTELECFLALQ---KQEQLAASSRINGLWEDVQKQKELERTLQQ 297 (502)
Q Consensus 236 QaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~---~~Ee~AiprRle~LrEEV~rq~eREreLQ~ 297 (502)
+.+-..|......+.+.++++...+.....-. ..|-.++.+||..|.+++++..++=..+|.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~ 69 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666655544322 344555556666666666555555444443
No 5
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=60.38 E-value=1.3e+02 Score=32.31 Aligned_cols=43 Identities=23% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 272 LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 272 ~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
..+.+|+..|++-|..+..+-+.||..-+.+..+..+|...|.
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999977664
No 6
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.28 E-value=60 Score=26.94 Aligned_cols=77 Identities=13% Similarity=0.189 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQE------------------QLAASSRINGLWEDVQKQKELERTL 295 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~E------------------e~AiprRle~LrEEV~rq~eREreL 295 (502)
-|+.+...|..+|..+-.++..+..-++.+..|-... ...+..|++.+..++..+......+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l 96 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKL 96 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888777777764211 2356788888888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 044525 296 QQRYGDLSTELERIS 310 (502)
Q Consensus 296 Q~rYreL~~E~e~L~ 310 (502)
+..+.++...+..+.
T Consensus 97 ~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 97 NEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776553
No 7
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.31 E-value=1.1e+02 Score=31.98 Aligned_cols=43 Identities=26% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 272 LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 272 ~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
..+.+|+..|++-|..+..+-+.||...+.+..+..+|...|+
T Consensus 116 ~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999987773
No 8
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=54.49 E-value=97 Score=27.20 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 245 QIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQK 289 (502)
Q Consensus 245 kI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~ 289 (502)
.|..+..+++....+++.|..=....-.-+..||..|..++..+.
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666667666655555555555566666666665554
No 9
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.66 E-value=87 Score=24.12 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
+..|..+|..+...-..|+.....|..+...|...+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666555444
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.46 E-value=1.9e+02 Score=26.89 Aligned_cols=86 Identities=16% Similarity=0.091 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQE---QLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERIS 310 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~E---e~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~ 310 (502)
-+|.+...|...-..+-.++......|+.=+.-..+- ..-...|+..|.+|+.+...++..++.--+.|.+.+-.|.
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544444444444322221 1235569999999999999998888777777777776665
Q ss_pred HHHHHHHHH
Q 044525 311 RLIAERREQ 319 (502)
Q Consensus 311 ~~v~~~~~~ 319 (502)
-..+.....
T Consensus 132 Ke~a~~eid 140 (168)
T 3o0z_A 132 KEKNNLEID 140 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhHH
Confidence 555444433
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.54 E-value=29 Score=26.43 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 283 EDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 283 EEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
.+|+.+..--.+||.+|..|..+.++|.+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666666667788888888888888877654
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.77 E-value=4.8e+02 Score=30.38 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 044525 276 SRINGLWEDVQK 287 (502)
Q Consensus 276 rRle~LrEEV~r 287 (502)
.++..|.+++..
T Consensus 984 ~~v~~L~~e~~~ 995 (1080)
T 2dfs_A 984 NRVLSLQEEIAK 995 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444443333
No 13
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.63 E-value=1.9e+02 Score=25.18 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 244 DQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 244 KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
|++.++.........|++.++.=..+-..-...-+..|+.++..+......++.+-|+|....+.|..
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 45556666666666666666665555555556678889999999999999999999999988888843
No 14
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.24 E-value=1.9e+02 Score=24.94 Aligned_cols=75 Identities=13% Similarity=0.243 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVK-------QMETAGTELECFLALQKQE---QLAASSRINGLWEDVQKQKELERTLQQRYGDLST 304 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~-------qLeqa~iEL~tF~~L~~~E---e~AiprRle~LrEEV~rq~eREreLQ~rYreL~~ 304 (502)
|..-...|+++|..+.. ++.++...++-|+.=-..| ...+..-+..|+.+|+...-.--.|+.+...|.+
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~e 97 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQE 97 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 55555556666655443 2333333444444322222 1223333445555555555555555555555555
Q ss_pred HHHHH
Q 044525 305 ELERI 309 (502)
Q Consensus 305 E~e~L 309 (502)
|+.=|
T Consensus 98 El~FL 102 (119)
T 3ol1_A 98 EIAFL 102 (119)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 15
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=38.64 E-value=48 Score=28.44 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
+..|+..|+.|+..+...|+.|-+.-+.+...+..+..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999998888777777666643
No 16
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.38 E-value=1.1e+02 Score=22.77 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAE 315 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~ 315 (502)
.+.+.|..|+.+.-.+.+-|..|.+..+.|..|..+|...+..
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677888888888888888888888888888888766544
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.88 E-value=3.6e+02 Score=27.88 Aligned_cols=21 Identities=14% Similarity=-0.024 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044525 293 RTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 293 reLQ~rYreL~~E~e~L~~~v 313 (502)
..+++++..+..+..+++..+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~ 532 (597)
T 3oja_B 512 THLKERQAFKLRETQARRTEA 532 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHhh
Confidence 333444444444444443333
No 18
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=36.75 E-value=2.6e+02 Score=25.97 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 270 EQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRL 312 (502)
Q Consensus 270 Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~ 312 (502)
|-+.+...|+.-+..-..-.++-++||.|...|..+++++...
T Consensus 70 e~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555667777777777777766554
No 19
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=34.32 E-value=2.7e+02 Score=25.34 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 239 AENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERRE 318 (502)
Q Consensus 239 ak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~ 318 (502)
...|...+..+..+++.-..||+....+..-| +.-|+.+..|...-|+..+.|..|...++..+.-...
T Consensus 13 ia~L~~D~~s~~~eleEnqeEL~iVgkML~EE-----------qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~ 81 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEENQEELEIVGNMLREE-----------QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQ 81 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567778888888888888888887777555 5789999999999999999999998888777655544
Q ss_pred HHH
Q 044525 319 QAQ 321 (502)
Q Consensus 319 ~~~ 321 (502)
+++
T Consensus 82 ~Lk 84 (167)
T 4gkw_A 82 LLK 84 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.39 E-value=2.2e+02 Score=23.80 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044525 269 QEQLAASSRINGLWEDVQKQKEL 291 (502)
Q Consensus 269 ~Ee~AiprRle~LrEEV~rq~eR 291 (502)
.|-.++.+|+..|.+++++...+
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~ 66 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEE 66 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666654443
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.88 E-value=53 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 289 KELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 289 ~eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
..+-.+|+..+..|..+...|...|..+..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666555555544443
No 22
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.30 E-value=2.4e+02 Score=23.46 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 270 EQLAASSRINGLWEDVQKQKELERTLQQRY 299 (502)
Q Consensus 270 Ee~AiprRle~LrEEV~rq~eREreLQ~rY 299 (502)
|-.++.+|+..|..+++....+=..++..+
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kL 74 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKL 74 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666665544444444333
No 23
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.50 E-value=1.8e+02 Score=21.96 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLSTELERI 309 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~~E~e~L 309 (502)
+..|..+|..+...-..|+.....|..+...|
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.84 E-value=2.5e+02 Score=23.27 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECF 263 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF 263 (502)
..|-.+|..+.+.|.-...|++.+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieEL 32 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEEL 32 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777666666554443
No 25
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.36 E-value=1.9e+02 Score=21.87 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 275 SSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAE 315 (502)
Q Consensus 275 prRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~ 315 (502)
..|+..|+..+..+..|...|-...++...++..|.+.|+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777666553
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=28.03 E-value=3.9e+02 Score=25.31 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERR 317 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~ 317 (502)
.+.+|+..|.+++..+..+--.++..+..+...+..+...+...+
T Consensus 101 ~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~ 145 (256)
T 3na7_A 101 IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELE 145 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444443333333
No 27
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.52 E-value=5.2e+02 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 044525 294 TLQQRYGDLSTELER 308 (502)
Q Consensus 294 eLQ~rYreL~~E~e~ 308 (502)
+|..+|..|+.+++.
T Consensus 114 ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555443
No 28
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=27.12 E-value=3.3e+02 Score=24.08 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 275 SSRINGLWEDVQKQKELERTLQQRYGDL 302 (502)
Q Consensus 275 prRle~LrEEV~rq~eREreLQ~rYreL 302 (502)
..++..|....+.+..+-++++..|..|
T Consensus 56 ~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 56 EKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555565555443
No 29
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=24.65 E-value=3.6e+02 Score=23.67 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLAL---QKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISR 311 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L---~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~ 311 (502)
+..+...+...+..+...+......+..+..- ...+...+..++..+...+......-..++..+..+..++..+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (284)
T 1c1g_A 186 SEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 265 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 044525 312 LIAERREQA 320 (502)
Q Consensus 312 ~v~~~~~~~ 320 (502)
.+..+..++
T Consensus 266 ~~~~~~~~~ 274 (284)
T 1c1g_A 266 KYKAISEEL 274 (284)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 30
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.55 E-value=1.8e+02 Score=22.41 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLSTELERI 309 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~~E~e~L 309 (502)
+..|..+|..+...-.+|..+-..|..|...|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 31
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.26 E-value=2.9e+02 Score=22.57 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 281 LWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQAQ 321 (502)
Q Consensus 281 LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~~ 321 (502)
|.+-|.++...=-.||.||+.|+.|....+..|-..-.++-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE 45 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVE 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666667999999999999888766654444443
No 32
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=24.25 E-value=5.6e+02 Score=25.80 Aligned_cols=28 Identities=7% Similarity=0.182 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELE 261 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~ 261 (502)
.......-|.++|.++-+-+.+++..-.
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhh
Confidence 6666777788888888877776665543
No 33
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=23.73 E-value=4.1e+02 Score=27.30 Aligned_cols=77 Identities=12% Similarity=0.156 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 236 QKRAENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIA 314 (502)
Q Consensus 236 QaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~ 314 (502)
-.+++.|..+|..++.+|...+.....=-.-...+--.+..+|..|-.++.+.+-. ..-.--.+|+.+|+.|...+.
T Consensus 70 l~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~~~--~~g~~~ndLlDqRD~ll~eLS 146 (463)
T 2d4y_A 70 IGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMTGV--GAGASPNDLLDQRDQLVSELN 146 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCchHhHHHHHHHHHHHH
Confidence 45788888888888888888887777666666666556666666666555432100 001234467777777644443
No 34
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.36 E-value=3e+02 Score=22.26 Aligned_cols=74 Identities=11% Similarity=0.160 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQ------------------EQLAASSRINGLWEDVQKQKELERTL 295 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~------------------Ee~AiprRle~LrEEV~rq~eREreL 295 (502)
-++.+...+..++..+-.++..+..-++.+..|-.. =...+..|++.+..++..+......+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888777777766421 12356778888888888777777777
Q ss_pred HHHHHHHHHHHH
Q 044525 296 QQRYGDLSTELE 307 (502)
Q Consensus 296 Q~rYreL~~E~e 307 (502)
+..+.++...+.
T Consensus 92 ~~~l~~lk~~l~ 103 (107)
T 1fxk_A 92 MKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777666554
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=22.34 E-value=4.9e+02 Score=24.47 Aligned_cols=92 Identities=10% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 240 ENLRDQIHSTVKQMETAGTELECFLALQKQEQLAASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQ 319 (502)
Q Consensus 240 k~L~KkI~ea~~qLeqa~iEL~tF~~L~~~Ee~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~ 319 (502)
..+-|++.++-..+.+...|++.++.=..+=..-...-+..|+.++..+...-..|+.+-++|-...+.|....-..-.-
T Consensus 52 ~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~S 131 (189)
T 2v71_A 52 VQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q ss_pred HHHH-HHHHHHHH
Q 044525 320 AQKA-AEEKRALE 331 (502)
Q Consensus 320 ~~~~-~~~~~~~~ 331 (502)
+.-- .--|+|+|
T Consensus 132 leD~e~kln~aiE 144 (189)
T 2v71_A 132 LEDFEQRLNQAIE 144 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 36
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=21.95 E-value=3.5e+02 Score=22.59 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 297 QRYGDLSTELERISRLIAERREQA 320 (502)
Q Consensus 297 ~rYreL~~E~e~L~~~v~~~~~~~ 320 (502)
.-|..|+.-+-.|..-|..||..+
T Consensus 65 ~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 65 NDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778777777777777777654
No 37
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.76 E-value=2.3e+02 Score=24.12 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 275 SSRINGLWEDVQKQKELERTLQQRYGDLSTELERIS 310 (502)
Q Consensus 275 prRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~ 310 (502)
.+|++.|.+.+..+.+....++.++..+...++++.
T Consensus 94 ~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 94 KSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555555555555555555555555555555443
No 38
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=21.50 E-value=2.2e+02 Score=25.25 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLI 313 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v 313 (502)
+.+||+-|+.-|..|.++-..||..-++=..+-.+|..-|
T Consensus 27 LrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveMkRLEVDI 66 (119)
T 1lwu_A 27 LERRIIHLQRRINMQLQQLTLLQHNIKTQVSQILRVEVDI 66 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5799999999999999999999999998888887776544
No 39
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.24 E-value=2.2e+02 Score=23.63 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 287 KQKELERTLQQRYGDLSTELERISRLIAERREQA 320 (502)
Q Consensus 287 rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~ 320 (502)
+-..++.+++.++..|..|...|...|..+..++
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777888777777777776555543
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=20.90 E-value=1e+03 Score=27.62 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 272 LAASSRINGLWEDVQKQKELERTLQQRYGDLSTELE 307 (502)
Q Consensus 272 ~AiprRle~LrEEV~rq~eREreLQ~rYreL~~E~e 307 (502)
......++.|++++.++.+-=..+++++.++..+++
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544455555555544333
No 41
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=20.87 E-value=2.7e+02 Score=20.79 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 281 LWEDVQKQKELERTLQQRYGDLSTELERISRLIAER 316 (502)
Q Consensus 281 LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~ 316 (502)
+.+-|.++..-=-.||.+|+.|+.|....+..+-..
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqR 38 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQR 38 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556665555678999999999998877665443
Done!