Query 044525
Match_columns 502
No_of_seqs 136 out of 181
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 06:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044525.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044525hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 59.8 36 0.0026 26.5 11.0 75 234-308 12-104 (107)
2 d2azeb1 e.63.1.2 (B:201-301) T 40.3 28 0.0021 27.7 6.3 34 277-310 2-35 (101)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 37.7 88 0.0064 24.5 11.0 33 235-267 13-45 (133)
4 d2ve8a1 a.4.5.67 (A:745-811) D 16.7 59 0.0043 24.1 3.7 27 221-248 6-44 (67)
5 d2j5pa1 a.4.5.67 (A:1261-1329) 16.4 70 0.0051 23.9 4.1 28 220-248 8-47 (69)
6 d1seta1 a.2.7.1 (A:1-110) Sery 14.1 2.5E+02 0.018 21.2 8.5 30 273-302 68-97 (110)
7 d2ayua1 d.305.1.1 (A:70-370) N 9.4 4.3E+02 0.031 23.7 8.3 47 274-320 23-69 (301)
8 d1ydxa1 d.287.1.2 (A:1-193) Bi 8.8 3.6E+02 0.026 20.8 6.7 26 278-303 153-178 (193)
9 d1ux5a_ a.207.1.1 (A:) Bni1 {B 8.0 7E+02 0.051 22.6 13.9 61 273-333 341-404 (411)
10 d2v4jc1 d.203.1.1 (C:3-105) Ds 7.0 65 0.0047 25.6 0.9 11 69-79 91-101 (103)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=59.82 E-value=36 Score=26.53 Aligned_cols=75 Identities=12% Similarity=0.188 Sum_probs=60.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------H-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 234 NVQKRAENLRDQIHSTVKQMETAGTELECFLALQKQ-----------------E-QLAASSRINGLWEDVQKQKELERTL 295 (502)
Q Consensus 234 GYQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~~~-----------------E-e~AiprRle~LrEEV~rq~eREreL 295 (502)
++|.....+..++..+-.++..+..-++.+..|-.. | ...+..|++.|..++..+...+..+
T Consensus 12 ~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l 91 (107)
T d1fxka_ 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888988888888888888888876421 1 2356789999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 044525 296 QQRYGDLSTELER 308 (502)
Q Consensus 296 Q~rYreL~~E~e~ 308 (502)
+..|.++..++..
T Consensus 92 ~~~l~~~~~~l~~ 104 (107)
T d1fxka_ 92 MKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999888877654
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.30 E-value=28 Score=27.67 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 277 RINGLWEDVQKQKELERTLQQRYGDLSTELERIS 310 (502)
Q Consensus 277 Rle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~ 310 (502)
|++.|+.|+..+...|+.|-+.-+.+...+..|.
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999887777777766654
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=37.67 E-value=88 Score=24.54 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 235 VQKRAENLRDQIHSTVKQMETAGTELECFLALQ 267 (502)
Q Consensus 235 YQaRak~L~KkI~ea~~qLeqa~iEL~tF~~L~ 267 (502)
|+.+...|.++|..+...+.....-.++.+.|.
T Consensus 13 l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 13 YQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555554444444444444444443
No 4
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.67 E-value=59 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=18.1
Q ss_pred HHHHHHHHHh------------hhccHHHHHHHHHHHHHH
Q 044525 221 LQESFTLLSD------------SRLNVQKRAENLRDQIHS 248 (502)
Q Consensus 221 L~eA~~lI~~------------lKLGYQaRak~L~KkI~e 248 (502)
+.+|.+++.. ++||| +||..|..++.+
T Consensus 6 y~~a~~~V~~~~kaS~S~lQR~l~IGY-nRAariid~LE~ 44 (67)
T d2ve8a1 6 YDEAVRFVTESRRASISAVQRKLKIGY-NRAARMIEAMEM 44 (67)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHTCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHhcch-HHHHHHHHHHHH
Confidence 5666666664 44599 588888777654
No 5
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=16.38 E-value=70 Score=23.86 Aligned_cols=28 Identities=14% Similarity=0.394 Sum_probs=19.2
Q ss_pred hHHHHHHHHHh------------hhccHHHHHHHHHHHHHH
Q 044525 220 ELQESFTLLSD------------SRLNVQKRAENLRDQIHS 248 (502)
Q Consensus 220 eL~eA~~lI~~------------lKLGYQaRak~L~KkI~e 248 (502)
-+.+|..++.. ++||| +||..|..++.+
T Consensus 8 ly~~a~~~V~~~~kaS~S~lQR~l~IGY-nRAariid~LE~ 47 (69)
T d2j5pa1 8 LFDQAVQFVTEKRKASISGVQRQFRIGY-NRAARIIEQMEA 47 (69)
T ss_dssp THHHHHHHHHHTTEEEHHHHHHHHTCCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHhccc-hHHHHHHHHHHH
Confidence 35677666665 44599 588888777665
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=14.12 E-value=2.5e+02 Score=21.24 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDL 302 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL 302 (502)
++-.++..|++++..+.....+++..+..+
T Consensus 68 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 68 ALIARGKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666655555555555554443
No 7
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.37 E-value=4.3e+02 Score=23.74 Aligned_cols=47 Identities=17% Similarity=0.153 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 274 ASSRINGLWEDVQKQKELERTLQQRYGDLSTELERISRLIAERREQA 320 (502)
Q Consensus 274 iprRle~LrEEV~rq~eREreLQ~rYreL~~E~e~L~~~v~~~~~~~ 320 (502)
+.+|+.+|+.--......|...|+.-.+|..+...+..-+-..|.++
T Consensus 23 v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~I 69 (301)
T d2ayua1 23 VKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRI 69 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 45667776666666666666666555555555555544444444443
No 8
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=8.84 E-value=3.6e+02 Score=20.76 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 278 INGLWEDVQKQKELERTLQQRYGDLS 303 (502)
Q Consensus 278 le~LrEEV~rq~eREreLQ~rYreL~ 303 (502)
+..|.+.+...++.=..|++.+..|+
T Consensus 153 l~~ld~~i~~~~~~i~~l~~~~~~ll 178 (193)
T d1ydxa1 153 LSVFDERLENLASLIEINRKLRDEYA 178 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 9
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.97 E-value=7e+02 Score=22.58 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044525 273 AASSRINGLWEDVQKQKELERTLQQRYGDL---STELERISRLIAERREQAQKAAEEKRALELA 333 (502)
Q Consensus 273 AiprRle~LrEEV~rq~eREreLQ~rYreL---~~E~e~L~~~v~~~~~~~~~~~~~~~~~~~~ 333 (502)
.+..++..|...+......=+.+-..|++= ....++.-..+..+..+......+|.+++.+
T Consensus 341 ~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~a~~en~~~~e~ 404 (411)
T d1ux5a_ 341 EARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKKAQAQNLAAEEE 404 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666555555555555531 2345566667777777776666666666554
No 10
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=6.97 E-value=65 Score=25.59 Aligned_cols=11 Identities=36% Similarity=0.751 Sum_probs=9.3
Q ss_pred HhccCCCCCCC
Q 044525 69 LGLTSLPQPTN 79 (502)
Q Consensus 69 sgLaSLPkPKN 79 (502)
..+|.||||+|
T Consensus 91 ~kiAGLPKP~~ 101 (103)
T d2v4jc1 91 CKMAGLPKPTG 101 (103)
T ss_dssp HHHHTCCCCCS
T ss_pred HHHhcCCCCCC
Confidence 56889999987
Done!