BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044527
(860 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 85/398 (21%), Positives = 159/398 (39%), Gaps = 41/398 (10%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 413 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 472
Query: 545 TANRSVYVDFTLPYTDMGIGMIV--PIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVW 602
T R +DF+ P+ +GI +++ P ++ FL PL +W+ I ++ V++
Sbjct: 473 TLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLF 532
Query: 603 IIER--PVN---DEFQGSRAHQ-------FGMIFWYSFSTLVFSQREKLFSNLS---KXX 647
++ R P +EF+ R Q FG+ FS F Q+ S S +
Sbjct: 533 LVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIV 592
Query: 648 XXXXXXXXXXXXXSYTATLASMLTIQQI--KLASMDNIGSQ----LGSVVPGALSNLNFK 701
SYTA LA+ LT++++ + S +++ Q G++ G+ F+
Sbjct: 593 GGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEF-FR 651
Query: 702 DSRLKKYNSAEEYANALSMGS-ISAIVDEIPYVR------AFLXXXXXXXXXXXXXXXXX 754
S++ ++ Y + + + + VR A+L
Sbjct: 652 RSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDT 711
Query: 755 --------XNGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSSNFMHEDX 806
G+G KGS L ++ A+ +L E+G L K++N W+ + +
Sbjct: 712 MKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECG-AKDSG 770
Query: 807 XXXXXXXXXLANFGGLFLITGISSTLALVIFLVTSIYK 844
L+N G+F I LA+++ L+ YK
Sbjct: 771 SKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYK 808
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 484 TVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTT 543
+GFCID+ K T+ F + G ++ G ++ +I +V++Q+ D A+G T
Sbjct: 58 CCKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKID-GVWNGMIGEVFYQRADMAIGSLT 116
Query: 544 ITANRSVYVDFTLPYTDMGIGMIV 567
I RS VDF++P+ + GI ++V
Sbjct: 117 INEERSEIVDFSVPFVETGISVMV 140
>pdb|3H6G|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6G|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly
pdb|3H6H|A Chain A, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3H6H|B Chain B, Crystal Structure Of The Glur6 Amino Terminal Domain Dimer
Assembly Mpd Form
pdb|3QLV|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|F Chain F, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|H Chain H, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|J Chain J, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 395
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 79/368 (21%), Positives = 152/368 (41%), Gaps = 43/368 (11%)
Query: 71 YAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQILADLGSR 130
+AVNT + R +L + D T NL + + C ++ A I S
Sbjct: 28 FAVNTINRNRTLLPNTTLTYD-----TQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 131 AKIPIISLFTTL--PNSLTSYSIQIDQDDEAS--------QSQARGISDFISVFKWKEVI 180
+ + S+ L P+ T + Q+ + ++ S +R I D + FKWK V
Sbjct: 83 SANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVT 142
Query: 181 LIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFV 240
++++D+T + L + ++ + R L + T D M + + V +
Sbjct: 143 VVYDDST--GLIRLQELIKAPSRYNLRLKIR---QLPADTKDAKPLLKEMKRGKEFHV-I 196
Query: 241 VHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVP 300
+H +A+ + A +GMM++ Y +I T T++ L ++D S + GFR
Sbjct: 197 FDCSHEMAAGILKQALAMGMMTEYYHYIFT--TLD-LFALDVEPYRYSGVNMTGFRILNT 253
Query: 301 TSKELHNFTLRWRREMYLNNPNAEVSELDAY----GILAYDTVWAVAKASEKLKTGQVSD 356
+ ++ + +W E P + LD + L YD V V+ A ++ VS
Sbjct: 254 ENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSS 313
Query: 357 ------------EIFYKQIVNNRFRGLSGDFQF--VNGKLTSSREFEIVNVIGKTIKRVG 402
F I + GL+G F NG L + + +++++ + ++++G
Sbjct: 314 LQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNG-LRTDFDLDVISLKEEGLEKIG 372
Query: 403 FWNPTTGI 410
W+P +G+
Sbjct: 373 TWDPASGL 380
>pdb|3QLT|A Chain A, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLT|B Chain B, Crystal Structure Of A Gluk2 (Glur6) Glycan Wedge
Homodimer Assembly
pdb|3QLU|C Chain C, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|D Chain D, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
Length = 395
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/368 (21%), Positives = 151/368 (41%), Gaps = 43/368 (11%)
Query: 71 YAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQILADLGSR 130
+AVNT + R +L + D T NL + + C ++ A I S
Sbjct: 28 FAVNTINRNRTLLPNTTLTYD-----TQKINLYDSFEASKKACDQLSLGVAAIFGPSHSS 82
Query: 131 AKIPIISLFTTL--PNSLTSYSIQIDQDDEAS--------QSQARGISDFISVFKWKEVI 180
+ + S+ L P+ T + Q+ + ++ S +R I D + FKWK V
Sbjct: 83 SANAVQSICNALGVPHIQTRWKHQVSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVT 142
Query: 181 LIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFV 240
++++D+T + L + ++ + R L + T D M + + V +
Sbjct: 143 VVYDDST--GLIRLQELIKAPSRYNLRLKIR---QLPADTKDAKPLLKEMKRGKEFHV-I 196
Query: 241 VHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVP 300
+H +A+ + A + MM++ Y +I T T++ L ++D S + GFR
Sbjct: 197 FDCSHEMAAGILKQALNMSMMTEYYHYIFT--TLD-LFALDVEPYRYSGVNMTGFRILNT 253
Query: 301 TSKELHNFTLRWRREMYLNNPNAEVSELDAY----GILAYDTVWAVAKASEKLKTGQVSD 356
+ ++ + +W E P + LD + L YD V V+ A ++ VS
Sbjct: 254 ENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTVSS 313
Query: 357 ------------EIFYKQIVNNRFRGLSGDFQF--VNGKLTSSREFEIVNVIGKTIKRVG 402
F I + GL+G F NG L + + +++++ + ++++G
Sbjct: 314 LQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNG-LRTDFDLDVISLKEEGLEKIG 372
Query: 403 FWNPTTGI 410
W+P +G+
Sbjct: 373 TWDPASGL 380
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 477 QSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFD 536
+ +N +GFCID+ K T+ F + G +V ++ +I +V +Q+
Sbjct: 49 EGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVN-NVWNGMIGEVVYQRAV 107
Query: 537 AAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567
AVG TI RS VDF++P+ + GI ++V
Sbjct: 108 MAVGSLTINEERSEVVDFSVPFVETGISVMV 138
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G QKGSP I A+ + +G + ++E +W
Sbjct: 242 GYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWL 278
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 662 YTATLASMLTIQQIKLASMDNIGSQLGSVVPGALS----NLNFKDSRLKKYNSAEEYANA 717
Y + LA+M+ + S+D++ ++ + G + + K ++++ + ++ A
Sbjct: 107 YDSGLAAMVQANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFPNIDQAYLA 166
Query: 718 LSMGSISAIVDEIPYVRAFLXXXXXXXXXXXXXXXXXXNGFGFVFQKGSPLVHDISRAIA 777
L G + A + + P V F + +G F KGSPLV ++ +A
Sbjct: 167 LEAGRVDAAMHDTPNV-LFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELA 225
Query: 778 RLREEGTLAKIENVWFNTQ 796
R++ +G AKI WF ++
Sbjct: 226 RMKADGRYAKIYKKWFGSE 244
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 523 YSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWI 577
++ LI + Q D A+ TI R +DF+ PY D G+ +V Q NN I
Sbjct: 71 FAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMV---QANNTTI 122
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+C+D+ K + L F + +P G + G ++ ++ ++ + D AV TIT
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +GI ++ PID +++
Sbjct: 93 YVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+C+D+ K + L F + +P G + G ++ ++ ++ + D AV TIT
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +GI ++ PID +++
Sbjct: 93 YVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+C+D+ K + L F + +P G + G ++ ++ ++ + D AV TIT
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +GI ++ PID +++
Sbjct: 93 YVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+C+D+ K + L F + +P G + G ++ ++ ++ + D AV TIT
Sbjct: 33 EGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 92
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +GI ++ PID +++
Sbjct: 93 YVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+C+D+ K + L F + +P G + G ++ ++ ++ + D AV TIT
Sbjct: 32 EGYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTIT 91
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +GI ++ PID +++
Sbjct: 92 YVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 125
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+CID+ K L F + G + G ++ ++ ++ K D AV TIT
Sbjct: 33 EGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTIT 92
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +G+ ++ PID +++
Sbjct: 93 HVREKAIDFSKPFMTLGVSILYRKGTPIDSADDL 126
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
EG+CID+ K L F + G + G ++ ++ ++ K D AV TIT
Sbjct: 35 EGYCIDLLKELAHILGFSYEIRLVEDGKYGAQDDKGQWNGMVKELIDHKADLAVAPLTIT 94
Query: 546 ANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
R +DF+ P+ +G+ ++ PID +++
Sbjct: 95 HVREKAIDFSKPFMTLGVSILYRKGTPIDSADDL 128
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
+GF IDV A + L F P G G+++ L+ ++ F++ D + TIT
Sbjct: 30 QGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTIT 89
Query: 546 ANRSVYVDFTLPYTDMGIGMIV 567
+R VDFT Y D +G+++
Sbjct: 90 PDRENVVDFTTRYXDYSVGVLL 111
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT 545
+GF IDV A + L F P G G+++ L+ ++ F++ D + TIT
Sbjct: 30 QGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFKRADIGISALTIT 89
Query: 546 ANRSVYVDFTLPYTDMGIGMIV 567
+R VDFT Y D +G+++
Sbjct: 90 PDRENVVDFTTRYMDYSVGVLL 111
>pdb|3OLZ|A Chain A, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
pdb|3OLZ|B Chain B, Crystal Structure Of The Gluk3 (Glur7) Atd Dimer At 2.75
Angstrom Resolution
Length = 398
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 114/285 (40%), Gaps = 56/285 (19%)
Query: 157 DEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISL 216
D AS S A I D + KW+ ++++D+T + R + +
Sbjct: 124 DYASLSHA--ILDLVQSLKWRSATVVYDDST-------------------GLIRLQELIM 162
Query: 217 ASSTHDQIIEKLSMLK--SLDTKVFVVHM------------THALASHLFLNAKKLGMMS 262
A S ++ I K+ L S D++ + M +H +A+ + A +GMM+
Sbjct: 163 APSRYN-IRLKIRQLPIDSDDSRPLLKEMKRGREFRIIFDCSHTMAAQILKQAMAMGMMT 221
Query: 263 KGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPN 322
+ Y +I T T++ L+++D S + GFR + + +W E P
Sbjct: 222 EYYHFIFT--TLD-LYALDLEPYRYSGVNLTGFRILNVDNPHVSAIVEKWSMERLQAAPR 278
Query: 323 AEVSELDAY----GILAYDTVWAVAKASEKLKTGQVSDEIFYKQ------------IVNN 366
AE LD L YD V V+ ++ V+ ++ I
Sbjct: 279 AESGLLDGVMMTDAALLYDAVHIVSVCYQRAPQMTVNSLQCHRHKAWRFGGRFMNFIKEA 338
Query: 367 RFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGI 410
++ GL+G F L + + +I+++ +++VG W+P G+
Sbjct: 339 QWEGLTGRIVFNKTSGLRTDFDLDIISLKEDGLEKVGVWSPADGL 383
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITCVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA-GSYSDLIDQVYFQKFDAAVGDTTI 544
EG+CID+ + L F + G + A G ++ ++ ++ K D AV I
Sbjct: 32 EGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDANGQWNGMVRELIDHKADLAVAPLAI 91
Query: 545 TANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
T R +DF+ P+ +GI ++ PID +++
Sbjct: 92 TYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 126
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFN 794
G+G KGSP I+ AI +L+EEG L ++ W+
Sbjct: 215 KGYGVGTPKGSPYRDKITIAILQLQEEGKLHMMKEKWWR 253
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTHLGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTHLGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTHLGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREEVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 33 EGYCIDLLRELSTILGF--TYE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89
Query: 542 TTITANRSVYVDFTLPYTDMGIGMI----VPIDQNNNM 575
IT R +DF+ P+ +GI ++ PID +++
Sbjct: 90 LAITYVREKVIDFSKPFMTLGISILYRKGTPIDSADDL 127
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAA----GSYSDLIDQVYFQKFDAAVGD 541
EG+CID+ + L F YE I V+ G A G ++ ++ ++ K D AV
Sbjct: 42 EGYCIDLLRELSTILGFT--YE-IRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 98
Query: 542 TTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIF 578
IT R +DF+ P+ +GI ++ N +F
Sbjct: 99 LAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVF 135
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 469 FVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLI 527
+V + + +++ EG+C+D+ F+ + G R A ++ ++
Sbjct: 16 YVMMKKNHEALEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMV 75
Query: 528 DQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
++ + K D A+ TIT R +DF+ P+ +GI +++ PI+ ++
Sbjct: 76 GELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 30 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 215 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 252
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 31 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 90
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 125
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 216 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 253
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 34 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 93
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 94 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 128
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 219 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 256
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 30 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 215 KGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWW 252
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 31 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 90
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 125
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 216 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 253
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 31 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 90
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 125
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 216 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 253
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWW 255
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 32 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 91
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 92 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 126
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 217 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 254
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 32 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 91
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 92 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 126
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 217 KGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWW 254
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 62 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 121
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 122 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 156
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 247 KGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWW 284
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 46 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 105
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 106 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 140
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 232 GYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 268
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLRTPVNLAVLKLSEQGVLDKLKNKWW 255
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 49 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 108
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 109 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 143
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 234 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 271
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLKNKWW 255
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWW 255
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGTPVNLAVLKLSEQGVLDKLKNKWW 255
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKWW 255
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 38.1 bits (87), Expect = 0.023, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + +P G R A ++ ++ ++ + K + A+ TI
Sbjct: 31 EGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTI 90
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 125
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E G L K++N W+
Sbjct: 217 GYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWW 253
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + +P G R A ++ ++ ++ + K + A+ TI
Sbjct: 29 EGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTI 88
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 123
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E G L K++N W+
Sbjct: 215 GYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWW 251
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 37.7 bits (86), Expect = 0.024, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + +P G R A ++ ++ ++ + K + A+ TI
Sbjct: 29 EGYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTKIWNGMVGELVYGKAEIAIAPLTI 88
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 123
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E G L K++N W+
Sbjct: 215 GYGVATPKGSSLRTPVNLAVLKLSEAGVLDKLKNKWW 251
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 30 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLCREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 216 GYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 252
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 45 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTI 104
Query: 545 TANRSVYVDFTLPYTDMGIGMIV 567
T R +DF+ P+ +GI +++
Sbjct: 105 TLVREEVIDFSKPFMSLGISIMI 127
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 235 GYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 271
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 36.6 bits (83), Expect = 0.066, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R A ++ ++ ++ + K D A+ TI
Sbjct: 30 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTKIWNGMVGELVYGKADIAIAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 216 GYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 252
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ F+ + G R ++ ++ ++ + K D A+ TI
Sbjct: 33 EGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDEDTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 127
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 218 KGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW 255
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 485 VEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTI 544
VEGF D+ KA A ++ + LI + KFDA G I
Sbjct: 24 VEGFGADIVKAVCKQ------------XQAVCTISNQPWDSLIPSLKLGKFDALFGGXNI 71
Query: 545 TANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLK 583
T R VDFT PY + I D+N + + + LK
Sbjct: 72 TTARQKEVDFTDPYYTNSVSFIA--DKNTPLTLSKQGLK 108
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + + G R ++ ++ ++ + + D AV TI
Sbjct: 30 EGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 215 KGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWW 252
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + + G R ++ ++ ++ + + D AV TI
Sbjct: 30 EGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L + ++ A+ +L E+G L K++N W+
Sbjct: 215 KGYGVATPKGSALGNAVNLAVLKLNEQGLLDKLKNKWW 252
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + + G R ++ ++ ++ + + D AV TI
Sbjct: 30 EGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 215 KGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWW 252
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + + G R ++ ++ ++ + + D AV TI
Sbjct: 49 EGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTI 108
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 109 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 143
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 234 KGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWW 271
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGS-YSDLIDQVYFQKFDAAVGDTTI 544
EG+C+D+ + + + G R ++ ++ ++ + + D AV TI
Sbjct: 30 EGYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETKIWNGMVGELVYGRADIAVAPLTI 89
Query: 545 TANRSVYVDFTLPYTDMGIGMIV----PIDQNNNM 575
T R +DF+ P+ +GI +++ PI+ ++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL 124
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWF 793
G+G KGS L ++ A+ +L E+G L K++N W+
Sbjct: 215 KGYGVATPKGSALGTPVNLAVLKLSEQGILDKLKNKWW 252
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 99/258 (38%), Gaps = 51/258 (19%)
Query: 167 ISDFISVFKWKEVILIHED----NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHD 222
I + ++WK V + +D + ND L L+ DI+I+ S S T
Sbjct: 145 ILKLLKHYQWKRVGTLTQDVQRFSEVRND-----LTGVLYGEDIEISDTESFSNDPCT-- 197
Query: 223 QIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI-------------A 269
+ LK D ++ + +A+ +F A + M Y WI
Sbjct: 198 ----SVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVH 253
Query: 270 TAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLR--WRREMYLNNPNAEVSE 327
T A + + L ++M+G +G +SK++ + + + E NN + V
Sbjct: 254 TEANSSRCLRKNLL---AAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGP 310
Query: 328 LDAYGILAYDTVWAVAKA-------------SEKLKTGQVSDEIFYKQIVN----NRFRG 370
+G AYD +W +AK ++++ +D + I+N F G
Sbjct: 311 SKFHG-YAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFG 369
Query: 371 LSGDFQFVNGKLTSSREF 388
++G F NG+ + +F
Sbjct: 370 VTGQVVFRNGERMGTIKF 387
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 6/140 (4%)
Query: 662 YTATLASMLTIQQIKLASMDNIGSQLGSVVPGALS----NLNFKDSRLKKYNSAEEYANA 717
Y + L M+ + S+ ++ ++ +V G S N K L+++ + +
Sbjct: 86 YKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPNIDNAYME 145
Query: 718 LSMGSISAIVDEIPYVRAFLXXXXXXXXXXXXXXXXXXNGFGFVFQKGSPLVHD-ISRAI 776
L A++ + P + F+ +G F KGS + D ++ A+
Sbjct: 146 LGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQ-YGIAFPKGSDELRDKVNGAL 204
Query: 777 ARLREEGTLAKIENVWFNTQ 796
LRE GT +I WF T+
Sbjct: 205 KTLRENGTYNEIYKKWFGTE 224
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITA 546
GF +D++ A L + YE P +S +I + + D A+ TIT
Sbjct: 26 GFDVDLWAAIAKELKLD--YELKPM----------DFSGIIPALQTKNVDLALAGITITD 73
Query: 547 NRSVYVDFTLPYTDMGIGMIVPIDQNNN 574
R +DF+ Y G++V + NNN
Sbjct: 74 ERKKAIDFSDGYYKS--GLLVMVKANNN 99
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 479 INSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAA 538
+++ + GF IDV A + E + S+ LI + F+KFDA
Sbjct: 22 VDADNKIVGFDIDVANAVCKEMQAECSF------------TNQSFDSLIPSLRFKKFDAV 69
Query: 539 VGDTTITANRSVYVDFTLPYTDMGIGMIV 567
+ +T R V F+ PY + G+ +V
Sbjct: 70 IAGMDMTPKREQQVSFSQPYYE-GLSAVV 97
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITA 546
G +DV++A ++ + Y V S S I V + D +G ++T
Sbjct: 29 GISLDVWRAVAESQKWNSEY-----------VRQNSISAGITAVAEGELDILIGPISVTP 77
Query: 547 NRSVY--VDFTLPYTDMGIGMIVP 568
R+ + FT PY GIG+++P
Sbjct: 78 ERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 13/84 (15%)
Query: 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITA 546
G +DV++A ++ + Y V S S I V + D +G ++T
Sbjct: 29 GISLDVWRAVAESQKWNSEY-----------VRQNSISAGITAVAEGELDILIGPISVTP 77
Query: 547 NRSVY--VDFTLPYTDMGIGMIVP 568
R+ + FT PY GIG+++P
Sbjct: 78 ERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|3OM0|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Crystallographic
Dimer At 1.4 Angstrom Resolution
pdb|3OM1|A Chain A, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3OM1|B Chain B, Crystal Structure Of The Gluk5 (Ka2) Atd Dimer At 1.7
Angstrom Resolution
pdb|3QLU|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLU|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD DIMER
ASSEMBLY
pdb|3QLV|A Chain A, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|B Chain B, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|E Chain E, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|G Chain G, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
pdb|3QLV|I Chain I, Crystal Structure Of The Gluk2GLUK5 (GLUR6KA2) ATD
TETRAMER ASSEMBLY
Length = 393
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 249 SHLFLN-AKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHN 307
SHL L A +LGM S Y +I T LH +D +V +SS ++GF + + H
Sbjct: 204 SHLVLRKASELGMTSAFYKYILTTMDFPILH-LDGIVEDSS--NILGFSMFNTS----HP 256
Query: 308 FTLRWRREMYLN-NPNAEVSELDAYGI---LAYDTVWAVAKASEKLKTGQ 353
F + R + ++ N E S + L +D V V A +L Q
Sbjct: 257 FYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ 306
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 517 RVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567
++ S+ LI + +KFD + TI+ R++ V+F PY +G ++V
Sbjct: 47 KLVPTSWDGLIPGLVTEKFDIIISGXTISQERNLRVNFVEPYIVVGQSLLV 97
>pdb|1XT8|A Chain A, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
pdb|1XT8|B Chain B, Crystal Structure Of Cysteine-Binding Protein From
Campylobacter Jejuni At 2.0 A Resolution
Length = 292
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQN 572
K D + + T T R+ VDF PY + +G+ VP D N
Sbjct: 106 KVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN 144
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 367 RFRGLSGDFQFVNGKLTSSREFEIVNVIGKTIKRVGFWN 405
RF GL+G+ QF ++ ++ + I+++G+WN
Sbjct: 331 RFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWN 369
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 231 LKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATA 271
LK L + + +++ T A+++F A +G+ GY WI +
Sbjct: 190 LKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 230
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 758 FGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQS 798
+G + SP I++A+ L+E GT + + WF+ + S
Sbjct: 186 YGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDPKNS 226
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 231 LKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATA 271
LK L + + +++ T A+++F A +G+ GY WI +
Sbjct: 189 LKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPS 229
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 457 LRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGG 516
LRIGV + V V D N+T + G+ +D+ + D + F + P
Sbjct: 10 LRIGVIESVPFTIVANVIDTSGRNTT-KLTGYVLDLIEYLRDKMGFVADVQLAP------ 62
Query: 517 RVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTD 560
SY+ L+ + +D A+GD T+T+ R V F+ +D
Sbjct: 63 --PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISD 104
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 19/120 (15%)
Query: 258 LGMMSKGYVWIATAATMNFLHSMDSLVVESSMQG---VVGFRRYVPTSKELHNFTLRWRR 314
LG S+GY ++ A + F +++E M G + GF+ + + F RW R
Sbjct: 208 LGKHSRGYHYML--ANLGFT----DILLERVMHGGANITGFQIVNNENPMVQQFIQRWVR 261
Query: 315 EMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQVSDEIFYKQIVNNRFRGLSGD 374
P A+ + L L +D + +A+A L+ +Q V+ RG +GD
Sbjct: 262 LDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLR----------RQRVDVSRRGSAGD 311
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQS 798
+GFG +K SP ++S +I + E G + ++ W Q+
Sbjct: 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC 290
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 756 NGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQS 798
+GFG +K SP ++S +I + E G + ++ W Q+
Sbjct: 248 SGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQEC 290
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,187,541
Number of Sequences: 62578
Number of extensions: 861566
Number of successful extensions: 1999
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1841
Number of HSP's gapped (non-prelim): 166
length of query: 860
length of database: 14,973,337
effective HSP length: 107
effective length of query: 753
effective length of database: 8,277,491
effective search space: 6232950723
effective search space used: 6232950723
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)