Query 044527
Match_columns 860
No_of_seqs 350 out of 3666
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 6E-94 2.1E-98 873.4 61.2 745 41-852 1-816 (823)
2 3o21_A Glutamate receptor 3; p 100.0 2E-47 6.8E-52 420.6 37.4 351 40-412 3-379 (389)
3 4f11_A Gamma-aminobutyric acid 100.0 2.3E-46 8E-51 419.9 33.6 366 40-449 12-426 (433)
4 3h6g_A Glutamate receptor, ion 100.0 8.5E-46 2.9E-50 410.0 35.4 358 40-413 2-383 (395)
5 4gpa_A Glutamate receptor 4; P 100.0 8.7E-45 3E-49 401.7 38.5 353 40-414 3-379 (389)
6 3hsy_A Glutamate receptor 2; l 100.0 2.6E-45 9E-50 402.4 32.2 348 42-412 2-373 (376)
7 3om0_A Glutamate receptor, ion 100.0 4.4E-45 1.5E-49 403.8 33.6 358 41-414 3-382 (393)
8 3saj_A Glutamate receptor 1; r 100.0 1.3E-44 4.5E-49 398.3 34.2 345 40-412 8-376 (384)
9 2e4u_A Metabotropic glutamate 100.0 5.1E-44 1.7E-48 412.0 40.1 375 40-453 12-486 (555)
10 3sm9_A Mglur3, metabotropic gl 100.0 9.4E-44 3.2E-48 400.6 39.1 352 40-405 11-462 (479)
11 1dp4_A Atrial natriuretic pept 100.0 2.8E-44 9.6E-49 403.5 33.6 380 41-453 1-424 (435)
12 1jdp_A NPR-C, atrial natriuret 100.0 9E-44 3.1E-48 399.7 36.9 354 40-409 7-397 (441)
13 3ks9_A Mglur1, metabotropic gl 100.0 1.4E-42 4.8E-47 392.8 37.0 355 40-406 15-475 (496)
14 3mq4_A Mglur7, metabotropic gl 100.0 2.5E-43 8.5E-48 398.5 26.3 354 40-405 14-467 (481)
15 3qek_A NMDA glutamate receptor 100.0 3E-42 1E-46 379.9 33.1 320 40-406 3-369 (384)
16 4f06_A Extracellular ligand-bi 100.0 6.3E-38 2.2E-42 343.3 30.3 336 40-398 3-352 (371)
17 3i45_A Twin-arginine transloca 100.0 1.2E-37 4.2E-42 343.6 30.1 345 40-411 3-364 (387)
18 4gnr_A ABC transporter substra 100.0 4.7E-37 1.6E-41 334.5 32.0 335 40-405 5-352 (353)
19 3h5l_A Putative branched-chain 100.0 3.7E-37 1.2E-41 343.6 28.2 335 40-398 12-388 (419)
20 3td9_A Branched chain amino ac 100.0 1.1E-36 3.8E-41 333.4 30.6 339 39-408 13-364 (366)
21 3hut_A Putative branched-chain 100.0 1E-35 3.4E-40 324.8 32.7 341 40-406 2-353 (358)
22 3i09_A Periplasmic branched-ch 100.0 8.9E-36 3E-40 327.3 32.3 330 40-397 2-342 (375)
23 3ipc_A ABC transporter, substr 100.0 5.4E-36 1.9E-40 326.7 29.8 339 41-407 1-352 (356)
24 3n0x_A Possible substrate bind 100.0 5.1E-36 1.7E-40 328.8 25.8 327 40-396 2-347 (374)
25 3qel_B Glutamate [NMDA] recept 100.0 4.7E-36 1.6E-40 325.2 24.1 317 40-406 2-351 (364)
26 3n0w_A ABC branched chain amin 100.0 8.1E-36 2.8E-40 328.1 26.3 330 40-397 4-346 (379)
27 3lkb_A Probable branched-chain 100.0 1.7E-35 5.7E-40 327.2 28.5 351 40-411 5-379 (392)
28 4evq_A Putative ABC transporte 100.0 3.8E-35 1.3E-39 322.5 30.6 339 40-406 14-363 (375)
29 3eaf_A ABC transporter, substr 100.0 6.5E-35 2.2E-39 322.2 31.3 344 40-408 2-373 (391)
30 1usg_A Leucine-specific bindin 100.0 4.9E-35 1.7E-39 317.8 29.5 334 41-401 1-345 (346)
31 4eyg_A Twin-arginine transloca 100.0 1.7E-34 5.9E-39 316.3 32.3 339 40-405 4-358 (368)
32 3lop_A Substrate binding perip 100.0 6.1E-35 2.1E-39 319.2 28.5 338 40-400 3-355 (364)
33 1pea_A Amidase operon; gene re 100.0 3.1E-32 1.1E-36 300.0 31.5 344 40-404 5-357 (385)
34 3sg0_A Extracellular ligand-bi 100.0 3E-33 1E-37 308.7 19.4 333 40-401 25-385 (386)
35 3snr_A Extracellular ligand-bi 100.0 1.2E-31 4E-36 293.1 23.5 332 40-401 5-361 (362)
36 3ckm_A YRAM (HI1655), LPOA; pe 99.9 6.8E-27 2.3E-31 250.6 19.7 311 43-404 3-322 (327)
37 2h4a_A YRAM (HI1655); perplasm 99.9 1.2E-26 4.2E-31 245.4 21.2 305 44-402 2-318 (325)
38 1yae_A Glutamate receptor, ion 99.9 4.8E-26 1.7E-30 242.6 16.6 263 454-799 12-291 (312)
39 3g3k_A Glutamate receptor, ion 99.9 8.4E-25 2.9E-29 226.4 17.0 238 454-799 3-257 (259)
40 2rc8_A Glutamate [NMDA] recept 99.9 8.8E-25 3E-29 230.5 14.5 242 454-799 4-292 (294)
41 1pb7_A N-methyl-D-aspartate re 99.9 1.9E-24 6.5E-29 227.4 15.9 237 455-799 41-290 (292)
42 4h5g_A Amino acid ABC superfam 99.9 5.2E-24 1.8E-28 218.0 16.5 223 455-795 12-238 (243)
43 2a5s_A N-methyl-D-aspartate re 99.9 1.7E-23 5.7E-28 219.4 16.9 245 454-799 4-282 (284)
44 2v3u_A Glutamate receptor delt 99.9 1.1E-22 3.7E-27 211.3 19.8 238 454-799 2-263 (265)
45 4gvo_A LMO2349 protein; struct 99.9 3.9E-23 1.3E-27 211.5 15.9 223 454-795 8-236 (243)
46 1mqi_A Glutamate receptor 2; G 99.9 1.7E-22 5.9E-27 209.5 19.1 239 454-799 3-261 (263)
47 3i6v_A Periplasmic His/Glu/Gln 99.9 8.2E-22 2.8E-26 200.1 19.5 217 454-799 4-222 (232)
48 3hv1_A Polar amino acid ABC up 99.9 2.8E-21 9.7E-26 200.9 19.4 221 454-795 20-249 (268)
49 3k4u_A Binding component of AB 99.9 2.7E-21 9.4E-26 198.1 19.0 226 454-799 4-233 (245)
50 4f3p_A Glutamine-binding perip 99.9 4.6E-21 1.6E-25 196.9 19.4 221 454-796 23-244 (249)
51 3kzg_A Arginine 3RD transport 99.9 8.2E-21 2.8E-25 193.4 19.6 225 455-799 3-235 (237)
52 3del_B Arginine binding protei 99.9 9.6E-21 3.3E-25 193.6 19.7 217 454-795 10-233 (242)
53 3tql_A Arginine-binding protei 99.9 1.7E-20 5.7E-25 189.5 19.5 220 455-793 2-227 (227)
54 3kbr_A Cyclohexadienyl dehydra 99.9 6.3E-21 2.2E-25 194.5 16.0 220 454-795 14-238 (239)
55 1ii5_A SLR1257 protein; membra 99.8 2.4E-20 8.3E-25 189.3 19.5 221 455-795 4-227 (233)
56 3mpk_A Virulence sensor protei 99.8 2.1E-20 7.2E-25 194.1 17.4 221 454-795 31-253 (267)
57 3h7m_A Sensor protein; histidi 99.8 4E-20 1.4E-24 187.8 18.9 220 454-795 10-231 (234)
58 4dz1_A DALS D-alanine transpor 99.8 7.1E-20 2.4E-24 189.2 19.3 221 454-795 28-254 (259)
59 1wdn_A GLNBP, glutamine bindin 99.8 9.5E-20 3.2E-24 183.8 18.9 219 455-795 3-223 (226)
60 4eq9_A ABC transporter substra 99.8 6E-20 2E-24 188.1 17.5 221 454-795 7-236 (246)
61 2y7i_A STM4351; arginine-bindi 99.8 2.4E-19 8.1E-24 181.4 19.7 219 454-794 5-228 (229)
62 1lst_A Lysine, arginine, ornit 99.8 9.2E-20 3.1E-24 185.8 16.7 222 454-795 3-233 (239)
63 2iee_A ORF2, probable ABC tran 99.8 1.4E-19 4.7E-24 188.4 16.2 221 454-794 20-246 (271)
64 2q88_A EHUB, putative ABC tran 99.8 2E-19 6.7E-24 185.7 17.1 224 454-794 12-240 (257)
65 2pyy_A Ionotropic glutamate re 99.8 2.4E-19 8.2E-24 181.1 16.1 220 455-795 3-223 (228)
66 4i62_A Amino acid ABC transpor 99.8 1.5E-18 5.2E-23 180.2 18.3 225 454-795 38-265 (269)
67 2vha_A Periplasmic binding tra 99.8 1.2E-18 4.2E-23 183.0 17.3 226 454-798 16-252 (287)
68 3qax_A Probable ABC transporte 99.8 2.6E-18 8.9E-23 178.3 19.4 218 454-795 30-254 (268)
69 2yln_A Putative ABC transporte 99.8 2.2E-18 7.5E-23 180.4 18.4 219 454-796 56-279 (283)
70 2pvu_A ARTJ; basic amino acid 99.8 4E-18 1.4E-22 177.4 19.3 219 454-795 41-263 (272)
71 1xt8_A Putative amino-acid tra 99.8 2.4E-18 8.1E-23 181.2 16.3 219 454-795 43-266 (292)
72 2yjp_A Putative ABC transporte 99.8 3.6E-18 1.2E-22 179.6 16.9 218 455-795 55-277 (291)
73 2v25_A Major cell-binding fact 99.6 4.6E-16 1.6E-20 160.3 10.6 214 454-793 37-258 (259)
74 2ozz_A Hypothetical protein YH 98.8 7.7E-09 2.6E-13 100.7 8.4 183 482-794 27-224 (231)
75 3n5l_A Binding protein compone 98.6 1.4E-07 4.9E-12 98.8 12.0 213 455-794 4-243 (310)
76 3p7i_A PHND, subunit of alkylp 98.6 2.9E-07 1E-11 96.7 12.6 213 454-793 13-251 (321)
77 3brq_A HTH-type transcriptiona 98.2 1.4E-05 5E-10 83.1 15.7 206 40-266 17-230 (296)
78 2qh8_A Uncharacterized protein 98.2 5.1E-05 1.8E-09 79.2 17.9 198 40-259 6-216 (302)
79 2qu7_A Putative transcriptiona 98.1 1.2E-05 4.1E-10 83.4 12.6 204 40-266 6-217 (288)
80 1dbq_A Purine repressor; trans 98.1 6.2E-05 2.1E-09 77.9 17.4 205 40-264 5-215 (289)
81 2h3h_A Sugar ABC transporter, 98.1 5.7E-05 1.9E-09 79.3 17.1 198 43-260 2-206 (313)
82 3ksm_A ABC-type sugar transpor 98.1 3.8E-05 1.3E-09 78.9 15.4 200 43-260 1-211 (276)
83 3rot_A ABC sugar transporter, 98.1 4.6E-05 1.6E-09 79.3 15.2 201 42-263 3-215 (297)
84 2rjo_A Twin-arginine transloca 98.0 0.00017 5.7E-09 76.4 19.4 203 40-261 3-222 (332)
85 1tjy_A Sugar transport protein 98.0 0.00015 5.2E-09 76.1 18.4 196 44-259 5-212 (316)
86 3d02_A Putative LACI-type tran 98.0 0.00016 5.5E-09 75.3 18.5 202 41-261 3-214 (303)
87 2h0a_A TTHA0807, transcription 98.0 3.7E-05 1.2E-09 79.1 13.1 204 44-269 1-213 (276)
88 3brs_A Periplasmic binding pro 98.0 0.00012 4.3E-09 75.6 17.2 203 41-261 4-215 (289)
89 2fn9_A Ribose ABC transporter, 98.0 0.00015 5E-09 75.2 17.6 198 43-260 3-215 (290)
90 2vk2_A YTFQ, ABC transporter p 98.0 0.00015 5E-09 75.8 17.7 206 42-266 2-221 (306)
91 3l49_A ABC sugar (ribose) tran 98.0 0.00012 4E-09 75.9 16.4 202 40-261 3-216 (291)
92 3c3k_A Alanine racemase; struc 98.0 0.00021 7.2E-09 73.8 17.9 205 40-269 6-217 (285)
93 2iks_A DNA-binding transcripti 97.9 0.00019 6.5E-09 74.4 17.0 207 40-268 18-229 (293)
94 2fep_A Catabolite control prot 97.9 0.00018 6.2E-09 74.4 16.4 206 40-266 14-225 (289)
95 3lkv_A Uncharacterized conserv 97.9 0.00033 1.1E-08 72.8 18.3 187 40-246 6-204 (302)
96 3h75_A Periplasmic sugar-bindi 97.9 0.00062 2.1E-08 72.6 20.8 207 42-266 3-235 (350)
97 3clk_A Transcription regulator 97.9 6.2E-05 2.1E-09 78.0 12.3 203 40-264 6-213 (290)
98 3d8u_A PURR transcriptional re 97.9 0.00024 8.1E-09 72.8 16.5 205 42-268 3-213 (275)
99 2hsg_A Glucose-resistance amyl 97.9 0.00011 3.9E-09 77.7 14.4 204 40-264 58-267 (332)
100 3dbi_A Sugar-binding transcrip 97.9 0.00014 4.7E-09 77.3 14.7 209 40-268 59-274 (338)
101 2o20_A Catabolite control prot 97.9 0.00014 4.9E-09 76.9 14.4 209 40-269 61-272 (332)
102 2x7x_A Sensor protein; transfe 97.9 0.0002 6.9E-09 75.5 15.5 202 40-260 4-212 (325)
103 2x26_A Periplasmic aliphatic s 97.8 0.00019 6.4E-09 75.1 14.8 115 676-794 101-232 (308)
104 2rgy_A Transcriptional regulat 97.8 0.00014 4.6E-09 75.4 13.5 206 40-266 6-219 (290)
105 3lft_A Uncharacterized protein 97.8 0.00048 1.6E-08 71.5 17.5 196 42-260 2-210 (295)
106 3k4h_A Putative transcriptiona 97.8 0.00024 8.4E-09 73.5 15.2 207 40-266 6-222 (292)
107 3bbl_A Regulatory protein of L 97.8 0.00015 5.1E-09 75.0 13.4 203 42-265 4-217 (287)
108 2fvy_A D-galactose-binding per 97.8 0.002 6.7E-08 67.2 22.2 201 43-259 3-226 (309)
109 3gbv_A Putative LACI-family tr 97.8 0.00023 7.8E-09 74.2 14.8 204 40-260 6-223 (304)
110 3ctp_A Periplasmic binding pro 97.8 9.2E-05 3.2E-09 78.4 11.7 203 40-269 58-264 (330)
111 3o74_A Fructose transport syst 97.8 0.00033 1.1E-08 71.6 15.6 201 43-266 3-209 (272)
112 3o1i_D Periplasmic protein TOR 97.8 0.00035 1.2E-08 72.8 15.4 203 40-261 3-218 (304)
113 3hcw_A Maltose operon transcri 97.8 0.00062 2.1E-08 70.6 17.0 208 40-269 5-225 (295)
114 3l6u_A ABC-type sugar transpor 97.7 0.00062 2.1E-08 70.4 16.9 201 40-261 6-220 (293)
115 3g1w_A Sugar ABC transporter; 97.7 0.0013 4.3E-08 68.6 19.3 203 42-261 4-212 (305)
116 2ioy_A Periplasmic sugar-bindi 97.7 0.0016 5.3E-08 67.0 19.7 196 44-260 3-207 (283)
117 3egc_A Putative ribose operon 97.7 0.00027 9.1E-09 73.2 13.4 208 40-268 6-218 (291)
118 3k9c_A Transcriptional regulat 97.7 0.00076 2.6E-08 69.7 16.6 205 41-268 11-217 (289)
119 3gv0_A Transcriptional regulat 97.7 0.00048 1.6E-08 71.1 14.8 205 40-266 6-218 (288)
120 3kke_A LACI family transcripti 97.7 0.00051 1.7E-08 71.6 14.7 202 40-264 13-225 (303)
121 1qpz_A PURA, protein (purine n 97.6 0.0012 4E-08 70.1 16.8 209 41-268 57-270 (340)
122 3g85_A Transcriptional regulat 97.6 0.00066 2.3E-08 70.1 14.2 206 40-268 9-220 (289)
123 3m9w_A D-xylose-binding peripl 97.6 0.0016 5.5E-08 68.0 17.0 200 42-261 2-213 (313)
124 3jy6_A Transcriptional regulat 97.6 0.0021 7.2E-08 65.7 17.3 205 40-270 5-215 (276)
125 3tb6_A Arabinose metabolism tr 97.5 0.00063 2.1E-08 70.5 13.5 208 43-269 16-234 (298)
126 3gyb_A Transcriptional regulat 97.5 0.00021 7.2E-09 73.5 9.4 201 40-266 3-206 (280)
127 3ksx_A Nitrate transport prote 97.5 0.0016 5.4E-08 68.5 15.8 89 675-765 126-219 (324)
128 3uif_A Sulfonate ABC transport 97.5 0.001 3.6E-08 70.7 14.4 178 492-778 35-227 (348)
129 8abp_A L-arabinose-binding pro 97.5 0.0018 6.2E-08 67.3 15.8 201 42-262 2-223 (306)
130 3bil_A Probable LACI-family tr 97.4 0.0021 7E-08 68.4 16.1 205 41-268 65-273 (348)
131 3qk7_A Transcriptional regulat 97.4 0.0012 4E-08 68.4 13.8 207 40-268 4-219 (294)
132 1jx6_A LUXP protein; protein-l 97.4 0.0021 7.3E-08 68.1 16.1 203 40-260 41-258 (342)
133 3kjx_A Transcriptional regulat 97.4 0.0011 3.9E-08 70.3 13.4 209 40-269 66-280 (344)
134 3cs3_A Sugar-binding transcrip 97.3 0.0048 1.6E-07 63.0 16.7 200 40-270 6-211 (277)
135 1byk_A Protein (trehalose oper 97.3 0.0054 1.8E-07 61.7 16.9 190 43-260 3-196 (255)
136 3e3m_A Transcriptional regulat 97.3 0.0061 2.1E-07 64.9 18.1 209 41-269 69-283 (355)
137 3huu_A Transcription regulator 97.2 0.0036 1.2E-07 65.0 14.6 201 40-265 20-231 (305)
138 3uug_A Multiple sugar-binding 97.2 0.0049 1.7E-07 64.8 15.5 205 42-264 3-232 (330)
139 3h5o_A Transcriptional regulat 97.2 0.0049 1.7E-07 65.2 15.5 207 40-269 60-272 (339)
140 3e61_A Putative transcriptiona 97.2 0.003 1E-07 64.6 13.3 202 40-270 6-211 (277)
141 1gud_A ALBP, D-allose-binding 97.1 0.021 7.1E-07 58.6 19.0 196 44-260 3-217 (288)
142 3un6_A Hypothetical protein sa 97.1 0.0017 5.9E-08 68.8 10.7 123 672-795 145-284 (341)
143 2fqx_A Membrane lipoprotein TM 97.1 0.021 7.1E-07 59.6 18.7 207 41-270 3-221 (318)
144 4fe7_A Xylose operon regulator 97.0 0.015 5E-07 63.3 17.8 205 40-268 23-235 (412)
145 3s99_A Basic membrane lipoprot 97.0 0.025 8.7E-07 59.6 18.6 201 40-260 24-230 (356)
146 3hs3_A Ribose operon repressor 97.0 0.009 3.1E-07 61.0 14.7 198 40-269 8-211 (277)
147 1jye_A Lactose operon represso 97.0 0.016 5.4E-07 61.5 17.1 204 41-269 60-271 (349)
148 2dri_A D-ribose-binding protei 97.0 0.023 8E-07 57.6 17.4 196 44-260 3-206 (271)
149 2hqb_A Transcriptional activat 96.8 0.1 3.5E-06 53.6 21.2 194 41-259 4-204 (296)
150 3miz_A Putative transcriptiona 96.8 0.0012 4E-08 68.7 6.3 206 40-266 11-227 (301)
151 3ix1_A N-formyl-4-amino-5-amin 96.8 0.0053 1.8E-07 63.7 11.2 79 482-571 14-96 (302)
152 3jvd_A Transcriptional regulat 96.7 0.05 1.7E-06 57.1 18.3 198 40-268 62-263 (333)
153 3qsl_A Putative exported prote 96.7 0.012 4E-07 62.3 12.9 136 497-740 59-205 (346)
154 3qi7_A Putative transcriptiona 96.5 0.11 3.6E-06 54.2 17.9 215 40-262 10-251 (371)
155 2k1e_A Water soluble analogue 96.4 0.007 2.4E-07 50.9 7.3 77 595-675 20-98 (103)
156 2f5x_A BUGD; periplasmic bindi 96.2 0.11 3.6E-06 53.7 15.9 88 704-793 167-276 (312)
157 3h5t_A Transcriptional regulat 95.9 0.048 1.6E-06 58.1 12.6 206 40-264 66-296 (366)
158 2ih3_C Voltage-gated potassium 95.8 0.021 7.2E-07 49.7 7.5 74 596-673 42-117 (122)
159 2qpq_A Protein BUG27; alpha/be 95.8 0.12 4.1E-06 53.1 14.4 88 704-793 158-267 (301)
160 2dvz_A BUGE, putative exported 95.5 0.2 6.8E-06 51.7 14.8 90 704-793 171-280 (314)
161 3eff_K Voltage-gated potassium 95.4 0.03 1E-06 50.0 7.1 73 596-672 21-95 (139)
162 4ddd_A Immunogenic protein; ss 95.4 0.027 9.2E-07 58.9 7.8 79 482-571 42-136 (327)
163 2a9h_A Voltage-gated potassium 95.2 0.038 1.3E-06 50.2 7.0 73 596-672 65-139 (155)
164 3ixl_A Amdase, arylmalonate de 95.1 0.26 9E-06 48.5 13.3 128 96-254 56-199 (240)
165 4h33_A LMO2059 protein; bilaye 94.8 0.066 2.2E-06 47.6 7.2 56 618-673 42-99 (137)
166 1zbm_A Hypothetical protein AF 94.7 0.15 5.3E-06 51.7 11.0 100 677-782 100-210 (280)
167 3ho7_A OXYR; beta-alpha-barrel 94.0 0.61 2.1E-05 45.1 13.5 69 488-571 25-93 (232)
168 3ouf_A Potassium channel prote 93.5 0.19 6.4E-06 41.5 7.0 57 619-675 32-90 (97)
169 4ab5_A Transcriptional regulat 93.1 1.7 5.7E-05 41.5 14.6 70 487-571 21-90 (222)
170 3ldc_A Calcium-gated potassium 93.0 0.25 8.7E-06 39.2 6.9 52 619-670 28-81 (82)
171 2x7q_A Ca3427, possible thiami 92.1 0.92 3.2E-05 46.9 11.9 98 681-782 119-236 (321)
172 2xed_A Putative maleate isomer 92.1 8.9 0.00031 38.3 18.6 78 166-247 136-220 (273)
173 2q67_A Potassium channel prote 92.0 0.32 1.1E-05 41.4 6.7 56 619-674 49-106 (114)
174 4gx0_A TRKA domain protein; me 91.7 0.63 2.1E-05 52.7 10.8 117 619-735 51-184 (565)
175 3pjs_K KCSA, voltage-gated pot 91.7 0.024 8.4E-07 52.4 -0.9 59 616-674 64-124 (166)
176 3vou_A ION transport 2 domain 91.6 0.53 1.8E-05 42.3 8.0 57 619-675 52-110 (148)
177 1p7b_A Integral membrane chann 91.4 0.4 1.4E-05 49.4 7.8 58 616-673 93-152 (333)
178 2g29_A Nitrate transport prote 91.0 1.2 4E-05 48.1 11.6 102 677-781 152-272 (417)
179 3oxn_A Putative transcriptiona 90.6 7.5 0.00026 37.5 16.4 84 454-571 18-101 (241)
180 3jv9_A OXYR, transcriptional r 90.6 3.5 0.00012 39.0 13.7 69 488-571 18-86 (219)
181 1us5_A Putative GLUR0 ligand b 90.5 1 3.4E-05 46.4 10.2 52 678-729 129-187 (314)
182 1xl4_A Inward rectifier potass 89.4 0.66 2.3E-05 47.2 7.3 57 616-672 79-137 (301)
183 3fzv_A Probable transcriptiona 88.9 6.8 0.00023 39.5 15.0 83 455-571 95-178 (306)
184 1i6a_A OXYR, hydrogen peroxide 88.4 3.1 0.00011 39.6 11.4 70 487-571 18-87 (219)
185 2zzv_A ABC transporter, solute 88.4 3.2 0.00011 43.6 12.2 64 490-559 53-118 (361)
186 1orq_C Potassium channel; volt 88.4 0.86 3E-05 44.3 7.2 55 617-671 163-219 (223)
187 3fxq_A LYSR type regulator of 86.2 7.7 0.00026 39.2 13.5 72 487-571 105-176 (305)
188 3s99_A Basic membrane lipoprot 86.2 4.6 0.00016 42.2 11.7 90 43-142 150-239 (356)
189 2fqx_A Membrane lipoprotein TM 86.2 7.1 0.00024 40.1 13.1 122 44-177 131-264 (318)
190 2q5c_A NTRC family transcripti 85.2 24 0.00081 33.1 15.0 158 42-260 4-161 (196)
191 2hxr_A HTH-type transcriptiona 85.0 27 0.00092 33.2 16.8 70 487-571 43-112 (238)
192 3beh_A MLL3241 protein; transm 84.3 1.2 4.1E-05 46.8 6.2 73 596-672 142-216 (355)
193 2esn_A Probable transcriptiona 84.1 12 0.0004 37.8 13.7 73 487-571 114-186 (310)
194 3ox4_A Alcohol dehydrogenase 2 83.9 1.4 4.9E-05 46.7 6.5 91 164-256 19-111 (383)
195 1lnq_A MTHK channels, potassiu 83.3 0.49 1.7E-05 49.4 2.6 112 619-732 45-166 (336)
196 2y7p_A LYSR-type regulatory pr 82.8 19 0.00064 34.1 13.8 70 487-571 21-90 (218)
197 4esw_A Pyrimidine biosynthesis 82.6 3.2 0.00011 43.2 8.7 60 675-735 106-169 (342)
198 2hzl_A Trap-T family sorbitol/ 82.5 6.7 0.00023 41.2 11.1 52 490-547 52-103 (365)
199 2qks_A KIR3.1-prokaryotic KIR 82.3 2.7 9.3E-05 43.0 7.6 55 619-673 78-134 (321)
200 1atg_A MODA, periplasmic molyb 82.3 8.6 0.0003 36.6 11.2 72 488-571 13-90 (231)
201 3bfj_A 1,3-propanediol oxidore 80.6 5.4 0.00018 42.3 9.6 89 166-255 23-114 (387)
202 2fyi_A HTH-type transcriptiona 80.4 40 0.0014 31.8 16.2 71 487-571 27-97 (228)
203 2pfy_A Putative exported prote 80.4 19 0.00065 36.4 13.4 52 490-547 21-72 (301)
204 1jfl_A Aspartate racemase; alp 79.2 5.7 0.0002 38.5 8.5 81 97-209 65-145 (228)
205 2pfz_A Putative exported prote 78.8 13 0.00043 37.8 11.4 52 490-547 20-71 (301)
206 3r26_A Molybdate-binding perip 78.6 43 0.0015 32.2 14.9 70 490-571 22-97 (237)
207 3onm_A Transcriptional regulat 78.5 40 0.0014 32.0 14.8 68 487-571 40-107 (238)
208 2i49_A Bicarbonate transporter 77.1 12 0.00042 40.2 11.2 105 675-781 153-280 (429)
209 1ixc_A CBNR, LYSR-type regulat 77.1 29 0.00099 34.4 13.7 83 455-571 91-173 (294)
210 2hqb_A Transcriptional activat 77.0 16 0.00055 36.8 11.6 119 43-177 127-247 (296)
211 1o2d_A Alcohol dehydrogenase, 76.6 7.5 0.00026 40.9 9.1 88 165-254 30-119 (371)
212 1al3_A Cys regulon transcripti 76.4 31 0.0011 35.0 13.8 71 487-571 106-176 (324)
213 2pju_A Propionate catabolism o 75.6 11 0.00037 36.3 9.0 161 43-260 13-173 (225)
214 2dgd_A 223AA long hypothetical 75.5 6.9 0.00024 37.7 7.9 74 170-248 102-184 (223)
215 1vlj_A NADH-dependent butanol 75.0 5.5 0.00019 42.6 7.6 89 165-254 32-122 (407)
216 1rrm_A Lactaldehyde reductase; 75.0 2.9 9.8E-05 44.4 5.4 89 166-256 21-111 (386)
217 2r9r_B Paddle chimera voltage 74.7 4.1 0.00014 45.0 6.6 55 616-670 372-428 (514)
218 3s81_A Putative aspartate race 71.6 3.1 0.00011 41.5 4.3 40 97-138 89-128 (268)
219 2zsk_A PH1733, 226AA long hypo 71.0 16 0.00054 35.2 9.2 79 99-209 66-144 (226)
220 4a8p_A Putrescine carbamoyltra 70.7 64 0.0022 33.2 13.8 133 43-212 42-184 (355)
221 1uth_A LYSR-type regulatory pr 70.0 31 0.0011 34.8 11.9 69 488-571 119-187 (315)
222 1nh8_A ATP phosphoribosyltrans 69.9 10 0.00035 37.9 7.4 95 679-781 128-225 (304)
223 3ukm_A Potassium channel subfa 69.6 11 0.00037 37.5 7.6 58 619-676 201-267 (280)
224 1sw5_A Osmoprotection protein 69.4 20 0.00067 35.7 9.9 83 704-791 166-252 (275)
225 3kos_A HTH-type transcriptiona 69.1 48 0.0016 30.8 12.4 93 685-781 109-205 (219)
226 2jfn_A Glutamate racemase; cel 68.2 27 0.00092 35.0 10.5 120 96-245 73-206 (285)
227 1mkz_A Molybdenum cofactor bio 68.1 17 0.00059 33.2 8.3 68 174-244 8-78 (172)
228 3hhf_B Transcriptional regulat 67.6 38 0.0013 31.3 11.2 65 488-570 21-85 (213)
229 4a8t_A Putrescine carbamoyltra 66.7 64 0.0022 33.0 12.9 133 43-212 64-206 (339)
230 3m9w_A D-xylose-binding peripl 66.4 47 0.0016 33.4 12.4 79 177-260 3-84 (313)
231 3uhj_A Probable glycerol dehyd 65.2 6.4 0.00022 41.6 5.3 75 165-245 42-116 (387)
232 3tpf_A Otcase, ornithine carba 64.5 54 0.0018 33.0 11.7 132 44-212 38-177 (307)
233 2l69_A Rossmann 2X3 fold prote 63.5 13 0.00045 28.9 5.3 98 149-259 27-125 (134)
234 2gzm_A Glutamate racemase; enz 62.6 12 0.00041 37.2 6.5 120 96-245 55-186 (267)
235 2h98_A HTH-type transcriptiona 62.5 1.3E+02 0.0044 30.0 17.3 70 487-571 103-172 (313)
236 2ql3_A Probable transcriptiona 61.9 21 0.00071 33.2 8.0 69 488-571 19-87 (209)
237 1xs5_A 29 kDa protein, membran 61.8 85 0.0029 30.3 12.4 36 493-539 21-56 (241)
238 2h9b_A HTH-type transcriptiona 61.7 1.3E+02 0.0045 29.8 15.8 70 487-571 103-172 (312)
239 3gzg_A Molybdate-binding perip 61.4 92 0.0032 30.3 12.8 70 490-571 38-113 (253)
240 3hn0_A Nitrate transport prote 61.1 31 0.001 34.4 9.4 60 679-739 95-160 (283)
241 3gd5_A Otcase, ornithine carba 60.8 84 0.0029 31.8 12.3 133 43-212 49-188 (323)
242 3ce9_A Glycerol dehydrogenase; 60.4 17 0.00059 37.8 7.6 98 166-273 24-123 (354)
243 2oho_A Glutamate racemase; iso 60.3 13 0.00044 37.1 6.3 113 103-245 70-194 (273)
244 3lr1_A Tungstate ABC transport 58.8 8.5 0.00029 37.4 4.5 75 486-572 18-95 (236)
245 1jq5_A Glycerol dehydrogenase; 58.4 17 0.00057 38.2 7.1 97 166-272 22-120 (370)
246 3ist_A Glutamate racemase; str 58.2 17 0.00059 36.0 6.7 128 97-254 58-198 (269)
247 3dbi_A Sugar-binding transcrip 58.0 16 0.00056 37.5 7.0 84 171-259 56-143 (338)
248 1h3d_A ATP-phosphoribosyltrans 57.8 32 0.0011 34.4 8.5 94 679-781 123-219 (299)
249 2dwu_A Glutamate racemase; iso 57.8 46 0.0016 33.1 9.9 128 96-254 59-200 (276)
250 2eq5_A 228AA long hypothetical 57.6 19 0.00066 34.6 6.9 113 99-247 68-186 (228)
251 2jfq_A Glutamate racemase; cel 56.9 53 0.0018 32.8 10.2 120 96-245 74-206 (286)
252 3um7_A Potassium channel subfa 56.7 7.9 0.00027 39.1 3.9 53 619-671 115-169 (309)
253 1y5e_A Molybdenum cofactor bio 53.6 37 0.0013 30.8 7.7 68 174-244 11-81 (169)
254 2vvt_A Glutamate racemase; iso 53.5 42 0.0014 33.6 8.8 128 96-254 76-217 (290)
255 2vd3_A ATP phosphoribosyltrans 53.0 19 0.00064 35.8 5.9 94 679-781 114-209 (289)
256 3muq_A Uncharacterized conserv 52.2 12 0.0004 36.4 4.2 74 486-571 18-94 (237)
257 2czl_A Hypothetical protein TT 51.5 46 0.0016 32.7 8.9 56 677-734 93-150 (272)
258 1zuw_A Glutamate racemase 1; ( 51.1 41 0.0014 33.3 8.2 131 95-254 54-197 (272)
259 4ep1_A Otcase, ornithine carba 50.9 1.1E+02 0.0036 31.3 11.2 130 43-212 71-210 (340)
260 2is8_A Molybdopterin biosynthe 50.5 32 0.0011 31.0 6.7 64 178-244 3-71 (164)
261 2l69_A Rossmann 2X3 fold prote 49.8 90 0.0031 24.3 8.7 67 151-231 54-120 (134)
262 3l49_A ABC sugar (ribose) tran 49.1 28 0.00097 34.5 6.9 80 176-260 5-87 (291)
263 3r7f_A Aspartate carbamoyltran 48.8 72 0.0025 32.0 9.5 135 43-211 37-179 (304)
264 1b73_A Glutamate racemase; iso 48.4 44 0.0015 32.7 7.9 119 96-245 52-180 (254)
265 1twy_A ABC transporter, peripl 47.8 34 0.0012 33.7 7.2 71 489-571 42-113 (290)
266 3pzy_A MOG; ssgcid, seattle st 47.6 26 0.0009 31.6 5.6 64 177-244 8-75 (164)
267 3o74_A Fructose transport syst 47.6 53 0.0018 32.0 8.6 79 177-260 3-83 (272)
268 3rfq_A Pterin-4-alpha-carbinol 47.6 37 0.0013 31.3 6.7 67 175-244 29-98 (185)
269 2pjk_A 178AA long hypothetical 47.3 58 0.002 29.8 8.0 68 174-244 13-90 (178)
270 3szp_A Transcriptional regulat 47.2 45 0.0015 32.8 8.1 73 704-781 213-287 (291)
271 3h5o_A Transcriptional regulat 47.2 34 0.0012 35.0 7.3 83 172-260 58-142 (339)
272 3um7_A Potassium channel subfa 47.0 34 0.0012 34.5 6.8 53 619-671 224-284 (309)
273 3gbv_A Putative LACI-family tr 46.2 34 0.0011 34.2 7.0 85 174-260 6-95 (304)
274 4h31_A Otcase, ornithine carba 45.9 1.6E+02 0.0055 30.3 11.8 133 44-212 72-213 (358)
275 4f2g_A Otcase 1, ornithine car 45.8 57 0.0019 32.9 8.2 132 43-211 46-184 (309)
276 3h75_A Periplasmic sugar-bindi 45.4 26 0.00087 36.2 6.0 81 175-260 2-87 (350)
277 3g1w_A Sugar ABC transporter; 45.2 20 0.0007 36.0 5.1 80 177-260 5-87 (305)
278 2l82_A Designed protein OR32; 44.4 1.2E+02 0.0042 24.3 8.3 96 151-260 5-104 (162)
279 2g2c_A Putative molybdenum cof 43.9 42 0.0014 30.3 6.4 65 177-244 6-78 (167)
280 3jy6_A Transcriptional regulat 43.9 36 0.0012 33.4 6.7 79 175-260 6-86 (276)
281 2de3_A Dibenzothiophene desulf 43.7 34 0.0012 35.7 6.6 77 714-794 210-299 (365)
282 1ta9_A Glycerol dehydrogenase; 43.7 37 0.0013 36.5 7.0 98 165-272 80-179 (450)
283 3iwt_A 178AA long hypothetical 42.9 54 0.0019 29.9 7.1 65 177-244 16-90 (178)
284 1jye_A Lactose operon represso 42.5 33 0.0011 35.4 6.3 65 175-243 60-126 (349)
285 2jwa_A Receptor tyrosine-prote 42.1 30 0.001 23.2 3.6 21 828-848 19-39 (44)
286 3tb6_A Arabinose metabolism tr 41.9 47 0.0016 32.9 7.3 79 177-260 16-100 (298)
287 3e3m_A Transcriptional regulat 41.7 37 0.0013 35.0 6.6 84 171-260 65-150 (355)
288 3grf_A Ornithine carbamoyltran 40.0 2.7E+02 0.0091 28.2 12.2 132 43-211 45-192 (328)
289 3hl0_A Maleylacetate reductase 39.9 44 0.0015 34.6 6.6 75 165-245 23-97 (353)
290 3sya_A G protein-activated inw 39.7 49 0.0017 33.9 6.6 59 617-675 89-151 (340)
291 3l6u_A ABC-type sugar transpor 39.0 46 0.0016 32.9 6.6 81 175-260 7-90 (293)
292 2ef0_A Ornithine carbamoyltran 39.0 1.7E+02 0.0059 29.2 10.5 133 43-212 46-185 (301)
293 2bon_A Lipid kinase; DAG kinas 39.0 60 0.0021 33.2 7.5 76 177-258 30-105 (332)
294 1oj7_A Hypothetical oxidoreduc 39.0 26 0.00089 37.2 4.8 84 166-254 42-127 (408)
295 3out_A Glutamate racemase; str 38.8 30 0.001 34.3 4.8 40 97-138 60-100 (268)
296 1vlv_A Otcase, ornithine carba 38.6 3.2E+02 0.011 27.6 12.5 134 43-212 59-199 (325)
297 3o1l_A Formyltetrahydrofolate 38.6 1.7E+02 0.0058 29.3 10.4 98 108-211 24-138 (302)
298 3uug_A Multiple sugar-binding 38.3 45 0.0015 33.8 6.5 79 177-260 4-85 (330)
299 3ukm_A Potassium channel subfa 37.8 24 0.00083 35.0 4.0 52 619-670 93-146 (280)
300 1pvv_A Otcase, ornithine carba 37.7 3.3E+02 0.011 27.4 14.6 133 43-212 47-186 (315)
301 3jzd_A Iron-containing alcohol 37.7 37 0.0013 35.3 5.6 97 165-272 25-123 (358)
302 3brq_A HTH-type transcriptiona 37.5 61 0.0021 32.0 7.3 83 171-259 14-101 (296)
303 3d02_A Putative LACI-type tran 37.3 42 0.0014 33.5 6.0 80 177-260 5-87 (303)
304 1oth_A Protein (ornithine tran 37.2 3E+02 0.01 27.8 12.0 133 43-212 47-186 (321)
305 3bil_A Probable LACI-family tr 37.1 35 0.0012 35.2 5.4 79 176-260 66-146 (348)
306 1dxh_A Ornithine carbamoyltran 36.9 3.1E+02 0.011 27.8 12.1 131 43-212 46-187 (335)
307 3rf7_A Iron-containing alcohol 36.5 70 0.0024 33.3 7.5 75 165-245 39-119 (375)
308 8abp_A L-arabinose-binding pro 36.1 56 0.0019 32.6 6.7 78 177-260 3-83 (306)
309 2jfz_A Glutamate racemase; cel 35.8 1.4E+02 0.0047 29.1 9.2 38 99-138 55-92 (255)
310 3ojc_A Putative aspartate/glut 35.8 25 0.00086 33.9 3.7 81 97-209 67-148 (231)
311 2fn9_A Ribose ABC transporter, 35.5 46 0.0016 32.9 5.9 79 177-260 3-84 (290)
312 1tjy_A Sugar transport protein 34.8 24 0.0008 35.9 3.6 80 177-260 4-86 (316)
313 1duv_G Octase-1, ornithine tra 34.6 3.8E+02 0.013 27.2 13.2 134 43-212 45-187 (333)
314 3k9c_A Transcriptional regulat 34.4 1.3E+02 0.0045 29.5 9.2 117 44-172 128-252 (289)
315 2o20_A Catabolite control prot 33.8 48 0.0016 33.7 5.8 80 174-259 61-142 (332)
316 3cvg_A Putative metal binding 33.6 33 0.0011 34.4 4.4 73 487-571 33-115 (294)
317 3l4e_A Uncharacterized peptida 33.6 61 0.0021 30.5 5.9 100 164-274 15-123 (206)
318 3kbq_A Protein TA0487; structu 33.1 64 0.0022 29.3 5.7 63 177-243 4-70 (172)
319 3mz1_A Putative transcriptiona 32.9 1.7E+02 0.0057 28.5 9.8 73 704-781 215-289 (300)
320 3sds_A Ornithine carbamoyltran 32.6 2.1E+02 0.0071 29.4 10.0 133 43-212 67-219 (353)
321 3kke_A LACI family transcripti 32.4 50 0.0017 33.0 5.6 85 170-260 9-95 (303)
322 3kn3_A Putative periplasmic pr 32.3 35 0.0012 33.0 4.1 74 486-571 18-94 (242)
323 3jvd_A Transcriptional regulat 32.3 2.3E+02 0.008 28.4 10.9 117 42-172 174-298 (333)
324 3uhf_A Glutamate racemase; str 32.1 1.9E+02 0.0066 28.4 9.5 36 102-138 81-116 (274)
325 1ml4_A Aspartate transcarbamoy 32.0 4E+02 0.014 26.6 12.8 135 43-212 45-188 (308)
326 2fvy_A D-galactose-binding per 32.0 67 0.0023 32.0 6.5 79 177-260 3-85 (309)
327 1uuy_A CNX1, molybdopterin bio 32.0 82 0.0028 28.3 6.4 67 175-244 4-80 (167)
328 1ccw_A Protein (glutamate muta 32.0 1.6E+02 0.0055 25.3 8.1 85 178-271 5-93 (137)
329 3rvy_A ION transport protein; 31.8 57 0.002 32.4 5.8 57 616-672 177-241 (285)
330 4dik_A Flavoprotein; TM0755, e 31.8 3.8E+02 0.013 28.1 12.5 93 176-274 265-364 (410)
331 4ecf_A ABC-type phosphate tran 31.2 1.1E+02 0.0039 29.8 7.8 72 488-571 17-91 (264)
332 3p6l_A Sugar phosphate isomera 31.0 1.2E+02 0.0042 29.3 8.1 93 165-260 25-129 (262)
333 4amu_A Ornithine carbamoyltran 31.0 1.8E+02 0.0061 30.0 9.2 130 43-211 72-211 (365)
334 1y81_A Conserved hypothetical 30.6 36 0.0012 29.7 3.5 89 174-272 12-103 (138)
335 1jx6_A LUXP protein; protein-l 30.3 61 0.0021 33.0 5.9 81 177-259 44-128 (342)
336 3obi_A Formyltetrahydrofolate 30.3 2.4E+02 0.0082 27.9 9.9 93 108-206 8-115 (288)
337 3k4h_A Putative transcriptiona 30.3 42 0.0014 33.2 4.5 81 174-260 6-93 (292)
338 2i6u_A Otcase, ornithine carba 29.9 4.3E+02 0.015 26.4 13.8 134 43-212 40-180 (307)
339 3hs3_A Ribose operon repressor 29.9 63 0.0022 31.7 5.8 69 170-243 4-75 (277)
340 3rot_A ABC sugar transporter, 29.8 32 0.0011 34.4 3.6 81 177-260 4-87 (297)
341 3cg4_A Response regulator rece 29.5 2.5E+02 0.0084 23.4 11.2 56 192-257 18-75 (142)
342 1di6_A MOGA, molybdenum cofact 29.4 1.1E+02 0.0038 28.4 6.8 65 177-244 4-75 (195)
343 3n0v_A Formyltetrahydrofolate 29.3 2.7E+02 0.0091 27.6 10.0 98 108-211 10-123 (286)
344 3umf_A Adenylate kinase; rossm 28.7 23 0.00077 33.8 2.0 36 103-139 26-61 (217)
345 2x7x_A Sensor protein; transfe 28.4 98 0.0033 31.2 7.1 81 175-260 5-88 (325)
346 2nr1_A NR1 M2, M2; receptor, s 28.3 15 0.00051 21.4 0.4 19 617-635 6-24 (27)
347 1jlj_A Gephyrin; globular alph 28.3 1.2E+02 0.004 28.0 6.8 70 172-244 10-87 (189)
348 2yxb_A Coenzyme B12-dependent 28.2 2.2E+02 0.0074 25.3 8.4 87 176-271 18-108 (161)
349 3lft_A Uncharacterized protein 28.1 2.7E+02 0.0092 27.3 10.3 112 41-171 132-247 (295)
350 2iks_A DNA-binding transcripti 28.0 35 0.0012 33.9 3.5 84 171-259 15-100 (293)
351 2fep_A Catabolite control prot 28.0 72 0.0025 31.5 5.9 79 176-260 16-96 (289)
352 2qv7_A Diacylglycerol kinase D 27.9 2.2E+02 0.0076 28.9 9.7 87 166-258 14-103 (337)
353 3nrb_A Formyltetrahydrofolate 27.8 2.9E+02 0.0098 27.4 10.0 94 108-210 9-120 (287)
354 3qvl_A Putative hydantoin race 27.8 2.9E+02 0.0099 26.6 9.9 170 43-254 2-194 (245)
355 1r9l_A Glycine betaine-binding 27.7 1.5E+02 0.0051 29.8 8.1 41 490-541 24-64 (309)
356 3ksm_A ABC-type sugar transpor 27.5 44 0.0015 32.7 4.0 80 178-260 2-85 (276)
357 2h3h_A Sugar ABC transporter, 27.0 55 0.0019 32.9 4.8 79 178-260 3-83 (313)
358 3kjx_A Transcriptional regulat 27.0 1.3E+02 0.0043 30.6 7.7 79 176-260 68-148 (344)
359 2xxp_A CPS2A; replication, pep 27.0 40 0.0014 35.5 3.7 65 672-738 28-98 (398)
360 3cs3_A Sugar-binding transcrip 26.6 2.6E+02 0.0088 27.0 9.7 78 44-132 120-200 (277)
361 3tsm_A IGPS, indole-3-glycerol 26.3 4.1E+02 0.014 26.0 10.6 86 165-260 82-170 (272)
362 2w37_A Ornithine carbamoyltran 26.2 4.6E+02 0.016 26.8 11.2 131 43-212 68-208 (359)
363 3okf_A 3-dehydroquinate syntha 26.0 1.8E+02 0.0063 30.3 8.5 97 170-272 56-159 (390)
364 3lmz_A Putative sugar isomeras 25.9 1.6E+02 0.0056 28.3 7.9 93 165-260 33-127 (257)
365 3hcw_A Maltose operon transcri 25.9 2.9E+02 0.0099 27.0 10.1 113 43-172 132-259 (295)
366 4exl_A PBP 1, phosphate-bindin 25.8 1.3E+02 0.0044 29.4 7.1 71 489-571 18-91 (265)
367 3lou_A Formyltetrahydrofolate 25.7 2.4E+02 0.0081 28.1 8.9 97 108-210 12-127 (292)
368 4f2d_A L-arabinose isomerase; 25.5 1.4E+02 0.0047 32.5 7.7 80 58-140 26-105 (500)
369 3bvp_A INT, TP901-1 integrase; 25.0 98 0.0034 26.7 5.4 51 490-540 27-77 (138)
370 3huu_A Transcription regulator 25.0 37 0.0013 34.0 3.0 86 169-260 15-107 (305)
371 2xwv_A Sialic acid-binding per 24.7 1.2E+02 0.0041 30.6 6.8 47 490-542 22-68 (312)
372 2rjo_A Twin-arginine transloca 24.5 74 0.0025 32.2 5.3 79 177-260 6-89 (332)
373 2pbq_A Molybdenum cofactor bio 24.3 1.3E+02 0.0045 27.4 6.3 64 177-244 6-77 (178)
374 3e61_A Putative transcriptiona 24.1 80 0.0027 30.8 5.3 78 175-260 7-87 (277)
375 1kq3_A Glycerol dehydrogenase; 24.0 37 0.0013 35.6 2.8 95 166-272 32-128 (376)
376 2ioy_A Periplasmic sugar-bindi 24.0 79 0.0027 31.1 5.2 79 177-260 2-83 (283)
377 2fp4_A Succinyl-COA ligase [GD 23.9 5.5E+02 0.019 25.5 12.7 143 91-257 80-234 (305)
378 3spc_A Inward-rectifier K+ cha 23.7 96 0.0033 31.7 5.6 58 617-674 92-153 (343)
379 3kht_A Response regulator; PSI 23.7 3.2E+02 0.011 22.8 9.3 59 192-258 16-76 (144)
380 1ve4_A ATP phosphoribosyltrans 23.4 1.8E+02 0.0062 27.1 7.0 93 680-781 108-202 (206)
381 1vsq_C Mannose-specific phosph 23.3 1.2E+02 0.0041 27.3 5.6 79 164-252 18-96 (165)
382 1nrz_A PTS system, sorbose-spe 23.2 1.3E+02 0.0044 27.0 5.7 79 164-252 15-93 (164)
383 2qsx_A Putative transcriptiona 23.1 4.3E+02 0.015 24.1 12.9 71 706-781 140-212 (218)
384 3c3k_A Alanine racemase; struc 23.1 1.4E+02 0.0047 29.3 6.8 78 175-259 7-86 (285)
385 3egc_A Putative ribose operon 23.1 59 0.002 32.1 4.1 80 174-259 6-87 (291)
386 1z7m_E ATP phosphoribosyltrans 22.9 1E+02 0.0034 29.0 5.1 93 679-780 109-203 (208)
387 4ekn_B Aspartate carbamoyltran 22.8 3.2E+02 0.011 27.3 9.2 132 43-211 41-184 (306)
388 2dri_A D-ribose-binding protei 22.4 94 0.0032 30.2 5.4 79 177-260 2-83 (271)
389 3qk7_A Transcriptional regulat 22.2 53 0.0018 32.6 3.5 79 175-260 5-89 (294)
390 3sr0_A Adenylate kinase; phosp 22.1 38 0.0013 31.9 2.2 31 108-139 2-32 (206)
391 2qh8_A Uncharacterized protein 21.8 3E+02 0.01 27.0 9.2 112 41-171 139-254 (302)
392 3d8u_A PURR transcriptional re 21.8 85 0.0029 30.5 4.9 77 177-259 4-82 (275)
393 3grc_A Sensor protein, kinase; 21.7 3.3E+02 0.011 22.5 8.4 67 177-258 7-75 (140)
394 2hsg_A Glucose-resistance amyl 21.7 93 0.0032 31.5 5.3 79 175-259 59-139 (332)
395 2klu_A T-cell surface glycopro 21.5 1.4E+02 0.0047 21.9 4.3 18 826-843 12-29 (70)
396 3i42_A Response regulator rece 21.5 2.2E+02 0.0074 23.2 7.0 57 192-258 14-72 (127)
397 4es6_A Uroporphyrinogen-III sy 21.4 87 0.003 30.4 4.8 85 163-257 115-206 (254)
398 3gv0_A Transcriptional regulat 21.2 72 0.0024 31.5 4.2 82 173-260 5-90 (288)
399 3hhg_A Transcriptional regulat 21.1 3.8E+02 0.013 25.9 9.9 66 487-570 106-171 (306)
400 4dik_A Flavoprotein; TM0755, e 21.1 7.2E+02 0.025 25.9 18.1 152 43-214 231-388 (410)
401 3lfj_A Manxb, phosphotransfera 20.9 1E+02 0.0035 28.3 4.7 91 149-253 25-115 (187)
402 3s40_A Diacylglycerol kinase; 20.8 3E+02 0.01 27.4 8.8 76 174-257 6-85 (304)
403 1y80_A Predicted cobalamin bin 20.7 3.1E+02 0.011 25.4 8.4 87 177-271 89-179 (210)
404 3iv7_A Alcohol dehydrogenase I 20.6 46 0.0016 34.6 2.6 95 165-272 26-122 (364)
405 4fn4_A Short chain dehydrogena 20.4 3.1E+02 0.011 26.5 8.5 70 178-257 8-80 (254)
406 3gyb_A Transcriptional regulat 20.3 1.1E+02 0.0037 29.9 5.3 116 44-172 120-243 (280)
407 3lte_A Response regulator; str 20.0 2.5E+02 0.0086 23.0 7.1 68 177-259 7-76 (132)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=6e-94 Score=873.45 Aligned_cols=745 Identities=18% Similarity=0.278 Sum_probs=622.8
Q ss_pred ceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCC-CHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 41 DEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQG-DPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
++|+||+++|++|. ....|+++|+||||+++ ++|+++++|+++ ++..+++++|+++++ +|.|||||.+ |.
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~~~~~l~~~-~V~aiiG~~~-S~ 71 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYD-KK 71 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCC-TT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHHHHHHHHhc-CcEEEEcCCC-hh
Confidence 36999999999986 78999999999999987 799999999998 999999999999987 8999999999 99
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCccccc--ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTS--YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~--~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l 197 (860)
++.+++++++.+++|+|+++ .+ ..+. |+||+.|+ . ++++++++++|||++|++|+ |++||. ...+.+
T Consensus 72 ~~~a~~~i~~~~~iP~is~~--~~-~~~~~~~~~r~~p~-~-----~~a~~~l~~~~gw~~v~ii~-d~~~g~-~~~~~~ 140 (823)
T 3kg2_A 72 SVNTITSFCGTLHVSFITPS--FP-TDGTHPFVIQMRPD-L-----KGALLSLIEYYQWDKFAYLY-DSDRGL-STLQAV 140 (823)
T ss_dssp THHHHHHHHHHTTCEEEECS--CC-CSSCCSSEEECSCC-C-----HHHHHHHHHHTTCSEEEEEE-CGGGCT-HHHHHH
T ss_pred HHHHHHHHhhcCCCceeecc--cC-CCCCCceEEEeCCC-H-----HHHHHHHHHHCCCCEEEEEE-eCChhH-HHHHHH
Confidence 99999999999999999984 34 3333 99999988 4 68999999999999999999 677899 999999
Q ss_pred HHHHhhCCceEeEEEeccCCC--CChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhh
Q 044527 198 FDSLHDNDIDIARRTSISLAS--STHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMN 275 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~ 275 (860)
.+.+++.|+||+..+.++ .. .+.+|+..++++|+++++|+|++++..+++..++++|+++||..++++|+.++....
T Consensus 141 ~~~~~~~g~~v~~~~~~~-~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 219 (823)
T 3kg2_A 141 LDSAAEKKWQVTAINVGN-INNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (823)
T ss_dssp HHHHHHTTCEEEEEECSS-CCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSS
T ss_pred HHHhhccCCceEEEEeec-CCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEeccccc
Confidence 999999999999988776 22 227889999999999999999999999999999999999999888999999986443
Q ss_pred hcccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCC--
Q 044527 276 FLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQ-- 353 (860)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~-- 353 (860)
..+.. ...+. ..+++++.++.+++|.+++|.++|++.+++++|......++.+++++||||+++|+|+++++.++
T Consensus 220 ~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~ 296 (823)
T 3kg2_A 220 DGDLL--KIQFG-GAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (823)
T ss_dssp SSCCS--SSSSS-BCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccchH--HhhcC-CCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 32211 22233 56789999999999999999999999888877665555678899999999999999999987531
Q ss_pred ------------------CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCceeec
Q 044527 354 ------------------VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITKEM 414 (860)
Q Consensus 354 ------------------~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~~~ 414 (860)
.+++++.++|++++|+|++|+++| ++|++..+ .|+|++++++++++||.|++..++....
T Consensus 297 ~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~I~~~~~~g~~~vg~w~~~~g~~~~~ 375 (823)
T 3kg2_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINY-TINIMELKTNGPRKIGYWSEVDKMVLTE 375 (823)
T ss_dssp CCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSC-EEEEEEECSSCEEEEEEEETTTEEEECC
T ss_pred cccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCccccc-EEEEEEEcCCCCeeEEEEcCCCCceecc
Confidence 127899999999999999999999 99999987 9999999999999999999987654322
Q ss_pred cccccccccccccCCCCCCCcceeecCCCCCCCCCcccCCCeEEEEecCCCcccceEeeeCC--CCCCCCccEeeeeHHH
Q 044527 415 NSSVFINKMDTISSTSPNDELEVIIWPGGSAAIPAGVGKINKLRIGVPVNGLKEFVNVVWDP--QSINSTLTVEGFCIDV 492 (860)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~g~~l~v~~~~~~~~pf~~~~~~~--~~~~~~~~~~G~~~~l 492 (860)
. ..... .|++++|++. ..+||++.+.+. ..+ ++++.|+|+|+
T Consensus 376 ~---------------------------~~~~~-----~~~~l~v~~~--~~~P~~~~~~~~~~~~~--~~~~~G~~~dl 419 (823)
T 3kg2_A 376 D---------------------------DTSGL-----EQKTVVVTTI--LESPYVMMKANHAALAG--NERYEGYCVDL 419 (823)
T ss_dssp C---------------------------CCSSC-----CCCCEEEEEC--CCTTTSEECTTGGGCCG--GGGEESHHHHH
T ss_pred C---------------------------ccccc-----CCCEEEEEEe--cCCCcEEEecCccccCC--CCceEEEHHHH
Confidence 1 00000 1789999998 569999874321 233 77999999999
Q ss_pred HHHHHHhCCCceeEEEEeecCCCCC-ccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEEecCC
Q 044527 493 FKAAIDTLTFEVPYEFIPFVDAGGR-VAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQ 571 (860)
Q Consensus 493 ~~~la~~l~f~~~~~~~~~~~~~~~-~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~ 571 (860)
++++++++||+++++.++++++|.. ..||+|++++++|.+|++|++++++++|++|.+.++||.||+..++++++|++.
T Consensus 420 ~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~ 499 (823)
T 3kg2_A 420 AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQ 499 (823)
T ss_dssp HHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCC
T ss_pred HHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCC
Confidence 9999999999998888888777764 578899999999999999999999999999999999999999999999999887
Q ss_pred --CCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCCcc--------------cccchhHHHHHHHHhhccc
Q 044527 572 --NNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQGSR--------------AHQFGMIFWYSFSTLVFSQ 635 (860)
Q Consensus 572 --~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~ 635 (860)
.++++.|++||++.+|++++++++++++++|++.|..+.+|..++ ..++.+++|++++++++|+
T Consensus 500 ~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 579 (823)
T 3kg2_A 500 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG 579 (823)
T ss_dssp CCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC--
T ss_pred cccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC
Confidence 578899999999999999999999999999999998765544221 2357799999999999888
Q ss_pred -cccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHh-------hhcC---CcEEEecCCcHHHhhhcCCCCC--
Q 044527 636 -REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIK-------LASM---DNIGSQLGSVVPGALSNLNFKD-- 702 (860)
Q Consensus 636 -~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~-------~~~~---~~i~~~~~~~~~~~~~~~~~~~-- 702 (860)
...|++.++|+++++||+|++|++++|+|+|+|+||.++++ ++.+ ..+++..++...+++++...+.
T Consensus 580 ~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 659 (823)
T 3kg2_A 580 ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFD 659 (823)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHH
T ss_pred CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHH
Confidence 45689999999999999999999999999999999998776 3332 3467677777777776533221
Q ss_pred ---------cCccccCCHHHHHHHHh-cCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCcchHH
Q 044527 703 ---------SRLKKYNSAEEYANALS-MGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSPLVHD 771 (860)
Q Consensus 703 ---------~~~~~~~~~~~~~~~l~-~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~spl~~~ 771 (860)
.....+++.+++++++. +++.+|++.+...++|+.++. | +++.+++.+ ...++++++||||||++.
T Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c-~l~~v~~~~--~~~~~~~~~~k~spl~~~ 736 (823)
T 3kg2_A 660 KMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPC-DTMKVGGNL--DSKGYGIATPKGSSLGTP 736 (823)
T ss_dssp HHHHHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTC-CEEEESCCS--SCEEECCEEETTCSSHHH
T ss_pred HHHHHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCC-ceEEccccc--cccceeEeecCCChHHHH
Confidence 01124568999999996 444589999999999988877 8 899999999 899999999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHcCCCCCCCcccCCC--CCCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 044527 772 ISRAIARLREEGTLAKIENVWFNTQQSSNFMHEDS--TSSNPSSLSLANFGGLFLITGISSTLALVIFLVTSIYKRTFWR 849 (860)
Q Consensus 772 in~~i~~l~e~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~l~~l~g~f~~l~~g~~ls~~vf~~E~~~~~~~~~ 849 (860)
||++|++|+|+|++++|.++|+..+..| .... .+....+|+++++.|+|++|++|+++|+++|++|+++++++++
T Consensus 737 ~~~~il~l~e~G~~~~~~~~w~~~~~~c---~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~ 813 (823)
T 3kg2_A 737 VNLAVLKLSEQGLLDKLKNKWWYDKGEC---GAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEA 813 (823)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTTSCSC---SSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCCcHHHHHHhhCcCCCCC---CCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 9999999999999999999999887889 5433 2345679999999999999999999999999999999877655
Q ss_pred ccc
Q 044527 850 TGE 852 (860)
Q Consensus 850 ~~~ 852 (860)
++.
T Consensus 814 ~~~ 816 (823)
T 3kg2_A 814 KRM 816 (823)
T ss_dssp ---
T ss_pred hhc
Confidence 543
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=2e-47 Score=420.60 Aligned_cols=351 Identities=15% Similarity=0.246 Sum_probs=307.7
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCC-cc-cEEEEEEecCCC-CHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTH-CK-TRLILHSRDSQG-DPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~-l~-~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
+++|+||+++|++|. ..+.|+++|+||||+++++ ++ ++|+++++|++| +|..|++.+++|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~-~V~aiiG~~~ 78 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSR-GVYAIFGFYD 78 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTT-TCSCEEECCC
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEeCCC
Confidence 678999999999987 7899999999999999998 56 999999999987 999999999999988 9999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc--ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS--YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTI 194 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~--~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~ 194 (860)
|..+.+++++++.++||+|+++. | .++. |.||+.|+ . ++++++++++++|+||++|+ |++||. ...
T Consensus 79 -S~~~~a~~~i~~~~~iP~Is~s~--~-~~~~~~~~~~~~p~-~-----~~a~~~~~~~~gw~~vaii~-d~~~g~-~~~ 146 (389)
T 3o21_A 79 -QMSMNTLTSFCGALHTSFVTPSF--P-TDADVQFVIQMRPA-L-----KGAILSLLSYYKWEKFVYLY-DTERGF-SVL 146 (389)
T ss_dssp -TTTHHHHHHHHHHHTCCEEECSC--C-CSSCCSSEEECSCC-S-----HHHHHHHHHHHTCCEEEEEE-CSTTCS-HHH
T ss_pred -hhHHHHHHHHhccCCCceeecCC--C-CccCCceEEEEccC-H-----HHHHHHHHHhCCCCEEEEEE-cCcHHH-HHH
Confidence 99999999999999999998864 4 4444 88888876 4 78999999999999999999 778999 999
Q ss_pred HHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhh
Q 044527 195 PYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATM 274 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 274 (860)
+.+.+.+++.|+||+..+.++ . .+.+|+..++++|+++++|+||+.+..+++..++++++++||..+.|+||+++.+.
T Consensus 147 ~~~~~~~~~~g~~v~~~~~~~-~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~ 224 (389)
T 3o21_A 147 QAIMEAAVQNNWQVTARSVGN-I-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGF 224 (389)
T ss_dssp HHHHHHHHHTTCEEEEEECTT-C-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTG
T ss_pred HHHHHHhhcCCCeEEEEEecC-C-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCc
Confidence 999999999999999887654 1 24569999999999999999999999999999999999999988899999988655
Q ss_pred hhcccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcC--
Q 044527 275 NFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTG-- 352 (860)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~-- 352 (860)
...+.. +.... ..+++++..+.+++|.+++|+++|++++++++|+.....+..+++++||||+++++|+++++.+
T Consensus 225 ~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~ 301 (389)
T 3o21_A 225 TDILLE--RVMHG-GANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRV 301 (389)
T ss_dssp GGCCCH--HHHHT-TCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHH--HHhcC-CcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCc
Confidence 443221 23334 6789999999999999999999999988776554333356789999999999999999998731
Q ss_pred -------------C-----CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCcee
Q 044527 353 -------------Q-----VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITK 412 (860)
Q Consensus 353 -------------~-----~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~ 412 (860)
+ .+|.+|.++|++++|+|++|+++| ++|++..+ .|+|+++.++++++||+|++..|+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~g~~~ 379 (389)
T 3o21_A 302 DVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNY-TIDVYEMKVSGSRKAGYWNEYERFVP 379 (389)
T ss_dssp CCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSC-CEEEEEEETTEEEEEEEEETTTEEEC
T ss_pred ccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccc-eEEEEEEcCCCceeeeEEcCCCCccc
Confidence 1 126899999999999999999999 99999987 99999999999999999999888663
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=2.3e-46 Score=419.91 Aligned_cols=366 Identities=17% Similarity=0.243 Sum_probs=314.5
Q ss_pred CceEEEEEEEecCCc-----chhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCHHHHHHHHHHhhcc-CCeEEEE
Q 044527 40 SDEVHVGIILDMRSW-----TGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDPFHALTTASNLMQN-VDLQAII 112 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-----~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~avi 112 (860)
.++|+||+++|++|. .|+....|+++|+++||++ ++++ ++|+++++|++|+|..|++.+++|+.+ ++|.+||
T Consensus 12 ~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~avi 90 (433)
T 4f11_A 12 SPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVF 90 (433)
T ss_dssp CCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEE
T ss_pred CCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 678999999999994 3788999999999999999 6666 999999999999999999999999986 4899999
Q ss_pred ecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC
Q 044527 113 CIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT 187 (860)
Q Consensus 113 Gp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~ 187 (860)
||.+ |..+.+++++++.+++|+|+++++++ .+++ ++||+.|++. .+++++++++++++|++|++|+++++
T Consensus 91 G~~~-S~~~~a~~~~~~~~~ip~is~~~~~~-~l~~~~~~~~~fr~~~~~~---~~~~~~~~~~~~~g~~~v~ii~~~~~ 165 (433)
T 4f11_A 91 GGVC-PSVTSIIAESLQGWNLVQLSFAATTP-VLADKKKYPYFFRTVPSDN---AVNPAILKLLKHYQWKRVGTLTQDVQ 165 (433)
T ss_dssp ECCS-HHHHHHHHHTHHHHTCEEEESSCCCG-GGGCTTTCTTEEESSCCGG---GHHHHHHHHHHHTTCCEEEEEEESSH
T ss_pred CCCc-chHHHHHHHHHHhcCceEEEcccCCc-cccccccCCceEEecCchH---HHHHHHHHHHHHcCCcEEEEEEecch
Confidence 9999 99999999999999999999999999 8876 9999999999 99999999999999999999999999
Q ss_pred CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEE
Q 044527 188 WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVW 267 (860)
Q Consensus 188 ~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~ 267 (860)
||. ...+.+++.+++.|+||+..+.++ . |+..++.+|+++++|+|++++...++..++++++++|+...+++|
T Consensus 166 ~g~-~~~~~~~~~~~~~g~~v~~~~~~~---~---d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~ 238 (433)
T 4f11_A 166 RFS-EVRNDLTGVLYGEDIEISDTESFS---N---DPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQW 238 (433)
T ss_dssp HHH-HHHHHHHHHSSSSSCEEEEEEEES---S---CCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEE
T ss_pred hhH-HHHHHHHHHHHHcCceEEEEeccC---c---CHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEE
Confidence 999 999999999999999999988766 2 577899999999999999999999999999999999998778999
Q ss_pred EecChhhhhcc-----------cCcchhhcccCceeEEEEeccCCc--------hhHHHHHHHHHHH-hhccCCCCCCCC
Q 044527 268 IATAATMNFLH-----------SMDSLVVESSMQGVVGFRRYVPTS--------KELHNFTLRWRRE-MYLNNPNAEVSE 327 (860)
Q Consensus 268 i~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~ 327 (860)
|.++.....+. .......++ ++|++++.++.+.. +..++|.++|+++ ++. .
T Consensus 239 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~--------~ 309 (433)
T 4f11_A 239 IIPGWYEPSWWEQVHTEANSSRCLRKNLLAA-MEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGV--------G 309 (433)
T ss_dssp EEESCSCTTTTTCC------CCSCHHHHHHH-HTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTS--------C
T ss_pred EEcCcchHhHhcccccCCCCCCCCHHHHHHH-HhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCC--------C
Confidence 99988433332 112223345 78899988876532 3478899999887 332 3
Q ss_pred CChhHHHHhhHHHHHHHHHHhhhcCC-----------------CChHHHHHHHHhcccccceeeEEeeCCeecCCccEEE
Q 044527 328 LDAYGILAYDTVWAVAKASEKLKTGQ-----------------VSDEIFYKQIVNNRFRGLSGDFQFVNGKLTSSREFEI 390 (860)
Q Consensus 328 ~~~~~~~~YDav~~la~Al~~~~~~~-----------------~~~~~l~~~l~~~~~~g~tG~v~F~~g~~~~~~~~~i 390 (860)
+..+++++||||+++++||++++.+. .++++|.++|++++|+|++|+++|++|++.. .|+|
T Consensus 310 ~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~~--~~~I 387 (433)
T 4f11_A 310 PSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERMG--TIKF 387 (433)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEEC--EEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCceee--eEEE
Confidence 56788999999999999999986420 0168999999999999999999999999986 8999
Q ss_pred EEeecCceEEeeeecCCCCceeeccccccccccccccCCCCCCCcceeecCCCCCCCCC
Q 044527 391 VNVIGKTIKRVGFWNPTTGITKEMNSSVFINKMDTISSTSPNDELEVIIWPGGSAAIPA 449 (860)
Q Consensus 391 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~ 449 (860)
++++++++++||.|++.... ... +.+.|.||++.++.++
T Consensus 388 ~~~~~g~~~~VG~~~~~~~~-l~~-------------------~~~~i~W~~~~~P~D~ 426 (433)
T 4f11_A 388 TQFQDSREVKVGEYNAVADT-LEI-------------------INDTIRFQGSEPPKDD 426 (433)
T ss_dssp EEEETTEEEEEEEEETTTTE-EEE-------------------CTTTCCCSSSSCCCSS
T ss_pred EEEECCceEEEEEEECCCCe-EEE-------------------eCCceECCCCCCCCCc
Confidence 99999999999999875331 111 2246899998865543
No 4
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=8.5e-46 Score=410.00 Aligned_cols=358 Identities=19% Similarity=0.288 Sum_probs=309.5
Q ss_pred CceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCC-CCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQ-GDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~-~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
+++|+||+++|++|. .|...+.|+++|+||||++++++| ++|++++.|+. .|+..+.+.+|+++++ +|.+||||.+
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~-~V~aiiG~~~ 80 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSL-GVAAIFGPSH 80 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHH-CCSCEECCSS
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhc-CcEEEECCCC
Confidence 678999999999884 488899999999999999999999 89999999876 6899999999999976 9999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCC
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNT 193 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~ 193 (860)
|..+.+++++++.+++|+|+++++++ .+++ |+||+.|++. .+++++++++++++|+||++|+ |++||. ..
T Consensus 81 -S~~~~a~~~~~~~~~ip~is~~~~~~-~l~~~~~~~~r~~~~~~---~~~~~~~~~~~~~g~~~v~ii~-d~~~g~-~~ 153 (395)
T 3h6g_A 81 -SSSANAVQSICNALGVPHIQTRWKHQ-VSDNKDSFYVSLYPDFS---SLSRAILDLVQFFKWKTVTVVY-DDSTGL-IR 153 (395)
T ss_dssp -HHHHHHHHHHHHHTTCCEEECSCCCC-CTTCCCCSEEEEEECHH---HHHHHHHHHHHHTTCSEEEEEE-SSTHHH-HH
T ss_pred -hhHHHHHHHHHhcCCCCeEeeccCcc-cccccCceEEEecCCHH---HHHHHHHHHHHHCCCeEEEEEE-EChhHH-HH
Confidence 99999999999999999999999999 8886 9999999999 9999999999999999999998 567999 89
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChh
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAAT 273 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 273 (860)
.+.+++.+++.|++|+... ++ .+.+|+..++.+|+++++|+|++++..+++..++++++++||..+.++|++++..
T Consensus 154 ~~~~~~~~~~~g~~v~~~~-~~---~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~ 229 (395)
T 3h6g_A 154 LQELIKAPSRYNLRLKIRQ-LP---ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLD 229 (395)
T ss_dssp THHHHTGGGTSSCEEEEEE-CC---SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTT
T ss_pred HHHHHHhhhcCCceEEEEE-eC---CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCc
Confidence 9999999999999999875 66 5688999999999999999999999999999999999999999899999998754
Q ss_pred hhhcccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCC----CCCCChhHHHHhhHHHHHHHHHHhh
Q 044527 274 MNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAE----VSELDAYGILAYDTVWAVAKASEKL 349 (860)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~YDav~~la~Al~~~ 349 (860)
....+.... ... ..++.++....+++|..++|.++|++++....|... ...++.+++++|||++++++|++++
T Consensus 230 ~~~~~~~~~--~~~-g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a 306 (395)
T 3h6g_A 230 LFALDVEPY--RYS-GVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQF 306 (395)
T ss_dssp GGGBCCTTT--TTS-CCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred eeEechHHh--ccC-ccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhh
Confidence 432221111 111 334678888888899999999999986654433221 1235779999999999999999999
Q ss_pred hcCC------------CChHHHHHHHHhcccccceeeEEe-e-CCeecCCccEEEEEeecCceEEeeeecCCCCceee
Q 044527 350 KTGQ------------VSDEIFYKQIVNNRFRGLSGDFQF-V-NGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITKE 413 (860)
Q Consensus 350 ~~~~------------~~~~~l~~~l~~~~~~g~tG~v~F-~-~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~~ 413 (860)
+... .+++++.++|++++|+|++|+++| + +|++..+ .|+|++++++++++||.|++..++...
T Consensus 307 ~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~-~~~i~~~~~~~~~~vG~w~~~~g~~~~ 383 (395)
T 3h6g_A 307 PQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDF-DLDVISLKEEGLEKIGTWDPASGLNMT 383 (395)
T ss_dssp TTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCC-CEEEEEEETTEEEEEEEEETTTEECCC
T ss_pred hcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCC-eEEEEEeccCCceEEEEEcCCCCcccc
Confidence 7521 237899999999999999999999 8 9999998 999999999999999999998876543
No 5
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=8.7e-45 Score=401.65 Aligned_cols=353 Identities=14% Similarity=0.220 Sum_probs=305.5
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcc--cEEEEEEecC-CCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCK--TRLILHSRDS-QGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~--~~l~~~~~D~-~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
|++|+||++||.++. +...|+++|+|+||+++++++ .+|.+...|+ ++++..+.+.+|+++++ +|.|||||.+
T Consensus 3 P~~I~IG~lf~~~~~---~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-~V~aiiG~~~ 78 (389)
T 4gpa_A 3 PSSVQIGGLFIRNTD---QEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSR-GVFAIFGLYD 78 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHT-TCSEEEECCC
T ss_pred CCeEEEEEEEcCCCh---HHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhc-CCEEEEeCCc
Confidence 678999999998864 678999999999999999996 6666666654 47888999999999987 9999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPY 196 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 196 (860)
|.++.+++.+++.++||+++++++.+ ..++|.+++.|.. ++++++++++|+|++|++||+++.++. ..+.
T Consensus 79 -S~~~~~v~~i~~~~~ip~is~~~~~~-~~~~~~~~~~~~~------~~a~~~l~~~~~w~~vaii~~~d~~~~--~~~~ 148 (389)
T 4gpa_A 79 -KRSVHTLTSFCSALHISLITPSFPTE-GESQFVLQLRPSL------RGALLSLLDHYEWNCFVFLYDTDRGYS--ILQA 148 (389)
T ss_dssp -TTTHHHHHHHHHHTTCEEEECSCCCS-SCCSSEEECSCCC------HHHHHHHHHHTTCCEEEEEECSTTCSH--HHHH
T ss_pred -cHHHHHHHHHHHHhCCCceecccccc-ccccCCccccCCH------HHHHHHHHHHcCCcEEEEEEecchhhH--HHHH
Confidence 99999999999999999999988877 7777777777654 368999999999999999998887665 5778
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhh
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNF 276 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~ 276 (860)
+.+.+.+.|++|+....++ ....++...+.+++++++++|++.+..+++..++++|.++|+..++++|++++.+...
T Consensus 149 ~~~~~~~~g~~v~~~~~~~---~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~ 225 (389)
T 4gpa_A 149 IMEKAGQNGWHVSAICVEN---FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKD 225 (389)
T ss_dssp HHHHHHTTTCEEEEEECTT---CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGG
T ss_pred HHHHHHhcCceEEEEeecC---CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccc
Confidence 8899999999999887655 7889999999999999999999999999999999999999999999999999887655
Q ss_pred cccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCCC--
Q 044527 277 LHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQV-- 354 (860)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~-- 354 (860)
... .+..+. ..++.++....++++.+++|.++|++.+.+..+.. ...+..+++++||||+++|+||+++..+..
T Consensus 226 ~~~--~~~~~~-~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~ 301 (389)
T 4gpa_A 226 ISL--ERFIHG-GANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGS-ETPPKYTSALTYDGVLVMAETFRSLRRQKIDI 301 (389)
T ss_dssp SCC--HHHHHH-BCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTT-TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhh--hhhhhc-ccceEEEEeecCCChHHHHHHHHHHHHhhhhcccC-CCChhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 432 233344 67899999999999999999999988776654332 335788999999999999999999875432
Q ss_pred ------------------ChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCceeec
Q 044527 355 ------------------SDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITKEM 414 (860)
Q Consensus 355 ------------------~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~~~ 414 (860)
.|.+|.++|++++|+|++|+|.| ++|+|.++ .|+|++++++++++||.|++..|+.+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~-~~~I~~l~~~~~~~VG~W~~~~gl~~~~ 379 (389)
T 4gpa_A 302 SRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNY-TMDVFELKSTGPRKVGYWNDMDKLVLIQ 379 (389)
T ss_dssp CCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSC-EEEEEEEETTEEEEEEEEETTTEEEECC
T ss_pred cccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCC-EEEEEEEECCEEEEEEEEECCCCeEECC
Confidence 26789999999999999999999 99999988 9999999999999999999988876543
No 6
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=2.6e-45 Score=402.44 Aligned_cols=348 Identities=15% Similarity=0.241 Sum_probs=282.9
Q ss_pred eEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC-CCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 42 EVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ-GDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 42 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~-~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
+|+||++++++|. ..+.|+++|++|||++ +++|++++.|++ +||..+++++|+|+++ +|.+||||.+ |..
T Consensus 2 ~i~IG~i~~~sg~---~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~~~~~li~~-~V~aiiG~~~-S~~ 72 (376)
T 3hsy_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSR-GVYAIFGFYD-KKS 72 (376)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCC-TTT
T ss_pred ceeEEEEeCCCCH---HHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHHHHHHHHhc-CcEEEECCCc-hhH
Confidence 6999999999985 6789999999999998 479999999965 5999999999999987 8999999999 999
Q ss_pred HHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHH
Q 044527 121 AQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDS 200 (860)
Q Consensus 121 ~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~ 200 (860)
+.+++++++.+++|+|+++++.. .-..|+||+.|+ . ++++++++++++|++|++|+ |++||. ...+.+.+.
T Consensus 73 ~~av~~~~~~~~ip~is~~~~~~-~~~~~~~~~~p~-~-----~~a~~~~~~~~gw~~vaii~-d~~~g~-~~~~~~~~~ 143 (376)
T 3hsy_A 73 VNTITSFCGTLHVSFITPSFPTD-GTHPFVIQMRPD-L-----KGALLSLIEYYQWDKFAYLY-DSDRGL-STLQAVLDS 143 (376)
T ss_dssp HHHHHHHHHHHTCEEEECSCCCC-SCCTTEEECSCC-C-----HHHHHHHHHHTTCCEEEEEE-CSTTCS-HHHHHHHHH
T ss_pred HHHHHHHhccCcCceeecCCCCc-ccCCceEEeCcc-H-----HHHHHHHHHhcCCCEEEEEE-eCchhH-HHHHHHHHH
Confidence 99999999999999999986332 212299999876 5 78999999999999999999 788999 999999999
Q ss_pred HhhCCceEeEEEeccCCC--CChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhhcc
Q 044527 201 LHDNDIDIARRTSISLAS--STHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLH 278 (860)
Q Consensus 201 ~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~ 278 (860)
+++.|++|+....++ .. .+.+|+..++.+|+++++|+|++.+..+++..++++++++||..+.++||.++......+
T Consensus 144 ~~~~g~~v~~~~~~~-~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~ 222 (376)
T 3hsy_A 144 AAEKKWQVTAINVGN-INNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGD 222 (376)
T ss_dssp HHHHTCEEEEEECTT-CC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTT
T ss_pred hhhcCCeEEEEEecc-ccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccc
Confidence 999999999877655 22 246899999999999999999999999999999999999999888899999875433222
Q ss_pred cCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCC-----
Q 044527 279 SMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQ----- 353 (860)
Q Consensus 279 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~----- 353 (860)
.. +.... ..+++++....+++|.+++|+++|++++++++++.....|..+++++||||+++++|+++++.++
T Consensus 223 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~ 299 (376)
T 3hsy_A 223 LL--KIQFG-GANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (376)
T ss_dssp GG--GSCCT-TCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred hH--HhhcC-CcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 11 12222 44688888888899999999999999888765543333578899999999999999999987421
Q ss_pred ---------------CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCcee
Q 044527 354 ---------------VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITK 412 (860)
Q Consensus 354 ---------------~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~ 412 (860)
.+|.+|.++|++++|+|++|+++| ++|++..+ .|+|+++.++++++||+|++..++..
T Consensus 300 ~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 300 RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINY-TINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSC-EEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccc-eEEEEEecCCCceEEEEEcCCCCcee
Confidence 125799999999999999999999 99999988 99999999999999999999887653
No 7
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=4.4e-45 Score=403.78 Aligned_cols=358 Identities=15% Similarity=0.227 Sum_probs=297.3
Q ss_pred ceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCH-HHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 41 DEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDP-FHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~-~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.+|+||+++|+++..|+..+.|+++|+||||++++++| ++|+++++|+++++ ..+.+.+|+++++ +|.+||||.+ |
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~-~V~aiiG~~~-S 80 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPK-GVVSVLGPSS-S 80 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGG-CCSCEECCSS-C
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhc-CcEEEECCCC-c
Confidence 47999999999988899999999999999999999998 99999999999976 4667889999864 8999999999 7
Q ss_pred h-HHHHHHHhhcCCCCcEEecccCCCccccc-ce--EeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCH
Q 044527 119 T-GAQILADLGSRAKIPIISLFTTLPNSLTS-YS--IQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTI 194 (860)
Q Consensus 119 ~-~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~--~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~ 194 (860)
+ ++.+++++++.+++|+|++++++...... ++ ||+.|++. .+++++++++++++|++|++|+++++||. .+.
T Consensus 81 ~~~~~a~~~i~~~~~ip~is~~a~~~~~~~~~~~~~fr~~p~~~---~~~~~~~~~~~~~g~~~vaii~~~~~~g~-~l~ 156 (393)
T 3om0_A 81 PASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYPSNE---DVSLAVSRILKSFNYPSASLICAKAECLL-RLE 156 (393)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCCC----CCSCCEESSCCHH---HHHHHHHHHHHHTTSCCEEEEESSTTHHH-HTH
T ss_pred hhHHHHHHHHHhccCCCeEeccCCcCccccccccceEEecCCHH---HHHHHHHHHHHhCCCcEEEEEEeCchHHH-HHH
Confidence 4 55799999999999999998774203222 66 99999999 99999999999999999999999999998 766
Q ss_pred HHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhh
Q 044527 195 PYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATM 274 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~ 274 (860)
+.+ +.+.+.|++|+... ++ +.+|+..++.+|+++++|+|++.+..+++..++++++++||..+.++|+++++..
T Consensus 157 ~~~-~~~~~~g~~v~~~~-~~----~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~ 230 (393)
T 3om0_A 157 ELV-RGFLISKETLSVRM-LD----DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDF 230 (393)
T ss_dssp HHH-HHHHHSSSCEEEEE-CC-----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTG
T ss_pred HHH-HhhhccCCeEEEEe-cC----CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccc
Confidence 555 55778899997654 23 4568899999999999999999999999999999999999988889999988765
Q ss_pred hhcccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCC-
Q 044527 275 NFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQ- 353 (860)
Q Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~- 353 (860)
...+... .... ..+++++....+++|.+++|.++|+++|+..........|..+++++|||++++++|+++++...
T Consensus 231 ~~~~l~~--~~~~-~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~ 307 (393)
T 3om0_A 231 PILHLDG--IVED-SSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE 307 (393)
T ss_dssp GGCCCTT--TCCS-SCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred cccchhh--hhcc-CCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc
Confidence 4432211 2233 67889999888889999999999999887432111112467899999999999999999987421
Q ss_pred --------------CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCceeec
Q 044527 354 --------------VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITKEM 414 (860)
Q Consensus 354 --------------~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~~~ 414 (860)
.++.++.++|++++|+|++|+++| ++|++..+ .|+|++++++++++||+|++..++.+..
T Consensus 308 ~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~w~~~~gl~~~~ 382 (393)
T 3om0_A 308 IGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNY-TLRILEKSRQGHREIGVWYSNRTLAMNA 382 (393)
T ss_dssp CCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSC-EEEEEEEETTEEEEEEEEECC-------
T ss_pred CcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccce-eEEEEEeccCCceEeeeEcCCCCccccc
Confidence 237899999999999999999999 99999887 9999999999999999999988876543
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-44 Score=398.27 Aligned_cols=345 Identities=17% Similarity=0.267 Sum_probs=300.7
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCC-CHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQG-DPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
+++|+||+++|++|. ..+.|+++|+++||+++ +|++++.|+++ +|..+++++++|+++ +|.+||||.+ |
T Consensus 8 ~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~-~V~aiiG~~~-S 77 (384)
T 3saj_A 8 PNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSK-GVYAIFGFYE-R 77 (384)
T ss_dssp CSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHT-TCSCEEECCC-H
T ss_pred CcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhc-CeEEEECCCC-H
Confidence 678999999999997 78999999999999986 99999999886 999999999999987 8999999999 9
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCccccc--ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTS--YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~--~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 196 (860)
..+.+++++++.+++|+|+++ +| .++. |+||+.|+ . ++++++++++++|++|++|+ |++||. ...+.
T Consensus 78 ~~~~a~~~~~~~~~iP~is~~--~~-~~~~~~~~~~~~p~-~-----~~a~~~~~~~~g~~~v~ii~-d~~~g~-~~~~~ 146 (384)
T 3saj_A 78 RTVNMLTSFCGALHVCFITPS--FP-VDTSNQFVLQLRPE-L-----QEALISIIDHYKWQTFVYIY-DADRGL-SVLQR 146 (384)
T ss_dssp HHHHHHHHHHHHHTCCEEECS--CC-CSSCCTTEEECSCC-C-----HHHHHHHHHHTTCCEEEEEE-CSTTCS-HHHHH
T ss_pred HHHHHHHHHhccCCCCeEecc--cc-CcCccCceEEeccc-H-----HHHHHHHHHHCCCcEEEEEE-eCchhH-HHHHH
Confidence 999999999999999999995 45 5544 88999886 4 78999999999999999999 668999 99999
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhh
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNF 276 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~ 276 (860)
+++.+++.|+||+..+.++ .+.+|+..++.+|+++++|+|++++..+++..++++++++||..++++|++++.+...
T Consensus 147 ~~~~~~~~g~~v~~~~~~~---~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~ 223 (384)
T 3saj_A 147 VLDTAAEKNWQVTAVNILT---TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMD 223 (384)
T ss_dssp HHHHHHHHTCEEEEEEGGG---CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGG
T ss_pred HHHHhhhcCceEEEEEecc---CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCccc
Confidence 9999999999999887555 6788999999999999999999999999999999999999998888999999864433
Q ss_pred cccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCC---
Q 044527 277 LHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQ--- 353 (860)
Q Consensus 277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~--- 353 (860)
.+. ....+. ..+++++.++.+++|.+++|.++|+++++++.|+.....+..+++++|||++++++|+++++..+
T Consensus 224 ~~~--~~~~~~-~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~ 300 (384)
T 3saj_A 224 IDL--NKFKES-GANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDI 300 (384)
T ss_dssp SCH--HHHHHT-TCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccH--HHhhCC-CcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccce
Confidence 211 122333 56789999999999999999999999998876644334567889999999999999999987521
Q ss_pred -----------------CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCcee
Q 044527 354 -----------------VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGITK 412 (860)
Q Consensus 354 -----------------~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~~ 412 (860)
.++.+|.++|++++|+|++|+++| ++|++..+ .|+|++++++++.+||.|++..++..
T Consensus 301 ~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~-~~~i~~~~~~g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 301 SRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNY-TLHVIEMKHDGIRKIGYWNEDDKFVP 376 (384)
T ss_dssp CCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSC-CEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred ecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccc-eEEEEEeccCCcceeEEEcCCCCccc
Confidence 247899999999999999999999 99999988 99999999999999999999877653
No 9
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=5.1e-44 Score=412.01 Aligned_cols=375 Identities=17% Similarity=0.259 Sum_probs=314.5
Q ss_pred CceEEEEEEEecCCc-------------chhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCHHHHHHHHHHhhc-
Q 044527 40 SDEVHVGIILDMRSW-------------TGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDPFHALTTASNLMQ- 104 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-------------~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~~~a~~~~~~li~- 104 (860)
+++|+||+++|++|. .|.....|+++|+||||++++++| ++|+++++|+++++..|++.+.++++
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~ 91 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 91 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhC
Confidence 568999999999864 377888999999999999999997 99999999999999999999988774
Q ss_pred -----------------------cCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCC
Q 044527 105 -----------------------NVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQD 156 (860)
Q Consensus 105 -----------------------~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~ 156 (860)
+++|.+||||.+ |.++.+++.+++.+++|+|+++++++ .+++ +|||+.|+
T Consensus 92 ~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~-S~~s~~va~~~~~~~iP~Is~~a~~~-~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 92 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSY-SSVSIQVANLLRLFQIPQISYASTSA-KLSDKSRYDYFARTVPP 169 (555)
T ss_dssp TC--------------------CCCCEEEEEECSS-HHHHHHHHHHHGGGTCCEEESSCCCG-GGGCTTTCTTEEESSCC
T ss_pred cCcccCCCCcccCCCccccccccCCceEEEECCCC-cHHHHHHHHHHhCcCCceEeCCcCCC-ccCCcccCCCceeeCCC
Confidence 568999999999 99999999999999999999999999 9986 89999999
Q ss_pred CchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh-cCC
Q 044527 157 DEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK-SLD 235 (860)
Q Consensus 157 ~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~-~~~ 235 (860)
+. .+++++++++++|||+||++|++|++||. ...+.+++.+++.|+||++.+.++ ...+..++..++.+|+ +++
T Consensus 170 d~---~~~~a~~~ll~~fgw~~V~ii~~d~~~g~-~~~~~~~~~~~~~gi~v~~~~~~~-~~~~~~~~~~~l~~i~~~s~ 244 (555)
T 2e4u_A 170 DF---YQAKAMAEILRFFNWTYVSTVASEGDYGE-TGIEAFEQEARLRNICIATAEKVG-RSNIRKSYDSVIRELLQKPN 244 (555)
T ss_dssp HH---HHHHHHHHHHHHTTCCEEEEEEESSTTHH-HHHHHHHHHHHTTTCEEEEEEEEC-TTCCHHHHHHHHHHHHTCTT
T ss_pred hH---HHHHHHHHHHHHcCCeEEEEEEeeChHHH-HHHHHHHHHHHHCCccEEEEEEeC-CCCChHHHHHHHHHHhccCC
Confidence 99 99999999999999999999999999999 999999999999999999988887 4346889999999996 489
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhhcccCcchhhcccCceeEEEEeccCCchhHHHHH------
Q 044527 236 TKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFT------ 309 (860)
Q Consensus 236 ~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------ 309 (860)
++|||+++...++..+++++.++|+ +++||.++.+........ ...+. +.|++++.++..+.|.+++|+
T Consensus 245 a~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~f~~~~~p~ 319 (555)
T 2e4u_A 245 ARVVVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK-GSEHV-AYGAITLELASHPVRQFDRYFQSLNPY 319 (555)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT-TCHHH-HTTCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred CCEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc-cchhh-cceEEEEEeccCCCCcHHHHHhhCCcc
Confidence 9999999999999999999999996 689999887654321111 11234 678999988776666665553
Q ss_pred ---------HHHHHHhhccCCCCC---------------CCCCChhHHHHhhHHHHHHHHHHhhhcC-------------
Q 044527 310 ---------LRWRREMYLNNPNAE---------------VSELDAYGILAYDTVWAVAKASEKLKTG------------- 352 (860)
Q Consensus 310 ---------~~~~~~~~~~~~~~~---------------~~~~~~~~~~~YDav~~la~Al~~~~~~------------- 352 (860)
+.|+..|+|..+... ...+..+++.+||||+++|+||++++..
T Consensus 320 ~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~~~~ 399 (555)
T 2e4u_A 320 NNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCDAMK 399 (555)
T ss_dssp TCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCGGGT
T ss_pred cCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCccccccC
Confidence 457777877532100 0014467899999999999999998641
Q ss_pred CCChHHHHH-HHHhcccc------cceee-EEe-eCCeecCCccEEEEEee--cC--ceEEeeeecCCCCceeecccccc
Q 044527 353 QVSDEIFYK-QIVNNRFR------GLSGD-FQF-VNGKLTSSREFEIVNVI--GK--TIKRVGFWNPTTGITKEMNSSVF 419 (860)
Q Consensus 353 ~~~~~~l~~-~l~~~~~~------g~tG~-v~F-~~g~~~~~~~~~i~~~~--~~--~~~~vG~~~~~~~~~~~~~~~~~ 419 (860)
..++++|.+ +|++++|+ |.+|. +.| ++|++.. .|+|++++ ++ .+++||.|++ .+.
T Consensus 400 ~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~~--~y~I~~~~~~~g~~~~~~VG~~~~--~l~-------- 467 (555)
T 2e4u_A 400 ILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGMG--RYNVFNLQQTGGKYSYLKVGHWAE--TLS-------- 467 (555)
T ss_dssp SCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCCC--CEEEEEEECTTSSCEEEEEEEESS--SEE--------
T ss_pred CCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCccc--eEEEEEEEecCCcEEEEEEEEecc--eEE--------
Confidence 023678998 99999999 99998 999 9999986 89999995 33 4899999984 222
Q ss_pred ccccccccCCCCCCCcceeecCCCCCCCCCcccC
Q 044527 420 INKMDTISSTSPNDELEVIIWPGGSAAIPAGVGK 453 (860)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~ 453 (860)
++.+.|.|++ .++|++.|+
T Consensus 468 -------------i~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 468 -------------LDVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp -------------CCGGGCCCTT--SSCCCCCSS
T ss_pred -------------EeccccccCC--CCCcceeeC
Confidence 1235689987 678999998
No 10
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=400.63 Aligned_cols=352 Identities=16% Similarity=0.244 Sum_probs=299.1
Q ss_pred CceEEEEEEEecC---------C---c-chhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCHHHHHHHHHHhhcc
Q 044527 40 SDEVHVGIILDMR---------S---W-TGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDPFHALTTASNLMQN 105 (860)
Q Consensus 40 ~~~i~IG~l~~~~---------~---~-~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~~~a~~~~~~li~~ 105 (860)
+++|.||++||++ + . .|.+...|+++|+||||+++++|| ++|+++++|+|+++..|++++.+++++
T Consensus 11 ~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~~ 90 (479)
T 3sm9_A 11 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 90 (479)
T ss_dssp CCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHhC
Confidence 6789999999996 2 1 478889999999999999999997 999999999999999999999999986
Q ss_pred ------------------------CCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCC
Q 044527 106 ------------------------VDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQD 156 (860)
Q Consensus 106 ------------------------~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~ 156 (860)
++|.|||||.+ |+++.+++.+++.+++|+|++++++| .+++ ++||+.|+
T Consensus 91 ~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~-S~~s~ava~i~~~~~iP~Is~~a~~~-~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 91 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSY-SSVSIQVANLLRLFQIPQISYASTSA-KLSDKSRYDYFARTVPP 168 (479)
T ss_dssp CC-----------------------CEEEEECCSS-HHHHHHHHHHHGGGTCCEEESSCCCG-GGGCTTTTTTEEESSCC
T ss_pred CCccCCCCCCccCCCCccccccCCCceEEEECCCC-cHHHHHHHHHHhcCCccEECCCcCCc-cccCcccCCCeEEeCCc
Confidence 47999999999 99999999999999999999999999 9987 89999999
Q ss_pred CchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHH-HhhhcCC
Q 044527 157 DEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKL-SMLKSLD 235 (860)
Q Consensus 157 ~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l-~~i~~~~ 235 (860)
+. .+++++++++++|||+||++|++|++||+ ...+.+++++++.|+||+..+.++ ...+..++...+ +.|++++
T Consensus 169 d~---~~~~a~~~ll~~fgw~~V~ii~~dd~~G~-~~~~~~~~~~~~~Gi~v~~~~~i~-~~~~~~d~~~~l~~~i~~s~ 243 (479)
T 3sm9_A 169 DF---YQAKAMAEILRFFNWTYVSTVASEGDYGE-TGIEAFEQEARLRNISIATAEKVG-RSNIRKSYDSVIRELLQKPN 243 (479)
T ss_dssp TH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHHHHHHHHHTTTCEEEEEEEEC-C--CHHHHHHHHHHHHTCTT
T ss_pred HH---HHHHHHHHHHHHCCCeEEEEEEecchhhH-HHHHHHHHHHHHCCceEEEEEEcC-CCCChHHHHHHHHHHHhcCC
Confidence 99 99999999999999999999999999999 999999999999999999998887 445678999999 6789999
Q ss_pred CeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhhcccCcchhhcccCceeEEEEeccCCchhHHHHH------
Q 044527 236 TKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFT------ 309 (860)
Q Consensus 236 ~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~------ 309 (860)
++|||+++..+++..+++++.++|+. ++||.++.+........ ...+. +.|++++.++..+.|.+++|+
T Consensus 244 a~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~fl~~~~p~ 318 (479)
T 3sm9_A 244 ARVVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHV-AYGAITLELASQPVRQFDRYFQSLNPY 318 (479)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTT-TTTCEEEEECCCCCHHHHHHHHTCCTT
T ss_pred CeEEEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-ccccc-CceEEEEEeccCCCcchhhHhhccCcC
Confidence 99999999999999999999999974 89999998764311111 11234 789999999999999998886
Q ss_pred ---------HHHHHHhhccCCCCC--------C-------CCCChhHHHHhhHHHHHHHHHHhhhc--CC----------
Q 044527 310 ---------LRWRREMYLNNPNAE--------V-------SELDAYGILAYDTVWAVAKASEKLKT--GQ---------- 353 (860)
Q Consensus 310 ---------~~~~~~~~~~~~~~~--------~-------~~~~~~~~~~YDav~~la~Al~~~~~--~~---------- 353 (860)
+.|+..|.|..+... + .........+||||+++|+|||++.. +.
T Consensus 319 ~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~~~~ 398 (479)
T 3sm9_A 319 NNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMK 398 (479)
T ss_dssp TCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCC
Confidence 457778887543211 0 01123357899999999999999863 11
Q ss_pred -CChHHHH-HHHHhcccccc------e-eeEEe-eCCeecCCccEEEEEeec--C--ceEEeeeec
Q 044527 354 -VSDEIFY-KQIVNNRFRGL------S-GDFQF-VNGKLTSSREFEIVNVIG--K--TIKRVGFWN 405 (860)
Q Consensus 354 -~~~~~l~-~~l~~~~~~g~------t-G~v~F-~~g~~~~~~~~~i~~~~~--~--~~~~vG~~~ 405 (860)
..+++|. ++|+++.|.+. . +.+.| ++|+... .|+|++|.. + .+++||.|+
T Consensus 399 ~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~~--~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 399 ILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGMG--RYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp SCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCCC--CEEEEEEEESSSCEEEEEEEEES
T ss_pred CcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCccc--ceEEEEEEECCCcEEEEEEEEEe
Confidence 1267899 99999999987 4 46899 9999988 899999972 2 378999997
No 11
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=2.8e-44 Score=403.53 Aligned_cols=380 Identities=13% Similarity=0.130 Sum_probs=310.4
Q ss_pred ceEEEEEEEecCCcc---hhhHHH-HHHHHHHHHHhccCCcc-cEEEEEEecC-----CCCHHHHHHHHHHhhccCCeEE
Q 044527 41 DEVHVGIILDMRSWT---GKITNS-CISMAIADFYAVNTHCK-TRLILHSRDS-----QGDPFHALTTASNLMQNVDLQA 110 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~---g~~~~~-a~~~Av~~iN~~~~~l~-~~l~~~~~D~-----~~~~~~a~~~~~~li~~~~v~a 110 (860)
++|+||+++|++|.. |..... |+++|+|+||++++++| ++|+++++|+ +|++..++..+.+++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999999743 667777 99999999999999996 9999999999 5666788889989887779999
Q ss_pred EEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEE---
Q 044527 111 IICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILI--- 182 (860)
Q Consensus 111 viGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii--- 182 (860)
||||.+ |..+.+++.+++.+++|+|+++++++ .+++ ++||+.|++. .+++++++++++|+|+||++|
T Consensus 81 viG~~~-S~~~~av~~~~~~~~ip~is~~~~~~-~ls~~~~~~~~fr~~p~~~---~~~~a~~~~l~~~~w~~v~ii~~~ 155 (435)
T 1dp4_A 81 FLGPGC-VYSAAPVGRFTAHWRVPLLTAGAPAL-GIGVKDEYALTTRTGPSHV---KLGDFVTALHRRLGWEHQALVLYA 155 (435)
T ss_dssp EECCCS-HHHHHHHHHHHHHHTCCEEESCCCCG-GGGCTTTSTTEEECSCCHH---HHHHHHHHHHHHHTCCSEEEEEEE
T ss_pred EECCCC-hHHHHHHHHHHHhcCCcEEccccccc-ccCcccccCeEEEecCcHH---HHHHHHHHHHHHCCCcEEEEEEEc
Confidence 999999 99999999999999999999999998 8876 8999999999 999999999999999999999
Q ss_pred ---EecCCCCCcCCHHHHHHHHhh-CCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHc
Q 044527 183 ---HEDNTWGNDNTIPYLFDSLHD-NDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKL 258 (860)
Q Consensus 183 ---~~~~~~g~~~~~~~l~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~ 258 (860)
+++++||. ..+.+.+.+++ .|+||+....++ .+.+++..++++|++ ++|+|++++...++..++++++++
T Consensus 156 d~~~~~~~~g~--~~~~~~~~~~~~~g~~v~~~~~~~---~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~ 229 (435)
T 1dp4_A 156 DRLGDDRPCFF--IVEGLYMRVRERLNITVNHQEFVE---GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNA 229 (435)
T ss_dssp CCSSSCCHHHH--HHHHHHHHHHHHHCCEEEEEEECT---TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHT
T ss_pred cCCCCcchHHH--HHHHHHHHHHhhcCeEEEEEEEec---CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHc
Confidence 66666664 34667788888 999999877654 567889999999998 999999999999999999999999
Q ss_pred CCccCCeEEEecChhhhhcc---------------cCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCC-C
Q 044527 259 GMMSKGYVWIATAATMNFLH---------------SMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNP-N 322 (860)
Q Consensus 259 gl~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~ 322 (860)
|+..++++||.++.+..... .......++ .++++.+.+..++++.+++|.++|++.++.... .
T Consensus 230 g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 308 (435)
T 1dp4_A 230 GLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQA-FQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFT 308 (435)
T ss_dssp TCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHH-GGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHH-hheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcc
Confidence 99777799999886543210 001122344 678888888778889999999999877653100 0
Q ss_pred CCCCCCChhHHHHhhHHHHHHHHHHhhhcCC---CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEe--ecC
Q 044527 323 AEVSELDAYGILAYDTVWAVAKASEKLKTGQ---VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNV--IGK 396 (860)
Q Consensus 323 ~~~~~~~~~~~~~YDav~~la~Al~~~~~~~---~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~--~~~ 396 (860)
.....+..+++++||||+++++||+++...+ .++++|.++|++++|+|++|++.| ++|++.. .|+|+++ .++
T Consensus 309 ~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~~--~~~i~~~~~~~g 386 (435)
T 1dp4_A 309 VEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRDT--DFSLWDMDPETG 386 (435)
T ss_dssp CCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBCC--CEEEEEECTTTC
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCccc--eeEEEEecCCCC
Confidence 0011256789999999999999999994321 237899999999999999999999 9999986 8999999 456
Q ss_pred ceEEeeeecCCCCceeeccccccccccccccCCCCCCCcceeecCCCCCCCCCcccC
Q 044527 397 TIKRVGFWNPTTGITKEMNSSVFINKMDTISSTSPNDELEVIIWPGGSAAIPAGVGK 453 (860)
Q Consensus 397 ~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~w~~~~~~~p~~~~~ 453 (860)
++++||.|++..+. ... .+.+.|.||++..+...+.|-
T Consensus 387 ~~~~vg~~~~~~~~-l~~------------------~~~~~i~W~~~~~P~~~p~Cg 424 (435)
T 1dp4_A 387 AFRVVLNYNGTSQE-LMA------------------VSEHKLYWPLGYPPPDVPKCG 424 (435)
T ss_dssp CEEEEEEECTTTCC-EEE------------------STTCCCCCTTSSCCCSSCTTC
T ss_pred cEEEEEEecCCCce-EEE------------------cCCceeeCCCCCCCCCCCCCC
Confidence 79999999987641 111 022569999886555556664
No 12
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=9e-44 Score=399.71 Aligned_cols=354 Identities=13% Similarity=0.147 Sum_probs=293.2
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccC----Ccc-cEEEEEEecCCCCHHHHHHHHHHhhc---cCCe
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNT----HCK-TRLILHSRDSQGDPFHALTTASNLMQ---NVDL 108 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~----~l~-~~l~~~~~D~~~~~~~a~~~~~~li~---~~~v 108 (860)
+++|+||+++|++|.. |.....|+++|+|+||++++ +++ ++|+++++|++|++. |+..+.+++. +++|
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v 85 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKP 85 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCC
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCc
Confidence 5689999999999864 67788999999999999998 786 999999999999998 7776666542 3389
Q ss_pred EEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc------ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEE
Q 044527 109 QAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS------YSIQIDQDDEASQSQARGISDFISVFKWKEVILI 182 (860)
Q Consensus 109 ~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~------~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii 182 (860)
.+||||.+ |.++.+++.+++.+++|+|+++++++ .+++ ++||+.|++. .+++++++++++|+|+||++|
T Consensus 86 ~aiiG~~~-S~~~~~v~~~~~~~~ip~is~~~~~~-~ls~~~~~~~~~fr~~p~~~---~~~~a~~~~~~~~~w~~v~ii 160 (441)
T 1jdp_A 86 DLILGPVC-EYAAAPVARLASHWDLPMLSAGALAA-GFQHKDSEYSHLTRVAPAYA---KMGEMMLALFRHHHWSRAALV 160 (441)
T ss_dssp SEEECCCS-HHHHHHHHHHHHHHTCCEEESCCCSG-GGGCTTTTTTTEEECSCCHH---HHHHHHHHHHHHHTCCEEEEE
T ss_pred eEEECCCc-hhhHHHHHHHHhhcCCcEEcCCCCch-hhccccccCCceEEecCcHH---HHHHHHHHHHHhcCCcEEEEE
Confidence 99999999 99999999999999999999999998 8863 8999999999 999999999999999999999
Q ss_pred EecCCCCCcC---CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcC
Q 044527 183 HEDNTWGNDN---TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLG 259 (860)
Q Consensus 183 ~~~~~~g~~~---~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g 259 (860)
++|++||+ . ..+.+++.+++.|+||+....++ .+..++...+++|+ +++|+|++++..+++..+++++++.|
T Consensus 161 ~~d~~~g~-~~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~g 235 (441)
T 1jdp_A 161 YSDDKLER-NCYFTLEGVHEVFQEEGLHTSIYSFDE---TKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHG 235 (441)
T ss_dssp EECCSSSC-HHHHHHHHHHHHHHHHTCEEEEEEECT---TSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEcCCccc-chHHHHHHHHHHHHhcCcEEEEEEecC---CcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcC
Confidence 99999999 8 89999999999999999877655 34457899999999 99999999999999999999999999
Q ss_pred CccCCeEEEecChhhh------hcccCc---chhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhcc-CCCCCCCCCC
Q 044527 260 MMSKGYVWIATAATMN------FLHSMD---SLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLN-NPNAEVSELD 329 (860)
Q Consensus 260 l~~~~~~~i~~~~~~~------~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~~ 329 (860)
+..+.++||.++.... .+...+ ...... ..++.++..+.++.|.+++|.++|+++++.. +. ....+.
T Consensus 236 l~~~~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~--~~~~~~ 312 (441)
T 1jdp_A 236 MTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQA-YSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLN--MEDYVN 312 (441)
T ss_dssp CTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHH-GGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCC--CCSSCC
T ss_pred CCCCCEEEEEEeccccccccCCCCccCCcccHHHHHH-HHhheEEeecCCCCchHHHHHHHHHHHHhhCCCC--ccchhh
Confidence 9877899998873211 111111 101122 4456677777778899999999998875421 11 011245
Q ss_pred hhHHHHhhHHHHHHHHHHhhhcCC---CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEee---cCceEEee
Q 044527 330 AYGILAYDTVWAVAKASEKLKTGQ---VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVI---GKTIKRVG 402 (860)
Q Consensus 330 ~~~~~~YDav~~la~Al~~~~~~~---~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~---~~~~~~vG 402 (860)
.+++++||||+++|+||+++...+ .++++|.++|++++|+|++|++.| ++|++.. .|+|++++ ++.+++||
T Consensus 313 ~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~~--~~~I~~~~~~~~g~~~~VG 390 (441)
T 1jdp_A 313 MFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRYG--DFSVIAMTDVEAGTQEVIG 390 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBCC--EEEEEEEEETTTTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCccc--cEEEEecccCCCCceEEEE
Confidence 688999999999999999995322 347899999999999999999999 9999986 89999996 45699999
Q ss_pred eecCCCC
Q 044527 403 FWNPTTG 409 (860)
Q Consensus 403 ~~~~~~~ 409 (860)
.|++..+
T Consensus 391 ~~~~~~~ 397 (441)
T 1jdp_A 391 DYFGKEG 397 (441)
T ss_dssp EEETTTT
T ss_pred EEcCCCC
Confidence 9998765
No 13
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.4e-42 Score=392.82 Aligned_cols=355 Identities=16% Similarity=0.260 Sum_probs=299.7
Q ss_pred CceEEEEEEEecCCc-----------------chhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCHHHHHHHHHH
Q 044527 40 SDEVHVGIILDMRSW-----------------TGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDPFHALTTASN 101 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-----------------~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~~~a~~~~~~ 101 (860)
+++|.||++||.+.. .|.+...|+.+||||||+++++|| ++|+++++|+|+++..|++.+.+
T Consensus 15 ~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~~ 94 (496)
T 3ks9_A 15 DGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSIE 94 (496)
T ss_dssp CCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHHH
Confidence 689999999997631 256788999999999999999998 99999999999999999999999
Q ss_pred hh----------------------------ccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----
Q 044527 102 LM----------------------------QNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS----- 148 (860)
Q Consensus 102 li----------------------------~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~----- 148 (860)
++ .+++|.|||||.+ |+++.+++.+++.+++|+|++++++| .+++
T Consensus 95 ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~-S~~s~ava~i~~~~~iP~Is~~a~~~-~lsd~~~~p 172 (496)
T 3ks9_A 95 FIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGS-SSVAIQVQNLLQLFDIPQIAYSATSI-DLSDKTLYK 172 (496)
T ss_dssp HHSTTC--------------------------CCEEEEECCSS-HHHHHHHHHHHGGGTCCEEESSCCCG-GGGCTTTCT
T ss_pred HHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCc-cHHHHHHHHHHhhcceeEECCCcCCc-cccCccCCC
Confidence 98 3568999999999 99999999999999999999999999 9987
Q ss_pred ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHH
Q 044527 149 YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKL 228 (860)
Q Consensus 149 ~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l 228 (860)
++||+.|+|. .+++++++++++|||+||++|++|++||+ ...+.+++++++.|+||++.+.++ ...+..++..++
T Consensus 173 ~~frt~psd~---~~~~ai~~ll~~fgw~~V~li~~dd~~G~-~~~~~~~~~~~~~Gi~v~~~~~i~-~~~~~~d~~~~l 247 (496)
T 3ks9_A 173 YFLRVVPSDT---LQARAMLDIVKRYNWTYVSAVHTEGNYGE-SGMDAFKELAAQEGLSIAHSDKIY-SNAGEKSFDRLL 247 (496)
T ss_dssp TEEESSCCTH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HHHHHHHHHHHHTTCEEEEEEEEC-TTCCHHHHHHHH
T ss_pred ceEEecCChH---HHHHHHHHHHHHcCCcEEEEEEeccHHHH-HHHHHHHHHHHHcCceEEEEEEEC-CCCCHHHHHHHH
Confidence 8999999999 99999999999999999999999999999 999999999999999999988887 556788999999
Q ss_pred HhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhhcccCcchhhcccCceeEEEEeccCCchhHH
Q 044527 229 SMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELH 306 (860)
Q Consensus 229 ~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 306 (860)
.+|+++ +++||++++...++..+++++.+.|++ ..+.||.++.+........ ..... +.|.+++.++.++.|.++
T Consensus 248 ~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~-~k~~~i~s~~w~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~ 324 (496)
T 3ks9_A 248 RKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVV-GEFSLIGSDGWADRDEVIE-GYEVE-ANGGITIKLQSPEVRSFD 324 (496)
T ss_dssp HHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCC-SCCEEEECTTTTTCHHHHT-TCHHH-HTTCEEEEECCCCCHHHH
T ss_pred HHHHhccCceEEEEEecChHHHHHHHHHHHHhCCC-CcEEEEEechhcccccccc-ccccc-cCceEEEeccCCcCcchH
Confidence 999974 899999999999999999999999985 3368898887754321111 12234 789999999999999999
Q ss_pred HHH---------------HHHHHHhhccCCCCC------------CCC------CChhHHHHhhHHHHHHHHHHhhhcCC
Q 044527 307 NFT---------------LRWRREMYLNNPNAE------------VSE------LDAYGILAYDTVWAVAKASEKLKTGQ 353 (860)
Q Consensus 307 ~f~---------------~~~~~~~~~~~~~~~------------~~~------~~~~~~~~YDav~~la~Al~~~~~~~ 353 (860)
+|+ +.|...|.|..+... +.. .......+|+||+++|+|||++..+.
T Consensus 325 ~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~ 404 (496)
T 3ks9_A 325 DYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHAL 404 (496)
T ss_dssp HHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 986 357778888543210 000 01223469999999999999985310
Q ss_pred -------------CChHHHHHHHHhcccccceee-EEe-eCCeecCCccEEEEEeec--C---ceEEeeeecC
Q 044527 354 -------------VSDEIFYKQIVNNRFRGLSGD-FQF-VNGKLTSSREFEIVNVIG--K---TIKRVGFWNP 406 (860)
Q Consensus 354 -------------~~~~~l~~~l~~~~~~g~tG~-v~F-~~g~~~~~~~~~i~~~~~--~---~~~~vG~~~~ 406 (860)
..+++|.++|+++.|.+.+|+ +.| ++|+... .|+|++|+. + .+++||.|++
T Consensus 405 ~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~~--~YdI~n~~~~~~~~~~~~~VG~~~~ 475 (496)
T 3ks9_A 405 CPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAPG--RYDIMNLQYTEANRYDYVHVGTWHE 475 (496)
T ss_dssp STTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCCC--EEEEEEEEECC--CEEEEEEEEEET
T ss_pred CCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCccc--eEEEEEEEECCCCCEEEEEEEEEeC
Confidence 126799999999999999995 789 9999998 899999972 2 3789999973
No 14
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=2.5e-43 Score=398.48 Aligned_cols=354 Identities=15% Similarity=0.261 Sum_probs=273.5
Q ss_pred CceEEEEEEEecCCc-------------chhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCHHHHHHHHHHhhcc
Q 044527 40 SDEVHVGIILDMRSW-------------TGKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDPFHALTTASNLMQN 105 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-------------~g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~~~a~~~~~~li~~ 105 (860)
+++|+||+++|+++. .|.+...|+++|+||||+++++|| ++|+++++|+|+++..|++.+.+++++
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~ 93 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA 93 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGG
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhC
Confidence 678999999999973 377889999999999999999998 999999999999999999999999874
Q ss_pred ----------------------CCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCc
Q 044527 106 ----------------------VDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDE 158 (860)
Q Consensus 106 ----------------------~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~ 158 (860)
++|.+||||.+ |+.+.+++.+++.+++|+|++++++| .+++ ++||+.|++.
T Consensus 94 ~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~-S~~s~ava~~~~~~~iP~Is~~a~~~-~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASG-SSVSIMVANILRLFQIPQISYASTAP-ELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GSCCCC--------------CCCCEEEEECCSS-HHHHHHHHHHHTTTTCCEEESSCCCG-GGGCTTTTTTEEESSCCTH
T ss_pred CcccCCCCcccCCCCCcccccCCCcEEEEcCCC-cHHHHHHHHHHHhCCCCEEccccCCc-cccCcccCCceEEecCchH
Confidence 68999999999 99999999999999999999999999 9987 8999999999
Q ss_pred hhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhh-CCceEeEEEeccCCCCChH--HHHHHHHhhh-cC
Q 044527 159 ASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHD-NDIDIARRTSISLASSTHD--QIIEKLSMLK-SL 234 (860)
Q Consensus 159 ~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~-~g~~i~~~~~~~~~~~~~~--~~~~~l~~i~-~~ 234 (860)
.+++++++++++|||+||++|++|++||+ ...+.+++.+++ .|+||++.+.++ ...... ++...+.+++ ++
T Consensus 172 ---~~~~a~~~ll~~fgw~~V~li~~d~~~G~-~~~~~~~~~~~~~~Gi~va~~~~i~-~~~~~~~~d~~~~l~~i~~~s 246 (481)
T 3mq4_A 172 ---FQAQAMVDIVKALGWNYVSTLASEGSYGE-KGVESFTQISKEAGGLSIAQSVRIP-QERKDRTIDFDRIIKQLLDTP 246 (481)
T ss_dssp ---HHHHHHHHHHHHHTCCEEEEC---CHHHH-HHHHHHHHCC---CCCEECCCCCCC-CC------CCSHHHHCCCCC-
T ss_pred ---HHHHHHHHHHHHCCCeEEEEEEEcchhHH-HHHHHHHHHHHHhCCEEEEEEEEcC-CCCccchHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999 999999998885 799999887776 333333 7888999998 68
Q ss_pred CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhhcccCcchhhcccCceeEEEEeccCCchhHHHHH-----
Q 044527 235 DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFT----- 309 (860)
Q Consensus 235 ~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~----- 309 (860)
+++|||+++..+++..+++++.+.|++. .++||.++.+........ ..... +.|.+++.++..+.|.+++|+
T Consensus 247 ~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~~-~~~~~-~~G~l~~~~~~~~ipgf~~fl~~~~p 323 (481)
T 3mq4_A 247 NSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPLH-QHEDI-AEGAITIQPKRATVEGFDAYFTSRTL 323 (481)
T ss_dssp ---CEEECCCSSHHHHHC-----------CCCEEEC-------------------CCCEEEEECCCCCHHHHHHHHTCCT
T ss_pred CCEEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECcccccccccc-ccchh-hccEEEEecCcCccccHHHHhhcCCc
Confidence 9999999999999999999999999853 379999988764322111 12244 789999999999999999886
Q ss_pred ----------HHHHHHhhccCCCC-----------C-CC--------CCChhHHHHhhHHHHHHHHHHhhhcC--C----
Q 044527 310 ----------LRWRREMYLNNPNA-----------E-VS--------ELDAYGILAYDTVWAVAKASEKLKTG--Q---- 353 (860)
Q Consensus 310 ----------~~~~~~~~~~~~~~-----------~-~~--------~~~~~~~~~YDav~~la~Al~~~~~~--~---- 353 (860)
+.|+..|.|..+.. . +. ........+||||+++|+|||++..+ .
T Consensus 324 ~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~ 403 (481)
T 3mq4_A 324 ENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYRG 403 (481)
T ss_dssp TTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 35677777754321 0 00 11144567999999999999998631 0
Q ss_pred -------CChHHHHHHHHhccccccee-eEEe-eCCeecCCccEEEEEee--cC---ceEEeeeec
Q 044527 354 -------VSDEIFYKQIVNNRFRGLSG-DFQF-VNGKLTSSREFEIVNVI--GK---TIKRVGFWN 405 (860)
Q Consensus 354 -------~~~~~l~~~l~~~~~~g~tG-~v~F-~~g~~~~~~~~~i~~~~--~~---~~~~vG~~~ 405 (860)
..+++|.++|+++.|.+.+| .+.| ++|+... .|+|++|+ ++ .+++||.|.
T Consensus 404 ~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~~--~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 404 VCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAPG--RYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCCC--EEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCce--eEEEEEEEECCCCcEEEEEEEEEc
Confidence 12579999999999999999 6899 9999998 89999997 22 578999997
No 15
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=3e-42 Score=379.86 Aligned_cols=320 Identities=18% Similarity=0.281 Sum_probs=269.2
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHH-hhccCCeEEEEe-----
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASN-LMQNVDLQAIIC----- 113 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~-li~~~~v~aviG----- 113 (860)
+++|+||+++|++ ..+.|+++|+++||++++..+++|+++..|+++||..+++.+++ |+++ +|.+|||
T Consensus 3 ~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~-~V~aiiG~~~~~ 76 (384)
T 3qek_A 3 PKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLISS-QVYAILVSHPPA 76 (384)
T ss_dssp CEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTGGG-TEEEEEECC---
T ss_pred ceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHHHc-CceEEEEecCCC
Confidence 6789999999998 58899999999999999777799999999999999999987666 7886 9999999
Q ss_pred cCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC
Q 044527 114 IGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW 188 (860)
Q Consensus 114 p~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~ 188 (860)
|.| |.++.+++.+++.+++|+|+++++++ .+++ ++||+.|++. .+++++++++++++|+||++|++|++|
T Consensus 77 ~~~-s~~~~a~~~~~~~~~iP~is~~~~~~-~ls~~~~~~~~fr~~~~~~---~~~~a~~~~~~~~gw~~v~ii~~d~~~ 151 (384)
T 3qek_A 77 PTD-HLTPTPISYTAGFYRIPVIGLTTRMS-IYSDKSIHLSFLRTVPPYS---HQALVWFEMMRLFNWNHVILIVSDDHE 151 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCG-GGGCSSSCTTEEESSCCGG---GHHHHHHHHHHHTTCCEEEEEEESSHH
T ss_pred Ccc-chhHHHHHHHHhcCCCCEEecccCch-hccCcccCCceEEecCChH---HHHHHHHHHHHHcCCeEEEEEEEcCcc
Confidence 567 78889999999999999999999998 8875 8999999999 999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHhhCCceE-----------eEE-------EeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHH
Q 044527 189 GNDNTIPYLFDSLHDNDIDI-----------ARR-------TSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASH 250 (860)
Q Consensus 189 g~~~~~~~l~~~~~~~g~~i-----------~~~-------~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~ 250 (860)
|+ +..+.+++.+++.|+++ .+. +.++....+.+|+..++.+|+++++|+|++++..+++..
T Consensus 152 G~-~~~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~ 230 (384)
T 3qek_A 152 GR-AAQKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATA 230 (384)
T ss_dssp HH-HHHHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHH
T ss_pred cH-HHHHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHH
Confidence 99 99999999999999753 221 112101245678999999999999999999999999999
Q ss_pred HHHHHHHcCCccCCeEEEecChhhhhcccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCCh
Q 044527 251 LFLNAKKLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDA 330 (860)
Q Consensus 251 il~~a~~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 330 (860)
++++|+++||++.+++||.++.+.... ...+. ..|++++..+.++.
T Consensus 231 ~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~-~~g~lg~~~~~~~~---------------------------- 276 (384)
T 3qek_A 231 VYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYA-PDGIIGLQLINGKN---------------------------- 276 (384)
T ss_dssp HHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSC-CTTCEEEEETTTTC----------------------------
T ss_pred HHHHHHHcCCccCCeEEEEeccccccc-----ccccc-CCccEEEEEcCCCc----------------------------
Confidence 999999999988789999999865321 12344 78999999886542
Q ss_pred hHHHHhhHHHHHHHHHHhhhcCC--------------C--ChHHHHHHHHhccc-ccceeeEEe-eCCeecCCccEEEEE
Q 044527 331 YGILAYDTVWAVAKASEKLKTGQ--------------V--SDEIFYKQIVNNRF-RGLSGDFQF-VNGKLTSSREFEIVN 392 (860)
Q Consensus 331 ~~~~~YDav~~la~Al~~~~~~~--------------~--~~~~l~~~l~~~~~-~g~tG~v~F-~~g~~~~~~~~~i~~ 392 (860)
.++.+||||+++|+|++++..+. + .+..|.+.+++++| +|++|+++| ++|++..+ .|+|++
T Consensus 277 ~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~-~~~I~~ 355 (384)
T 3qek_A 277 ESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFA-QYSIMN 355 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSC-CEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcc-cEEEEE
Confidence 26889999999999999886311 1 26789999999998 999999999 99999666 999999
Q ss_pred eecCceEEeeeecC
Q 044527 393 VIGKTIKRVGFWNP 406 (860)
Q Consensus 393 ~~~~~~~~vG~~~~ 406 (860)
++++++++||.|++
T Consensus 356 ~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 356 LQNRKLVQVGIFNG 369 (384)
T ss_dssp EETTEEEEEEEECS
T ss_pred EcCCceEEEEEEeC
Confidence 99999999999984
No 16
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=6.3e-38 Score=343.25 Aligned_cols=336 Identities=14% Similarity=0.137 Sum_probs=285.1
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCC-CHHHHHHHHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQG-DPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
.++|+||+++|+||+. |+..+.|+++|++++| ++++|++|+++++|+++ +|..+++.+.+|+.+++|.+||||.
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~ 80 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLY 80 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 5789999999999975 8999999999999998 67788999999999986 8999999999999998999999999
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~ 192 (860)
+ |..+.++++++++.++|+|+++++++ .+++ |+||+.|++. .++.++++++++.+|++|++|++|+.||. .
T Consensus 81 ~-S~~~~a~~~~~~~~~vp~i~~~a~~~-~~~~~~~~~fr~~~~~~---~~~~~~~~~~~~~g~k~vaii~~~~~~g~-~ 154 (371)
T 4f06_A 81 F-TPNAMAVAPLLQEAKVPMVVMNAATS-SITEKSPYIVRTSFTMF---QNTVPAAKVAKQKGATKVAIAVSDYGPGI-D 154 (371)
T ss_dssp S-HHHHHHHGGGHHHHTCCEEESSCCCG-GGGGGCTTEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-H
T ss_pred c-ccchHHHHHHHHhhcCCccccccccc-hhcccCCcceecccchh---hhhhhhhhhhhhcCceEEEEEcCCcccch-h
Confidence 9 99999999999999999999999998 8876 9999999999 99999999999999999999999999999 9
Q ss_pred CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC-HHHHHHHHHHHHHcCCccCCeEEEecC
Q 044527 193 TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT-HALASHLFLNAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~-~~~~~~il~~a~~~gl~~~~~~~i~~~ 271 (860)
..+.+++.+++.|++|+....++ .+.+|+.+++.+|+++++|+|++... ++++..+++++.+.|+......++.+.
T Consensus 155 ~~~~~~~~~~~~g~~vv~~~~~~---~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 231 (371)
T 4f06_A 155 AETAFKKTFEAEGGKVVEAVRMP---LSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTG 231 (371)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEC---TTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEG
T ss_pred HHHHHHHHHHhcCCceEEEEecC---cccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEec
Confidence 99999999999999999998887 77889999999999999999988775 578888999999999876666666554
Q ss_pred hhhhhcccCcchhhcccCceeEEEEecc--CCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhh
Q 044527 272 ATMNFLHSMDSLVVESSMQGVVGFRRYV--PTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKL 349 (860)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~ 349 (860)
....... . ....+. ..|++...++. .++|..++|+++|+++++... .++.++..+|||++++++|+++.
T Consensus 232 ~~~~~~~-~-~~~~~~-~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~------~~~~~a~~~Yda~~~l~~Ai~~~ 302 (371)
T 4f06_A 232 DVVTEPD-L-PNIGEA-GLGILSTYHYAVSHDSPENKAFLALLQKGGAKLD------EVTMTSVAAYDGARLIYKMIEAT 302 (371)
T ss_dssp GGGCGGG-H-HHHCGG-GTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGG------GCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHH-H-Hhcccc-cCceEEeeccccCCCChhHHHHHHHHHHhcCCCC------CccchHHHHHHHHHHHHHHHHHh
Confidence 4322211 1 112233 56676666554 356899999999998876421 35688999999999999999965
Q ss_pred h-cCCCChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEee--cCce
Q 044527 350 K-TGQVSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVI--GKTI 398 (860)
Q Consensus 350 ~-~~~~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~--~~~~ 398 (860)
. +.+ +++++++|++++|+|++|+++| ++++.... .+.|.+++ ++++
T Consensus 303 ag~~d--~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~-~~~i~~v~~~dGk~ 352 (371)
T 4f06_A 303 SGKSD--PDKAIAAVKGMKWVSPRGEVSIDPETRHITQ-NVYLREVEKVDGKL 352 (371)
T ss_dssp TTSCC--HHHHHHHHTTCEEEETTEEEEECTTTCBEEE-EEEEEEEEEETTEE
T ss_pred cCCCC--HHHHHHHHhCCCeeCCcEEEEEcCCCCcccC-CEEEEEEEecCCEE
Confidence 3 333 6899999999999999999999 66555443 78888876 4554
No 17
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=1.2e-37 Score=343.60 Aligned_cols=345 Identities=14% Similarity=0.138 Sum_probs=292.2
Q ss_pred CceEEEEEEEecCCcc--hhhHHHHHHHHHHHHHhccCCcc-cEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT--GKITNSCISMAIADFYAVNTHCK-TRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~--g~~~~~a~~~Av~~iN~~~~~l~-~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|+++||++++++| +++++++.|+++++..+++.+++|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 5689999999999954 78899999999999999999999 99999999999999999999999998779999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCc
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGND 191 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~ 191 (860)
|..+.+++++++..++|+|++.++++ .++. ++||+.|++. .++.++++++.+++|++|++|+.+++||+
T Consensus 83 -s~~~~a~~~~~~~~~ip~i~~~~~~~-~l~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~vaii~~~~~~g~- 156 (387)
T 3i45_A 83 -SHVGLAVSDFARQRKVLFMASEPLTD-ALTWEKGNRYTYRLRPSTY---MQAAMLAAEAAKLPITRWATIAPNYEYGQ- 156 (387)
T ss_dssp -HHHHHHHHHHHHHHTCCEEECSCCCG-GGTTTTCCTTEEECSCCHH---HHHHHHHHHHTTSSCCEEEEECCSSHHHH-
T ss_pred -hHHHHHHHHHHHHcCceEEecCCCch-hhhhccCCCCEEEeCCChH---HHHHHHHHHHHHcCCCeEEEEeCCchHhH-
Confidence 99999999999999999999998888 7752 9999999999 99999999999999999999999999999
Q ss_pred CCHHHHHHHHhhC--CceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 192 NTIPYLFDSLHDN--DIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 192 ~~~~~l~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
...+.+++.+++. |++++....++ .+..++...+.+++++++++|++.+...++..+++++++.|+... +++.
T Consensus 157 ~~~~~~~~~l~~~~~g~~vv~~~~~~---~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~ 231 (387)
T 3i45_A 157 SAVARFKELLLAARPEVTFVAEQWPA---LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVV 231 (387)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCC---TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEeeecCC---CCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEE
Confidence 9999999999998 89998877766 566789999999999999999999999999999999999998432 3443
Q ss_pred cChh--hhhcccCcchhhcccCceeEEEE--eccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHH
Q 044527 270 TAAT--MNFLHSMDSLVVESSMQGVVGFR--RYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKA 345 (860)
Q Consensus 270 ~~~~--~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~A 345 (860)
+... ........ .+. .+|++... ...+++|..++|.++|+++++. .|+.+++.+|||++++++|
T Consensus 232 ~~~~~~~~~~~~~~---~~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~Yda~~~~a~A 299 (387)
T 3i45_A 232 SMLTGEPEYLNPLK---DEA-PEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE--------DPFVGSLVGYNTLTAMAVA 299 (387)
T ss_dssp EEEEESHHHHGGGG---GGC-CSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHH
T ss_pred eecCCChHHHHHhh---hhc-cCceEEecccccCCCCHHHHHHHHHHHHHHCC--------CCCcHHHHHHHHHHHHHHH
Confidence 3222 11111111 122 45655432 2235789999999999999865 3568999999999999999
Q ss_pred HHhhhcCCCChHHHHHHHHhcccccceeeEEe-e-CCeecCCccEEEEEee-cCceEEeeeecCCCCce
Q 044527 346 SEKLKTGQVSDEIFYKQIVNNRFRGLSGDFQF-V-NGKLTSSREFEIVNVI-GKTIKRVGFWNPTTGIT 411 (860)
Q Consensus 346 l~~~~~~~~~~~~l~~~l~~~~~~g~tG~v~F-~-~g~~~~~~~~~i~~~~-~~~~~~vG~~~~~~~~~ 411 (860)
+++++..+ ++++.++|++++|+|++|+++| + +++... ...|.+++ .++...++.|.+..+..
T Consensus 300 l~~ag~~~--~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~~g~~~i~~w~~~~~~~ 364 (387)
T 3i45_A 300 FEKAGGTE--SETLVETLKDMAFSTPMGPLSFRASDHQSTM--GAWVGRTALRDGKGVMVDWRYVDGGS 364 (387)
T ss_dssp HHHHTSCC--HHHHHHHTTTCEEEETTEEEEBCTTTCBBCC--CEEEEEEEEETTEEEEEEEEEECGGG
T ss_pred HHHhCCCC--HHHHHHHHhcCCCcCCCCCeEEcCCCCcccc--ceeEEEEEeeCCceeEEeeEEeCchh
Confidence 99998644 7999999999999999999999 5 455555 78888876 56678899998765543
No 18
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=4.7e-37 Score=334.50 Aligned_cols=335 Identities=16% Similarity=0.211 Sum_probs=278.1
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|+||+. |...+.|+++|+++||++|+++|++|+++++|++++|..+++.+.+|+.+++|.+|+||.+
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~~ 84 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPAT 84 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCCS
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEecccc
Confidence 6789999999999976 8999999999999999999999999999999999999999999999999989999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhC-CCcEEEEEEecC-CCCCc
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVF-KWKEVILIHEDN-TWGND 191 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~-~w~~v~ii~~~~-~~g~~ 191 (860)
|..+.++++++...++|+|+++++++ .+++ ++||+.|++. .++++++.++.+. ++++++++++++ +||+
T Consensus 85 -s~~~~a~~~~~~~~~vp~i~~~~~~~-~l~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~- 158 (353)
T 4gnr_A 85 -SGATAAAVANATKAGVPLISPSATQD-GLTKGQDYLFIGTFQDS---FQGKIISNYVSEKLNAKKVVLYTDNASDYAK- 158 (353)
T ss_dssp -HHHHHHHHHHHHHTTCCEEESSCCCT-TTTTTCTTEEECSCCHH---HHHHHHHHHHHHTSCCSEEEEEEETTCHHHH-
T ss_pred -CcccceehhhhhccCcceEeeccccc-ccccCCccccccCCCcH---HHHHHHHHHHHHhcCCcEEEEEEcCchHHHH-
Confidence 99999999999999999999999998 8876 9999999999 9999999998664 555666665543 4777
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecC
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 271 (860)
+..+.+. ++.|.+++..+.++ .+.+|+..++.+++++++|+|++.+...++..++++++++|+.. .++.++
T Consensus 159 ~~~~~~~---~~~g~~vv~~~~~~---~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~ 229 (353)
T 4gnr_A 159 GIAKSFR---ESYKGEIVADETFV---AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDK---PIVGGD 229 (353)
T ss_dssp HHHHHHH---HHCCSEEEEEEEEC---TTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCS---CEEECG
T ss_pred HHHHHHH---HHcCCEEEEEEeeC---CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCC---cEEEec
Confidence 6555554 35688999988877 77789999999999999999999999999999999999999743 244444
Q ss_pred hhhhhcccCcchhhcccCceeEEEEecc---CCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHh
Q 044527 272 ATMNFLHSMDSLVVESSMQGVVGFRRYV---PTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEK 348 (860)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~ 348 (860)
..... ........+. ..+.+....+. +.++..++|.++|+++++. .|+.+++++|||++++++|+++
T Consensus 230 ~~~~~-~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~la~Ai~~ 299 (353)
T 4gnr_A 230 GFNGE-EFVQQATAEK-ASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE--------EPSTFAALAYDSVHLVANAAKG 299 (353)
T ss_dssp GGCSH-HHHHHHCTTT-CCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccc-hhhhhhhhhh-hcCccccccccCCCCCCHHHHHHHHHHHHHhCC--------CCChhHHHHHHHHHHHHHHHhc
Confidence 33221 1111111223 55666555443 3467899999999999976 3578999999999999999987
Q ss_pred hhcCCCChHHHHHHHHhc-ccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeec
Q 044527 349 LKTGQVSDEIFYKQIVNN-RFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWN 405 (860)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~-~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~ 405 (860)
++ +++.+.++|+++ +|+|++|+++| ++|++.. .+.|+++++|+|+.+....
T Consensus 300 a~----~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~~--~~~i~~v~~Gk~~~~~~v~ 352 (353)
T 4gnr_A 300 AK----NSGEIKDNLAXTKDFEGVTGQTSFDADHNTVK--TAYMMTMNNGKVEAAEVVK 352 (353)
T ss_dssp CS----SHHHHHHHHHTCCCEEETTEEECCCTTSCCCC--CEEEEEEETTEEEEEEEEC
T ss_pred CC----CHHHHHHHHHhcCCCccCceeEEECCCcCCcC--CeEEEEEECCEEEEEEEeC
Confidence 64 258899999987 59999999999 9999988 7889999999988775543
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=3.7e-37 Score=343.56 Aligned_cols=335 Identities=15% Similarity=0.093 Sum_probs=278.0
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC-CCHHHHHHHHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ-GDPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~-~~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
.++|+||+++|++|.. |.....|+++|+++||+++++++++|+++++|++ +++..+++.+++|+.+++|.+||||.
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~ 91 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGY 91 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSC
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccc
Confidence 5579999999999965 8899999999999999999999999999999987 69999999999999977999999999
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCcccc----------cceEeecCCCchhHHHHHHHHHHHhhC--------CCc
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLT----------SYSIQIDQDDEASQSQARGISDFISVF--------KWK 177 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls----------~~~~r~~p~~~~~~~~~~ai~~~l~~~--------~w~ 177 (860)
+ |..+.+++++++.+++|+|++++ ++ .++ .++||+.|++. .++.+++++++++ +|+
T Consensus 92 ~-s~~~~a~~~~~~~~~ip~i~~~~-~~-~~~~~~~~~~~~~~~~f~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 165 (419)
T 3h5l_A 92 N-LENGTALHDVAADAGVIAMHANT-VA-VHDEMVKSDPDRYWGTFQYDPPET---LYGGGFLKFLKDIEDNGEFSRPNN 165 (419)
T ss_dssp C-SSCSCHHHHHHHHHTCEEEECCC-CH-HHHHHHHHCTTTCTTEEESSCCTH---HHHHHHHHHHHHHHHTTSCCCSSS
T ss_pred c-chhHHHhHHHHHHcCCeEEEcCc-ch-hhhhhhhcCcccCceEEEeCCchH---HHHHHHHHHHHHHHhhccccCCCC
Confidence 9 99999999999999999999753 33 221 17999999999 9999999999875 899
Q ss_pred EEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC-HHHHHHHHHHHH
Q 044527 178 EVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT-HALASHLFLNAK 256 (860)
Q Consensus 178 ~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~-~~~~~~il~~a~ 256 (860)
+|++|+++++||+ ...+.+++.+++.|++|+..+.++ .+.+|+..++.+|+++++|+|++.+. ++++..++++++
T Consensus 166 ~vail~~~~~~g~-~~~~~~~~~~~~~g~~vv~~~~~~---~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~ 241 (419)
T 3h5l_A 166 KIAIITGPGIYSV-NIANAIRDGAGEYGYDVSLFETVA---IPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFM 241 (419)
T ss_dssp EEEEEECSSHHHH-HHHHHHHHHGGGGTCEEEEEEECC---SSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHT
T ss_pred EEEEEEcCcchhH-HHHHHHHHHHHHcCCeEEEEecCC---CCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHH
Confidence 9999999999999 999999999999999999988877 66789999999999999999999865 578999999999
Q ss_pred HcCCccCCeEEEecChhhhhcccCcchhhcccCceeEEEEec-cCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHH
Q 044527 257 KLGMMSKGYVWIATAATMNFLHSMDSLVVESSMQGVVGFRRY-VPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILA 335 (860)
Q Consensus 257 ~~gl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (860)
+.|+ ...|+.+..+... +.. ....+. .+|++....+ .++++..++|.++|+++++..+ ...+++.+
T Consensus 242 ~~g~---~~~~~~~~~~~~~-~~~-~~~g~~-~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p-------~~~~a~~~ 308 (419)
T 3h5l_A 242 TDPT---NSLVYLQYGASLA-AFR-DIAGDN-SVGVTYATVLGTLQDEMGDAFAKAYKERYGDLS-------STASGCQT 308 (419)
T ss_dssp TSCC---SCEEEECSGGGSH-HHH-HHHGGG-GTTCEEEESSCCCSSHHHHHHHHHHHHHHCTTS-------CHHHHHHH
T ss_pred HcCC---CceEEecCCCCcH-HHH-Hhhhhh-cCceEEeecCCCCCCHHHHHHHHHHHHHhCCCC-------CcchhHHH
Confidence 9997 3456666554321 111 111123 5566544433 4567899999999999997631 23589999
Q ss_pred hhHHHHHHHHHHhhhcCC-----CChHHHHHHHHhcccccceeeEEe-eCCeecC------------CccEEEEEeecCc
Q 044527 336 YDTVWAVAKASEKLKTGQ-----VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTS------------SREFEIVNVIGKT 397 (860)
Q Consensus 336 YDav~~la~Al~~~~~~~-----~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~------------~~~~~i~~~~~~~ 397 (860)
|||++++++|+++++... .+++++.++|++++|+|++|.++| ++|+... . .+.|+++++++
T Consensus 309 Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~-~~~i~q~q~g~ 387 (419)
T 3h5l_A 309 YSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGM-PHIFSQIFDKA 387 (419)
T ss_dssp HHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSE-ECEEEECCCTT
T ss_pred HHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccC-CceEEEeeCCc
Confidence 999999999999997632 126789999999999999999999 8888653 1 34577777666
Q ss_pred e
Q 044527 398 I 398 (860)
Q Consensus 398 ~ 398 (860)
+
T Consensus 388 ~ 388 (419)
T 3h5l_A 388 E 388 (419)
T ss_dssp S
T ss_pred e
Confidence 6
No 20
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-36 Score=333.38 Aligned_cols=339 Identities=17% Similarity=0.206 Sum_probs=292.5
Q ss_pred CCceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecC
Q 044527 39 NSDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 39 ~~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
.+.+++||+++|+||+. |.....|+++|++++|+ ++++++++++.|+++++..+.+.+++++.+++|.+||||.
T Consensus 13 ~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~ 89 (366)
T 3td9_A 13 MRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEV 89 (366)
T ss_dssp ---CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred hcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccC
Confidence 35689999999999975 88999999999999998 6679999999999999999999999999987799999999
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHH-hhCCCcEEEEEEe-cCCCCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFI-SVFKWKEVILIHE-DNTWGN 190 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l-~~~~w~~v~ii~~-~~~~g~ 190 (860)
+ |..+.+++++++..++|+|++.++++ .+++ ++||+.|++. .++.++++++ +++||++|++|+. +++|+.
T Consensus 90 ~-s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~ 164 (366)
T 3td9_A 90 A-SAHSLAIAPIAEENKVPMVTPASTNP-LVTQGRKFVSRVCFIDP---FQGAAMAVFAYKNLGAKRVVVFTDVEQDYSV 164 (366)
T ss_dssp S-HHHHHHHHHHHHHTTCCEEESSCCCG-GGTTTCSSEEESSCCHH---HHHHHHHHHHHHTSCCCEEEEEEETTCHHHH
T ss_pred C-chhHHHHHHHHHhCCCeEEecCCCCc-cccCCCCCEEEEeCCcH---HHHHHHHHHHHHhcCCcEEEEEEeCCCcHHH
Confidence 9 99999999999999999999998888 7765 9999999999 9999999999 5689999999986 677888
Q ss_pred cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 191 DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 191 ~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
...+.+++.+++.|++++... ++ .+..++...++++++.++++|++.+...++..+++++++.|+. ..|+.+
T Consensus 165 -~~~~~~~~~~~~~G~~v~~~~-~~---~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~ 236 (366)
T 3td9_A 165 -GLSNFFINKFTELGGQVKRVF-FR---SGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFT---GYILAG 236 (366)
T ss_dssp -HHHHHHHHHHHHTTCEEEEEE-EC---TTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCC---SEEEEC
T ss_pred -HHHHHHHHHHHHCCCEEEEEE-eC---CCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCC---ceEEee
Confidence 888999999999999999877 77 5667888999999999999999999999999999999999974 346665
Q ss_pred ChhhhhcccCcchhhcccCceeEEEEeccCC---chhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHH
Q 044527 271 AATMNFLHSMDSLVVESSMQGVVGFRRYVPT---SKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASE 347 (860)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 347 (860)
+.+... . ......+. .+|++....+.++ .|..++|.++|+++++. .|+.+++.+|||++++++|++
T Consensus 237 ~~~~~~-~-~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~~~yda~~~~~~al~ 305 (366)
T 3td9_A 237 DGADAP-E-LIEIGGEA-VEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK--------EPAALNALGYDAYMVLLDAIE 305 (366)
T ss_dssp GGGCST-H-HHHHHGGG-GTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCH-H-HHHHHhHH-hCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC--------CCchhHHHHHHHHHHHHHHHH
Confidence 543221 1 11111233 6677776655544 68899999999999875 357899999999999999999
Q ss_pred hhhcCCCChHHHHHHHHhcc-cccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCC
Q 044527 348 KLKTGQVSDEIFYKQIVNNR-FRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTT 408 (860)
Q Consensus 348 ~~~~~~~~~~~l~~~l~~~~-~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~ 408 (860)
+++..+ ++.+.++|++++ |+|++|+++| ++|++.. .+.|+++++++++.++.|++.+
T Consensus 306 ~ag~~~--~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~~--~~~i~~~~~g~~~~v~~~~~~~ 364 (366)
T 3td9_A 306 RAGSFD--REKIAEEIRKTRNFNGASGIINIDENGDAIK--SVVVNIVKNGSVDFEAVINPDD 364 (366)
T ss_dssp HHTSCC--HHHHHHHHTTCCSEEETTEEECBCTTSCBCC--CEEEEEEETTEEEEEEEECGGG
T ss_pred HhCCCC--HHHHHHHHHhCCCCcccceeeEECCCCCccC--ceEEEEEECCEEEEEEecChhh
Confidence 998744 799999999998 9999999999 8999998 7999999999999999998754
No 21
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=1e-35 Score=324.83 Aligned_cols=341 Identities=11% Similarity=0.115 Sum_probs=290.9
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|++++|++++++++++++++.|+++++..+.+.+++++.+++|.+||||.+
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 4579999999999864 7889999999999999999999999999999999999999999999996669999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCC
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNT 193 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~ 193 (860)
+..+.+++.++...++|+|++.++++ .+++ ++||+.|++. .++.++++++.+.||++|++|+.++.+|. ..
T Consensus 82 -s~~~~~~~~~~~~~~iP~v~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~ 155 (358)
T 3hut_A 82 -STVSMAAGSIYGKEGMPQLSPTAAHP-DYIKISPWQFRAITTPA---FEGPNNAAWMIGDGFTSVAVIGVTTDWGL-SS 155 (358)
T ss_dssp -HHHHHHHHHHHHHHTCCEEESSCCCG-GGTTSCTTEEESSCCGG---GHHHHHHHHHHHTTCCEEEEEEESSHHHH-HH
T ss_pred -cHHHHHHHHHHHHCCCcEEecCCCCc-ccccCCCeEEEecCChH---HHHHHHHHHHHHcCCCEEEEEecCcHHHH-HH
Confidence 99999999999999999999998888 7765 8999999999 99999999998889999999999999999 99
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChh
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAAT 273 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 273 (860)
.+.+++.+++.|++++....++ .+..++...++++++.++++|++.++...+..+++++++.|+. ..|+..+.+
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~---~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~---~p~~~~~~~ 229 (358)
T 3hut_A 156 AQAFRKAFELRGGAVVVNEEVP---PGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSA---LPVYGSSAL 229 (358)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC---TTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCC---CCEEECGGG
T ss_pred HHHHHHHHHHcCCEEEEEEecC---CCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCC---CcEEecCcc
Confidence 9999999999999998877666 5567788899999999999999999999999999999999974 336665543
Q ss_pred hhhcccCcchhhcccCceeEEEEeccC--CchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhc
Q 044527 274 MNFLHSMDSLVVESSMQGVVGFRRYVP--TSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKT 351 (860)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~ 351 (860)
... ... ....+. .+|++...++.+ ++|..++|.++|+++++. .|+.+++.+|||++++++|+++++.
T Consensus 230 ~~~-~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~ag~ 298 (358)
T 3hut_A 230 YSP-KFI-DLGGPA-VEGVRLATAFVLGASDPVVVEFVSAYETLYGA--------IPTLFAAHGYDAVGIMLAAVGRAGP 298 (358)
T ss_dssp CSH-HHH-HHHGGG-GTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCH-HHH-HHhHHh-hCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 221 111 111233 667777766654 468999999999998875 3578999999999999999999987
Q ss_pred CCCChHH-HHHHHHhc-ccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecC
Q 044527 352 GQVSDEI-FYKQIVNN-RFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNP 406 (860)
Q Consensus 352 ~~~~~~~-l~~~l~~~-~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~ 406 (860)
.+ +++ +.++|+++ +|+|++|+++| ++|++... .+.|+++++|+|+.+..+.+
T Consensus 299 ~~--~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~-~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 299 EV--TRESLRDALAATDRYAGVTGITRFDPETRETTK-ILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp TC--CHHHHHHHHHTCCSEEETTEEEEECTTTCCEEE-CCEEEEEETTEEEEC-----
T ss_pred CC--hHHHHHHHHHhcCCCcCCceeeEECCCCCcCCC-ceEEEEEECCEEEEeccccc
Confidence 65 478 99999999 99999999999 99998544 89999999999998877665
No 22
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=8.9e-36 Score=327.30 Aligned_cols=330 Identities=16% Similarity=0.167 Sum_probs=284.8
Q ss_pred CceEEEEEEEecCCcc----hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDMRSWT----GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~----g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
.++|+||+++|++|.. |.....|+++|++++ +++++++++++++.|++++|..+++.+++|+.+++|.+||||.
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~ 79 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGT 79 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECS
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCC
Confidence 4579999999999863 778999999999999 4677889999999999999999999999999967999999999
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGN 190 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~ 190 (860)
+ |..+.++++++...++|+|+++++++ .+++ ++||+.|++. .+++++++++.+++|++|++|+.++.||.
T Consensus 80 ~-s~~~~a~~~~~~~~~ip~i~~~~~~~-~~~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~vaii~~~~~~g~ 154 (375)
T 3i09_A 80 N-SATALSMNQVAAEKKKVYINIGAGAD-TLTNEQCTPYTVHYAYDTM---ALAKGTGSAVVKQGGKTWFFLTADYAFGK 154 (375)
T ss_dssp C-HHHHHHHHHHHHHHTCEEEECSCCCG-GGGTTTCCTTEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred C-cHHHHHHHHHHHHcCceEEEeCCCch-hhhcccCCCcEEEeeCChH---HHHHHHHHHHHHcCCceEEEEecccHHHH
Confidence 9 99999999999999999999988888 7764 8999999998 99999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 191 DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 191 ~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
...+.+++.+++.|++++....++ .+..|+...+.+++++++|+|++.+...++..+++++++.|+..+. .++..
T Consensus 155 -~~~~~~~~~~~~~G~~v~~~~~~~---~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~ 229 (375)
T 3i09_A 155 -ALEKNTADVVKANGGKVLGEVRHP---LSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAAL 229 (375)
T ss_dssp -HHHHHHHHHHHHTTCEEEEEEEEC---TTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEES
T ss_pred -HHHHHHHHHHHHcCCEEeeeeeCC---CCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEec
Confidence 999999999999999999887776 5667899999999999999999999999999999999999987665 34433
Q ss_pred ChhhhhcccCcchhhcccCceeEEEEeccCC-chhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhh
Q 044527 271 AATMNFLHSMDSLVVESSMQGVVGFRRYVPT-SKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKL 349 (860)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~ 349 (860)
+......... ..+. .+|++...++.++ +|..++|.++|+++++. .|+.+++.+|||++++++|++++
T Consensus 230 ~~~~~~~~~~---~~~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~~~~Al~~a 297 (375)
T 3i09_A 230 LMFINDVHAL---GLET-TQGLVLTDSWYWNRDQASRQWAQRYFAKMKK--------MPSSLQAADYSSVTTYLKAVQAA 297 (375)
T ss_dssp SCCHHHHHHH---CHHH-HTTCEEEESCCTTSSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHhhh---Chhh-hCCeeeeeeecCCCCHHHHHHHHHHHHHHCC--------CCcHHHHHHHHHHHHHHHHHHHh
Confidence 3332221111 1123 5667666655443 68899999999999875 35789999999999999999999
Q ss_pred hcCCCChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCc
Q 044527 350 KTGQVSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKT 397 (860)
Q Consensus 350 ~~~~~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~ 397 (860)
+..+ ++++.++|++++|+|++|.++| ++|++.. .+.|+++++++
T Consensus 298 g~~~--~~~l~~aL~~~~~~~~~G~~~f~~~g~~~~--~~~i~~v~~~~ 342 (375)
T 3i09_A 298 GSTD--SDKVMAQLKKMKIDDFYAKGYIRTDGSMIH--DMYLMEVKKPS 342 (375)
T ss_dssp TSCC--HHHHHHHHTTSCEESSSCEEEECTTSBEEC--CEEEEEECCGG
T ss_pred CCCC--HHHHHHHHhCCCccCCCCceEECCCCCeee--eeEEEEEeccc
Confidence 8754 6999999999999999999999 9999987 78899997554
No 23
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=5.4e-36 Score=326.66 Aligned_cols=339 Identities=12% Similarity=0.143 Sum_probs=288.6
Q ss_pred ceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 41 DEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
++|+||+++|++|.. |.....|+++|++++|++++++++++++++.|+++++..+.+.+++|+. ++|.+||||.+
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~-~~v~~iig~~~- 78 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFVA-DGVKFVVGHAN- 78 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHHH-TTCCEEEECSS-
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHH-CCCcEEEcCCC-
Confidence 369999999999864 8889999999999999999998899999999999999999999999999 59999999999
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCccccc----ceEeecCCCchhHHHHHHHHHHH-hhCCCcEEEEEEecCCCCCcC
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTS----YSIQIDQDDEASQSQARGISDFI-SVFKWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~----~~~r~~p~~~~~~~~~~ai~~~l-~~~~w~~v~ii~~~~~~g~~~ 192 (860)
|..+.++++++...++|+|++.++++ .+++ ++||+.|++. .++.++++++ +++||++|++|+.++.||. .
T Consensus 79 s~~~~~~~~~~~~~~ip~v~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~~~-~ 153 (356)
T 3ipc_A 79 SGVSIPASEVYAENGILEITPAATNP-VFTERGLWNTFRTCGRDD---QQGGIAGKYLADHFKDAKVAIIHDKTPYGQ-G 153 (356)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCCG-GGGSSCCTTEEESSCCHH---HHHHHHHHHHHHHCTTCCEEEEECSSHHHH-H
T ss_pred cHHHHHHHHHHHhCCCeEEecCCCCc-HhhcCCCCcEEEecCChH---HHHHHHHHHHHHhcCCCEEEEEeCCChHHH-H
Confidence 99999999999999999999998888 7764 9999999999 9999999966 5679999999999999999 8
Q ss_pred CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 193 TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
..+.+++.+++.|++++....++ .+..++...+++++++++++|++++...++..+++++++.|+. ..|+.++.
T Consensus 154 ~~~~~~~~l~~~g~~v~~~~~~~---~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~ 227 (356)
T 3ipc_A 154 LADETKKAANAAGVTEVMYEGVN---VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLK---AKLVSGDG 227 (356)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECC---TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCC---CEEEECGG
T ss_pred HHHHHHHHHHHcCCEEEEEEeeC---CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCC---CcEEEecc
Confidence 99999999999999998877766 5667888999999999999999999999999999999999974 34666554
Q ss_pred hhhhcccCcchhhcccCceeEEEEeccC-CchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhc
Q 044527 273 TMNFLHSMDSLVVESSMQGVVGFRRYVP-TSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKT 351 (860)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~ 351 (860)
.... +... ..... .+|++...++.+ ..|..++|.++|+++ +. .|+.+++.+|||++++++|+++++.
T Consensus 228 ~~~~-~~~~-~~g~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~--------~p~~~~~~~yda~~~~~~al~~ag~ 295 (356)
T 3ipc_A 228 IVSN-ELAS-IAGDA-VEGTLNTFGPDPTLRPENKELVEKFKAA-GF--------NPEAYTLYSYAAMQAIAGAAKAAGS 295 (356)
T ss_dssp GCSH-HHHH-HHGGG-GTTCEEEESCCGGGCGGGHHHHHHHHHT-TC--------CCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCH-HHHH-HhhHH-hCCEEEEecCCCCCChhHHHHHHHHHHc-CC--------CcchhHHHHHHHHHHHHHHHHHhCC
Confidence 3321 1111 11123 566666555543 468899999999887 43 2456899999999999999999987
Q ss_pred CCCChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeec---CceEEeeeecCC
Q 044527 352 GQVSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIG---KTIKRVGFWNPT 407 (860)
Q Consensus 352 ~~~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~---~~~~~vG~~~~~ 407 (860)
.+ ++.+.++|++.+|+|++|+++| ++|++... .+.|+++++ |+|+.+..|.+.
T Consensus 296 ~~--~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~-~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 VE--PEKVAEALKKGSFPTALGEISFDEKGDPKLP-GYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp CC--HHHHHHHHTTCCBCCTTSSBCBCTTSCBCCC-CCEEEEEEECTTSSEEEEEC----
T ss_pred CC--HHHHHHHHHhCCCCCcceeeEECCCCCccCC-CeEEEEEEECCCCcEEEEeccccc
Confidence 44 7999999999999999999999 99999887 899999994 899999988653
No 24
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=5.1e-36 Score=328.80 Aligned_cols=327 Identities=13% Similarity=0.121 Sum_probs=270.7
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHh-ccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYA-VNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~-~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
.++|+||+++|++|+. |.....|+++|++++|+ .+++++++|+++++|++++|..+++.+++|+.+++|.+||||.
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 3579999999999975 88999999999999998 6888889999999999999999999999999988999999999
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGN 190 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~ 190 (860)
+ |..+.+++++++..++|+|++.++++ .+++ ++||+.|++. .++.+++.++++++| +|++|+++++||.
T Consensus 82 ~-s~~~~a~~~~~~~~~ip~i~~~~~~~-~~~~~~~~~~~fr~~~~~~---~~~~~~~~~~~~~~~-~v~ii~~~~~~g~ 155 (374)
T 3n0x_A 82 S-SAAALADLPVAEENKKILIVEPAVAD-QITGEKWNRYIFRTGRNSS---QDAISNAVAIGKQGV-TIATLAQDYAFGR 155 (374)
T ss_dssp S-HHHHHHHHHHHHHHTCCEEECSCCCG-GGGTTTCCTTEEECSCCHH---HHHHHHHHHHCCTTE-EEEEEEESSHHHH
T ss_pred C-cHHHHHHHHHHHHcCccEEEcCCCch-hhhcCCCCCeEEEccCCch---hHHHHHHHHHhccCC-EEEEEeCCchHHH
Confidence 9 99999999999999999999888777 7764 8999999998 999999988888898 8999999999999
Q ss_pred cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCC-----CeEEEEEeCHHHHHHHHHHHHHcCCccCCe
Q 044527 191 DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLD-----TKVFVVHMTHALASHLFLNAKKLGMMSKGY 265 (860)
Q Consensus 191 ~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~-----~~viil~~~~~~~~~il~~a~~~gl~~~~~ 265 (860)
...+.+++.+++.|++|+....++ .+.+|+..++++|++++ +|+|++...+... .+.++.++++...++
T Consensus 156 -~~~~~~~~~~~~~G~~vv~~~~~~---~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~ 229 (374)
T 3n0x_A 156 -DGVAAFKEALAKTGATLATEEYVP---TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGI 229 (374)
T ss_dssp -HHHHHHHHHHTTTTCEEEEEEEEC---TTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTE
T ss_pred -HHHHHHHHHHHHcCCEEeeeecCC---CCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCC
Confidence 999999999999999999988877 66788999999999988 9999887433221 235566666544455
Q ss_pred EEEecChhhhhcccCcchhhcccCceeEEEEe---ccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHH
Q 044527 266 VWIATAATMNFLHSMDSLVVESSMQGVVGFRR---YVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAV 342 (860)
Q Consensus 266 ~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~l 342 (860)
.+++.+....... .... ..|..+... ..+++|..++|.++|+++|+. .|+.+++.+|||++++
T Consensus 230 ~~~~~~~~~~~~~-----~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~--------~p~~~a~~~Yda~~~l 295 (374)
T 3n0x_A 230 ELSTGGNILPALA-----AYKR-LPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA--------PPDFFTAGGFSAAMAV 295 (374)
T ss_dssp EEEECCCCTTGGG-----GGGG-STTCEEEESCCTTSCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHH
T ss_pred eeeeccccchhhh-----hhhh-hcCccccceeccCCCCCHHHHHHHHHHHHHHCC--------CCChhHHHHHHHHHHH
Confidence 5554433221111 1122 445555443 335678899999999999875 3578999999999999
Q ss_pred HHHHHhhhcCCCChHHHHHHHHhcccccceeeEEe-e-CCeecCCccEEEEEeecC
Q 044527 343 AKASEKLKTGQVSDEIFYKQIVNNRFRGLSGDFQF-V-NGKLTSSREFEIVNVIGK 396 (860)
Q Consensus 343 a~Al~~~~~~~~~~~~l~~~l~~~~~~g~tG~v~F-~-~g~~~~~~~~~i~~~~~~ 396 (860)
++|+++++..+ ++++.++|++++|+|++|+++| + +|+... .+.|++++.+
T Consensus 296 ~~Al~~ag~~~--~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~ 347 (374)
T 3n0x_A 296 VTAVQKAKSTD--TEKLIAAMEGMEFDTPKGKMVFRKEDHQALQ--SMYHFKVKVD 347 (374)
T ss_dssp HHHHHHHTSCC--HHHHHHHHTTCEEEETTEEEEECTTTCBEEC--CEEEEEEECC
T ss_pred HHHHHHhCCCC--HHHHHHHHhcCCccCCCCCEEECcccCcccc--ceEEEEEEeC
Confidence 99999998744 6999999999999999999999 4 566665 8999999853
No 25
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=4.7e-36 Score=325.21 Aligned_cols=317 Identities=16% Similarity=0.236 Sum_probs=243.7
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEec-CCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRD-SQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D-~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
+..+.||++|..+.. +.+++-|+++.|.-. .+.++..++.- +.+||..+.+.+|+++..++|.||||+.+++
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~ 74 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHH--LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTD 74 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC-----------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSC
T ss_pred CCceEEEEEEcccch-----hhhhccccCcccccc--CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCC
Confidence 457999999986653 789999999999543 22566665443 6789999999999999877899988544314
Q ss_pred hHHHH--HHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCc
Q 044527 119 TGAQI--LADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGND 191 (860)
Q Consensus 119 ~~~~~--~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~ 191 (860)
..+.+ ++.+++.++||+|++++++|..+++ +|||+.|+|. .|++++++++++|||++|++|++|+ .
T Consensus 75 ~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~---~q~~ai~~ll~~fgW~~V~iI~~d~-~--- 147 (364)
T 3qel_B 75 QEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIE---QQASVMLNIMEEYDWYIFSIVTTYF-P--- 147 (364)
T ss_dssp CTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESC-T---
T ss_pred chHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChH---HHHHHHHHHHHHCCCeEEEEEEeCC-c---
Confidence 44545 8999999999999999886524664 8999999999 9999999999999999999999985 3
Q ss_pred CCHHHHHHHHhhC--C--ceEeEEEeccCCCCChHHHHHHH-HhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 192 NTIPYLFDSLHDN--D--IDIARRTSISLASSTHDQIIEKL-SMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 192 ~~~~~l~~~~~~~--g--~~i~~~~~~~~~~~~~~~~~~~l-~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
..+.+.+.+++. | +|+.....++ .+.+..++...+ ++++++++++||++|+.+++..++++|.++||+.++|+
T Consensus 148 -g~~~~~~~l~~~~~~~~ici~~~~~i~-~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~ 225 (364)
T 3qel_B 148 -GYQDFVNKIRSTIENSFVGWELEEVLL-LDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYT 225 (364)
T ss_dssp -THHHHHHHHHHHHHTCSSCCEEEEEEE-ECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCE
T ss_pred -cHHHHHHHHHHHhhccccceEEEEEEc-cCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeE
Confidence 334555555554 4 4777766555 334455677788 78999999999999999999999999999999988999
Q ss_pred EEecChhhhhcccCcchhhcccCceeEEEEeccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHH
Q 044527 267 WIATAATMNFLHSMDSLVVESSMQGVVGFRRYVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKAS 346 (860)
Q Consensus 267 ~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al 346 (860)
||+++.+....+.... +. ..|++++.+.. |+ ....+++||||+++|+|+
T Consensus 226 wI~t~~~~~~~~~~~~---~~-~~g~~~~~~~~------------W~---------------~~~~~~~yDaV~~~A~A~ 274 (364)
T 3qel_B 226 WIVPSLVAGDTDTVPS---EF-PTGLISVSYDE------------WD---------------YGLPARVRDGIAIITTAA 274 (364)
T ss_dssp EEECHHHHCSTTCCCT---TS-CTTCEECCBCT------------TT---------------SCHHHHHHHHHHHHHHHH
T ss_pred EEEecccccCcccccc---cC-CCceEEEeecc------------ch---------------hhHHHHHHHHHHHHHHHH
Confidence 9999886544332221 23 67888877654 21 125678999999999999
Q ss_pred HhhhcCC------------------CChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEee-cCceEEeeeecC
Q 044527 347 EKLKTGQ------------------VSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVI-GKTIKRVGFWNP 406 (860)
Q Consensus 347 ~~~~~~~------------------~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~-~~~~~~vG~~~~ 406 (860)
+++.... ..|..|.++|++++|+|+ ++.| ++|++.++ .|+|++++ +++|++||+|++
T Consensus 275 ~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~-~~~Iinl~~~~~~~~VG~W~~ 351 (364)
T 3qel_B 275 SDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHP-KLVIILLNKERKWERVGKWKD 351 (364)
T ss_dssp HHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSC-CEEEEEECTTSCEEEEEEECS
T ss_pred HHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccc-eEEEEEEcCCCCcEEEEEECC
Confidence 9775421 126789999999999997 8899 99999988 99999998 678999999984
No 26
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=8.1e-36 Score=328.05 Aligned_cols=330 Identities=16% Similarity=0.135 Sum_probs=282.1
Q ss_pred CceEEEEEEEecCCcc----hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDMRSWT----GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~----g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
.++|+||+++|++|+. |.....|+++|++++ +++++++++++++.|++++|..+++.+++|+.+++|.+||||.
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~ 81 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVV 81 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 5679999999999863 788999999999999 4667789999999999999999999999999967999999999
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGN 190 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~ 190 (860)
+ |..+.+++++++..++|+|+++++++ .+++ ++||+.|++. .+++++++++.+++|++|++|++++.||+
T Consensus 82 ~-s~~~~a~~~~~~~~~ip~i~~~~~~~-~~~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~vaii~~~~~~g~ 156 (379)
T 3n0w_A 82 N-SGTALAINNLVKDKKKLAFITAAAAD-QIGGTECNGYGIGFLYNFT---SIVKTVVQAQLAKGYKTWFLMLPDAAYGD 156 (379)
T ss_dssp C-HHHHHHHHHHHHHHTCEEEECSCCCT-TTTTTTCCSSEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred C-cHHHHHHHHHHHHcCceEEEcCCCch-hhhcccCCCcEEEEeCChH---HHHHHHHHHHHHcCCcEEEEEecccchhH
Confidence 9 99999999999999999999988888 7764 8999999998 99999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 191 DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 191 ~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
...+.+++.+++.|++++....++ .+..|+...+.+++++++|+|++.+...++..+++++++.|+..+.+ ++.+
T Consensus 157 -~~~~~~~~~~~~~G~~v~~~~~~~---~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~ 231 (379)
T 3n0w_A 157 -LMNAAIRRELTAGGGQIVGSVRFP---FETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGG 231 (379)
T ss_dssp -HHHHHHHHHHHHHTCEEEEEEEEC---TTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEEC
T ss_pred -HHHHHHHHHHHHcCCEEEEEEeCC---CCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEe
Confidence 999999999999999999887776 56678999999999999999999999999999999999999865533 4443
Q ss_pred Chh-hhhcccCcchhhcccCceeEEEEeccCC-chhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHh
Q 044527 271 AAT-MNFLHSMDSLVVESSMQGVVGFRRYVPT-SKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEK 348 (860)
Q Consensus 271 ~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~ 348 (860)
... ....... ..+. .+|++...++.++ +|..++|.++|+++++. .|+.+++.+|||++++++|+++
T Consensus 232 ~~~~~~~~~~~---~~~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~~~Yda~~~~~~Al~~ 299 (379)
T 3n0w_A 232 MIDILTDVKSA---GLRV-MQGQEYATSFYWNMDDRTRAFAKRFYAKMGK--------MPTNNQAGGYSAALQYLKAVNA 299 (379)
T ss_dssp CBCCHHHHHHH---CHHH-HTTCEEEESCCTTSSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhh---CHHh-hCCeEEEeeecCCCCHHHHHHHHHHHHHHCC--------CCChHHHHHHHHHHHHHHHHHH
Confidence 332 2111111 1123 5677666655443 58899999999999875 3578999999999999999999
Q ss_pred hhcCCCChHHHHHHHHhcccccceee-EEe-eCCeecCCccEEEEEeecCc
Q 044527 349 LKTGQVSDEIFYKQIVNNRFRGLSGD-FQF-VNGKLTSSREFEIVNVIGKT 397 (860)
Q Consensus 349 ~~~~~~~~~~l~~~l~~~~~~g~tG~-v~F-~~g~~~~~~~~~i~~~~~~~ 397 (860)
++..+ ++++.++|++++|+|+.|. +.| ++|++.. .+.|+++++++
T Consensus 300 ag~~~--~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~~--~~~i~~~~~~~ 346 (379)
T 3n0w_A 300 IGSKD--PQKVFAYLKTIKFDDAVTRHGTLRPGGRLVR--DMYLVRAKKPE 346 (379)
T ss_dssp HTCCC--HHHHHHHHTTCCBCSSSCCSBEECTTSBEEC--CEEEEEECCGG
T ss_pred hCCCC--HHHHHHHHhcCCccccCCCceeECCCCCccc--ceEEEEEEchh
Confidence 98754 7999999999999999886 899 9999987 79999998654
No 27
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-35 Score=327.23 Aligned_cols=351 Identities=12% Similarity=0.068 Sum_probs=291.4
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|++++|++++++++++++++.|+++++..+.+.+++|+.+++|.+||| .+
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~~ 83 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-YA 83 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-CC
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-CC
Confidence 5689999999999965 7889999999999999999999999999999999999999999999999889999999 68
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccc---c-ceEeecCCCchhHHHHHHHHHHHhh-CCCcEEEEEEecCCCCCc
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLT---S-YSIQIDQDDEASQSQARGISDFISV-FKWKEVILIHEDNTWGND 191 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls---~-~~~r~~p~~~~~~~~~~ai~~~l~~-~~w~~v~ii~~~~~~g~~ 191 (860)
|..+.++++++...++|+|+++++++ ... . ++||+.|++. .++.++++++.+ ++|++|++|+.+++||.
T Consensus 84 -s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~g~- 157 (392)
T 3lkb_A 84 -TGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYS---EQVVALLEYIAREKKGAKVALVVHPSPFGR- 157 (392)
T ss_dssp -HHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHH---HHHHHHHHHHHHHCTTCEEEEEECSSHHHH-
T ss_pred -cHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChH---HHHHHHHHHHHHhCCCCEEEEEEeCCchhh-
Confidence 88899999999999999999876544 332 1 8999999999 999999999876 79999999999999999
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecC
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 271 (860)
...+.+++.+++.|++++....++ .+..++...+.++++.++++|++.+...++..+++++++.|+. ..|+.++
T Consensus 158 ~~~~~~~~~l~~~G~~v~~~~~~~---~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~ 231 (392)
T 3lkb_A 158 APVEDARKAARELGLQIVDVQEVG---SGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLK---MRHLGAH 231 (392)
T ss_dssp TTHHHHHHHHHHHTCEEEEEEECC---TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCC---CEEEECG
T ss_pred hHHHHHHHHHHHcCCeEEEEEeeC---CCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC---ceEEEec
Confidence 999999999999999999877766 5667889999999999999999999999999999999999973 3455554
Q ss_pred hhhhhcccCcchhhcccCceeEEEEeccC--CchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhh
Q 044527 272 ATMNFLHSMDSLVVESSMQGVVGFRRYVP--TSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKL 349 (860)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~ 349 (860)
.... ..... ...+. .+|++...++.+ .++..++|.++|+++|+..+ . .....++..+|||++++++|++++
T Consensus 232 ~~~~-~~~~~-~~g~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p-~---~~~~~~~~~~yda~~~~~~al~~a 304 (392)
T 3lkb_A 232 YTGG-PDLIA-LAGDA-AEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPE-N---FIESVNYTNGMLAAAIAVEAIRRA 304 (392)
T ss_dssp GGCS-HHHHH-HHGGG-GTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCH-H---HHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred Cccc-HHHHH-hhhhh-hcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCc-c---cccchhHHHHHHHHHHHHHHHHHh
Confidence 3321 11111 11233 667777665533 24567899999999887521 0 001234799999999999999999
Q ss_pred hcC--CCChHHHHHHHHhcc----cc-------cceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecCCCCce
Q 044527 350 KTG--QVSDEIFYKQIVNNR----FR-------GLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNPTTGIT 411 (860)
Q Consensus 350 ~~~--~~~~~~l~~~l~~~~----~~-------g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~~~~~~ 411 (860)
+.. ..+++++.++|++++ |+ |++|+++| ++|++... .+.|+++++++|+.++.|.+..++.
T Consensus 305 g~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~-~~~i~~~~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 305 QERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAE-GLRILEAKGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp HHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEEC-CBEEEEEETTEEEECSCCBCCHHHH
T ss_pred hccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcc-cEEEEEEeCCEEEEeccccchhHHH
Confidence 861 123799999999997 98 99999999 78877665 8999999999999999998766544
No 28
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=3.8e-35 Score=322.51 Aligned_cols=339 Identities=12% Similarity=0.135 Sum_probs=291.1
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|++++| +++.++++++++.|+++++..+.+.+++++.+++|.+||||.+
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 91 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVH 91 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSS
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCc
Confidence 4579999999999854 7889999999999998 5566699999999999999999999999998779999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc-----ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCc
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS-----YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGND 191 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-----~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~ 191 (860)
+..+.++++++...++|+|++.++++ .+++ ++||+.|++. .++.++++++.++||++|++|+.++.+|.
T Consensus 92 -s~~~~~~~~~~~~~~iP~v~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~- 165 (375)
T 4evq_A 92 -SGVAMAMVKIAREDGIPTIVPNAGAD-IITRAMCAPNVFRTSFANG---QIGRATGDAMIKAGLKKAVTVTWKYAAGE- 165 (375)
T ss_dssp -HHHHHHHHHHHHHHCCCEEESSCCCG-GGGTTTCCTTEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-
T ss_pred -cHHHHHHHHHHHHcCceEEecCCCCh-hhcccCCCCCEEEeeCChH---hHHHHHHHHHHHcCCcEEEEEecCchHHH-
Confidence 99999999999999999999998887 7664 8999999999 99999999999999999999999999999
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecC
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~ 271 (860)
...+.+++.+++.|++++....++ .+..++...++++++.++++|++.++...+..+++++++.|+. ..|+.++
T Consensus 166 ~~~~~~~~~l~~~G~~v~~~~~~~---~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~---vp~~~~~ 239 (375)
T 4evq_A 166 EMVSGFKKSFTAGKGEVVKDITIA---FPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLG---IPLWGPG 239 (375)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEC---TTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCC---CCEEEEG
T ss_pred HHHHHHHHHHHHcCCeEEEEEecC---CCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCC---ceEEecC
Confidence 899999999999999998877766 5566788899999999999999999999999999999999974 2344443
Q ss_pred hhhhhcccCcchhhcccCceeEEEEeccC--CchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhh
Q 044527 272 ATMNFLHSMDSLVVESSMQGVVGFRRYVP--TSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKL 349 (860)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~ 349 (860)
+. ...... ...+. .+|++...++.+ ++|..++|.++|+++++. .|+.+++.+|||++++++|++++
T Consensus 240 -~~-~~~~~~-~~g~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~~ 307 (375)
T 4evq_A 240 -FL-TDGVEA-AAGPA-GDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI--------PPDVFAVQGWDAGQLLDAGVKAV 307 (375)
T ss_dssp -GG-TTTTHH-HHGGG-GTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred -cC-CHHHHH-hhhhh-cCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC--------CCcHHHHHHHHHHHHHHHHHHHh
Confidence 21 111111 11233 677777766654 458999999999998875 35789999999999999999999
Q ss_pred hcCCCChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeeecC
Q 044527 350 KTGQVSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFWNP 406 (860)
Q Consensus 350 ~~~~~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~~~ 406 (860)
+....+++++.++|++++|+|++|+++| ++|++.. .+.|+++++++|+.++.+-+
T Consensus 308 g~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~--~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 308 GGDVAKRKELNAAMAAASFASPRGPFKLSAAHNPVQ--NFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp TTCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBCC--CEEEEEEETTEEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHhcCCcccCCcceeECCCCCccc--cEEEEEEECCCcEEeeehhh
Confidence 8643447999999999999999999999 8999987 89999999999999998754
No 29
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=6.5e-35 Score=322.18 Aligned_cols=344 Identities=16% Similarity=0.155 Sum_probs=287.1
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCC--ccc--EEEEEEecCCCCHHHHHHHHHHhhccCCeEEEE
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTH--CKT--RLILHSRDSQGDPFHALTTASNLMQNVDLQAII 112 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~--l~~--~l~~~~~D~~~~~~~a~~~~~~li~~~~v~avi 112 (860)
.++|+||+++|++|.. |.....|+++|+++||+++++ +++ +|++++.|+++++..+++.+++|+.+++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 4589999999999964 788999999999999999999 778 999999999999999999999999666999999
Q ss_pred ecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHHhh-CCCcEEEEEEe-cCCCC
Q 044527 113 CIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFISV-FKWKEVILIHE-DNTWG 189 (860)
Q Consensus 113 Gp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l~~-~~w~~v~ii~~-~~~~g 189 (860)
| .+ |..+.++++++...++|+|++.++++ .... ++||+.|++. .++.++++++.+ +||++|++|+. +++||
T Consensus 82 G-~~-s~~~~a~~~~~~~~~iP~i~~~~~~~-~~~~~~~f~~~~~~~---~~~~~~~~~l~~~~g~~~iaii~~~~~~~g 155 (391)
T 3eaf_A 82 G-WG-TADTEKLSDQVDTDKITYISASYSAK-LLVKPFNFYPAPDYS---TQACSGLAFLASEFGQGKLALAYDSKVAYS 155 (391)
T ss_dssp E-CC-HHHHHHHHHHHHHHTCEEEESCCCGG-GTTSTTEECSSCCHH---HHHHHHHHHHHHHHCSEEEEEEECTTCHHH
T ss_pred E-cC-cHHHHHHHHHHhhcCCeEEecccchh-hcCCCcEEEeCCCHH---HHHHHHHHHHHHhcCCCEEEEEEecCChhH
Confidence 9 68 88999999999999999999876554 3323 9999999999 999999999977 69999999999 89999
Q ss_pred CcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHh--hhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEE
Q 044527 190 NDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSM--LKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVW 267 (860)
Q Consensus 190 ~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~--i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~ 267 (860)
. ...+.+++.+++.|++++....++ .+..++...+.+ ++++++++|++.++..++..+++++++.|+.. .+
T Consensus 156 ~-~~~~~~~~~l~~~G~~v~~~~~~~---~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~ 228 (391)
T 3eaf_A 156 R-SPIGAIKKAAPSLGLQVVGDYDLP---LRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDA---FL 228 (391)
T ss_dssp H-TTHHHHHHHTGGGTEEEEEEEECC---TTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCC---EE
T ss_pred H-HHHHHHHHHHHHcCCceeeeeccC---CCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCc---eE
Confidence 9 999999999999999999887776 667799999999 99999999999999999999999999999743 34
Q ss_pred EecChhhhhcccCcchhhcccCce-eEEEEecc-----CCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHH
Q 044527 268 IATAATMNFLHSMDSLVVESSMQG-VVGFRRYV-----PTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWA 341 (860)
Q Consensus 268 i~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~ 341 (860)
+.+++.. ...... ...+. .+| ++...++. .+.|. .+|.++|+++++...| .++.+++.+|||+++
T Consensus 229 ~~~~~~~-~~~~~~-~~g~~-~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p-----~~~~~~~~~yda~~~ 299 (391)
T 3eaf_A 229 LTNVWGF-DERSPQ-LIGEG-GYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSED-----QINLRVVQGFVNVWL 299 (391)
T ss_dssp EECGGGC-STTHHH-HHCGG-GTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGG-----GCCHHHHHHHHHHHH
T ss_pred EEeccCC-CHHHHH-hhhhh-ccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCc-----ccccHHHHHHHHHHH
Confidence 4443321 111111 12233 677 66665554 34565 6799999998873222 124789999999999
Q ss_pred HHHHHHhh---h--cCCCChHHHHHHHHhcccc--ccee-eEEe-eCCeecCCccEEEEEe-ecCceEEeeeecCCC
Q 044527 342 VAKASEKL---K--TGQVSDEIFYKQIVNNRFR--GLSG-DFQF-VNGKLTSSREFEIVNV-IGKTIKRVGFWNPTT 408 (860)
Q Consensus 342 la~Al~~~---~--~~~~~~~~l~~~l~~~~~~--g~tG-~v~F-~~g~~~~~~~~~i~~~-~~~~~~~vG~~~~~~ 408 (860)
+++|++++ + ..+ ++.+.++|++.+|+ |++| +++| +++++... .+.|+++ ++|+|+.++.|....
T Consensus 300 l~~Al~~a~~~g~~~~~--~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~-~~~i~~~~~~G~~~~v~~~~~~~ 373 (391)
T 3eaf_A 300 LIKAIESVTSQDLQERG--GEALKEALEANTFDLGGITADTIDYEPGFHLAYR-KVFIIKLGENGELQLMGKFEAPS 373 (391)
T ss_dssp HHHHHTTSCHHHHHHHT--HHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCC-CEEEEEECTTSSEEEEEEECCCT
T ss_pred HHHHHHHHHhcCCCCCC--HHHHHHHHHhCCCCCCCccccceeeCCCCCCcce-EEEEEEEecCCEEEEeeeecCcc
Confidence 99999999 6 333 68999999998898 9999 9999 66666555 8999999 789999999997644
No 30
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=4.9e-35 Score=317.78 Aligned_cols=334 Identities=16% Similarity=0.198 Sum_probs=281.6
Q ss_pred ceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 41 DEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
++|+||+++|.+|+. |.....|+++|+++||+++++.++++++++.|+++++..+.+.+++++++ +|.+||||.+
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~-~v~~iig~~~- 78 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVND-GIKYVIGHLC- 78 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHT-TCCEEECCSS-
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhC-CCCEEEcCCC-
Confidence 369999999999863 78899999999999999999988999999999999999999999999975 9999999999
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCccccc----ceEeecCCCchhHHHHHHHHHHH-hhCCCcEEEEEEecCCCCCcC
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTS----YSIQIDQDDEASQSQARGISDFI-SVFKWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~----~~~r~~p~~~~~~~~~~ai~~~l-~~~~w~~v~ii~~~~~~g~~~ 192 (860)
+..+.++.+++...++|+|++.++++ .+++ ++||+.|++. .++.++++++ +++||++|++|+.++.++. .
T Consensus 79 s~~~~~~~~~~~~~~ip~v~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~-~ 153 (346)
T 1usg_A 79 SSSTQPASDIYEDEGILMISPGATNP-ELTQRGYQHIMRTAGLDS---SQGPTAAKYILETVKPQRIAIIHDKQQYGE-G 153 (346)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCCCG-GGGSSCCSSEEECSCCGG---GHHHHHHHHHHHTTCCSSEEEEECSSHHHH-H
T ss_pred cHHHHHHHHHHHHCCCeEEeeCCCCh-HHhcCCCCcEEeccCChH---HHHHHHHHHHHHhcCCCeEEEEECCCchHH-H
Confidence 88888889999999999999988877 6653 8999999999 9999999998 5579999999999988998 8
Q ss_pred CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 193 TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
..+.+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..+++++++.|+.. .|+.++.
T Consensus 154 ~~~~~~~~l~~~g~~v~~~~~~~---~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~ 227 (346)
T 1usg_A 154 LARSVQDGLKAANANVVFFDGIT---AGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKT---QFMGPEG 227 (346)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECC---TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGG
T ss_pred HHHHHHHHHHHcCCEEEEEeccC---CCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCC---eEEecCC
Confidence 89999999999999998766665 44556778899999999999999998889999999999999743 3776655
Q ss_pred hhhhcccCcchhhcccCceeEEEEecc-CCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhc
Q 044527 273 TMNFLHSMDSLVVESSMQGVVGFRRYV-PTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKT 351 (860)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~ 351 (860)
+... .... ...+. .+|++...++. .++|..++|.++|+++++. .++.+++.+|||++++++|+++++.
T Consensus 228 ~~~~-~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~~~~~~~~~yda~~~~~~al~~~g~ 296 (346)
T 1usg_A 228 VGNA-SLSN-IAGDA-AEGMLVTMPKRYDQDPANQGIVDALKADKKD--------PSGPYVWITYAAVQSLATALERTGS 296 (346)
T ss_dssp GCCT-THHH-HHGGG-GTTCEEEECCCGGGSGGGHHHHHHHHHTTCC--------CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCcH-HHHH-HhhHh-hCCeEEecCCCCCCCHHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHHHHHHHHHhCC
Confidence 4321 1001 11123 56777665542 3568899999999887653 3567899999999999999999976
Q ss_pred CCCChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEee-cCceEEe
Q 044527 352 GQVSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVI-GKTIKRV 401 (860)
Q Consensus 352 ~~~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~-~~~~~~v 401 (860)
.+ ++++.++|++.+|+|++|+++| ++|++... .|.|++++ +|+++.+
T Consensus 297 ~~--~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~-~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 DE--PLALVKDLKANGANTVIGPLNWDEKGDLKGF-DFGVFQWHADGSSTKA 345 (346)
T ss_dssp CC--HHHHHHHHHHHCEEETTEEECBCTTSSBSSC-CCEEEEECTTSCEEEC
T ss_pred CC--HHHHHHHHHhCCCccceeeeEECCCCCccCC-ceEEEEEecCCEEEec
Confidence 44 6899999999999999999999 99999866 89999998 7777764
No 31
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=1.7e-34 Score=316.35 Aligned_cols=339 Identities=17% Similarity=0.240 Sum_probs=288.2
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|++++|. ++.+++|++++.|+++++..+++.+++++.+++|.+||||.+
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~ 81 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGI 81 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCc
Confidence 5689999999999865 88899999999999984 356699999999999999999999999998779999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCC
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNT 193 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~ 193 (860)
|..+.++++++...++|+|+++++++ .+++ ++||+.|++. .++.++++++.++||++|++|+.++.+|. ..
T Consensus 82 -s~~~~~~~~~~~~~~ip~i~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~g~-~~ 155 (368)
T 4eyg_A 82 -TPAALAAAPLATQAKVPEIVMAAGTS-IITERSPYIVRTSFTLA---QSSIIIGDWAAKNGIKKVATLTSDYAPGN-DA 155 (368)
T ss_dssp -HHHHHHHHHHHHHHTCCEEESSCCCG-GGGGGCTTEEESSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HH
T ss_pred -cHHHHHHHHHHHhCCceEEeccCCCh-hhccCCCCEEEecCChH---HHHHHHHHHHHHcCCCEEEEEecCchHhH-HH
Confidence 99999999999999999999998888 7764 9999999999 99999999999999999999999999998 88
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChh
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAAT 273 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 273 (860)
.+.+++.+++.|++++....++ .+..++...++++++.++++|++.+....+..+++++++.|+..++..|+.++..
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~---~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~ 232 (368)
T 4eyg_A 156 LAFFKERFTAGGGEIVEEIKVP---LANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDV 232 (368)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC---SSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEeCC---CCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcc
Confidence 9999999999999998877766 5667888999999999999999989888999999999999986555777777632
Q ss_pred hh--hcccCcchhhcccCceeEEEEeccC--CchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhh
Q 044527 274 MN--FLHSMDSLVVESSMQGVVGFRRYVP--TSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKL 349 (860)
Q Consensus 274 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~ 349 (860)
.. ..... .+. .+|++...++.+ ++|..++|.++| ++++.. .|..+++.+|||++++++|++++
T Consensus 233 ~~~~~~~~~----g~~-~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-------~p~~~~~~~yda~~~~~~al~~~ 299 (368)
T 4eyg_A 233 MDDDLLNSM----GDA-ALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ-------RPGFMAVGGYDGIHLVFEALKKT 299 (368)
T ss_dssp TCHHHHTTC----CGG-GTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS-------CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHhh----hhh-hCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC-------CCChHHHHHHHHHHHHHHHHHHh
Confidence 21 12111 123 567776666543 468999999999 888543 35789999999999999999999
Q ss_pred hcCCCChHHHHHHHHhcccccceeeEEe--eCCeecCCccEEEEEee--cCceEEe--eeec
Q 044527 350 KTGQVSDEIFYKQIVNNRFRGLSGDFQF--VNGKLTSSREFEIVNVI--GKTIKRV--GFWN 405 (860)
Q Consensus 350 ~~~~~~~~~l~~~l~~~~~~g~tG~v~F--~~g~~~~~~~~~i~~~~--~~~~~~v--G~~~ 405 (860)
+.. .+++++.++|++++|+|++|+++| ++|+... .+.|.+++ +++|+.+ +.|.
T Consensus 300 g~~-~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~~G~~~~v~~~~~~ 358 (368)
T 4eyg_A 300 GGK-ADGDSLIAAMKGMKWESPRGPISIDPETRDIVQ--NIYIRKVEKVDGELYNIEFAKFD 358 (368)
T ss_dssp TTC-CSHHHHHHHHTTCEEEETTEEEEECTTTCCEEE--EEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCC-CCHHHHHHHHHcCCcccCCCCeEECcccCCccc--ceEEEEEEecCCeEEEEEeeccc
Confidence 733 237999999999999999999999 4677766 78899988 7777554 4444
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=6.1e-35 Score=319.22 Aligned_cols=338 Identities=10% Similarity=0.067 Sum_probs=284.6
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
+++|+||+++|++|.. |.....|+++|++++|++++++++++++++.|++++|..+++.+++++.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 5679999999999854 7889999999999999999999999999999999999999999999999779999999999
Q ss_pred ChhHHHHHHH--hhcCCCCcEEecccCCCccccc--ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcC
Q 044527 117 TPTGAQILAD--LGSRAKIPIISLFTTLPNSLTS--YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 117 ~s~~~~~~~~--~~~~~~ip~Is~~a~~~~~ls~--~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~ 192 (860)
|..+.++++ ++...++|+|++.++++ .+++ ++||+.|++. .++.++++++.++||++|++|+.+++||. .
T Consensus 83 -s~~~~~~~~~~~~~~~~iP~v~~~~~~~-~~~~~~~~f~~~~~~~---~~~~~~~~~l~~~g~~~iaii~~~~~~g~-~ 156 (364)
T 3lop_A 83 -TANVEALMREGVLAEARLPLVGPATGAS-SMTTDPLVFPIKASYQ---QEIDKMITALVTIGVTRIGVLYQEDALGK-E 156 (364)
T ss_dssp -HHHHHHHHHTTHHHHHTCCEESCSCCCG-GGGSCTTEECCSCCHH---HHHHHHHHHHHHTTCCCEEEEEETTHHHH-H
T ss_pred -CHHHHhhCchhhHHhcCCcEEEcccCcH-hhccCCcEEEeCCChH---HHHHHHHHHHHHcCCceEEEEEeCchhhH-H
Confidence 999999999 99999999999998888 7764 9999999999 99999999999999999999999999999 8
Q ss_pred CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 193 TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
..+.+++.+++.|++++....++ .+..++...+.+++++++++|++.++...+..+++++++.|+.. .|+..+.
T Consensus 157 ~~~~~~~~~~~~G~~v~~~~~~~---~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~i~~~~ 230 (364)
T 3lop_A 157 AITGVERTLKAHALAITAMASYP---RNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEA---QLLGLSS 230 (364)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEEC---TTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCC---EEEECTT
T ss_pred HHHHHHHHHHHcCCcEEEEEEec---CCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCC---eEEEecc
Confidence 99999999999999998877766 56678899999999999999999999999999999999999743 3565554
Q ss_pred hhhhcccCcchhh-cccCceeEEEEe----ccCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHH
Q 044527 273 TMNFLHSMDSLVV-ESSMQGVVGFRR----YVPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASE 347 (860)
Q Consensus 273 ~~~~~~~~~~~~~-~~~~~g~~~~~~----~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 347 (860)
.... .... ... +. .+|++.... ..++.|..++|.++|+++++... .|+.++..+|||++++++|++
T Consensus 231 ~~~~-~~~~-~~g~~~-~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~------~p~~~a~~~yda~~~~~~al~ 301 (364)
T 3lop_A 231 IDPG-ILQK-VAGLDA-VRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDV------DLSFRAVEGFVAAKVLAEAIR 301 (364)
T ss_dssp SCHH-HHHH-HHCHHH-HTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTC------CCCHHHHHHHHHHHHHHHHHH
T ss_pred CChH-HHHH-HhChhh-cCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCC------CCChHHHHHHHHHHHHHHHHH
Confidence 3221 1111 111 23 456655442 23567899999999999876521 357899999999999999999
Q ss_pred hhhcCCCChHHHHHHHHhc-cccc-ceeeEEe-eCCeecCCccEEEEEeecCceEE
Q 044527 348 KLKTGQVSDEIFYKQIVNN-RFRG-LSGDFQF-VNGKLTSSREFEIVNVIGKTIKR 400 (860)
Q Consensus 348 ~~~~~~~~~~~l~~~l~~~-~~~g-~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~ 400 (860)
+++.. .+++.+.++|+++ +|+| .+|+++| ++++.... ...|.+++++++.+
T Consensus 302 ~ag~~-~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~-~~~i~~~~~~~~~~ 355 (364)
T 3lop_A 302 RAGPK-PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSH-YIELGVVGPNGLVI 355 (364)
T ss_dssp HHCSS-CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCC-CCEEEEECTTSCEE
T ss_pred HhCCC-CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcc-eEEEEEEcCCCccc
Confidence 99733 2379999999999 7999 9999999 77666554 78888888776543
No 33
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=3.1e-32 Score=300.04 Aligned_cols=344 Identities=10% Similarity=0.058 Sum_probs=279.8
Q ss_pred CceEEEEEEEecCCc---chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSW---TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~---~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
+++++||+++|.+|. .|.....|+++|++++|++++++++++++++.|+++++..+.+.+++++.+++|.+|||+.+
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 567999999999875 47889999999999999999999999999999999999999999999997569999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccc-ccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSL-TSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~l-s~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~ 195 (860)
+..+.++.+++...++|+|++.+.+. .- ..++||+.+++. .+++.+++++.+.+|++|++|+.++.++. ...+
T Consensus 85 -s~~~~~~~~~~~~~~iP~v~~~~~~~-~~~~~~~~~v~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~~~ 158 (385)
T 1pea_A 85 -SHTRKAVMPVVERADALLCYPTPYEG-FEYSPNIVYGGPAPN---QNSAPLAAYLIRHYGERVVFIGSDYIYPR-ESNH 158 (385)
T ss_dssp -HHHHHHHHHHHHHTTCEEEECSCCCC-CCCCTTEEECSCCGG---GTHHHHHHHHHTTTCSEEEEEEESSHHHH-HHHH
T ss_pred -hHHHHHHHHHHHhcCceEEECCcccC-ccCCCCEEEecCChH---HhHHHHHHHHHHccCcEEEEEeCCChHHH-HHHH
Confidence 88888888999999999999876532 11 228999999999 99999999999999999999999888888 8889
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhh
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMN 275 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~ 275 (860)
.+++.+++.|++++....++ ...+..++...++++++.++++|++.++...+..+++++++.|+......++..+....
T Consensus 159 ~~~~~l~~~G~~v~~~~~~~-~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~ 237 (385)
T 1pea_A 159 VMRHLYRQHGGTVLEEIYIP-LYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEA 237 (385)
T ss_dssp HHHHHHHHTTCEEEEEEEEC-SSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHH
T ss_pred HHHHHHHHcCCEEEEEEeec-CCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchH
Confidence 99999999999988765555 22377899999999998899999998888899999999999998543344444432221
Q ss_pred hcccCcchhhcccCceeEEEEecc--CCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCC
Q 044527 276 FLHSMDSLVVESSMQGVVGFRRYV--PTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQ 353 (860)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~ 353 (860)
...... .+. .+|++...++. .++|..++|.++|+++|+... .+..+++.+|||++++++|+++++..+
T Consensus 238 ~~~~~~---~~~-~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~------~~~~~~~~~yda~~~~~~Al~~ag~~~ 307 (385)
T 1pea_A 238 EVAKME---SDV-AEGQVVVAPYFSSIDTPASRAFVQACHGFFPENA------TITAWAEAAYWQTLLLGRAAQAAGNWR 307 (385)
T ss_dssp HHTTSC---HHH-HTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTC------CCCHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhcC---chh-hCCeEEecccccccCCHHHHHHHHHHHHHhCCCC------CCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 111111 123 56777766554 356889999999988776421 356799999999999999999998654
Q ss_pred CChHHHHHHHHhcccccceeeEEe-e-CCeecCCccEEEEEe-ecCceEEeeee
Q 044527 354 VSDEIFYKQIVNNRFRGLSGDFQF-V-NGKLTSSREFEIVNV-IGKTIKRVGFW 404 (860)
Q Consensus 354 ~~~~~l~~~l~~~~~~g~tG~v~F-~-~g~~~~~~~~~i~~~-~~~~~~~vG~~ 404 (860)
++.+.++|++++|+|++|.++| + +++... .+.|.++ ++++++.+...
T Consensus 308 --~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~--~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 308 --VEDVQRHLYDIDIDAPQGPVRVERQNNHSRL--SSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp --HHHHHHHHTTCCEEETTEEEEECTTTSCEEB--CCEEEEECTTSCEEEEEEC
T ss_pred --HHHHHHHHhhCcccCCCCCeEEcCCCCcccc--ceEEEEEcCCCcEEEeecC
Confidence 6899999999999999999999 6 445555 7899999 67788877654
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=3e-33 Score=308.73 Aligned_cols=333 Identities=12% Similarity=0.146 Sum_probs=274.0
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|++++| ++++++++.|+++++..+.+.+++++.+++|.+||||.+
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 98 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSL 98 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSS
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCC
Confidence 4579999999999864 7789999999999984 479999999999999999999999999878999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccc---c---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCC
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLT---S---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGN 190 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls---~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~ 190 (860)
|..+.++.+++...++|+|++.++++ .++ . ++||+.|++. .+++++++++.++||++|++|+.++.||.
T Consensus 99 -s~~~~~~~~~~~~~~ip~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~ 173 (386)
T 3sg0_A 99 -TPVSLPLIDIAAEAKTPLMTMAAAAI-LVAPMDERRKWVYKVVPNDD---IMAEAIGKYIAKTGAKKVGYIGFSDAYGE 173 (386)
T ss_dssp -HHHHHHHHHHHHHTTCCEEECCCCGG-GTCSCCTTGGGEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred -chhHHHHHHHHHhcCCeEEEecCCCc-cccccCCCCCcEEecCCCcH---HHHHHHHHHHHhcCCCEEEEEecCchHHH
Confidence 99999999999999999999988777 665 1 8999999999 99999999999999999999999999999
Q ss_pred cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 191 DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 191 ~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
...+.+++.+++.|++++....++ .+..++...+.++++.++++|++.++...+..+++++++.|+.. .++.+
T Consensus 174 -~~~~~~~~~l~~~g~~v~~~~~~~---~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~ 246 (386)
T 3sg0_A 174 -GYYKVLAAAAPKLGFELTTHEVYA---RSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKG---AIYQT 246 (386)
T ss_dssp -HHHHHHHHHHHHHTCEECCCEEEC---TTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCS---EEECC
T ss_pred -HHHHHHHHHHHHcCCEEEEEEeeC---CCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCC---cEEec
Confidence 999999999999999998766666 55678889999999999999999999899999999999999752 34544
Q ss_pred ChhhhhcccCcchhhcccCceeEEEEec------cC-C---chhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHH
Q 044527 271 AATMNFLHSMDSLVVESSMQGVVGFRRY------VP-T---SKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVW 340 (860)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~-~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~ 340 (860)
+..... +... ...+. .+|++....+ .+ . .+..++|.++|+++++.. .|+.++..+|||++
T Consensus 247 ~~~~~~-~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~ 316 (386)
T 3sg0_A 247 HGVATE-EFIK-LGGKD-VEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGA-------APTIFGVHLWDSMT 316 (386)
T ss_dssp GGGCSH-HHHH-HHGGG-GTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTC-------CCCHHHHHHHHHHH
T ss_pred cccCCH-HHHH-hhhhh-cCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCC-------CCChhHHHHHHHHH
Confidence 433211 1111 11223 5666654431 12 2 256899999999988763 24689999999999
Q ss_pred HHHHHHHhhhcCC-----CChHHHHHHHHhc-ccccceeeEEe-eCCee--cCCccEEEEEeecCceEEe
Q 044527 341 AVAKASEKLKTGQ-----VSDEIFYKQIVNN-RFRGLSGDFQF-VNGKL--TSSREFEIVNVIGKTIKRV 401 (860)
Q Consensus 341 ~la~Al~~~~~~~-----~~~~~l~~~l~~~-~~~g~tG~v~F-~~g~~--~~~~~~~i~~~~~~~~~~v 401 (860)
++++|+++++... .+++.+.++|+++ +|+|++|+++| ++++. ... .+.|+++++|+|+.+
T Consensus 317 ~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~-~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 317 LVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDER-SAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGG-GCEEEEEETTEEEEC
T ss_pred HHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCC-ceEEEEEECCEEEec
Confidence 9999999995432 1257899999999 89999999999 65443 222 689999999888764
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.98 E-value=1.2e-31 Score=293.12 Aligned_cols=332 Identities=13% Similarity=0.151 Sum_probs=272.8
Q ss_pred CceEEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
.++|+||+++|++|.. |.....|+++|++++| ++++++++.|+++++..+.+.+++++.+++|.+||||.+
T Consensus 5 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 78 (362)
T 3snr_A 5 TNEITVGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSV 78 (362)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSS
T ss_pred CCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCC
Confidence 5679999999999864 7788999999999984 479999999999999999999999999878999999999
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCC
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNT 193 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~ 193 (860)
+..+.++..++...++|+|++.++ + .... ++||+.|++. .++.++++++.++||++|++|+.++.+|. ..
T Consensus 79 -s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~ia~i~~~~~~~~-~~ 151 (362)
T 3snr_A 79 -TPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIP---IMGKVLYEHMKKNNVKTVGYIGYSDSYGD-LW 151 (362)
T ss_dssp -HHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHH---HHHHHHHHHHHHTTCCEEEEEEESSHHHH-HH
T ss_pred -cHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChH---HHHHHHHHHHHhcCCCEEEEEecCchHHH-HH
Confidence 999999999999999999999876 5 3222 9999999999 99999999999999999999999999999 99
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChh
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAAT 273 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~ 273 (860)
.+.+++.+++.|++++....++ .+..++...+.++++.++++|++.+....+..+++++++.|+.. .++.+.+.
T Consensus 152 ~~~~~~~l~~~g~~v~~~~~~~---~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---p~i~~~g~ 225 (362)
T 3snr_A 152 FNDLKKQGEAMGLKIVGEERFA---RPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNG---LIYQTHGA 225 (362)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEC---TTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCS---EEEECGGG
T ss_pred HHHHHHHHHHcCCEEEEEeecC---CCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---cEEeccCc
Confidence 9999999999999998877766 55677888999999999999999998999999999999999743 23544433
Q ss_pred hhhcccCcchhhcccCceeEEEEec----------cCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHH
Q 044527 274 MNFLHSMDSLVVESSMQGVVGFRRY----------VPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVA 343 (860)
Q Consensus 274 ~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la 343 (860)
... +... ..... .+|++....+ .+..+..++|.++|+++++.+ .|+.+++.+|||+++++
T Consensus 226 ~~~-~~~~-~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~~~~ 295 (362)
T 3snr_A 226 ASM-DFIR-IAGKS-AEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS-------SRSQFAGHSYDAFKVLE 295 (362)
T ss_dssp CSH-HHHH-HHGGG-GTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT-------CCCHHHHHHHHHHHHHH
T ss_pred CcH-HHHH-HhHHH-hCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC-------CCCchhHhHHHHHHHHH
Confidence 211 1111 11123 5666655431 233467899999999988763 24689999999999999
Q ss_pred HHHHhhhcCC-----CChHHHHHHHHhc-ccccceeeEEe-eCCee--cCCccEEEEEeecCceEEe
Q 044527 344 KASEKLKTGQ-----VSDEIFYKQIVNN-RFRGLSGDFQF-VNGKL--TSSREFEIVNVIGKTIKRV 401 (860)
Q Consensus 344 ~Al~~~~~~~-----~~~~~l~~~l~~~-~~~g~tG~v~F-~~g~~--~~~~~~~i~~~~~~~~~~v 401 (860)
+|+++++..+ .+++.+.++|+++ +|+|++|+++| ++++. ... .+.|+++++|+|+.+
T Consensus 296 ~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~-~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 296 RVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDR-SRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGG-GCEEEEEETTEEEEC
T ss_pred HHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCC-CeEEEEEECCEEEEc
Confidence 9999996432 1258899999999 89999999999 65433 223 689999998888754
No 36
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=6.8e-27 Score=250.64 Aligned_cols=311 Identities=11% Similarity=0.044 Sum_probs=236.9
Q ss_pred EEEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 43 VHVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 43 i~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
+|||+++|+||+. |+..+.|+++|++ +.+++++++|++++|..++ .+++.+++|.+||||.+ |+
T Consensus 3 ~kIG~l~PlSG~~a~~G~~~~~g~~lA~~---------g~~i~l~~~D~~~~~~~aa---~~~~~~~~v~~iiGp~~-s~ 69 (327)
T 3ckm_A 3 SQIGLLLPLSGDGQILGTTIQSGFNDAKG---------NSTIPVQVFDTSMNSVQDI---IAQAKQAGIKTLVGPLL-KQ 69 (327)
T ss_dssp CCEEEEECCSSTTHHHHHHHHHHHHHHHT---------TCCSCEEEEETTTSCHHHH---HHHHHHTTCCEEECCCS-HH
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHhCC---------CCCceEEEEeCCCCHHHHH---HHHHHHcCCeEEEEccc-cc
Confidence 6899999999976 8999999999963 2678999999999997663 45566679999999999 87
Q ss_pred HHHHHHHh-hcCCCCcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHH
Q 044527 120 GAQILADL-GSRAKIPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~-~~~~~ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l 197 (860)
.+.+++.. .+...+|+++.+++++ .... ++||+.+++. .+++++++++...+++++++++++++||+ +..+.|
T Consensus 70 ~~~a~~~~~~~~~~v~~~~~~~~~~-~~~~~~~f~~~~~~~---~~~~~~a~~~~~~g~k~~~ii~~~~~yg~-~~~~~f 144 (327)
T 3ckm_A 70 NLDVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSPE---DEAESAANKMWNDGVRNPLVAMPQNDLGQ-RVGNAF 144 (327)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCTT-CCCCTTEEECCCCHH---HHHHHHHHHHHHTTCCSCEEEEESSHHHH-HHHHHH
T ss_pred cchhhHHHHHhccCceEeccCcCcc-cccCCCeEEEecChH---HHHHHHHHHHHhcCCeeEEEEecCChHHH-HHHHHH
Confidence 77776654 4556677766655544 4444 9999999999 99999999999999999999999999999 999999
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhhhc
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMNFL 277 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~~~ 277 (860)
++.+++.|++|+..+.++ ..+.+ ..+.+++.+++|+|++.+.+.++..+++++++.|+ ...++.++......
T Consensus 145 ~~~~~~~Gg~vv~~~~~~---~~~~~--~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~---~~~~~~~~~~~~~~ 216 (327)
T 3ckm_A 145 NVRWQQLAGTDANIRYYN---LPADV--TYFVQENNSNTTALYAVASPTELAEMKGYLTNIVP---NLAIYASSRASASA 216 (327)
T ss_dssp HHHHHHHHSSCCEEEEES---STTHH--HHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCT---TCEEEECGGGCCHH
T ss_pred HHHHHHCCCeEEEEEECC---CCchh--hHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhc---cCCEEeeecccccc
Confidence 999999999999988776 44333 45677889999999999999999999999999985 34455555433221
Q ss_pred ccCcchhhcccCceeEEEE-ec--cCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcCCC
Q 044527 278 HSMDSLVVESSMQGVVGFR-RY--VPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTGQV 354 (860)
Q Consensus 278 ~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~ 354 (860)
.......... ..|+.... ++ .++.+..++|.++|++.++. ..+.+++|||+.+++.+.+..
T Consensus 217 ~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~AlgyDA~~l~~~l~~~~----- 280 (327)
T 3ckm_A 217 TNTNTDFIAQ-MNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL----------MRLYAMGADAWLLINQFNELR----- 280 (327)
T ss_dssp HHTCHHHHHH-TTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH----------HHHHHHHHHHHHHHHTHHHHH-----
T ss_pred chhcchhhhh-cCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC----------CchHHHHHHHHHHHHHHHHhc-----
Confidence 1111111112 34544333 22 45668888898888766643 236788999998776544332
Q ss_pred ChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEeeee
Q 044527 355 SDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVGFW 404 (860)
Q Consensus 355 ~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG~~ 404 (860)
.+...+|+|+||.++| ++|+... .+.+.++++|++++|..-
T Consensus 281 -------~~~~~~f~G~tG~i~fd~~G~~~r--~l~~~~~~~G~~vpv~d~ 322 (327)
T 3ckm_A 281 -------QVPGYRLSGLTGILSADTNCNVER--DMTWYQYQDGAIVPVVDH 322 (327)
T ss_dssp -------HSTTCCEEETTEEEEECTTCBEEE--ECEEEEEETTEEEECC--
T ss_pred -------CCCCCCceeceEEEEECCCCCCcc--ccEEEEEECCEEEEcccc
Confidence 2344579999999999 9998776 789999999999988643
No 37
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.95 E-value=1.2e-26 Score=245.37 Aligned_cols=305 Identities=11% Similarity=0.057 Sum_probs=237.0
Q ss_pred EEEEEEecCCcc---hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 44 HVGIILDMRSWT---GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 44 ~IG~l~~~~~~~---g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
+||+++|+||+. |...+.|+++|. .+.+++++++|+.++| +.+.+.++++ ++|.+||||.+ |+.
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~---------~G~~i~l~~~D~~~~~--a~~~~~~l~~-~~v~~IiGp~~-s~~ 68 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK---------GNSTIPVQVFDTSMNS--VQDIIAQAKQ-AGIKTLVGPLL-KQN 68 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH---------TTCCSCEEEEETTTSC--HHHHHHHHHH-TTCCEEECCCS-HHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc---------cCCCceEEEEECCCCh--HHHHHHHHHH-CCCCEEEeeCC-HHH
Confidence 699999999975 899999999986 2479999999999998 6677778875 59999999999 999
Q ss_pred HHHHHHhh-cCCCCcEEecccCCCccccc---ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHH
Q 044527 121 AQILADLG-SRAKIPIISLFTTLPNSLTS---YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPY 196 (860)
Q Consensus 121 ~~~~~~~~-~~~~ip~Is~~a~~~~~ls~---~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~ 196 (860)
+.+++.++ ...++|+|++.+++. .... |+||+.| . ++++++++++...|.+++++|+++++||+ ...+.
T Consensus 69 ~~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~---~~~~~~a~~a~~~g~k~vail~~~~~yG~-~~~~~ 141 (325)
T 2h4a_A 69 LDVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--E---DEAESAANKMWNDGVRNPLVAMPQNDLGQ-RVGNA 141 (325)
T ss_dssp HHHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--H---HHHHHHHHHHHHTTCCSCEEEEESSHHHH-HHHHH
T ss_pred HHHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--H---HHHHHHHHHHHHcCCCeEEEEEcCCcHHH-HHHHH
Confidence 99999998 778999999887543 3222 6677554 4 56899999998889999999999999999 99999
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEecChhhh-
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIATAATMN- 275 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~~~~~~- 275 (860)
|++.+++.|++|+..+.+. .+ +|+...++++ ..++|+|++.+.+.++..+.++++..+ .....+.++.+..
T Consensus 142 F~~~~~~~Gg~vv~~~~y~---~~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g---~~~pl~~~~~~~~~ 213 (325)
T 2h4a_A 142 FNVRWQQLAGTDANIRYYN---LP-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIV---PNLAIYASSRASAS 213 (325)
T ss_dssp HHHHHHHHHSSCCEEEEES---ST-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTC---TTCEEEECGGGCCH
T ss_pred HHHHHHHcCCCcceeEecC---CH-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcC---CCCCEEEecccccc
Confidence 9999999999999988877 44 6999999998 589999999999999988888887765 3444555555441
Q ss_pred hcccCcchhhcccCceeEEEE-ec--cCCchhHHHHHHHHHHHhhccCCCCCCCCCChhHHHHhhHHHHHHHHHHhhhcC
Q 044527 276 FLHSMDSLVVESSMQGVVGFR-RY--VPTSKELHNFTLRWRREMYLNNPNAEVSELDAYGILAYDTVWAVAKASEKLKTG 352 (860)
Q Consensus 276 ~~~~~~~~~~~~~~~g~~~~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~ 352 (860)
... ........ .+|+.... ++ .++.+..++|.+.|+..+. +..+.+++|||+.++.++ .++
T Consensus 214 s~~-~~~~~~~~-~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~~----------~~rl~AlgyDA~~l~~~l-~~l--- 277 (325)
T 2h4a_A 214 ATN-TNTDFIAQ-MNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQF-NEL--- 277 (325)
T ss_dssp HHH-TCHHHHHH-TTTCEEEECGGGSCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTH-HHH---
T ss_pred CCC-CCchhhhh-cCCcEEEccccccCCCcHHHHHHHhccCCCcc----------hHHHHHHHHHHHHHHHHH-HHH---
Confidence 111 11122233 67776544 33 3455778888876643321 345679999999986554 222
Q ss_pred CCChHHHHHHHHhcccccceeeEEe-eCCeecCCccEEEEEeecCceEEee
Q 044527 353 QVSDEIFYKQIVNNRFRGLSGDFQF-VNGKLTSSREFEIVNVIGKTIKRVG 402 (860)
Q Consensus 353 ~~~~~~l~~~l~~~~~~g~tG~v~F-~~g~~~~~~~~~i~~~~~~~~~~vG 402 (860)
..+.+..|+|+||.++| ++|+... .+.+.++++|+++++-
T Consensus 278 --------~~~~~~~~~G~tG~l~~~~~g~~~R--~l~~~~~~~G~~~~~~ 318 (325)
T 2h4a_A 278 --------RQVPGYRLSGLTGILSADTNCNVER--DMTWYQYQDGAIVPVV 318 (325)
T ss_dssp --------HHSTTCCEEETTEEEEECTTCBEEE--ECEEEEEETTEEEECC
T ss_pred --------hhCCCCeeccCceeEEECCCCeEEE--eechhhccCCeEEEee
Confidence 12344679999999999 9999877 8999999999887764
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.93 E-value=4.8e-26 Score=242.55 Aligned_cols=263 Identities=19% Similarity=0.263 Sum_probs=198.3
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCcc-CCCHHHHHHHHHc
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVA-AGSYSDLIDQVYF 532 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~-~g~~~g~~~~l~~ 532 (860)
+++|||++.. .+||.+........++++++.|+++||++++++++|++++++..+++.+|.... +++|++++.+|.+
T Consensus 12 ~~~l~V~~~~--~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 89 (312)
T 1yae_A 12 NRSLIVTTIL--EEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELID 89 (312)
T ss_dssp SCEEEEEECC--BTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHT
T ss_pred CceEEEEEec--cCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHhC
Confidence 5789999994 599998631100000167899999999999999999988888777777776544 7899999999999
Q ss_pred CcccEEEeceeecccccceeeccccccccceEEEEecCC--CCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCC
Q 044527 533 QKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQ--NNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVND 610 (860)
Q Consensus 533 g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~--~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 610 (860)
|++|++++++++|++|.+.++||.||+..+.+++++++. ..+++.|+.||+..-+ +
T Consensus 90 g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~--------------------t-- 147 (312)
T 1yae_A 90 HKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR--------------------G-- 147 (312)
T ss_dssp TSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-------------------------------------------
T ss_pred CCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc--------------------c--
Confidence 999999988999999999999999999999999999876 6789999999971100 0
Q ss_pred CcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCC---cEEEec
Q 044527 611 EFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMD---NIGSQL 687 (860)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~---~i~~~~ 687 (860)
+ ..+. ..+..++++.++ ++|++.
T Consensus 148 ------------------------------------------------v----~~~~--~~i~~~~dL~g~~~~~vg~v~ 173 (312)
T 1yae_A 148 ------------------------------------------------S----ERME--SPIDSADDLAKQTKIEYGAVE 173 (312)
T ss_dssp -------------------------------------------------------------CCSHHHHHTCSSSEEECBT
T ss_pred ------------------------------------------------c----cccc--CCCCCHHHHhhccCceEEEEe
Confidence 0 0000 012233344666 788876
Q ss_pred CCcHHHhhhcCCCCC-----------cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccC
Q 044527 688 GSVVPGALSNLNFKD-----------SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTN 756 (860)
Q Consensus 688 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 756 (860)
+++...++.....+. .++..+++.++++++|.+|+ |+++.+...+.|++++.| ++++++..+ ...
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~-~l~~~~~~~--~~~ 249 (312)
T 1yae_A 174 DGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNC-NLTQIGGLI--DSK 249 (312)
T ss_dssp TSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCT-TEEEESSCS--SCE
T ss_pred CChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCC-CEEEecccc--ccc
Confidence 666666665433221 24567899999999999999 999999999999998877 799988877 888
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 757 ~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
+++++++|++||++.||++|.+|+++|.++++.+||+.. ..|
T Consensus 250 ~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c 291 (312)
T 1yae_A 250 GYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGC 291 (312)
T ss_dssp EEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCC
Confidence 999999999999999999999999999999999999998 699
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.92 E-value=8.4e-25 Score=226.44 Aligned_cols=238 Identities=18% Similarity=0.264 Sum_probs=197.1
Q ss_pred CCeEEEEecCCCcccceEeeeCC--CCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCcc-CCCHHHHHHHH
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDP--QSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVA-AGSYSDLIDQV 530 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~--~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~-~g~~~g~~~~l 530 (860)
+++|||++. +.+||.+...+. .++ ++++.|+++||++++++++|++++++.+|.+.+|.... +++|++++.+|
T Consensus 3 ~~~l~v~~~--~~~P~~~~~~~~~~~~~--~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 3 NRSLIVTTI--LEEPYVLFKKSDKPLYG--NDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp CCCEEEEEC--CBTTTBEECCCSSCCCG--GGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CcEEEEEEe--cCCCeEEEeecccccCC--CceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 478999999 559999874321 122 57999999999999999999988888888776665433 67999999999
Q ss_pred HcCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCC
Q 044527 531 YFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVND 610 (860)
Q Consensus 531 ~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 610 (860)
.+|++|++++++++|++|.+.++||.||+.....++++++....
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i~------------------------------------ 122 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPID------------------------------------ 122 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCC------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCcccc------------------------------------
Confidence 99999999999999999999999999999999999999875211
Q ss_pred CcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCc---EEEec
Q 044527 611 EFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDN---IGSQL 687 (860)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~---i~~~~ 687 (860)
++.++ .+++ +|+..
T Consensus 123 ------------------------------------------------------------~~~dL---~g~~~~~ig~~~ 139 (259)
T 3g3k_A 123 ------------------------------------------------------------SADDL---AKQTKIEYGAVE 139 (259)
T ss_dssp ------------------------------------------------------------SHHHH---HTCSSSEEEEET
T ss_pred ------------------------------------------------------------CHHHh---ccCCCceEEEec
Confidence 23333 5554 88888
Q ss_pred CCcHHHhhhcCCCCC-----------cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccC
Q 044527 688 GSVVPGALSNLNFKD-----------SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTN 756 (860)
Q Consensus 688 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 756 (860)
++....++.....+. ..+..+++.++++++|.+|+ |+++.+...+.|+.++.| ++.+++..+ ...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~-~l~~~~~~~--~~~ 215 (259)
T 3g3k_A 140 DGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNC-NLTQIGGLI--DSK 215 (259)
T ss_dssp TSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCT-TEEEESSCS--SCE
T ss_pred CcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCc-eEEEecccc--eee
Confidence 887777775533221 13456789999999999999 999999999999988877 899998888 889
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 757 GFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 757 ~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
+++++++|++||++.||++|.+|+++|.+++|.+||+.. ..|
T Consensus 216 ~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c 257 (259)
T 3g3k_A 216 GYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRG-NGC 257 (259)
T ss_dssp EECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC---C
T ss_pred eEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCC-CCC
Confidence 999999999999999999999999999999999999996 678
No 40
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.92 E-value=8.8e-25 Score=230.47 Aligned_cols=242 Identities=18% Similarity=0.265 Sum_probs=195.2
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCC---------------------------C--------CccEeeeeHHHHHHHHH
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSIN---------------------------S--------TLTVEGFCIDVFKAAID 498 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~---------------------------~--------~~~~~G~~~~l~~~la~ 498 (860)
+.+|||++. ..+||++......+|. + .+++.|+++||+++|++
T Consensus 4 ~~~l~v~t~--~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~G~~vdll~~ia~ 81 (294)
T 2rc8_A 4 KLHLRVVTL--IEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAE 81 (294)
T ss_dssp CEEEEEEEC--CBTTTBEEECCCTTSCCTTSEEEECCCCCCHHHHHHHHHHHHSSSCCCCGGGEEEEESHHHHHHHHHHH
T ss_pred CCEEEEEEE--eeCCcEEEecCCCCCcCccCcccccccccccccchhhhhhcccCCCCCCccccCCceEEhHHHHHHHHH
Confidence 578999999 5599999754332110 0 01378999999999999
Q ss_pred hCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEEecCC-CCCcce
Q 044527 499 TLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQ-NNNMWI 577 (860)
Q Consensus 499 ~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~-~~~~~~ 577 (860)
++|++++++.++++.+|. ..+++|++++++|.+|++|++++++++|++|.+.++||.||+..+..++++++. ...
T Consensus 82 ~lg~~~~~~~~~~~~~g~-~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~i~~~~~~~~i~--- 157 (294)
T 2rc8_A 82 DMNFDFDLYIVGDGKYGA-WKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGTELS--- 157 (294)
T ss_dssp HHTEEEEEEECTTCCCCC-EETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEEEEETTSCCCC---
T ss_pred HcCCcEEEEECCCCcccc-cCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceEEEEECCCCCcC---
Confidence 999988887777655443 567899999999999999999999999999999999999999999999999875 210
Q ss_pred ecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHH
Q 044527 578 FLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLI 657 (860)
Q Consensus 578 ~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~li 657 (860)
T Consensus 158 -------------------------------------------------------------------------------- 157 (294)
T 2rc8_A 158 -------------------------------------------------------------------------------- 157 (294)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccccccchhhHh---hhcCCcEEEecCCcHHHhhhcCCCCCc----CccccCCHHHHHHHHhc--CCcEEEEc
Q 044527 658 LSSSYTATLASMLTIQQIK---LASMDNIGSQLGSVVPGALSNLNFKDS----RLKKYNSAEEYANALSM--GSISAIVD 728 (860)
Q Consensus 658 l~~~Yta~L~s~lt~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~--g~~~~~i~ 728 (860)
++.++. ...++++|+..++....++++. .+.. +...+++.++++++|.+ |++|+++.
T Consensus 158 -------------~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~ 223 (294)
T 2rc8_A 158 -------------GIHDPKLHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIM 223 (294)
T ss_dssp -------------STTCHHHHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEE
T ss_pred -------------ChhhhhhcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEe
Confidence 122221 1138899999999988888653 2211 12347899999999999 99999999
Q ss_pred chHHHHHHHhcc--CccceeeccccccccCceEEEeccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 729 EIPYVRAFLSKY--SAHYTTAAAKYTTSTNGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 729 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
+...+.|++++. | ++++++..+ ...+++++++|++|+++.||++|.+|+++|.+++|.+||+.. ..|
T Consensus 224 ~~~~~~~~~~~~~~~-~l~~~~~~~--~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~-~~c 292 (294)
T 2rc8_A 224 DKALLDYEVSIDADC-KLLTVGKPF--AIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYKV-VPC 292 (294)
T ss_dssp EHHHHHHHHHTCSSS-CEEECSCCE--EEEEECCEECTTCTHHHHHHHHHHHHHHTTHHHHHHHHHCCC----
T ss_pred cHHHHHHHHhhCCCC-CEEEcCCcc--cccceEEEecCCCHHHHHHHHHHHHHHhCCCHHHHHHhhcCC-CCC
Confidence 999999998865 6 788888877 788999999999999999999999999999999999999986 778
No 41
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.91 E-value=1.9e-24 Score=227.42 Aligned_cols=237 Identities=19% Similarity=0.274 Sum_probs=185.1
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCC-ccC----CCHHHHHHH
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGR-VAA----GSYSDLIDQ 529 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~-~~~----g~~~g~~~~ 529 (860)
++++|++.. .+|||.+.. . ++++.|+++||+++|++++|++++++.++++++|.. ..| ++|++++++
T Consensus 41 ~~l~vg~~~-~~~P~~~~~--~-----~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~ 112 (292)
T 1pb7_A 41 KVICTGPND-TSPGSPRHT--V-----PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGE 112 (292)
T ss_dssp CEEEEEEC---------CE--E-----EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHH
T ss_pred ceeecccCC-CCCCccccc--c-----ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHH
Confidence 456666655 455555431 1 557899999999999999999888888888777754 234 489999999
Q ss_pred HHcCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccC
Q 044527 530 VYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVN 609 (860)
Q Consensus 530 l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~ 609 (860)
|.+|++|++++++++|++|.+.++||.||+..+..++++++....
T Consensus 113 l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i~----------------------------------- 157 (292)
T 1pb7_A 113 LLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRIT----------------------------------- 157 (292)
T ss_dssp HHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCCC-----------------------------------
T ss_pred HHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCCC-----------------------------------
Confidence 999999999999999999999999999999999999999875210
Q ss_pred CCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhh--hcCCc-EEEe
Q 044527 610 DEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKL--ASMDN-IGSQ 686 (860)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~--~~~~~-i~~~ 686 (860)
++.++.. ..+.. +++.
T Consensus 158 -------------------------------------------------------------~~~dl~~~g~~~~~~~~~~ 176 (292)
T 1pb7_A 158 -------------------------------------------------------------GINDPRLRNPSDKFIYATV 176 (292)
T ss_dssp -------------------------------------------------------------STTCHHHHSCBTTBCEECB
T ss_pred -------------------------------------------------------------CCcCccccCcccceEEEEE
Confidence 0111110 01123 4667
Q ss_pred cCCcHHHhhhcCC-C----CCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCceEEE
Q 044527 687 LGSVVPGALSNLN-F----KDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGFGFV 761 (860)
Q Consensus 687 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 761 (860)
.++....++++.. . +..++..+++.++++++|.+|++|+++.+...+.|+.++.| ++++++..+ ...+++++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~-~l~~~~~~~--~~~~~~ia 253 (292)
T 1pb7_A 177 KQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKC-DLVTTGELF--FRSGFGIG 253 (292)
T ss_dssp TTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCT-TEEECSSCS--EEEEECCE
T ss_pred cCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCC-CEEEcCccc--cCCceEEE
Confidence 7777666664310 0 12256678999999999999999999999999999998888 798888888 88899999
Q ss_pred eccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 762 FQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 762 ~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
++|++||++.||++|.+|+++|.+++|.+||+.. .+|
T Consensus 254 ~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~-~~c 290 (292)
T 1pb7_A 254 MRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRY-QEC 290 (292)
T ss_dssp EETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSS-SCC
T ss_pred EeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCC-CCC
Confidence 9999999999999999999999999999999987 778
No 42
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=5.2e-24 Score=218.05 Aligned_cols=223 Identities=22% Similarity=0.287 Sum_probs=187.8
Q ss_pred CeEEEEecCCCcccceEee-eCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 455 NKLRIGVPVNGLKEFVNVV-WDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~-~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
++||||+.. ++|||.+.. .|. ++++.|+++||++++++++|+ ++++++. +|++++.+|.+|
T Consensus 12 g~L~Vg~~~-~~pP~~~~~~~d~-----~g~~~G~~vdl~~~ia~~lg~--~~~~~~~----------~~~~~~~~l~~g 73 (243)
T 4h5g_A 12 GKLVVATSP-DYAPFEFQSLVDG-----KNQVVGADIDMAQAIADELGV--KLEILSM----------SFDNVLTSLQTG 73 (243)
T ss_dssp TEEEEEECC-CBTTTBEEEEETT-----EEEEESHHHHHHHHHHHHHTS--EEEEEEC----------CGGGHHHHHHTT
T ss_pred CEEEEEECC-CCCCcEeeeccCC-----CCcEEEeHHHHHHHHHHHhCC--ceEEecc----------cHHHHHHHHHcC
Confidence 689999987 799998853 233 778999999999999999997 5566665 799999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++++|++|.+.++||.||+....++++++.+...
T Consensus 74 ~~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~~--------------------------------------- 114 (243)
T 4h5g_A 74 KADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK--------------------------------------- 114 (243)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTTT---------------------------------------
T ss_pred CCCcccccccCChhHccEEEccCccccCccccccccccccc---------------------------------------
Confidence 99999999999999999999999999999999998776311
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
+..+.++.+++|++..|+....
T Consensus 115 ----------------------------------------------------------~~~~~dl~g~~i~v~~g~~~~~ 136 (243)
T 4h5g_A 115 ----------------------------------------------------------YKDLTSLESANIAAQKGTVPES 136 (243)
T ss_dssp ----------------------------------------------------------CCSHHHHHTSEEEEETTSHHHH
T ss_pred ----------------------------------------------------------ccccccCCCCEEEecCCcHHHH
Confidence 2233445899999999999888
Q ss_pred hhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC-ccceee-ccccccccCceEEEeccCCc-chH
Q 044527 694 ALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS-AHYTTA-AAKYTTSTNGFGFVFQKGSP-LVH 770 (860)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~~k~sp-l~~ 770 (860)
++.. ..+..+++.+++..+++++|.+|++|+++.+...+.+++.+.. ..+..+ .... ...+++++++|++| |++
T Consensus 137 ~l~~-~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~k~~~~L~~ 213 (243)
T 4h5g_A 137 MVKE-QLPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMK--DGDANAVALRKNSDDLKE 213 (243)
T ss_dssp HHHH-HCTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCC--SSCCBCCEEESSCHHHHH
T ss_pred HHHH-hcccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcc--cCceEEEEEeCCCHHHHH
Confidence 8865 3566788999999999999999999999999998888777653 122222 2344 55678999999999 999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 771 DISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 771 ~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
.||++|.+|+++|.+++|.+||+..
T Consensus 214 ~~n~aL~~l~~dG~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 214 VVDKVIQKLKDEGTYQSYLEKAASL 238 (243)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 9999999999999999999999875
No 43
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.90 E-value=1.7e-23 Score=219.44 Aligned_cols=245 Identities=22% Similarity=0.351 Sum_probs=189.5
Q ss_pred CCeEEEEecCCCcccceEeeeCC-CCCC------------------C-----CccEeeeeHHHHHHHHHhCCCceeEEEE
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDP-QSIN------------------S-----TLTVEGFCIDVFKAAIDTLTFEVPYEFI 509 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~-~~~~------------------~-----~~~~~G~~~~l~~~la~~l~f~~~~~~~ 509 (860)
+++|||++. ..+||++..... .+++ + .+++.|+++|+++++++++|+++++...
T Consensus 4 ~~~l~v~t~--~~~P~v~~~~~~~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~~~~~~~ 81 (284)
T 2a5s_A 4 DNHLSIVTL--EEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDLYLV 81 (284)
T ss_dssp -CCEEEEEC--CBTTTBEEEECCCC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCEEEEEEE--ccCCeEEeeccCCCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCCEEEEEc
Confidence 467888888 458888765422 1110 0 1268999999999999999998888777
Q ss_pred eecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEEecCCC-CCcceecccCChhHHH
Q 044527 510 PFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQN-NNMWIFLKPLKPNLWL 588 (860)
Q Consensus 510 ~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~-~~~~~~~~pF~~~vW~ 588 (860)
+++.+|. ..+++|++++.+|.+|++|+++++++++++|.+.++||.||+..+..++++++.. .++.
T Consensus 82 ~~~~~g~-~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~------------ 148 (284)
T 2a5s_A 82 TNGKHGK-KVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLS------------ 148 (284)
T ss_dssp CSSSSCC-EETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTT------------
T ss_pred cCCccCc-ccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCccccccc------------
Confidence 7655543 3677999999999999999999999999999999999999999999999998762 1100
Q ss_pred HHHHHHHHHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhcccc
Q 044527 589 TIAALFVLTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLAS 668 (860)
Q Consensus 589 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s 668 (860)
T Consensus 149 -------------------------------------------------------------------------------- 148 (284)
T 2a5s_A 149 -------------------------------------------------------------------------------- 148 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhHhhhc-CCcEEEecCCcHHHhhhcCCCCCc--Ccccc--CCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc--C
Q 044527 669 MLTIQQIKLAS-MDNIGSQLGSVVPGALSNLNFKDS--RLKKY--NSAEEYANALSMGSISAIVDEIPYVRAFLSKY--S 741 (860)
Q Consensus 669 ~lt~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~--~ 741 (860)
-|....+++++ +.++|++.+++....+.+ .++.. +++.+ ++.++++++|.+|++|+++.+...+.|++++. |
T Consensus 149 dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~-~~~~~~~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~ 227 (284)
T 2a5s_A 149 DKKFQRPHDYSPPFRFGTVPNGSTERNIRN-NYPYMHQYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGC 227 (284)
T ss_dssp SHHHHSGGGSSSCCCEECCTTSHHHHHHHT-TCHHHHHHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTS
T ss_pred ccccCChhHcCCCceEEEEeCCchHHHHHH-HHHHHHHHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCC
Confidence 00011111224 678997765555555543 22221 35556 78999999999999999999999999998876 6
Q ss_pred ccceeec--cccccccCceEEEeccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 742 AHYTTAA--AKYTTSTNGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 742 ~~l~~~~--~~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
++.+++ ..+ ...+++++++|+++|++.||++|.+|+++|.+++|.+||+.. .|
T Consensus 228 -~l~~~~~~~~~--~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~--~c 282 (284)
T 2a5s_A 228 -KLVTIGSGYIF--ATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG--IC 282 (284)
T ss_dssp -CEEEEECCCGG--GCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC--CC
T ss_pred -CEEEeCCcccc--ccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc--cC
Confidence 777774 456 778899999999999999999999999999999999999984 78
No 44
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.90 E-value=1.1e-22 Score=211.31 Aligned_cols=238 Identities=21% Similarity=0.324 Sum_probs=185.7
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
|++|||++. +.|||.+...++.+. .+++.|+++|+++++++++|++++++..+.+.+|....+++|++++.+|.+|
T Consensus 2 ~~~l~v~~~--~~pP~~~~~~~~~g~--~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 2 GVVLRVVTV--LEEPFVMVSENVLGK--PKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCEEEEEEC--CBTTTBEEECCSTTC--CCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CeEEEEEEe--ccCCeEEEecCCCCC--cceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 678999999 459999874432121 3689999999999999999998777777766666656678999999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++++|++|.+.++||.||+..+.+++++++....
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~--------------------------------------- 118 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQ--------------------------------------- 118 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCC---------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCCcc---------------------------------------
Confidence 99999988999999999999999999999999998875210
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcE----EEecCC
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNI----GSQLGS 689 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i----~~~~~~ 689 (860)
++.++ . +++ |...++
T Consensus 119 ---------------------------------------------------------~~~dL---~-~~v~v~~g~~~~~ 137 (265)
T 2v3u_A 119 ---------------------------------------------------------SLQDL---S-KQTDIPYGTVLDS 137 (265)
T ss_dssp ---------------------------------------------------------SHHHH---H-TCSSSCEECBTTS
T ss_pred ---------------------------------------------------------chhhh---h-hhhcEEEEEeccH
Confidence 12222 3 233 333333
Q ss_pred cHHHhhhcCCCCC------------------cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc--Cccceeecc
Q 044527 690 VVPGALSNLNFKD------------------SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY--SAHYTTAAA 749 (860)
Q Consensus 690 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~--~~~l~~~~~ 749 (860)
....+++..+... .++..+++.++++++|.+|++ +++.+...+.|+.++. | .+++++.
T Consensus 138 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~~-~l~~~~~ 215 (265)
T 2v3u_A 138 AVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPDC-SFYTVGN 215 (265)
T ss_dssp HHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTTC-CEEEEC-
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCCc-cEEEecc
Confidence 3444443222111 124568899999999999999 8999999999888765 5 6888887
Q ss_pred ccccccCceEEEeccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 750 KYTTSTNGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 750 ~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
.+ ...+++++++|++|+++.||++|.+|+++|.+++|.+||+.....|
T Consensus 216 ~~--~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c 263 (265)
T 2v3u_A 216 TV--ADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQC 263 (265)
T ss_dssp ----CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC-
T ss_pred cc--CCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcC
Confidence 77 7888999999999999999999999999999999999999988888
No 45
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.89 E-value=3.9e-23 Score=211.50 Aligned_cols=223 Identities=16% Similarity=0.183 Sum_probs=182.3
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhC-CCceeEEEEeecCCCCCccCCCHHHHHHHHHc
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTL-TFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYF 532 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l-~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~ 532 (860)
.++||||+.. ++|||.+. |. ++++.|+++||+++++++| |+ ++++++. +|++++.+|.+
T Consensus 8 ~~tl~vg~~~-~~pP~~~~--d~-----~G~~~G~~vdl~~~ia~~l~g~--~~~~~~~----------~~~~~~~~l~~ 67 (243)
T 4gvo_A 8 VQTITVGTGT-QFPNVCFL--DE-----NGKLTGYDVELVKEIDKRLPGY--KFKFKTM----------DFSNLLVSLGA 67 (243)
T ss_dssp CEEEEEEECS-EETTTEEE--CT-----TSCEESHHHHHHHHHHHTCTTE--EEEEEEC----------CGGGHHHHHHT
T ss_pred CCeEEEEECC-CCCCeEEE--CC-----CCcEEEhHHHHHHHHHHhccCC--eEEEEEC----------CHHHHHHHHHC
Confidence 3689999987 69999986 44 6789999999999999998 75 6666665 79999999999
Q ss_pred CcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCc
Q 044527 533 QKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEF 612 (860)
Q Consensus 533 g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 612 (860)
|++|++++++++|++|.+.++||.||+.....+++.+.....
T Consensus 68 g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~-------------------------------------- 109 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNS-------------------------------------- 109 (243)
T ss_dssp TSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCS--------------------------------------
T ss_pred CCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccc--------------------------------------
Confidence 999999999999999999999999988766555554433111
Q ss_pred CCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHH
Q 044527 613 QGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVP 692 (860)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~ 692 (860)
+..++++.+++||+..++...
T Consensus 110 -----------------------------------------------------------~~~~~dL~g~~v~v~~gs~~~ 130 (243)
T 4gvo_A 110 -----------------------------------------------------------INSTKDLAGKRVITSATSNGA 130 (243)
T ss_dssp -----------------------------------------------------------CSSGGGGTTCEEEECTTCHHH
T ss_pred -----------------------------------------------------------cCchHHhcCCeEEEecCchHH
Confidence 223344599999999998877
Q ss_pred HhhhcC----CCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCceEEEeccCCc-
Q 044527 693 GALSNL----NFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGFGFVFQKGSP- 767 (860)
Q Consensus 693 ~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~sp- 767 (860)
.+++.. .........+.+.++++++|.+|++|+++.+...+.|..++....+.++++.+ ...+++++++|++|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~ 208 (243)
T 4gvo_A 131 LVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVL--SNAKVYFMLGKDETK 208 (243)
T ss_dssp HHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEE--ECCEECCEECTTCHH
T ss_pred HHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCC--CCCcEEEEEeCCCHH
Confidence 666431 11111233467788899999999999999999999998887744677888878 88899999999999
Q ss_pred chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 768 LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 768 l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+++.||++|.+|+++|.+++|.+|||+.
T Consensus 209 l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 209 LSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 9999999999999999999999999975
No 46
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.89 E-value=1.7e-22 Score=209.51 Aligned_cols=239 Identities=18% Similarity=0.261 Sum_probs=190.9
Q ss_pred CCeEEEEecCCCcccceEeeeCC--CCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCC-CHHHHHHHH
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDP--QSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAG-SYSDLIDQV 530 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~--~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g-~~~g~~~~l 530 (860)
+++|+|++. ++|||.+...+. ..+ ++++.|+++|+++++++++|++++++..+.+.+|....++ +|++++.+|
T Consensus 3 ~~~l~v~~~--~~pP~~~~~~~~~~~~~--~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 78 (263)
T 1mqi_A 3 NKTVVVTTI--LESPYVMMKKNHEMLEG--NERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGEL 78 (263)
T ss_dssp CCCEEEEEC--CBTTTBEECTTGGGCCG--GGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CeEEEEEEe--cCCCcEEEecCcccccC--CCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHH
Confidence 468999999 679999863220 011 3689999999999999999987776666555566555555 899999999
Q ss_pred HcCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCC
Q 044527 531 YFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVND 610 (860)
Q Consensus 531 ~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 610 (860)
.+|++|++++++++|++|.+.++||.||+..+.+++++++..
T Consensus 79 ~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~-------------------------------------- 120 (263)
T 1mqi_A 79 VYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTP-------------------------------------- 120 (263)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCS--------------------------------------
T ss_pred HcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccc--------------------------------------
Confidence 999999999889999999999999999999999999998752
Q ss_pred CcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCc---EEEec
Q 044527 611 EFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDN---IGSQL 687 (860)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~---i~~~~ 687 (860)
+..++++.+++ +|++.
T Consensus 121 -------------------------------------------------------------i~~~~dL~g~~~~~ig~v~ 139 (263)
T 1mqi_A 121 -------------------------------------------------------------IESAEDLSKQTEIAYGTLD 139 (263)
T ss_dssp -------------------------------------------------------------CCSHHHHHTCSSSEEECBS
T ss_pred -------------------------------------------------------------cCCHHHHhcccCeeEEEEe
Confidence 11222336666 56554
Q ss_pred CCcHHHhhhcCCCC-----------CcCccccCCHHHHHHHH--hcCCcEEEEcchHHHHHHHhcc-Cccceeecccccc
Q 044527 688 GSVVPGALSNLNFK-----------DSRLKKYNSAEEYANAL--SMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTT 753 (860)
Q Consensus 688 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~ 753 (860)
+.+....+.....+ ..++..+++.++++++| .+|+ |+++.+...+.|+.++. + ++.+++..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 215 (263)
T 1mqi_A 140 SGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPC-DTMKVGGNL-- 215 (263)
T ss_dssp SSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTC-CEEEESCCS--
T ss_pred ccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCC-ceEEcCCcc--
Confidence 44444444332221 12467788999999999 9999 89999999999988776 5 677777777
Q ss_pred ccCceEEEeccCCcchHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 754 STNGFGFVFQKGSPLVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 754 ~~~~~~~~~~k~spl~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
...+++++++|++++++.||++|.+|+++|.+++|.+||+....+|
T Consensus 216 ~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C 261 (263)
T 1mqi_A 216 DSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGEC 261 (263)
T ss_dssp CCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSC
T ss_pred cccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCC
Confidence 7888999999999999999999999999999999999999988889
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.88 E-value=8.2e-22 Score=200.12 Aligned_cols=217 Identities=17% Similarity=0.298 Sum_probs=187.5
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. ++|||.+. |+ ++++.|+++|+++++++++|++ +++++. +|.+++.++.+|
T Consensus 4 a~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~~--~~~~~~----------~~~~~~~~l~~g 63 (232)
T 3i6v_A 4 ADTVRMGTEG-AYPPYNFI--ND-----AGEVDGFERELGDELCKRAGLT--CEWVKN----------DWDSIIPNLVSG 63 (232)
T ss_dssp --CEEEEECS-EETTTEEE--CT-----TSCEESHHHHHHHHHHHHHTCC--EEEEEC----------CGGGHHHHHHTT
T ss_pred CCEEEEEECC-CCCCeeEE--CC-----CCCEeeehHHHHHHHHHHcCCc--eEEEEC----------CHHHHHHHHHCC
Confidence 3689999986 68999986 43 6689999999999999999975 455554 799999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..|++|.+.++||.||+.....++++++..
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 102 (232)
T 3i6v_A 64 NYDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSDG----------------------------------------- 102 (232)
T ss_dssp SCSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESSTT-----------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCCh-----------------------------------------
Confidence 999998899999999999999999999999999987641
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
+++++ +||+..|+....
T Consensus 103 --------------------------------------------------------------~dL~g-~igv~~g~~~~~ 119 (232)
T 3i6v_A 103 --------------------------------------------------------------ADLSG-IVAAQTATIQAG 119 (232)
T ss_dssp --------------------------------------------------------------CCTTS-EEEEETTSHHHH
T ss_pred --------------------------------------------------------------HHhCC-CEEEecCchHHH
Confidence 12378 999999999999
Q ss_pred hhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecc-ccccccCceEEEeccCCc-chHH
Q 044527 694 ALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAA-KYTTSTNGFGFVFQKGSP-LVHD 771 (860)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~k~sp-l~~~ 771 (860)
+++.. ..++..+++.++++++|.+|++|+++.+...+.+++++...++.+++. .+ ...+++++++|++| +++.
T Consensus 120 ~l~~~---~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~l~~~ 194 (232)
T 3i6v_A 120 YIAES---GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVP--LGGGVGMGLRESDGELRGK 194 (232)
T ss_dssp HHHHS---SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEE--CSSCEEEEECTTCHHHHHH
T ss_pred HHHhc---CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCC--CCCcEEEEEeCCCHHHHHH
Confidence 98764 457888999999999999999999999999999998887336777775 35 67889999999998 9999
Q ss_pred HHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 772 ISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 772 in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
||++|.+|+++|.++++.+||+.....|
T Consensus 195 ln~~l~~l~~~G~~~~i~~k~~~~~~~~ 222 (232)
T 3i6v_A 195 FDAAITSMKEDGTLNTMIKKWFGEDAAV 222 (232)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHCTTSCC
T ss_pred HHHHHHHHHHCChHHHHHHHHcCCCCCc
Confidence 9999999999999999999999984443
No 48
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.87 E-value=2.8e-21 Score=200.93 Aligned_cols=221 Identities=20% Similarity=0.295 Sum_probs=191.1
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. .++||.+. ++ ++++.|+++|+++.+++++|+ ++++++. +|.+++.++.+|
T Consensus 20 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~--~~~~~~~----------~~~~~~~~l~~g 79 (268)
T 3hv1_A 20 EKKIKIGFDA-TFVPMGYE--EK-----DGSYIGFDIDLANAVFKLYGI--DVEWQAI----------DWDMKETELKNG 79 (268)
T ss_dssp HTEEEEEECT-EETTTEEE--CT-----TSCEECHHHHHHHHHHHTTTC--EEEEEEC----------CGGGHHHHHHHT
T ss_pred CCcEEEEECC-CCCCceEE--CC-----CCCEEEehHHHHHHHHHHhCC--cEEEEEC----------CHHHHHHHHHCC
Confidence 5789999987 68999986 33 668999999999999999997 5555554 689999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+....+++++++..
T Consensus 80 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~----------------------------------------- 118 (268)
T 3hv1_A 80 TIDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSG----------------------------------------- 118 (268)
T ss_dssp SCSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGC-----------------------------------------
T ss_pred CCCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCC-----------------------------------------
Confidence 999998889999999999999999999999999987752
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
+..++++.+++||+..++....
T Consensus 119 ----------------------------------------------------------i~~~~dL~g~~i~v~~g~~~~~ 140 (268)
T 3hv1_A 119 ----------------------------------------------------------IDSVAGMAGKTLGAQAGSSGYD 140 (268)
T ss_dssp ----------------------------------------------------------CCSSGGGTTCCEEEETTCHHHH
T ss_pred ----------------------------------------------------------CCCHHHhCCCEEEEEeCCchHH
Confidence 2223344899999999999887
Q ss_pred hhhcCC------CCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC--ccceeeccccccccCceEEEeccC
Q 044527 694 ALSNLN------FKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS--AHYTTAAAKYTTSTNGFGFVFQKG 765 (860)
Q Consensus 694 ~~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~k~ 765 (860)
++.... .+..+++.+++.++++++|.+|++|+++.+...+.+++++.. ..+++++..+ ...+++++++|+
T Consensus 141 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~k~ 218 (268)
T 3hv1_A 141 AFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGY--EGESFAVGARKV 218 (268)
T ss_dssp HHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSS--CCEEECCEECTT
T ss_pred HHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCC--CCCcEEEEEcCC
Confidence 775422 233577888999999999999999999999999999888763 5788888777 888999999999
Q ss_pred Cc-chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 766 SP-LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 766 sp-l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+| +++.||++|.+|.++|.++++.+||+..
T Consensus 219 ~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 219 DKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 98 9999999999999999999999999987
No 49
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.87 E-value=2.7e-21 Score=198.08 Aligned_cols=226 Identities=21% Similarity=0.412 Sum_probs=193.0
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. +++||.+. |. ++++.|+++|+++.+++++|+ ++++++. +|.+++.++.+|
T Consensus 4 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~--~~~~~~~----------~~~~~~~~l~~g 63 (245)
T 3k4u_A 4 RGELRVGLEP-GYLPFEMK--DK-----KGNVIGFDVDLAREMAKAMGV--KLKLVPT----------SWDGLIPGLVTE 63 (245)
T ss_dssp CSEEEEEECT-TSTTTCEE--ET-----TTEEESHHHHHHHHHHHHHTC--EEEEEEC----------CGGGHHHHHHTT
T ss_pred CCeEEEEECC-CcCCeeEE--CC-----CCCCccchHHHHHHHHHHhCC--eEEEEEc----------cHHHHHHHHhCC
Confidence 3689999996 68999986 33 668999999999999999997 4555554 789999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+.....++++++....
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~--------------------------------------- 104 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKG--------------------------------------- 104 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTTT---------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCcccc---------------------------------------
Confidence 99999888999999999999999999999999999884211
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhc--CCcEEEecCCcH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLAS--MDNIGSQLGSVV 691 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~--~~~i~~~~~~~~ 691 (860)
+..++++. +++||+..++..
T Consensus 105 ----------------------------------------------------------i~~~~dL~~~g~~i~v~~g~~~ 126 (245)
T 3k4u_A 105 ----------------------------------------------------------VKSYKDLDKPELTLVTKFGVSA 126 (245)
T ss_dssp ----------------------------------------------------------CCSGGGGCCSSCEEEEETTSHH
T ss_pred ----------------------------------------------------------cCCHHHhccCCcEEEEeCCcHH
Confidence 22233346 889999999999
Q ss_pred HHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCc-ch
Q 044527 692 PGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSP-LV 769 (860)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~sp-l~ 769 (860)
..++... .+..++..+++.++++++|.+|++|+++.+...+.+++++. ...+.+....+ ...+++++++|++| ++
T Consensus 127 ~~~l~~~-~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~l~ 203 (245)
T 3k4u_A 127 EYAAKRL-FKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSL--TYEPLGWAIKKGDPDFL 203 (245)
T ss_dssp HHHHHHH-CSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCC--SCEEECCEECTTCHHHH
T ss_pred HHHHHhh-CCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCc--ccccEEEEEcCCCHHHH
Confidence 8888752 45568889999999999999999999999999999987766 34677777777 78899999999999 99
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 770 HDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 770 ~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
+.||++|.+|+++|.++++.++|+.....+
T Consensus 204 ~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~ 233 (245)
T 3k4u_A 204 NWLNHFLAQIKHDGSYDELYERWFVDTKWL 233 (245)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHTCCSGG
T ss_pred HHHHHHHHHHHhCcHHHHHHHHhcCccccc
Confidence 999999999999999999999999985444
No 50
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.86 E-value=4.6e-21 Score=196.94 Aligned_cols=221 Identities=24% Similarity=0.424 Sum_probs=191.2
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|+|++.. .++||.+. . +++..|+++|+++.+++++|++++ +++. +|.+++.++.+|
T Consensus 23 ~~~l~v~~~~-~~~P~~~~---~-----~g~~~G~~~dl~~~i~~~~g~~~~--~~~~----------~~~~~~~~l~~g 81 (249)
T 4f3p_A 23 AKELVVGTDT-SFMPFEFK---Q-----GDKYVGFDLDLWAEIAKGAGWTYK--IQPM----------DFAGLIPALQTQ 81 (249)
T ss_dssp -CCEEEEEES-CBTTTBEE---E-----TTEEESHHHHHHHHHHHHHTCCEE--EEEE----------CGGGHHHHHHTT
T ss_pred CceEEEEeCC-CCCCeEEe---c-----CCeEEEEhHHHHHHHHHHcCCceE--EEec----------CHHHHHHHHHCC
Confidence 5789999986 68999985 2 668999999999999999997554 4444 689999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+....+++++++..
T Consensus 82 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 120 (249)
T 4f3p_A 82 NIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNT----------------------------------------- 120 (249)
T ss_dssp SCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCC-----------------------------------------
T ss_pred CCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCC-----------------------------------------
Confidence 999998889999999999999999999999999987762
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
.+..++++++++||+..++....
T Consensus 121 ---------------------------------------------------------~i~~~~dL~g~~i~v~~g~~~~~ 143 (249)
T 4f3p_A 121 ---------------------------------------------------------TIKSIDDLNGKVIAAKTGTATID 143 (249)
T ss_dssp ---------------------------------------------------------SCCSSGGGTTSEEEEETTSHHHH
T ss_pred ---------------------------------------------------------CcCChHHhCCCEEEEeCCChHHH
Confidence 02223344899999999999888
Q ss_pred hhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCcchHHH
Q 044527 694 ALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSPLVHDI 772 (860)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~spl~~~i 772 (860)
++... .+..++..+++.++++++|.+|++|+++.+...+.++.++. ...+.+.+..+ ...+++++++|++|+.+.|
T Consensus 144 ~l~~~-~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~k~~~l~~~l 220 (249)
T 4f3p_A 144 WIKAH-LKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPV--SGDKYGIGFPKGSPLVAKV 220 (249)
T ss_dssp HHHHH-CCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEE--EEEEEEEEEETTCTHHHHH
T ss_pred HHHhc-CCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCC--CCccEEEEEcCCchHHHHH
Confidence 88753 35568888999999999999999999999999999998876 34688888877 8889999999999999999
Q ss_pred HHHHHHHhhcchHHHHHHHHcCCC
Q 044527 773 SRAIARLREEGTLAKIENVWFNTQ 796 (860)
Q Consensus 773 n~~i~~l~e~G~~~~~~~~~~~~~ 796 (860)
|++|.+|+++|.++++.+||+...
T Consensus 221 ~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 221 NAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCCcHHHHHHHHcCCC
Confidence 999999999999999999999873
No 51
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.86 E-value=8.2e-21 Score=193.43 Aligned_cols=225 Identities=17% Similarity=0.281 Sum_probs=184.6
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++|||++.. .++||.+.. |. ++++.|+++|+++.+++++|++ +++++. +|.+++.++.+|+
T Consensus 3 ~~l~v~~~~-~~~P~~~~~-~~-----~g~~~G~~~dl~~~i~~~~g~~--~~~~~~----------~~~~~~~~l~~g~ 63 (237)
T 3kzg_A 3 LNLTIGTSK-FNPPFEVWS-GN-----NSSLYGFDIDLMQEICRRLHAT--CTFEAY----------IFDDLFPALKNRE 63 (237)
T ss_dssp CEEEEEEES-EETTTEECC-CT-----TSCCBSHHHHHHHHHHHHTTCE--EEEEEE----------CGGGHHHHHHTTS
T ss_pred ceEEEEECC-CCCCeEEEe-CC-----CCCEeeehHHHHHHHHHHhCCc--eEEEEc----------CHHHHHHHHhCCC
Confidence 689999995 589999841 23 6688999999999999999974 455554 6899999999999
Q ss_pred ccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCC
Q 044527 535 FDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQG 614 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 614 (860)
+|++++++..+++|.+.+.||.||+....+++++++..
T Consensus 64 ~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------ 101 (237)
T 3kzg_A 64 VDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDSK------------------------------------------ 101 (237)
T ss_dssp SSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCS------------------------------------------
T ss_pred CCEEEEccccChhHhccceeeeeeeecceEEEEECCCC------------------------------------------
Confidence 99998899999999999999999999999999998763
Q ss_pred cccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHHh
Q 044527 615 SRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPGA 694 (860)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~~ 694 (860)
+..++++.+++||+..++.....
T Consensus 102 ---------------------------------------------------------~~~~~dL~g~~i~~~~g~~~~~~ 124 (237)
T 3kzg_A 102 ---------------------------------------------------------ISTFDDLHGKKIGVRKGTPYARQ 124 (237)
T ss_dssp ---------------------------------------------------------CCSGGGGTTCEEEEETTSTHHHH
T ss_pred ---------------------------------------------------------CCCHHHhCCCEEEEecCCHHHHH
Confidence 11223348999999999997777
Q ss_pred hhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC------c-cceeeccccccccCceEEEeccCCc
Q 044527 695 LSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS------A-HYTTAAAKYTTSTNGFGFVFQKGSP 767 (860)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~------~-~l~~~~~~~~~~~~~~~~~~~k~sp 767 (860)
+.. ..+..++..+++.++++++|.+|++|+++.+...+.+++++.. . .+++++..+ ....+++++++|++|
T Consensus 125 ~~~-~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~k~~~ 202 (237)
T 3kzg_A 125 VLS-ENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKI-SIGEGYSIMANPDQF 202 (237)
T ss_dssp HHH-TCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEE-ECTTCBCCEECGGGH
T ss_pred HHH-hCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCcc-ccCccEEEEEcCCCH
Confidence 654 2445678889999999999999999999999999999888743 2 677776532 045678999999988
Q ss_pred -chHHHHHHHHHHhhcchHHHHHHHHcCCCCCC
Q 044527 768 -LVHDISRAIARLREEGTLAKIENVWFNTQQSS 799 (860)
Q Consensus 768 -l~~~in~~i~~l~e~G~~~~~~~~~~~~~~~~ 799 (860)
+++.+|++|.+|+++|.+++|.+||+.....|
T Consensus 203 ~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~ 235 (237)
T 3kzg_A 203 VLIKKINKILLEMEADGTYLRLYSEYFEGHHHH 235 (237)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHhCccccc
Confidence 99999999999999999999999999974433
No 52
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.86 E-value=9.6e-21 Score=193.59 Aligned_cols=217 Identities=22% Similarity=0.340 Sum_probs=188.6
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|+|++.. .++||.+. |. ++++.|+++|+++.+++++|+ ++++++. +|.+++.++.+|
T Consensus 10 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~--~~~~~~~----------~~~~~~~~l~~g 69 (242)
T 3del_B 10 SEKFIVGTNA-TYPPFEFV--DK-----RGEVVGFDIDLAREISNKLGK--TLDVREF----------SFDALILNLKQH 69 (242)
T ss_dssp -CEEEEEECS-CBTTTBEE--CT-----TSCEESHHHHHHHHHHHHHTC--EEEEEEC----------CGGGHHHHHHTT
T ss_pred CCcEEEEeCC-CCCCeeEE--CC-----CCCEEEeeHHHHHHHHHHcCC--ceEEEEc----------CHHHHHHHHhCC
Confidence 4689999976 68999985 44 668999999999999999996 5555554 789999999999
Q ss_pred cccEEEeceeecccccceeecccccc--ccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYT--DMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDE 611 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~--~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 611 (860)
++|++++++..+++|.+.+.| .||+ ....+++++++..
T Consensus 70 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~--------------------------------------- 109 (242)
T 3del_B 70 RIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGEN--------------------------------------- 109 (242)
T ss_dssp SSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESCC---------------------------------------
T ss_pred CcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCCC---------------------------------------
Confidence 999998889999999999999 9999 8999999987742
Q ss_pred cCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcH
Q 044527 612 FQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVV 691 (860)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~ 691 (860)
+..++++++++||+..++..
T Consensus 110 ------------------------------------------------------------i~~~~dL~g~~i~v~~g~~~ 129 (242)
T 3del_B 110 ------------------------------------------------------------KHPLPLTQYRSVAVQTGTYQ 129 (242)
T ss_dssp ------------------------------------------------------------SCCCCGGGSSCEEEETTSHH
T ss_pred ------------------------------------------------------------CCCHHHhCCCEEEEEcCcHH
Confidence 12223448999999999999
Q ss_pred HHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCc----eEEEeccCCc
Q 044527 692 PGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNG----FGFVFQKGSP 767 (860)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~k~sp 767 (860)
..++.. .+..+++.+++.++++++|.+|++|+++.+...+.+++++.. .+++++..+ ...+ ++++++|++|
T Consensus 130 ~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~k~~~ 204 (242)
T 3del_B 130 EAYLQS--LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFP-ALSTATIDL--PEDQWVLGYGIGVASDRP 204 (242)
T ss_dssp HHHHHH--STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCT-TEEEEEEEC--CGGGCEEEEEEEEETTCH
T ss_pred HHHHHh--CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCC-CeEEecCcc--CcccccceEEEEEeCCCH
Confidence 988876 456688889999999999999999999999999999988776 478877666 6666 9999999998
Q ss_pred -chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 768 -LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 768 -l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+++.||++|.+|+++|.++++.+||+..
T Consensus 205 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 233 (242)
T 3del_B 205 ALALKIEAAVQEIRKEGVLAELEQKWGLN 233 (242)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHCCC
Confidence 9999999999999999999999999997
No 53
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.85 E-value=1.7e-20 Score=189.55 Aligned_cols=220 Identities=24% Similarity=0.387 Sum_probs=182.7
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++|||++.. .+|||.+. ++ ++++.|+++|+++.+++++|++ +++++. +|.+++.++.+|+
T Consensus 2 ~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~~--~~~~~~----------~~~~~~~~l~~g~ 61 (227)
T 3tql_A 2 DTIKFATEA-TYPPYVYM--GP-----SGQVEGFGADIVKAVCKQMQAV--CTISNQ----------PWDSLIPSLKLGK 61 (227)
T ss_dssp CEEEEEECS-CBTTTBEE--C-------CCEESHHHHHHHHHHHHTTCE--EEEEEC----------CHHHHHHHHHHTS
T ss_pred ceEEEEEcC-CCCCeeEE--CC-----CCCcccchHHHHHHHHHHhCCe--EEEEeC----------CHHHHHHHHhCCC
Confidence 579999986 58999986 33 6689999999999999999975 455554 7999999999999
Q ss_pred ccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCC
Q 044527 535 FDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQG 614 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 614 (860)
+|++++++..+++|.+.+.||.||+....+++++++...
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~----------------------------------------- 100 (227)
T 3tql_A 62 FDALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL----------------------------------------- 100 (227)
T ss_dssp CSEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC-----------------------------------------
T ss_pred CCEEEecCcCCHhHHhheecccceeccceEEEEeCCCCC-----------------------------------------
Confidence 999988899999999999999999999999999988631
Q ss_pred cccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHHh
Q 044527 615 SRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPGA 694 (860)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~~ 694 (860)
...++++++++||+..++....+
T Consensus 101 ---------------------------------------------------------~~~~~dL~g~~v~~~~g~~~~~~ 123 (227)
T 3tql_A 101 ---------------------------------------------------------TLSKQGLKGKIIGVQGGTTFDSY 123 (227)
T ss_dssp ---------------------------------------------------------CCSTTTTTTCEEEEETTSHHHHH
T ss_pred ---------------------------------------------------------CCCHHHhCCCEEEEEecccHHHH
Confidence 01223448999999999998888
Q ss_pred hhcCCCCC-cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC-ccceeecccccc---ccCceEEEeccCCc-c
Q 044527 695 LSNLNFKD-SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS-AHYTTAAAKYTT---STNGFGFVFQKGSP-L 768 (860)
Q Consensus 695 ~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~-~~l~~~~~~~~~---~~~~~~~~~~k~sp-l 768 (860)
+.... +. .++..+++.++++++|.+|++|+++.+...+.+++++.. ..+.+++..+.. ...+++++++|++| +
T Consensus 124 l~~~~-~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (227)
T 3tql_A 124 LQDSF-GNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQAL 202 (227)
T ss_dssp HHHHH-GGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHH
T ss_pred HHHhc-cccceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHH
Confidence 86532 23 578889999999999999999999999999999888763 247776554400 22356999999999 9
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHc
Q 044527 769 VHDISRAIARLREEGTLAKIENVWF 793 (860)
Q Consensus 769 ~~~in~~i~~l~e~G~~~~~~~~~~ 793 (860)
.+.||++|.+|+++|.++++.+||+
T Consensus 203 ~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 203 LLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCChHHHHHHhhC
Confidence 9999999999999999999999996
No 54
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.85 E-value=6.3e-21 Score=194.53 Aligned_cols=220 Identities=14% Similarity=0.180 Sum_probs=185.0
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. +++||.+. ++ ++++.|+++|+++++++++|+ ++++++. +|.+++.++.+|
T Consensus 14 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~--~~~~~~~----------~~~~~~~~l~~g 73 (239)
T 3kbr_A 14 SGVLRVATTG-DYKPFSYR--TE-----EGGYAGFDVDMAQRLAESLGA--KLVVVPT----------SWPNLMRDFADD 73 (239)
T ss_dssp HTEEEEEECS-EETTTEEE--CT-----TSCEESHHHHHHHHHHHHTTC--EEEEEEC----------CTTTHHHHHHTT
T ss_pred CCeEEEEECC-CCCCeeEE--CC-----CCCEEeehHHHHHHHHHHHCC--ceEEEEe----------CHHHHHHHHHCC
Confidence 4789999985 68999986 43 668999999999999999997 5555554 789999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+.....+++++++..
T Consensus 74 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~---------------------------------------- 113 (239)
T 3kbr_A 74 RFDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEA---------------------------------------- 113 (239)
T ss_dssp CCSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGG----------------------------------------
T ss_pred CcCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCccc----------------------------------------
Confidence 9999988999999999999999999999999999887521
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhc--CCcEEEecCCcH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLAS--MDNIGSQLGSVV 691 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~--~~~i~~~~~~~~ 691 (860)
.+..++++. +++||+..++..
T Consensus 114 ---------------------------------------------------------~i~~~~dL~~~g~~v~~~~g~~~ 136 (239)
T 3kbr_A 114 ---------------------------------------------------------RFQTLEQIDQPGVTAIVNPGGTN 136 (239)
T ss_dssp ---------------------------------------------------------GGSSHHHHSSTTCEEEECTTSHH
T ss_pred ---------------------------------------------------------ccCCHHHhcCCCcEEEEcCCCcH
Confidence 122333446 789999999998
Q ss_pred HHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeec--cccccccCceEEEeccCCc-c
Q 044527 692 PGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAA--AKYTTSTNGFGFVFQKGSP-L 768 (860)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~k~sp-l 768 (860)
..+++. ..+..++..+++..+++++|.+|++|+++.+...+.++.++.. .+.++. ..+ ...+++++++| ++ +
T Consensus 137 ~~~l~~-~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~k-~~~l 211 (239)
T 3kbr_A 137 EKFARA-NLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHP-ELCAVHPQQPF--DFAEKAYLLPR-DEAF 211 (239)
T ss_dssp HHHHHH-HCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCT-TEEECCCC-CC--CCEEECCEECS-CHHH
T ss_pred HHHHHH-hCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCC-CcEEecCCCCc--cccceEEEEcC-CHHH
Confidence 888875 3456688889999999999999999999999999999988764 455544 346 67889999999 77 9
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 769 VHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 769 ~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
++.+|++|.+|+++|.++++.++|+..
T Consensus 212 ~~~ln~~l~~l~~~g~~~~i~~k~~~~ 238 (239)
T 3kbr_A 212 KRYVDQWLHIAEQSGLLRQRMEHWLEY 238 (239)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHhcc
Confidence 999999999999999999999999964
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.85 E-value=2.4e-20 Score=189.26 Aligned_cols=221 Identities=19% Similarity=0.306 Sum_probs=184.4
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++|+|++. +++||.+...+. ++++.|+++|+++.+++++|++++ ++.. ++|.+++.++.+|+
T Consensus 4 ~~l~v~~~--~~~P~~~~~~~~-----~g~~~G~~~dl~~~i~~~~g~~~~--~~~~---------~~~~~~~~~l~~g~ 65 (233)
T 1ii5_A 4 MALKVGVV--GNPPFVFYGEGK-----NAAFTGISLDVWRAVAESQKWNSE--YVRQ---------NSISAGITAVAEGE 65 (233)
T ss_dssp CCEEEEEC--CCTTTCEEC----------CEESHHHHHHHHHHHHHTCCEE--EEEC---------SCHHHHHHHHHTTS
T ss_pred ceEEEEec--CCCCeEEEecCC-----CCCEEEEeHHHHHHHHHHcCCcEE--EEEe---------CCHHHHHHHHHCCC
Confidence 57999998 689999852122 668999999999999999997554 4443 27999999999999
Q ss_pred ccEEEeceeeccccc--ceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCc
Q 044527 535 FDAAVGDTTITANRS--VYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEF 612 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~--~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 612 (860)
+|++++++..+++|. +.+.||.||+....+++++++....
T Consensus 66 ~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~~-------------------------------------- 107 (233)
T 1ii5_A 66 LDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPL-------------------------------------- 107 (233)
T ss_dssp CSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTTT--------------------------------------
T ss_pred cCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCCC--------------------------------------
Confidence 999988888999998 9999999999999999998775211
Q ss_pred CCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHH
Q 044527 613 QGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVP 692 (860)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~ 692 (860)
+..++++.++++++..++...
T Consensus 108 -----------------------------------------------------------i~~~~dL~g~~v~~~~g~~~~ 128 (233)
T 1ii5_A 108 -----------------------------------------------------------FRSVGDLKNKEVAVVRDTTAV 128 (233)
T ss_dssp -----------------------------------------------------------CSSGGGGTTCEEEEETTSHHH
T ss_pred -----------------------------------------------------------CCCHHHhCCCeEEEECCccHH
Confidence 223334589999999999988
Q ss_pred HhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCcchHH
Q 044527 693 GALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSPLVHD 771 (860)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~spl~~~ 771 (860)
.+++.. ..++..+++..+++++|.+|++|+++.+...+.+++++. ...+++++..+ ...+++++++|++|+.+.
T Consensus 129 ~~l~~~---~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~l~~~ 203 (233)
T 1ii5_A 129 DWANFY---QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRV--SLEPYGFVLKENSPLQKT 203 (233)
T ss_dssp HHHHHT---TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCS--EEEEEEEEEETTCTTHHH
T ss_pred HHHHHc---CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccc--cccceEEEEcCCchHHHH
Confidence 888764 346778899999999999999999999999999988776 33677777766 777899999999999999
Q ss_pred HHHHHHHHhhcchHHHHHHHHcCC
Q 044527 772 ISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 772 in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+|++|.+|+++|.++++.+||+..
T Consensus 204 ~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 204 INVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCcHHHHHHHHcCC
Confidence 999999999999999999999976
No 56
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.84 E-value=2.1e-20 Score=194.12 Aligned_cols=221 Identities=14% Similarity=0.226 Sum_probs=185.7
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. .++||.+. |. ++++.|+++|+++.+++++|++ +++++. .+|.+++.++.+|
T Consensus 31 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~lg~~--~~~~~~---------~~~~~~~~~l~~G 91 (267)
T 3mpk_A 31 HPVVKVAVLN-LFAPFTLF--RT-----DEQFGGISAAVLQLLQLRTGLD--FEIIGV---------DTVEELIAKLRSG 91 (267)
T ss_dssp CSEEEEEEET-EETTTEEC--CT-----TCCCBSHHHHHHHHHHHHHCCE--EEEEEE---------SSHHHHHHHHHHT
T ss_pred CCcEEEEeCC-CCCCeEEE--CC-----CCcEeeeHHHHHHHHHHHHCCe--EEEEec---------CCHHHHHHHHHCC
Confidence 6799999985 58999985 33 6689999999999999999975 455543 2799999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|+++ ++..+++|.+.+.||.||+....+++++++..
T Consensus 92 ~~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~----------------------------------------- 129 (267)
T 3mpk_A 92 EADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPD----------------------------------------- 129 (267)
T ss_dssp SCSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTT-----------------------------------------
T ss_pred CccEEe-cccCChhhhcceEechhhccCceEEEEECCCC-----------------------------------------
Confidence 999975 88999999999999999999999999998752
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
.+..++++++++||+..++....
T Consensus 130 ---------------------------------------------------------~i~~~~dL~g~~i~v~~g~~~~~ 152 (267)
T 3mpk_A 130 ---------------------------------------------------------APVDADHLDGRTVALVRNSAAIP 152 (267)
T ss_dssp ---------------------------------------------------------SCSSGGGCTTCEEEEETTCTHHH
T ss_pred ---------------------------------------------------------CCCCHHHHCCCEEEEeCCchhHH
Confidence 02233345899999999999988
Q ss_pred hhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCc-chHH
Q 044527 694 ALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSP-LVHD 771 (860)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~sp-l~~~ 771 (860)
++++ ..+..+++.+++.++++++|.+|++|+++.+...+.|++++. .+.+++..... ....+++++++|++| +.+.
T Consensus 153 ~l~~-~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~k~~~~l~~~ 230 (267)
T 3mpk_A 153 LLQR-RYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALD-LPPAEIALATTRGQTELMSI 230 (267)
T ss_dssp HHHH-HCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECS-SCCEEEEEEEETTCHHHHHH
T ss_pred HHHH-hCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccC-CCceeEEEEEcCCCHHHHHH
Confidence 8875 345668889999999999999999999999999999988874 44677776532 036789999999999 9999
Q ss_pred HHHHHHHHhhcchHHHHHHHHcCC
Q 044527 772 ISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 772 in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
||++|.+|.++| ++++.+||+..
T Consensus 231 ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 231 LNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHHHHHTSCHHH-HHHHHHTTC--
T ss_pred HHHHHHhCCHHH-HHHHHHhhccC
Confidence 999999999997 99999999986
No 57
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.84 E-value=4e-20 Score=187.79 Aligned_cols=220 Identities=14% Similarity=0.206 Sum_probs=189.0
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|+|++.. +++||.+. |. ++++.|+++|+++.+++++|++++++ +. +|..++.++.+|
T Consensus 10 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~~~~~~--~~----------~~~~~~~~l~~g 69 (234)
T 3h7m_A 10 HRTIVVGGDR-DYPPYEFI--DQ-----NGKPAGYNVELTRAIAEVMGMTVEFR--LG----------AWSEMFSALKSG 69 (234)
T ss_dssp SSCEEEEEET-EETTTEEE--CT-----TSCEESHHHHHHHHHHHHHTCCEEEE--EE----------CGGGHHHHHHTT
T ss_pred CCEEEEEecC-CCCCeEEE--CC-----CCCEeeeEHHHHHHHHHHcCCceEEE--eC----------CHHHHHHHHhCC
Confidence 4689999965 68999985 33 66899999999999999999865554 44 789999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++ .++..+++|.+.+.||.|++....++++++... .
T Consensus 70 ~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~--------------------------------------- 108 (234)
T 3h7m_A 70 RVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP-P--------------------------------------- 108 (234)
T ss_dssp SSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSC-C---------------------------------------
T ss_pred CeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCC-C---------------------------------------
Confidence 99995 678899999999999999999999999988763 0
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
+..+++++++++++..++....
T Consensus 109 ----------------------------------------------------------~~~~~dL~g~~i~~~~g~~~~~ 130 (234)
T 3h7m_A 109 ----------------------------------------------------------AAGLEDLRGRKVALHRDGIMHE 130 (234)
T ss_dssp ----------------------------------------------------------CSSGGGGTTSCEEEETTSHHHH
T ss_pred ----------------------------------------------------------CCCHHHhCCCEEEEEeCchHHH
Confidence 2233344899999999999888
Q ss_pred hhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCc-chHH
Q 044527 694 ALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSP-LVHD 771 (860)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~sp-l~~~ 771 (860)
++.+. .+..++..+++.++++++|.+|++|+++.+...+.+++++. ...+.+....+ ...+++++++|++| +++.
T Consensus 131 ~l~~~-~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 207 (234)
T 3h7m_A 131 YLAER-GYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSI--AAQRYGYAVRQGDAELLAR 207 (234)
T ss_dssp HHHTT-TCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEE--EEEEEEEEEETTCHHHHHH
T ss_pred HHHhc-CCCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEecccc--CCCceEEEEeCCCHHHHHH
Confidence 88763 34457888999999999999999999999999999988876 44688887777 78889999999998 9999
Q ss_pred HHHHHHHHhhcchHHHHHHHHcCC
Q 044527 772 ISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 772 in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
||++|.+|.++|.++++.+||+..
T Consensus 208 l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 208 FSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp HHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred HHHHHHHHHHcCcHHHHHHHhccc
Confidence 999999999999999999999975
No 58
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.83 E-value=7.1e-20 Score=189.24 Aligned_cols=221 Identities=17% Similarity=0.267 Sum_probs=187.5
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|+|++.. .++||.+. +. ++++.|+++|+++.+++++|+ ++++++. +|++++.++.+|
T Consensus 28 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~--~~~~~~~----------~~~~~~~~l~~g 87 (259)
T 4dz1_A 28 GRTLNVAVSP-ASPPMLFK--SA-----DGKLQGIDLELFSSYCQSRHC--KLNITEY----------AWDGMLGAVASG 87 (259)
T ss_dssp TCEEEEEECC-CBTTTBEE--CT-----TCCEESHHHHHHHHHHHHHTC--EEEEEEC----------CHHHHHHHHHHT
T ss_pred CCeEEEEECC-CCCCeEEE--CC-----CCCEEEeHHHHHHHHHHHhCC--eEEEEEc----------CHHHHHHHHhCC
Confidence 4789999986 68999986 33 668999999999999999997 5555654 799999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|+++++++.+++|.+.++||.||+.....++++++....
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~~--------------------------------------- 128 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKIT--------------------------------------- 128 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCCC---------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCCC---------------------------------------
Confidence 99999889999999999999999999999999998765211
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
+..++++++++||+..|+....
T Consensus 129 ----------------------------------------------------------i~~~~dL~g~~v~v~~g~~~~~ 150 (259)
T 4dz1_A 129 ----------------------------------------------------------LNNLNELNKYSIGYPRGMAYSD 150 (259)
T ss_dssp ----------------------------------------------------------CCSGGGGGGSCEEEETTSTHHH
T ss_pred ----------------------------------------------------------CCCHHHhCCCEEEEeCCcHHHH
Confidence 2334445899999999999888
Q ss_pred hhhcCCCCC------cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCceEEEeccCCc
Q 044527 694 ALSNLNFKD------SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGFGFVFQKGSP 767 (860)
Q Consensus 694 ~~~~~~~~~------~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~sp 767 (860)
+++.. .+. .++..+++.++++++|.+|++|+++.+...+.++.++....+....... ...+++++++|+++
T Consensus 151 ~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~ 227 (259)
T 4dz1_A 151 LIKND-LEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFK--NVDQLGIAFKKGSP 227 (259)
T ss_dssp HHHHH-TGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEE--EEEEEEEEEETTCH
T ss_pred HHHHh-cccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccC--CCceEEEEEeCChH
Confidence 87652 222 5778889999999999999999999999998888776643666666666 67889999999999
Q ss_pred chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 768 LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 768 l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+++.||++|.+ ..++.++++.++|...
T Consensus 228 l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 228 VRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 99999999999 8999999999999987
No 59
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.83 E-value=9.5e-20 Score=183.85 Aligned_cols=219 Identities=21% Similarity=0.372 Sum_probs=185.3
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++|+|++.. +++||.+.. ++++.|+++|+++.+++++|++++ +.+. +|.+++.++.+|+
T Consensus 3 ~~l~v~~~~-~~~P~~~~~--------~g~~~G~~~dl~~~~~~~~g~~~~--~~~~----------~~~~~~~~l~~g~ 61 (226)
T 1wdn_A 3 KKLVVATDT-AFVPFEFKQ--------GDLYVGFDVDLWAAIAKELKLDYE--LKPM----------DFSGIIPALQTKN 61 (226)
T ss_dssp -CEEEEEES-SBTTTBEEE--------TTEEESHHHHHHHHHHHHHTCCEE--EEEE----------CGGGHHHHHHTTS
T ss_pred ceEEEEECC-CCCCeeEec--------CCcEEEeeHHHHHHHHHHhCCEEE--EEEC----------CHHHHHHHHhCCC
Confidence 579999986 689998852 347899999999999999997554 4444 6899999999999
Q ss_pred ccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCC
Q 044527 535 FDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQG 614 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 614 (860)
+|++++++..+++|.+.+.|+.|++....+++++++.. .
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~-~---------------------------------------- 100 (226)
T 1wdn_A 62 VDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN-D---------------------------------------- 100 (226)
T ss_dssp SSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC-S----------------------------------------
T ss_pred CCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCC-C----------------------------------------
Confidence 99998888889999999999999999999999987752 0
Q ss_pred cccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHHh
Q 044527 615 SRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPGA 694 (860)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~~ 694 (860)
+..++++.+++|++..++....+
T Consensus 101 ---------------------------------------------------------i~~~~dL~g~~i~~~~g~~~~~~ 123 (226)
T 1wdn_A 101 ---------------------------------------------------------VKSVKDLDGKVVAVKSGTGSVDY 123 (226)
T ss_dssp ---------------------------------------------------------CSSSTTTTTCEEEEETTSHHHHH
T ss_pred ---------------------------------------------------------CCCHHHhCCCEEEEEcCCcHHHH
Confidence 12233448999999999998888
Q ss_pred hhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC-ccceeeccccccccCceEEEeccCCc-chHHH
Q 044527 695 LSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS-AHYTTAAAKYTTSTNGFGFVFQKGSP-LVHDI 772 (860)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~k~sp-l~~~i 772 (860)
++.. .+..++..+++..+++++|.+|++|+++.+...+.++.++.. ..+++++... ...+++++++|++| +.+.+
T Consensus 124 l~~~-~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~k~~~~l~~~~ 200 (226)
T 1wdn_A 124 AKAN-IKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSL--EAQQYGIAFPKGSDELRDKV 200 (226)
T ss_dssp HHHH-CCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEE--EEEEEEEEECTTCHHHHHHH
T ss_pred HHHh-CCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCc--ccCceEEEEeCCCHHHHHHH
Confidence 8653 344577788999999999999999999999999999887762 3677777666 77789999999997 99999
Q ss_pred HHHHHHHhhcchHHHHHHHHcCC
Q 044527 773 SRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 773 n~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
|++|.+|.++|.++++.+||+..
T Consensus 201 ~~~l~~l~~~g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 201 NGALKTLRENGTYNEIYKKWFGT 223 (226)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHSS
T ss_pred HHHHHHHHhCChHHHHHHHHcCC
Confidence 99999999999999999999986
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.83 E-value=6e-20 Score=188.12 Aligned_cols=221 Identities=14% Similarity=0.190 Sum_probs=183.8
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCC-CceeEEEEeecCCCCCccCCCHHHHHHHHHc
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLT-FEVPYEFIPFVDAGGRVAAGSYSDLIDQVYF 532 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~-f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~ 532 (860)
.++|+|++.. .++||.+. . ++++.|+++|+++.+++++| + ++++.+. +|.+++.++.+
T Consensus 7 ~~~l~v~~~~-~~~P~~~~---~-----~g~~~G~~~dl~~~i~~~~g~~--~~~~~~~----------~~~~~~~~l~~ 65 (246)
T 4eq9_A 7 KKEIIVATNG-SPRPFIYE---E-----NGELTGYEIEVVRAIFKDSDKY--DVKFEKT----------EWSGVFAGLDA 65 (246)
T ss_dssp CEEEEEEECC-CSTTTSEE---E-----TTEEESHHHHHHHHHHTTCSSE--EEEEEEC----------CHHHHHHHHHT
T ss_pred CCEEEEEeCC-CcCCeEEc---C-----CCCCcccHHHHHHHHHHHcCCc--eEEEEeC----------CHHHHHHHHhC
Confidence 3689999987 68999983 2 66899999999999999999 7 5555554 79999999999
Q ss_pred CcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCc
Q 044527 533 QKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEF 612 (860)
Q Consensus 533 g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 612 (860)
|++|++++++..+++|.+.+.||.||+....++++++...
T Consensus 66 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 105 (246)
T 4eq9_A 66 DRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDS---------------------------------------- 105 (246)
T ss_dssp TSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCC----------------------------------------
T ss_pred CCcCEEecccccChhhhhceeeccceecCceEEEEECCCC----------------------------------------
Confidence 9999999889999999999999999999999999998431
Q ss_pred CCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHH
Q 044527 613 QGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVP 692 (860)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~ 692 (860)
.+..++++.+++||+..++...
T Consensus 106 ----------------------------------------------------------~i~~~~dL~g~~i~~~~g~~~~ 127 (246)
T 4eq9_A 106 ----------------------------------------------------------SIKSLDDIGGKSTEVVQATTSA 127 (246)
T ss_dssp ----------------------------------------------------------SCSSGGGCTTCEEEECTTCHHH
T ss_pred ----------------------------------------------------------CCCCHHHhCCCEEEEecCccHH
Confidence 0223334589999999999988
Q ss_pred HhhhcC--CCCCc--Ccc-ccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCc-eEEEeccC
Q 044527 693 GALSNL--NFKDS--RLK-KYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNG-FGFVFQKG 765 (860)
Q Consensus 693 ~~~~~~--~~~~~--~~~-~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~-~~~~~~k~ 765 (860)
.++... ..+.. ++. ...+.++++++|.+|++|+++.+...+.+++++. .+.++++.... ...+ ++++++|+
T Consensus 128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~ 205 (246)
T 4eq9_A 128 KQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPS--DQQPYVYPLLAQG 205 (246)
T ss_dssp HHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCC--SSCCEECCEEETT
T ss_pred HHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcC--CCCCcEEEEEcCC
Confidence 877641 12222 333 2358899999999999999999999999988876 34688887766 5555 89999999
Q ss_pred Cc-chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 766 SP-LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 766 sp-l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+| +++.||++|.+|+++|.++++.++|+..
T Consensus 206 ~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 206 QDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 98 9999999999999999999999999986
No 61
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.82 E-value=2.4e-19 Score=181.41 Aligned_cols=219 Identities=20% Similarity=0.358 Sum_probs=183.8
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. +++||.+. ++ ++++.|+++|+++.+++++|++ +++.+. +|.+++.++.+|
T Consensus 5 a~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~~--~~~~~~----------~~~~~~~~l~~g 64 (229)
T 2y7i_A 5 ARTLHFGTSA-TYAPYEFV--DA-----DNKIVGFDIDVANAVCKEMQAE--CSFTNQ----------SFDSLIPSLRFK 64 (229)
T ss_dssp CCEEEEEECC-CBTTTBEE--CT-----TSCEESHHHHHHHHHHHHTTCE--EEEEEC----------CGGGHHHHHHTT
T ss_pred CCcEEEEeCC-CcCCceEE--CC-----CCCCcceeHHHHHHHHHHhCCe--EEEEEc----------CHHHHHHHHhCC
Confidence 4689999975 68999985 33 5689999999999999999975 455554 789999999999
Q ss_pred cccEEEeceeecccccceeecccccccc-ceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCc
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDM-GIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEF 612 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~-~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 612 (860)
++|++++++..+++|.+.+.||.|++.. ..+++++++.. .
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~-~-------------------------------------- 105 (229)
T 2y7i_A 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGAY-H-------------------------------------- 105 (229)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTSC-C--------------------------------------
T ss_pred CceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCCC-C--------------------------------------
Confidence 9999987888999999999999999999 99999987751 1
Q ss_pred CCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHH
Q 044527 613 QGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVP 692 (860)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~ 692 (860)
++.+ +++++||+..++...
T Consensus 106 ----------------------------------------------------------~~~d---L~g~~v~~~~g~~~~ 124 (229)
T 2y7i_A 106 ----------------------------------------------------------TFAD---LKGKKVGLENGTTHQ 124 (229)
T ss_dssp ----------------------------------------------------------STGG---GTTCEEEEETTSHHH
T ss_pred ----------------------------------------------------------CHHH---HCCCEEEEecCCcHH
Confidence 2333 389999999999988
Q ss_pred HhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecccccc---ccCceEEEeccCCc-c
Q 044527 693 GALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTT---STNGFGFVFQKGSP-L 768 (860)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~k~sp-l 768 (860)
.++++. .+..++..+++..+++++|.+|++|+++.+...+.+++++.. ++++++..+.. ...+++++++|++| +
T Consensus 125 ~~l~~~-~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (229)
T 2y7i_A 125 RYLQDK-QQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDNDAL 202 (229)
T ss_dssp HHHHHH-CTTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTCHHH
T ss_pred HHHHHh-CCCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCCHHH
Confidence 888653 344577888999999999999999999999999999888766 67777654300 12478999999998 9
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHcC
Q 044527 769 VHDISRAIARLREEGTLAKIENVWFN 794 (860)
Q Consensus 769 ~~~in~~i~~l~e~G~~~~~~~~~~~ 794 (860)
.+.+|++|.+|+++|.++++.+||+.
T Consensus 203 ~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 203 LQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99999999999999999999999985
No 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.82 E-value=9.2e-20 Score=185.85 Aligned_cols=222 Identities=19% Similarity=0.278 Sum_probs=181.5
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. +++||.+. ++ ++++.|+++|+++++++++|++ +++.+. +|.+++.++.+|
T Consensus 3 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~~--~~~~~~----------~~~~~~~~l~~g 62 (239)
T 1lst_A 3 PQTVRIGTDT-TYAPFSSK--DA-----KGEFIGFDIDLGNEMCKRMQVK--CTWVAS----------DFDALIPSLKAK 62 (239)
T ss_dssp CSEEEEEECS-CBTTTBEE--CT-----TCCEESHHHHHHHHHHHHHTCE--EEEEEC----------CGGGHHHHHHTT
T ss_pred cceEEEEECC-CcCCeeEE--CC-----CCCEeeEHHHHHHHHHHHHCCe--EEEEeC----------CHHHHHHHHhCC
Confidence 3689999965 78999985 33 5689999999999999999975 555554 789999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+.....++++++...
T Consensus 63 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~---------------------------------------- 102 (239)
T 1lst_A 63 KIDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI---------------------------------------- 102 (239)
T ss_dssp SCSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC----------------------------------------
T ss_pred CCCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC----------------------------------------
Confidence 9999988889999999999999999999999999987630
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
...++++.+++||+..++....
T Consensus 103 ----------------------------------------------------------~~~~~dL~g~~v~~~~g~~~~~ 124 (239)
T 1lst_A 103 ----------------------------------------------------------QPTLESLKGKHVGVLQGSTQEA 124 (239)
T ss_dssp ----------------------------------------------------------CSSHHHHTTCEEEEETTSHHHH
T ss_pred ----------------------------------------------------------CCCHHHhCCCEEEEEcCccHHH
Confidence 0123344899999999999888
Q ss_pred hhhcCC-CCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHH-HHhcc-Cccceeecccccccc-----CceEEEeccC
Q 044527 694 ALSNLN-FKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRA-FLSKY-SAHYTTAAAKYTTST-----NGFGFVFQKG 765 (860)
Q Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~-~~~~~-~~~l~~~~~~~~~~~-----~~~~~~~~k~ 765 (860)
++++.. .+..++..+++.++++++|.+|++|+++.+...+.+ ++.+. ..++++++..+ .. .+++++++|+
T Consensus 125 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~k~ 202 (239)
T 1lst_A 125 YANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSV--KDKKYFGDGTGVGLRKD 202 (239)
T ss_dssp HHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCB--CCHHHHCSSBCCEECTT
T ss_pred HHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEecccc--ccccccCcceEEEEeCC
Confidence 876432 123467788999999999999999999999988764 44443 23576666544 32 3689999999
Q ss_pred Cc-chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 766 SP-LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 766 sp-l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+| +.+.+|++|.+|+++|.++++.+||+..
T Consensus 203 ~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 203 DTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 99 9999999999999999999999999986
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.81 E-value=1.4e-19 Score=188.41 Aligned_cols=221 Identities=19% Similarity=0.272 Sum_probs=181.4
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|+|++.. ++|||.+. +..++ .+++.|+++|+++++++++|++ +++.+. +|.+++.++.+|
T Consensus 20 ~~~l~v~~~~-~~pP~~~~--~~~~~--~g~~~G~~~dl~~~i~~~~g~~--v~~~~~----------~~~~~~~~l~~G 82 (271)
T 2iee_A 20 KGKIVVATSG-TLYPTSYH--DTDSG--SDKLTGYEVEVVREAAKRLGLK--VEFKEM----------GIDGMLTAVNSG 82 (271)
T ss_dssp HTEEEEEECS-CBTTTBEE--ETTTT--CCEEECHHHHHHHHHHHHTTCE--EEEEEC----------CSTTHHHHHHHT
T ss_pred CCeEEEEECC-CCCCeeEe--CCCCC--CCCceeeHHHHHHHHHHHcCCe--EEEEEC----------CHHHHHHHHHCC
Confidence 5789999986 68999985 33111 2789999999999999999974 555554 689999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+.....+++++....
T Consensus 83 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~---------------------------------------- 122 (271)
T 2iee_A 83 QVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLS---------------------------------------- 122 (271)
T ss_dssp SSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGG----------------------------------------
T ss_pred CcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCC----------------------------------------
Confidence 9999988888999999999999999999999999877520
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
.+..++++++++||+..++....
T Consensus 123 ---------------------------------------------------------~i~~~~dL~g~~i~v~~g~~~~~ 145 (271)
T 2iee_A 123 ---------------------------------------------------------GIKTLKDLKGKKAAGAATTVYME 145 (271)
T ss_dssp ---------------------------------------------------------GCSSGGGGTTCEEESCTTSHHHH
T ss_pred ---------------------------------------------------------CCCCHHHhCCCEEEEeCCccHHH
Confidence 02233445899999999999888
Q ss_pred hhhcCCCCCcCccccCCHHHH--HHHHhcCCcEEEEcchHHHHHHHh-cc-Cccceee-ccccccccCceEEEeccCCc-
Q 044527 694 ALSNLNFKDSRLKKYNSAEEY--ANALSMGSISAIVDEIPYVRAFLS-KY-SAHYTTA-AAKYTTSTNGFGFVFQKGSP- 767 (860)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~~~i~~~~~~~~~~~-~~-~~~l~~~-~~~~~~~~~~~~~~~~k~sp- 767 (860)
+++..+. ++..+++..++ +++|.+|++| ++.+.....++.. +. ...++++ +..+ ...+++++++|++|
T Consensus 146 ~l~~~~~---~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~k~~~~ 219 (271)
T 2iee_A 146 VARKYGA---KEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKY--MPNKQALVMKKSNAA 219 (271)
T ss_dssp HHHHTTC---EEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCE--EEEEECCEEETTCHH
T ss_pred HHHHcCC---ceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCc--ccceEEEEEcCCCHH
Confidence 8876432 77788888888 9999999999 7777666666555 43 3367776 5566 67789999999998
Q ss_pred chHHHHHHHHHHhhcchHHHHHHHHcC
Q 044527 768 LVHDISRAIARLREEGTLAKIENVWFN 794 (860)
Q Consensus 768 l~~~in~~i~~l~e~G~~~~~~~~~~~ 794 (860)
+++.||++|.+|+++|.++++.+||+.
T Consensus 220 l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 220 LQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 999999999999999999999999998
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.81 E-value=2e-19 Score=185.68 Aligned_cols=224 Identities=17% Similarity=0.155 Sum_probs=184.0
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|+|++. ++|||.+. ++ ++++.|+++|+++++++++|++ ++++.+. +|.+++.++.+|
T Consensus 12 ~~~l~v~~~--~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~----------~~~~~~~~l~~g 71 (257)
T 2q88_A 12 QGFARIAIA--NEPPFTAV--GA-----DGKVSGAAPDVAREIFKRLGVA-DVVASIS----------EYGAMIPGLQAG 71 (257)
T ss_dssp HTEEEEEEC--CCTTTCEE--CT-----TCCEESHHHHHHHHHHHHTTCC-EEEEEEC----------CGGGHHHHHHTT
T ss_pred CCeEEEEcC--CCCCeeEE--CC-----CCCcccccHHHHHHHHHHcCCC-eeeEEeC----------CHHHHHHHHHCC
Confidence 468999998 68999985 33 6689999999999999999985 2555554 689999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.||.||+.....++++++....
T Consensus 72 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~~--------------------------------------- 112 (257)
T 2q88_A 72 RHDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPLG--------------------------------------- 112 (257)
T ss_dssp SCSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTTC---------------------------------------
T ss_pred CcCEEEecccCCHHHHhccccccchhcCceEEEEECCCccC---------------------------------------
Confidence 99999888889999999999999999999999998875211
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhc---CCcEEEecCCc
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLAS---MDNIGSQLGSV 690 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~---~~~i~~~~~~~ 690 (860)
+..++++. +++||+..++.
T Consensus 113 ----------------------------------------------------------i~~~~dL~~~~g~~i~~~~g~~ 134 (257)
T 2q88_A 113 ----------------------------------------------------------LKSYKDIADNPDAKIGAPGGGT 134 (257)
T ss_dssp ----------------------------------------------------------CCBHHHHHHCTTCCEEECTTSH
T ss_pred ----------------------------------------------------------CCCHHHHhccCCceEEEECCcc
Confidence 22333346 99999999999
Q ss_pred HHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC-ccceeeccccccccCceEEEeccCCc-c
Q 044527 691 VPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS-AHYTTAAAKYTTSTNGFGFVFQKGSP-L 768 (860)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~k~sp-l 768 (860)
...+++..+.+..++..+++..+++++|.+|++|+++.+...+.+++++.. ..+............+++++++|+++ +
T Consensus 135 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 214 (257)
T 2q88_A 135 EEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEAL 214 (257)
T ss_dssp HHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHH
T ss_pred cHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHH
Confidence 988887765666678889999999999999999999999999999887753 24544432110013467889999987 9
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHcC
Q 044527 769 VHDISRAIARLREEGTLAKIENVWFN 794 (860)
Q Consensus 769 ~~~in~~i~~l~e~G~~~~~~~~~~~ 794 (860)
.+.||++|.+|.++|.++++.++|..
T Consensus 215 ~~~l~~~l~~~~~~g~~~~i~~k~~~ 240 (257)
T 2q88_A 215 RDAFDVELAKLKESGEFAKIIEPYGF 240 (257)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHGGGTC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHhCC
Confidence 99999999999999999999999954
No 65
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.81 E-value=2.4e-19 Score=181.14 Aligned_cols=220 Identities=20% Similarity=0.314 Sum_probs=180.6
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++|+|++. ++|||.+. + ++++.|+++|+++.+++++|++++++..+ +|.+++.++.+|+
T Consensus 3 ~~l~v~~~--~~~P~~~~---~-----~g~~~G~~~dl~~~~~~~~g~~~~~~~~~-----------~~~~~~~~l~~g~ 61 (228)
T 2pyy_A 3 QPLLVATR--VIPPFVLS---N-----KGELSGFSIDLWRSIATQIGIESKLIEYS-----------SVPELISAIKDNK 61 (228)
T ss_dssp -CEEEEEC--CBTTTBBC---C--------CBSHHHHHHHHHHHHHTCCEEEEECS-----------SHHHHHHHHHTTS
T ss_pred ceEEEEec--CCCCeEEe---c-----CCceEEEeHHHHHHHHHHhCCcEEEEEcC-----------CHHHHHHHHHCCC
Confidence 57999998 68999874 2 56789999999999999999865555443 6899999999999
Q ss_pred ccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCC
Q 044527 535 FDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQG 614 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~ 614 (860)
+|++++++..+++|.+.+.|+.|++....+++++++....
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~---------------------------------------- 101 (228)
T 2pyy_A 62 VNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESGT---------------------------------------- 101 (228)
T ss_dssp CSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC---------------------------------------------
T ss_pred cCEEEeccccCHHHHccceecccchhcceEEEEECCcccc----------------------------------------
Confidence 9999888888999999999999999999999998775200
Q ss_pred cccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHHh
Q 044527 615 SRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPGA 694 (860)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~~ 694 (860)
..+..++++.++++++..++....+
T Consensus 102 -------------------------------------------------------~~~~~~~dL~g~~i~~~~g~~~~~~ 126 (228)
T 2pyy_A 102 -------------------------------------------------------GDIRSIDDLPGKVVATTAGSTAATY 126 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCTTCEEEEETTSHHHHH
T ss_pred -------------------------------------------------------CCcCCHHHcCCCeEEEEcCcHHHHH
Confidence 0122333458999999999998888
Q ss_pred hhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-CccceeeccccccccCceEEEeccCCcchHHHH
Q 044527 695 LSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAAAKYTTSTNGFGFVFQKGSPLVHDIS 773 (860)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~k~spl~~~in 773 (860)
+++.+ .++..+.+..+++++|.+|++|+++.+...+.+++++. ...+.+.+..+ ...+++++++|++++.+.+|
T Consensus 127 l~~~~---~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 201 (228)
T 2pyy_A 127 LREHH---ISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSIL--REESYGIILPNNSPYRKPIN 201 (228)
T ss_dssp HHHTT---CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEE--EEEEECCEECTTCTTHHHHH
T ss_pred HHHcC---CceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccc--cceeEEEEEeCChHHHHHHH
Confidence 87633 36778899999999999999999999999999888776 23677777666 67789999999988999999
Q ss_pred HHHHHHhhcchHHHHHHHHcCC
Q 044527 774 RAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 774 ~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
++|.+|+++|.++++.+||+..
T Consensus 202 ~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 202 QALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp HHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999986
No 66
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.79 E-value=1.5e-18 Score=180.22 Aligned_cols=225 Identities=22% Similarity=0.327 Sum_probs=185.3
Q ss_pred CCeEEEEecCCCcccceEee-eCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHc
Q 044527 454 INKLRIGVPVNGLKEFVNVV-WDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYF 532 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~-~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~ 532 (860)
.++++|++.. .++||.+.. .+. ++++.|+++|+++.+++++|. ++++++. +|.+++.++.+
T Consensus 38 ~~~l~v~~~~-~~~P~~~~~~~~~-----~g~~~G~~~dl~~~~~~~~g~--~~~~~~~----------~~~~~~~~l~~ 99 (269)
T 4i62_A 38 KGKLVVALNP-DFAPFEYQKVVDG-----KNQIVGSDIELAKAIATELGV--ELELSPM----------SFDNVLASVQS 99 (269)
T ss_dssp HTEEEEEECS-CBTTTBEEEEETT-----EEEEESHHHHHHHHHHHHHTC--EEEEEEC----------CHHHHHHHHHT
T ss_pred CCeEEEEecC-CCCCceeecccCC-----CCcEeeecHHHHHHHHHHHCC--ceEEEEc----------CHHHHHHHHhC
Confidence 3589999986 689998722 133 678999999999999999997 4555554 79999999999
Q ss_pred CcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCc
Q 044527 533 QKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEF 612 (860)
Q Consensus 533 g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 612 (860)
|++|++++++..+++|.+.+.||.|++.....++++++....
T Consensus 100 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~-------------------------------------- 141 (269)
T 4i62_A 100 GKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLAT-------------------------------------- 141 (269)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTTT--------------------------------------
T ss_pred CCccEEecCCcCCHhHhhceecccchhhcceEEEEECCcccc--------------------------------------
Confidence 999999888999999999999999999999999998874211
Q ss_pred CCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHH
Q 044527 613 QGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVP 692 (860)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~ 692 (860)
+..++++++++|++..++...
T Consensus 142 -----------------------------------------------------------i~~~~dL~g~~i~~~~g~~~~ 162 (269)
T 4i62_A 142 -----------------------------------------------------------YQSVNDLAQKKVGAQKGSIQE 162 (269)
T ss_dssp -----------------------------------------------------------CSSGGGGC-CEEEEETTSHHH
T ss_pred -----------------------------------------------------------ccCHHHhCCCeEEEecCchHH
Confidence 223344589999999999988
Q ss_pred HhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccc-cccCceEEEeccCCc-chH
Q 044527 693 GALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYT-TSTNGFGFVFQKGSP-LVH 770 (860)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~k~sp-l~~ 770 (860)
.++.. ..+..++..+++.++++++|.+|++|+++.+...+.++.++.. .+.+....+. ....+++++++|++| +.+
T Consensus 163 ~~l~~-~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (269)
T 4i62_A 163 TMAKD-LLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNP-DLAIADLNFEKEQDDSYAVAMKKDSKELKE 240 (269)
T ss_dssp HHHHH-HCTTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEECSCCCCC-CCCEECCEEESSCHHHHH
T ss_pred HHHHH-hCCCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCC-CCeEEeeccCCCcccceEEEEeCCCHHHHH
Confidence 88865 3445678889999999999999999999999999988888764 3444433320 036788999999998 999
Q ss_pred HHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 771 DISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 771 ~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
.+|++|.+++++|.++++.++|+..
T Consensus 241 ~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 241 AVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHhCC
Confidence 9999999999999999999999975
No 67
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.79 E-value=1.2e-18 Score=182.97 Aligned_cols=226 Identities=17% Similarity=0.235 Sum_probs=187.5
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHh----CCC-ceeEEEEeecCCCCCccCCCHHHHHH
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDT----LTF-EVPYEFIPFVDAGGRVAAGSYSDLID 528 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~----l~f-~~~~~~~~~~~~~~~~~~g~~~g~~~ 528 (860)
.++|||++.. .++||.+. ++ ++++.|+++|+++.+++. +|. .+++++.+. +|..++.
T Consensus 16 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~----------~~~~~~~ 77 (287)
T 2vha_A 16 NGVIVVGHRE-SSVPFSYY--DN-----QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI----------TSQNRIP 77 (287)
T ss_dssp HTEEEEEECS-EETTTEEE--CS-----SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC----------CTTTHHH
T ss_pred CCeEEEEEcC-CCCCceEE--CC-----CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEEC----------CHHHHHH
Confidence 4789999986 58999985 33 568999999999999976 562 146667665 6889999
Q ss_pred HHHcCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhcccc
Q 044527 529 QVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPV 608 (860)
Q Consensus 529 ~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~ 608 (860)
++.+|++|++++++..+++|.+.+.||.||+.....++++++..
T Consensus 78 ~l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~------------------------------------ 121 (287)
T 2vha_A 78 LLQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGD------------------------------------ 121 (287)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSS------------------------------------
T ss_pred HHHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCC------------------------------------
Confidence 99999999998888899999999999999999999999988752
Q ss_pred CCCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecC
Q 044527 609 NDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLG 688 (860)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~ 688 (860)
+..++++.+++||+..+
T Consensus 122 ---------------------------------------------------------------i~sl~dL~g~~v~~~~g 138 (287)
T 2vha_A 122 ---------------------------------------------------------------IKDFADLKGKAVVVTSG 138 (287)
T ss_dssp ---------------------------------------------------------------CCSGGGGTTCEEEEETT
T ss_pred ---------------------------------------------------------------CCCHHHcCCCEEEEeCC
Confidence 12233448999999999
Q ss_pred CcHHHhhhcCC---CCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc--CccceeeccccccccCceEEEec
Q 044527 689 SVVPGALSNLN---FKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY--SAHYTTAAAKYTTSTNGFGFVFQ 763 (860)
Q Consensus 689 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~ 763 (860)
+....++.... ....+++.+.+.++++++|.+|++|+++.+...+.++.++. ...+.+++..+ ...+++++++
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 216 (287)
T 2vha_A 139 TTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQ--SQEAYGCMLR 216 (287)
T ss_dssp SHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCS--CEEEEEEEEC
T ss_pred CcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCcc--ccCceEEEEe
Confidence 98877775421 12346778899999999999999999999999999988764 23677877777 7788999999
Q ss_pred cCCc-chHHHHHHHHHHhhcchHHHHHHHHcCCCCC
Q 044527 764 KGSP-LVHDISRAIARLREEGTLAKIENVWFNTQQS 798 (860)
Q Consensus 764 k~sp-l~~~in~~i~~l~e~G~~~~~~~~~~~~~~~ 798 (860)
|++| +++.+|++|.+|+++|.++++.++|+.....
T Consensus 217 k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (287)
T 2vha_A 217 KDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIP 252 (287)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCBT
T ss_pred CCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCCCC
Confidence 9998 9999999999999999999999999987433
No 68
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.79 E-value=2.6e-18 Score=178.34 Aligned_cols=218 Identities=22% Similarity=0.297 Sum_probs=186.7
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
..+++|++.. .++||.+. ++ ++++.|+++|+++.+++++|. ++++.+. +|.+++.++.+|
T Consensus 30 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~g~--~~~~~~~----------~~~~~~~~l~~g 89 (268)
T 3qax_A 30 NRIWIVGTNA-TYPPFEYV--DA-----QGEVVGFDIDLAKAISEKLGK--QLEVREF----------AFDALILNLKKH 89 (268)
T ss_dssp -CEEEEEECS-CBTTTBEE--CT-----TSCEESHHHHHHHHHHHHHTC--EEEEEEC----------CGGGHHHHHHHT
T ss_pred CCeEEEEECC-CCCCceEE--CC-----CCCEEEEEHHHHHHHHHHhCC--eEEEEec----------CHHHHHHHHhCC
Confidence 4689999986 68999985 33 668999999999999999996 5555554 789999999999
Q ss_pred cccEEEeceeecccccceeecccccc--ccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYT--DMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDE 611 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~--~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 611 (860)
++|++++++..+++|.+.+.| .||+ ..+..++++++.. .
T Consensus 90 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~-~------------------------------------- 130 (268)
T 3qax_A 90 RIDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSL-E------------------------------------- 130 (268)
T ss_dssp SSSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTS-C-------------------------------------
T ss_pred CccEEeecCccCHhHhcceee-ecceecccceEEEEECCCC-C-------------------------------------
Confidence 999998889999999999999 9999 8999999988741 0
Q ss_pred cCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcH
Q 044527 612 FQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVV 691 (860)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~ 691 (860)
+..++++++++|++..++..
T Consensus 131 ------------------------------------------------------------i~~~~dL~g~~i~~~~g~~~ 150 (268)
T 3qax_A 131 ------------------------------------------------------------TPVLPLTQYSSVAVQTGTYQ 150 (268)
T ss_dssp ------------------------------------------------------------SCCCCGGGSSCEEEETTSHH
T ss_pred ------------------------------------------------------------CCCHHHhCCCEEEEecCcHH
Confidence 22223448999999999999
Q ss_pred HHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCc----eEEEeccCCc
Q 044527 692 PGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNG----FGFVFQKGSP 767 (860)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~k~sp 767 (860)
..++.. .+..++..+++.++++++|.+|++|+++.+...+.++.++.. .+.+++..+ ...+ ++++++|++|
T Consensus 151 ~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~k~~~ 225 (268)
T 3qax_A 151 EHYLLS--QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFP-NLVATRLEL--PPECWVLGCGLGVAKDRP 225 (268)
T ss_dssp HHHHHT--STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCT-TEEEEEEEC--CGGGCBCCEEEEECTTCH
T ss_pred HHHHHh--CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCC-CcEEecCcc--CcccccccEEEEEeCCCH
Confidence 888876 455678889999999999999999999999999999988775 477777666 6666 9999999998
Q ss_pred -chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 768 -LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 768 -l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+++.+|++|.++.++|.++++.++|+..
T Consensus 226 ~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 226 EEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 9999999999999999999999999986
No 69
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.78 E-value=2.2e-18 Score=180.41 Aligned_cols=219 Identities=20% Similarity=0.268 Sum_probs=186.6
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. .++||.+. +. ++++.|+++|+++.+++++|+ ++++++. +|..++.+|.+|
T Consensus 56 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~G~--~v~~~~~----------~~~~~~~~l~~G 115 (283)
T 2yln_A 56 KGTVTVGTEG-TYAPFTYH--DK-----DGKLTGYDVEVTRAVAEKLGV--KVEFKET----------QWDSMMAGLKAG 115 (283)
T ss_dssp TCEEEEEECS-EETTTEEE--CT-----TSCEESHHHHHHHHHHHHHTC--EEEEEEC----------CGGGHHHHHHHT
T ss_pred CCeEEEEECC-CCCCeeEE--CC-----CCCEeeehHHHHHHHHHHcCC--ceEEEEC----------CHHHHHHHHHCC
Confidence 4689999985 48999985 33 568999999999999999997 5555554 589999999999
Q ss_pred cccEEEeceee-cccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCc
Q 044527 534 KFDAAVGDTTI-TANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEF 612 (860)
Q Consensus 534 ~~Di~~~~~~~-t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~ 612 (860)
++|++++++.. +++|.+.+.|+.||+.....+++++...
T Consensus 116 ~~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~---------------------------------------- 155 (283)
T 2yln_A 116 RFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN---------------------------------------- 155 (283)
T ss_dssp SCSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCS----------------------------------------
T ss_pred CcCEEEecCccCChhhhcceEeccCeeeecEEEEEECCCC----------------------------------------
Confidence 99999888887 8999999999999999999999998752
Q ss_pred CCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHH
Q 044527 613 QGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVP 692 (860)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~ 692 (860)
+..++++++++|++..++...
T Consensus 156 -----------------------------------------------------------i~s~~dL~G~~v~v~~g~~~~ 176 (283)
T 2yln_A 156 -----------------------------------------------------------IKSIADIKGVKTAQSLTSNYG 176 (283)
T ss_dssp -----------------------------------------------------------CCSGGGCTTSEEEECTTSHHH
T ss_pred -----------------------------------------------------------CCCHHHhCCCEEEEecCchHH
Confidence 122334489999999999988
Q ss_pred HhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-Cccceeec-cccccc-cCceEEEeccCCc-c
Q 044527 693 GALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTAA-AKYTTS-TNGFGFVFQKGSP-L 768 (860)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~~-~~~~~~-~~~~~~~~~k~sp-l 768 (860)
.+++..+ .+++.+.+..+++++|.+|++|+++.+...+.+++++. ...+++++ ..+ . ..+++++++|++| +
T Consensus 177 ~~l~~~~---~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~i~~~k~~~~l 251 (283)
T 2yln_A 177 EKAKAAG---AQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPA--DEKVGSGLIVNKGNDEA 251 (283)
T ss_dssp HHHHHTT---CEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCG--GGCEEECCEEESSCHHH
T ss_pred HHHHHcC---CeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCccc--CCcccEEEEEeCCCHHH
Confidence 8887642 36778889999999999999999999999999988776 33588887 666 6 7789999999998 9
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHcCCC
Q 044527 769 VHDISRAIARLREEGTLAKIENVWFNTQ 796 (860)
Q Consensus 769 ~~~in~~i~~l~e~G~~~~~~~~~~~~~ 796 (860)
.+.||++|.+|+++|.++++.+||+...
T Consensus 252 ~~~i~~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 252 VAKFSTAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999863
No 70
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.78 E-value=4e-18 Score=177.44 Aligned_cols=219 Identities=19% Similarity=0.345 Sum_probs=183.1
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.++|||++.. .++||.+.. ++++.|+++|+++.+++++|++ +++++. +|.+++.++.+|
T Consensus 41 ~~~l~v~~~~-~~~P~~~~~--------~g~~~G~~~dl~~~i~~~~g~~--v~~~~~----------~~~~~~~~l~~G 99 (272)
T 2pvu_A 41 KKKVVVGTDA-AFAPFEYMQ--------KGKIVGFDVDLLDAVMKAAGLD--YELKNI----------GWDPLFASLQSK 99 (272)
T ss_dssp CCCEEEEECC-CBTTTBEEE--------TTEEESHHHHHHHHHHHHHTCC--EEEEEC----------CHHHHHHHHHHT
T ss_pred CCeEEEEECC-CCCCeEEec--------CCeEEEEHHHHHHHHHHHhCCc--eEEEEC----------CHHHHHHHHhCC
Confidence 5789999986 689998852 5578999999999999999975 455554 699999999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQ 613 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~ 613 (860)
++|++++++..+++|.+.+.|+.||+.....++++++..
T Consensus 100 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~----------------------------------------- 138 (272)
T 2pvu_A 100 EVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGSP----------------------------------------- 138 (272)
T ss_dssp SSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCC-----------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCC-----------------------------------------
Confidence 999998888889999999999999999999999988753
Q ss_pred CcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHH
Q 044527 614 GSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPG 693 (860)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~ 693 (860)
+..++++++++|++..++....
T Consensus 139 ----------------------------------------------------------i~~~~dL~g~~i~~~~g~~~~~ 160 (272)
T 2pvu_A 139 ----------------------------------------------------------VKNALDLKGKTIGVQNATTGQE 160 (272)
T ss_dssp ----------------------------------------------------------CCSGGGGTTSCEEEETTSHHHH
T ss_pred ----------------------------------------------------------CCCHHHhCCCeEEEEcCchHHH
Confidence 1123334899999999998888
Q ss_pred hhhcC-CCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC-ccceeeccc--cccccCceEEEeccCCcch
Q 044527 694 ALSNL-NFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS-AHYTTAAAK--YTTSTNGFGFVFQKGSPLV 769 (860)
Q Consensus 694 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~-~~l~~~~~~--~~~~~~~~~~~~~k~spl~ 769 (860)
+++.. + ...+++.+++..+++++|.+|++|+++.+...+.++.++.. .++.+++.. + ...+++++++|+..+.
T Consensus 161 ~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~k~~~l~ 237 (272)
T 2pvu_A 161 AAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNF--ASEYYGMIFPKNSELK 237 (272)
T ss_dssp HHHHHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTS--CCEEECCEEETTCTTH
T ss_pred HHHHhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEecccccc--CCceEEEEEeCCHHHH
Confidence 77653 2 34577888999999999999999999999999999887763 247776653 3 4567899999993399
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 770 HDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 770 ~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+.+|++|.++.++|.++++.+||+..
T Consensus 238 ~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 238 AKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 99999999999999999999999986
No 71
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.77 E-value=2.4e-18 Score=181.21 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=185.7
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhC---CCceeEEEEeecCCCCCccCCCHHHHHHHH
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTL---TFEVPYEFIPFVDAGGRVAAGSYSDLIDQV 530 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l---~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l 530 (860)
.++|+|++.. .++||.+. +. +++..|+++|+++.+++++ |.++ ++.+. +|.+++..+
T Consensus 43 ~~~l~v~~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~~~~g~~~--~~~~~----------~~~~~~~~l 102 (292)
T 1xt8_A 43 NGVVRIGVFG-DKPPFGYV--DE-----KGNNQGYDIALAKRIAKELFGDENKV--QFVLV----------EAANRVEFL 102 (292)
T ss_dssp HSSEEEEECS-EETTTEEE--CT-----TSCEESHHHHHHHHHHHHHHSCTTCE--EEEEC----------CGGGHHHHH
T ss_pred CCeEEEEECC-CCCCeeEE--CC-----CCCEeeEhHHHHHHHHHHhccCCceE--EEEEc----------CHHHHHHHH
Confidence 3679999976 68999985 33 5689999999999999999 9754 45554 588999999
Q ss_pred HcCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCC
Q 044527 531 YFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVND 610 (860)
Q Consensus 531 ~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 610 (860)
.+|++|++++++..+++|.+.+.|+.||+.....++++++..
T Consensus 103 ~~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-------------------------------------- 144 (292)
T 1xt8_A 103 KSNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSN-------------------------------------- 144 (292)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCC--------------------------------------
T ss_pred hCCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCCC--------------------------------------
Confidence 999999998888889999999999999999999999988752
Q ss_pred CcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCc
Q 044527 611 EFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSV 690 (860)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~ 690 (860)
+..++++++++|++..++.
T Consensus 145 -------------------------------------------------------------i~~~~dL~g~~i~~~~g~~ 163 (292)
T 1xt8_A 145 -------------------------------------------------------------ITSVEDLKDKTLLLNKGTT 163 (292)
T ss_dssp -------------------------------------------------------------CCSSGGGTTSEEEEETTSH
T ss_pred -------------------------------------------------------------CCCHHHhCCCEEEEeCCCc
Confidence 1222344899999999998
Q ss_pred HHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCce-EEEeccCCc-c
Q 044527 691 VPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGF-GFVFQKGSP-L 768 (860)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~k~sp-l 768 (860)
...+++.. .+..+++.+++.++++++|.+|++|+++.+...+.++.++.. .+++++..+ ...++ +++++|++| +
T Consensus 164 ~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~-~l~~~~~~~--~~~~~~~~~~~k~~~~l 239 (292)
T 1xt8_A 164 ADAYFTQN-YPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHP-DFKMGIKEL--GNKDVIAPAVKKGDKEL 239 (292)
T ss_dssp HHHHHHHH-CTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEEEEEEE--EEEEEECCEEETTCHHH
T ss_pred HHHHHHHh-CCCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCC-CeEEccccc--ccCceeEEEEeCCCHHH
Confidence 88887653 244577888999999999999999999999999999888765 477777666 66777 999999998 9
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 769 VHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 769 ~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
.+.+|++|.++.++|.++++.++|+..
T Consensus 240 ~~~l~~~l~~l~~~g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 240 KEFIDNLIIKLGQEQFFHKAYDETLKA 266 (292)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999999999999999999999984
No 72
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.77 E-value=3.6e-18 Score=179.62 Aligned_cols=218 Identities=21% Similarity=0.302 Sum_probs=186.0
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhC---CCceeEEEEeecCCCCCccCCCHHHHHHHHH
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTL---TFEVPYEFIPFVDAGGRVAAGSYSDLIDQVY 531 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l---~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~ 531 (860)
++|||++.. .++||.+. ++ +++..|+++|+++.+++++ |.+ +++++. +|..++.++.
T Consensus 55 ~~l~vg~~~-~~~P~~~~--~~-----~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~~----------~~~~~~~~l~ 114 (291)
T 2yjp_A 55 GVIRIGVFG-DKPPFGYV--DA-----NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVLT----------EAANRVEYVR 114 (291)
T ss_dssp TCEEEEECS-EETTTEEE--CT-----TSCEESHHHHHHHHHHHHHHSCGGG--EEEEEC----------CGGGHHHHHH
T ss_pred CeEEEEEcC-CCCCceEE--CC-----CCCEeehHHHHHHHHHHHhccCCce--EEEEEc----------cHHHHHHHHh
Confidence 579999975 68999885 33 6689999999999999999 874 555554 5789999999
Q ss_pred cCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCC
Q 044527 532 FQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDE 611 (860)
Q Consensus 532 ~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~ 611 (860)
+|++|++++++..+.+|.+.+.|+.||......++++++..
T Consensus 115 ~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~--------------------------------------- 155 (291)
T 2yjp_A 115 SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKP--------------------------------------- 155 (291)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSC---------------------------------------
T ss_pred CCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCC---------------------------------------
Confidence 99999998888889999999999999999999999998762
Q ss_pred cCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcH
Q 044527 612 FQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVV 691 (860)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~ 691 (860)
+..++++++++|++..++..
T Consensus 156 ------------------------------------------------------------i~sl~dL~gk~v~~~~g~~~ 175 (291)
T 2yjp_A 156 ------------------------------------------------------------ITDMAQLKDQTLLVNKGTTA 175 (291)
T ss_dssp ------------------------------------------------------------CCSGGGGTTSEEEEETTSHH
T ss_pred ------------------------------------------------------------CCCHHHhCCCEEEEecCCcH
Confidence 22233448999999999988
Q ss_pred HHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCce-EEEeccCCc-ch
Q 044527 692 PGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGF-GFVFQKGSP-LV 769 (860)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~k~sp-l~ 769 (860)
..++... .+..+++.+++..+++++|.+|++|+++.+...+.++.++.. .+.++...+ ...++ +++++|++| +.
T Consensus 176 ~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~k~~~~l~ 251 (291)
T 2yjp_A 176 DAFFTKS-HPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENP-NFEVAIGNL--GPAEFIAPAVQKGNADLL 251 (291)
T ss_dssp HHHHHHH-CTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEEEECCS--SSCEEECCEEETTCHHHH
T ss_pred HHHHHHh-CCCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCC-CeEEcCCcc--cCCcceEEEEeCCCHHHH
Confidence 8887653 344577888999999999999999999999999999888765 477777767 77777 999999998 99
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 770 HDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 770 ~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
+.||++|.+|.++|.++++.++|+..
T Consensus 252 ~~l~~al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 252 NWVNGEIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHhccc
Confidence 99999999999999999999999874
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.63 E-value=4.6e-16 Score=160.32 Aligned_cols=214 Identities=17% Similarity=0.291 Sum_probs=172.7
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhC---CCceeEEEEeecCCCCCccCCCHHHHHHHH
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTL---TFEVPYEFIPFVDAGGRVAAGSYSDLIDQV 530 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l---~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l 530 (860)
.++|||++.. .++||.+... . ++++.|+++|+++.+++++ |.+ +++.+. +|.+++..+
T Consensus 37 ~~~l~vg~~~-~~~p~~~~~~-~-----~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~----------~~~~~~~~l 97 (259)
T 2v25_A 37 KGQLIVGVKN-DVPHYALLDQ-A-----TGEIKGFEVDVAKLLAKSILGDDKK--IKLVAV----------NAKTRGPLL 97 (259)
T ss_dssp HTCEEEEECS-EETTTEEEET-T-----TTEEESHHHHHHHHHHHHHHSCTTS--EEEEEC----------CTTTHHHHH
T ss_pred CCeEEEEECC-CCCCeEEEEC-C-----CCeEEEeeHHHHHHHHHHhcCCCcc--eEEEEc----------CHHHHHHHH
Confidence 3679999976 6899987521 1 5589999999999999999 875 455554 678999999
Q ss_pred HcCcccEEEeceeecccccceeeccccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCC
Q 044527 531 YFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVND 610 (860)
Q Consensus 531 ~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~ 610 (860)
.+|++|++++++..+++|.+.+.|+.|++.....++++++..
T Consensus 98 ~~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------------------------------------- 139 (259)
T 2v25_A 98 DNGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKK-------------------------------------- 139 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGC--------------------------------------
T ss_pred hCCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCC--------------------------------------
Confidence 999999998888888999999999999999999999987652
Q ss_pred CcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCc
Q 044527 611 EFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSV 690 (860)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~ 690 (860)
+..++++.++++++..++.
T Consensus 140 -------------------------------------------------------------i~~~~dL~g~~i~~~~g~~ 158 (259)
T 2v25_A 140 -------------------------------------------------------------YKSLADMKGANIGVAQAAT 158 (259)
T ss_dssp -------------------------------------------------------------CCSGGGCTTCEEEEETTCS
T ss_pred -------------------------------------------------------------CCCHHHhCCCEEEEecCCc
Confidence 1123344889999998888
Q ss_pred HHHhhhc----CCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCceEEEeccCC
Q 044527 691 VPGALSN----LNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGFGFVFQKGS 766 (860)
Q Consensus 691 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~s 766 (860)
...++.. .+. ..++..+++..+.+++|.+|++|+++.+...+.++.++.. . +.+..+ ...+++++++|++
T Consensus 159 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~-~--~~~~~~--~~~~~~~~~~k~~ 232 (259)
T 2v25_A 159 TKKAIGEAAKKIGI-DVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS-E--ILPDSF--EPQSYGIVTKKDD 232 (259)
T ss_dssp HHHHHHHHHHHTTC-CCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE-E--ECSCCC--SEEEECCEEETTC
T ss_pred hHHHHHHHHHhcCC-ceeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC-C--cccccc--ccceeEEEEcCCC
Confidence 7766643 222 2256778899999999999999999999988887766544 2 445555 6678899999999
Q ss_pred c-chHHHHHHHHHHhhcchHHHHHHHHc
Q 044527 767 P-LVHDISRAIARLREEGTLAKIENVWF 793 (860)
Q Consensus 767 p-l~~~in~~i~~l~e~G~~~~~~~~~~ 793 (860)
| +.+.+|++|.++.++ ++++.+||.
T Consensus 233 ~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 233 PAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 7 999999999999999 899999985
No 74
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.81 E-value=7.7e-09 Score=100.74 Aligned_cols=183 Identities=10% Similarity=0.039 Sum_probs=134.3
Q ss_pred CccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccc------ccceeecc
Q 044527 482 TLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITAN------RSVYVDFT 555 (860)
Q Consensus 482 ~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~------r~~~~~fs 555 (860)
..++.|+.--|...+. |+++.+.+.. .|++.+..|++|++|++++++..+++ |...++|+
T Consensus 27 s~~yeGlatgl~~~f~---gi~~~i~~mr-----------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg 92 (231)
T 2ozz_A 27 TRLYEGLASGLKAQFD---GIPFYYAHMR-----------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELG 92 (231)
T ss_dssp SHHHHHHHHHHHHTTT---TSCEEEEECS-----------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECC
T ss_pred hhhhhHHHHHHHHHhc---CCcEEEEEcc-----------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcC
Confidence 4478999998888884 6544444442 68999999999999999999999999 99999999
Q ss_pred ccccccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccc
Q 044527 556 LPYTDMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ 635 (860)
Q Consensus 556 ~p~~~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (860)
.||+...-.++++++...
T Consensus 93 ~~yYv~~h~li~~~~~~~-------------------------------------------------------------- 110 (231)
T 2ozz_A 93 PHTYVGEHQLICRKGESG-------------------------------------------------------------- 110 (231)
T ss_dssp TTSSSCCEEEEEETTCGG--------------------------------------------------------------
T ss_pred CCccccCeEEEEeCCCcc--------------------------------------------------------------
Confidence 999977777888777521
Q ss_pred cccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHHhhhcCCCCCcCcccc-CCHHHH
Q 044527 636 REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPGALSNLNFKDSRLKKY-NSAEEY 714 (860)
Q Consensus 636 ~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 714 (860)
.-++||+..+|..+..+........++..+ .+..++
T Consensus 111 -------------------------------------------~ikrVGvd~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~ 147 (231)
T 2ozz_A 111 -------------------------------------------NVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHES 147 (231)
T ss_dssp -------------------------------------------GCCEEEECTTCHHHHHHHHHHHTTSCCEEEECCHHHH
T ss_pred -------------------------------------------ccEEEEecCCChhHHHHHhhhcCCCeEEEEECCHHHH
Confidence 116999999999888886533344566778 899999
Q ss_pred HHHHhcCCcEEEEc--chHHHHHHHhccCcccee--ecc---ccccccCceEEEeccCCc-chHHHHHHHHHHhhcchHH
Q 044527 715 ANALSMGSISAIVD--EIPYVRAFLSKYSAHYTT--AAA---KYTTSTNGFGFVFQKGSP-LVHDISRAIARLREEGTLA 786 (860)
Q Consensus 715 ~~~l~~g~~~~~i~--~~~~~~~~~~~~~~~l~~--~~~---~~~~~~~~~~~~~~k~sp-l~~~in~~i~~l~e~G~~~ 786 (860)
+..|.+|++||++. |..... .. . .+.. +.. .. ......++++|+++ +++.+|+.|. ...+-
T Consensus 148 i~~L~~G~IDA~Iwn~d~~~a~--~~--~-~l~~~~l~~~~~~~--~~~eavI~v~k~n~~L~~~ln~~I~----~~~v~ 216 (231)
T 2ozz_A 148 LQRIVKGDVDAVIWNVVAENEL--TM--L-GLEATPLTDDPRFL--QATEAVVLTRVDDYPMQQLLRAVVD----KHALL 216 (231)
T ss_dssp HHHHHHTSCCEEEEEC-CHHHH--HH--T-TEEEEECCSCHHHH--HTTCEEEEEETTCHHHHHHHHHHCC----HHHHH
T ss_pred HHHHHcCCccEEEEcCcchhhh--cC--C-Ccceeccccccccc--cCCceEEEEECCCHHHHHHHHHHhH----HHHHH
Confidence 99999999999999 776654 11 1 1211 111 22 33455699999986 8888887663 34555
Q ss_pred HHHHHHcC
Q 044527 787 KIENVWFN 794 (860)
Q Consensus 787 ~~~~~~~~ 794 (860)
.++++...
T Consensus 217 ~~Q~~V~~ 224 (231)
T 2ozz_A 217 AHQQRVVS 224 (231)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 56666655
No 75
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.62 E-value=1.4e-07 Score=98.84 Aligned_cols=213 Identities=12% Similarity=0.026 Sum_probs=141.1
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
.+||||+.. .++|+.+. ..+ .++++.|++++|. ++++++. .+|++++..|.+|+
T Consensus 4 ~~l~iG~~p-~~~p~~~~----------~~~----~~l~~~l~k~lG~--~ve~~~~---------~~~~~~i~al~~G~ 57 (310)
T 3n5l_A 4 PVINFGIIS-TESSQNLK----------SIW----EPFLKDMSQQTGY--QVKAFFA---------PDYAGIIQGMRFDK 57 (310)
T ss_dssp CEEEEEECC-SSCHHHHH----------HHH----HHHHHHHHHHHSS--EEEEECC---------SSHHHHHHHHHTTS
T ss_pred cEEEEEEec-CCCHHHHH----------HHH----HHHHHHHHHHhCC--CEEEEeC---------CCHHHHHHHHHcCC
Confidence 579999997 46676542 122 4899999999997 5555543 37999999999999
Q ss_pred ccEEEec-eeecc--cccceeecccccc-----ccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhcc
Q 044527 535 FDAAVGD-TTITA--NRSVYVDFTLPYT-----DMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIER 606 (860)
Q Consensus 535 ~Di~~~~-~~~t~--~r~~~~~fs~p~~-----~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~ 606 (860)
+|+++.+ ..... +|.....|+.++. .....+++++...
T Consensus 58 vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~---------------------------------- 103 (310)
T 3n5l_A 58 VDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSK---------------------------------- 103 (310)
T ss_dssp CSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCS----------------------------------
T ss_pred CCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCC----------------------------------
Confidence 9999755 33332 2333344543321 1123667776542
Q ss_pred ccCCCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhh----cCCc
Q 044527 607 PVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLA----SMDN 682 (860)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~----~~~~ 682 (860)
+..++++ ++++
T Consensus 104 -----------------------------------------------------------------i~sl~DL~~~~kgk~ 118 (310)
T 3n5l_A 104 -----------------------------------------------------------------IDSLEDMLANAKSLT 118 (310)
T ss_dssp -----------------------------------------------------------------CCSHHHHHHTGGGCE
T ss_pred -----------------------------------------------------------------CCCHHHHhhhcCCCE
Confidence 2223334 6778
Q ss_pred EEEe-cCCcH----HH-hh-hcCCCCC---cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc---Cccceeecc
Q 044527 683 IGSQ-LGSVV----PG-AL-SNLNFKD---SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY---SAHYTTAAA 749 (860)
Q Consensus 683 i~~~-~~~~~----~~-~~-~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~---~~~l~~~~~ 749 (860)
+++. .+++. .. ++ +..+... -+.+...+..+.+..|..|++|+.+.+...+.++.++. ..+++++..
T Consensus 119 ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~ 198 (310)
T 3n5l_A 119 FGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWK 198 (310)
T ss_dssp EEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEE
T ss_pred EEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEE
Confidence 8864 33321 12 12 3323321 12233467778999999999999999998888877764 136776654
Q ss_pred ccccccCceEEEeccCCc--chHHHHHHHHHHhhcchHHHHHHHHcC
Q 044527 750 KYTTSTNGFGFVFQKGSP--LVHDISRAIARLREEGTLAKIENVWFN 794 (860)
Q Consensus 750 ~~~~~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~~~~~ 794 (860)
.. ....++++++++.| +++.++++|..+.++|...++.+++-.
T Consensus 199 s~--~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g~ 243 (310)
T 3n5l_A 199 SP--LIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQW 243 (310)
T ss_dssp EE--EEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTTE
T ss_pred CC--CCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcCc
Confidence 33 33457899999954 999999999999999998888887643
No 76
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.57 E-value=2.9e-07 Score=96.71 Aligned_cols=213 Identities=13% Similarity=0.041 Sum_probs=140.3
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
..+|++|+.. ..+|... ...+ -.+++.|++++|. ++++.+. .+|++++..|.+|
T Consensus 13 ~~~l~~Gv~p-~~~~~~~----------~~~~----~~l~~~L~k~lG~--~ve~~~~---------~~~~~~i~aL~~G 66 (321)
T 3p7i_A 13 EKALNFGIIS-TESQQNL----------KPQW----TPFLQDMEKKLGV--KVNAFFA---------PDYAGIIQGMRFN 66 (321)
T ss_dssp -CCEEEEECC-SSCHHHH----------HHHH----HHHHHHHHHHHTS--CEEEECC---------SSHHHHHHHHHTT
T ss_pred CCcEEEEEec-CCCHHHH----------HHHH----HHHHHHHHHHHCC--CEEEEec---------CCHHHHHHHHHcC
Confidence 3689999996 3445443 1122 4799999999997 4555543 3799999999999
Q ss_pred cccEEEec-eeeccc--ccceeecccccc-----ccceEEEEecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhc
Q 044527 534 KFDAAVGD-TTITAN--RSVYVDFTLPYT-----DMGIGMIVPIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIE 605 (860)
Q Consensus 534 ~~Di~~~~-~~~t~~--r~~~~~fs~p~~-----~~~~~~lv~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~ 605 (860)
++|+++.+ ...... |.....|..|+. .....+++++...
T Consensus 67 ~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds~--------------------------------- 113 (321)
T 3p7i_A 67 KVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDSP--------------------------------- 113 (321)
T ss_dssp SCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTCS---------------------------------
T ss_pred CCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCCC---------------------------------
Confidence 99999753 444433 333344543321 1124677776652
Q ss_pred cccCCCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhhh----cCC
Q 044527 606 RPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKLA----SMD 681 (860)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~----~~~ 681 (860)
+..++++ +++
T Consensus 114 ------------------------------------------------------------------i~sl~DL~~~~kgk 127 (321)
T 3p7i_A 114 ------------------------------------------------------------------INNLNDLLAKRKDL 127 (321)
T ss_dssp ------------------------------------------------------------------CCSHHHHHHTGGGC
T ss_pred ------------------------------------------------------------------CCCHHHHHhhcCCC
Confidence 2233344 677
Q ss_pred cEEEe-cCCcH----HHh-h-hcCCCCCcC--ccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc---Cccceeecc
Q 044527 682 NIGSQ-LGSVV----PGA-L-SNLNFKDSR--LKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY---SAHYTTAAA 749 (860)
Q Consensus 682 ~i~~~-~~~~~----~~~-~-~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~---~~~l~~~~~ 749 (860)
++++. .+++. ... + +..+..... .+.+.+..+.+..|..|++|+.+.+...+..+.++. ..+++++..
T Consensus 128 ~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~ 207 (321)
T 3p7i_A 128 TFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWK 207 (321)
T ss_dssp EEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEE
Confidence 88863 33321 121 2 333333222 234566788999999999999999998888877653 236777765
Q ss_pred ccccccCceEEEeccCCc--chHHHHHHHHHHhhcchHHHHHHHHc
Q 044527 750 KYTTSTNGFGFVFQKGSP--LVHDISRAIARLREEGTLAKIENVWF 793 (860)
Q Consensus 750 ~~~~~~~~~~~~~~k~sp--l~~~in~~i~~l~e~G~~~~~~~~~~ 793 (860)
.. ....++++++|+.| +++.++.+|..+.++|...++.+++-
T Consensus 208 s~--~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 208 SP--LIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp CS--CBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred cC--CCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 43 34457899999954 99999999999999998888877664
No 77
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.24 E-value=1.4e-05 Score=83.08 Aligned_cols=206 Identities=12% Similarity=0.022 Sum_probs=129.9
Q ss_pred CceEEEEEEEec---CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDM---RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
..+.+||++.|. +.+.......+++.++++. ++++ .+.++..++....+....++++ ++++||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-------GRQL--LLADGKHSAEEERQAIQYLLDL-RCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT-------TCEE--EEECCTTSHHHHHHHHHHHHHT-TCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHhc-CCCEEEEecC
Confidence 346889999996 3444566777777777652 2444 4567777887777777777765 8988876433
Q ss_pred ChhHHHHHHHhhcC-CCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCC
Q 044527 117 TPTGAQILADLGSR-AKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNT 193 (860)
Q Consensus 117 ~s~~~~~~~~~~~~-~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~ 193 (860)
......+. .+.. .++|+|......+ . ..+..+.+++. ..+..+++++...|.++++++..+.. .+. ..
T Consensus 87 -~~~~~~~~-~l~~~~~iPvV~~~~~~~-~--~~~~~V~~d~~---~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~-~R 157 (296)
T 3brq_A 87 -FLSVDEID-DIIDAHSQPIMVLNRRLR-K--NSSHSVWCDHK---QTSFNAVAELINAGHQEIAFLTGSMDSPTSI-ER 157 (296)
T ss_dssp -SSCHHHHH-HHHHTCSSCEEEESCCCS-S--SGGGEECCCHH---HHHHHHHHHHHHTTCCSEEEECCCTTCHHHH-HH
T ss_pred -CCChHHHH-HHHhcCCCCEEEEccccC-C--CCCCEEEEchH---HHHHHHHHHHHHCCCceEEEEcCCCCCccHH-HH
Confidence 22222333 3444 7999999875433 2 12334455555 66778888887789999999986543 334 45
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
.+.+.+.+++.|+++.....+. .+.+..+....+.++.+ .++++|+ +.+...+..+++++++.|+..++-+
T Consensus 158 ~~gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 230 (296)
T 3brq_A 158 LAGYKDALAQHGIALNEKLIAN-GKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQV 230 (296)
T ss_dssp HHHHHHHHHTTTCCCCGGGEEC-CCSSHHHHHHHHHHHHTC--CCSEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHHHHHHcCCCCChhhEEe-CCCChhHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 6788899999997754321122 12333444455555543 3567765 4567778889999999997644433
No 78
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.16 E-value=5.1e-05 Score=79.20 Aligned_cols=198 Identities=14% Similarity=0.129 Sum_probs=125.0
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
.++.+||++.+.+++.-.+...|++ +++++.|.+.+.++.+.+.|+.+++....+...++.++ +|++||.... .
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~~-~- 79 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIAT-P- 79 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHT-CCSEEEEESH-H-
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhC-CCCEEEECCh-H-
Confidence 4578999885555544334444544 44555665556788888999999999888888888865 8999987544 3
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCccc----------ccceEeecCCCchhHHHHHHHHHHHhhC--CCcEEEEEEecCC
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSL----------TSYSIQIDQDDEASQSQARGISDFISVF--KWKEVILIHEDNT 187 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~l----------s~~~~r~~p~~~~~~~~~~ai~~~l~~~--~w~~v~ii~~~~~ 187 (860)
....+.. ...++|+|..+..++ .. .+.+..+. +. ..+....+++.+. |.+++++|+....
T Consensus 80 ~~~~~~~--~~~~iPvV~~~~~~~-~~~~~v~~~~~~~~~~~gv~--~~---~~~~~~~~~l~~~~Pg~~~I~~i~~~~~ 151 (302)
T 2qh8_A 80 TAQALVS--ATKTIPIVFTAVTDP-VGAKLVKQLEQPGKNVTGLS--DL---SPVEQHVELIKEILPNVKSIGVVYNPGE 151 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCT-TTTTSCSCSSSCCSSEEEEE--CC---CCHHHHHHHHHHHSTTCCEEEEEECTTC
T ss_pred HHHHHHh--cCCCcCEEEEecCCH-hhcCccccccCCCCCEEEEE--CC---cCHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence 2233333 267999998765444 21 11333332 11 1134445666555 8999999997654
Q ss_pred -CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcC
Q 044527 188 -WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLG 259 (860)
Q Consensus 188 -~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g 259 (860)
.+. ...+.+++.+++.|+++..... . ...+....++++.. ++++|++..+. .+...++.+.+.+
T Consensus 152 ~~~~-~r~~g~~~al~~~gi~~~~~~~-~----~~~~~~~~~~~l~~-~~dai~~~~D~-~a~g~~~~l~~~~ 216 (302)
T 2qh8_A 152 ANAV-SLMELLKLSAAKHGIKLVEATA-L----KSADVQSATQAIAE-KSDVIYALIDN-TVASAIEGMIVAA 216 (302)
T ss_dssp HHHH-HHHHHHHHHHHHTTCEEEEEEC-S----SGGGHHHHHHHHGG-GCSEEEECSCH-HHHTTHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHHcCCEEEEEec-C----ChHHHHHHHHHHhc-cCCEEEECCcH-hHHHHHHHHHHHH
Confidence 244 5678899999999998865432 2 23556667777764 78888775443 3433344444443
No 79
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.15 E-value=1.2e-05 Score=83.38 Aligned_cols=204 Identities=17% Similarity=0.056 Sum_probs=125.9
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
..+.+||++.|.+.+.......+++.++++ . ++++. +.++..++....+....++.+ +|++||.... ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~---~----g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~~ 74 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQK---H----HLHVA--VASSEENEDKQQDLIETFVSQ-NVSAIILVPV-KS 74 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGG---G----TCEEE--EEECTTCHHHHHHHHHHHHHT-TEEEEEECCS-SS
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHH---C----CCEEE--EEeCCCCHHHHHHHHHHHHHc-CccEEEEecC-CC
Confidence 456889999997222234445555555443 2 24544 456667777777777777766 8999887544 22
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l 197 (860)
....+..+ .++|+|......+ . ..+..+.+++. ..++.+++++...|.++|+++..... ... ...+.+
T Consensus 75 ~~~~~~~l---~~iPvV~~~~~~~-~--~~~~~V~~d~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~gf 144 (288)
T 2qu7_A 75 KFQMKREW---LKIPIMTLDRELE-S--TSLPSITVDNE---EAAYIATKRVLESTCKEVGLLLANPNISTTI-GRKNGY 144 (288)
T ss_dssp CCCCCGGG---GGSCEEEESCCCS-S--CCCCEEEECHH---HHHHHHHHHHHTSSCCCEEEEECCTTSHHHH-HHHHHH
T ss_pred ChHHHHHh---cCCCEEEEecccC-C--CCCCEEEECcH---HHHHHHHHHHHHcCCCcEEEEecCCCCCCHH-HHHHHH
Confidence 21222222 7899998875443 2 13344556666 77788888888889999999986533 333 456788
Q ss_pred HHHHhhCCceEeEEEec--cCCCC----ChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 198 FDSLHDNDIDIARRTSI--SLASS----THDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~--~~~~~----~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
++.+++.|+++.....+ . .+. +..+-...+.++.+.++++|+ +.+...+..+++++++.|+..++-+
T Consensus 145 ~~~l~~~g~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 217 (288)
T 2qu7_A 145 NKAISEFDLNVNPSLIHYSD-QQLGTNAQIYSGYEATKTLLSKGIKGIV-ATNHLLLLGALQAIKESEKEIKKDV 217 (288)
T ss_dssp HHHHHHTTCCCCGGGEEECC-SSCSHHHHHHHHHHHHHHHHHTTCCEEE-ECSHHHHHHHHHHHHHSSCCBTTTB
T ss_pred HHHHHHcCCCCCcceEEecc-CCccccCCHHHHHHHHHHHHhcCCCEEE-ECCcHHHHHHHHHHHHhCCCCCCce
Confidence 89999999765421111 1 112 222233344444333788875 4566778889999999997544433
No 80
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.12 E-value=6.2e-05 Score=77.95 Aligned_cols=205 Identities=8% Similarity=0.037 Sum_probs=127.0
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+.+||++.|... +.......+++.+.++.+ +++.+ .++..++....+....++++ ++++||.... .
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-------~~~~~--~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~-~ 73 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKG-------YTLIL--GNAWNNLEKQRAYLSMMAQK-RVDGLLVMCS-E 73 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHT-------CEEEE--EECTTCHHHHHHHHHHHHHT-TCSEEEEECS-C
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CeEEE--EcCCCChHHHHHHHHHHHhC-CCCEEEEEec-c
Confidence 34578999998543 334556677777776532 44443 56667777777777777765 8988875333 2
Q ss_pred hHHHHHHHhhc-CCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHH
Q 044527 119 TGAQILADLGS-RAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~~~~-~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
... .....+. ..++|+|......+ .. ++...+.+++. ..+..+++++...|.++|+++..+.. ... ...+
T Consensus 74 ~~~-~~~~~l~~~~~iPvV~~~~~~~-~~-~~~~~V~~d~~---~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~ 146 (289)
T 1dbq_A 74 YPE-PLLAMLEEYRHIPMVVMDWGEA-KA-DFTDAVIDNAF---EGGYMAGRYLIERGHREIGVIPGPLERNTGA-GRLA 146 (289)
T ss_dssp CCH-HHHHHHHHTTTSCEEEEECSSC-CS-SSCEEEEECHH---HHHHHHHHHHHHTTCCSEEEECCC------C-HHHH
T ss_pred CCH-HHHHHHHhccCCCEEEEccCCC-cc-CcCCEEEeCcH---HHHHHHHHHHHHCCCCeEEEEecCCccccHH-HHHH
Confidence 111 1222333 37999998875433 21 12344566666 77788888888789999999976532 344 5678
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCC
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKG 264 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~ 264 (860)
.+++.+++.|+++.....+. .+.+..+....+.++.+ .++++|+ +.+...+..+++++++.|+..++
T Consensus 147 g~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~ 215 (289)
T 1dbq_A 147 GFMKAMEEAMIKVPESWIVQ-GDFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRVPQ 215 (289)
T ss_dssp HHHHHHHHTTCCCCGGGBCC-CCSSHHHHHHHHHHHHTSSSCCSEEE-ESCHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHCCCCCChHHeEe-CCCCHHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 89999999997654221122 12233444455555544 3567765 45677888899999999975444
No 81
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.11 E-value=5.7e-05 Score=79.34 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=128.2
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
++||++.|..+........+++.++++.+ +++.+.. .+..++....+...+++.+ ++++||. |.. +...
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~g-------~~~~~~~-~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~-~~~~ 71 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKALG-------VDTKFFV-PQKEDINAQLQMLESFIAE-GVNGIAIAPSD-PTAV 71 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHHT-------CEEEEEC-CSSSCHHHHHHHHHHHHHT-TCSEEEECCSS-TTTT
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHcC-------CEEEEEC-CCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-hHHH
Confidence 68999988654344456667777766532 4554432 2357787777778888876 8988875 444 3332
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC--CCcEEEEEEecCC--CCCcCCHHHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF--KWKEVILIHEDNT--WGNDNTIPYL 197 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~~l 197 (860)
......+...++|+|......+ .. ..+..+.+++. ..++.+++++... |.++|+++..... ... ...+.+
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~V~~d~~---~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~-~R~~gf 145 (313)
T 2h3h_A 72 IPTIKKALEMGIPVVTLDTDSP-DS-GRYVYIGTDNY---QAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSL-QRIQGF 145 (313)
T ss_dssp HHHHHHHHHTTCCEEEESSCCT-TS-CCSCEEECCHH---HHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHH-HHHHHH
T ss_pred HHHHHHHHHCCCeEEEeCCCCC-Cc-ceeEEECcCHH---HHHHHHHHHHHHHcCCCCEEEEEECCCCCccHH-HHHHHH
Confidence 3334445567999999875443 21 12334556666 7778888888766 8899999987532 333 456788
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
++.+++.|+++...... +.+..+....++++.+. .+++|+. .+...+..+++++++.|+
T Consensus 146 ~~~l~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~ 206 (313)
T 2h3h_A 146 KDAIKDSEIEIVDILND---EEDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK 206 (313)
T ss_dssp HHHHTTSSCEEEEEEEC---SSCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCEEEEeecC---CCCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC
Confidence 99999999887653322 23444445555555443 4577654 455677889999999994
No 82
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.11 E-value=3.8e-05 Score=78.88 Aligned_cols=200 Identities=12% Similarity=0.061 Sum_probs=132.6
Q ss_pred EEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCC-eEEEEecCCChhH
Q 044527 43 VHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVD-LQAIICIGMTPTG 120 (860)
Q Consensus 43 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~-v~aviGp~~~s~~ 120 (860)
++||++.|-.. +.......+++.+.++. ++++.+...++..++....+....++.+ + +.+||-....+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA-------GVTLLHRSTKDDGDIAGQIQILSYHLSQ-APPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH-------TCEEEECCCSSTTCHHHHHHHHHHHHHH-SCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEEEEECCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCCCHHH
Confidence 58999998544 33456667777777664 2566655555667888888888888887 6 9888754320334
Q ss_pred HHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC----CCcEEEEEEecCC--CCCcCCH
Q 044527 121 AQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF----KWKEVILIHEDNT--WGNDNTI 194 (860)
Q Consensus 121 ~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~----~w~~v~ii~~~~~--~g~~~~~ 194 (860)
.......+...++|+|......+ .. +.+..+.+++. ..++.+++++... |.++++++..... ... ...
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~-~~-~~~~~V~~d~~---~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~-~R~ 146 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLA-GD-AHQGLVATDNY---AAGQLAARALLATLDLSKERNIALLRLRAGNASTD-QRE 146 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCS-SS-CSSEEEECCHH---HHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHH-HHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCC-CC-CcceEEccCHH---HHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHH-HHH
Confidence 44555566777999999875443 21 13344556666 7788888888776 8999999976533 233 457
Q ss_pred HHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 195 PYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 195 ~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
+.+++.+++. |+++.... . ...+.......+.++.+. ++++| ++.+...+..+++++++.|+
T Consensus 147 ~gf~~~l~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 147 QGFLDVLRKHDKIRIIAAP--Y-AGDDRGAARSEMLRLLKETPTIDGL-FTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHTTCTTEEEEECC--B-CCSSHHHHHHHHHHHHHHCSCCCEE-ECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCcEEEEEe--c-CCCcHHHHHHHHHHHHHhCCCceEE-EECCchhhhHHHHHHHHcCC
Confidence 8889999888 88876322 2 223444455555555433 45655 44566778889999999997
No 83
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.07 E-value=4.6e-05 Score=79.33 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=134.6
Q ss_pred eEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC--CCHHHHHHHHHHhhccCCeEEEE-ecCCC
Q 044527 42 EVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ--GDPFHALTTASNLMQNVDLQAII-CIGMT 117 (860)
Q Consensus 42 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~--~~~~~a~~~~~~li~~~~v~avi-Gp~~~ 117 (860)
.++||++.+... +.......+++.+.++.+ +++. +.+.. .++....+...+++.+ ++++|| .|..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~--~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~- 71 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELK-------VDLQ--ILAPPGANDVPKQVQFIESALAT-YPSGIATTIPS- 71 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHT-------CEEE--EECCSSSCCHHHHHHHHHHHHHT-CCSEEEECCCC-
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhC-------cEEE--EECCCCcCCHHHHHHHHHHHHHc-CCCEEEEeCCC-
Confidence 478999998763 335566777777777643 4554 44443 6888888888888877 788776 4555
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccc--cceEeecCCCchhHHHHHHHHHHHhhCC--CcEEEEEEecCC--CCCc
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLT--SYSIQIDQDDEASQSQARGISDFISVFK--WKEVILIHEDNT--WGND 191 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls--~~~~r~~p~~~~~~~~~~ai~~~l~~~~--w~~v~ii~~~~~--~g~~ 191 (860)
..........+...++|+|......+ ... ..+..+.+++. ..++.+++++...+ -++++++..+.. ...
T Consensus 72 ~~~~~~~~~~~~~~giPvV~~~~~~~-~~~~~~~~~~V~~D~~---~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~- 146 (297)
T 3rot_A 72 DTAFSKSLQRANKLNIPVIAVDTRPK-DKTKNPYLVFLGSDNL---LAGKKLGEKALELTPSAKRALVLNPQPGHIGLE- 146 (297)
T ss_dssp SSTTHHHHHHHHHHTCCEEEESCCCS-CTTTSCCSCEEECCHH---HHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHH-
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCc-cccccCcceEEccChH---HHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHH-
Confidence 44434455566777999999876555 322 13445566666 77888888887777 899999976543 223
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccC
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSK 263 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~ 263 (860)
...+.+++.+++.|+++..... . .........+.++.+ ..+++| ++.+...+..++++++++|+..+
T Consensus 147 ~R~~Gf~~~l~~~g~~~~~~~~-~---~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 147 KRAYGIKTILQDKGIFFEELDV-G---TDPNQVQSRVKSYFKIHPETNII-FCLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC-C---SCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHHHHHHHhcCCeEEEeec-C---CChHHHHHHHHHHHHhCCCCCEE-EEcCCcchHHHHHHHHhcCCccC
Confidence 4568899999999998876441 2 234444555555433 245655 45677788889999999886433
No 84
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.05 E-value=0.00017 Score=76.41 Aligned_cols=203 Identities=9% Similarity=-0.004 Sum_probs=130.3
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCC--eEEEEecCC
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVD--LQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~--v~aviGp~~ 116 (860)
.++.+||++.|..+ +.-.....+++.++++.+ +++ .+.++..++....+....++++ + +.+||....
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~l--~~~~~~~~~~~~~~~i~~l~~~-~~~vdgiIi~~~ 72 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVG-------LPY--VPLTTEGSSEKGIADIRALLQK-TGGNLVLNVDPN 72 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHT-------CCE--EEEECTTCHHHHHHHHHHHHHH-TTTCEEEEECCS
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcC-------CEE--EEecCCCCHHHHHHHHHHHHHC-CCCCCEEEEeCC
Confidence 34578999998533 333445566666655532 344 4456667777777777778776 7 999876443
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCccc-----c-cceEeecCCCchhHHHHHHHHHHHhh--CCCcEEEEEEecCC-
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSL-----T-SYSIQIDQDDEASQSQARGISDFISV--FKWKEVILIHEDNT- 187 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~l-----s-~~~~r~~p~~~~~~~~~~ai~~~l~~--~~w~~v~ii~~~~~- 187 (860)
...........+...++|+|......+ .. . ..+..+.+++. ..++.++++|.. .|.++|+++.....
T Consensus 73 ~~~~~~~~~~~~~~~~iPvV~~~~~~~-~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~~~G~~~I~~i~g~~~~ 148 (332)
T 2rjo_A 73 DSADARVIVEACSKAGAYVTTIWNKPK-DLHPWDYNPNYVAHLSYDGV---AYGEETATQLFKSMGGKGGVVALGGIFSN 148 (332)
T ss_dssp SHHHHHHHHHHHHHHTCEEEEESCCCT-TCCGGGGTTTEEEEEECCHH---HHHHHHHHHHHHHTTTCEEEEEEECCTTC
T ss_pred CHHHHHHHHHHHHHCCCeEEEECCCCC-cccchhcccceeEEEccChH---HHHHHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 133322344445567999999875544 31 1 23445666666 777888888876 69999999986533
Q ss_pred -CCCcCCHHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhcC---CCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 188 -WGNDNTIPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKSL---DTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 188 -~g~~~~~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~---~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
... ...+.+++.+++. |+++.... . .+.+..+....+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 149 ~~~~-~R~~Gf~~al~~~pgi~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~ 222 (332)
T 2rjo_A 149 VPAI-ERKAGLDAALKKFPGIQLLDFQ--V-ADWNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA 222 (332)
T ss_dssp HHHH-HHHHHHHHHHHTCTTEEEEEEE--E-CTTCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB
T ss_pred ccHH-HHHHHHHHHHHhCCCcEEEeec--c-CCCCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 233 4577889999998 98876432 2 223444444555555433 456654 45677788899999999974
No 85
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.03 E-value=0.00015 Score=76.12 Aligned_cols=196 Identities=8% Similarity=-0.014 Sum_probs=122.5
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEe-cCCCCHHHHHHHHHHhhccCCeEEEE-ecCCChhH
Q 044527 44 HVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSR-DSQGDPFHALTTASNLMQNVDLQAII-CIGMTPTG 120 (860)
Q Consensus 44 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~~s~~ 120 (860)
+||++.|..+ +.......+++.++++.+ ++ +.+. ++..++....+....++.+ +|.+|| .|.. +..
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g-------~~--~~~~~~~~~d~~~q~~~i~~li~~-~vdgiii~~~~-~~~ 73 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALG-------ID--VTYDGPTEPSVSGQVQLVNNFVNQ-GYDAIIVSAVS-PDG 73 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHT-------CE--EEECCCSSCCHHHHHHHHHHHHHT-TCSEEEECCSS-SST
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhC-------CE--EEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-HHH
Confidence 6999998654 334456667777776643 33 4454 4678888888888888876 888865 5655 443
Q ss_pred HHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhh---CCCcEEEEEEecCC--CCCcCCHH
Q 044527 121 AQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISV---FKWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 121 ~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~---~~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
.......+...+||+|.+....+ .-....+....++. ..++..+++|.. .|-++++++..... ... ...+
T Consensus 74 ~~~~~~~a~~~gipvV~~d~~~~-~~~~~~~v~~~D~~---~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~-~r~~ 148 (316)
T 1tjy_A 74 LCPALKRAMQRGVKILTWDSDTK-PECRSYYINQGTPK---QLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQN-QWVK 148 (316)
T ss_dssp THHHHHHHHHTTCEEEEESSCCC-GGGCSEEEESCCHH---HHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHH-HHHH
T ss_pred HHHHHHHHHHCcCEEEEecCCCC-CCCceEEEecCCHH---HHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHH-HHHH
Confidence 34445556678999999874333 21112332245555 667777777755 57889999985432 233 4567
Q ss_pred HHHHHHhhC--CceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcC
Q 044527 196 YLFDSLHDN--DIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLG 259 (860)
Q Consensus 196 ~l~~~~~~~--g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~g 259 (860)
.+++.+++. ++++..... ...+.......++++.++ ++++|+ +.+...+..+++++++.|
T Consensus 149 g~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nD~~A~g~~~al~~~G 212 (316)
T 1tjy_A 149 EAKAKISQEHPGWEIVTTQF---GYNDATKSLQTAEGIIKAYPDLDAII-APDANALPAAAQAAENLK 212 (316)
T ss_dssp HHHHHHHHHCTTEEEEEEEE---CTTCHHHHHHHHHHHHHHCSSCCEEE-ECSTTHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCcEEEEecc---CCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCccHHHHHHHHHHcC
Confidence 788888765 556554322 123444445555555433 456554 455667888899999998
No 86
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.03 E-value=0.00016 Score=75.35 Aligned_cols=202 Identities=13% Similarity=-0.023 Sum_probs=126.6
Q ss_pred ceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEE-ecCCCh
Q 044527 41 DEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAII-CIGMTP 118 (860)
Q Consensus 41 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~~s 118 (860)
++.+||++.|..+ +.......+++.+.++.+ +++.+ +.++..++....+...+++.+ ++.+|| .|.. +
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g-------~~~~~-~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~~~-~ 72 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFN-------LNASQ-VGPSSTDAPQQVKIIEDLIAR-KVDAITIVPND-A 72 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTT-------EEEEE-ECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSC-H
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcC-------CEEEE-ECCCCCCHHHHHHHHHHHHHc-CCCEEEEecCC-h
Confidence 4689999998654 335566777777777642 34432 234567888777778888876 898866 4555 4
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhh-CCCc-EEEEEEecCC--CCCcCCH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISV-FKWK-EVILIHEDNT--WGNDNTI 194 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~-~~w~-~v~ii~~~~~--~g~~~~~ 194 (860)
.........+...++|+|....... . ...+..+..++. ..+..+++++.. .|.+ +++++..... ... ...
T Consensus 73 ~~~~~~~~~~~~~~ipvV~~~~~~~-~-~~~~~~v~~d~~---~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~-~R~ 146 (303)
T 3d02_A 73 NVLEPVFKKARDAGIVVLTNESPGQ-P-SANWDVEIIDNE---KFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHN-LWA 146 (303)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCTTC-T-TCSEEEESSCHH---HHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHH-HHH
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCC-C-CCceEEEecCHH---HHHHHHHHHHHHHhCcCceEEEEecCCCCccHH-HHH
Confidence 4444444556677999999875411 1 123444566666 777888888866 7887 9999875432 223 456
Q ss_pred HHHHHHHhhCC--ceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 195 PYLFDSLHDND--IDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 195 ~~l~~~~~~~g--~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
+.+++.+++.+ +++... .+. ......+....+.++.++ .+++|+ +.+...+..+++++++.|+.
T Consensus 147 ~gf~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~ 214 (303)
T 3d02_A 147 DLLVKYQKEHYPDMHEVTR-RMP-VAESVDDSRRTTLDLMKTYPDLKAVV-SFGSNGPIGAGRAVKEKRAK 214 (303)
T ss_dssp HHHHHHHHHHCTTEEESSS-CBS-CTTCHHHHHHHHHHHHHHCTTEEEEE-ESSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhhCCCCEEEEe-ecC-CCCCHHHHHHHHHHHHHhCCCCCEEE-EeCCcchhHHHHHHHhcCCC
Confidence 77888888755 444321 112 123344455556665443 345554 44556788899999999974
No 87
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.02 E-value=3.7e-05 Score=79.09 Aligned_cols=204 Identities=9% Similarity=-0.004 Sum_probs=114.7
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHHH
Q 044527 44 HVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQ 122 (860)
Q Consensus 44 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~~ 122 (860)
+||++.|... +.-.....+++-+.++ . + +++ .+.++..++....+....++.+ ++++||.... ....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~---~-g---~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~~~~- 68 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLE---Q-R---YDL--ALFPILSLARLKRYLENTTLAY-LTDGLILASY-DLTE- 68 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGG---G-T---CEE--EECCCCSCCCCC---------C-CCSEEEEESC-CCC--
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHH---C-C---CEE--EEEeCCCchhhHHHHHHHHHhC-CCCEEEEecC-CCCH-
Confidence 4899988533 2233344444444433 2 2 444 4455555555444555566655 7888775333 2222
Q ss_pred HHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecC-C---CCC-c-CCHHH
Q 044527 123 ILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDN-T---WGN-D-NTIPY 196 (860)
Q Consensus 123 ~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~-~---~g~-~-~~~~~ 196 (860)
.....+...++|+|......+ . +..+..++. ..++.+++++...|.++++++.... . ... . ...+.
T Consensus 69 ~~~~~~~~~~iPvV~~~~~~~-~----~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~g 140 (276)
T 2h0a_A 69 RFEEGRLPTERPVVLVDAQNP-R----YDSVYLDNR---LGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAG 140 (276)
T ss_dssp -----CCSCSSCEEEESSCCT-T----SEEEEECSH---HHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEeccCC-C----CCEEEEccH---HHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHH
Confidence 333455668999999875444 2 345566776 7788888988888999999998765 3 222 1 13567
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+++.+++.|+++.....+. .+.+..+-...+.++.+. .+++|+ +++...+..+++++++.|+..++-+.++
T Consensus 141 f~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 213 (276)
T 2h0a_A 141 FQEALKEAGRPFSPDRLYI-TRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRVL 213 (276)
T ss_dssp HHHHHHHTTCCCCGGGEEE-ECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEEE
T ss_pred HHHHHHHcCCCCChHHeee-cCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 8889999987653211111 112334444555555443 467766 6677788899999999997655444443
No 88
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.01 E-value=0.00012 Score=75.62 Aligned_cols=203 Identities=13% Similarity=0.027 Sum_probs=128.9
Q ss_pred ceEEEEEEEecCC---cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 41 DEVHVGIILDMRS---WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 41 ~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
++.+||++.|..+ +.......+++.++++.+ +++.+...|+..++....+....++++ ++++||.....
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~ 75 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYE-------IKLEFMAPEKEEDYLVQNELIEEAIKR-KPDVILLAAAD 75 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHT-------CEEEECCCSSTTCHHHHHHHHHHHHHT-CCSEEEECCSC
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcC-------CEEEEecCCCCCCHHHHHHHHHHHHHh-CCCEEEEeCCC
Confidence 3568999998644 334556667777666542 555554444467777777777777776 89988764330
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhh-CC-CcEEEEEEecCC--CCCcCC
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISV-FK-WKEVILIHEDNT--WGNDNT 193 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~-~~-w~~v~ii~~~~~--~g~~~~ 193 (860)
..........+...++|+|......+ .. +.+..+.+++. ..++.+++++.. .| .++|+++..... ... ..
T Consensus 76 ~~~~~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~-~R 149 (289)
T 3brs_A 76 YEKTYDAAKEIKDAGIKLIVIDSGMK-QD-IADITVATDNI---QAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAM-DR 149 (289)
T ss_dssp TTTTHHHHTTTGGGTCEEEEESSCCS-SC-CCSEEEECCHH---HHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHH-HH
T ss_pred hHHhHHHHHHHHHCCCcEEEECCCCC-CC-cceEEEeeChH---HHHHHHHHHHHHHcCCCceEEEEECCCCCccHH-HH
Confidence 32222334455667999999875443 21 13455666666 777878888766 46 899999986533 233 45
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
.+.+++.+++.|..+.... . .+.+..+....+.++.+. .+++|+ +.+...+..+++++++.|+.
T Consensus 150 ~~gf~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 215 (289)
T 3brs_A 150 EEGLKIGLSDDSNKIEAIY--Y-CDSNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE 215 (289)
T ss_dssp HHHHHHHHGGGGGGEEEEE--E-CTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCcEEeee--c-CCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC
Confidence 6788899998887644322 2 223444444555555433 356654 45677888899999999974
No 89
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.01 E-value=0.00015 Score=75.16 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=124.0
Q ss_pred EEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~ 121 (860)
.+||++.|..+ +.......+++.++++. ++++ .+.++..++....+....++.+ ++++||.........
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL-------GYEA--TIFDSQNDTAKESAHFDAIIAA-GYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEecCChHHH
Confidence 57999998643 33455666777766652 2444 4566677887777777777776 899887643302222
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEe-ecCCCchhHHHHHHHHHHHhhC------CCcE--EEEEEecCC--CCC
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQ-IDQDDEASQSQARGISDFISVF------KWKE--VILIHEDNT--WGN 190 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r-~~p~~~~~~~~~~ai~~~l~~~------~w~~--v~ii~~~~~--~g~ 190 (860)
......+...++|+|......+ .. +.+.. +.+++. ..++.+++++... |.++ ++++..... ...
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~~V~~D~~---~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGIN-AR-GLAVAQIYSDNY---YGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS-CS-SSSSEEEEECHH---HHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCC-CC-CceEEEEeCCHH---HHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 2333445567999999875444 21 12223 556666 6677777877665 7888 777765432 233
Q ss_pred cCCHHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 191 DNTIPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 191 ~~~~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
...+.+++.+++. |+++.... . .+.+..+-...++++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 148 -~R~~gf~~~l~~~~g~~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 -DRSNGFHSVVDQYPEFKMVAQQ--S-AEFDRDTAYKVTEQILQAHPEIKAIW-CGNDAMALGAMKACEAAGR 215 (290)
T ss_dssp -HHHHHHHHHHTTSTTEEEEEEE--E-CTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhCCCCEEEEec--c-CCCCHHHHHHHHHHHHHhCCCCcEEE-ECCchHHHHHHHHHHHCCC
Confidence 4567888999998 88765422 1 12333333444555433 3567765 4567778889999999996
No 90
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.01 E-value=0.00015 Score=75.83 Aligned_cols=206 Identities=13% Similarity=0.089 Sum_probs=125.9
Q ss_pred eEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 42 EVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 42 ~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
+++||++.|..+. .......+++.+.++.+ +++ .+.++..++....+....++.+ +|++||-.......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~l--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG-------ITL--KIADGQQKQENQIKAVRSFVAQ-GVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHT-------CEE--EEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcC-------CEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhh
Confidence 4789999997543 24455666666665532 444 4456667777777777777776 79888764330221
Q ss_pred HHHHHHhhcCCCCcEEecccCCCcccc-c-ceEeecCCCchhHHHHHHHHHHHhhCC---CcEEEEEEecCC--CCCcCC
Q 044527 121 AQILADLGSRAKIPIISLFTTLPNSLT-S-YSIQIDQDDEASQSQARGISDFISVFK---WKEVILIHEDNT--WGNDNT 193 (860)
Q Consensus 121 ~~~~~~~~~~~~ip~Is~~a~~~~~ls-~-~~~r~~p~~~~~~~~~~ai~~~l~~~~---w~~v~ii~~~~~--~g~~~~ 193 (860)
.......+...++|+|......+ ... + .+..+..++. ..++.+++.|...| -++|+++..... ... ..
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~-~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~-~R 146 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSID-VKDKSLYMTTVTADNI---LEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAI-DR 146 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCC-CSCGGGSSEEEECCHH---HHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHH-HH
T ss_pred HHHHHHHHHHCCCCEEEecCCCC-CCCccceEEEEecCHH---HHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHH-HH
Confidence 12233445567999998875443 221 1 3445566665 66777777776655 789999986533 223 45
Q ss_pred HHHHHHHHhhCCc-eEeEEEeccCCCCChHHHHHHHHhhhc-----CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 194 IPYLFDSLHDNDI-DIARRTSISLASSTHDQIIEKLSMLKS-----LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 194 ~~~l~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
.+.+++.+++.|. ++.... . .+....+-...++++.+ ..+++|+ +.+...+..+++++++.|+..++-+
T Consensus 147 ~~Gf~~al~~~g~~~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di 221 (306)
T 2vk2_A 147 KKGFAEAIKNAPNIKIIRSQ--S-GDFTRSKGKEVMESFIKAENNGKNICMVY-AHNDDMVIGAIQAIKEAGLKPGKDI 221 (306)
T ss_dssp HHHHHHHTTTCTTEEEEEEE--E-CTTCHHHHHHHHHHHHHHTTTTTTCCEEE-ESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred HHHHHHHHhhCCCeEEEEec--c-CCCcHHHHHHHHHHHHHhCCCCCCeeEEE-ECCchHHHHHHHHHHHcCCCCCCCe
Confidence 6788899988885 433221 1 12333333344444432 3567764 4567778889999999997544433
No 91
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=97.99 E-value=0.00012 Score=75.94 Aligned_cols=202 Identities=11% Similarity=-0.004 Sum_probs=131.9
Q ss_pred CceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEE-ecCCC
Q 044527 40 SDEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAII-CIGMT 117 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~~ 117 (860)
.++-+||++.|..+. .......+++.+.++.+ ++ +.+.++..++....+....++.+ ++++|| .|..
T Consensus 3 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~--~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~- 71 (291)
T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLG-------GT--AIALDAGRNDQTQVSQIQTLIAQ-KPDAIIEQLGN- 71 (291)
T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTT-------CE--EEEEECTTCHHHHHHHHHHHHHH-CCSEEEEESSC-
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CE--EEEEcCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-
Confidence 345789999996442 23445566666665532 34 44556677887777777778776 888876 5655
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhh--CCCcEEEEEEecCCC--CCcCC
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISV--FKWKEVILIHEDNTW--GNDNT 193 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~--~~w~~v~ii~~~~~~--g~~~~ 193 (860)
+.........+...++|+|......+ . .+..+..++. ..+..+++++.. .|-++++++...... .. ..
T Consensus 72 ~~~~~~~~~~~~~~~iPvV~~~~~~~-~---~~~~V~~D~~---~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~-~R 143 (291)
T 3l49_A 72 LDVLNPWLQKINDAGIPLFTVDTATP-H---AINNTTSNNY---SIGAELALQMVADLGGKGNVLVFNGFYSVPVCK-IR 143 (291)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESCCCT-T---CSEEEEECHH---HHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHH-HH
T ss_pred hhhhHHHHHHHHHCCCcEEEecCCCC-C---cCceEecChH---HHHHHHHHHHHHHcCCCceEEEEeCCCCCchHH-HH
Confidence 55566666677778999999875443 2 2334556666 777888888877 899999999754332 22 34
Q ss_pred HHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhcC-----CCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 194 IPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKSL-----DTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 194 ~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~-----~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
.+.+++.+++. |+++.....+.....+.......+.++.+. ++++| ++.+...+..+++++++.|+.
T Consensus 144 ~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 216 (291)
T 3l49_A 144 YDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAI-WACWDVPMIGATQALQAAGRT 216 (291)
T ss_dssp HHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEE-EECCCchHHHHHHHHHHcCCC
Confidence 67888999888 677544332220111223334445554333 56776 466778888999999999974
No 92
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=97.97 E-value=0.00021 Score=73.76 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=125.3
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+.+||++.|..+ +.......+++.+.++. ++++. +.++..++....+....++.+ ++++||.... .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~ 74 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKN-------GYRIL--LCNTESDLARSRSCLTLLSGK-MVDGVITMDA-L 74 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHTHHHHTT-CCSEEEECCC-G
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEeCC-C
Confidence 34578999998533 33445556666655542 24554 345556776666666666665 8998886444 3
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 196 (860)
.....+.. +. .++|+|......+ . ..+..+..++. ..+..+++.+...|.++|+++..... ... ...+.
T Consensus 75 ~~~~~~~~-l~-~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~g 145 (285)
T 3c3k_A 75 SELPELQN-II-GAFPWVQCAEYDP-L--STVSSVSIDDV---AASEYVVDQLVKSGKKRIALINHDLAYQYAQ-HRESG 145 (285)
T ss_dssp GGHHHHHH-HH-TTSSEEEESSCCT-T--SSSCEEECCHH---HHHHHHHHHHHHTTCCCEEEEECCTTSHHHH-HHHHH
T ss_pred CChHHHHH-Hh-cCCCEEEEccccC-C--CCCCEEEEChH---HHHHHHHHHHHHcCCCeEEEEeCCCccccHH-HHHHH
Confidence 22233333 34 8999999875433 2 12333455555 66777888887779999999987643 233 45677
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHh--hhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSM--LKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~--i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+++.+++.|+++. ...-. .+..+-...+.+ +.+. .+++|+ +.+...+..+++++++.|+..++-+.++
T Consensus 146 f~~~l~~~g~~~~-~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 146 YLNRLKFHGLDYS-RISYA---ENLDYMAGKLATFSLLKSAVKPDAIF-AISDVLAAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp HHHHHHHHTCCCC-EEEEC---SSSSHHHHHHHHHHHHSSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCce-EeecC---CChHHHHHHHHHHHHHcCCCCCeEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8889988887654 11111 122223344444 4333 567765 4667778889999999997655444443
No 93
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=97.94 E-value=0.00019 Score=74.43 Aligned_cols=207 Identities=11% Similarity=0.050 Sum_probs=127.9
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+-+||++.|... +.-.....+++.+.++. + +++. +.++..++....+....++.+ +|++||-... .
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~----g---~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~-~ 86 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR----G---YQLL--IACSEDQPDNEMRCIEHLLQR-QVDAIIVSTS-L 86 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT----T---CEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCS-S
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC----C---CEEE--EEcCCCCHHHHHHHHHHHHHc-CCCEEEEeCC-C
Confidence 34678999998533 32344555555555442 2 4544 455666777666666777765 8988875433 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 196 (860)
.........+...++|+|......+ . ..+..+..++. ..+..+++.+...|.++|+++..... ... ...+.
T Consensus 87 ~~~~~~~~~~~~~~iPvV~~~~~~~-~--~~~~~V~~d~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~G 159 (293)
T 2iks_A 87 PPEHPFYQRWANDPFPIVALDRALD-R--EHFTSVVGADQ---DDAEMLAEELRKFPAETVLYLGALPELSVSF-LREQG 159 (293)
T ss_dssp CTTCHHHHTTTTSSSCEEEEESCCC-T--TTCEEEEECHH---HHHHHHHHHHHTSCCSSEEEEEECTTSHHHH-HHHHH
T ss_pred CCcHHHHHHHHhCCCCEEEECCccC-c--CCCCEEEecCH---HHHHHHHHHHHHCCCCEEEEEecCcccccHH-HHHHH
Confidence 2222233455678999998875433 2 12334556666 67777888888889999999987643 233 45678
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
+++.+++.|++..... . .+.+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 160 f~~~l~~~g~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 229 (293)
T 2iks_A 160 FRTAWKDDPREVHFLY--A-NSYEREAAAQLFEKWLETHPMPQALF-TTSFALLQGVMDVTLRRDGKLPSDLAI 229 (293)
T ss_dssp HHHHHTTCCCCEEEEE--E-SSSCHHHHHHHHHHHTTTSCCCSEEE-ESSHHHHHHHHHHHHHHHSSCCSSCEE
T ss_pred HHHHHHHcCCCccEEE--c-CCCChhhHHHHHHHHHhcCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 8899999987443221 1 123344444555555443 467664 456777888999999999764443333
No 94
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=97.92 E-value=0.00018 Score=74.44 Aligned_cols=206 Identities=14% Similarity=0.133 Sum_probs=127.7
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+.+||++.|... +.......+++.+.++. ++++. +.++..++....+....++.+ +|++||-... .
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~-~ 82 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY-------KYNII--LSNSDQNMEKELHLLNTMLGK-QVDGIVFMGG-N 82 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCS-C
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc-------CCEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEecC-C
Confidence 44678999998543 33344555666555542 24554 346667777666667777765 8988875332 1
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecC-C--CCCcCCHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDN-T--WGNDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~ 195 (860)
.....+. .+...++|+|......+ . ..+..+..++. .-++.++++|...|.++++++.... . ... ...+
T Consensus 83 ~~~~~~~-~l~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~ 154 (289)
T 2fep_A 83 ITDEHVA-EFKRSPVPIVLAASVEE-Q--EETPSVAIDYE---QAIYDAVKLLVDKGHTDIAFVSGPMAEPINRS-KKLQ 154 (289)
T ss_dssp CCHHHHH-HHHHSSSCEEEESCCCT-T--CCSCEEECCHH---HHHHHHHHHHHHTTCSSEEEEESCTTSHHHHT-THHH
T ss_pred CCHHHHH-HHHhcCCCEEEEccccC-C--CCCCEEEECcH---HHHHHHHHHHHHCCCCeEEEEeCCccccccHH-HHHH
Confidence 1222233 33467999999875433 2 12233455655 6778888888888999999998764 3 344 6678
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
.+++.+++.|+++.....+. .+.+..+-...++++.+. .+++|+ +.+...+..+++++++.|+..++-+
T Consensus 155 Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di 225 (289)
T 2fep_A 155 GYKRALEEANLPFNEQFVAE-GDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGIIHAAQDQGLSIPEDL 225 (289)
T ss_dssp HHHHHHHHTTCCCCGGGEEE-CCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHcCCCCChheEee-CCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCCe
Confidence 89999999997654211111 123344444555555443 567765 4567778899999999997544433
No 95
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=97.92 E-value=0.00033 Score=72.84 Aligned_cols=187 Identities=13% Similarity=0.125 Sum_probs=120.4
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
.++++||++--...+.--..+.|++ +++++.|...+..+++.+.|.++|+..+.+.+.+++++ ++++|++-.+ .
T Consensus 6 ~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~-~~DlIiai~t--~ 79 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIAT--P 79 (302)
T ss_dssp -CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTT-CCSEEEEESH--H
T ss_pred cCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhc-CCcEEEEcCC--H
Confidence 5689999876544332123344554 45666776666889999999999999999999999986 8999987433 4
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCccccc----------ceEeecCCCchhHHHHHHHHHHHhh-C-CCcEEEEEEecCC
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTS----------YSIQIDQDDEASQSQARGISDFISV-F-KWKEVILIHEDNT 187 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~----------~~~r~~p~~~~~~~~~~ai~~~l~~-~-~w~~v~ii~~~~~ 187 (860)
++.+++. ...++|+|-.+.++| .-.. ++.-+.-. . . .+.-.+++++ + +.++|+++|+..+
T Consensus 80 aa~a~~~--~~~~iPVVf~~v~dp-~~~~l~~~~~~~g~nvtGv~~~-~---~-~~~~l~l~~~l~P~~k~vgvi~~~~~ 151 (302)
T 3lkv_A 80 TAQALVS--ATKTIPIVFTAVTDP-VGAKLVKQLEQPGKNVTGLSDL-S---P-VEQHVELIKEILPNVKSIGVVYNPGE 151 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCT-TTTTSCSCSSSCCSSEEEEECC-C---C-HHHHHHHHHHHSTTCCEEEEEECTTC
T ss_pred HHHHHHh--hcCCCCeEEEecCCc-chhhhcccccCCCCcEEEEECC-c---C-HHHHHHHHHHhCCCCCEEEEEeCCCc
Confidence 4455443 345799998777766 3321 33333211 1 1 1223344443 2 6789999998765
Q ss_pred CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH
Q 044527 188 WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA 246 (860)
Q Consensus 188 ~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~ 246 (860)
-+.....+.+++.+++.|++++.... ....+....++.+. .+.+++++..+..
T Consensus 152 ~~s~~~~~~~~~~~~~~g~~~v~~~~-----~~~~~~~~~~~~l~-~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 152 ANAVSLMELLKLSAAKHGIKLVEATA-----LKSADVQSATQAIA-EKSDVIYALIDNT 204 (302)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEC-----SSGGGHHHHHHHHH-TTCSEEEECSCHH
T ss_pred ccHHHHHHHHHHHHHHcCCEEEEEec-----CChHHHHHHHHhcc-CCeeEEEEeCCcc
Confidence 33214567888899999999876432 33456666666654 4578888776543
No 96
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=97.91 E-value=0.00062 Score=72.59 Aligned_cols=207 Identities=14% Similarity=0.040 Sum_probs=134.4
Q ss_pred eEEEEEEEecCCc--chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhcc-CCeEEEEecCCCh
Q 044527 42 EVHVGIILDMRSW--TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQN-VDLQAIICIGMTP 118 (860)
Q Consensus 42 ~i~IG~l~~~~~~--~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~~s 118 (860)
..+||++.|.... .-.....+++-+.++.+ +++. +.+...++....+...+++.+ +++++||-... .
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g-------~~~~--~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~-~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLG-------LDLR--ILYAERDPQNTLQQARELFQGRDKPDYLMLVNE-Q 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHHHSSSCCSEEEEECC-S
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcC-------CeEE--EEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCc-h
Confidence 3689999997543 34556677777766642 4444 446778888888888888885 57887764334 4
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCccccc------------ceEeecCCCchhHHHHHHHHHHHhhCC------C-cEE
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTS------------YSIQIDQDDEASQSQARGISDFISVFK------W-KEV 179 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~------------~~~r~~p~~~~~~~~~~ai~~~l~~~~------w-~~v 179 (860)
.........+...+||+|......+ .... ++..+.+++. ..++.+++.|...+ - +++
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~g~~~~~g~~~~i 148 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLT-LDQRELIGQSRQNYSDWIGSMVGDDE---EAGYRMLKELLHKLGPVPAGHGIEL 148 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCC-TTTC------------CEEEEECCHH---HHHHHHHHHHHHHHCCCCSSCCEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCC-hHHHhhhcCCchhccceeeeecCChH---HHHHHHHHHHHHHhhhhcCCCCceE
Confidence 4555666678889999999876554 3220 2566666666 77788888876655 4 799
Q ss_pred EEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHH
Q 044527 180 ILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNA 255 (860)
Q Consensus 180 ~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a 255 (860)
+++..... ... ...+.+++.+++.|. +.....+. ...+.......+.++.+. .+++| ++++...+..+++++
T Consensus 149 ~~i~g~~~~~~~~-~R~~Gf~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~L~~~~~~~aI-~~~~d~~a~g~~~al 224 (350)
T 3h75_A 149 LAFSGLKVTPAAQ-LRERGLRRALAEHPQ-VHLRQLVY-GEWNRERAYRQAQQLLKRYPKTQLV-WSANDEMALGAMQAA 224 (350)
T ss_dssp EEEESCTTSHHHH-HHHHHHHHHHHHCTT-EEEEEEEE-CTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHH-HHHHHHHHHHHHCCC-eEEEEEee-CCCcHHHHHHHHHHHHHhCCCcCEE-EECChHHHHHHHHHH
Confidence 99976533 222 456788899999886 22222222 223444444555555433 34444 456777888999999
Q ss_pred HHcCCccCCeE
Q 044527 256 KKLGMMSKGYV 266 (860)
Q Consensus 256 ~~~gl~~~~~~ 266 (860)
+++|+..++-+
T Consensus 225 ~~~G~~vP~di 235 (350)
T 3h75_A 225 RELGRKPGTDL 235 (350)
T ss_dssp HHTTCCBTTTB
T ss_pred HHcCCCCCCCe
Confidence 99997644433
No 97
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=97.90 E-value=6.2e-05 Score=78.01 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=113.4
Q ss_pred CceEEEEEEEecC-CcchhhHHHHHHHHHHHHHhccCCcccEEEEEEe-cCCCCHHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 40 SDEVHVGIILDMR-SWTGKITNSCISMAIADFYAVNTHCKTRLILHSR-DSQGDPFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 40 ~~~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
..+.+||++.|.. .+.......+++.+.++ .+ +++.+ . ++..++....+....++.+ ++++||....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~----~g---~~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~- 74 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHK----NG---YNLII--VYSGSADPEEQKHALLTAIER-PVMGILLLSI- 74 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHT----TT---CEEEE--EC----------CHHHHHHSS-CCSEEEEESC-
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHH----cC---CeEEE--EeCCCCCHHHHHHHHHHHHhc-CCCEEEEecc-
Confidence 3457899999853 33334445555555443 22 45543 4 5555555555555666665 8988775333
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHH
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
.... .....+...++|+|......+ .. +..+.+++. ..+..+++++...|.++++++..... ... ...+
T Consensus 75 ~~~~-~~~~~l~~~~iPvV~~~~~~~-~~---~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~ 145 (290)
T 3clk_A 75 ALTD-DNLQLLQSSDVPYCFLSMGFD-DD---RPFISSDDE---DIGYQATNLLINEGHRQIGIAGIDQYPYTGR-KRLA 145 (290)
T ss_dssp C-----CHHHHHCC--CEEEESCC---CC---SCEEECCHH---HHHHHHHHHHHTTTCCSEEEESCCCCTTTHH-HHHH
T ss_pred cCCH-HHHHHHHhCCCCEEEEcCCCC-CC---CCEEEeChH---HHHHHHHHHHHHcCCCEEEEEeCCCCCcchH-HHHH
Confidence 2222 223345568999999875544 21 334455655 77788888888889999999976532 333 4577
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh-cCCCeEEEEEeCHHHHHHHHHHHHHcCCccCC
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK-SLDTKVFVVHMTHALASHLFLNAKKLGMMSKG 264 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~-~~~~~viil~~~~~~~~~il~~a~~~gl~~~~ 264 (860)
.+++.+++.|+++.....+. .+.+..+-...+.++. ..++++|+ +.+...+..+++++++.|+..++
T Consensus 146 gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 146 GYKKALKEANIAINQEWIKP-GDYSYTSGEQAMKAFGKNTDLTGII-AASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp HHHHHHHHTTCCCCGGGEEC-CCSSHHHHHHHHHHHCTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHcCCCCCcceEEc-CCCChhhHHHHHHHHhccCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCC
Confidence 88899999997653211111 1223344444555554 34567765 45677788899999999975444
No 98
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=97.89 E-value=0.00024 Score=72.84 Aligned_cols=205 Identities=9% Similarity=0.026 Sum_probs=125.0
Q ss_pred eEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChh
Q 044527 42 EVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPT 119 (860)
Q Consensus 42 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~ 119 (860)
+-+||++.|... +.-.....+++.+.++- ++++. +.++..++....+....++.+ +|+++|- |.. ..
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~-~~ 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA-------GYQLL--LGYSDYSIEQEEKLLSTFLES-RPAGVVLFGSE-HS 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT-------SCEEC--CEECTTCHHHHHHHHHHHHTS-CCCCEEEESSC-CC
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC-------CCEEE--EEcCCCCHHHHHHHHHHHHhc-CCCEEEEeCCC-CC
Confidence 357999998533 33344555666555542 24443 345556776666666677765 7887654 332 22
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l 197 (860)
.. ....+...++|+|......+ . ..+..+..++. ..+..+++++...|.++++++..... ... ...+.+
T Consensus 72 -~~-~~~~l~~~~iPvV~~~~~~~-~--~~~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf 142 (275)
T 3d8u_A 72 -QR-THQLLEASNTPVLEIAELSS-K--ASYLNIGVDHF---EVGKACTRHLIEQGFKNVGFIGARGNHSTLQ-RQLHGW 142 (275)
T ss_dssp -HH-HHHHHHHHTCCEEEESSSCS-S--SSSEEECBCHH---HHHHHHHHHHHTTTCCCEEEEECSCSSHHHH-HHHHHH
T ss_pred -HH-HHHHHHhCCCCEEEEeeccC-C--CCCCEEEEChH---HHHHHHHHHHHHCCCCeEEEEcCCCCCchHH-HHHHHH
Confidence 22 23334557999998865433 2 12344566666 77788888888889999999987643 233 456788
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
++.+++.|+.+.....+. .+.+..+....+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 143 ~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 213 (275)
T 3d8u_A 143 QSAMIENYLTPDHFLTTH-EAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAI 213 (275)
T ss_dssp HHHHHHTTCCCCCEEECS-SCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHcCCCCCccEEEe-CCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 899999987654322222 123344444555555443 467765 456777888999999999764443333
No 99
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.89 E-value=0.00011 Score=77.73 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=126.2
Q ss_pred CceEEEEEEEec-CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDM-RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~-~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+.+||++.|. +.+.......+++.+.++. ++++.+ .++..++....+....++.+ ++++||.... .
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~--~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~ 126 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY-------KYNIIL--SNSDQNQDKELHLLNNMLGK-QVDGIIFMSG-N 126 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH-------TCEEEE--EECCSHHHHHHHHHHHTSCC-SSCCEEECCS-S
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEEE--EeCCCChHHHHHHHHHHHhC-CCcEEEEecC-C
Confidence 346789999985 3344556667777766652 245443 45555665555555666654 8988875433 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecC-C--CCCcCCHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDN-T--WGNDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~-~--~g~~~~~~ 195 (860)
.... ....+...++|+|......+ . ..+..+..++. .-+..++++|...|.++++++.... . ... ...+
T Consensus 127 ~~~~-~~~~l~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~ 198 (332)
T 2hsg_A 127 VTEE-HVEELKKSPVPVVLAASIES-T--NQIPSVTIDYE---QAAFDAVQSLIDSGHKNIAFVSGTLEEPINHA-KKVK 198 (332)
T ss_dssp CCHH-HHHHHTTSSSCEEEESCCCS-C--TTSCEEEECHH---HHHHHHHHHHHTTTCSCEEEEESCTTSHHHHT-THHH
T ss_pred CCHH-HHHHHHhCCCCEEEEccccC-C--CCCCEEEEChH---HHHHHHHHHHHHCCCCEEEEEeCCcccCccHH-HHHH
Confidence 2222 33345567999998875433 2 12233455555 6677788888888999999998764 2 344 6678
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCC
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKG 264 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~ 264 (860)
.+++.+++.|+++.....+. .+.+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++
T Consensus 199 Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~ 267 (332)
T 2hsg_A 199 GYKRALTESGLPVRDSYIVE-GDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPN 267 (332)
T ss_dssp HHHHHHHTTTCCCCGGGEEE-CCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHcCCCCChheEEe-CCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCC
Confidence 89999999997653211111 122333334445555433 577776 56777888899999999975333
No 100
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.87 E-value=0.00014 Score=77.30 Aligned_cols=209 Identities=12% Similarity=0.037 Sum_probs=132.2
Q ss_pred CceEEEEEEEec---CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDM---RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~---~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
..+-+||++.|. +.+.-.....+++-+.++. + +.+ .+.++..++....+....++.+ ++++||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~----g---~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK----G---RQL--LLADGKHSAEEERQAIQYLLDL-RCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT----T---CEE--EEEECTTSHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC----C---CEE--EEEeCCCChHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 346789999996 3333344555555555542 1 444 4556667777777777777766 8988875433
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTI 194 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~ 194 (860)
......+...+...++|+|......+ .. .+..+..++. .-+..+++.+...|.++++++..... ... ...
T Consensus 129 -~~~~~~~~~~~~~~~iPvV~~~~~~~-~~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~ 200 (338)
T 3dbi_A 129 -FLSVDEIDDIIDAHSQPIMVLNRRLR-KN--SSHSVWCDHK---QTSFNAVAELINAGHQEIAFLTGSMDSPTSI-ERL 200 (338)
T ss_dssp -SSCHHHHHHHHHHCSSCEEEESSCCS-SS--GGGEECBCHH---HHHHHHHHHHHHTTCCSEEEECCCTTCHHHH-HHH
T ss_pred -CCChHHHHHHHHcCCCCEEEEcCCCC-CC--CCCEEEEChH---HHHHHHHHHHHHCCCCEEEEEeCCCCCccHH-HHH
Confidence 22334566677788999998875444 21 1223455655 67777888888889999999976533 233 456
Q ss_pred HHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh--cCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 195 PYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK--SLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~--~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
+.+++.+++.|+++.....+. ...+..+-...+.++. ...+++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 201 ~Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 274 (338)
T 3dbi_A 201 AGYKDALAQHGIALNEKLIAN-GKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSV 274 (338)
T ss_dssp HHHHHHHHHTTCCCCGGGEEC-CCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHHCCCCCCcceEEe-CCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 788999999998754221122 2233344444455543 34567765 567778888999999999865544433
No 101
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.85 E-value=0.00014 Score=76.93 Aligned_cols=209 Identities=13% Similarity=0.078 Sum_probs=126.7
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+.+||++.|... +.......+++.+.++. ++.+.+ .++..++....+....++.+ ++++||.... .
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-------g~~~~~--~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~ 129 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY-------KYNMIL--ANSDNDVEKEEKVLETFLSK-QVDGIVYMGS-S 129 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEEE--EECTTCHHHHHHHHHHHHHT-TCSEEEECSS-C
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-------CCEEEE--EECCCChHHHHHHHHHHHhC-CCCEEEEeCC-C
Confidence 34678999998533 33445556666665542 245543 45666776666666667665 8998875332 1
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 196 (860)
.....+. .+...++|+|......+ . ..+..+.+++. .-+..++++|...|.++++++..+.. ... ...+.
T Consensus 130 ~~~~~~~-~l~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~G 201 (332)
T 2o20_A 130 LDEKIRT-SLKNSRTPVVLVGTIDG-D--KEIPSVNIDYH---LAAYQSTKKLIDSGNKKIAYIMGSLKDVENT-ERMVG 201 (332)
T ss_dssp CCHHHHH-HHHHHCCCEEEESCCCT-T--SCSCEEECCHH---HHHHHHHHHHHHTTCSSEEEECSCTTSHHHH-HHHHH
T ss_pred CCHHHHH-HHHhCCCCEEEEccccC-C--CCCCEEEeChH---HHHHHHHHHHHHCCCCeEEEEeCCcccccHH-HHHHH
Confidence 1222222 33456999998875433 2 12233455555 66677888887789999999986543 233 45678
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+++.+++.|+++.....+. .+.+..+-...+.++.+..+++|+. ++...+..+++++++.|+..++-+.++
T Consensus 202 f~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 202 YQEALLEANIEFDENLVFE-GNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp HHHHHHHTTCCCCGGGEEC-SCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCChhhEEe-CCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEE
Confidence 8899999997654211112 1223333333444443337888765 677788889999999998655444443
No 102
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=0.0002 Score=75.51 Aligned_cols=202 Identities=12% Similarity=0.105 Sum_probs=122.8
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
.++.+||++.|.+.+.......+++.+.++ .+ ++++ .+.++..++....+....++.+ +|++||.......
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~~---g~~l--~i~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~~~ 74 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMF---YN---GVSV--EIRSAGDDNSKQAEDVHYFMDE-GVDLLIISANEAA 74 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTT---SS---SCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHH---cC---CcEE--EEeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCHH
Confidence 346789999987222223344444444332 21 2444 4556667887777777778765 8998886544132
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC--CCcEEEEEEecCC--CCCcCCHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF--KWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~--~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
........+...++|+|......+ .. ..+..+.+++. ..+..+++++... |.++|+++..+.. ... ...+
T Consensus 75 ~~~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~-~R~~ 148 (325)
T 2x7x_A 75 PMTPIVEEAYQKGIPVILVDRKIL-SD-KYTAYIGADNY---EIGRSVGNYIASSLKGKGNIVELTGLSGSTPAM-ERHQ 148 (325)
T ss_dssp HHHHHHHHHHHTTCCEEEESSCCS-SS-CSSEEEEECHH---HHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCeEEEeCCCCC-Cc-ceeEEEecCHH---HHHHHHHHHHHHHcCCCceEEEEECCCCCccHH-HHHH
Confidence 223334445567999999875433 21 12334556665 6777777777663 8899999986533 233 4567
Q ss_pred HHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 196 YLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 196 ~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
.+++.+++. |+++.... . .+....+-...+.++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 149 Gf~~al~~~pg~~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi 212 (325)
T 2x7x_A 149 GFMAAISKFPDIKLIDKA--D-AAWERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR 212 (325)
T ss_dssp HHHHHHHTCTEEEEEEEE--E-CTTSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCEEEeee--c-CCCCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC
Confidence 888999888 88765422 2 12333333444555433 3567765 4566678888999999995
No 103
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.84 E-value=0.00019 Score=75.12 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=70.0
Q ss_pred hhhcCCcEEEecCCcHHHh----hhcCCCCCcCcc-ccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecc-
Q 044527 676 KLASMDNIGSQLGSVVPGA----LSNLNFKDSRLK-KYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAA- 749 (860)
Q Consensus 676 ~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~- 749 (860)
+++++++|++..++..... ++..+.....+. .+.+..+.+.++.+|++|+++.+.+...+...+. .++++..
T Consensus 101 ~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~--~~~~l~~~ 178 (308)
T 2x26_A 101 ADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG--GVRVLKDG 178 (308)
T ss_dssp GGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS--SEEEEEES
T ss_pred HHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCEEEecchhHHHHHhcC--CcEEEecC
Confidence 3448999999877765443 333344333333 3456788999999999999999888777665543 3344432
Q ss_pred -ccccccCceEEEec----cCCc-chHHHHHHHHH----Hhhcc-hHHHHHHHHcC
Q 044527 750 -KYTTSTNGFGFVFQ----KGSP-LVHDISRAIAR----LREEG-TLAKIENVWFN 794 (860)
Q Consensus 750 -~~~~~~~~~~~~~~----k~sp-l~~~in~~i~~----l~e~G-~~~~~~~~~~~ 794 (860)
.+ ......++++ +..| +.+.|++++.+ +.+++ ...++..+|+.
T Consensus 179 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 179 TDL--NQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp TTS--CCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred CCc--CCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 12 2222234443 3455 77788877776 44443 35556667665
No 104
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.83 E-value=0.00014 Score=75.42 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=122.9
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHH---HHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALT---TASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~---~~~~li~~~~v~aviGp~ 115 (860)
..+.+||++.|..+ +.......+++.+.++. ++++. +.++..++....+ ....++.+ +|++||-..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~ 75 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV-------HRHVV--VATGCGESTPREQALEAVRFLIGR-DCDGVVVIS 75 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT-------TCEEE--EECCCSSSCHHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-------CCEEE--EEeCCCchhhhhhHHHHHHHHHhc-CccEEEEec
Confidence 34578999998643 33345556666665542 24554 4455555554444 55566655 898887533
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNT 193 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~ 193 (860)
. ......+ ..+...++|+|......+ .. .+..+..++. ..+..+++++...|.++|+++..... ... ..
T Consensus 76 ~-~~~~~~~-~~l~~~~iPvV~~~~~~~-~~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R 146 (290)
T 2rgy_A 76 H-DLHDEDL-DELHRMHPKMVFLNRAFD-AL--PDASFCPDHR---RGGELAAATLIEHGHRKLAVISGPFTASDNV-ER 146 (290)
T ss_dssp S-SSCHHHH-HHHHHHCSSEEEESSCCT-TS--GGGEECCCHH---HHHHHHHHHHHHTTCCSEEEEESCTTCHHHH-HH
T ss_pred C-CCCHHHH-HHHhhcCCCEEEEccccC-CC--CCCEEEeCcH---HHHHHHHHHHHHCCCceEEEEeCCCCCccHH-HH
Confidence 3 2222222 334457999999875443 21 2233455555 66777888887789999999987643 233 45
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
.+.+++.+++.|+++.....+. .+.+..+-...+.++.+ ..+++|+ +++...+..+++++++.|+..++-+
T Consensus 147 ~~Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di 219 (290)
T 2rgy_A 147 LDGFFDELARHGIARDSVPLIE-SDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDV 219 (290)
T ss_dssp HHHHHHHHHTTTCCGGGSCEEE-CCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHcCCCCCcccEEe-cCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCce
Confidence 6788899999987653211111 11233333344444432 4577776 5677788899999999997644433
No 105
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=97.82 E-value=0.00048 Score=71.46 Aligned_cols=196 Identities=13% Similarity=0.149 Sum_probs=123.4
Q ss_pred eEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHH
Q 044527 42 EVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGA 121 (860)
Q Consensus 42 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~ 121 (860)
..+||++-..+.+.-.+...|++-++ ++.|- .+.++.+.+.|+.+++....+...++.++ +|++||.... . ..
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l---~~~gy-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~~-~-~~ 74 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGL---AEEGY-KDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVGIAT-P-AA 74 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHH---HHTTC-CGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEEESH-H-HH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHH---HHcCC-CCCceEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEECCc-H-HH
Confidence 36899884344443334444554444 33443 44588888899999999888888888765 8999987544 3 22
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccc---------c-ceEeecCCCchhHHHHHHHHHHHhhC--CCcEEEEEEecCCC-
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLT---------S-YSIQIDQDDEASQSQARGISDFISVF--KWKEVILIHEDNTW- 188 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls---------~-~~~r~~p~~~~~~~~~~ai~~~l~~~--~w~~v~ii~~~~~~- 188 (860)
..+... ..++|+|..+..+| ... . .+..+. +. .-+...++++... |.+++++|+.+...
T Consensus 75 ~~~~~~--~~~iPvV~~~~~~~-~~~~~v~~~~~~~~~~~gv~--~~---~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~ 146 (295)
T 3lft_A 75 QGLASA--TKDLPVIMAAITDP-IGANLVKDLKKPGGNVTGVS--DH---NPAQQQVELIKALTPNVKTIGALYSSSEDN 146 (295)
T ss_dssp HHHHHH--CSSSCEEEESCSCT-TTTTSCSCSSCCCSSEEEEE--EC---CCHHHHHHHHHHHCTTCCEEEEEEETTCHH
T ss_pred HHHHHc--CCCCCEEEEeccCh-hhcCccccccCCCCcEEEEE--CC---ccHHHHHHHHHHhCCCCcEEEEEeCCCCcc
Confidence 233222 46999998765444 221 1 233332 12 2244455666555 88999999987542
Q ss_pred CCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 189 GNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 189 g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
+. ...+.+++.+++.|+++...... ...+....++++.. ++++|++..+ ..+...++.+.+.+.
T Consensus 147 ~~-~r~~g~~~al~~~gi~~~~~~~~-----~~~~~~~~~~~l~~-~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 147 SK-TQVEEFKAYAEKAGLTVETFAVP-----STNEIASTVTVMTS-KVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HH-HHHHHHHHHHHHTTCEEEEEEES-----SGGGHHHHHHHHTT-TCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred hH-HHHHHHHHHHHHcCCEEEEEecC-----CHHHHHHHHHHHHh-cCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 34 55788999999999988764332 23456667777763 7888877554 455556677777764
No 106
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.82 E-value=0.00024 Score=73.50 Aligned_cols=207 Identities=11% Similarity=0.069 Sum_probs=127.3
Q ss_pred CceEEEEEEEec-----C-CcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe
Q 044527 40 SDEVHVGIILDM-----R-SWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC 113 (860)
Q Consensus 40 ~~~i~IG~l~~~-----~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG 113 (860)
.++-+||+++|. . .+.-.....+++-+.++. + +++ .+.++..++....+....+..+ ++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~----g---~~~--~~~~~~~~~~~~~~~~~~~~~~-~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE----G---YAL--YMSTGETEEEIFNGVVKMVQGR-QIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT----T---CEE--EECCCCSHHHHHHHHHHHHHTT-CCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc----C---CEE--EEEeCCCCHHHHHHHHHHHHcC-CCCEEEE
Confidence 345789999997 2 233445555666555542 1 444 4455555555444444445544 8998775
Q ss_pred cCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCc
Q 044527 114 IGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGND 191 (860)
Q Consensus 114 p~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~ 191 (860)
... .... .....+...++|+|......+ ... .+..+..++. ..+..+++.+...|.++++++..... ...
T Consensus 76 ~~~-~~~~-~~~~~l~~~~iPvV~~~~~~~-~~~-~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~- 147 (292)
T 3k4h_A 76 LYS-REND-RIIQYLHEQNFPFVLIGKPYD-RKD-EITYVDNDNY---TAAREVAEYLISLGHKQIAFIGGGSDLLVTR- 147 (292)
T ss_dssp SCC-BTTC-HHHHHHHHTTCCEEEESCCSS-CTT-TSCEEECCHH---HHHHHHHHHHHHTTCCCEEEEESCTTBHHHH-
T ss_pred eCC-CCCh-HHHHHHHHCCCCEEEECCCCC-CCC-CCCEEEECcH---HHHHHHHHHHHHCCCceEEEEeCcccchhHH-
Confidence 333 2222 344556667999998875443 221 2334556666 77788888888889999999987644 233
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
...+.+++.+++.|+.+.....+. .+.+.......+.++.+. .+++|+ +++...+..+++.++++|+..++-+
T Consensus 148 ~R~~gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 222 (292)
T 3k4h_A 148 DRLAGMSDALKLADIVLPKEYILH-FDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDV 222 (292)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGEEE-CCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHHHcCCCCChheEEe-cCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeE
Confidence 456788899999998654221111 123444455556555444 566664 5677788899999999997644433
No 107
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.81 E-value=0.00015 Score=74.99 Aligned_cols=203 Identities=8% Similarity=0.065 Sum_probs=123.0
Q ss_pred eEEEEEEEec-----CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 42 EVHVGIILDM-----RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 42 ~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
+-+||++.|. +.+.-.....+++.+.++. ++++. +.++..++....+....++.+ ++++||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-------NYFVL--PFPFSEDRSQIDIYRDLIRSG-NVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-------TCEEE--ECCCCSSTTCCHHHHHHHHTT-CCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc-------CCEEE--EEeCCCchHHHHHHHHHHHcC-CCCEEEEeec
Confidence 4679999986 3344455666666666652 24544 345445554444455566655 8988875333
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTI 194 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~ 194 (860)
..... ....+...++|+|......+ . ..+..+..++. ..+..++++|...|.++|+++..... ... ...
T Consensus 74 -~~~~~-~~~~l~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~ 144 (287)
T 3bbl_A 74 -NYNDP-RVQFLLKQKFPFVAFGRSNP-D--WDFAWVDIDGT---AGTRQAVEYLIGRGHRRIAILAWPEDSRVGN-DRL 144 (287)
T ss_dssp -CTTCH-HHHHHHHTTCCEEEESCCST-T--CCCCEEEECHH---HHHHHHHHHHHHHTCCCEEEEECCTTCHHHH-HHH
T ss_pred -CCCcH-HHHHHHhcCCCEEEECCcCC-C--CCCCEEEeccH---HHHHHHHHHHHHCCCCeEEEEeCCcccccHH-HHH
Confidence 21122 23334557999998875433 2 12233455555 66777888887779999999986543 233 456
Q ss_pred HHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc-C---CCeEEEEEeCHHHHHHHHHHHHHcCCccCCe
Q 044527 195 PYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS-L---DTKVFVVHMTHALASHLFLNAKKLGMMSKGY 265 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~-~---~~~viil~~~~~~~~~il~~a~~~gl~~~~~ 265 (860)
+.+++.+++.|+++.....+. .+.+..+-...++++.+ . .+++|+ +.+...+..+++++++.|+..++-
T Consensus 145 ~Gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~vP~d 217 (287)
T 3bbl_A 145 QGYLEAMQTAQLPIETGYILR-GEGTFEVGRAMTLHLLDLSPERRPTAIM-TLNDTMAIGAMAAARERGLTIGTD 217 (287)
T ss_dssp HHHHHHHHHTTCCCCGGGEEE-CCSSHHHHHHHHHHHHTSCTTTSCSEEE-ESSHHHHHHHHHHHHHTTCCBTTT
T ss_pred HHHHHHHHHcCCCCChhhEEe-CCCCHHHHHHHHHHHHhhCCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCC
Confidence 788899999987653211111 12333444455555544 3 567765 456778888999999999764443
No 108
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=97.81 E-value=0.002 Score=67.16 Aligned_cols=201 Identities=14% Similarity=0.124 Sum_probs=125.7
Q ss_pred EEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~ 121 (860)
-+||++.|... +.......+++.++++. ++ +++.+.++..++....+....++++ ++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~-~~~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA-------PD-VQLLMNDSQNDQSKQNDQIDVLLAK-GVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC-------TT-EEEEEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc-------CC-eEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCCcchh
Confidence 57999998543 22334455555554432 23 2445567777887777777777766 898887643303333
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccc----cceEeecCCCchhHHHHHHHHHHHhh------------CCCcEEEEEEec
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLT----SYSIQIDQDDEASQSQARGISDFISV------------FKWKEVILIHED 185 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls----~~~~r~~p~~~~~~~~~~ai~~~l~~------------~~w~~v~ii~~~ 185 (860)
......+...++|+|......+ ... ..+..+..++. ..++.+++++.. .|-++|+++...
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~-~~~~~~~~~~~~V~~d~~---~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~ 149 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPS-RKALDSYDKAYYVGTDSK---ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 149 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCC-HHHHHTCTTEEEEECCHH---HHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECS
T ss_pred HHHHHHHHHCCCcEEEecCCCC-cccccccCccEEEecCHH---HHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcC
Confidence 3444556678999999875443 211 13455666666 667777777765 677899999865
Q ss_pred CC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC----CCeEEEEEeCHHHHHHHHHHHHHcC
Q 044527 186 NT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL----DTKVFVVHMTHALASHLFLNAKKLG 259 (860)
Q Consensus 186 ~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~----~~~viil~~~~~~~~~il~~a~~~g 259 (860)
.. ... ...+.+++.+++.|+.+.....+. ...+...-...++++.+. .+++|+ +++...+..+++++++.|
T Consensus 150 ~~~~~~~-~R~~gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 150 PGHPDAE-ARTTYVIKELNDKGIKTEQLQLDT-AMWDTAQAKDKMDAWLSGPNANKIEVVI-ANNDAMAMGAVEALKAHN 226 (309)
T ss_dssp TTCHHHH-HHHHHHHHHHHHTTCCEEEEEEEE-CTTCHHHHHHHHHHHHTSTTGGGCCEEE-ESSHHHHHHHHHHHHHTT
T ss_pred CCCccHH-HHHHHHHHHHHhcCCceEEEEEec-CCCCHHHHHHHHHHHHHhCCCCCccEEE-ECCchhHHHHHHHHHHcC
Confidence 33 233 456788899999998765432222 223344444555555443 567765 466777888999999988
No 109
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=97.80 E-value=0.00023 Score=74.17 Aligned_cols=204 Identities=7% Similarity=-0.011 Sum_probs=124.8
Q ss_pred CceEEEEEEEecC--CcchhhHHHHHHHHHHHHHhccCCcccEEEEEEe-cCCCCHHHHHHHHHHhhccCCeEEEEe-cC
Q 044527 40 SDEVHVGIILDMR--SWTGKITNSCISMAIADFYAVNTHCKTRLILHSR-DSQGDPFHALTTASNLMQNVDLQAIIC-IG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~--~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~aviG-p~ 115 (860)
.++.+||+++|.. .+.-.....+++-+.++.+ ++.+.+... ++..++..-.+....++.+ ++++||- |.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS------DFNISANITHYDPYDYNSFVATSQAVIEE-QPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG------GGCEEEEEEEECSSCHHHHHHHHHHHHTT-CCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH------hCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCEEEECCC
Confidence 4568999999985 3334455666666665531 256666554 3456777766767777766 8988764 44
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCC--cEEEEEEecC------C
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKW--KEVILIHEDN------T 187 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w--~~v~ii~~~~------~ 187 (860)
. +.........+...++|+|......+ ... .+..+.+++. ..++.+++++...|. ++|+++.... .
T Consensus 79 ~-~~~~~~~~~~~~~~~iPvV~~~~~~~-~~~-~~~~V~~D~~---~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~ 152 (304)
T 3gbv_A 79 V-PQYTKGFTDALNELGIPYIYIDSQIK-DAP-PLAFFGQNSH---QSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSN 152 (304)
T ss_dssp S-GGGTHHHHHHHHHHTCCEEEESSCCT-TSC-CSEEEECCHH---HHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCH
T ss_pred C-hHHHHHHHHHHHHCCCeEEEEeCCCC-CCC-ceEEEecChH---HHHHHHHHHHHHHhCCCCeEEEEEecccCCccch
Confidence 4 43334445556667999999875444 221 2334456666 777888888877777 9999998431 1
Q ss_pred CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh--cCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 188 WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK--SLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 188 ~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~--~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
... ...+.+++.+++.|..+....... ...+.......+.++. ..++++|+...+. +..+++++++.|+
T Consensus 153 ~~~-~R~~gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~ 223 (304)
T 3gbv_A 153 QQE-SREIGFRQYMQEHHPACNILELNL-HADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK 223 (304)
T ss_dssp HHH-HHHHHHHHHHHHHCTTSEEEEEEE-ESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC
T ss_pred hHH-HHHHHHHHHHHhhCCCcEEEEeee-cCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC
Confidence 223 457788899988876543322111 1111111222333332 2357877665554 7789999999997
No 110
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.80 E-value=9.2e-05 Score=78.37 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=125.2
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+.+||++.|..+ +.......+++.++++ . ++++. +.++..++....+....++.+ +|++|| ... .
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~---~----g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI-~~~-~ 125 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKN---K----GYTLF--LCNTDDDKEKEKTYLEVLQSH-RVAGII-ASR-S 125 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHH---T----TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEE-EET-C
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH---C----CCEEE--EEeCCCChHHHHHHHHHHHhC-CCCEEE-ECC-C
Confidence 34678999998643 3344555666666554 2 24554 445667777666667777765 899888 433 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 196 (860)
... ..+...++|+|......+ . + +..+..++. .-+..++++|...|.++|++|..... .+. ...+.
T Consensus 126 ~~~----~~l~~~~iPvV~~~~~~~-~--~-~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~G 193 (330)
T 3ctp_A 126 QCE----DEYANIDIPVVAFENHIL-D--N-IITISSDNY---NGGRMAFDHLYEKGCRKILHIKGPEVFEATE-LRYKG 193 (330)
T ss_dssp CCS----GGGTTCCSCEEEESSCCC-T--T-SCEEEECHH---HHHHHHHHHHHHTTCCSEEEEECCTTCHHHH-HHHHH
T ss_pred CCH----HHHHhcCCCEEEEeccCC-C--C-CCEEEeCHH---HHHHHHHHHHHHCCCCeEEEEeCCccCccHH-HHHHH
Confidence 211 234567999999875544 3 2 223445555 66677888887789999999987643 233 45678
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc-CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS-LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+++.+++.|+++. ...+. .+....+-...+.++.+ ..+++|+ +++...+..+++++++.|+..++-+.++
T Consensus 194 f~~al~~~g~~~~-~~~~~-~~~~~~~~~~~~~~ll~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~disvv 264 (330)
T 3ctp_A 194 FLDGARAKDLEID-FIEFQ-HDFQVKMLEEDINSMKDIVNYDGIF-VFNDIAAATVMRALKKRGVSIPQEVQII 264 (330)
T ss_dssp HHHHHHHTTCCCE-EEECS-SSCCGGGGGCCCTTGGGGGGSSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCcc-eeEEc-CCCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 8999999998765 32222 11222221222333333 3567765 4566778889999999997654434333
No 111
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.79 E-value=0.00033 Score=71.58 Aligned_cols=201 Identities=10% Similarity=0.017 Sum_probs=128.0
Q ss_pred EEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~ 121 (860)
-+||+++|.... .-.....+++-+.++. ++++. +.++..++....+....++++ ++.+||-... ....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~-~~~~ 71 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR-------GYQLL--IASSDDQPDSERQLQQLFRAR-RCDALFVASC-LPPE 71 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECCC-CCSS
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC-------CCEEE--EEeCCCCHHHHHHHHHHHHHc-CCCEEEEecC-cccc
Confidence 469999986542 2344555666555552 24544 445566777777777777766 8888775333 2112
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHHHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPYLFD 199 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l~~ 199 (860)
......+...++|+|......+ .. .+..+..++. ..++.+++.+...|.++++++..... ... ...+.+++
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~-~~--~~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~gf~~ 144 (272)
T 3o74_A 72 DDSYRELQDKGLPVIAIDRRLD-PA--HFCSVISDDR---DASRQLAASLLSSAPRSIALIGARPELSVSQ-ARAGGFDE 144 (272)
T ss_dssp CCHHHHHHHTTCCEEEESSCCC-TT--TCEEEEECHH---HHHHHHHHHHHTTCCSEEEEEEECTTSHHHH-HHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEccCCC-cc--ccCEEEEchH---HHHHHHHHHHHHCCCcEEEEEecCCCCccHH-HHHHHHHH
Confidence 3333455667999998875443 21 2333555666 77788888888889999999987644 233 45788899
Q ss_pred HHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--C-CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 200 SLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--L-DTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 200 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~-~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
.+++.|+++.....- ..+..+....+.++.+ . .+++|+ +.+...+..+++.++++|+ .++-+
T Consensus 145 ~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-vp~di 209 (272)
T 3o74_A 145 ALQGYTGEVRRYQGE---AFSRECGQRLMQQLIDDLGGLPDALV-TTSYVLLQGVFDTLQARPV-DSRQL 209 (272)
T ss_dssp HTTTCCSEEEEEEES---SSSHHHHHHHHHHHHHHHTSCCSEEE-ESSHHHHHHHHHHHHTSCG-GGCCC
T ss_pred HHHHcCCChheeecC---CCCHHHHHHHHHHHHhcCCCCCcEEE-EeCchHHHHHHHHHHHcCC-Cccce
Confidence 999999876543321 2344444444544432 2 467764 5677788899999999997 44433
No 112
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=97.76 E-value=0.00035 Score=72.81 Aligned_cols=203 Identities=8% Similarity=-0.023 Sum_probs=126.6
Q ss_pred CceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEE-ecCCC
Q 044527 40 SDEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAII-CIGMT 117 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~~ 117 (860)
.++.+||++.|.... .-.....+++-+.++.+ +++.+...+...++....+....++.+ ++++|| .|..
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~- 73 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQG-------VNLRVLEAGGYPNKSRQEQQLALCTQW-GANAIILGTVD- 73 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHT-------CEEEEEECSSTTCHHHHHHHHHHHHHH-TCSEEEECCSS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcC-------CeEEEEcCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-
Confidence 446899999996542 23445556666555532 455544333333888888888888876 788876 4444
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCccc--cc-ceEeecCCCchhHHHHHHHHHHHhhCC-----CcEEEEEEecCC--
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSL--TS-YSIQIDQDDEASQSQARGISDFISVFK-----WKEVILIHEDNT-- 187 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~l--s~-~~~r~~p~~~~~~~~~~ai~~~l~~~~-----w~~v~ii~~~~~-- 187 (860)
+.........+. .++|+|......+... .+ .+..+.+++. ..++.+++++...+ -++|+++.....
T Consensus 74 ~~~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~ 149 (304)
T 3o1i_D 74 PHAYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWY---WMGYEAGKYLAERHPKGSGKTNIALLLGPRTRG 149 (304)
T ss_dssp TTSSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHH---HHHHHHHHHHHTTSBTTTCCEEEEEECCCC---
T ss_pred hhHHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHH---HHHHHHHHHHHHhcccCCCCCEEEEEECCCCcc
Confidence 332222234455 8999999853331000 12 5556666666 77888888888888 889999976543
Q ss_pred CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhh-hcCCCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 188 WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSML-KSLDTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 188 ~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i-~~~~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
... ...+.+++.+++.|+++.... . .+.+.......+.++ +...+++ | +++...+..++++++++|+.
T Consensus 150 ~~~-~R~~gf~~~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 150 GTK-PVTTGFYEAIKNSDIHIVDSF--W-ADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp --C-HHHHHHHHTTTTBTEEEEECC--C-CCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred hHH-HHHHHHHHHHhcCCCEEEEee--c-CCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 233 457889999999898876533 2 223333333344333 3346777 4 56778889999999999964
No 113
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.75 E-value=0.00062 Score=70.60 Aligned_cols=208 Identities=13% Similarity=0.071 Sum_probs=124.0
Q ss_pred CceEEEEEEEecC------CcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe
Q 044527 40 SDEVHVGIILDMR------SWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC 113 (860)
Q Consensus 40 ~~~i~IG~l~~~~------~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG 113 (860)
..+-+||+++|.. .+.-.....+++-+.++ . + +.+ .+.++..++....+....+..+ +|++||-
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~---~-g---~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiI~ 74 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ---H-G---YGT--QTTVSNNMNDLMDEVYKMIKQR-MVDAFIL 74 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT---T-T---CEE--EECCCCSHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH---C-C---CEE--EEEcCCCChHHHHHHHHHHHhC-CcCEEEE
Confidence 4567899999542 22223344444444332 2 2 444 4455555555544544555554 8988775
Q ss_pred cCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCc
Q 044527 114 IGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GND 191 (860)
Q Consensus 114 p~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~ 191 (860)
... .... .....+...++|+|......+ .....+..+..++. .-+..+++.|...|.++++++...... ..
T Consensus 75 ~~~-~~~~-~~~~~l~~~~iPvV~i~~~~~-~~~~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~- 147 (295)
T 3hcw_A 75 LYS-KEND-PIKQMLIDESMPFIVIGKPTS-DIDHQFTHIDNDNI---LASENLTRHVIEQGVDELIFITEKGNFEVSK- 147 (295)
T ss_dssp SCC-CTTC-HHHHHHHHTTCCEEEESCCCS-SGGGGSCEEEECHH---HHHHHHHHHHHHHCCSEEEEEEESSCCHHHH-
T ss_pred cCc-ccCh-HHHHHHHhCCCCEEEECCCCc-cccCCceEEecCcH---HHHHHHHHHHHHcCCccEEEEcCCccchhHH-
Confidence 322 2121 333445667999999875544 32102333455555 667778888877899999999876442 33
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc-----CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS-----LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~-----~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
...+.+++.+++.|+.+.... . ..+..+....++++.+ ..+++|+ +++...|..++++++++|+..++-+
T Consensus 148 ~R~~Gf~~al~~~g~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 222 (295)
T 3hcw_A 148 DRIQGFETVASQFNLDYQIIE-T---SNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDV 222 (295)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-E---CSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTE
T ss_pred HHHHHHHHHHHHcCCCeeEEe-c---cCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 457889999999998875321 1 1333333344444322 2577764 5777788999999999998655544
Q ss_pred EEe
Q 044527 267 WIA 269 (860)
Q Consensus 267 ~i~ 269 (860)
-++
T Consensus 223 ~vi 225 (295)
T 3hcw_A 223 MTA 225 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 114
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.74 E-value=0.00062 Score=70.41 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=127.8
Q ss_pred CceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCC
Q 044527 40 SDEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMT 117 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~ 117 (860)
.++.+||++.|.... .-.....+++-+.++. + +++ .+.++..++....+....++.+ ++++||- |..
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~----g---~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~- 74 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN----K---YEA--LVATSQNSRISEREQILEFVHL-KVDAIFITTLD- 74 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT----T---CEE--EEEECSSCHHHHHHHHHHHHHT-TCSEEEEECSC-
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc----C---CEE--EEECCCCCHHHHHHHHHHHHHc-CCCEEEEecCC-
Confidence 346789999986442 2344555555555543 2 444 4556667888777777788776 7887764 444
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhh-C-CCc-----EEEEEEecCC--C
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISV-F-KWK-----EVILIHEDNT--W 188 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~-~-~w~-----~v~ii~~~~~--~ 188 (860)
..........+...++|+|......+ .. +.+..+.+++. ..+..+++++.. . |-+ +++++..... .
T Consensus 75 ~~~~~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~ 149 (293)
T 3l6u_A 75 DVYIGSAIEEAKKAGIPVFAIDRMIR-SD-AVVSSITSNNQ---MIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYT 149 (293)
T ss_dssp TTTTHHHHHHHHHTTCCEEEESSCCC-CT-TCSEEEEECHH---HHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHH
T ss_pred hHHHHHHHHHHHHcCCCEEEecCCCC-CC-cceeEEecCHH---HHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCch
Confidence 33333444556667999999875544 21 13444566666 777777777766 4 666 9999986543 2
Q ss_pred CCcCCHHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 189 GNDNTIPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 189 g~~~~~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
.. ...+.+++.+++. |+++..... ...+..+....+.++.+. ++++| ++++...+..+++.++++|+.
T Consensus 150 ~~-~R~~gf~~~l~~~~g~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 220 (293)
T 3l6u_A 150 TN-ERHRGFLKGIENEPTLSIVDSVS---GNYDPVTSERVMRQVIDSGIPFDAV-YCHNDDIAMGVLEALKKAKIS 220 (293)
T ss_dssp HH-HHHHHHHHHHTTCTTEEEEEEEE---CTTCHHHHHHHHHHHHHTTCCCSEE-EESSHHHHHHHHHHHHHTTCC
T ss_pred HH-HHHHHHHHHHHhCCCcEEeeecc---CCCCHHHHHHHHHHHHHhCCCCCEE-EECCchHHHHHHHHHHhCCCC
Confidence 23 4568889999998 988765432 223444545555555433 45665 456777788899999999963
No 115
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=97.74 E-value=0.0013 Score=68.57 Aligned_cols=203 Identities=10% Similarity=-0.059 Sum_probs=129.6
Q ss_pred eEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChh
Q 044527 42 EVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPT 119 (860)
Q Consensus 42 ~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~ 119 (860)
.-+||++.+..+. .-.....+++-+.++.+ +++.+. .++..++....+....++.+ ++.+||- |.. +.
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~-~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~-~~ 73 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALN-------VTVEYR-GAAQYDIQEQITVLEQAIAK-NPAGIAISAID-PV 73 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHT-------CEEEEE-ECSSSCHHHHHHHHHHHHHH-CCSEEEECCSS-TT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcC-------CEEEEe-CCCcCCHHHHHHHHHHHHHh-CCCEEEEcCCC-HH
Confidence 3579988886543 34456667777776643 455442 46677888878888888876 8888764 434 33
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC--CCcEEEEEEecCCCCCcCCHHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF--KWKEVILIHEDNTWGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~--~w~~v~ii~~~~~~g~~~~~~~l 197 (860)
........+...++|+|......+ ... .+..+.+++. ..+..+++.+... |-++++++............+.+
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-~~~-~~~~V~~d~~---~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf 148 (305)
T 3g1w_A 74 ELTDTINKAVDAGIPIVLFDSGAP-DSH-AHSFLGTNNY---NAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGF 148 (305)
T ss_dssp TTHHHHHHHHHTTCCEEEESSCCT-TSC-CSCEEECCHH---HHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCC-CCc-eeEEECcCHH---HHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHH
Confidence 333444556667999999875544 221 2344556666 7788888888776 88999999865432111356778
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
++.+++.|..+....... ...+.......+.++.+. ++++| ++.+...+..++++++++|+.
T Consensus 149 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~a~g~~~al~~~g~~ 212 (305)
T 3g1w_A 149 KETLEAEFPAIEVIAVED-GRGDSLHSRRVAHQLLEDYPNLAGI-FATEANGGVGVGDAVRLESRA 212 (305)
T ss_dssp HHHHHHHCTTEEEEEEEE-CTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHhhCCCCEEEEEec-CCCCHHHHHHHHHHHHHhCCCceEE-EECCCcchhhHHHHHHhcCCC
Confidence 888888776554433322 223444444555554433 45554 456677888999999999975
No 116
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=97.74 E-value=0.0016 Score=67.03 Aligned_cols=196 Identities=11% Similarity=0.099 Sum_probs=120.2
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 44 HVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 44 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
+||++.|..+ +.......+++.+.++.+ +++ .+.++..++....+....++.+ +|++||- |.. +...
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g-------~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~-~~~~ 71 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKELG-------YKI--IVEDSQNDSSKELSNVEDLIQQ-KVDVLLINPVD-SDAV 71 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCSS-TTTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhcC-------cEE--EEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCCc-hhhh
Confidence 6899988543 334456666666666532 444 4456667777777777777765 8988764 443 3322
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC-C-CcEEEEEEecCCC--CCcCCHHHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF-K-WKEVILIHEDNTW--GNDNTIPYL 197 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~-~-w~~v~ii~~~~~~--g~~~~~~~l 197 (860)
......+...++|+|......+ .. ..+..+..++. ..++.++++|... | -++++++...... .. ...+.+
T Consensus 72 ~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~-~R~~Gf 145 (283)
T 2ioy_A 72 VTAIKEANSKNIPVITIDRSAN-GG-DVVCHIASDNV---KGGEMAAEFIAKALKGKGNVVELEGIPGASAAR-DRGKGF 145 (283)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS-SS-CCSEEEEECHH---HHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHH-HHHHHH
T ss_pred HHHHHHHHHCCCeEEEecCCCC-Cc-ceeEEEecChH---HHHHHHHHHHHHHcCCCceEEEEECCCCCccHH-HHHHHH
Confidence 2233445667999998864333 21 12233445555 6677777777554 5 8999999865432 23 446778
Q ss_pred HHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 198 FDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 198 ~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
++.+++. |+++..... ......+-...++++.+ ..+++| ++++...|..+++++++.|+
T Consensus 146 ~~al~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~ 207 (283)
T 2ioy_A 146 DEAIAKYPDIKIVAKQA---ADFDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR 207 (283)
T ss_dssp HHHHTTCTTEEEEEEEE---CTTCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCCCEEEeecc---CCCCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC
Confidence 8999888 887654322 12333444444555433 245555 55677788899999999996
No 117
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.71 E-value=0.00027 Score=73.20 Aligned_cols=208 Identities=9% Similarity=0.022 Sum_probs=127.3
Q ss_pred CceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.++-+||+++|.... .-.....+++-+.++. ++++ .+.++..++....+....++.+ ++++||-... .
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~-~ 74 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK-------GYSV--LLANTAEDIVREREAVGQFFER-RVDGLILAPS-E 74 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEECCC-S
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCCHHHHHHHHHHHHHC-CCCEEEEeCC-C
Confidence 345789999986442 2344555666555552 2444 4456666777766666777666 8988875433 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 196 (860)
. .......+...++|+|......+ . ..+..+..++. ..+..+++.+...|.++++++..... ... ...+.
T Consensus 75 ~-~~~~~~~~~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~g 146 (291)
T 3egc_A 75 G-EHDYLRTELPKTFPIVAVNRELR-I--PGCGAVLSENV---RGARTAVEYLIARGHTRIGAIVGSAGLMTSR-ERLKG 146 (291)
T ss_dssp S-CCHHHHHSSCTTSCEEEESSCCC-C--TTCEEEEECHH---HHHHHHHHHHHHTTCCSEEEECSCTTSHHHH-HHHHH
T ss_pred C-ChHHHHHhhccCCCEEEEecccC-C--CCCCEEEECcH---HHHHHHHHHHHHcCCCEEEEEeCCCCCcCHH-HHHHH
Confidence 2 33445567778999998875443 2 12344556666 77888888888889999999986643 233 45778
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh--cCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK--SLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~--~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
+++.+++.|+.+....... ...+.......+.++. ...+++|+ +.+...+..+++.+++.|+..++-+-+
T Consensus 147 f~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 218 (291)
T 3egc_A 147 FRAAMSAAGLPVRQEWIAA-GGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEI 218 (291)
T ss_dssp HHHHHHHTTCCCCGGGEEC-------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEE
T ss_pred HHHHHHHcCCCCCHHHeEe-CCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 8899999887643211111 0011111122233332 34567765 577788889999999999865443333
No 118
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.70 E-value=0.00076 Score=69.67 Aligned_cols=205 Identities=11% Similarity=0.098 Sum_probs=123.9
Q ss_pred ceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 41 DEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
++-+||++++.+.+.-.....+++-+.++. ++++.+...+.. +. -.+....++.+ +|++||-... ...
T Consensus 11 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~--~~-~~~~~~~l~~~-~vdgiIi~~~-~~~ 78 (289)
T 3k9c_A 11 SSRLLGVVFELQQPFHGDLVEQIYAAATRR-------GYDVMLSAVAPS--RA-EKVAVQALMRE-RCEAAILLGT-RFD 78 (289)
T ss_dssp --CEEEEEEETTCHHHHHHHHHHHHHHHHT-------TCEEEEEEEBTT--BC-HHHHHHHHTTT-TEEEEEEETC-CCC
T ss_pred CCCEEEEEEecCCchHHHHHHHHHHHHHHC-------CCEEEEEeCCCC--HH-HHHHHHHHHhC-CCCEEEEECC-CCC
Confidence 457899999544444445556666555543 256655544433 22 33445556555 8998874332 222
Q ss_pred HHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHH
Q 044527 121 AQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDS 200 (860)
Q Consensus 121 ~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~ 200 (860)
...+. .+.. ++|+|......+ . ..+..+..++. .-++.++++|...|-++|+++............+.+++.
T Consensus 79 ~~~~~-~~~~-~iPvV~i~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDELG-ALAD-RVPALVVARASG-L--PGVGAVRGDDV---AGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHHHH-HHHT-TSCEEEESSCCS-S--TTSEEEEECHH---HHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHHHH-HHHc-CCCEEEEcCCCC-C--CCCCEEEeChH---HHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 23333 3445 999998875433 1 12334555666 777888888888899999999876543221457888999
Q ss_pred HhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 201 LHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 201 ~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
+++.|+.+... .+. ...+..+-...+.++.+ ..+++| ++++...+..+++++++.|+..++-+-+
T Consensus 151 l~~~g~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~v 217 (289)
T 3k9c_A 151 MDRHGLSASAT-VVT-GGTTETEGAEGMHTLLEMPTPPTAV-VAFNDRCATGVLDLLVRSGRDVPADISV 217 (289)
T ss_dssp HHHTTCGGGEE-EEC-CCSSHHHHHHHHHHHHTSSSCCSEE-EESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHCCCCCCcc-EEE-CCCCHHHHHHHHHHHHcCCCCCCEE-EECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999874332 222 22344444455555544 356666 4567778889999999999865543333
No 119
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.68 E-value=0.00048 Score=71.13 Aligned_cols=205 Identities=9% Similarity=0.049 Sum_probs=122.3
Q ss_pred CceEEEEEEEecCC---cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cC
Q 044527 40 SDEVHVGIILDMRS---WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~~~---~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~ 115 (860)
.++-+||+++|... +.-.....+++-+.++ . ++++.+. +...++... ....+++...++++||- |.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~----~---g~~~~~~--~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST----T---QYHLVVT--PHIHAKDSM-VPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT----S---SCEEEEC--CBSSGGGTT-HHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH----c---CCEEEEe--cCCcchhHH-HHHHHHHHcCCccEEEEecC
Confidence 34578999999654 2233334444433332 2 2555544 333333322 23334443347877663 32
Q ss_pred CChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCcCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GNDNT 193 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~~~ 193 (860)
. .. . .....+...++|+|......+ .. .+..+..++. ..+..+++.+...|-++++++...... .. ..
T Consensus 76 ~-~~-~-~~~~~l~~~~iPvV~i~~~~~-~~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R 145 (288)
T 3gv0_A 76 E-PN-D-PRVRFMTERNMPFVTHGRSDM-GI--EHAFHDFDNE---AYAYEAVERLAQCGRKRIAVIVPPSRFSFHD-HA 145 (288)
T ss_dssp C-TT-C-HHHHHHHHTTCCEEEESCCCS-SC--CCEEEEECHH---HHHHHHHHHHHHTTCCEEEEECCCTTSHHHH-HH
T ss_pred C-CC-c-HHHHHHhhCCCCEEEECCcCC-CC--CCcEEEeCcH---HHHHHHHHHHHHCCCCeEEEEcCCcccchHH-HH
Confidence 2 22 1 233445667999998875443 21 2233455666 778888888888899999999766432 33 45
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
.+.+++.+++.|+.+.....+. ...+..+....+.++.+. .+++|+ +++...+..+++.+++.|+..++-+
T Consensus 146 ~~gf~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 218 (288)
T 3gv0_A 146 RKGFNRGIRDFGLTEFPIDAVT-IETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDV 218 (288)
T ss_dssp HHHHHHHHHHTTCEECCCCSCC-TTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSC
T ss_pred HHHHHHHHHHcCCCcchhheec-cccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCce
Confidence 7888999999998765432222 223445555666666544 466664 5677788889999999997644433
No 120
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.66 E-value=0.00051 Score=71.57 Aligned_cols=202 Identities=12% Similarity=0.096 Sum_probs=123.9
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+-+||++.|... +.-.....+++-+.++. ++.+. +.++..++....+....++.+ +|++||-... .
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~ 81 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH-------STDVL--LGQIDAPPRGTQQLSRLVSEG-RVDGVLLQRR-E 81 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT-------TCCEE--EEECCSTTHHHHHHHHHHHSC-SSSEEEECCC-T
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC-------CCEEE--EEeCCCChHHHHHHHHHHHhC-CCcEEEEecC-C
Confidence 34577999998644 33455666666665553 24444 445556666666666666665 8988775333 2
Q ss_pred hHHH-HHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHH
Q 044527 119 TGAQ-ILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 119 ~~~~-~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
.... .+..+. . ++|+|......+ . . +..+..++. .-+..+++.|...|-++++++..... ... ...+
T Consensus 82 ~~~~~~~~~l~-~-~iPvV~i~~~~~-~--~-~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~ 151 (303)
T 3kke_A 82 DFDDDMLAAVL-E-GVPAVTINSRVP-G--R-VGSVILDDQ---KGGGIATEHLITLGHSRIAFISGTAIHDTAQ-RRKE 151 (303)
T ss_dssp TCCHHHHHHHH-T-TSCEEEESCCCT-T--C-CCEEEECHH---HHHHHHHHHHHHTTCCSEEEEESCSSCHHHH-HHHH
T ss_pred CCcHHHHHHHh-C-CCCEEEECCcCC-C--C-CCEEEECcH---HHHHHHHHHHHHCCCCeEEEEeCCCcCccHH-HHHH
Confidence 2222 344444 4 999999876655 4 2 223455555 67778888888889999999986543 223 4578
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhh-----hc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCC
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSML-----KS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKG 264 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i-----~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~ 264 (860)
.+++.+++.|+.+....... ...+...-...+.++ .+ ..+++| ++++...+..+++++++.|+..++
T Consensus 152 Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai-~~~nd~~A~g~~~al~~~G~~vP~ 225 (303)
T 3kke_A 152 GYLETLASAGLRSEAAWVVD-AGWEADAGSAALNTLYRGANLGKPDGPTAV-VVASVNAAVGALSTALRLGLRVPE 225 (303)
T ss_dssp HHHHHHHHTTCCCCGGGEEE-CCSSHHHHHHHHHHHHHHHCTTSTTSCSEE-EESSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHcCCCCCcceEEe-cCCChHHHHHHHHHhcchhhhcCCCCCcEE-EECCHHHHHHHHHHHHHcCCCCCC
Confidence 88899999998754211111 123334444455555 43 346666 456677888899999999976444
No 121
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.60 E-value=0.0012 Score=70.07 Aligned_cols=209 Identities=10% Similarity=0.057 Sum_probs=125.1
Q ss_pred ceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 41 DEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 41 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
.+.+||++.|... +.......+++.+.++. ++++.+ .++..++....+....++.+ ++++||-... ..
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~--~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~~ 125 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-------GYTLIL--GNAWNNLEKQRAYLSMMAQK-RVDGLLVMCS-EY 125 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT-------TCEEEE--EECTTCHHHHHHHHHHHHHT-TCSEEEECCS-CC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEEEE--EeCCCCHHHHHHHHHHHHcC-CCCEEEEeCC-CC
Confidence 3568999998643 33444556666655542 245544 56667777666666677765 8988875322 11
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l 197 (860)
.......+....++|+|......+ .. +....+..++. .-+..++++|...|.++++++..... ... ...+.+
T Consensus 126 ~~~~~~~l~~~~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~-~R~~Gf 199 (340)
T 1qpz_A 126 PEPLLAMLEEYRHIPMVVMDWGEA-KA-DFTDAVIDNAF---EGGYMAGRYLIERGHREIGVIPGPLERNTGA-GRLAGF 199 (340)
T ss_dssp CHHHHHHHHTTTTSCEEEEEESSC-CC-SSSEEEECCHH---HHHHHHHHHHHHHTCCCEEEECCCTTSHHHH-HHHHHH
T ss_pred ChHHHHHHHhhCCCCEEEEecccC-CC-CCCCEEEECHH---HHHHHHHHHHHHCCCCEEEEEeCCCccccHH-HHHHHH
Confidence 111122222336999998875433 21 12234555555 66677788877779999999976533 233 456788
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
++.+++.|+.+.....+. .+.+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 200 ~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disv 270 (340)
T 1qpz_A 200 MKAMEEAMIKVPESWIVQ-GDFEPESGYRAMQQILSQPHRPTAVF-CGGDIMAMGALCAADEMGLRVPQDVSL 270 (340)
T ss_dssp HHHHHHTTCCCCGGGBCC-CCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCChhheEe-CCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 899999997653221122 12233333445555544 3567765 456778888999999999865443333
No 122
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.59 E-value=0.00066 Score=70.08 Aligned_cols=206 Identities=12% Similarity=0.060 Sum_probs=123.6
Q ss_pred CceEEEEEEEec--CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 40 SDEVHVGIILDM--RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 40 ~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
.++.+||+++|. +.+.-.....+++-+.++.+ +.+.+...+...+.. .+. .+.+...++++||-...
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~~~~~~~~~~--~~~-~~~l~~~~vdgiIi~~~- 77 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQN-------YNYNVVICPYKTDCL--HLE-KGISKENSFDAAIIANI- 77 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTT-------TCSEEEEEEECTTCG--GGC-GGGSTTTCCSEEEESSC-
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcC-------CeEEEEecCCCchhH--HHH-HHHHhccCCCEEEEecC-
Confidence 345789999993 33334456666666665532 344443332221111 122 23333448988875444
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCcCCHH
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GNDNTIP 195 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~~~~~ 195 (860)
......... ....++|+|......+ . +..+..++. .-++.+++.+...|.++++++..+... .. ...+
T Consensus 78 ~~~~~~~~~-~~~~~iPvV~~~~~~~-~----~~~V~~D~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~ 147 (289)
T 3g85_A 78 SNYDLEYLN-KASLTLPIILFNRLSN-K----YSSVNVDNY---KMGEKASLLFAKKRYKSAAAILTESLNDAMD-NRNK 147 (289)
T ss_dssp CHHHHHHHH-HCCCSSCEEEESCCCS-S----SEEEEECHH---HHHHHHHHHHHHTTCCBCEEEECCCSSHHHH-HHHH
T ss_pred CcccHHHHH-hccCCCCEEEECCCCC-C----CCEEEeCHH---HHHHHHHHHHHHcCCCEEEEEeCCcccccHH-HHHH
Confidence 333333333 3467999999876544 2 234555666 777888888888899999999876432 23 4578
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC--CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL--DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
.+++.+++.|+.+.....+. ......+....+.++.+. .+++|+ +++...+..+++++++.|+..++-+-+
T Consensus 148 gf~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 148 GFIETCHKNGIKISENHIIA-AENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHHHHTTCBCCGGGEEE-CCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcCCCCChhheec-cCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 88999999998654211112 223444445555555443 466664 567778888999999999865544433
No 123
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.56 E-value=0.0016 Score=68.02 Aligned_cols=200 Identities=9% Similarity=0.066 Sum_probs=127.7
Q ss_pred eEEEEEEEecC-CcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChh
Q 044527 42 EVHVGIILDMR-SWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPT 119 (860)
Q Consensus 42 ~i~IG~l~~~~-~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~ 119 (860)
..+||+++|.. .+.-.....+++-+.++. ++++ .+.++..++....+....++.+ ++.+||- |.. ..
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~-~~ 70 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL-------GAKV--FVQSANGNEETQMSQIENMINR-GVDVLVIIPYN-GQ 70 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT-------SCEE--EEEECTTCHHHHHHHHHHHHHT-TCSEEEEECSS-TT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc-------CCEE--EEECCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-hh
Confidence 35799999953 444556777777776663 2444 4456677887777777778776 8888764 444 33
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHh-hCCCcEEEEEEecCCC--CCcCCHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFIS-VFKWKEVILIHEDNTW--GNDNTIPY 196 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~-~~~w~~v~ii~~~~~~--g~~~~~~~ 196 (860)
........+...++|+|......+ .. +....+..++. ..++.+++.|. ..|-++++++...... .. ...+.
T Consensus 71 ~~~~~~~~~~~~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~-~R~~G 144 (313)
T 3m9w_A 71 VLSNVVKEAKQEGIKVLAYDRMIN-DA-DIDFYISFDNE---KVGELQAKALVDIVPQGNYFLMGGSPVDNNAK-LFRAG 144 (313)
T ss_dssp SCHHHHHHHHTTTCEEEEESSCCT-TS-CCSEEEEECHH---HHHHHHHHHHHHHCSSEEEEEEESCTTCHHHH-HHHHH
T ss_pred hhHHHHHHHHHCCCeEEEECCcCC-CC-CceEEEecCHH---HHHHHHHHHHHHhCCCCcEEEEECCCCCccHH-HHHHH
Confidence 334455566778999999875544 21 12134555666 77888888887 8899999999765432 22 34677
Q ss_pred HHHHHhhC----CceEeEEEeccCCCCChHHHHHHHHhhhc---CCCeEEEEEeCHHHHHHHHHHHHHcCCc
Q 044527 197 LFDSLHDN----DIDIARRTSISLASSTHDQIIEKLSMLKS---LDTKVFVVHMTHALASHLFLNAKKLGMM 261 (860)
Q Consensus 197 l~~~~~~~----g~~i~~~~~~~~~~~~~~~~~~~l~~i~~---~~~~viil~~~~~~~~~il~~a~~~gl~ 261 (860)
+++.+++. ++++....... ..+.......+.++.+ ..+++| ++.+...+..+++++++.|+.
T Consensus 145 f~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~ai-~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 145 QMKVLKPYVDSGKIKVVGDQWVD--GWLPENALKIMENALTANNNKIDAV-VASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHHHTTSEEEEEEEECG--GGCHHHHHHHHHHHHHHTTTCCCEE-EESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHhhccCCCEEEEeeccCC--CcCHHHHHHHHHHHHHhCCCCeeEE-EECCCchHHHHHHHHHHcCCC
Confidence 88888776 56665443211 1233343444444432 356665 455677888899999999974
No 124
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.55 E-value=0.0021 Score=65.75 Aligned_cols=205 Identities=11% Similarity=0.066 Sum_probs=124.6
Q ss_pred CceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.++-+||+++|.... .-.....+++-+.++. + +++. +.++..++....+....++++ ++++||-... .
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~----g---~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~-~ 73 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR----G---YIGV--LFDANADIEREKTLLRAIGSR-GFDGLILQSF-S 73 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT----T---CEEE--EEECTTCHHHHHHHHHHHHTT-TCSEEEEESS-C
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC----C---CEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEecC-C
Confidence 456789999986432 2334444444444332 2 4444 455666776666666666665 8988765444 3
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC-CC--CcCCHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT-WG--NDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~-~g--~~~~~~ 195 (860)
. ......+...++|+|......+ .. .+..+..++. .-++.+++.+...|-++++++..... .. . ...+
T Consensus 74 ~--~~~~~~l~~~~iPvV~i~~~~~-~~--~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~ 144 (276)
T 3jy6_A 74 N--PQTVQEILHQQMPVVSVDREMD-AC--PWPQVVTDNF---EAAKAATTAFRQQGYQHVVVLTSELELSRTRQ-ERYR 144 (276)
T ss_dssp C--HHHHHHHHTTSSCEEEESCCCT-TC--SSCEEECCHH---HHHHHHHHHHHTTTCCEEEEEEECSTTCHHHH-HHHH
T ss_pred c--HHHHHHHHHCCCCEEEEecccC-CC--CCCEEEEChH---HHHHHHHHHHHHcCCCeEEEEecCCCCCchHH-HHHH
Confidence 3 4445566778999999875433 21 1233455555 77888889998889999999987654 21 2 3456
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCCh-HHHHHHHHhhhc-CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTH-DQIIEKLSMLKS-LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~-~~~~~~l~~i~~-~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
.+++.+++.+. +.... ..... .......+.+.. ..+++|+ +++...+..+++.+++.|+..++-+-+++
T Consensus 145 gf~~~l~~~~~-~~~~~----~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 215 (276)
T 3jy6_A 145 GILAAAQDVDV-LEVSE----SSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTATG 215 (276)
T ss_dssp HHHTTCSEEEE-EEECS----SSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEEE
T ss_pred HHHHHHHhCCc-EEEec----cccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 67777766643 22111 11122 233444444433 4566664 56788888999999999986555554443
No 125
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.55 E-value=0.00063 Score=70.55 Aligned_cols=208 Identities=9% Similarity=0.100 Sum_probs=127.0
Q ss_pred EEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh--
Q 044527 43 VHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT-- 119 (860)
Q Consensus 43 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~-- 119 (860)
-+||++.|... +.-.....+++-+.++. ++++. +.++..++....+....++++ ++.+||-....+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ-------GYSML--LTSTNNNPDNERRGLENLLSQ-HIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-CCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC-------CCEEE--EEeCCCChHHHHHHHHHHHHC-CCCEEEEeccccccc
Confidence 68999999654 33445566666665552 24444 456667777777777777766 8988764332021
Q ss_pred -HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC-CCCcCCHHHH
Q 044527 120 -GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT-WGNDNTIPYL 197 (860)
Q Consensus 120 -~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~l 197 (860)
........+...++|+|......+ .. .+..+..++. .-++.+++++...|.++++++..... ... ...+.+
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~-~~--~~~~V~~d~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~-~R~~gf 158 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYA-EL--AAPSFTLDDV---KGGMMAAEHLLSLGHTHMMGIFKADDTQGV-KRMNGF 158 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCT-TC--SSCEEEECHH---HHHHHHHHHHHHTTCCSEEEEEESSSHHHH-HHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcC-CC--CCCEEEeCcH---HHHHHHHHHHHHCCCCcEEEEcCCCCccHH-HHHHHH
Confidence 233444556677999999875444 22 1223455555 77788888888889999999986554 223 456788
Q ss_pred HHHHhhCCceEeEEEeccCCCCCh--HHHHHHHHhhhc--CC--CeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 198 FDSLHDNDIDIARRTSISLASSTH--DQIIEKLSMLKS--LD--TKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~--~~~~~~l~~i~~--~~--~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
.+.+++.|+++....... ..... ......+.++.+ .. +++|+ +.+...+..+++++++.|+..++-+.++
T Consensus 159 ~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 159 IQAHRERELFPSPDMIVT-FTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHHTTCCCCGGGEEE-ECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCCcceEEE-ecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 899999987653211111 00100 111223333322 22 66764 5577788889999999998655444443
No 126
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.53 E-value=0.00021 Score=73.49 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=120.6
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.++-+||+++|... +.-.....+++-+.++. ++.+.+. +.. ++....+....++++ ++++|| ... .
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~--~~~-~~~~~~~~~~~l~~~-~vdgiI-~~~-~ 69 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK-------GYRLSVI--DSL-TSQAGTDPITSALSM-RPDGII-IAQ-D 69 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG-------TCEEEEE--CSS-SSCSSSCHHHHHHTT-CCSEEE-EES-C
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHC-------CCEEEEE--eCC-CchHHHHHHHHHHhC-CCCEEE-ecC-C
Confidence 34578999998644 33445555555554442 2455544 333 444333444455555 888888 322 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLF 198 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~ 198 (860)
.....+.. .++|+|......+ .- ..+..+..++. ..++.+++++...|.++++++........ ...+.++
T Consensus 70 ~~~~~~~~----~~iPvV~~~~~~~-~~-~~~~~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~-~R~~gf~ 139 (280)
T 3gyb_A 70 IPDFTVPD----SLPPFVIAGTRIT-QA-STHDSVANDDF---RGAEIATKHLIDLGHTHIAHLRVGSGAGL-RRFESFE 139 (280)
T ss_dssp C------------CCCEEEESCCCS-SS-CSTTEEEECHH---HHHHHHHHHHHHTTCCSEEEECCSSHHHH-HHHHHHH
T ss_pred CChhhHhh----cCCCEEEECCCCC-CC-CCCCEEEechH---HHHHHHHHHHHHCCCCeEEEEeCCCchHH-HHHHHHH
Confidence 22222222 8999999875551 11 12223455555 77888888888889999999987655444 6778899
Q ss_pred HHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 199 DSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 199 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
+.+++.|+.+.... .. ...+..+....+.++.+ ..+++|+ +++...+..++++++++|+..++-+
T Consensus 140 ~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 206 (280)
T 3gyb_A 140 ATMRAHGLEPLSND-YL-GPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDL 206 (280)
T ss_dssp HHHHHTTCCCEECC-CC-SCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHcCcCCCccc-cc-CCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCee
Confidence 99999998766432 22 22344444445555433 3466664 5677788899999999997644433
No 127
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.49 E-value=0.0016 Score=68.51 Aligned_cols=89 Identities=17% Similarity=0.101 Sum_probs=53.6
Q ss_pred HhhhcCCcEEEecCCcHHHh----hhcCCCCCcCccccC-CHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecc
Q 044527 675 IKLASMDNIGSQLGSVVPGA----LSNLNFKDSRLKKYN-SAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAA 749 (860)
Q Consensus 675 ~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~ 749 (860)
+++++|++|++..++..... ++..++....+..+. +..+.+.+|.+|++|+++...+.......+...+......
T Consensus 126 ~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~ 205 (324)
T 3ksx_A 126 VADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGE 205 (324)
T ss_dssp GGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEETTHHHHHHHTTSEEEEEEST
T ss_pred HHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCCCCEEEEccHHHHHHHhcCCcEEEeccc
Confidence 34459999999877765433 334444433333332 6788999999999999998887776655543212222222
Q ss_pred ccccccCceEEEeccC
Q 044527 750 KYTTSTNGFGFVFQKG 765 (860)
Q Consensus 750 ~~~~~~~~~~~~~~k~ 765 (860)
.+ ......+++++.
T Consensus 206 ~~--~~~~~~~~~~~~ 219 (324)
T 3ksx_A 206 GL--GLTGGFFLSSRR 219 (324)
T ss_dssp TS--CCCCEEEEEEHH
T ss_pred cc--CCCccEEEECHH
Confidence 33 333445666654
No 128
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.48 E-value=0.001 Score=70.73 Aligned_cols=178 Identities=14% Similarity=0.033 Sum_probs=106.8
Q ss_pred HHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeec----ccccceeeccccccccceEEEE
Q 044527 492 VFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT----ANRSVYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 492 l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t----~~r~~~~~fs~p~~~~~~~~lv 567 (860)
+.+.+++. |. ++++.+.. -.|++..++.+|.+|++|+++.+.... .++.....++.++...+..+++
T Consensus 35 l~~~~~~~-G~--~v~~~~~~------~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv 105 (348)
T 3uif_A 35 FPEELRKQ-GI--KVEWVPAA------MASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVV 105 (348)
T ss_dssp HHHHHHHT-TE--EEEEEEEC------TTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEE
T ss_pred HHHHHHhc-CC--eEEEEecc------cCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEE
Confidence 55566666 74 66664331 113567799999999999998554433 3455566666677777788888
Q ss_pred ecCCCCCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccccccccccchhhh
Q 044527 568 PIDQNNNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFV 647 (860)
Q Consensus 568 ~~~~~~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l 647 (860)
++...
T Consensus 106 ~~~s~--------------------------------------------------------------------------- 110 (348)
T 3uif_A 106 PKNST--------------------------------------------------------------------------- 110 (348)
T ss_dssp ETTCC---------------------------------------------------------------------------
T ss_pred ECCCC---------------------------------------------------------------------------
Confidence 87652
Q ss_pred HHHHHHHHHHHHHHhhhccccccchhhHhhhcCCcEEEecCCcHHHh----hhcCCCCCcCccccC-CHHHHHHHHhcCC
Q 044527 648 VIVWVFVVLILSSSYTATLASMLTIQQIKLASMDNIGSQLGSVVPGA----LSNLNFKDSRLKKYN-SAEEYANALSMGS 722 (860)
Q Consensus 648 ~~~w~~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~l~~g~ 722 (860)
+..+++++|++|++..++..... ++..++....+..+. +..+...+|.+|+
T Consensus 111 ------------------------i~s~~DLkGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~ 166 (348)
T 3uif_A 111 ------------------------AKSIKDLKGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT 166 (348)
T ss_dssp ------------------------CCSGGGGTTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS
T ss_pred ------------------------CCCHHHcCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC
Confidence 22334459999999877776433 344454433344333 5678899999999
Q ss_pred cEEEEcchHHHHHHHhccC-ccceeeccccccccCceEEEeccC----Cc-chHHHHHHHHH
Q 044527 723 ISAIVDEIPYVRAFLSKYS-AHYTTAAAKYTTSTNGFGFVFQKG----SP-LVHDISRAIAR 778 (860)
Q Consensus 723 ~~~~i~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~k~----sp-l~~~in~~i~~ 778 (860)
+|+++...+.... .+... ..+....+..........+++++. .| ....|.+++.+
T Consensus 167 vDa~~~~~~~~~~-~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 167 VDGFFSLFDSYIL-EDRGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp SSEEEESTTHHHH-HHTTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred CCEEEechHHHHH-HhcCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 9999988776543 22221 112111111100123456777776 45 55555555444
No 129
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.47 E-value=0.0018 Score=67.32 Aligned_cols=201 Identities=10% Similarity=0.057 Sum_probs=123.7
Q ss_pred eEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEE-ecCCChh
Q 044527 42 EVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAII-CIGMTPT 119 (860)
Q Consensus 42 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~avi-Gp~~~s~ 119 (860)
+++||++.|... +.-.....+++-+.++.+ +++ .+.++ .++....+....++.+ ++++|| .|.. +.
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~~--~~~~~-~~~~~~~~~i~~l~~~-~vdgiii~~~~-~~ 69 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-------FEV--IKIAV-PDGEKTLNAIDSLAAS-GAKGFVICTPD-PK 69 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHT-------EEE--EEEEC-CSHHHHHHHHHHHHHT-TCCEEEEECSC-GG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcC-------CEE--EEeCC-CCHHHHHHHHHHHHHc-CCCEEEEeCCC-ch
Confidence 589999998654 334556667777766652 444 45565 5787778888888877 788875 4555 54
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCccccc----ceEeecCCCchhHHHHHHHHHHHh-hCCC-----cEEEEEE-ecCC-
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTS----YSIQIDQDDEASQSQARGISDFIS-VFKW-----KEVILIH-EDNT- 187 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~----~~~r~~p~~~~~~~~~~ai~~~l~-~~~w-----~~v~ii~-~~~~- 187 (860)
........+...++|+|......+ .... .+..+.+++. ..++..++++. +.+- .+++++. ....
T Consensus 70 ~~~~~~~~~~~~~iPvV~~~~~~~-~~~~~~~~~~~~V~~D~~---~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~ 145 (306)
T 8abp_A 70 LGSAIVAKARGYDMKVIAVDDQFV-NAKGKPMDTVPLVMLAAT---KIGERQGQELYKEMQKRGWDVKESAVMAITANEL 145 (306)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCB-CTTSCBCTTSCEEEECHH---HHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTS
T ss_pred hhHHHHHHHHHCCCcEEEeCCCCC-CccccccccccEEecChh---HHHHHHHHHHHHHHHhcCCCccceEEEEecCCCC
Confidence 555555566778999999874433 2211 2333444555 55565555553 3232 3899986 3332
Q ss_pred -CCCcCCHHHHHHHHhhCCc---eEeEEEeccCCCCChHHHHHHHHhhhcC--CCeE-EEEEeCHHHHHHHHHHHHHcCC
Q 044527 188 -WGNDNTIPYLFDSLHDNDI---DIARRTSISLASSTHDQIIEKLSMLKSL--DTKV-FVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 188 -~g~~~~~~~l~~~~~~~g~---~i~~~~~~~~~~~~~~~~~~~l~~i~~~--~~~v-iil~~~~~~~~~il~~a~~~gl 260 (860)
... ...+.+++.+++.|. +++.... ...+...-...+.++.+. +++. +|++++...+..++++++++|+
T Consensus 146 ~~~~-~R~~Gf~~~l~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~ 221 (306)
T 8abp_A 146 DTAR-RRTTGSMDALKAAGFPEKQIYQVPT---KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 221 (306)
T ss_dssp HHHH-HHHHHHHHHHHHHTCCGGGEEEEEC---SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred hHHH-HHHHHHHHHHHhcCCCCcEEEeecc---CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCC
Confidence 222 456788888888764 3433222 123444555555555544 4455 4566678888899999999997
Q ss_pred cc
Q 044527 261 MS 262 (860)
Q Consensus 261 ~~ 262 (860)
..
T Consensus 222 ~v 223 (306)
T 8abp_A 222 KA 223 (306)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 130
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=0.0021 Score=68.41 Aligned_cols=205 Identities=11% Similarity=0.069 Sum_probs=120.3
Q ss_pred ceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 41 DEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 41 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
.+-+||++.|... +.......+++.+.++ . ++++.+ .++..++....+....++.+ ++++||-... ..
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~----g~~~~~--~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~-~~ 133 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASK---A----GLATII--TNSNEDATTMSGSLEFLTSH-GVDGIICVPN-EE 133 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHH---T----TCCEEE--EECTTCHHHHHHHHHHHHHT-TCSCEEECCC-GG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHH---c----CCEEEE--EeCCCCHHHHHHHHHHHHhC-CCCEEEEeCC-CC
Confidence 4578999998543 3334455566555544 2 245443 45556666666666666665 8888775444 33
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPYL 197 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l 197 (860)
... ....+...++|+|......+ . ...+..+..++. .-+..++++|...|.++|++|..... ... ...+.+
T Consensus 134 ~~~-~~~~l~~~~iPvV~i~~~~~-~-~~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~Gf 206 (348)
T 3bil_A 134 CAN-QLEDLQKQGMPVVLVDRELP-G-DSTIPTATSNPQ---PGIAAAVELLAHNNALPIGYLSGPMDTSTGR-ERLEDF 206 (348)
T ss_dssp GHH-HHHHHHHC-CCEEEESSCCS-C-C-CCCEEEEECH---HHHHHHHHHHHHTTCCSEEEECCCTTSHHHH-HHHHHH
T ss_pred ChH-HHHHHHhCCCCEEEEcccCC-C-CCCCCEEEeChH---HHHHHHHHHHHHCCCCeEEEEeCCCCCccHH-HHHHHH
Confidence 322 33344557999998875443 2 012223445555 66777888887789999999976533 223 456788
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCC-CeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLD-TKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
++.+++.|++.... +. .+.+..+-...+.++.+.. + .|++++...+..+++++++.|+..++-+-+
T Consensus 207 ~~al~~~g~~~~~v--~~-~~~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disv 273 (348)
T 3bil_A 207 KAACANSKIGEQLV--FL-GGYEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSV 273 (348)
T ss_dssp HHHHHHTTCCCCEE--EC-CCSSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHHcCcCccEE--Ec-CCCCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 89999998733221 11 1223333344445544333 5 445667788899999999999765443333
No 131
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.45 E-value=0.0012 Score=68.42 Aligned_cols=207 Identities=11% Similarity=0.072 Sum_probs=121.4
Q ss_pred CceEEEEEEEec-----CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEec
Q 044527 40 SDEVHVGIILDM-----RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICI 114 (860)
Q Consensus 40 ~~~i~IG~l~~~-----~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp 114 (860)
.++-+||+++|. +.+.-.....+++-+.++- ++.+.+...++ .+. . ....+++...+|++||-.
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~-~~~--~-~~~~~~l~~~~vdGiIi~ 72 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-------GLDLLLIPDEP-GEK--Y-QSLIHLVETRRVDALIVA 72 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-------TCEEEEEEECT-TCC--C-HHHHHHHHHTCCSEEEEC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHC-------CCEEEEEeCCC-hhh--H-HHHHHHHHcCCCCEEEEe
Confidence 345789999983 2333344555555554442 25666655543 111 1 223334333478887643
Q ss_pred CCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCcC
Q 044527 115 GMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GNDN 192 (860)
Q Consensus 115 ~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~~ 192 (860)
.. .... .....+...++|+|......+ . ..+..+..++. .-+..+++.|...|-++++++...... .. .
T Consensus 73 ~~-~~~~-~~~~~l~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~ 143 (294)
T 3qk7_A 73 HT-QPED-FRLQYLQKQNFPFLALGRSHL-P--KPYAWFDFDNH---AGASLAVKRLLELGHQRIAFVSTDARISYVD-Q 143 (294)
T ss_dssp SC-CSSC-HHHHHHHHTTCCEEEESCCCC-S--SCCEEEEECHH---HHHHHHHHHHHHTTCCCEEEEEESSCCHHHH-H
T ss_pred CC-CCCh-HHHHHHHhCCCCEEEECCCCC-C--CCCCEEEcChH---HHHHHHHHHHHHCCCceEEEEeCCcccchHH-H
Confidence 22 1111 334456667999998875432 1 12334556666 777888888888899999999876532 22 4
Q ss_pred CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 193 TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
..+.+++.+++.|+.+....... ...+...-...+.++.+ ..+++|+ +++...|..+++++++.|+..++-+-+
T Consensus 144 R~~Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~v 219 (294)
T 3qk7_A 144 RLQGYVQTMSEAGLMPLAGYLQK-ADPTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISL 219 (294)
T ss_dssp HHHHHHHHHHTTTCCCCTTCEEE-ECSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEE
T ss_pred HHHHHHHHHHHCCCCCChhHeec-CCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 57888899999987643211111 11333344444544443 3567664 567788889999999999865544333
No 132
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.44 E-value=0.0021 Score=68.08 Aligned_cols=203 Identities=8% Similarity=0.013 Sum_probs=123.0
Q ss_pred CceEEEEEEEec--CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC--CCHHHHHHHHHHhhccCCeEEEEecC
Q 044527 40 SDEVHVGIILDM--RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ--GDPFHALTTASNLMQNVDLQAIICIG 115 (860)
Q Consensus 40 ~~~i~IG~l~~~--~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~--~~~~~a~~~~~~li~~~~v~aviGp~ 115 (860)
..+.+||++.|. +.+.-.....+++-+.++. ++++.+...++. .++....+....++.+ ++++||-+.
T Consensus 41 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~ 112 (342)
T 1jx6_A 41 QRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL-------NINYQLNQVFTRPNADIKQQSLSLMEALKS-KSDYLIFTL 112 (342)
T ss_dssp SSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT-------TCCEEEEEEECCTTCCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred CCceEEEEEecCCcccHHHHHHHHHHHHHHHHc-------CCeEEEEecCCCCccCHHHHHHHHHHHHhc-CCCEEEEeC
Confidence 567899999985 4443344555665555442 256666655554 6777666777777776 899887755
Q ss_pred CChhHHHHHHHhhcCCCCcEEec-ccCCCccc---cc-ceEeecCCCchhHHHHHHHHHHHhh-CC-CcEEEEEEecCCC
Q 044527 116 MTPTGAQILADLGSRAKIPIISL-FTTLPNSL---TS-YSIQIDQDDEASQSQARGISDFISV-FK-WKEVILIHEDNTW 188 (860)
Q Consensus 116 ~~s~~~~~~~~~~~~~~ip~Is~-~a~~~~~l---s~-~~~r~~p~~~~~~~~~~ai~~~l~~-~~-w~~v~ii~~~~~~ 188 (860)
. ..........+...++|.|.. ....| .. .. .+..+.+++. ..+..+++++.. .| .++|+++......
T Consensus 113 ~-~~~~~~~~~~~~~~~ip~V~~~~~~~~-~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~ 187 (342)
T 1jx6_A 113 D-TTRHRKFVEHVLDSTNTKLILQNITTP-VREWDKHQPFLYVGFDHA---EGSRELATEFGKFFPKHTYYSVLYFSEGY 187 (342)
T ss_dssp S-SSTTHHHHHHHHHHCSCEEEEETCCSC-BGGGTTSCCSEEEECCHH---HHHHHHHHHHHHHSCTTCEEEEECCSTTH
T ss_pred C-hHhHHHHHHHHHHcCCCEEEEecCCCc-ccccccCCCceEEecCcH---HHHHHHHHHHHHHcCCCceEEEEEcCCcc
Confidence 4 332222233345568998877 33222 11 11 3344556665 667778888766 46 9999999765432
Q ss_pred -CCcCCHHHHHHHHhhCCc-eEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 189 -GNDNTIPYLFDSLHDNDI-DIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 189 -g~~~~~~~l~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
.. ...+.+++.+++.|. +.... +. ...+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+
T Consensus 188 ~~~-~R~~Gf~~~l~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 188 ISD-VRGDTFIHQVNRDNNFELQSA--YY-TKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHH-HHHHHHHHHHHHHHCCEEEEE--EC-CCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred hhh-HHHHHHHHHHHhCCCcEEEEE--ec-CCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 23 456778888888776 33222 22 12333333344444433 3467665 5667778889999999996
No 133
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.40 E-value=0.0011 Score=70.28 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=126.9
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+-+||++.|... +.-.....+++-+.++ .++++ .+.++..++..-.+....++.+ ++++||-... .
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~-------~g~~~--~~~~~~~~~~~~~~~i~~l~~~-~vdGiIi~~~-~ 134 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED-------TELQP--VVGVTDYLPEKEEKVLYEMLSW-RPSGVIIAGL-E 134 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS-------SSSEE--EEEECTTCHHHHHHHHHHHHTT-CCSEEEEECS-C
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH-------CCCEE--EEEeCCCCHHHHHHHHHHHHhC-CCCEEEEECC-C
Confidence 34678999998643 3333444444443332 22555 4456666777766667777765 7887664222 1
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecC--C-CCCcCCHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDN--T-WGNDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~--~-~g~~~~~~ 195 (860)
... .....+...++|+|......+ ......+..++. .-+..+++.|...|.++++++.... . ... ...+
T Consensus 135 ~~~-~~~~~l~~~~iPvV~i~~~~~---~~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~ 206 (344)
T 3kjx_A 135 HSE-AARAMLDAAGIPVVEIMDSDG---KPVDAMVGISHR---RAGREMAQAILKAGYRRIGFMGTKMPLDYRAR-KRFE 206 (344)
T ss_dssp CCH-HHHHHHHHCSSCEEEEEECSS---CCSSEEEEECHH---HHHHHHHHHHHHHTCCSCCEEESSTTTCHHHH-HHHH
T ss_pred CCH-HHHHHHHhCCCCEEEEeCCCC---CCCCCEEEECcH---HHHHHHHHHHHHCCCCeEEEEecCcccCccHH-HHHH
Confidence 121 334456677999998842221 112234455655 6677788888777999999998764 2 233 4567
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh--cCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK--SLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~--~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
.+++.+++.|+.+.....+. ...+...-...+.++. ...+++|+ +++...+..+++.+++.|+..++-+-++
T Consensus 207 Gf~~al~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 207 GFTEVLGKNGVEIEDREFYS-GGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHHTTCCCSCEEECS-SCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHcCCCCChheEEe-CCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 88999999998765433332 2233333334444433 23577765 6677888899999999998655544444
No 134
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.33 E-value=0.0048 Score=63.03 Aligned_cols=200 Identities=12% Similarity=0.004 Sum_probs=117.3
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.++.+||++.|... +.-.....+++-+.++ . ++.+.+.. +..++.... ++ ++++||-... .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~----g~~~~~~~--~~~~~~~~~----~~----~vdgiI~~~~-~ 67 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLAL---F----DYEMIVCS--GKKSHLFIP----EK----MVDGAIILDW-T 67 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHT---T----TCEEEEEE--STTTTTCCC----TT----TCSEEEEECT-T
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHH---C----CCeEEEEe--CCCCHHHHh----hc----cccEEEEecC-C
Confidence 34578999998643 3334455555555443 2 25555433 323322111 11 5776654222 1
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~ 196 (860)
.....+. .+...++|+|......+ .. .+..+..++. ..+..+++.+...|.++++++..+.. ... ...+.
T Consensus 68 ~~~~~~~-~l~~~~iPvV~~~~~~~-~~--~~~~V~~D~~---~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~g 139 (277)
T 3cs3_A 68 FPTKEIE-KFAERGHSIVVLDRTTE-HR--NIRQVLLDNR---GGATQAIEQFVNVGSKKVLLLSGPEKGYDSQ-ERLAV 139 (277)
T ss_dssp SCHHHHH-HHHHTTCEEEESSSCCC-ST--TEEEEEECHH---HHHHHHHHHHHHTTCSCEEEEECCTTSHHHH-HHHHH
T ss_pred CCHHHHH-HHHhcCCCEEEEecCCC-CC--CCCEEEeCcH---HHHHHHHHHHHHcCCceEEEEeCCccCccHH-HHHHH
Confidence 1222333 34457999999875433 21 3444556665 66777888887789999999987643 223 45678
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC---CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL---DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~---~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
+++.+++.|+++. . +. ...+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+++
T Consensus 140 f~~~l~~~g~~~~-~--~~-~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg 211 (277)
T 3cs3_A 140 STRELTRFGIPYE-I--IQ-GDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRIIG 211 (277)
T ss_dssp HHHHHHHTTCCEE-E--EE-CCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEEC
T ss_pred HHHHHHHcCCCee-E--Ee-CCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 8899999998765 2 12 123344444556665544 566664 56777788899999999976555444443
No 135
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.33 E-value=0.0054 Score=61.74 Aligned_cols=190 Identities=12% Similarity=0.066 Sum_probs=117.5
Q ss_pred EEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~ 121 (860)
-+||++.|... +.-.....+++-+.++-+ +++. +.++..++..-.+....+..+ +++++|-.......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g-------~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~~~- 71 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQG-------YDPI--MMESQFSPQLVAEHLGVLKRR-NIDGVVLFGFTGIT- 71 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHHTT-TCCEEEEECCTTCC-
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcC-------CEEE--EEeCCCcHHHHHHHHHHHHhc-CCCEEEEecCcccc-
Confidence 36999998543 223445556665555432 4444 345556666655555666655 78887643220211
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEec--C-CCCCcCCHHHHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHED--N-TWGNDNTIPYLF 198 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~--~-~~g~~~~~~~l~ 198 (860)
. ......++|+|......+ .+..+..++. .-+..+++.+...|.++|+++... + .... ...+.++
T Consensus 72 ~---~~l~~~~~pvV~~~~~~~-----~~~~V~~d~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~-~R~~gf~ 139 (255)
T 1byk_A 72 E---EMLAHWQSSLVLLARDAK-----GFASVCYDDE---GAIKILMQRLYDQGHRNISYLGVPHSDVTTGK-RRHEAYL 139 (255)
T ss_dssp T---TTSGGGSSSEEEESSCCS-----SCEEEEECHH---HHHHHHHHHHHHTTCCCEEEECCCTTSTTTTH-HHHHHHH
T ss_pred H---HHHHhcCCCEEEEccccC-----CCCEEEEccH---HHHHHHHHHHHHcCCCeEEEEecCCCCcccHH-HHHHHHH
Confidence 1 234456899998864332 2234455555 667778888877899999999864 2 2233 4567888
Q ss_pred HHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 199 DSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 199 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
+.+++.|+++.. +. .+....+-...+.++.+.++++|+ +++...+..+++++++.|+
T Consensus 140 ~al~~~g~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~~~g~ 196 (255)
T 1byk_A 140 AFCKAHKLHPVA---AL-PGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQEQRI 196 (255)
T ss_dssp HHHHHTTCCCEE---EC-CCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCcce---ee-cCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHHHcCC
Confidence 999999976532 12 223344444555555555677764 5677788899999999996
No 136
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.33 E-value=0.0061 Score=64.89 Aligned_cols=209 Identities=11% Similarity=0.142 Sum_probs=124.6
Q ss_pred ceEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 41 DEVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 41 ~~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
.+-+||++.|.... .-.....+++-+.++ . ++.+. +.++..++....+....++.+ +++++|-... ..
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~----g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdGiI~~~~-~~ 137 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQ---G----GLQLL--LGYTAYSPEREEQLVETMLRR-RPEAMVLSYD-GH 137 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHH---T----TCEEE--EEECTTCHHHHHHHHHHHHHT-CCSEEEEECS-CC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHH---C----CCEEE--EEeCCCChHHHHHHHHHHHhC-CCCEEEEeCC-CC
Confidence 45679999986432 223344455544444 2 24554 445666777666666667665 7887764222 11
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC---CCcCCHHH
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW---GNDNTIPY 196 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~---g~~~~~~~ 196 (860)
.. .....+...++|+|......+ . .....+..++. .-+..+++.|...|.++++++...... .. ...+.
T Consensus 138 ~~-~~~~~l~~~~iPvV~i~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~-~R~~G 209 (355)
T 3e3m_A 138 TE-QTIRLLQRASIPIVEIWEKPA-H--PIGHTVGFSNE---RAAYDMTNALLARGFRKIVFLGEKDDDWTRGA-ARRAG 209 (355)
T ss_dssp CH-HHHHHHHHCCSCEEEESSCCS-S--CSSEEEECCHH---HHHHHHHHHHHHTTCCSEEEEEESSCTTSHHH-HHHHH
T ss_pred CH-HHHHHHHhCCCCEEEECCccC-C--CCCCEEEeChH---HHHHHHHHHHHHCCCCeEEEEccCcccChhHH-HHHHH
Confidence 22 334456677999998752222 1 12234555555 667778888888899999999876432 23 45788
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+++.+++.|+.+.....+........+-...+.++.+ ..+++|+ +++...+..+++.+++.|+..++-+-++
T Consensus 210 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 210 FKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp HHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred HHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999999998754211111012233333344444432 3567764 5677888899999999998655444443
No 137
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.23 E-value=0.0036 Score=65.05 Aligned_cols=201 Identities=11% Similarity=0.068 Sum_probs=120.8
Q ss_pred CceEEEEEEEec------CCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe
Q 044527 40 SDEVHVGIILDM------RSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC 113 (860)
Q Consensus 40 ~~~i~IG~l~~~------~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG 113 (860)
..+-+||++.|. +.+.-.....+++-+.++.+ +++. +.++..++....+....+..+ ++.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRG-------YSTR--MTVSENSGDLYHEVKTMIQSK-SVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHT-------CEEE--ECCCSSHHHHHHHHHHHHHTT-CCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCC-------CEEE--EEeCCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 345789999997 22223445556665555532 4443 455555555544545555554 8988764
Q ss_pred cCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCc
Q 044527 114 IGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GND 191 (860)
Q Consensus 114 p~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~ 191 (860)
... .... .....+...++|+|......+ . ..+..+..++. .-+..+++.|...|-++++++...... ..
T Consensus 90 ~~~-~~~~-~~~~~l~~~~iPvV~i~~~~~-~--~~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~- 160 (305)
T 3huu_A 90 LYS-LKDD-PIEHLLNEFKVPYLIVGKSLN-Y--ENIIHIDNDNI---DAAYQLTQYLYHLGHRHILFLQESGHYAVTE- 160 (305)
T ss_dssp SSC-BTTC-HHHHHHHHTTCCEEEESCCCS-S--TTCCEEECCHH---HHHHHHHHHHHHTTCCSEEEEEESSCBHHHH-
T ss_pred eCC-cCCc-HHHHHHHHcCCCEEEECCCCc-c--cCCcEEEeCHH---HHHHHHHHHHHHCCCCeEEEEcCCcccchhH-
Confidence 322 2122 334455667999998864322 1 12334555665 777888888888899999999876542 23
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhh-h--cCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCe
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSML-K--SLDTKVFVVHMTHALASHLFLNAKKLGMMSKGY 265 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i-~--~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~ 265 (860)
...+.+++.+++.|+.+.. .+. .+.+.-...+.++ . ...+++|+ +++...+..+++.+++.|+..++-
T Consensus 161 ~R~~Gf~~~l~~~g~~~~~--~~~---~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~d 231 (305)
T 3huu_A 161 DRSVGFKQYCDDVKISNDC--VVI---KSMNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPED 231 (305)
T ss_dssp HHHHHHHHHHHHTTCCCCE--EEE---CSHHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHHHHHHcCCCccc--EEe---cCcHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcc
Confidence 4578889999999987654 122 1222133344444 3 33567664 567788889999999999865443
No 138
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.20 E-value=0.0049 Score=64.83 Aligned_cols=205 Identities=11% Similarity=-0.011 Sum_probs=125.9
Q ss_pred eEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChh
Q 044527 42 EVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPT 119 (860)
Q Consensus 42 ~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~ 119 (860)
..+||++.|... +.-.....+++-+.++. ++++ .+.++..++..-.+....++.+ ++.+||- |.. +.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~i~~~~~~-~vdgiIi~~~~-~~ 71 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA-------GYKT--DLQYADDDIPNQLSQIENMVTK-GVKVLVIASID-GT 71 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHHH-TCSEEEECCSS-GG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc-------CCEE--EEeeCCCCHHHHHHHHHHHHHc-CCCEEEEEcCC-ch
Confidence 468999999654 33444566666666552 2444 4455778888888888888887 7888764 444 44
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhh-------CCCcEEEEEEecCCC--CC
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISV-------FKWKEVILIHEDNTW--GN 190 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~-------~~w~~v~ii~~~~~~--g~ 190 (860)
........+...++|+|......+ ...+....+..++. ..++.+++++.. .|.++++++...... ..
T Consensus 72 ~~~~~~~~~~~~giPvV~~~~~~~-~~~~~~~~V~~D~~---~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~ 147 (330)
T 3uug_A 72 TLSDVLKQAGEQGIKVIAYDRLIR-NSGDVSYYATFDNF---QVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAF 147 (330)
T ss_dssp GGHHHHHHHHHTTCEEEEESSCCC-SCTTCCEEEEECHH---HHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHH
T ss_pred hHHHHHHHHHHCCCCEEEECCCCC-CCCceeEEEEeCHH---HHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHH
Confidence 444555567778999999876554 32222233455555 667777777766 688899999754432 22
Q ss_pred cCCHHHHHHHHhhC---C-ceEeEEEe-----ccCCCCChHHHHHHHHhhhc-----CCCeEEEEEeCHHHHHHHHHHHH
Q 044527 191 DNTIPYLFDSLHDN---D-IDIARRTS-----ISLASSTHDQIIEKLSMLKS-----LDTKVFVVHMTHALASHLFLNAK 256 (860)
Q Consensus 191 ~~~~~~l~~~~~~~---g-~~i~~~~~-----~~~~~~~~~~~~~~l~~i~~-----~~~~viil~~~~~~~~~il~~a~ 256 (860)
...+.+++.+++. | +++..... .. .......-...+.++.+ ..+++| ++.+...+..++++++
T Consensus 148 -~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ai-~~~nd~~A~g~~~al~ 224 (330)
T 3uug_A 148 -FFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGT-LRWDPATAQARMDNLLSAYYTDAKVDAV-LSPYDGLSIGIISSLK 224 (330)
T ss_dssp -HHHHHHHHHHHHHHHHTSEECTTCCCSHHHHBC-GGGCHHHHHHHHHHHHHHHCSSSCCCEE-ECSSHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhccccCceEEeecccccccccC-CCCCHHHHHHHHHHHHHhcCCCCCeEEE-EECCCchHHHHHHHHH
Confidence 3457777888775 3 55432110 00 01122223333333332 566765 4567778889999999
Q ss_pred HcCCccCC
Q 044527 257 KLGMMSKG 264 (860)
Q Consensus 257 ~~gl~~~~ 264 (860)
++|+..+.
T Consensus 225 ~~g~~vP~ 232 (330)
T 3uug_A 225 GVGYGTKD 232 (330)
T ss_dssp HTTCSSSS
T ss_pred HcCCCCCC
Confidence 99976543
No 139
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.20 E-value=0.0049 Score=65.15 Aligned_cols=207 Identities=11% Similarity=0.030 Sum_probs=125.9
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCC
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMT 117 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~ 117 (860)
..+-+||++.|... +.-.....+++-+.++. ++.+ .+.++..++..-.+....++.+ +|++||- |..
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-------g~~~--~~~~~~~~~~~~~~~~~~l~~~-~vdGiIi~~~~- 128 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA-------GYQM--LIGNSHYDAGQELQLLRAYLQH-RPDGVLITGLS- 128 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT-------TCEE--EEEECTTCHHHHHHHHHHHHTT-CCSEEEEECSC-
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC-------CCEE--EEEeCCCChHHHHHHHHHHHcC-CCCEEEEeCCC-
Confidence 34568999998644 33445666666666552 2444 4556667777776767777766 8887753 322
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC-CCCcCCHHH
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT-WGNDNTIPY 196 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~-~g~~~~~~~ 196 (860)
... .....+...++|+|......+ . ... .+..++. .-+..+++.|...|.++++++..... ... ...+.
T Consensus 129 ~~~--~~~~~l~~~~iPvV~~~~~~~-~--~~~-~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~-~R~~G 198 (339)
T 3h5o_A 129 HAE--PFERILSQHALPVVYMMDLAD-D--GRC-CVGFSQE---DAGAAITRHLLSRGKRRIGFLGAQLDERVM-KRLDG 198 (339)
T ss_dssp CCT--THHHHHHHTTCCEEEEESCCS-S--SCC-EEECCHH---HHHHHHHHHHHHTTCCSEEEEEESCCHHHH-HHHHH
T ss_pred CCH--HHHHHHhcCCCCEEEEeecCC-C--CCe-EEEECHH---HHHHHHHHHHHHCCCCeEEEEeCCCCccHH-HHHHH
Confidence 211 333455667999998853322 1 122 4555665 67777888888889999999987643 223 45677
Q ss_pred HHHHHhhCCceEe-EEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 197 LFDSLHDNDIDIA-RRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 197 l~~~~~~~g~~i~-~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+++.+++.|++.. ...... .......-...+.++.+ ..+++|+ +++...+..+++++++.|+..++-+-++
T Consensus 199 f~~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 199 YRAALDAADCRDAGLEWLDP-QPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHHHHTTCCCGGGEEEEC-SCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCCCCCCChheEec-CCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 8899999887211 111111 12333333444444432 3567765 5677888899999999998655544443
No 140
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.19 E-value=0.003 Score=64.60 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=116.0
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.++-+||+++|... +.-.....+++-+.++. + +++. +.++..++....+....++.+ ++++||-... +
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~----g---~~~~--~~~~~~~~~~~~~~~~~l~~~-~~dgiIi~~~-~ 74 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH----G---YQVL--IGNSDNDIKKAQGYLATFVSH-NCTGMISTAF-N 74 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT----T---CCEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEECGG-G
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC----C---CEEE--EEeCCCCHHHHHHHHHHHHhC-CCCEEEEecC-C
Confidence 34577999998643 22344555555555442 2 4444 456666777666666667666 8888775333 3
Q ss_pred hHHHHHHH-hhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHH
Q 044527 119 TGAQILAD-LGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~-~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
.. . .. .+...++|+|......+ .. . .+..++. ..++.+++.+...|.++++++..... ... ...+
T Consensus 75 ~~--~-~~~~l~~~~iPvV~~~~~~~-~~--~--~V~~D~~---~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~ 142 (277)
T 3e61_A 75 EN--I-IENTLTDHHIPFVFIDRINN-EH--N--GISTNHF---KGGQLQAEVVRKGKGKNVLIVHENLLIDAFH-QRVQ 142 (277)
T ss_dssp HH--H-HHHHHHHC-CCEEEGGGCC--------------HH---HHHHHHHHHHHHTTCCSEEEEESCTTSHHHH-HHHH
T ss_pred hH--H-HHHHHHcCCCCEEEEeccCC-CC--C--eEEechH---HHHHHHHHHHHHCCCCeEEEEeCCCCCccHH-HHHH
Confidence 22 2 33 45567999999976544 22 2 4455555 77788888888889999999986543 223 4567
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEec
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIAT 270 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~~ 270 (860)
.+++.+++.|+++.. .... .......+.. +. +...+++|+ +.+...+..++++++++|+..++-+-+++
T Consensus 143 gf~~~l~~~~~~~~~-~~~~-~~~~~~~~~~-l~--~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig 211 (277)
T 3e61_A 143 GIKYILDQQRIDYKM-LEAT-LLDNDKKFID-LI--KELSIDSII-CSNDLLAINVLGIVQRYHFKVPAEIQIIG 211 (277)
T ss_dssp HHHHHHHC---CEEE-EEGG-GGGSHHHHHH-HH--HHHTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHHcCCCccc-eecC-CCCHHHHHHH-hh--cCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 888999999987764 2211 1111222222 22 134567664 55777888899999999986555444443
No 141
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.12 E-value=0.021 Score=58.61 Aligned_cols=196 Identities=12% Similarity=0.027 Sum_probs=115.9
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEec--CCCCHHHHHHHHHHhhccCCeEEEEe-cCCChh
Q 044527 44 HVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRD--SQGDPFHALTTASNLMQNVDLQAIIC-IGMTPT 119 (860)
Q Consensus 44 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D--~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~ 119 (860)
+||++.|... +.-.....+++.+.++.+ +.+. +.+ +..++..-.+....++.+ +|+++|- |.. ..
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~~-~~ 71 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLG-------VSVD--IFASPSEGDFQSQLQLFEDLSNK-NYKGIAFAPLS-SV 71 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CCEE--EEECSSTTCHHHHHHHHHHHHTS-SEEEEEECCSS-SS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcC-------CEEE--EeCCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-hH
Confidence 6899987533 223344555555555432 4444 344 556776666666667765 8998764 433 22
Q ss_pred H-HHHHHHhhcCCCCcEEecccCCCcccc----c-ce-EeecCCCchhHHHHHHHHHHHhhC-C--CcEEEEEEecCCC-
Q 044527 120 G-AQILADLGSRAKIPIISLFTTLPNSLT----S-YS-IQIDQDDEASQSQARGISDFISVF-K--WKEVILIHEDNTW- 188 (860)
Q Consensus 120 ~-~~~~~~~~~~~~ip~Is~~a~~~~~ls----~-~~-~r~~p~~~~~~~~~~ai~~~l~~~-~--w~~v~ii~~~~~~- 188 (860)
. ...+ ..+...++|+|......+ ... . .+ ..+.+++. .-++.++++|... | -+++++|......
T Consensus 72 ~~~~~~-~~~~~~~iPvV~~~~~~~-~~~~~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~ 146 (288)
T 1gud_A 72 NLVMPV-ARAWKKGIYLVNLDEKID-MDNLKKAGGNVEAFVTTDNV---AVGAKGASFIIDKLGAEGGEVAIIEGKAGNA 146 (288)
T ss_dssp TTHHHH-HHHHHTTCEEEEESSCCC-HHHHHHTTCCCSEEEECCHH---HHHHHHHHHHHHHHGGGCEEEEEEECSTTCH
T ss_pred HHHHHH-HHHHHCCCeEEEECCCCC-cccccccCCceeEEECCChH---HHHHHHHHHHHHHhCCCCCEEEEEeCCCCCc
Confidence 2 2233 334457999998865433 211 0 12 33455555 6667777777665 7 7999999865432
Q ss_pred -CCcCCHHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 189 -GNDNTIPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 189 -g~~~~~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
.. ...+.+++.+++. |+++.... . .+.+...-...++++.+ ..+++| ++.+...|..+++++++.|+
T Consensus 147 ~~~-~R~~Gf~~al~~~~g~~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~ 217 (288)
T 1gud_A 147 SGE-ARRNGATEAFKKASQIKLVASQ--P-ADWDRIKALDVATNVLQRNPNIKAI-YCANDTMAMGVAQAVANAGK 217 (288)
T ss_dssp HHH-HHHHHHHHHHHTCTTEEEEEEE--E-CTTCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHTTC
T ss_pred hHh-HHHHHHHHHHHhCCCcEEEEee--c-CCccHHHHHHHHHHHHHhCCCceEE-EECCCchHHHHHHHHHhcCC
Confidence 22 3467788899887 88765432 2 12333333344444432 345665 45677788899999999997
No 142
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.11 E-value=0.0017 Score=68.78 Aligned_cols=123 Identities=12% Similarity=0.066 Sum_probs=73.5
Q ss_pred hhhHhhh-cCCcEEEecCCcHHH-----hhhcCCCCCcC--ccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCcc
Q 044527 672 IQQIKLA-SMDNIGSQLGSVVPG-----ALSNLNFKDSR--LKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAH 743 (860)
Q Consensus 672 ~~~~~~~-~~~~i~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~ 743 (860)
+..++++ +|++|++..++.... +++..+..... ++.+ +..+.+.+|.+|++|+++...++......+...+
T Consensus 145 I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~ 223 (341)
T 3un6_A 145 LNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGK 223 (341)
T ss_dssp GGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCE
T ss_pred CCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeE
Confidence 3445566 899999987544332 33444443333 3333 4667889999999999999988877665554322
Q ss_pred ceeeccccccccCceEEEeccC----Cc-----chHHHHHHHHHHhhcchHHHHHHHHcCC
Q 044527 744 YTTAAAKYTTSTNGFGFVFQKG----SP-----LVHDISRAIARLREEGTLAKIENVWFNT 795 (860)
Q Consensus 744 l~~~~~~~~~~~~~~~~~~~k~----sp-----l~~~in~~i~~l~e~G~~~~~~~~~~~~ 795 (860)
.......+........+++++. .| +.+.++++...+.+++.-.++..+|+..
T Consensus 224 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 284 (341)
T 3un6_A 224 TLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQ 284 (341)
T ss_dssp EEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSS
T ss_pred EEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhCc
Confidence 2222222200112256676655 44 6666777777777776444677777764
No 143
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.09 E-value=0.021 Score=59.63 Aligned_cols=207 Identities=10% Similarity=0.049 Sum_probs=111.5
Q ss_pred ceEEEEEEEec---CC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 41 DEVHVGIILDM---RS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 41 ~~i~IG~l~~~---~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
++.+||++.|. +. +.-.....|++.+.++. + +++.+. ++..+ ....+....++++ ++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~----g---~~~~~~--~~~~~-~~~~~~l~~l~~~-~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN----N---AKCKYV--TASTD-AEYVPSLSAFADE-NMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT----T---CEEEEE--ECCSG-GGHHHHHHHHHHT-TCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh----C---CeEEEE--eCCCH-HHHHHHHHHHHHc-CCCEEEECCh
Confidence 45789999972 22 22334445555554442 2 454443 33222 2234555666665 7888886433
Q ss_pred ChhHHHHHHHhhcC-CCCcEEecccCCCcccccceEeecCCCchhHHHHHHH----HHHHhhCCC-cEEEEEEecCC-CC
Q 044527 117 TPTGAQILADLGSR-AKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGI----SDFISVFKW-KEVILIHEDNT-WG 189 (860)
Q Consensus 117 ~s~~~~~~~~~~~~-~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai----~~~l~~~~w-~~v~ii~~~~~-~g 189 (860)
... .++..++.. .++|++......+ ...+ +-.... +. .++..+ +..+.+.|. ++|++|..... ..
T Consensus 72 -~~~-~~~~~~a~~~p~~p~v~id~~~~-~~~~-~~~v~~-d~---~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~ 143 (318)
T 2fqx_A 72 -FLV-EAVIETSARFPKQKFLVIDAVVQ-DRDN-VVSAVF-GQ---NEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMM 143 (318)
T ss_dssp -TTH-HHHHHHHHHCTTSCEEEESSCCC-SCTT-EEEEEE-CH---HHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTT
T ss_pred -hHH-HHHHHHHHHCCCCEEEEEcCccC-CCCC-EEEEEe-ch---HHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHH
Confidence 211 224444444 3899988764321 1222 211222 33 333333 455555565 89999986542 22
Q ss_pred CcCCHHHHHHHHhhCCceEeEEEeccCCCC-ChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 190 NDNTIPYLFDSLHDNDIDIARRTSISLASS-THDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 190 ~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
. ...+.+++.+++.|.++.....+. ... +...-....+++.+.++++|+ ++....+..++++++++|+. +.-+++
T Consensus 144 ~-~r~~Gf~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~a~~ll~~~~daI~-~~~d~~a~Gv~~a~~e~g~~-P~dv~v 219 (318)
T 2fqx_A 144 P-LFEAGFEAGVKAVDPDIQVVVEVA-NTFSDPQKGQALAAKLYDSGVNVIF-QVAGGTGNGVIKEARDRRLN-GQDVWV 219 (318)
T ss_dssp H-HHHHHHHHHHHHHCTTCEEEEEEC-SCSSCHHHHHHHHHHHHHTTCCEEE-EECGGGHHHHHHHHHHHHHT-TCCCEE
T ss_pred H-HHHHHHHHHHHHHCCCCEEEEEEc-cCccCHHHHHHHHHHHHHCCCcEEE-ECCCCCchHHHHHHHhhhhc-cCCcEE
Confidence 2 456778888888776544332222 112 222333445555556788875 45556777889999998876 554555
Q ss_pred ec
Q 044527 269 AT 270 (860)
Q Consensus 269 ~~ 270 (860)
++
T Consensus 220 iG 221 (318)
T 2fqx_A 220 IG 221 (318)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 144
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.05 E-value=0.015 Score=63.34 Aligned_cols=205 Identities=6% Similarity=-0.022 Sum_probs=121.4
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChh
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPT 119 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~ 119 (860)
..+-+||+++|.+.+.-.....+++-+.++-+ +.+.+...++. .. ....+.. .+|++||-... +
T Consensus 23 ~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g-------~~~~i~~~~~~---~~---~i~~l~~-~~vDGiIi~~~-~- 86 (412)
T 4fe7_A 23 TKRHRITLLFNANKAYDRQVVEGVGEYLQASQ-------SEWDIFIEEDF---RA---RIDKIKD-WLGDGVIADFD-D- 86 (412)
T ss_dssp CCCEEEEEECCTTSHHHHHHHHHHHHHHHHHT-------CCEEEEECC-C---C------------CCCSEEEEETT-C-
T ss_pred CCCceEEEEeCCcchhhHHHHHHHHHHHHhcC-------CCeEEEecCCc---cc---hhhhHhc-CCCCEEEEecC-C-
Confidence 55789999998665555566667776666542 44544443321 11 1233444 47888775323 2
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccc--cceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC----CCcCC
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLT--SYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW----GNDNT 193 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls--~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~----g~~~~ 193 (860)
......+...++|+|......+ ... ..+-.+..++. .-+..+++.+...|-++++++...... .. ..
T Consensus 87 --~~~~~~l~~~~iPvV~i~~~~~-~~~~~~~~~~V~~D~~---~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~-~R 159 (412)
T 4fe7_A 87 --KQIEQALADVDVPIVGVGGSYH-LAESYPPVHYIATDNY---ALVESAFLHLKEKGVNRFAFYGLPESSGKRWAT-ER 159 (412)
T ss_dssp --HHHHHHHTTCCSCEEEEEECCS-SGGGSCSSEEEEECHH---HHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHH-HH
T ss_pred --hHHHHHHhhCCCCEEEecCCcc-ccccCCCCCEEEeCHH---HHHHHHHHHHHHcCCceEEEecccccccccHHH-HH
Confidence 2334456778999998875543 221 13444556666 777888888888899999999876543 33 45
Q ss_pred HHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh--cCCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 194 IPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK--SLDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~--~~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
.+.+++.+++.|+.............+.......+.++. ...+++| ++++...+..+++.+++.|+..++-+-+
T Consensus 160 ~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI-~~~nD~~A~g~~~al~~~G~~vP~disv 235 (412)
T 4fe7_A 160 EYAFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGI-IAVTDARARHILQVCEHLHIPVPEKLCV 235 (412)
T ss_dssp HHHHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEE-EESSHHHHHHHHHHHHHHTCCTTTTSEE
T ss_pred HHHHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEE-EEEecHHHHHHHHHHHHcCCCCCceEEE
Confidence 788899999998764332211101112223333443332 2356666 4667788889999999999865543333
No 145
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.02 E-value=0.025 Score=59.59 Aligned_cols=201 Identities=8% Similarity=-0.011 Sum_probs=116.9
Q ss_pred CceEEEEEEEecC---CcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCC
Q 044527 40 SDEVHVGIILDMR---SWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~---~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~ 116 (860)
+++.+||++.+-. .........|++.+.++.+ -++++.+.++..+.....+...+++++ ++.+||+...
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G-------~~~~~~~~e~~~~~~d~~~~l~~l~~~-g~d~Ii~~g~ 95 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG-------DKVETTFLENVAEGADAERSIKRIARA-GNKLIFTTSF 95 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT-------TTEEEEEECSCCTTHHHHHHHHHHHHT-TCSEEEECSG
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC-------CceEEEEEecCCCHHHHHHHHHHHHHC-CCCEEEECCH
Confidence 5679999999621 1223445566666655543 135566666655555566777778876 8999998644
Q ss_pred ChhHHHHHHHhhcCC-CCcEEecccCCC-cccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCH
Q 044527 117 TPTGAQILADLGSRA-KIPIISLFTTLP-NSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTI 194 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~-~ip~Is~~a~~~-~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~ 194 (860)
....++..++.++ ++|++-.....+ ..+..++++... ...++-.++.++.+ -++|++|............
T Consensus 96 --~~~~~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~~~e----g~ylaG~~A~~~tk--~~kIGfVgg~~~p~v~~~~ 167 (356)
T 3s99_A 96 --GYMDPTVKVAKKFPDVKFEHATGYKTADNMSAYNARFYE----GRYVQGVIAAKMSK--KGIAGYIGSVPVPEVVQGI 167 (356)
T ss_dssp --GGHHHHHHHHTTCTTSEEEEESCCCCBTTEEEEEECHHH----HHHHHHHHHHHHCS--SCEEEEEECCCCHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCCEEEEEeccccCCcEEEEEechhH----HHHHHHHHHHHhcC--CCEEEEECCCccHHHHHHH
Confidence 4455667777765 788886653222 011113343221 11333334444433 4799999865432111346
Q ss_pred HHHHHHHhhCCceEeEEEeccCCC-CChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 195 PYLFDSLHDNDIDIARRTSISLAS-STHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
..|.+.+++.+.++.....+. .+ .+...-....+.+.+.++|+|+...+.. .++++|++.|.
T Consensus 168 ~GF~~G~k~~np~i~v~~~~~-g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 168 NSFMLGAQSVNPDFRVKVIWV-NSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHTTCTTCEEEEEEC-SSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCEEEEEEC-CCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 778888888776654433333 22 2233334555666677999988776653 57899998873
No 146
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.00 E-value=0.009 Score=60.99 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=126.1
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
.++-+||++.|... +.-.....+++-+.++. | +++ +.+.++..++..-.+....++.+ ++++||-... .
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~----g---~~~-~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~-~ 77 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE----G---YTA-LISFSTNSDVKKYQNAIINFENN-NVDGIITSAF-T 77 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT----T---CEE-EEEECSSCCHHHHHHHHHHHHHT-TCSEEEEECC-C
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC----C---CCE-EEEEeCCCChHHHHHHHHHHHhC-CCCEEEEcch-H
Confidence 34678999998644 22344555555554442 2 440 34566667777766666677666 8888764212 1
Q ss_pred hHHHHHHHhhcCCCCcEEecccC-CCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTT-LPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNT--WGNDNTIP 195 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~-~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~ 195 (860)
...+...++|+|..... .+ .. .+ .+..++. .-+..+++.+. .|.++++++..... ... ...+
T Consensus 78 ------~~~~~~~~iPvV~~~~~~~~-~~--~~-~V~~D~~---~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~-~R~~ 142 (277)
T 3hs3_A 78 ------IPPNFHLNTPLVMYDSANIN-DD--IV-RIVSNNT---KGGKESIKLLS-KKIEKVLIQHWPLSLPTIR-ERIE 142 (277)
T ss_dssp ------CCTTCCCSSCEEEESCCCCC-SS--SE-EEEECHH---HHHHHHHHTSC-TTCCEEEEEESCTTSHHHH-HHHH
T ss_pred ------HHHHHhCCCCEEEEcccccC-CC--CE-EEEEChH---HHHHHHHHHHH-hCCCEEEEEeCCCcCccHH-HHHH
Confidence 22356679999998754 33 21 34 5666666 77788888888 99999999986643 223 4568
Q ss_pred HHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 196 YLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
.+++.+++.|+++... ... .+.+ ...+.++.+ .++++| ++.+...+..+++++++.|+..++-+-++
T Consensus 143 Gf~~~l~~~g~~~~~~-~~~---~~~~--~~~~~~~l~~~~~~~ai-~~~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 143 AMTAEASKLKIDYLLE-ETP---ENNP--YISAQSALNKSNQFDAI-ITVNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp HHHHHHHHTTCEEEEE-ECC---SSCH--HHHHHHHHHTGGGCSEE-ECSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHCCCCCCCC-Ccc---CCch--HHHHHHHHcCCCCCCEE-EECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8899999999887664 333 1111 334444433 356766 45667788899999999998655544443
No 147
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.00 E-value=0.016 Score=61.45 Aligned_cols=204 Identities=9% Similarity=0.046 Sum_probs=114.6
Q ss_pred ceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCC-HHHHHHHHHHhhccCCeEEEE--ecCC
Q 044527 41 DEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGD-PFHALTTASNLMQNVDLQAII--CIGM 116 (860)
Q Consensus 41 ~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~-~~~a~~~~~~li~~~~v~avi--Gp~~ 116 (860)
.+.+||++.|... +.-.....+++-+.++ . ++.+.+ .++..+ +....+....++.+ ++++|| +|..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~---~----g~~~~~--~~~~~~~~~~~~~~l~~l~~~-~vdGiIi~~~~~ 129 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQ---L----GASVVV--SMVERSGVEACKTAVHNLLAQ-RVSGLIINYPLD 129 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHH---T----TCEEEE--EECCSSSHHHHHHHHHHHHTT-TCSCEEEESCCC
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHH---c----CCEEEE--EeCCCCcHHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence 4678999998533 2223344455544443 2 255554 333333 44444445556655 787765 3444
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCcCCH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GNDNTI 194 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~~~~ 194 (860)
... .....+...++|+|....... . + +-.+..++. .-+..++++|...|.++|++|...... .. ...
T Consensus 130 -~~~--~~~~~~~~~~iPvV~i~~~~~-~--~-~~~V~~d~~---~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~-~R~ 198 (349)
T 1jye_A 130 -DQD--AIAVEAACTNVPALFLDVSDQ-T--P-INSIIFSHE---DGTRLGVEHLVALGHQQIALLAGPLSSVSAR-LRL 198 (349)
T ss_dssp -HHH--HHHHHHHTTTSCEEESSSCTT-S--S-SCEEEECHH---HHHHHHHHHHHHHTCCSEEEEECCTTSHHHH-HHH
T ss_pred -Chh--HHHHHHhhCCCCEEEEcccCC-C--C-CCEEEEchH---HHHHHHHHHHHHCCCCEEEEEeCCCCCccHH-HHH
Confidence 322 222334457899998864321 1 1 122344444 556667777766799999999865432 23 456
Q ss_pred HHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEEe
Q 044527 195 PYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWIA 269 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i~ 269 (860)
+.+++.+++.|+++.... . .+....+-...+.++.+ ..+++|+ +++...+..+++.+++.|+..++-+-++
T Consensus 199 ~Gf~~al~~~gi~~~~~~--~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 199 AGWHKYLTRNQIQPIAER--E-GDWSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp HHHHHHHHHTTCCCSEEE--E-CCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred HHHHHHHHHcCCCccccc--c-CCCChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 788899999998654322 1 11222222333344332 3467764 5567778889999999998655444443
No 148
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=96.96 E-value=0.023 Score=57.60 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=114.5
Q ss_pred EEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 44 HVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 44 ~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
+||++.|... +.-.....+++-+.++.+ +++. +.++..++..-.+....++.+ +|+++|- |.. +...
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g-------~~~~--~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~-~~~~ 71 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKLG-------YNLV--VLDSQNNPAKELANVQDLTVR-GTKILLINPTD-SDAV 71 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CEEE--EEECTTCHHHHHHHHHHHTTT-TEEEEEECCSS-TTTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHcC-------cEEE--EeCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC-hHHH
Confidence 5898887543 223345555555555432 4443 345556766656666666665 8998764 333 3222
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC--CCcEEEEEEecCCC--CCcCCHHHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF--KWKEVILIHEDNTW--GNDNTIPYL 197 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~--~w~~v~ii~~~~~~--g~~~~~~~l 197 (860)
......+...++|+|......+ .. +....+..++. .-++.++++|... +-++++++...... .. ...+.+
T Consensus 72 ~~~~~~~~~~~iPvV~i~~~~~-~~-~~~~~V~~D~~---~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~-~R~~Gf 145 (271)
T 2dri_A 72 GNAVKMANQANIPVITLDRQAT-KG-EVVSHIASDNV---LGGKIAGDYIAKKAGEGAKVIELQGIAGTSAAR-ERGEGF 145 (271)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS-SS-CCSEEEEECHH---HHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHH-HHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCCCC-CC-ceeEEEecChH---HHHHHHHHHHHHHcCCCCeEEEEECCCCCccHh-HHHHHH
Confidence 2233445567999998865433 21 11223444555 5566677776554 56899999864332 23 456778
Q ss_pred HHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 198 FDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 198 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
++.+++.|+++..... ...+...-...++++.+ ..+++| ++.+...|..+++++++.|+
T Consensus 146 ~~al~~~g~~~~~~~~---~~~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~g~ 206 (271)
T 2dri_A 146 QQAVAAHKFNVLASQP---ADFDRIKGLNVMQNLLTAHPDVQAV-FAQNDEMALGALRALQTAGK 206 (271)
T ss_dssp HHHHHHHTCEEEEEEE---CTTCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCCEEEEecC---CCCCHHHHHHHHHHHHHhCCCccEE-EECCCcHHHHHHHHHHHcCC
Confidence 8999988987654321 11233333334444332 345654 56677788999999999996
No 149
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=96.85 E-value=0.1 Score=53.64 Aligned_cols=194 Identities=9% Similarity=0.063 Sum_probs=106.8
Q ss_pred ceEEEEEEEec--CC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 41 DEVHVGIILDM--RS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 41 ~~i~IG~l~~~--~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
++.+||++.|- +. +.-.....|++-+.++. + +++. +.++..++....+....++++ ++.+||....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~----g---~~~~--~~~~~~~~~~~~~~l~~l~~~-~vdgIi~~~~- 72 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL----D---VDVV--LEEGVNSEQKAHRRIKELVDG-GVNLIFGHGH- 72 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS----C---CEEE--EECCCCSHHHHHHHHHHHHHT-TCCEEEECST-
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh----C---CeEE--EEeCCCCHHHHHHHHHHHHHC-CCCEEEEcCH-
Confidence 45789999972 22 33344555665555442 2 4443 444444544445556666665 8999998544
Q ss_pred hhHHHHHHHhhcCC-CCcEEecccCCCcccccceEeecCCCchhHHHHHHHH-HHHhh-CCCcEEEEEEecCCCCCcCCH
Q 044527 118 PTGAQILADLGSRA-KIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGIS-DFISV-FKWKEVILIHEDNTWGNDNTI 194 (860)
Q Consensus 118 s~~~~~~~~~~~~~-~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~-~~l~~-~~w~~v~ii~~~~~~g~~~~~ 194 (860)
.. ..++..++..+ ++|++......+ . .+ +-.+...+ .++..++ .++.+ .+-++|++|..... . ...
T Consensus 73 ~~-~~~~~~~~~~~p~~p~v~id~~~~-~-~~-~~~v~~d~----~~g~~lag~la~~l~~~~~Ig~i~g~~~--~-~r~ 141 (296)
T 2hqb_A 73 AF-AEYFSTIHNQYPDVHFVSFNGEVK-G-EN-ITSLHFEG----YAMGYFGGMVAASMSETHKVGVIAAFPW--Q-PEV 141 (296)
T ss_dssp HH-HHHHHTTTTSCTTSEEEEESCCCC-S-SS-EEEEEECC----HHHHHHHHHHHHHTCSSSEEEEEESCTT--C-HHH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEecCcC-C-CC-EEEEEech----HHHHHHHHHHHHhhccCCeEEEEcCcCc--h-hhH
Confidence 32 23355555544 889988764322 1 12 22223333 3333333 32333 24589999986532 1 256
Q ss_pred HHHHHHHhhCCceEeEEEeccCCCC-ChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcC
Q 044527 195 PYLFDSLHDNDIDIARRTSISLASS-THDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLG 259 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~g 259 (860)
+.+++.+++.|.+ .....+. ... +...-....+++.+.++++|+ +++...+..+++++++.|
T Consensus 142 ~Gf~~~~~~~~~~-~~~~~~~-~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 142 EGFVDGAKYMNES-EAFVRYV-GEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHHTTCC-EEEEEEC-SSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCC-eEEEEee-ccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 7888999888875 3222222 112 222334445555556788775 455556777889999988
No 150
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.83 E-value=0.0012 Score=68.68 Aligned_cols=206 Identities=10% Similarity=0.068 Sum_probs=124.1
Q ss_pred CceEEEEEEEecCC-cchh-hHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCC
Q 044527 40 SDEVHVGIILDMRS-WTGK-ITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~-~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~ 116 (860)
..+-+||++.|... +.-. ....+++-+.++. ++.+. +.++..++....+....++.+ +|++||- |..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-------g~~~~--~~~~~~~~~~~~~~~~~l~~~-~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN-------GKTIL--IANTGGSSEREVEIWKMFQSH-RIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT-------TCEEE--EEECTTCHHHHHHHHHHHHHT-TCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC-------CCEEE--EEeCCCChHHHHHHHHHHHhC-CCCEEEEecCC
Confidence 34578999998754 3333 6677777666653 24544 455666777666666666665 7887763 222
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCcCCH
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GNDNTI 194 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~~~~ 194 (860)
... ....+...++|+|......+ ... .+..+..++. .-+..++++|...|.++|+++...... .. ...
T Consensus 81 -~~~---~~~~~~~~~iPvV~~~~~~~-~~~-~~~~V~~D~~---~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~ 150 (301)
T 3miz_A 81 -RRI---VDPESGDVSIPTVMINCRPQ-TRE-LLPSIEPDDY---QGARDLTRYLLERGHRRIGYIRLNPILLGAE-LRL 150 (301)
T ss_dssp -EEE---CCCCCTTCCCCEEEEEEECS-STT-SSCEEEECHH---HHHHHHHHHHHTTTCCSEEEEECCTTSHHHH-HHH
T ss_pred -ccH---HHHHHHhCCCCEEEECCCCC-CCC-CCCEEeeChH---HHHHHHHHHHHHcCCCeEEEEecCccchhHH-HHH
Confidence 222 33456677999998875444 221 1233455555 777888888888899999999876543 23 456
Q ss_pred HHHHHHHhhCCceEeEEEeccC----CCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHHHHHHHHHHcCCccCCeE
Q 044527 195 PYLFDSLHDNDIDIARRTSISL----ASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALASHLFLNAKKLGMMSKGYV 266 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~~~~~----~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~~il~~a~~~gl~~~~~~ 266 (860)
+.+++.+++.|+++.....+.. .+.........+.++.+ ..+++|+ +++...+..+++++++.|+..++-+
T Consensus 151 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 227 (301)
T 3miz_A 151 DAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQDV 227 (301)
T ss_dssp HHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHHHC
T ss_pred HHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCe
Confidence 7888899988875422111110 11111000123333322 3567764 5667788899999999997544333
No 151
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=96.82 E-value=0.0053 Score=63.69 Aligned_cols=79 Identities=8% Similarity=-0.060 Sum_probs=55.0
Q ss_pred CccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEece-eecccc---cceeecccc
Q 044527 482 TLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDT-TITANR---SVYVDFTLP 557 (860)
Q Consensus 482 ~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~-~~t~~r---~~~~~fs~p 557 (860)
+..+.|+.+.+-+-+.++.|+ ++++.+. +....++.+|.+|++|+++++. .....| ...+.++.+
T Consensus 14 ~~~~~~~~va~~~g~~~~~Gl--~v~~~~~---------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~ 82 (302)
T 3ix1_A 14 NAVHTFLYVAIENGYFAEEGL--DVDIVFP---------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASV 82 (302)
T ss_dssp CGGGHHHHHHHHTTHHHHTTE--EEEEECC---------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEE
T ss_pred CcccHHHHHHHHcChHHHcCC--cEEEecC---------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEE
Confidence 345678888888888899986 5555544 2345899999999999998762 222233 345566667
Q ss_pred ccccceEEEEecCC
Q 044527 558 YTDMGIGMIVPIDQ 571 (860)
Q Consensus 558 ~~~~~~~~lv~~~~ 571 (860)
+...+..++++++.
T Consensus 83 ~~~~~~~l~~~~~s 96 (302)
T 3ix1_A 83 VRSPLNHVMFLAEQ 96 (302)
T ss_dssp ECSCCEEEEEEGGG
T ss_pred eccCCEEEEEECCC
Confidence 76677888887764
No 152
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=96.74 E-value=0.05 Score=57.09 Aligned_cols=198 Identities=10% Similarity=0.017 Sum_probs=121.6
Q ss_pred CceEEEEEEEecCC-cchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 40 SDEVHVGIILDMRS-WTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 40 ~~~i~IG~l~~~~~-~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
..+-+||++.|... +.-.....+++-+.++.+ +.+.+ .++.. +....+....++.+ ++++||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~--~~~~~-~~~~~~~~~~l~~~-~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAG-------YQMLV--AEANS-VQAQDVVMESLISI-QAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHT-------CEEEE--EECCS-HHHHHHHHHHHHHH-TCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCC-------CEEEE--ECCCC-hHHHHHHHHHHHhC-CCCEEEEcch--
Confidence 34578999998643 334455666666665532 45544 44444 55555555666665 8988875321
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCC--CCcCCHHH
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTW--GNDNTIPY 196 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~--g~~~~~~~ 196 (860)
...+...++|+|......+ . ..+..+..++. .-+..+++.|...|-++++++...... .. ...+.
T Consensus 129 ------~~~~~~~~iPvV~~~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~-~R~~G 195 (333)
T 3jvd_A 129 ------VGSIAPEGIPMVQLTRGEL-G--PGFPRVLCDDE---AGFFQLTESVLGGSGMNIAALVGEESLSTTQ-ERMRG 195 (333)
T ss_dssp ------TTCCC-CCSCEEEECC-------CCSCEEEECHH---HHHHHHHHHHCCSSSCEEEEEESCTTSHHHH-HHHHH
T ss_pred ------HHHHhhCCCCEEEECccCC-C--CCCCEEEEChH---HHHHHHHHHHHHCCCCeEEEEeCCCCCccHH-HHHHH
Confidence 3346677999999875443 2 12233455555 677888888888899999999876432 23 45788
Q ss_pred HHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC-CCeEEEEEeCHHHHHHHHHHHHHcCCccCCeEEE
Q 044527 197 LFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL-DTKVFVVHMTHALASHLFLNAKKLGMMSKGYVWI 268 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~viil~~~~~~~~~il~~a~~~gl~~~~~~~i 268 (860)
+++.+++.|+..... .. ..+..+-...+.++.+. .+++|+ +++...+..+++.+++.|+..++-+-+
T Consensus 196 f~~al~~~g~~~~~~--~~--~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disv 263 (333)
T 3jvd_A 196 ISHAASIYGAEVTFH--FG--HYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVI 263 (333)
T ss_dssp HHHHHHHTTCEEEEE--EC--CSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHCCCCEEEe--cC--CCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 899999999872221 01 12334444445444333 367764 567778888999999999865543333
No 153
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=96.68 E-value=0.012 Score=62.25 Aligned_cols=136 Identities=20% Similarity=0.137 Sum_probs=92.2
Q ss_pred HHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeec----ccccceeeccccccccceEEEEecCCC
Q 044527 497 IDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTIT----ANRSVYVDFTLPYTDMGIGMIVPIDQN 572 (860)
Q Consensus 497 a~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t----~~r~~~~~fs~p~~~~~~~~lv~~~~~ 572 (860)
.++.|+ ++++.+. ++|..++..+.+|++|+++++.... .++.....++.++...+..+++++...
T Consensus 59 ~~~~g~--~v~~~~~---------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 127 (346)
T 3qsl_A 59 FKDEGL--DVSIADF---------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNL 127 (346)
T ss_dssp HHHTTC--EEEEEEC---------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTC
T ss_pred hHhhCC--eEEEEec---------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcc
Confidence 456776 4555543 3789999999999999988765443 455666777777776677888877641
Q ss_pred CCcceecccCChhHHHHHHHHHHHHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccccccccccchhhhHHHHH
Q 044527 573 NNMWIFLKPLKPNLWLTIAALFVLTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQREKLFSNLSKFVVIVWV 652 (860)
Q Consensus 573 ~~~~~~~~pF~~~vW~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~R~l~~~w~ 652 (860)
+.
T Consensus 128 ~~------------------------------------------------------------------------------ 129 (346)
T 3qsl_A 128 PG------------------------------------------------------------------------------ 129 (346)
T ss_dssp TT------------------------------------------------------------------------------
T ss_pred cC------------------------------------------------------------------------------
Confidence 11
Q ss_pred HHHHHHHHHhhhccccccchhhHhhhcCCcEEEe-cCCcHHHh----hhcCCCCC--cCccccCCHHHHHHHHhcCCcEE
Q 044527 653 FVVLILSSSYTATLASMLTIQQIKLASMDNIGSQ-LGSVVPGA----LSNLNFKD--SRLKKYNSAEEYANALSMGSISA 725 (860)
Q Consensus 653 ~~~lil~~~Yta~L~s~lt~~~~~~~~~~~i~~~-~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~ 725 (860)
+..+++++|++|++. .++..... ++..+... .+++.++...+.+.+|.+|++|+
T Consensus 130 -------------------i~s~~DL~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa 190 (346)
T 3qsl_A 130 -------------------YKGPADLKGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDA 190 (346)
T ss_dssp -------------------CCSGGGGTTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSE
T ss_pred -------------------CCChHHcCCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccE
Confidence 233344589999998 56654333 33444433 24455666778999999999999
Q ss_pred EEcchHHHHHHHhcc
Q 044527 726 IVDEIPYVRAFLSKY 740 (860)
Q Consensus 726 ~i~~~~~~~~~~~~~ 740 (860)
++...+.......+.
T Consensus 191 ~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 191 ISNTDPVVSMLETSG 205 (346)
T ss_dssp EEEETTHHHHHHHTT
T ss_pred EEecchhHHHHHhCC
Confidence 999887776555443
No 154
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=96.49 E-value=0.11 Score=54.21 Aligned_cols=215 Identities=11% Similarity=0.127 Sum_probs=129.8
Q ss_pred CceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcc------cEEEEEEecCCCCH-----HHHHHHHHHhhccCCe
Q 044527 40 SDEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCK------TRLILHSRDSQGDP-----FHALTTASNLMQNVDL 108 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~------~~l~~~~~D~~~~~-----~~a~~~~~~li~~~~v 108 (860)
..+.+||++.+..+ .+.+..++++-.+++.|..+.... ..+++++..+-.|+ ..+++...++....++
T Consensus 10 ~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 45799998776543 457889999999999998654221 23445554433333 3457788888888889
Q ss_pred EEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCc--cccc--ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEe
Q 044527 109 QAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPN--SLTS--YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHE 184 (860)
Q Consensus 109 ~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~--~ls~--~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~ 184 (860)
.+||.-.. ..........+.+.+++.|-..+.... ...+ .-..+..++. .-+..+++.|...|-+++++|..
T Consensus 89 k~II~n~~-~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~di~V~~Dn~---~Ggy~A~~~Li~~Ghk~Ia~Isg 164 (371)
T 3qi7_A 89 QAIVVSTD-QAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVDVNLGVSAE---ERGKVLAERSKEMGAKAFIHYAS 164 (371)
T ss_dssp EEEEEECS-SCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSSEEEECCHH---HHHHHHHHHHHHTTCSCEEEEEE
T ss_pred eEEEEECC-CcchHHHHHHHHhcCCCEEEEeccccccchhhcccCceEEEeChH---HHHHHHHHHHHHCCCCEEEEEec
Confidence 98887544 222123344455555555444332220 1100 1123444444 55566778899999999999987
Q ss_pred cCCCCC---cCCHHHHHHHHhhCCceEeEEEeccCCCCCh----HHHHHHHHh-----hhcCCCeEEEEEeCHHHHHHHH
Q 044527 185 DNTWGN---DNTIPYLFDSLHDNDIDIARRTSISLASSTH----DQIIEKLSM-----LKSLDTKVFVVHMTHALASHLF 252 (860)
Q Consensus 185 ~~~~g~---~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~----~~~~~~l~~-----i~~~~~~viil~~~~~~~~~il 252 (860)
...... ....+.+++++++.|+++..... + +... ......+.+ +.+.+..--|++++...|..++
T Consensus 165 p~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~-~--d~t~e~G~~~a~~lL~~~~~~~~~~~~~~TAIFatND~mAiG~i 241 (371)
T 3qi7_A 165 TDDLKDVNIAKRLEMIKETCKNIGLPFVQVNT-P--NINTEEDKNKVKQFLNEDIEKQVKKYGKDINVFGVNEYMDEVIL 241 (371)
T ss_dssp TTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEE-C--CCSSTHHHHHHHHHHHHHHHHHHHHHCSCCEEEESSHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHcCCCceeecC-C--CCchHHHHHHHHHHHhccccchhhccCCCcEEEECCHHHHHHHH
Confidence 543221 02467789999999998765432 2 2222 222222321 2222332355788889999999
Q ss_pred HHHHHcCCcc
Q 044527 253 LNAKKLGMMS 262 (860)
Q Consensus 253 ~~a~~~gl~~ 262 (860)
+++.+.|+..
T Consensus 242 kal~e~Gi~V 251 (371)
T 3qi7_A 242 TKALELKYIV 251 (371)
T ss_dssp HHHHHHCCBB
T ss_pred HHHHHcCCcc
Confidence 9999999643
No 155
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.44 E-value=0.007 Score=50.93 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=61.2
Q ss_pred HHHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccch
Q 044527 595 VLTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTI 672 (860)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~ 672 (860)
++.+.+++.+++..+ +....++.+++|+++.++...| ...|.+..+|++.++|.++++.+.++..+.+.+.++.
T Consensus 20 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 20 EEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred HHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667776532 2334578999999999999887 4468999999999999999999999999999998876
Q ss_pred hhH
Q 044527 673 QQI 675 (860)
Q Consensus 673 ~~~ 675 (860)
..-
T Consensus 96 ~~~ 98 (103)
T 2k1e_A 96 REE 98 (103)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 156
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=96.17 E-value=0.11 Score=53.68 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=63.2
Q ss_pred CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceee-----------ccc--c-------ccccCceEEEec
Q 044527 704 RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTA-----------AAK--Y-------TTSTNGFGFVFQ 763 (860)
Q Consensus 704 ~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~-----------~~~--~-------~~~~~~~~~~~~ 763 (860)
..+.|....+.+..|..|++|+++.+......+++.. +++.+ ++. + ......++++.|
T Consensus 167 ~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap 244 (312)
T 2f5x_A 167 LTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSG--KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAP 244 (312)
T ss_dssp EEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTT--SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEE
T ss_pred EEeccCChHHHHHHHHcCCccEEEechHHHHHHHHcC--CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEc
Confidence 3568999999999999999999999877665555542 22222 110 0 001223688999
Q ss_pred cCCc--chHHHHHHHHHHhhcchHHHHHHHHc
Q 044527 764 KGSP--LVHDISRAIARLREEGTLAKIENVWF 793 (860)
Q Consensus 764 k~sp--l~~~in~~i~~l~e~G~~~~~~~~~~ 793 (860)
++-| ..+++++++.++.+++.+.+...++-
T Consensus 245 ~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 276 (312)
T 2f5x_A 245 KGTPKPVVDKLVKSLQAGLADPKFQERMKQLG 276 (312)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 9977 99999999999999998877666553
No 157
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=95.95 E-value=0.048 Score=58.14 Aligned_cols=206 Identities=10% Similarity=0.040 Sum_probs=111.4
Q ss_pred CceEEEEEEEecCCcc--hhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCC
Q 044527 40 SDEVHVGIILDMRSWT--GKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGM 116 (860)
Q Consensus 40 ~~~i~IG~l~~~~~~~--g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~ 116 (860)
..+-+||+++|..... ...+...+..++++.=+ ++.+.+...+...+. .-.+....+.. .+|++||- |..
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~-----g~~~~~~~~~~~~~~-~~~~~~~~l~~-~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG-----DTQLTLIPASPASSV-DHVSAQQLVNN-AAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS-----SCEEEEEECCCCTTC-CHHHHHHHHHT-CCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh-----hCCEEEEEcCCCccH-HHHHHHHHHHh-CCCCEEEEecCC
Confidence 3457899999864221 11222223333333211 367766655533221 12223334444 47777653 322
Q ss_pred ChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEec-----------
Q 044527 117 TPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHED----------- 185 (860)
Q Consensus 117 ~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~----------- 185 (860)
. .. .....+...++|+|......+ . ..+..+..++. .-+..+++.|...|.+++++|...
T Consensus 139 -~-~~-~~~~~l~~~~iPvV~i~~~~~-~--~~~~~V~~D~~---~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~ 209 (366)
T 3h5t_A 139 -K-GD-PHIDAIRARGLPAVIADQPAR-E--EGMPFIAPNNR---KAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVT 209 (366)
T ss_dssp -T-TC-HHHHHHHHHTCCEEEESSCCS-C--TTCCEEEECHH---HHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECC
T ss_pred -C-Ch-HHHHHHHHCCCCEEEECCccC-C--CCCCEEEeChH---HHHHHHHHHHHHCCCCcEEEEecccccccccCccc
Confidence 1 11 222344556999998864332 1 12233455555 667888888888899999999832
Q ss_pred --------CCCCCcCCHHHHHHHHhhCCceEeEEE-eccCCCCChHHHHHHHHhhh--cCCCeEEEEEeCHHHHHHHHHH
Q 044527 186 --------NTWGNDNTIPYLFDSLHDNDIDIARRT-SISLASSTHDQIIEKLSMLK--SLDTKVFVVHMTHALASHLFLN 254 (860)
Q Consensus 186 --------~~~g~~~~~~~l~~~~~~~g~~i~~~~-~~~~~~~~~~~~~~~l~~i~--~~~~~viil~~~~~~~~~il~~ 254 (860)
..... ...+.+++.+++.|+.+.... ... .......-...+.++. ...+++|+ +++...+..+++.
T Consensus 210 ~~~~~~~~~~~~~-~R~~Gf~~al~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~a 286 (366)
T 3h5t_A 210 RERLENAQYQVQR-DRVRGAMEVFIEAGIDPGTVPIMEC-WINNRQHNFEVAKELLETHPDLTAVL-CTVDALAFGVLEY 286 (366)
T ss_dssp HHHHHTCCCTTHH-HHHHHHHHHHHHHTCCGGGSCEEEE-SSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHH
T ss_pred cccccccccchHH-HHHHHHHHHHHHCCCCCCcceEEEc-CCCCHHHHHHHHHHHHcCCCCCcEEE-ECCcHHHHHHHHH
Confidence 11222 346788899999887642100 001 1123333333444443 33567764 4667788889999
Q ss_pred HHHcCCccCC
Q 044527 255 AKKLGMMSKG 264 (860)
Q Consensus 255 a~~~gl~~~~ 264 (860)
+++.|+..++
T Consensus 287 l~~~G~~vP~ 296 (366)
T 3h5t_A 287 LKSVGKSAPA 296 (366)
T ss_dssp HHHTTCCTTT
T ss_pred HHHcCCCCCC
Confidence 9999976444
No 158
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.85 E-value=0.021 Score=49.66 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=58.6
Q ss_pred HHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhccccccchh
Q 044527 596 LTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQ 673 (860)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~ 673 (860)
+.+.+++.+++.. ++....++.+++|+++.++...| + ..|.+..+|++.++|.++++.+.++..+.+++.++..
T Consensus 42 ~~a~~~~~~E~~~----~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 42 AGSYLAVLAERGA----PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp HHHHHHHHHHTTS----TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhheeeecC----CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666543 12334578999999999999877 4 4689999999999999999999999999999888643
No 159
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=95.83 E-value=0.12 Score=53.08 Aligned_cols=88 Identities=11% Similarity=0.079 Sum_probs=63.7
Q ss_pred CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceee---c--------cc-------cc--cccCceEEEec
Q 044527 704 RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTA---A--------AK-------YT--TSTNGFGFVFQ 763 (860)
Q Consensus 704 ~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~---~--------~~-------~~--~~~~~~~~~~~ 763 (860)
..+.|....+.+..|..|++|+++.+......+++.. +++.+ . +. +. .....++++.|
T Consensus 158 ~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap 235 (301)
T 2qpq_A 158 VHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVP 235 (301)
T ss_dssp EEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEE
T ss_pred EEeccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEec
Confidence 4568999999999999999999999877665555432 22222 1 10 00 01234688999
Q ss_pred cCCc--chHHHHHHHHHHhhcchHHHHHHHHc
Q 044527 764 KGSP--LVHDISRAIARLREEGTLAKIENVWF 793 (860)
Q Consensus 764 k~sp--l~~~in~~i~~l~e~G~~~~~~~~~~ 793 (860)
++-| ..+++++++.++.+++.+.+..+++-
T Consensus 236 ~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g 267 (301)
T 2qpq_A 236 GATPMAVRQKLYDGIAKVMQRDDVQKKLADLG 267 (301)
T ss_dssp TTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 9976 99999999999999998888777663
No 160
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=95.54 E-value=0.2 Score=51.66 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=63.4
Q ss_pred CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhcc-Cccceee--------ccc-------cc--cccCceEEEeccC
Q 044527 704 RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKY-SAHYTTA--------AAK-------YT--TSTNGFGFVFQKG 765 (860)
Q Consensus 704 ~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~-~~~l~~~--------~~~-------~~--~~~~~~~~~~~k~ 765 (860)
..+.|....+.+..|..|++|+++.+......+++.. -.-|-+. ++. +. .....++++.|++
T Consensus 171 ~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g 250 (314)
T 2dvz_A 171 VHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKG 250 (314)
T ss_dssp EEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETT
T ss_pred EEcccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCC
Confidence 4568999999999999999999999877665555432 1111111 110 00 0123468899999
Q ss_pred Cc--chHHHHHHHHHHhhcchHHHHHHHHc
Q 044527 766 SP--LVHDISRAIARLREEGTLAKIENVWF 793 (860)
Q Consensus 766 sp--l~~~in~~i~~l~e~G~~~~~~~~~~ 793 (860)
-| ..+++++++.++.+++.+.+...++-
T Consensus 251 ~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 251 TPMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 77 99999999999999988887766653
No 161
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.42 E-value=0.03 Score=50.04 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=57.1
Q ss_pred HHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccch
Q 044527 596 LTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTI 672 (860)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~ 672 (860)
+.+.+++.++... .+....++.+++|+++.++...| ...|.+..+|++.++|.++++.+.++..+.+.+.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555533 22234568899999999999877 4468999999999999999999999999999998844
No 162
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=95.40 E-value=0.027 Score=58.92 Aligned_cols=79 Identities=4% Similarity=-0.034 Sum_probs=52.2
Q ss_pred CccEeeeeHHHHHHHHHh----CCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecc-c---------
Q 044527 482 TLTVEGFCIDVFKAAIDT----LTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITA-N--------- 547 (860)
Q Consensus 482 ~~~~~G~~~~l~~~la~~----l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~-~--------- 547 (860)
.+.++.+...|.+.+.+. .|. ++++.+. +...+.++.+.+|++|+++....... .
T Consensus 42 gG~~~~~~~~la~~l~~~~~~~~g~--~v~v~~~---------~g~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~ 110 (327)
T 4ddd_A 42 TGVYYPIGGSICRFIASDYGKDNKI--ICSISST---------TGSVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEK 110 (327)
T ss_dssp TSSHHHHHHHHHHHHHHHHGGGTSE--EEEEECC---------CCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTT
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCe--EEEEEec---------CcHHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccc
Confidence 455667777888888887 664 4555442 25678899999999999986543221 1
Q ss_pred --ccceeeccccccccceEEEEecCC
Q 044527 548 --RSVYVDFTLPYTDMGIGMIVPIDQ 571 (860)
Q Consensus 548 --r~~~~~fs~p~~~~~~~~lv~~~~ 571 (860)
..+.+.+..+++.....+++++..
T Consensus 111 ~~~~~d~~~v~~~~~~~~~lvv~~ds 136 (327)
T 4ddd_A 111 MLPMDNLRMLASLHKEYLTIVVKKSS 136 (327)
T ss_dssp SCCCTTEEEEEEEEEEEEEEEEETTS
T ss_pred cCCCcchhehhccCCccEEEEEECCC
Confidence 123344455677777888888765
No 163
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.18 E-value=0.038 Score=50.17 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=57.8
Q ss_pred HHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhccccccch
Q 044527 596 LTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTI 672 (860)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~ 672 (860)
+.+.+++.++...+ +....++.+++|+++.++...| + ..|.+..+|++.++|.++++.+.++..+.+++.++.
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666665431 2334578999999999999887 4 468899999999999999999999999999887754
No 164
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.07 E-value=0.26 Score=48.49 Aligned_cols=128 Identities=8% Similarity=0.111 Sum_probs=84.2
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHH--------HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHH
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGA--------QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGI 167 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~--------~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai 167 (860)
.+++.+|... ++.+|+-+.+ +++. .....+.+..++|+++. +.++
T Consensus 56 ~~aa~~L~~a-g~d~i~~aCt-sas~~~G~~~~~~~~~~l~~~~~iPv~~~-------------------------~~A~ 108 (240)
T 3ixl_A 56 VDHARRLQKQ-GAAVVSLMCT-SLSFYRGAAFNAALTVAMREATGLPCTTM-------------------------STAV 108 (240)
T ss_dssp HHHHHHHHHT-TEEEEEECCH-HHHHTTCHHHHHHHHHHHHHHHSSCEEEH-------------------------HHHH
T ss_pred HHHHHHhccC-CCCEEEECCc-HHHHhcccchHHHHHHHHHhccCCCEECH-------------------------HHHH
Confidence 3445555544 8998887555 5443 23445555567887753 3466
Q ss_pred HHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccC-C-----CCChHHHHHHHHh-h-hcCCCeEE
Q 044527 168 SDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISL-A-----SSTHDQIIEKLSM-L-KSLDTKVF 239 (860)
Q Consensus 168 ~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~-~-----~~~~~~~~~~l~~-i-~~~~~~vi 239 (860)
++.+++.|-+||+++.+ |.. ...+.+++.+++.|++++....... . ..+...+...+++ + ...++|+|
T Consensus 109 ~~al~~~g~~rvglltp---y~~-~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai 184 (240)
T 3ixl_A 109 LNGLRALGVRRVALATA---YID-DVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI 184 (240)
T ss_dssp HHHHHHTTCSEEEEEES---SCH-HHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE
T ss_pred HHHHHHhCCCEEEEEeC---ChH-HHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE
Confidence 66777789999999986 666 6678889999999999876544320 0 1234566777777 7 77789999
Q ss_pred EEEeCHHHHHHHHHH
Q 044527 240 VVHMTHALASHLFLN 254 (860)
Q Consensus 240 il~~~~~~~~~il~~ 254 (860)
|+.|..=....++..
T Consensus 185 vL~CT~l~~l~~i~~ 199 (240)
T 3ixl_A 185 LLSSGGLLTLDAIPE 199 (240)
T ss_dssp EEECTTSCCTTHHHH
T ss_pred EEeCCCCchhhhHHH
Confidence 998875443333333
No 165
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=94.75 E-value=0.066 Score=47.57 Aligned_cols=56 Identities=7% Similarity=0.224 Sum_probs=49.6
Q ss_pred ccchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhccccccchh
Q 044527 618 HQFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQ 673 (860)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~ 673 (860)
.++.+++|+++.++...| + ..|.+..+|++.++|.++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999877 4 4689999999999999999999999999999888643
No 166
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.68 E-value=0.15 Score=51.72 Aligned_cols=100 Identities=8% Similarity=-0.161 Sum_probs=56.6
Q ss_pred hhcCCcEEEe-cCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcch-HHHHHHHhccCccceeecc---c-
Q 044527 677 LASMDNIGSQ-LGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEI-PYVRAFLSKYSAHYTTAAA---K- 750 (860)
Q Consensus 677 ~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~-~~~~~~~~~~~~~l~~~~~---~- 750 (860)
+++|++|++. .+++....++.. ....++ .+....+...++.+|++|+.+... ....+ .+. .++.+.+ .
T Consensus 100 DLkGK~Iav~~~~s~~~~ll~~~-l~~~~~-~~~~~~~~~~al~~G~vDa~~~~~~~~~~~-~~~---g~~~~~~~~~~~ 173 (280)
T 1zbm_A 100 SLDGKRIAVPGRYTTANLLLKLA-VEDFEP-VEMPFDRIIQAVLDEEVDAGLLIHEGQITY-ADY---GLKCVLDLWDWW 173 (280)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHH-CSSCEE-EECCGGGHHHHHHTTSSSEEEECSGGGGTG-GGG---TCEEEEEHHHHH
T ss_pred hcCCCEEEecCCCcHHHHHHHHH-hccCce-EecCHHHHHHHHHcCCCCEEEEechHHhHH-Hhc---CCeEeccHHHHH
Confidence 3489999996 445444334431 222233 334567889999999999988543 44332 221 2222211 0
Q ss_pred --cccccCc-eEEEeccC-Cc-chHHHHHHHHHHhhc
Q 044527 751 --YTTSTNG-FGFVFQKG-SP-LVHDISRAIARLREE 782 (860)
Q Consensus 751 --~~~~~~~-~~~~~~k~-sp-l~~~in~~i~~l~e~ 782 (860)
..+.+.+ ..++++++ .| +.+.|++++.+..+.
T Consensus 174 ~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 174 SEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 0001112 36788888 67 788888887776654
No 167
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=94.05 E-value=0.61 Score=45.15 Aligned_cols=69 Identities=10% Similarity=-0.077 Sum_probs=50.7
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEE
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv 567 (860)
+...++..+.++.. ++++.+... +...+..+|.+|++|+++....... ..+ -+.++....+++++
T Consensus 25 ~l~~~l~~~~~~~P-~v~i~~~~~----------~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l-~~~~l~~~~~~~v~ 89 (232)
T 3ho7_A 25 LLPRVFPIWKKELA-GLEIHVSEM----------QTSRCLASLLSGEIDMAIIASKAET---EGL-EDDLLYYEEFLGYV 89 (232)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEEC----------CHHHHHHHHHHTSCSEEEESSCCCC---TTE-EEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHCC-CcEEEEEeC----------CHHHHHHHHHcCCCCEEEEcCCCCC---CCe-EEEEecccCEEEEE
Confidence 55788999998886 467776654 6789999999999999986543222 222 25778888888888
Q ss_pred ecCC
Q 044527 568 PIDQ 571 (860)
Q Consensus 568 ~~~~ 571 (860)
++..
T Consensus 90 ~~~h 93 (232)
T 3ho7_A 90 SRCE 93 (232)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 7764
No 168
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.49 E-value=0.19 Score=41.47 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=51.4
Q ss_pred cchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhH
Q 044527 619 QFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQI 675 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~ 675 (860)
++.+++|+++.++...| + ..|.+..+|++.++|.++++.+.+...+.+++.++.+++
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 57899999999999877 4 468899999999999999999999999999998887766
No 169
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=93.06 E-value=1.7 Score=41.49 Aligned_cols=70 Identities=10% Similarity=0.040 Sum_probs=49.1
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+-.+++..+.++.. ++++.+... +.+.+...|.+|++|+++...... ...+ -+.++....++++
T Consensus 21 ~~l~~~l~~f~~~~P-~i~i~i~~~----------~~~~~~~~l~~g~~Di~i~~~~~~---~~~~-~~~~l~~~~~~~v 85 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWP-QVELDIVSG----------FQADPVGLLLQHRADLAIVSEAEK---QNGI-SFQPLFAYEMVGI 85 (222)
T ss_dssp HHHHHHHHHHHHHST-TEEEEEECC----------CCSCTHHHHHTTSCSEEEESCCCC---CTTE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEecC----------CHHHHHHHHHcCCcCEEEecCCCC---cCCe-EEEEeecCcEEEE
Confidence 344678899998885 356666653 456789999999999998643222 2222 2567888888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 86 ~~~~~ 90 (222)
T 4ab5_A 86 CAPDH 90 (222)
T ss_dssp ECTTS
T ss_pred ecCCC
Confidence 87765
No 170
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.05 E-value=0.25 Score=39.17 Aligned_cols=52 Identities=10% Similarity=0.164 Sum_probs=46.1
Q ss_pred cchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhcccccc
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASML 670 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~l 670 (860)
++.+++|++..++...| ...|.+..+|++...+.++++.+.+...+.+.+.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999877 44689999999999999999999999999887654
No 171
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=92.11 E-value=0.92 Score=46.94 Aligned_cols=98 Identities=11% Similarity=0.170 Sum_probs=56.8
Q ss_pred CcEEEec-CCcHHHh---h-hcCCCCC-cCccccCCHHHHHHHHhcC----CcEEEEcchHHHHHHHhccCccceeeccc
Q 044527 681 DNIGSQL-GSVVPGA---L-SNLNFKD-SRLKKYNSAEEYANALSMG----SISAIVDEIPYVRAFLSKYSAHYTTAAAK 750 (860)
Q Consensus 681 ~~i~~~~-~~~~~~~---~-~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 750 (860)
++|++.. ++..... + +..+... .+++.++...+...+|.+| ++|+++.+........+. +.++.+.+.
T Consensus 119 K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~~~--g~~~~~~d~ 196 (321)
T 2x7q_A 119 KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYYDN--HEIKQIDQI 196 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHHHT--TSEEEEEEE
T ss_pred ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEEecCccchhhccC--CceEEcccc
Confidence 7888875 5544321 2 2234332 3556667788899999999 999987665444333322 235544443
Q ss_pred cccccCc-eEEEeccC----Cc-----chHHHHHHHHHHhhc
Q 044527 751 YTTSTNG-FGFVFQKG----SP-----LVHDISRAIARLREE 782 (860)
Q Consensus 751 ~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e~ 782 (860)
. .+.+ .++++++. .| +.+.+.+++..+.++
T Consensus 197 ~--~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 197 Y--TPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp E--CSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred C--CCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 3 2322 46777765 34 555566666666654
No 172
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=92.08 E-value=8.9 Score=38.25 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=52.8
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCC------CCChHHHHHHHHhhhcCCCeEE
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLA------SSTHDQIIEKLSMLKSLDTKVF 239 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~vi 239 (860)
++++.++..|-+||+++.. |.. ...+.+++.+++.|+++......... ..+...+...++++.+.++|+|
T Consensus 136 A~~~al~~~g~~rvgvltp---~~~-~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaI 211 (273)
T 2xed_A 136 ALVEGLRALDAQRVALVTP---YMR-PLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDAL 211 (273)
T ss_dssp HHHHHHHHTTCCEEEEEEC---SCH-HHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEE
T ss_pred HHHHHHHHcCCCeEEEEcC---Chh-hhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEE
Confidence 3344445567799999963 554 45568889999999998664433200 1234557777788877889999
Q ss_pred EEE-eCHHH
Q 044527 240 VVH-MTHAL 247 (860)
Q Consensus 240 il~-~~~~~ 247 (860)
|+. |..-.
T Consensus 212 vLg~CT~l~ 220 (273)
T 2xed_A 212 VISCAVQMP 220 (273)
T ss_dssp EEESSSSSC
T ss_pred EEcCCCCcc
Confidence 999 86544
No 173
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=92.02 E-value=0.32 Score=41.42 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccchhh
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQ 674 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~ 674 (860)
++.+++|+++.++...| ...|.+..+|++.++|.++++.+.++..+.+.+.++..+
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~ 106 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 106 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999877 446889999999999999999999999999888775443
No 174
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=91.74 E-value=0.63 Score=52.65 Aligned_cols=117 Identities=9% Similarity=0.037 Sum_probs=75.6
Q ss_pred cchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhc-cccccchhhHh------------hhcCCcE
Q 044527 619 QFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTAT-LASMLTIQQIK------------LASMDNI 683 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~-L~s~lt~~~~~------------~~~~~~i 683 (860)
++..++|+++.++...| + ..|.+..+|++.++|.++++.+.++..+. +++++....++ ......+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hv 130 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDTRGHI 130 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTCCSCE
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCeE
Confidence 68899999999999877 4 45788899999999999999998888877 66666444443 0011223
Q ss_pred EEe-cCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcC-CcEEEEcchHHHHH
Q 044527 684 GSQ-LGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMG-SISAIVDEIPYVRA 735 (860)
Q Consensus 684 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~~i~~~~~~~~ 735 (860)
-+. .|..-....+........+...+..++.++.+.+. .+.++..|...-+-
T Consensus 131 iI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~ 184 (565)
T 4gx0_A 131 LIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHV 184 (565)
T ss_dssp EEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHH
T ss_pred EEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHH
Confidence 333 33333333333222334566777777777777665 56777777544333
No 175
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=91.65 E-value=0.024 Score=52.38 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=51.6
Q ss_pred ccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccchhh
Q 044527 616 RAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQ 674 (860)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~ 674 (860)
...++.+++|+++.++...| ...|.+..+|++.++|.++++++.++..+.+++.++...
T Consensus 64 ~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 64 QLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp CCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred ccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999877 446899999999999999999999999999999987544
No 176
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=91.59 E-value=0.53 Score=42.32 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=49.9
Q ss_pred cchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhH
Q 044527 619 QFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQI 675 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~ 675 (860)
++.+++|+++.++...| + ..|.+..+|++.++|.++++.+.++..+++.+.+..+.+
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 110 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSI 110 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999887 4 468899999999999999999999999999887766554
No 177
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.40 E-value=0.4 Score=49.42 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=50.0
Q ss_pred ccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccchh
Q 044527 616 RAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQ 673 (860)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~ 673 (860)
...++..++|+++.++...| ...|.+..+|++.+++.++++++.++-.+.+.+.++-+
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999877 44688999999999999999999999999988887644
No 178
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=90.97 E-value=1.2 Score=48.11 Aligned_cols=102 Identities=7% Similarity=0.044 Sum_probs=61.7
Q ss_pred hhcCCcEEEe-cCCcHHHhh----hcCCCCC---cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCcc-ceee
Q 044527 677 LASMDNIGSQ-LGSVVPGAL----SNLNFKD---SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAH-YTTA 747 (860)
Q Consensus 677 ~~~~~~i~~~-~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~-l~~~ 747 (860)
++++++|++. .++....++ +..++.. -+++.+ ...++..+|.+|++|+++...++......+.... +...
T Consensus 152 dLkGk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~~~~ 230 (417)
T 2g29_A 152 KVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTT 230 (417)
T ss_dssp TSSSCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEEEEG
T ss_pred hcCCCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEEEec
Confidence 5589999997 466554333 3334432 234444 4567899999999999998887766655544212 2222
Q ss_pred ccccccccCc-eEEEeccC----Cc-----chHHHHHHHHHHhh
Q 044527 748 AAKYTTSTNG-FGFVFQKG----SP-----LVHDISRAIARLRE 781 (860)
Q Consensus 748 ~~~~~~~~~~-~~~~~~k~----sp-----l~~~in~~i~~l~e 781 (860)
.+.. ...+ ..+++++. .| +.+.+.++..++.+
T Consensus 231 ~~~~--~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 231 GQLW--KDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp GGTB--TTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhc--CCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2322 2223 56777765 44 45556667777765
No 179
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=90.62 E-value=7.5 Score=37.51 Aligned_cols=84 Identities=13% Similarity=0.175 Sum_probs=58.9
Q ss_pred CCeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcC
Q 044527 454 INKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQ 533 (860)
Q Consensus 454 g~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g 533 (860)
.+.|+||+... . ...+...++..+.++.. ++++.+... +...++..|.+|
T Consensus 18 ~g~l~Ig~~~~--~-----------------~~~~l~~~l~~f~~~~P-~i~l~~~~~----------~~~~~~~~l~~g 67 (241)
T 3oxn_A 18 DQTFTIATTDY--A-----------------MQTILPFALPRIYQEAP-NVSFNFLPL----------QHDRLSDQLTYE 67 (241)
T ss_dssp CCEEEEEECSH--H-----------------HHHTHHHHHHHHHHHCT-TCEEEEEEC----------CGGGHHHHHHTS
T ss_pred CceEEEEechH--H-----------------HHHHHHHHHHHHHHHCC-CCEEEEEEC----------CcccHHHHHHcC
Confidence 36899998831 1 12345788999998875 356666654 667899999999
Q ss_pred cccEEEeceeecccccceeeccccccccceEEEEecCC
Q 044527 534 KFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQ 571 (860)
Q Consensus 534 ~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~ 571 (860)
++|+++.... .....+. +.++....+++++++..
T Consensus 68 ~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 68 GADLAICRPT---GPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CCSEEEECCS---SCCTTEE-EEEEECCCEEEEEETTS
T ss_pred CCCEEEecCC---CCCccce-eEEeecccEEEEEeCCC
Confidence 9999986432 2222222 57788889999998775
No 180
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=90.59 E-value=3.5 Score=39.01 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=49.3
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEE
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv 567 (860)
+-.+++..+.++.. ++++++... +...+.+.|.+|++|+++...... ...+ -+.++....+++++
T Consensus 18 ~l~~~l~~~~~~~P-~i~i~i~~~----------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~-~~~~l~~~~~~~v~ 82 (219)
T 3jv9_A 18 LLPKLIVSLRRTAP-KMPLMLEEN----------YTHTLTESLKRGDVDAIIVAEPFQ---EPGI-VTEPLYDEPFFVIV 82 (219)
T ss_dssp HHHHHHHHHHHHST-TCCEEEEEE----------CHHHHHHHHHHTSSSEEEEESSCC---CTTE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC----------CcHHHHHHHHcCCCCEEEEcCCCC---CCCe-eEEEeeeceEEEEE
Confidence 45788888888874 356666654 667899999999999998654222 2222 25778888888888
Q ss_pred ecCC
Q 044527 568 PIDQ 571 (860)
Q Consensus 568 ~~~~ 571 (860)
++..
T Consensus 83 ~~~~ 86 (219)
T 3jv9_A 83 PKGH 86 (219)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 8764
No 181
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=90.54 E-value=1 Score=46.36 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=33.8
Q ss_pred hcCCcEEE-ecCCcHHH----hhhcCCCCCcCc--cccCCHHHHHHHHhcCCcEEEEcc
Q 044527 678 ASMDNIGS-QLGSVVPG----ALSNLNFKDSRL--KKYNSAEEYANALSMGSISAIVDE 729 (860)
Q Consensus 678 ~~~~~i~~-~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~~i~~ 729 (860)
+.++++++ ..++.... +++..+.....+ ..+.+..+.+..+..|++|+.+..
T Consensus 129 L~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 129 LKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp GTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred hCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 36778877 34554332 334444433333 356778899999999999998865
No 182
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=89.40 E-value=0.66 Score=47.15 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=49.3
Q ss_pred ccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccch
Q 044527 616 RAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTI 672 (860)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~ 672 (860)
...++..++|+++.++...| ...|.+..+|++.+++.++++++.++..+.+.+.++-
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678899999999999877 4468899999999999999999999999988877754
No 183
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=88.89 E-value=6.8 Score=39.53 Aligned_cols=83 Identities=12% Similarity=0.075 Sum_probs=56.0
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++|+|++... . ...+...++..+.++.. ++++.+... +...+...|.+|+
T Consensus 95 g~l~i~~~~~--~-----------------~~~~l~~~l~~f~~~~P-~i~i~l~~~----------~~~~~~~~l~~g~ 144 (306)
T 3fzv_A 95 GQIDIGCFET--V-----------------APLYLPGLIAGFRQAYP-GVEIRIRDG----------EQQELVQGLTSGR 144 (306)
T ss_dssp EEEEEEEEGG--G-----------------HHHHHHHHHHHHHHHCT-TEEEEEEEE----------CHHHHHHHHHHTS
T ss_pred ceEEEEechh--h-----------------hHHHHHHHHHHHHHHCC-CeEEEEEeC----------CHHHHHHHHHCCC
Confidence 6899998831 1 13445788999999885 366776664 6788999999999
Q ss_pred ccEEEeceeecccccceeecccccc-ccceEEEEecCC
Q 044527 535 FDAAVGDTTITANRSVYVDFTLPYT-DMGIGMIVPIDQ 571 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~~~~~fs~p~~-~~~~~~lv~~~~ 571 (860)
+|+++..-. .....+ -..++. .....++++++.
T Consensus 145 ~Dl~i~~~~---~~~~~l-~~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 145 FDLAFLYEH---DLDSTI-ETEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp CSEEEECSS---SCCTTE-EEEESSCCBCCEEEEETTC
T ss_pred ccEEEEecc---cccccc-ceeeeeeccccEEEecCCC
Confidence 999985422 112222 245666 667777777654
No 184
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=88.44 E-value=3.1 Score=39.62 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=50.1
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+-.+++..+.++.. ++++++... +...+++.|.+|++|+++..... ....+. +.|+....++++
T Consensus 18 ~~l~~~l~~f~~~~P-~v~l~l~~~----------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v 82 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFP-KLEMYLHEA----------QTHQLLAQLDSGKLDAVILALVK---ESEAFI-EVPLFDEPMLLA 82 (219)
T ss_dssp HHHHHHHHHHHHHCT-TEEEEEEEC----------CHHHHHHHHHHTSCSEEEEECCG---GGTTSE-EEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHCC-CeEEEEEEC----------ChHHHHHHHHcCCeeEEEecCCC---CCCCcc-eeeeecccEEEE
Confidence 455788999999886 467777654 67899999999999999853221 112222 467888888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 83 ~~~~h 87 (219)
T 1i6a_A 83 IYEDH 87 (219)
T ss_dssp EETTS
T ss_pred EcCCC
Confidence 88764
No 185
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=88.42 E-value=3.2 Score=43.63 Aligned_cols=64 Identities=13% Similarity=-0.022 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceee-cc-cccc
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVD-FT-LPYT 559 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~-fs-~p~~ 559 (860)
-.+.+.+.++.|-++++++.+.+.- |++..+++.+..|.+|+++.+......+...+. |+ .||.
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g~L------g~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAGAV------VGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSS------SCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCcc------cCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 3577888888887778877765333 467899999999999999876655554443333 22 5554
No 186
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=88.40 E-value=0.86 Score=44.26 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=48.4
Q ss_pred cccchhHHHHHHHHhhccc-c-ccccccchhhhHHHHHHHHHHHHHHhhhccccccc
Q 044527 617 AHQFGMIFWYSFSTLVFSQ-R-EKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLT 671 (860)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~-~-~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt 671 (860)
..++.+++|+++.++...| + ..|.+..+|++.+++.++++.+.+...+.+++.++
T Consensus 163 ~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 163 IKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQ 219 (223)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999877 4 46889999999999999999999999999987764
No 187
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=86.22 E-value=7.7 Score=39.21 Aligned_cols=72 Identities=8% Similarity=-0.034 Sum_probs=49.3
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+...++..+.++.. .+++.+... ..+.++..|.+|++|+++........ ...+ -+.++....++++
T Consensus 105 ~~l~~~l~~f~~~~P-~i~i~l~~~----------~~~~~~~~l~~g~~Dlai~~~~~~~~-~~~l-~~~~L~~~~~~~v 171 (305)
T 3fxq_A 105 AALPLALASFAREFP-DVTVNVRDG----------MYPAVSPQLRDGTLDFALTAAHKHDI-DTDL-EAQPLYVSDVVIV 171 (305)
T ss_dssp THHHHHHHHHHHHCT-TCEEEEEEC----------CTTTTHHHHHHTSSSEEEEECCGGGS-CTTE-EEEEEEECCEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEEC----------CHHHHHHHHHcCCCCEEEecCCCCCC-ccCe-eEEEeecCcEEEE
Confidence 345788899988885 356666653 45678999999999999854322110 1112 2577888888999
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 172 ~~~~h 176 (305)
T 3fxq_A 172 GQRQH 176 (305)
T ss_dssp EETTC
T ss_pred EcCCC
Confidence 88764
No 188
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=86.20 E-value=4.6 Score=42.17 Aligned_cols=90 Identities=12% Similarity=-0.010 Sum_probs=68.7
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQ 122 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~~ 122 (860)
=+||.+.....+.-.....|+..+++++|-+ .++.+....+-.||..+.+.+..++++ ++++|+.... ..
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~np~-----i~v~~~~~g~~~d~~kg~~~a~~l~~~-G~DvIf~~~d-~~--- 219 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVNPD-----FRVKVIWVNSWFDPGKEADAAKALIDQ-GVDIITQHTD-ST--- 219 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTCTT-----CEEEEEECSSSCCHHHHHHHHHHHHHT-TCSEEEESSS-SS---
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHCCC-----CEEEEEECCCCCChHHHHHHHHHHHhC-CCcEEEECCC-ch---
Confidence 4689998876655455688999999988744 577766666668999999999999987 8999998777 43
Q ss_pred HHHHhhcCCCCcEEecccCC
Q 044527 123 ILADLGSRAKIPIISLFTTL 142 (860)
Q Consensus 123 ~~~~~~~~~~ip~Is~~a~~ 142 (860)
.+...+.+.++..|.+....
T Consensus 220 Gv~~aa~e~Gv~vIG~D~dq 239 (356)
T 3s99_A 220 AAIQVAHDRGIKAFGQASDM 239 (356)
T ss_dssp HHHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHHcCCEEEEEcCch
Confidence 34556677889899887543
No 189
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=86.15 E-value=7.1 Score=40.06 Aligned_cols=122 Identities=11% Similarity=0.083 Sum_probs=76.4
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHHHH
Q 044527 44 HVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQI 123 (860)
Q Consensus 44 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~~~ 123 (860)
+||.+.....+.......|++.++++.|-+ .++......+-.++..+.+.+.+++++ ++.+|+.... ..+..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~d--~~a~G 202 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPD-----IQVVVEVANTFSDPQKGQALAAKLYDS-GVNVIFQVAG--GTGNG 202 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTT-----CEEEEEECSCSSCHHHHHHHHHHHHHT-TCCEEEEECG--GGHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCC-----CEEEEEEccCccCHHHHHHHHHHHHHC-CCcEEEECCC--CCchH
Confidence 688887665444566788999999998633 454444434445788888999999986 7899987655 33444
Q ss_pred HHHhhcC-----CCCcEEecccCCCccc------cc-ceEeecCCCchhHHHHHHHHHHHhhCCCc
Q 044527 124 LADLGSR-----AKIPIISLFTTLPNSL------TS-YSIQIDQDDEASQSQARGISDFISVFKWK 177 (860)
Q Consensus 124 ~~~~~~~-----~~ip~Is~~a~~~~~l------s~-~~~r~~p~~~~~~~~~~ai~~~l~~~~w~ 177 (860)
+...+.+ .++.+|++..... .. .+ .+.-+..+-. ..+...++.+..-.|+
T Consensus 203 v~~a~~e~g~~P~dv~viG~D~~~~-~~~~~~~~~~~~LTsv~~~~~---~~~~~a~~~~~~g~~~ 264 (318)
T 2fqx_A 203 VIKEARDRRLNGQDVWVIGVDRDQY-MDGVYDGSKSVVLTSMVKRAD---VAAERISKMAYDGSFP 264 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEEESCCG-GGGBCSSSCBSEEEEEEECHH---HHHHHHHHHHHHTCCC
T ss_pred HHHHHHhhhhccCCcEEEEEecchh-hhccccCCCCeEEEEEEEEHH---HHHHHHHHHHHcCCCC
Confidence 4444444 6788898875332 22 22 3333344444 5566666666554443
No 190
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=85.18 E-value=24 Score=33.07 Aligned_cols=158 Identities=20% Similarity=0.165 Sum_probs=99.4
Q ss_pred eEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHH
Q 044527 42 EVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGA 121 (860)
Q Consensus 42 ~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~ 121 (860)
..+|.++.|..+ ...-++-...+.|. .+. +.+ ++-..++..+.++ . +++.+||.-.. ++
T Consensus 4 ~~~I~~iapy~~-----l~~~~~~i~~e~~~-------~i~--i~~--~~l~~~v~~a~~~-~-~~~dVIISRGg---ta 62 (196)
T 2q5c_A 4 SLKIALISQNEN-----LLNLFPKLALEKNF-------IPI--TKT--ASLTRASKIAFGL-Q-DEVDAIISRGA---TS 62 (196)
T ss_dssp CCEEEEEESCHH-----HHHHHHHHHHHHTC-------EEE--EEE--CCHHHHHHHHHHH-T-TTCSEEEEEHH---HH
T ss_pred CCcEEEEEccHH-----HHHHHHHHHhhhCC-------ceE--EEE--CCHHHHHHHHHHh-c-CCCeEEEECCh---HH
Confidence 357888888753 33334444444332 333 333 4567799999998 5 58999997433 44
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSL 201 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~ 201 (860)
..+. +..++|+|....+.. ...+++...-++. +++|++...... ...+.+.+.+
T Consensus 63 ~~lr---~~~~iPVV~I~~s~~------------------Dil~al~~a~~~~--~kIavvg~~~~~---~~~~~~~~ll 116 (196)
T 2q5c_A 63 DYIK---KSVSIPSISIKVTRF------------------DTMRAVYNAKRFG--NELALIAYKHSI---VDKHEIEAML 116 (196)
T ss_dssp HHHH---TTCSSCEEEECCCHH------------------HHHHHHHHHGGGC--SEEEEEEESSCS---SCHHHHHHHH
T ss_pred HHHH---HhCCCCEEEEcCCHh------------------HHHHHHHHHHhhC--CcEEEEeCcchh---hHHHHHHHHh
Confidence 4433 446799998753332 6677777765543 499999865532 2334444443
Q ss_pred hhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 202 HDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 202 ~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
|.++..... .+..+....++++++.+.++||-.+. ..+.|.++|+
T Consensus 117 ---~~~i~~~~~-----~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl 161 (196)
T 2q5c_A 117 ---GVKIKEFLF-----SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGL 161 (196)
T ss_dssp ---TCEEEEEEE-----CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTC
T ss_pred ---CCceEEEEe-----CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCC
Confidence 556655332 35667888999999999999876433 2556788886
No 191
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=85.04 E-value=27 Score=33.23 Aligned_cols=70 Identities=10% Similarity=0.198 Sum_probs=49.3
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+-..++..+.++.. ++++++... +...+...|.+|++|+++..... ....+. +.++....++++
T Consensus 43 ~~l~~~l~~f~~~~P-~v~l~~~~~----------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v 107 (238)
T 2hxr_A 43 YFIGPLMADFYARYP-SITLQLQEM----------SQEKIEDMLCRDELDVGIAFAPV---HSPELE-AIPLLTESLALV 107 (238)
T ss_dssp TTHHHHHHHHHHHCT-TSCEEEEEC----------CHHHHHHHHHTTSCSEEEEESSC---CCTTEE-EEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCC-CcEEEEEEC----------CHHHHHHHHHcCCCcEEEEcCCC---Ccccce-eeeeccCcEEEE
Confidence 345788899998885 466776654 66789999999999999853221 112222 467888888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 108 ~~~~h 112 (238)
T 2hxr_A 108 VAQHH 112 (238)
T ss_dssp EETTS
T ss_pred EcCCC
Confidence 88664
No 192
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=84.33 E-value=1.2 Score=46.84 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=56.0
Q ss_pred HHHHHhhhhccccCCCcCCcccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccch
Q 044527 596 LTGFVVWIIERPVNDEFQGSRAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTI 672 (860)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~ 672 (860)
+.+.+++.+++..++ ....++..++|+++.++...| ...|.+..+|++.+++.++++++.++..+.+.+.+..
T Consensus 142 ~~a~~~~~~e~~~~~----~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 142 AVALAAYVIERDIQP----EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHTTTCH----HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCC----cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555553322 123468899999999999877 4468899999999999999999999999999887753
No 193
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=84.12 E-value=12 Score=37.82 Aligned_cols=73 Identities=7% Similarity=0.002 Sum_probs=47.6
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+...++..+.++.. ++++.+... +...++..|.+|++|+++......+.....+ -+.++....++++
T Consensus 114 ~~l~~~l~~f~~~~P-~i~i~l~~~----------~~~~~~~~l~~g~~Dl~i~~~~~~~~~~~~l-~~~~l~~~~~~~v 181 (310)
T 2esn_A 114 ALLPPLMNRLQHSAP-GVRLRLVNA----------ERKLSVEALASGRIDFALGYDEEHERLPEGI-QAHDWFADRYVVV 181 (310)
T ss_dssp HHHHHHHHHHHHHST-TCEEEEECC----------SSSCCHHHHHHTSSSEEEECCSTTCCCCTTE-EEEEEEEECEEEE
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEeC----------CcccHHHHHHcCCCCEEEecCcccccCCcCc-ceeeeeccceEEE
Confidence 345788888988885 466666654 3456788899999999986410011111112 2467888888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 182 ~~~~~ 186 (310)
T 2esn_A 182 ARRDH 186 (310)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 88664
No 194
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=83.91 E-value=1.4 Score=46.68 Aligned_cols=91 Identities=11% Similarity=0.096 Sum_probs=67.5
Q ss_pred HHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe
Q 044527 164 ARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 164 ~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~ 243 (860)
.+.+.++++.+|.+++.+|++..-... +..+.+.+.+++.|+++.....+. +++........++.+++.++|+||..+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~-g~~~~v~~~L~~~gi~~~~~~~v~-~~p~~~~v~~~~~~~~~~~~D~IIavG 96 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKS-GVVKQVADLLKAQGINSAVYDGVM-PNPTVTAVLEGLKILKDNNSDFVISLG 96 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHT-THHHHHHHHHHTTTCEEEEEEEEC-SSCBHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhC-chHHHHHHHHHHcCCeEEEECCcc-CCCCHHHHHHHHHHHHhcCcCEEEEeC
Confidence 455777888899999999998754433 468899999999999875544444 566778888889999999999999988
Q ss_pred CH--HHHHHHHHHHH
Q 044527 244 TH--ALASHLFLNAK 256 (860)
Q Consensus 244 ~~--~~~~~il~~a~ 256 (860)
.+ -|+..++....
T Consensus 97 GGsv~D~aK~ia~~~ 111 (383)
T 3ox4_A 97 GGSPHDCAKAIALVA 111 (383)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 64 33444444433
No 195
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=83.31 E-value=0.49 Score=49.42 Aligned_cols=112 Identities=7% Similarity=0.027 Sum_probs=66.9
Q ss_pred cchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccchhhHhh-------hcCCcEEEec-C
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQIKL-------ASMDNIGSQL-G 688 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~~-------~~~~~i~~~~-~ 688 (860)
++.+++|+++.++...| ...|.+..+|++.++|.++++++.++..+.+++.++...... ....++-+.. |
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viI~G~G 124 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVAKSRHVVICGWS 124 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-----------------CEEEEESCC
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCEEEECCc
Confidence 57889999999999877 346889999999999999999999999999999887655431 1112343332 2
Q ss_pred CcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHH
Q 044527 689 SVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPY 732 (860)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~ 732 (860)
..-....+....... +...+..++..+ +.+....++..|...
T Consensus 125 ~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~ 166 (336)
T 1lnq_A 125 ESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTR 166 (336)
T ss_dssp HHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTS
T ss_pred HHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCC
Confidence 222222222211122 555555555555 544444555555433
No 196
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=82.78 E-value=19 Score=34.06 Aligned_cols=70 Identities=10% Similarity=-0.016 Sum_probs=50.2
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+-..++..+.++.. ++++.+... +...++++|.+|++|+++... +.....+. +.|+....++++
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~~----------~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~-~~~l~~~~~~~v 85 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLRP----------NAGNLKEDMESGAVDLALGLL---PELQTGFF-QRRLFRHRYVCM 85 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEECC----------CTTTHHHHHHHTSSCEEEECC---TTCCTTEE-EEEEEEECEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEeC----------CcccHHHHHhCCCceEEEecC---CCCCccee-EEEeeeccEEEE
Confidence 455788999998885 466776653 567899999999999998532 11122233 368888999999
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
++++.
T Consensus 86 ~~~~h 90 (218)
T 2y7p_A 86 FRKDH 90 (218)
T ss_dssp EETTC
T ss_pred EcCCC
Confidence 98765
No 197
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=82.61 E-value=3.2 Score=43.19 Aligned_cols=60 Identities=8% Similarity=-0.055 Sum_probs=38.2
Q ss_pred HhhhcCCcEEEecCCcHHH----hhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHH
Q 044527 675 IKLASMDNIGSQLGSVVPG----ALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRA 735 (860)
Q Consensus 675 ~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~ 735 (860)
.++++|++|++.. +.... ++++.+.....+..++...+...++.+|++|+.+.-.+....
T Consensus 106 ~~dLkGK~ig~~~-~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 106 FQSLKGKRIGYVG-EFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQV 169 (342)
T ss_dssp GGGGTTCEEEESS-SHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHH
T ss_pred HHHhCCCEEEecC-CchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHH
Confidence 3455999999854 33332 334445555555555544556788999999999876655443
No 198
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=82.50 E-value=6.7 Score=41.19 Aligned_cols=52 Identities=6% Similarity=-0.195 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccc
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITAN 547 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~ 547 (860)
-.+.+.+.++.|-++++++.+.+.- |+...+++.+..|.+|++..+......
T Consensus 52 ~~fa~~v~e~s~G~v~i~~~~~g~L------g~~~~~~eav~~G~iD~~~~~~~~~~~ 103 (365)
T 2hzl_A 52 EVLSKMLSEATDGNFQIQVFSAGEL------VPGLQAADAVTEGTVECCHTVGYYYWG 103 (365)
T ss_dssp HHHHHHHHHHTTTSSEEEEECTTTS------SCGGGHHHHHHTTSSSEEEECGGGGTT
T ss_pred HHHHHHHHHhcCCeEEEEEecCCcc------cCHHHHHHHHHcCccceeecchhhhcc
Confidence 3477888888887788888775332 467889999999999998765443333
No 199
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=82.34 E-value=2.7 Score=43.01 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=48.4
Q ss_pred cchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccchh
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQ 673 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~ 673 (860)
++..++|+++.++...| ...|.+..+|++.+++.++++++.++-++.+++.++-+
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~ 134 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999877 44688999999999999999999999999988877543
No 200
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=82.26 E-value=8.6 Score=36.62 Aligned_cols=72 Identities=6% Similarity=-0.080 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc-ccEEEeceeeccc---ccceee--cccccccc
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK-FDAAVGDTTITAN---RSVYVD--FTLPYTDM 561 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~-~Di~~~~~~~t~~---r~~~~~--fs~p~~~~ 561 (860)
+..+++..+.++-|.++++ ... +...++..|.+|+ +|+++..-....+ ....+. -..|+...
T Consensus 13 ~l~~~~~~F~~~p~i~v~~--~~~----------~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVI--SSG----------SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIG 80 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEE--EEE----------CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEEC
T ss_pred HHHHHHHHHHhccCCeEEE--EEC----------CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeee
Confidence 3456788888877765544 332 4578899999998 9998753211111 111111 24678888
Q ss_pred ceEEEEecCC
Q 044527 562 GIGMIVPIDQ 571 (860)
Q Consensus 562 ~~~~lv~~~~ 571 (860)
.+++++++..
T Consensus 81 ~~vlv~~~~~ 90 (231)
T 1atg_A 81 KLVLWSAKPG 90 (231)
T ss_dssp CEEEEESSTT
T ss_pred eEEEEEcCCC
Confidence 8888888765
No 201
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=80.64 E-value=5.4 Score=42.31 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=62.4
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCc-CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGND-NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~-~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
.+.++++.++.+++.+|++...+... +..+.+.+.+++.|+++.....+. +++........++.+++.++|+||..+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVE-PNPKDTNVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCC-SSCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCcc-CCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45667777888999998865533220 178999999999998875433344 4566778888899999999999998876
Q ss_pred H--HHHHHHHHHH
Q 044527 245 H--ALASHLFLNA 255 (860)
Q Consensus 245 ~--~~~~~il~~a 255 (860)
+ -|+..++...
T Consensus 102 Gsv~D~aK~iA~~ 114 (387)
T 3bfj_A 102 GSPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 3 4444444443
No 202
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=80.38 E-value=40 Score=31.83 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=49.7
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+-.+++..+.++.. ++++++... +.+.+.+.|.+|++|+++..... .....+. +.++....++++
T Consensus 27 ~~l~~~l~~f~~~~P-~v~l~l~~~----------~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v 92 (228)
T 2fyi_A 27 YSLPEVIKAFRELFP-EVRLELIQG----------TPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHSLL 92 (228)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEEC----------CHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeC----------CHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceEEE
Confidence 345788999999886 467777654 67899999999999999853211 1111222 367788888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 93 ~~~~h 97 (228)
T 2fyi_A 93 VPHDH 97 (228)
T ss_dssp EETTC
T ss_pred ecCCC
Confidence 88664
No 203
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=80.37 E-value=19 Score=36.40 Aligned_cols=52 Identities=4% Similarity=-0.181 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccc
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITAN 547 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~ 547 (860)
-.+.+.+.++.|-++++++.+.+.- |+-..+++.+..|.+|++..+......
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~L------g~~~~~~e~v~~G~id~~~~~~~~~~~ 72 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTL------LKRPEVKRGVQQGVVQIGEVLVSALGN 72 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSS------SCGGGHHHHHHHTSSSEEEEEGGGGTT
T ss_pred HHHHHHHHHHcCCeEEEEEccchhh------CChHHHHHHHHCCCeeeehhhhhhhhc
Confidence 3677888888888888887765433 356789999999999998765443333
No 204
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=79.17 E-value=5.7 Score=38.46 Aligned_cols=81 Identities=20% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCC
Q 044527 97 TTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKW 176 (860)
Q Consensus 97 ~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w 176 (860)
+.+..+.. .++.+|+-+.+ +.. ..+..+-+..++|++... ++.++.+...+-
T Consensus 65 ~~~~~l~~-~g~d~iviaCn-Ta~-~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~~ 116 (228)
T 1jfl_A 65 WTAKRLEE-CGADFIIMPCN-TAH-AFVEDIRKAIKIPIISMI-------------------------EETAKKVKELGF 116 (228)
T ss_dssp HHHHHHHH-HTCSEEECSCT-GGG-GGHHHHHHHCSSCBCCHH-------------------------HHHHHHHHHTTC
T ss_pred HHHHHHHH-cCCCEEEEcCc-cHH-HHHHHHHHhCCCCEechH-------------------------HHHHHHHHHcCC
Confidence 44444544 48999887766 443 445555566678877642 112222222266
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhCCceEe
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIA 209 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~ 209 (860)
++|+++...... ....+++.+++.|.++.
T Consensus 117 ~rigvlaT~~T~----~~~~y~~~l~~~g~~v~ 145 (228)
T 1jfl_A 117 KKAGLLATTGTI----VSGVYEKEFSKYGVEIM 145 (228)
T ss_dssp SEEEEECCHHHH----HHTHHHHHHHHTTCEEE
T ss_pred CeEEEEecHHHh----hhhHHHHHHHHCCCeEE
Confidence 899999755321 11345677777787753
No 205
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=78.75 E-value=13 Score=37.80 Aligned_cols=52 Identities=10% Similarity=-0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccc
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITAN 547 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~ 547 (860)
-.+.+.+.++.|-++++++.+.+.- |+-..+++.+..|.+|++..+......
T Consensus 20 ~~fa~~v~~~s~G~i~i~~~~~g~L------g~~~~~~~~v~~G~id~~~~~~~~~~~ 71 (301)
T 2pfz_A 20 TQFVKDVDSLSGGKLKITLHNNASL------YKAPEIKRAVQGNQAQIGEILLTNFAN 71 (301)
T ss_dssp HHHHHHHHHHHTTSCEEEEECTTSS------SCGGGHHHHHHTTSSSEEEEEGGGGTT
T ss_pred HHHHHHHHHHcCCeEEEEEccCccc------CChHHHHHHHHCCceeeEechhhhccc
Confidence 3567788888887788887775433 356789999999999998765443333
No 206
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=78.61 E-value=43 Score=32.24 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc-ccEEEeceeecccc---cceee--ccccccccce
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK-FDAAVGDTTITANR---SVYVD--FTLPYTDMGI 563 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~-~Di~~~~~~~t~~r---~~~~~--fs~p~~~~~~ 563 (860)
-++++.+.++.|.++++.+- +-..++..+.+|. +|+.++.-.-..++ ...+. ...++....+
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~~------------~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~l 89 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSFA------------SSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSL 89 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEEE------------CHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECE
T ss_pred HHHHHHHHhccCCeEEEEEC------------CHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceE
Confidence 46888888888875555433 4467888888887 99988642111111 12222 2357888889
Q ss_pred EEEEecCC
Q 044527 564 GMIVPIDQ 571 (860)
Q Consensus 564 ~~lv~~~~ 571 (860)
+++++++.
T Consensus 90 vl~~~~~~ 97 (237)
T 3r26_A 90 VVVAPKAS 97 (237)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99998875
No 207
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=78.46 E-value=40 Score=32.02 Aligned_cols=68 Identities=6% Similarity=-0.034 Sum_probs=49.9
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+...++..+.++.. ++++.+... +...+...|.+|++|+++..... . . --+.++....++++
T Consensus 40 ~~l~~~l~~f~~~~P-~i~l~i~~~----------~~~~~~~~L~~g~~Dl~i~~~~~--~---~-~~~~~l~~~~~~~v 102 (238)
T 3onm_A 40 TLLPFLLNRVATLYP-RLAIDVRVK----------RSPFIADMLSSGEVDLAITTAKV--D---S-HPHVILRTSPTLWY 102 (238)
T ss_dssp THHHHHHHHHHHHCT-TCCEEEEEC----------CHHHHHHHHHHTSCSEEEECSCC------C-CCEEEEEEECEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEEC----------CHHHHHHHHHCCCccEEEEecCC--C---C-cceEEeecCCEEEE
Confidence 345788999988875 356666654 67899999999999999864321 1 1 23578888889999
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 103 ~~~~~ 107 (238)
T 3onm_A 103 CSVDY 107 (238)
T ss_dssp EETTC
T ss_pred EcCCC
Confidence 88765
No 208
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=77.14 E-value=12 Score=40.16 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=60.5
Q ss_pred Hhhh-c--CC--cEEEe-cCCcHHHh----hhcCCCCCc---CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccC
Q 044527 675 IKLA-S--MD--NIGSQ-LGSVVPGA----LSNLNFKDS---RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYS 741 (860)
Q Consensus 675 ~~~~-~--~~--~i~~~-~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~ 741 (860)
++++ + |+ +|++. .++....+ ++..++... +++.+ ...++..+|.+|++|+++...++......+..
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g~ 231 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTENI 231 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTTS
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCCC
Confidence 3556 6 88 99997 56654333 344455432 33334 56788999999999999988877665555432
Q ss_pred cc-ceeeccccccccCceEEEeccC----Cc-----chHHHHHHHHHHhh
Q 044527 742 AH-YTTAAAKYTTSTNGFGFVFQKG----SP-----LVHDISRAIARLRE 781 (860)
Q Consensus 742 ~~-l~~~~~~~~~~~~~~~~~~~k~----sp-----l~~~in~~i~~l~e 781 (860)
.. +....+... ......+++++. .| +.+.+.++..++.+
T Consensus 232 g~~~~~~~~~~~-~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 232 GYMAGLTAQIWP-YHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp CEEEEEHHHHST-TCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred CEEEEechHhcC-CCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 11 222222220 122356777765 34 44555555566654
No 209
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=77.14 E-value=29 Score=34.38 Aligned_cols=83 Identities=5% Similarity=-0.038 Sum_probs=57.2
Q ss_pred CeEEEEecCCCcccceEeeeCCCCCCCCccEeeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc
Q 044527 455 NKLRIGVPVNGLKEFVNVVWDPQSINSTLTVEGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK 534 (860)
Q Consensus 455 ~~l~v~~~~~~~~pf~~~~~~~~~~~~~~~~~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~ 534 (860)
++||||+... .. ..+...++..+.++.. ++++.+... +...++..|.+|+
T Consensus 91 g~l~Ig~~~~--~~-----------------~~~l~~~l~~f~~~~P-~i~l~~~~~----------~~~~~~~~l~~g~ 140 (294)
T 1ixc_A 91 GELSVAYFGT--PI-----------------YRSLPLLLRAFLTSTP-TATVSLTHM----------TKDEQVEGLLAGT 140 (294)
T ss_dssp EEEEEEECSG--GG-----------------GTHHHHHHHHHHHHCT-TEEEEEEEC----------CHHHHHHHHHHTS
T ss_pred ceEEEEEccc--hh-----------------HHHHHHHHHHHHHHCC-CcEEEEEeC----------CHHHHHHHHHCCC
Confidence 6799998832 11 2344788899998875 466776654 5678999999999
Q ss_pred ccEEEeceeecccccceeeccccccccceEEEEecCC
Q 044527 535 FDAAVGDTTITANRSVYVDFTLPYTDMGIGMIVPIDQ 571 (860)
Q Consensus 535 ~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv~~~~ 571 (860)
+|+++...... ...+ -+.|+....+++++++..
T Consensus 141 ~Dl~i~~~~~~---~~~l-~~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 141 IHVGFSRFFPR---HPGI-EIVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CSEEEESCCCC---CTTE-EEEEEEEEEEEEEEEGGG
T ss_pred ccEEEEecCCC---CCCc-eEEEEeeccEEEEEeCCC
Confidence 99998643221 1222 246788888888887664
No 210
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=76.99 E-value=16 Score=36.80 Aligned_cols=119 Identities=11% Similarity=-0.052 Sum_probs=73.9
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQ 122 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~~ 122 (860)
=+||.+.....+. ...|++.|+++.|- . +..+....+-.++..+.+.+.+++++ ++.+|+.... ..+.
T Consensus 127 ~~Ig~i~g~~~~~---r~~Gf~~~~~~~~~-----~-~~~~~~~~~~~~~~~g~~~a~~ll~~-~~daI~~~~D--~~a~ 194 (296)
T 2hqb_A 127 HKVGVIAAFPWQP---EVEGFVDGAKYMNE-----S-EAFVRYVGEWTDADKALELFQELQKE-QVDVFYPAGD--GYHV 194 (296)
T ss_dssp SEEEEEESCTTCH---HHHHHHHHHHHTTC-----C-EEEEEECSSSSCHHHHHHHHHHHHTT-TCCEEECCCT--TTHH
T ss_pred CeEEEEcCcCchh---hHHHHHHHHHHhCC-----C-eEEEEeeccccCHHHHHHHHHHHHHC-CCcEEEECCC--CCCH
Confidence 3688887654432 67899999998762 2 33333333335778888889999986 7999997655 4455
Q ss_pred HHHHhhcCCCCcEEecccCCCcccc-c-ceEeecCCCchhHHHHHHHHHHHhhCCCc
Q 044527 123 ILADLGSRAKIPIISLFTTLPNSLT-S-YSIQIDQDDEASQSQARGISDFISVFKWK 177 (860)
Q Consensus 123 ~~~~~~~~~~ip~Is~~a~~~~~ls-~-~~~r~~p~~~~~~~~~~ai~~~l~~~~w~ 177 (860)
.+...+.+.++.+|++..... .+. + .+..+..+-. ..+...++.+..-.|+
T Consensus 195 Gv~~a~~e~Gv~viG~D~~~~-~~~~~~~LTsv~~~~~---~~~~~a~~~~~~g~~~ 247 (296)
T 2hqb_A 195 PVVEAIKDQGDFAIGYVGDQA-DLGGSTILTSTVQHVD---DLYVLVAKRFQEGKLE 247 (296)
T ss_dssp HHHHHHHHHTCEEEEEESCCS-SSSCSSEEEEEEECHH---HHHHHHHHHTTTTCCC
T ss_pred HHHHHHHHcCCEEEEEecchh-hhCCCeEEEEEEEEhH---HHHHHHHHHHHcCCCC
Confidence 555667777888898875222 221 2 2333333434 5555555555555565
No 211
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=76.58 E-value=7.5 Score=40.87 Aligned_cols=88 Identities=8% Similarity=0.107 Sum_probs=62.7
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
+.+.++++.++ +++.+|++...+...+..+.+.+.+++.|+++.....+. +++.........+.+++.++|+||..+.
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVE-ENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEEC-SSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCcc-CCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 44566677778 999999976444331357889999999998865444444 5567788888999999999999998876
Q ss_pred H--HHHHHHHHH
Q 044527 245 H--ALASHLFLN 254 (860)
Q Consensus 245 ~--~~~~~il~~ 254 (860)
+ -|+..++..
T Consensus 108 Gsv~D~AK~iA~ 119 (371)
T 1o2d_A 108 GSPMDFAKAVAV 119 (371)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4 344444433
No 212
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=76.41 E-value=31 Score=34.99 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=48.4
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+...++..+.++.. .+++.+... +.+.++..+.+|++|+++...... ....+. +.++....++++
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~~----------~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v 171 (324)
T 1al3_A 106 YALPGVIKGFIERYP-RVSLHMHQG----------SPTQIAEAVSKGNADFAIATEALH--LYDDLV-MLPCYHWNRSIV 171 (324)
T ss_dssp HTSHHHHHHHHHHCT-EEEEEEEEC----------CHHHHHHHHHTTCCSEEEESSCCC--TTSCEE-EEEEEEECEEEE
T ss_pred hHHHHHHHHHHHHCC-CCEEEEEEC----------CHHHHHHHHHCCCceEEEEecCCC--CCCCee-EEEecCCceEEE
Confidence 344788899998886 466666653 667899999999999998542211 111222 467777788888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 172 ~~~~~ 176 (324)
T 1al3_A 172 VTPEH 176 (324)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 87654
No 213
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=75.56 E-value=11 Score=36.28 Aligned_cols=161 Identities=17% Similarity=0.105 Sum_probs=98.8
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQ 122 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~~ 122 (860)
.+|.++.|.++ ...-++-++.+.|. ..++.+.| ++-..++..+.+++..+++.+||.-.. ++.
T Consensus 13 ~~ii~i~~~~~-----L~~~~~~i~~e~~~-------~~~I~vi~--~~le~av~~a~~~~~~~~~dVIISRGg---ta~ 75 (225)
T 2pju_A 13 KPVIWTVSVTR-----LFELFRDISLEFDH-------LANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAGS---NGA 75 (225)
T ss_dssp CCEEEEECCHH-----HHHHHHHHHTTTTT-------TCEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEHH---HHH
T ss_pred CCEEEEEchHH-----HHHHHHHHHHhhCC-------CceEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCCh---HHH
Confidence 46788888653 22323333332222 23344444 456778888888877657999997433 444
Q ss_pred HHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHh
Q 044527 123 ILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLH 202 (860)
Q Consensus 123 ~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~ 202 (860)
.+. +..++|+|....+.. ...+++...-+ ++ ++++++..... ...+....+
T Consensus 76 ~Lr---~~~~iPVV~I~vs~~------------------Dil~aL~~a~~-~~-~kIavVg~~~~------~~~~~~i~~ 126 (225)
T 2pju_A 76 YLK---SRLSVPVILIKPSGY------------------DVLQFLAKAGK-LT-SSIGVVTYQET------IPALVAFQK 126 (225)
T ss_dssp HHH---TTCSSCEEEECCCHH------------------HHHHHHHHTTC-TT-SCEEEEEESSC------CHHHHHHHH
T ss_pred HHH---hhCCCCEEEecCCHH------------------HHHHHHHHHHh-hC-CcEEEEeCchh------hhHHHHHHH
Confidence 433 446799998753332 55666666544 44 59999975442 233443334
Q ss_pred hCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 203 DNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 203 ~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
-.|.++..... .+..+....++++++.+.++||-.+. ..+.|.++||
T Consensus 127 ll~~~i~~~~~-----~~~ee~~~~i~~l~~~G~~vVVG~~~------~~~~A~~~Gl 173 (225)
T 2pju_A 127 TFNLRLDQRSY-----ITEEDARGQINELKANGTEAVVGAGL------ITDLAEEAGM 173 (225)
T ss_dssp HHTCCEEEEEE-----SSHHHHHHHHHHHHHTTCCEEEESHH------HHHHHHHTTS
T ss_pred HhCCceEEEEe-----CCHHHHHHHHHHHHHCCCCEEECCHH------HHHHHHHcCC
Confidence 44666655332 35778999999999999999865432 2556788886
No 214
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=75.53 E-value=6.9 Score=37.70 Aligned_cols=74 Identities=4% Similarity=-0.005 Sum_probs=49.8
Q ss_pred HHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCC-------CChHHHHHHHHhhhcC--CCeEEE
Q 044527 170 FISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLAS-------STHDQIIEKLSMLKSL--DTKVFV 240 (860)
Q Consensus 170 ~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~-------~~~~~~~~~l~~i~~~--~~~vii 240 (860)
.++..|-+||+++.. |+. ...+.+++.+++.|+++....... .. .+...+...++++.+. ++|+||
T Consensus 102 a~~~~g~~rvgvlt~---~~~-~~~~~~~~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIv 176 (223)
T 2dgd_A 102 LLKKLNVRKLWIGTP---YIK-ERTLEEVEWWRNKGFEIVGYDGLG-KIRGIDISNTPIFTIYRLVKRHLNEVLKADAVY 176 (223)
T ss_dssp HHHHTTCCEEEEEES---SCH-HHHHHHHHHHHTTTCEEEEEEECC-CCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEE
T ss_pred HHHHcCCCeEEEEeC---Cch-HHHHHHHHHHHhCCcEEecccCCC-CCCcchhhccCHHHHHHHHHHHhcccCCCCEEE
Confidence 345567789999963 555 556678889999999876544332 11 1234566677777666 899999
Q ss_pred EEeCHHHH
Q 044527 241 VHMTHALA 248 (860)
Q Consensus 241 l~~~~~~~ 248 (860)
+.|..-..
T Consensus 177 LgCT~l~~ 184 (223)
T 2dgd_A 177 IACTALST 184 (223)
T ss_dssp ECCTTSCC
T ss_pred EeCCcccH
Confidence 98865443
No 215
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=74.96 E-value=5.5 Score=42.56 Aligned_cols=89 Identities=10% Similarity=0.116 Sum_probs=61.5
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
..+.++++.++.+++.+|+++.........+.+.+.+++.|+++....... +++........++.+++.++|+||..+.
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVK-PNPVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCC-SSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCcc-CCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 345667777888999999864432220357889999999998875433333 4556678888889999999999998876
Q ss_pred H--HHHHHHHHH
Q 044527 245 H--ALASHLFLN 254 (860)
Q Consensus 245 ~--~~~~~il~~ 254 (860)
+ -|+..++..
T Consensus 111 GsviD~AK~iA~ 122 (407)
T 1vlj_A 111 GSVVDSAKAVAA 122 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 4 344444433
No 216
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=74.95 E-value=2.9 Score=44.44 Aligned_cols=89 Identities=7% Similarity=0.091 Sum_probs=63.6
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC-
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT- 244 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~- 244 (860)
.+.++++.++.+++.+|++...... +..+.+.+.+++.|+++.....+. +++.........+.+++.++|+||..+.
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~-g~~~~v~~~L~~~g~~~~~~~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQC-GVVAKVTDKMDAAGLAWAIYDGVV-PNPTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHT-THHHHHHHHHHHTTCEEEEECBCC-SSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhc-hHHHHHHHHHHHcCCeEEEECCcc-CCCCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 3556666678889999986654433 478889999999998875433344 5566778888889999999999998876
Q ss_pred -HHHHHHHHHHHH
Q 044527 245 -HALASHLFLNAK 256 (860)
Q Consensus 245 -~~~~~~il~~a~ 256 (860)
.-|+..++....
T Consensus 99 sv~D~aK~iA~~~ 111 (386)
T 1rrm_A 99 SPQDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 344444544443
No 217
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=74.70 E-value=4.1 Score=45.02 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=47.0
Q ss_pred ccccchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhcccccc
Q 044527 616 RAHQFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASML 670 (860)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~l 670 (860)
...++..++|+++.+++..| ...|.+..+|++.+++.++++++.+++.|.+.+-+
T Consensus 372 ~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f 428 (514)
T 2r9r_B 372 QFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 428 (514)
T ss_dssp SCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999877 34678889999999999999999999999887654
No 218
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=71.62 E-value=3.1 Score=41.46 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEec
Q 044527 97 TTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISL 138 (860)
Q Consensus 97 ~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~ 138 (860)
....+.+.+.++.+|+-+.. +... .+..+-+..++|+|..
T Consensus 89 ~~~~~~L~~~Gad~IVIaCN-Tah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCN-TAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCS-GGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCC-CHHH-HHHHHHHHCCCCEEcc
Confidence 33344444459999998777 4433 4555666678998875
No 219
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=71.02 E-value=16 Score=35.20 Aligned_cols=79 Identities=14% Similarity=0.285 Sum_probs=46.3
Q ss_pred HHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcE
Q 044527 99 ASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKE 178 (860)
Q Consensus 99 ~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~ 178 (860)
+..+.. .++.+|+-+.+ +.... ...+-+..++|++... ++.++-+...+-++
T Consensus 66 ~~~L~~-~g~d~iviaCn-Ta~~~-~~~l~~~~~iPvi~i~-------------------------~a~~~~~~~~~~~r 117 (226)
T 2zsk_A 66 AKALER-AGAELIAFAAN-TPHLV-FDDVQREVNVPMVSII-------------------------DAVAEEILKRGVRK 117 (226)
T ss_dssp HHHHHH-HTCSEEEESSS-GGGGG-HHHHHHHCSSCBCCHH-------------------------HHHHHHHHHTTCCE
T ss_pred HHHHHH-cCCCEEEECCC-cHHHH-HHHHHHhCCCCEeccH-------------------------HHHHHHHHHcCCCe
Confidence 333444 48998887766 44332 3445555678876642 22222233346789
Q ss_pred EEEEEecCCCCCcCCHHHHHHHHhhCCceEe
Q 044527 179 VILIHEDNTWGNDNTIPYLFDSLHDNDIDIA 209 (860)
Q Consensus 179 v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~ 209 (860)
|+++.+.. .. ....+++.+++.|+++.
T Consensus 118 igvlaT~~--T~--~~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 118 VLLLGTKT--TM--TADFYIKTLEEKGLEVV 144 (226)
T ss_dssp EEEESSTT--TT--SCHHHHHHHHTTTCEEE
T ss_pred EEEEeCHH--HH--hhhHHHHHHHHCCCEEE
Confidence 99997533 22 22456788888888764
No 220
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=70.73 E-value=64 Score=33.18 Aligned_cols=133 Identities=13% Similarity=0.158 Sum_probs=83.0
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
=.|+.+|...+. ..+.+|+.|+.++-. ..+.+...++.-.-.+.+..+.+.++.- +++|+- ... .+.
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~LGg------~vi~l~~~~ssl~kgEsl~DTarvLs~y-~D~IviR~~~-~~~- 109 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQLGG------HGEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVER-HHS- 109 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEECBTTBCBTTTBCHHHHHHHHTTT-CSEEEEECSS-HHH-
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHcCC------eEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecCc-HHH-
Confidence 458888887775 688999999988532 3555544444433344455555555553 555442 222 233
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhC--C----CcEEEEEEecCCCCCcC
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVF--K----WKEVILIHEDNTWGNDN 192 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~--~----w~~v~ii~~~~~~g~~~ 192 (860)
+..+++..++|+|.-+.... .-.+++++++ +++ | ..+|+++.+- + .
T Consensus 110 --~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~---~--r 164 (355)
T 4a8p_A 110 --IVDLANCATIPVINGMSDYN------------------HPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA---T--Q 164 (355)
T ss_dssp --HHHHHHHCSSCEEECCCSSC------------------CHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCC---C--H
T ss_pred --HHHHHHhCCCCEEeCCCCCC------------------CcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC---c--h
Confidence 34455667899998864222 2245666654 456 5 3588887643 3 5
Q ss_pred CHHHHHHHHhhCCceEeEEE
Q 044527 193 TIPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~ 212 (860)
.+..+...+...|.++....
T Consensus 165 va~Sl~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 165 VCFSLGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHcCCEEEEEC
Confidence 78888899999998887643
No 221
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=69.99 E-value=31 Score=34.79 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEE
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv 567 (860)
+...++..+.++.. .+++.+... +...+...|.+|++|+++..... ....+ -+.|+....+++++
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~~----------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l-~~~~l~~~~~~~v~ 183 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLRP----------NAGNLKEDMESGAVDLALGLLPE---LQTGF-FQRRLFRHRYVCMF 183 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEECT----------TSSCHHHHHHHTSCCEEEECCTT---CCTTE-EEEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC----------CcccHHHHHHCCCCCEEEecCCC---CCCCc-eEEEeeccceEEEE
Confidence 44678888888885 356666553 44678999999999999854321 11122 24677888888888
Q ss_pred ecCC
Q 044527 568 PIDQ 571 (860)
Q Consensus 568 ~~~~ 571 (860)
++..
T Consensus 184 ~~~h 187 (315)
T 1uth_A 184 RKDH 187 (315)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 7654
No 222
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=69.85 E-value=10 Score=37.94 Aligned_cols=95 Identities=13% Similarity=0.155 Sum_probs=55.3
Q ss_pred cCCcEEEecCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCce
Q 044527 679 SMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGF 758 (860)
Q Consensus 679 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 758 (860)
.+++|+..--.....||.+.+..-.-+..+.+.|-+ -..|-.|+++.--.+..-+.++ +|+++++.+ ..+..
T Consensus 128 ~~~RIATkYp~l~r~yf~~~gi~~~Ii~l~GsvE~a---P~~GlADaIvDiVsTG~TLraN---gL~~i~e~I--~~SsA 199 (304)
T 1nh8_A 128 AGMRIATAYPNLVRKDLATKGIEATVIRLDGAVEIS---VQLGVADAIADVVGSGRTLSQH---DLVAFGEPL--CDSEA 199 (304)
T ss_dssp TTCEEEESCHHHHHHHHHHHTCCCEEEECSSCCTHH---HHTTSCSEEEEEESSSHHHHHT---TEEEEEEEE--EEECE
T ss_pred CCCEEEeCcHHHHHHHHHHCCCeEEEEECCCceeec---cCCCcccEEEEEeCChHHHHHC---cCEEcccEE--EEEEE
Confidence 678888876666788887656643334455555533 3445556655543333332232 688885555 56677
Q ss_pred EEEeccCCc-c--hHHHHHHHHHHhh
Q 044527 759 GFVFQKGSP-L--VHDISRAIARLRE 781 (860)
Q Consensus 759 ~~~~~k~sp-l--~~~in~~i~~l~e 781 (860)
.+..++.+. . .+.++..+.+|+.
T Consensus 200 ~LI~n~~s~~~~k~~~i~~l~~rl~~ 225 (304)
T 1nh8_A 200 VLIERAGTDGQDQTEARDQLVARVQG 225 (304)
T ss_dssp EEEEEC--------CHHHHHHHHHHH
T ss_pred EEEEccccchhhhHHHHHHHHHHHHH
Confidence 778888763 2 2468888887764
No 223
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=69.60 E-value=11 Score=37.52 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=48.7
Q ss_pred cchhHHHHHHHHhhccc-c-ccccccc-------hhhhHHHHHHHHHHHHHHhhhccccccchhhHh
Q 044527 619 QFGMIFWYSFSTLVFSQ-R-EKLFSNL-------SKFVVIVWVFVVLILSSSYTATLASMLTIQQIK 676 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~-~-~~~~s~~-------~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~~ 676 (860)
++.+++|+++.++...| + ..|.+.. .|++..+|.++++.+.++..+.++..+...++.
T Consensus 201 s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~ 267 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFR 267 (280)
T ss_dssp CHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred chhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999877 3 3465543 599999999999999999999999998887764
No 224
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=69.38 E-value=20 Score=35.73 Aligned_cols=83 Identities=7% Similarity=0.069 Sum_probs=43.6
Q ss_pred CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecccccc-ccCceEEEeccCCcchHHHHHHHHHHh--
Q 044527 704 RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTT-STNGFGFVFQKGSPLVHDISRAIARLR-- 780 (860)
Q Consensus 704 ~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~k~spl~~~in~~i~~l~-- 780 (860)
.+... +..+...++.+|++|++..-.+.... .+. +++++.+.-.. .......+++++..=.+.+-+.+.++.
T Consensus 166 ~~~~~-~~~~~~~Al~~g~vd~~~~~~p~~~~--~~~--~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~~~ 240 (275)
T 1sw5_A 166 EVKQM-EPTLMYEAIKNKQVDVIPAYTTDSRV--DLF--NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLEDR 240 (275)
T ss_dssp EEEEC-CGGGHHHHHHTTSCSEEEEETTCHHH--HHT--TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTTTC
T ss_pred cccCC-CHHHHHHHHHcCCCeEEEEeCCCcch--hcC--CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHHcc
Confidence 34333 45577899999999999887665443 221 45555442100 233445566665320034445555553
Q ss_pred -hcchHHHHHHH
Q 044527 781 -EEGTLAKIENV 791 (860)
Q Consensus 781 -e~G~~~~~~~~ 791 (860)
....+..+..+
T Consensus 241 l~~~~~~~l~~~ 252 (275)
T 1sw5_A 241 IDTDTMRALNYQ 252 (275)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 33344444443
No 225
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=69.05 E-value=48 Score=30.82 Aligned_cols=93 Identities=10% Similarity=-0.013 Sum_probs=52.5
Q ss_pred EecCCcHHHhhhcCCCCC----cCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCceEE
Q 044527 685 SQLGSVVPGALSNLNFKD----SRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGFGF 760 (860)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 760 (860)
...+.....++....... ......++....+..+..|.--+++-......+...... .....+.. ....+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l--~~~~~~~~--~~~~~~l 184 (219)
T 3kos_A 109 SYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMFTHLLSSERI--VQPFLTQI--DLGSYWI 184 (219)
T ss_dssp ESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGCHHHHHTTSS--BCCCCCCB--CSCEEEE
T ss_pred cCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhhHHHHHcCCe--eccccCCc--cCCcEEE
Confidence 334444555554332221 233566888899999999985565555444333222221 11222233 4456888
Q ss_pred EeccCCcchHHHHHHHHHHhh
Q 044527 761 VFQKGSPLVHDISRAIARLRE 781 (860)
Q Consensus 761 ~~~k~spl~~~in~~i~~l~e 781 (860)
+.+++.+....+..++..+.+
T Consensus 185 ~~~~~~~~~~~~~~f~~~l~~ 205 (219)
T 3kos_A 185 TRLQSRPETPAMREFSRWLTG 205 (219)
T ss_dssp EEETTSCCCHHHHHHHHHHHH
T ss_pred EecccccCCHHHHHHHHHHHH
Confidence 888888776666666665544
No 226
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=68.17 E-value=27 Score=34.96 Aligned_cols=120 Identities=12% Similarity=0.095 Sum_probs=68.0
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCC
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFK 175 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~ 175 (860)
.+.+..++++.++.+|+-+.+ +.++..+..+-+..++|+|... | ....+ ++..+
T Consensus 73 ~~i~~~ll~~~g~d~IviaCN-Tas~~~l~~lr~~~~iPVigi~---~------------------a~~~a----~~~~~ 126 (285)
T 2jfn_A 73 VAIVTAVQERYPLALAVVACN-TASTVSLPALREKFDFPVVGVV---P------------------AIKPA----ARLTA 126 (285)
T ss_dssp HHHHHHHHHHSCCSEEEECCH-HHHHHHHHHHHHHCSSCEECCC---C------------------CHHHH----HHHCS
T ss_pred HHHHHHHHHhCCCCEEEEECc-cccHHHHHHHHHhCCCCEEehH---H------------------HHHHH----HHhcC
Confidence 334444555458999987666 5554566667777899998842 3 10111 13345
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEe-cc--------C---CCCChHHHHHHHHhhhc--CCCeEEEE
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTS-IS--------L---ASSTHDQIIEKLSMLKS--LDTKVFVV 241 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~-~~--------~---~~~~~~~~~~~l~~i~~--~~~~viil 241 (860)
-++|+++...... ....+++.+++.|.++..... -+ . .......+...+..+.+ .++|+||+
T Consensus 127 ~~rIgVLaT~~T~----~s~~y~~~l~~~g~~~~v~~~~~~~lv~~ie~~~~~~~~~~~~l~~~l~~l~~~~~~~D~IVL 202 (285)
T 2jfn_A 127 NGIVGLLATRGTV----KRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVL 202 (285)
T ss_dssp SSEEEEEECTTGG----GCHHHHHHHHHSCTTSEEEEEECHHHHHHHHHHHHTCCCCHHHHHHHTHHHHTCSSCCSEEEE
T ss_pred CCEEEEEEcHHHH----hhHHHHHHHHHhCCCCEEeCCCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 6799998875431 124567777777743222111 00 0 11123445566666654 47899999
Q ss_pred EeCH
Q 044527 242 HMTH 245 (860)
Q Consensus 242 ~~~~ 245 (860)
.|..
T Consensus 203 GCTh 206 (285)
T 2jfn_A 203 GCTH 206 (285)
T ss_dssp CSTT
T ss_pred eCCC
Confidence 8864
No 227
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=68.13 E-value=17 Score=33.21 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCCcEEEEEEecCCCCC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC-CCeEEEEEeC
Q 044527 174 FKWKEVILIHEDNTWGN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL-DTKVFVVHMT 244 (860)
Q Consensus 174 ~~w~~v~ii~~~~~~g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~viil~~~ 244 (860)
|.-.++++|...|+-|+ +.....+.+.+++.|.++.....++ .+...+...+++..+. ++|+||..+.
T Consensus 8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~---Dd~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK---ENRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC---SCHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC---CCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 44468999998888664 1234678888999999988877776 5667888888887665 6899988874
No 228
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=67.57 E-value=38 Score=31.26 Aligned_cols=65 Identities=8% Similarity=0.007 Sum_probs=42.2
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEE
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv 567 (860)
+-.+++..+.++.. ++++.+... + .+.+|.+|++|+++...... ...+ -+.++....+++++
T Consensus 21 ~l~~~l~~f~~~~P-~v~l~i~~~------------~-~~~~l~~g~~D~~i~~~~~~---~~~~-~~~~l~~~~~~~v~ 82 (213)
T 3hhf_B 21 LLAPLAAKFNERYP-HIRLSLVSS------------E-GYINLIERKVDIALRAGELD---DSGL-RARHLFDSRFRVIA 82 (213)
T ss_dssp THHHHHHHHHHHCT-TEEEEEECC------------S-TTHHHHTTSSSEEEECC--C---CSSE-EEEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC------------C-cHHHHHhCCccEEEEEecCC---Cccc-eEEeeecceEEEEe
Confidence 45788999998885 356665532 1 13458899999998643222 1222 25778888888888
Q ss_pred ecC
Q 044527 568 PID 570 (860)
Q Consensus 568 ~~~ 570 (860)
++.
T Consensus 83 ~~~ 85 (213)
T 3hhf_B 83 SPE 85 (213)
T ss_dssp CHH
T ss_pred CHH
Confidence 755
No 229
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=66.74 E-value=64 Score=32.96 Aligned_cols=133 Identities=14% Similarity=0.133 Sum_probs=77.6
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccC-CeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNV-DLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aviGp~~~s~~~ 121 (860)
=.|+.+|...+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- .+.++=++. .+.
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~--~~~- 131 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQLGG------HGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER--HHS- 131 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS--HHH-
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHcCC------eEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc--HHH-
Confidence 458889887765 688999999988532 3455544444322222233333333321 133333332 233
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhC--C----CcEEEEEEecCCCCCcC
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVF--K----WKEVILIHEDNTWGNDN 192 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~--~----w~~v~ii~~~~~~g~~~ 192 (860)
+..+++..++|+|.-+.... .-.+++++++ +++ | ..+|+++.+- + .
T Consensus 132 --~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~---~--r 186 (339)
T 4a8t_A 132 --IVDLANCATIPVINGMSDYN------------------HPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA---T--Q 186 (339)
T ss_dssp --HHHHHHHCSSCEEECCCSSC------------------CHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSC---C--H
T ss_pred --HHHHHHhCCCCEEECCCCCc------------------CcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCC---c--h
Confidence 34455667899998864222 2245666654 556 5 3588887643 3 5
Q ss_pred CHHHHHHHHhhCCceEeEEE
Q 044527 193 TIPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~ 212 (860)
.+..+...+...|.++....
T Consensus 187 va~Sl~~~~~~~G~~v~~~~ 206 (339)
T 4a8t_A 187 VCFSLGLITTKMGMNFVHFG 206 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHHHHHHHHcCCEEEEEC
Confidence 78888899999998887643
No 230
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=66.45 E-value=47 Score=33.37 Aligned_cols=79 Identities=9% Similarity=0.113 Sum_probs=57.7
Q ss_pred cEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHH-HHHHHH
Q 044527 177 KEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHAL-ASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~-~~~il~ 253 (860)
++|+++..+ ++|.. ...+.+.+.+++.|.++..... ..+.......++.+.+.++|.||+...... ....++
T Consensus 3 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQ-KDRDIFVKKAESLGAKVFVQSA----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVK 77 (313)
T ss_dssp CEEEEEESCCSSSTTH-HHHHHHHHHHHHTSCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHH
T ss_pred cEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEECC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHH
Confidence 578999876 45666 6788999999999998876432 234455567788888889999998876443 356777
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 78 ~~~~~~i 84 (313)
T 3m9w_A 78 EAKQEGI 84 (313)
T ss_dssp HHHTTTC
T ss_pred HHHHCCC
Confidence 7777764
No 231
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=65.21 E-value=6.4 Score=41.58 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=50.1
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
+.+.++++.+| +|+.+|++...+. ...+.+.+.+++ |+++.+ ..+. .++.........+.+++.++|+||-.+.
T Consensus 42 ~~l~~~l~~~g-~r~liVtd~~~~~--~~~~~v~~~L~~-g~~~~~-~~~~-~~p~~~~v~~~~~~~~~~~~d~IIavGG 115 (387)
T 3uhj_A 42 DKLAAYLAPLG-KRALVLIDRVLFD--ALSERIGKSCGD-SLDIRF-ERFG-GECCTSEIERVRKVAIEHGSDILVGVGG 115 (387)
T ss_dssp TTTHHHHGGGC-SEEEEEECTTTHH--HHHHHC-------CCEEEE-EECC-SSCSHHHHHHHHHHHHHHTCSEEEEESS
T ss_pred HHHHHHHHHcC-CEEEEEECchHHH--HHHHHHHHHHHc-CCCeEE-EEcC-CCCCHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 34566778888 9999988655432 356677788888 988744 3445 5566778888888888889999988876
Q ss_pred H
Q 044527 245 H 245 (860)
Q Consensus 245 ~ 245 (860)
+
T Consensus 116 G 116 (387)
T 3uhj_A 116 G 116 (387)
T ss_dssp H
T ss_pred c
Confidence 5
No 232
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=64.48 E-value=54 Score=33.00 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=77.6
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccC-CeEEEEecCCChhHHH
Q 044527 44 HVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNV-DLQAIICIGMTPTGAQ 122 (860)
Q Consensus 44 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aviGp~~~s~~~~ 122 (860)
.|+.+|...+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- .+.++=.+ . .+
T Consensus 38 ~la~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~-~~--- 103 (307)
T 3tpf_A 38 TLAMIFEKNST---RTRMAFELAITELGG------KALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVN-K-HE--- 103 (307)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECS-C-HH---
T ss_pred EEEEEecCCCc---chHHhHHHHHHHcCC------eEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecC-C-hH---
Confidence 48888887764 688899999988532 3555544444322222333333333321 13333233 2 23
Q ss_pred HHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhCC----CcEEEEEEecCCCCCcCCHH
Q 044527 123 ILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVFK----WKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 123 ~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~~----w~~v~ii~~~~~~g~~~~~~ 195 (860)
.+..+++..++|+|.-+.... +-.+++++++ +++| ..+|+++.+ +. ..+.
T Consensus 104 ~~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~-~va~ 160 (307)
T 3tpf_A 104 TLLEFARYSKAPVINALSELY------------------HPTQVLGDLFTIKEWNKMQNGIAKVAFIGD----SN-NMCN 160 (307)
T ss_dssp HHHHHHHHCSSCEEEEECSSC------------------CHHHHHHHHHHHHHTTCCGGGCCEEEEESC----SS-HHHH
T ss_pred HHHHHHHhCCCCEEeCCCCCc------------------CcHHHHHHHHHHHHHhCCCCCCCEEEEEcC----CC-ccHH
Confidence 334456667899998874322 2245666664 4454 458888864 24 5788
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 161 Sl~~~~~~~G~~v~~~~ 177 (307)
T 3tpf_A 161 SWLITAAILGFEISIAM 177 (307)
T ss_dssp HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 88888889998877643
No 233
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=63.50 E-value=13 Score=28.90 Aligned_cols=98 Identities=9% Similarity=0.167 Sum_probs=52.9
Q ss_pred ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHH
Q 044527 149 YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKL 228 (860)
Q Consensus 149 ~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l 228 (860)
+-.|+.-+.. .+-..+-+++++|+.+-|.++.+|.+|.. -+-.|.+ ..|-.+.... + +.+...+...-
T Consensus 27 fkvrtvrspq---elkdsieelvkkynativvvvvddkewae--kairfvk---slgaqvliii-y---dqdqnrleefs 94 (134)
T 2l69_A 27 FKVRTVRSPQ---ELKDSIEELVKKYNATIVVVVVDDKEWAE--KAIRFVK---SLGAQVLIII-Y---DQDQNRLEEFS 94 (134)
T ss_dssp CEEEEECSHH---HHHHHHHHHTTCCCCEEEEEECSSHHHHH--HHHHHHH---HHCCCCEEEE-E---CSCHHHHHHHH
T ss_pred ceEEEecCHH---HHHHHHHHHHHHhCCeEEEEEEccHHHHH--HHHHHHH---hcCCeEEEEE-E---eCchhHHHHHH
Confidence 5567777766 77777888888888777777766655544 2222333 3343333221 2 24455555555
Q ss_pred HhhhcCCCeEEEEEeCHHHHHH-HHHHHHHcC
Q 044527 229 SMLKSLDTKVFVVHMTHALASH-LFLNAKKLG 259 (860)
Q Consensus 229 ~~i~~~~~~viil~~~~~~~~~-il~~a~~~g 259 (860)
.+++..+-.+--+ .++++... +-+-.++.|
T Consensus 95 revrrrgfevrtv-tspddfkkslerlirevg 125 (134)
T 2l69_A 95 REVRRRGFEVRTV-TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHHTTCCEEEE-SSHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCceEEEe-cChHHHHHHHHHHHHHhc
Confidence 6666666655533 34444333 333334444
No 234
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=62.64 E-value=12 Score=37.18 Aligned_cols=120 Identities=16% Similarity=0.236 Sum_probs=66.1
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCC
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFK 175 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~ 175 (860)
.+.+..+.. .++.+|+-+.+ +.++..+..+-+..++|+|... .| ++...++.-+
T Consensus 55 ~~~~~~L~~-~g~d~iviaCN-Tas~~~l~~lr~~~~iPvigi~--ep----------------------~~~~A~~~~~ 108 (267)
T 2gzm_A 55 WEMTEHLLD-LNIKMLVIACN-TATAVVLEEMQKQLPIPVVGVI--HP----------------------GSRTALKVTN 108 (267)
T ss_dssp HHHHHHHHT-TTCSEEEECCH-HHHHHHHHHHHHHCSSCEEESH--HH----------------------HHHHHHHHCS
T ss_pred HHHHHHHHH-CCCCEEEEeCc-hhhHHHHHHHHHhCCCCEEeec--HH----------------------HHHHHHHccC
Confidence 334444444 58999987666 5554466667777899998852 12 1111122345
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEEEe------ccCCCCC----hHHHHHHHHhhhcCCCeEEEEEe
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARRTS------ISLASST----HDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~i~~~~~~viil~~ 243 (860)
-++|+++...... ....+++.+++. |.++..... +.....+ ...+...++.+.+.++|+||+.|
T Consensus 109 ~~rIgVlaT~~T~----~~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVLGC 184 (267)
T 2gzm_A 109 TYHVGIIGTIGTV----KSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLILGC 184 (267)
T ss_dssp SCEEEEEECHHHH----HHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEECS
T ss_pred CCEEEEEEChHHh----ccHHHHHHHHHhCCCCEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 6788888664321 112355555555 665543211 0000111 23455666777778899999988
Q ss_pred CH
Q 044527 244 TH 245 (860)
Q Consensus 244 ~~ 245 (860)
..
T Consensus 185 Th 186 (267)
T 2gzm_A 185 TH 186 (267)
T ss_dssp TT
T ss_pred cC
Confidence 64
No 235
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=62.47 E-value=1.3e+02 Score=30.03 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=49.0
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+...++..+.++.. .+++.+... +...+..++.+|++|+++...... ...+ -+.++....++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~l~l~~~----------~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~~~~~~v 167 (313)
T 2h98_A 103 GLLPEIIYLFRQQNP-EIHIELIEC----------GTKDQINALKQGKIDLGFGRLKIT---DPAI-RRIMLHKEQLKLA 167 (313)
T ss_dssp TTHHHHHHHHHHHCT-TSEEEEEEC----------CHHHHHHHHHHTSCSEEEESSCCC---CTTE-EEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHCC-CeEEEEEeC----------ChHHHHHHHHcCCCCEEEEeCCCC---CCCe-eEEEeeeCcEEEE
Confidence 345788999998885 356666653 668899999999999998643221 1112 2467888888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
+++..
T Consensus 168 ~~~~h 172 (313)
T 2h98_A 168 IHKHH 172 (313)
T ss_dssp EETTS
T ss_pred EcCCC
Confidence 87654
No 236
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=61.87 E-value=21 Score=33.15 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=48.9
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEEE
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~lv 567 (860)
+-.+++..+.++.. .+++++... +...+..++.+|++|+++.... .....+. +.++....+++++
T Consensus 19 ~l~~~l~~f~~~~P-~i~i~l~~~----------~~~~l~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~ 83 (209)
T 2ql3_A 19 ILPSMLYAFTAEYP-RASVEFRED----------TQNRLRTQLEGGELDVAIVYDL---DLSPEWQ-TVPLMTREPMVVL 83 (209)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEEC----------CHHHHHHHHHTTSCSEEEEESS---SCCTTEE-EEEEEEECCEEEE
T ss_pred hHHHHHHHHHHHCC-CceEEEEEC----------cHHHHHHHHHcCCccEEEEecC---CCCCCce-EEEeecCceEEEE
Confidence 44788999999886 467776654 6788999999999999985321 1112222 4678888888888
Q ss_pred ecCC
Q 044527 568 PIDQ 571 (860)
Q Consensus 568 ~~~~ 571 (860)
++..
T Consensus 84 ~~~h 87 (209)
T 2ql3_A 84 GAEH 87 (209)
T ss_dssp ETTC
T ss_pred eCCC
Confidence 8654
No 237
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=61.78 E-value=85 Score=30.33 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEE
Q 044527 493 FKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAV 539 (860)
Q Consensus 493 ~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~ 539 (860)
++...++.|. +++++.. .++.....+|.+|++|+..
T Consensus 21 ~~~~~~~~Gl--~ve~~~f---------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHI--ELRIVEF---------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTE--EEEEEEC---------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEc---------CChHHHHHHHHcCCCCEec
Confidence 3445556674 6666665 3689999999999999975
No 238
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=61.68 E-value=1.3e+02 Score=29.85 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=49.1
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+-..++..+.++.. ++++.+... +...++..|.+|++|+++....... ..+ -+.++....++++
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~~----------~~~~~~~~l~~g~~Dlai~~~~~~~---~~l-~~~~L~~~~~~~v 167 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYEM----------GTKAQTEALKEGRIDAGFGRLKISD---PAI-KHSLLRNERLMVA 167 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEEC----------CHHHHHHHHHTTSCSEEEESSCCCC---TTE-EEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEeC----------CHHHHHHHHHcCCCCEEEEeCCCCC---CCc-eEEEeecceEEEE
Confidence 345788999988875 356666653 6788999999999999986432211 112 2467788888888
Q ss_pred EecCC
Q 044527 567 VPIDQ 571 (860)
Q Consensus 567 v~~~~ 571 (860)
++++.
T Consensus 168 ~~~~h 172 (312)
T 2h9b_A 168 VHASH 172 (312)
T ss_dssp EETTS
T ss_pred EcCCC
Confidence 87664
No 239
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=61.35 E-value=92 Score=30.27 Aligned_cols=70 Identities=11% Similarity=-0.018 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCc-ccEEEeceeeccc---ccceee--ccccccccce
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQK-FDAAVGDTTITAN---RSVYVD--FTLPYTDMGI 563 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~-~Di~~~~~~~t~~---r~~~~~--fs~p~~~~~~ 563 (860)
-++++.+.++.|.++++.+- +-..++..|.+|. +|+.++.-.-..+ ....++ -..++....+
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~~------------~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~l 105 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSYA------------ASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTL 105 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEEE------------CHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECE
T ss_pred HHHHHHHHHHhCCeEEEEEC------------ChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEE
Confidence 46888888888876555433 4467888888886 9998864211111 122222 2356777788
Q ss_pred EEEEecCC
Q 044527 564 GMIVPIDQ 571 (860)
Q Consensus 564 ~~lv~~~~ 571 (860)
+++++++.
T Consensus 106 vl~~~~~~ 113 (253)
T 3gzg_A 106 VLVAPASS 113 (253)
T ss_dssp EEEEETTC
T ss_pred EEEEECCC
Confidence 99998875
No 240
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=61.12 E-value=31 Score=34.45 Aligned_cols=60 Identities=17% Similarity=0.112 Sum_probs=41.4
Q ss_pred cCCcEEEe-cCCcHHHhh----hcCCCCCcCccccC-CHHHHHHHHhcCCcEEEEcchHHHHHHHhc
Q 044527 679 SMDNIGSQ-LGSVVPGAL----SNLNFKDSRLKKYN-SAEEYANALSMGSISAIVDEIPYVRAFLSK 739 (860)
Q Consensus 679 ~~~~i~~~-~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~ 739 (860)
+|++|++. .+++....+ ++.++ +.++.... ...+...++.+|++|+.+...+.+.....+
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRK 160 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHH
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhh
Confidence 89999985 566554444 33344 33444444 588999999999999999888877665444
No 241
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=60.85 E-value=84 Score=31.84 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=78.0
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
=.|+.+|...+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- +++|+- ... .+.
T Consensus 49 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~-~~~- 116 (323)
T 3gd5_A 49 KVLGLVFLKAST---RTRVSFTVAMYQLGG------QVIDLSPSNTQVGRGEPVRDTARVLGRY-VDGLAIRTFA-QTE- 116 (323)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEC----------CCHHHHHHHHTTT-CSEEEEECSS-HHH-
T ss_pred CEEEEEecCCCc---chHhhHHHHHHHcCC------eEEEeCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCC-hhH-
Confidence 368888887764 688999999988633 3455544444333334455555555553 555542 222 233
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~~~~ 195 (860)
+..+++..++|+|.-+.... .-.+++++++ ++ +...+|+++.+- + ..+.
T Consensus 117 --~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~Ti~e~~g~l~glkva~vGD~---~--rva~ 171 (323)
T 3gd5_A 117 --LEEYAHYAGIPVINALTDHE------------------HPCQVVADLLTIRENFGRLAGLKLAYVGDG---N--NVAH 171 (323)
T ss_dssp --HHHHHHHHCSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCC---C--HHHH
T ss_pred --HHHHHHhCCCCEEeCCCCCC------------------CcHHHHHHHHHHHHHhCCCCCCEEEEECCC---C--cHHH
Confidence 33455666899998875222 2245666654 33 456789988643 3 5778
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 172 Sl~~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 172 SLLLGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 88888888898877643
No 242
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=60.44 E-value=17 Score=37.77 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH 245 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~ 245 (860)
.+.++++.++.+++.+|++...+ . ...+.+.+.+++.|+++...... +++........ +.+++.++|+||..+.+
T Consensus 24 ~l~~~l~~~g~~~~livtd~~~~-~-~~~~~v~~~L~~~g~~~~~~~~~--~~~~~~~v~~~-~~~~~~~~d~IIavGGG 98 (354)
T 3ce9_A 24 NIGQIIKKGNFKRVSLYFGEGIY-E-LFGETIEKSIKSSNIEIEAVETV--KNIDFDEIGTN-AFKIPAEVDALIGIGGG 98 (354)
T ss_dssp GHHHHHGGGTCSEEEEEEETTHH-H-HHHHHHHHHHHTTTCEEEEEEEE--CCCBHHHHHHH-HTTSCTTCCEEEEEESH
T ss_pred HHHHHHHhcCCCeEEEEECccHH-H-HHHHHHHHHHHHcCCeEEEEecC--CCCCHHHHHHH-HHhhhcCCCEEEEECCh
Confidence 35667777788899999875533 2 35678888898899887543322 35566777777 88888999999988764
Q ss_pred --HHHHHHHHHHHHcCCccCCeEEEecChh
Q 044527 246 --ALASHLFLNAKKLGMMSKGYVWIATAAT 273 (860)
Q Consensus 246 --~~~~~il~~a~~~gl~~~~~~~i~~~~~ 273 (860)
-|+..++.. ..+ ..++-|.|...
T Consensus 99 sv~D~aK~vA~--~~~---~p~i~IPTT~~ 123 (354)
T 3ce9_A 99 KAIDAVKYMAF--LRK---LPFISVPTSTS 123 (354)
T ss_dssp HHHHHHHHHHH--HHT---CCEEEEESCCS
T ss_pred HHHHHHHHHHh--hcC---CCEEEecCccc
Confidence 334444332 233 34566666554
No 243
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=60.27 E-value=13 Score=37.13 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=61.7
Q ss_pred hccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEE
Q 044527 103 MQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILI 182 (860)
Q Consensus 103 i~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii 182 (860)
+.+.++.+|+-+.+ +.++.++..+-+..++|+|... .| ++...++..+-++|+++
T Consensus 70 L~~~g~d~iviaCN-Tas~~~l~~lr~~~~iPvigi~--ep----------------------a~~~A~~~~~~~rIgVl 124 (273)
T 2oho_A 70 LLTQNVKMIVFACN-TATAVAWEEVKAALDIPVLGVV--LP----------------------GASAAIKSTTKGQVGVI 124 (273)
T ss_dssp HHTTTCSEEEECCH-HHHHHHHHHHHHHCSSCEEESH--HH----------------------HHHHHHHHCSSSEEEEE
T ss_pred HHHCCCCEEEEeCc-hHhHHHHHHHHHhCCCCEEecc--HH----------------------HHHHHHHhcCCCeEEEE
Confidence 34458999987666 5554556667677789988752 22 11112233466789998
Q ss_pred EecCCCCCcCCHHHHHHHHhhC--CceEeEEEe------ccCCCCC----hHHHHHHHHhhhcCCCeEEEEEeCH
Q 044527 183 HEDNTWGNDNTIPYLFDSLHDN--DIDIARRTS------ISLASST----HDQIIEKLSMLKSLDTKVFVVHMTH 245 (860)
Q Consensus 183 ~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~i~~~~~~viil~~~~ 245 (860)
...... ....+++.+++. |+++..... +.....+ ...+...++.+.+. +|+||+.|..
T Consensus 125 aT~~T~----~~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh 194 (273)
T 2oho_A 125 GTPMTV----ASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTH 194 (273)
T ss_dssp ECHHHH----HHTHHHHHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTT
T ss_pred ECchhh----cchHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCC
Confidence 765321 112345555555 766653110 0000001 12344455556556 9999998864
No 244
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=58.75 E-value=8.5 Score=37.36 Aligned_cols=75 Identities=5% Similarity=-0.071 Sum_probs=52.1
Q ss_pred eeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccccc---ceeeccccccccc
Q 044527 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRS---VYVDFTLPYTDMG 562 (860)
Q Consensus 486 ~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~---~~~~fs~p~~~~~ 562 (860)
.|+..+|+..+.++.|.++++.+. .-..++..+.+|.+|+++..-....+.. ....-..++....
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~------------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~ 85 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAV------------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYND 85 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEE------------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECC
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEc------------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCc
Confidence 467788999999998765554443 4467899999999999876543322211 1112246888999
Q ss_pred eEEEEecCCC
Q 044527 563 IGMIVPIDQN 572 (860)
Q Consensus 563 ~~~lv~~~~~ 572 (860)
+++++|++.+
T Consensus 86 lVlV~P~~~P 95 (236)
T 3lr1_A 86 FVIVGPKNDP 95 (236)
T ss_dssp EEEEECTTCT
T ss_pred EEEEEECCCh
Confidence 9999998763
No 245
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=58.42 E-value=17 Score=38.16 Aligned_cols=97 Identities=11% Similarity=0.215 Sum_probs=64.2
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH 245 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~ 245 (860)
.+.++++.++ +++.+|++...+. ...+.+.+.+++.|+++.. ..+. .+.....+....+.+++.++|+||..+.+
T Consensus 22 ~l~~~l~~~g-~~~livtd~~~~~--~~~~~v~~~L~~~g~~~~~-~~~~-ge~~~~~v~~~~~~~~~~~~d~IIavGGG 96 (370)
T 1jq5_A 22 KIANYLEGIG-NKTVVIADEIVWK--IAGHTIVNELKKGNIAAEE-VVFS-GEASRNEVERIANIARKAEAAIVIGVGGG 96 (370)
T ss_dssp GHHHHHTTTC-SEEEEEECHHHHH--HTHHHHHHHHHTTTCEEEE-EECC-SSCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHcC-CeEEEEEChHHHH--HHHHHHHHHHHHcCCeEEE-EeeC-CCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 3566777778 9999998655332 4678889999999988753 3344 33445677788888888999999988764
Q ss_pred --HHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 246 --ALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 246 --~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
-|+..++.. ..+ ..++-|.|..
T Consensus 97 sv~D~aK~iA~--~~~---~p~i~IPTTa 120 (370)
T 1jq5_A 97 KTLDTAKAVAD--ELD---AYIVIVPTAA 120 (370)
T ss_dssp HHHHHHHHHHH--HHT---CEEEEEESSC
T ss_pred HHHHHHHHHHH--hcC---CCEEEecccc
Confidence 344444432 223 3455566653
No 246
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=58.23 E-value=17 Score=35.97 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=69.5
Q ss_pred HHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCC
Q 044527 97 TTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKW 176 (860)
Q Consensus 97 ~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w 176 (860)
+.+..|.+ .++.+|+=+.+ +.++.++..+-+..++|+|... .| ++...++.-+-
T Consensus 58 ~~~~~L~~-~g~~~IVIACN-Ta~~~al~~lr~~~~iPvigii--~p----------------------a~~~A~~~~~~ 111 (269)
T 3ist_A 58 EMTNFLVD-RGIKMLVIACN-TATAAALYDIREKLDIPVIGVI--QP----------------------GSRAALKATRN 111 (269)
T ss_dssp HHHHHHHH-TTCSEEEECCH-HHHHHHHHHHHHHCSSCEEESH--HH----------------------HHHHHHHHCSS
T ss_pred HHHHHHHH-CCCCEEEEeCC-CccHHHHHHHHHhcCCCEEeec--HH----------------------HHHHHHHHcCC
Confidence 33444544 59999987766 5555556667777889998742 22 11112233456
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhCC--ceEeEEEe------ccCCCC----ChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDND--IDIARRTS------ISLASS----THDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~g--~~i~~~~~------~~~~~~----~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
++|+++...... ....+++.+++.+ ..+..... +..... ....+...++.+.+.++|.||+.|.
T Consensus 112 ~~IGVLaT~~Ti----~s~~y~~~i~~~~~~~~v~~~~~~~lV~~vE~g~~~~~~~~~~l~~~l~~l~~~g~D~iVLGCT 187 (269)
T 3ist_A 112 NKIGVLGTLGTV----ESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCT 187 (269)
T ss_dssp SEEEEEECHHHH----HHTHHHHHHHHHCTTCEEEEEECHHHHHHHHTTCTTSHHHHHHHHHHHGGGGGSCCCEEEECST
T ss_pred CeEEEEeccchh----hHHHHHHHHHHhCCCCEEeccCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 788888875421 1123445555443 33322100 000011 1233556677777889999999886
Q ss_pred H-HHHHHHHHH
Q 044527 245 H-ALASHLFLN 254 (860)
Q Consensus 245 ~-~~~~~il~~ 254 (860)
. +-....+++
T Consensus 188 h~pll~~~i~~ 198 (269)
T 3ist_A 188 HYPLLKPIIEN 198 (269)
T ss_dssp TGGGGHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 4 444434433
No 247
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=57.97 E-value=16 Score=37.48 Aligned_cols=84 Identities=5% Similarity=-0.023 Sum_probs=54.8
Q ss_pred HhhCCCcEEEEEEec----CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH
Q 044527 171 ISVFKWKEVILIHED----NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA 246 (860)
Q Consensus 171 l~~~~w~~v~ii~~~----~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~ 246 (860)
++.-.-+.|+++..+ ++|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+.....
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYFS-ELLFHAARMAEEKGRQLLLADG----KHSAEEERQAIQYLLDLRCDAIMIYPRFL 130 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHHH-HHHHHHHHHHHHTTCEEEEEEC----TTSHHHHHHHHHHHHHTTCSEEEECCSSS
T ss_pred hhhCCCCEEEEEecCCcccChhHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 334455789999876 23444 5678888899999998876432 13344455677888888999999876543
Q ss_pred HHHHHHHHHHHcC
Q 044527 247 LASHLFLNAKKLG 259 (860)
Q Consensus 247 ~~~~il~~a~~~g 259 (860)
....+.+.+.+.+
T Consensus 131 ~~~~~~~~~~~~~ 143 (338)
T 3dbi_A 131 SVDEIDDIIDAHS 143 (338)
T ss_dssp CHHHHHHHHHHCS
T ss_pred ChHHHHHHHHcCC
Confidence 4444555666665
No 248
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=57.83 E-value=32 Score=34.45 Aligned_cols=94 Identities=12% Similarity=0.066 Sum_probs=56.3
Q ss_pred cCCcEEEecCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCce
Q 044527 679 SMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGF 758 (860)
Q Consensus 679 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 758 (860)
.+++|+..--.....||.+.+....-+..+.+.|-. -..|-.|+++.--.+..-+.++ +|+++... ..+..
T Consensus 123 ~g~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---P~~GlADaIvDivsTG~TLraN---gL~~ie~I---~~SsA 193 (299)
T 1h3d_A 123 NGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVA---PRAGLADAICDLVSTGATLEAN---GLREVEVI---YRSKA 193 (299)
T ss_dssp TTCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTHH---HHTTSCSEEEEEESSCHHHHHT---TEEEEEEE---EEECE
T ss_pred CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCccceEEecccCHHHHHHC---CCEEeEEE---EeeEE
Confidence 677888876666788887656654444455555533 3345556655443322222232 67777554 45566
Q ss_pred EEEeccCC--cc-hHHHHHHHHHHhh
Q 044527 759 GFVFQKGS--PL-VHDISRAIARLRE 781 (860)
Q Consensus 759 ~~~~~k~s--pl-~~~in~~i~~l~e 781 (860)
.+..++.+ +. ++.++..+.+|+.
T Consensus 194 ~LI~n~~s~~~~k~~~i~~l~~rl~~ 219 (299)
T 1h3d_A 194 CLIQRDGEMEESKQQLIDKLLTRIQG 219 (299)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccChhHHHHHHHHHHHHHH
Confidence 77777776 23 3578888888765
No 249
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=57.82 E-value=46 Score=33.07 Aligned_cols=128 Identities=23% Similarity=0.260 Sum_probs=70.2
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCC
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFK 175 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~ 175 (860)
.+.+..|.+ .++.+|+-+.+ +.++..+..+-+..++|+|... .| . .++ .++.-+
T Consensus 59 ~~~~~~L~~-~g~d~IViACN-Tas~~~l~~lr~~~~iPVigii--ep------------------~-~~~---A~~~~~ 112 (276)
T 2dwu_A 59 FEMVEFLKQ-FPLKALVVACN-TAAAATLAALQEALSIPVIGVI--HP------------------G-ARA---AIKVTK 112 (276)
T ss_dssp HHHHHHHTT-SCEEEEEECCH-HHHHHHHHHHHHHCSSCEEESH--HH------------------H-HHH---HHHHCS
T ss_pred HHHHHHHHH-CCCCEEEEeCC-cHHHHHHHHHHHHCCCCEEecc--HH------------------H-HHH---HHHhcC
Confidence 344444444 58999987666 5555566667777789988642 22 1 111 122345
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEEEeccC-------CCCC----hHHHHHHHHhhhcCCCeEEEEE
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARRTSISL-------ASST----HDQIIEKLSMLKSLDTKVFVVH 242 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~~~~~~-------~~~~----~~~~~~~l~~i~~~~~~viil~ 242 (860)
-++|+++......-. . .+++.+++. +.++.... -+. ...+ ...+...++.+++.++|+||+.
T Consensus 113 ~~rIgVlaT~~T~~s-~---~y~~~i~~~~~~~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLG 187 (276)
T 2dwu_A 113 KGKIGVIGTVGTIQS-N---MYEKALHELDTYLKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILG 187 (276)
T ss_dssp SSEEEEEECHHHHHT-T---HHHHHHHHHCTTCEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCeEEEEeChhhhhh-H---HHHHHHHHhCCCCEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 679999986543221 1 234444443 45543221 110 0011 1245566777777899999998
Q ss_pred eCH-HHHHHHHHH
Q 044527 243 MTH-ALASHLFLN 254 (860)
Q Consensus 243 ~~~-~~~~~il~~ 254 (860)
|.. +.....+++
T Consensus 188 CTh~p~l~~~i~~ 200 (276)
T 2dwu_A 188 CTHYPLLESYIKK 200 (276)
T ss_dssp STTGGGGHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 864 444443433
No 250
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=57.60 E-value=19 Score=34.59 Aligned_cols=113 Identities=13% Similarity=0.083 Sum_probs=65.1
Q ss_pred HHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcE
Q 044527 99 ASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKE 178 (860)
Q Consensus 99 ~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~ 178 (860)
+..+. +.++.+|+-+.+ +. .....+-+..++|+++.. .+ . .+. ....+ ++
T Consensus 68 ~~~l~-~~g~d~iviaCn-ta--~~~~~l~~~~~iPvi~i~--~~------------------~-~~~----a~~~~-~r 117 (228)
T 2eq5_A 68 AKEFE-REGVDAIIISCA-AD--PAVEKVRKLLSIPVIGAG--SS------------------V-SAL----ALAYG-RR 117 (228)
T ss_dssp HHHHH-HTTCSEEEECST-TC--TTHHHHHHHCSSCEEEHH--HH------------------H-HHH----HHTTC-SS
T ss_pred HHHHH-HCCCCEEEEeCC-ch--HHHHHHHHhCCCCEeCcc--HH------------------H-HHH----HHHhC-Ce
Confidence 33443 458998886655 44 444455566688887753 11 1 111 12345 89
Q ss_pred EEEEEecCCCCCcCCHHHHHHHH-hhCCceEeEEE-----eccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHH
Q 044527 179 VILIHEDNTWGNDNTIPYLFDSL-HDNDIDIARRT-----SISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHAL 247 (860)
Q Consensus 179 v~ii~~~~~~g~~~~~~~l~~~~-~~~g~~i~~~~-----~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~ 247 (860)
|+++..... ....+++.+ ++.|.++.... .+. .......+...+.++.+.++|+||+.|..-.
T Consensus 118 igVlat~~t-----~~~~~~~~~~~~~g~~~~~~~~~~v~~~~-~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 118 VGVLNLTEE-----TPKVIRSILGNNLIAEDHPSGVSNTLDLL-TDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EEEECSSSC-----CCHHHHHHHGGGEEEEECCTTCCSGGGGG-SHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEEEecCcc-----cHHHHHHHHHHHhCccccCCceeeHHHhc-ChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999987432 224678888 88776642210 011 0011233555666776778999999987655
No 251
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=56.93 E-value=53 Score=32.82 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=65.0
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCC
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFK 175 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~ 175 (860)
.+.+..|.. .++.+|+-+.+ +.++..+..+-+..++|+|... .| . .+. .++.-+
T Consensus 74 ~~~~~~L~~-~g~d~IVIaCN-Tas~~~l~~lr~~~~iPVigi~--e~------------------a-~~~---A~~~~~ 127 (286)
T 2jfq_A 74 VEIARKLME-FDIKMLVIACN-TATAVALEYLQKTLSISVIGVI--EP------------------G-ART---AIMTTR 127 (286)
T ss_dssp HHHHHHHTT-SCCSEEEECCH-HHHHHHHHHHHHHCSSEEEESH--HH------------------H-HHH---HHHHCS
T ss_pred HHHHHHHHH-CCCCEEEEeCC-chhHHHHHHHHHhCCCCEEecc--HH------------------H-HHH---HHHhcC
Confidence 344444444 58999887666 5554456666677789998853 22 0 111 122245
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEEEe------ccCCCCC-----hHHHHHHHHhhhcCCCeEEEEE
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARRTS------ISLASST-----HDQIIEKLSMLKSLDTKVFVVH 242 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~~~------~~~~~~~-----~~~~~~~l~~i~~~~~~viil~ 242 (860)
-++|+++...... ....+++.+++. +.++..... +.....+ ...+...++.+.+.++|+||+.
T Consensus 128 ~~rIgVLaT~~T~----~~~~y~~~l~~~~~~~~v~~~~~~~~v~~ie~g~~~~~~~~~~~l~~~~~~l~~~g~D~IVLG 203 (286)
T 2jfq_A 128 NQNVLVLGTEGTI----KSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILG 203 (286)
T ss_dssp SSEEEEEECHHHH----HHTHHHHHHHHHCTTCEEEEEECTTHHHHHHTTCTTCHHHHHHHHHHHHGGGTTCSCSEEEEE
T ss_pred CCEEEEEeChHHh----cchHHHHHHHHhCCCCEEEecCCHHHHHHHHcCCCCCchhHHHHHHHHHHHHHhCCCCEEEEc
Confidence 6788888754321 112344555544 455432111 0000111 2235566667777789999999
Q ss_pred eCH
Q 044527 243 MTH 245 (860)
Q Consensus 243 ~~~ 245 (860)
|..
T Consensus 204 CTh 206 (286)
T 2jfq_A 204 CTH 206 (286)
T ss_dssp SSS
T ss_pred CcC
Confidence 864
No 252
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=56.65 E-value=7.9 Score=39.15 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=46.5
Q ss_pred cchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhccccccc
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASMLT 671 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt 671 (860)
++.+++|+++.++...| ...|.+..+|++.+++.++++.+.....+.+...+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56689999999999877 456899999999999999999999999999877663
No 253
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=53.60 E-value=37 Score=30.78 Aligned_cols=68 Identities=12% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCcEEEEEEecCCCCC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc-CCCeEEEEEeC
Q 044527 174 FKWKEVILIHEDNTWGN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS-LDTKVFVVHMT 244 (860)
Q Consensus 174 ~~w~~v~ii~~~~~~g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~viil~~~ 244 (860)
|.-.++++|...|+-|+ +.....+.+.+++.|.++.....++ .+...+...+++..+ .++|+||..+.
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~---Dd~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK---DDKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC---SSHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC---CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 45569999998887654 1234677888889999988877776 566778888887765 47899998874
No 254
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=53.49 E-value=42 Score=33.62 Aligned_cols=128 Identities=17% Similarity=0.231 Sum_probs=71.1
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCC
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFK 175 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~ 175 (860)
.+.+..|.. .++.+|+-+.+ +.++..+..+-+..++|+|... .| . .+. .++.-+
T Consensus 76 ~~~~~~L~~-~g~d~IVIACN-Tas~~~l~~lr~~~~iPVigii--ep------------------a-~~~---A~~~~~ 129 (290)
T 2vvt_A 76 WEMADFLLK-KRIKMLVIACN-TATAVALEEIKAALPIPVVGVI--LP------------------G-ARA---AVKVTK 129 (290)
T ss_dssp HHHHHHHHT-TTCSEEEECCH-HHHHHHHHHHHHHCSSCEEESS--HH------------------H-HHH---HHHHCS
T ss_pred HHHHHHHHH-CCCCEEEEeCc-chhHHHHHHHHHhCCCCEEccc--HH------------------H-HHH---HHHhcC
Confidence 444444544 48999987666 5555566677777889998852 22 1 111 122345
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEEEeccC-------CCCC----hHHHHHHHHhhhcCCCeEEEEE
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARRTSISL-------ASST----HDQIIEKLSMLKSLDTKVFVVH 242 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~~~~~~-------~~~~----~~~~~~~l~~i~~~~~~viil~ 242 (860)
-++|+++......-. ..+++.+++. +.++.... .+. ...+ ...+...++.+.+.++|+||+.
T Consensus 130 ~~rIgVLaT~~T~~s----~~y~~~l~~~~~~~~v~~~~-~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLG 204 (290)
T 2vvt_A 130 NNKIGVIGTLGTIKS----ASYEIAIKSKAPAIEVTSLA-CPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILG 204 (290)
T ss_dssp SSEEEEEECHHHHHT----THHHHHHHTTCTTSEEEEEE-CTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEEC
T ss_pred CCEEEEEeCcHhhhh----HHHHHHHHHhCCCCEEEecc-CHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 678999876543211 1355666665 44444221 110 0011 1235566667777889999998
Q ss_pred eCH-HHHHHHHHH
Q 044527 243 MTH-ALASHLFLN 254 (860)
Q Consensus 243 ~~~-~~~~~il~~ 254 (860)
|.. +.....+++
T Consensus 205 CTh~p~l~~~i~~ 217 (290)
T 2vvt_A 205 CTHYPLLRPVIQN 217 (290)
T ss_dssp STTGGGGHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 864 444433433
No 255
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=53.03 E-value=19 Score=35.84 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=55.3
Q ss_pred cCCcEEEecCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCce
Q 044527 679 SMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGF 758 (860)
Q Consensus 679 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 758 (860)
.+++|+..--.....||.+.+.+..-+..+.+.|-. ...|-.|+++.--.+..-+.++ +|++++.. ..+..
T Consensus 114 ~~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~GlADaIvDivsTG~TLraN---gL~~ie~I---~~ssA 184 (289)
T 2vd3_A 114 RGAVIATEFPGITENYLREHGIDAEVVELTGSTEIA---PFIGVADLITDLSSTGTTLRMN---HLRVIDTI---LESSV 184 (289)
T ss_dssp TTCEEEESCHHHHHHHHHHTTCCCEEEECSSCGGGT---TTTTSCSEEEEEESSTHHHHHT---TEEEEEEE---EEECE
T ss_pred CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceeec---cCCCcccEEEEEeCChHHHHHC---CCEEeEEE---EeeEE
Confidence 567888776666788887666644333444555422 3445556666543333333332 67777554 45566
Q ss_pred EEEeccCC-c-chHHHHHHHHHHhh
Q 044527 759 GFVFQKGS-P-LVHDISRAIARLRE 781 (860)
Q Consensus 759 ~~~~~k~s-p-l~~~in~~i~~l~e 781 (860)
.+..++.+ + -++.++..+.+|+.
T Consensus 185 ~LI~n~~s~~~k~~~i~~l~~rl~~ 209 (289)
T 2vd3_A 185 KLIANRESYATKSGIIEELRTGIRG 209 (289)
T ss_dssp EEEECHHHHHHSHHHHHHHHHHHHH
T ss_pred EEEEccchhhhHHHHHHHHHHHHHH
Confidence 67777776 3 24577777777764
No 256
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=52.18 E-value=12 Score=36.41 Aligned_cols=74 Identities=7% Similarity=-0.046 Sum_probs=50.8
Q ss_pred eeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccccc---ceeeccccccccc
Q 044527 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRS---VYVDFTLPYTDMG 562 (860)
Q Consensus 486 ~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~---~~~~fs~p~~~~~ 562 (860)
.|+..+|+..+.++.|.++++.+. +-..++..+.+|.+|+.+..-....+.. ....-..|+....
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~------------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~ 85 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAA------------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYND 85 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEE------------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEEc------------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCC
Confidence 466788999999998865555443 3457889999999999876543222211 1112246788888
Q ss_pred eEEEEecCC
Q 044527 563 IGMIVPIDQ 571 (860)
Q Consensus 563 ~~~lv~~~~ 571 (860)
+++++|++.
T Consensus 86 lVlV~P~~~ 94 (237)
T 3muq_A 86 FVIVGPKAD 94 (237)
T ss_dssp EEEEECTTC
T ss_pred EEEEEeCCC
Confidence 999998876
No 257
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=51.50 E-value=46 Score=32.68 Aligned_cols=56 Identities=7% Similarity=-0.162 Sum_probs=35.6
Q ss_pred hhcCCcEEEecCCcHHHh-hhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcc-hHHHH
Q 044527 677 LASMDNIGSQLGSVVPGA-LSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDE-IPYVR 734 (860)
Q Consensus 677 ~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~-~~~~~ 734 (860)
+++|++|++...+....+ ++.. ....++.. -...+...++.+|++|+.+.- .+.+.
T Consensus 93 dLkGk~Ia~~~~~~~~~~ll~~l-l~~~~~~~-~~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 93 ALEGLRVAVPGRHTTAYFLLSLY-AQGFVPVE-VRYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHH-CSSCEEEE-CCGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred HhCCCEEEeCCCCchHHHHHHHH-hccCceee-cChHHHHHHHHCCCCCEEEEecchhhh
Confidence 458999999865554434 3321 11223332 344578899999999999985 66655
No 258
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=51.10 E-value=41 Score=33.32 Aligned_cols=131 Identities=17% Similarity=0.237 Sum_probs=70.5
Q ss_pred HHHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhC
Q 044527 95 ALTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVF 174 (860)
Q Consensus 95 a~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~ 174 (860)
+.+.+..|.++.++.+|+-+.+ +.++.++..+-+..++|+|... .| . .+. .++.-
T Consensus 54 ~~~~~~~L~~~~g~d~iViACN-Tas~~~l~~lr~~~~iPVigii--ep------------------a-~~~---A~~~~ 108 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACN-TATAIALDDIQRSVGIPVVGVI--QP------------------G-ARA---AIKVT 108 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCH-HHHHHHHHHHHHHCSSCEEESH--HH------------------H-HHH---HHHHC
T ss_pred HHHHHHHHHhhcCCCEEEEeCc-hhhHHHHHHHHHHCCCCEEccc--HH------------------H-HHH---HHHhc
Confidence 3444555555148999887666 5555566667677789998752 12 0 111 12224
Q ss_pred CCcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEEEe------ccCCCCC----hHHHHHHHHhhhcCCCeEEEEE
Q 044527 175 KWKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARRTS------ISLASST----HDQIIEKLSMLKSLDTKVFVVH 242 (860)
Q Consensus 175 ~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~~~------~~~~~~~----~~~~~~~l~~i~~~~~~viil~ 242 (860)
+-++|+++........ ..+++.+++. +.++..... +.....+ ...+...++.+.+.++|+||+.
T Consensus 109 ~~~rIgVlaT~~T~~s----~~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLG 184 (272)
T 1zuw_A 109 DNQHIGVIGTENTIKS----NAYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILG 184 (272)
T ss_dssp SSSEEEEEECHHHHHT----THHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred CCCEEEEEEChhhhhh----hHHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 5678999887532111 1244555543 555532111 0000111 1335556677777899999999
Q ss_pred eCH-HHHHHHHHH
Q 044527 243 MTH-ALASHLFLN 254 (860)
Q Consensus 243 ~~~-~~~~~il~~ 254 (860)
|.. +.....+++
T Consensus 185 CTh~pll~~~i~~ 197 (272)
T 1zuw_A 185 CTHYPILKEAIQR 197 (272)
T ss_dssp STTGGGGHHHHHH
T ss_pred ccCHHHHHHHHHH
Confidence 864 444333433
No 259
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=50.95 E-value=1.1e+02 Score=31.34 Aligned_cols=130 Identities=17% Similarity=0.204 Sum_probs=75.7
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCC----HHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGD----PFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~----~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
=.|+.+|...+. ..+.+|+.|+.+.-. ..+.+...++.-. ....++....+ . .+.++=++. .
T Consensus 71 K~la~lF~epST---RTR~SFE~A~~~LGg------~vi~l~~~~ss~~kgEsl~DTarvLs~y-~--D~IviR~~~--~ 136 (340)
T 4ep1_A 71 KILGLIFDKHST---RTRVSFEAGMVQLGG------HGMFLNGKEMQMGRGETVSDTAKVLSHY-I--DGIMIRTFS--H 136 (340)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEEESCC------CCTTHHHHHHHHH-C--SEEEEECSC--H
T ss_pred ceEEEEecCCCc---cHHHHHHHHHHHcCC------eEEEcCcccccCCCCCCHHHHHHHHHHh-C--CEEEEecCC--h
Confidence 358888887764 688899999988533 3454544443322 22233333333 1 133333332 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcC
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~ 192 (860)
+ .+..+++..++|+|.-+.... .-.+++++++ ++ +...+|+++.+- . .
T Consensus 137 ~---~~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~TI~E~~G~l~glkva~vGD~----~-n 190 (340)
T 4ep1_A 137 A---DVEELAKESSIPVINGLTDDH------------------HPCQALADLMTIYEETNTFKGIKLAYVGDG----N-N 190 (340)
T ss_dssp H---HHHHHHHHCSSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCC----C-H
T ss_pred h---HHHHHHHhCCCCEEeCCCCCC------------------CcHHHHHHHHHHHHHhCCCCCCEEEEECCC----c-h
Confidence 3 344456667899998764222 2245666654 33 456789988642 3 5
Q ss_pred CHHHHHHHHhhCCceEeEEE
Q 044527 193 TIPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~ 212 (860)
.+..+...+...|.++....
T Consensus 191 va~Sl~~~~~~~G~~v~~~~ 210 (340)
T 4ep1_A 191 VCHSLLLASAKVGMHMTVAT 210 (340)
T ss_dssp HHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHHHHHHHcCCEEEEEC
Confidence 78888888888898877643
No 260
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.51 E-value=32 Score=31.01 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=47.3
Q ss_pred EEEEEEecCC--CCC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC-CCeEEEEEeC
Q 044527 178 EVILIHEDNT--WGN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL-DTKVFVVHMT 244 (860)
Q Consensus 178 ~v~ii~~~~~--~g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~viil~~~ 244 (860)
++++|...|+ .|+ +.....+.+.+++.|.++.....++ .+...+...+++..+. ++|+||..+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~---Dd~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP---DEPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC---SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC---CCHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 6788877665 222 1345678899999999988877776 5667888888887664 7899998874
No 261
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=49.77 E-value=90 Score=24.29 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=50.7
Q ss_pred EeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHh
Q 044527 151 IQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSM 230 (860)
Q Consensus 151 ~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 230 (860)
.-..-.|. ..++-...+++..|.+-..+||+.|. ...+.|.....+.|.++-.. ....||...+++
T Consensus 54 vvvvvddk---ewaekairfvkslgaqvliiiydqdq----nrleefsrevrrrgfevrtv-------tspddfkksler 119 (134)
T 2l69_A 54 VVVVVDDK---EWAEKAIRFVKSLGAQVLIIIYDQDQ----NRLEEFSREVRRRGFEVRTV-------TSPDDFKKSLER 119 (134)
T ss_dssp EEEECSSH---HHHHHHHHHHHHHCCCCEEEEECSCH----HHHHHHHHHHHHTTCCEEEE-------SSHHHHHHHHHH
T ss_pred EEEEEccH---HHHHHHHHHHHhcCCeEEEEEEeCch----hHHHHHHHHHHhcCceEEEe-------cChHHHHHHHHH
Confidence 33455666 88888889999999999999998774 67888999999999987542 234567666665
Q ss_pred h
Q 044527 231 L 231 (860)
Q Consensus 231 i 231 (860)
+
T Consensus 120 l 120 (134)
T 2l69_A 120 L 120 (134)
T ss_dssp H
T ss_pred H
Confidence 4
No 262
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=49.15 E-value=28 Score=34.52 Aligned_cols=80 Identities=5% Similarity=0.099 Sum_probs=58.1
Q ss_pred CcEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHH
Q 044527 176 WKEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLF 252 (860)
Q Consensus 176 w~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il 252 (860)
-++|+++..+.. |.. ...+.+.+.+++.|.++..... ..+.......++.+.+.++|.||+.... ......+
T Consensus 5 ~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDL-KAYQAQIAEIERLGGTAIALDA----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEEcC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 368999987633 444 5788899999999998876432 2344555677888888899999987654 4556678
Q ss_pred HHHHHcCC
Q 044527 253 LNAKKLGM 260 (860)
Q Consensus 253 ~~a~~~gl 260 (860)
+.+.+.|.
T Consensus 80 ~~~~~~~i 87 (291)
T 3l49_A 80 QKINDAGI 87 (291)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 88888774
No 263
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=48.83 E-value=72 Score=32.01 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=80.7
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEE--ecCCChhH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAII--CIGMTPTG 120 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~avi--Gp~~~s~~ 120 (860)
=.|+.+|...+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.-++++|+ .+.. +.
T Consensus 37 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~~--~~ 105 (304)
T 3r7f_A 37 KFAANLFFEPST---RTRFSFEVAEKKLGM------NVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSED--EY 105 (304)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSST--TC
T ss_pred CEEEEEecCCCh---hHHHhHHHHHHHCCC------eEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCCh--hH
Confidence 358888887765 688899999988532 4566655454422233344444444443344443 3333 33
Q ss_pred HHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcCCH
Q 044527 121 AQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDNTI 194 (860)
Q Consensus 121 ~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~~~ 194 (860)
... +++..++|+|.-+.++. . +-.+++++++ ++ +...+|+++.+ ..++ ..+
T Consensus 106 ~~~---la~~~~vPVINagdg~~--------------~---HPtQaLaDl~Ti~e~~g~l~glkva~vGD-~~~~--rva 162 (304)
T 3r7f_A 106 YEE---LVSQVNIPILNAGDGCG--------------Q---HPTQSLLDLMTIYEEFNTFKGLTVSIHGD-IKHS--RVA 162 (304)
T ss_dssp HHH---HHHHCSSCEEESCCTTS--------------C---CHHHHHHHHHHHHHHHSCCTTCEEEEESC-CTTC--HHH
T ss_pred HHH---HHHhCCCCEEeCCCCCC--------------c---CcHHHHHHHHHHHHHhCCCCCCEEEEEcC-CCCc--chH
Confidence 333 34566899999863322 1 2245666654 33 45678988863 2233 377
Q ss_pred HHHHHHHhhCCceEeEE
Q 044527 195 PYLFDSLHDNDIDIARR 211 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~ 211 (860)
..+...+...|.++...
T Consensus 163 ~Sl~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 163 RSNAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 88888899999887764
No 264
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=48.38 E-value=44 Score=32.71 Aligned_cols=119 Identities=16% Similarity=0.213 Sum_probs=66.0
Q ss_pred HHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCC
Q 044527 96 LTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFK 175 (860)
Q Consensus 96 ~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~ 175 (860)
.+.+..+.. .++.+|+-+.+ +.++..+..+-+..++|+|... .| ++...++..+
T Consensus 52 ~~~~~~L~~-~g~d~iviaCn-Ta~~~~~~~lr~~~~iPvigi~--e~----------------------~~~~A~~~~~ 105 (254)
T 1b73_A 52 LECAGFLKD-KGVDIIVVACN-TASAYALERLKKEINVPVFGVI--EP----------------------GVKEALKKSR 105 (254)
T ss_dssp HHHHHHHHT-TTCSEEEECCH-HHHTTSHHHHHHHSSSCEEESH--HH----------------------HHHHHHHHCS
T ss_pred HHHHHHHHH-CCCCEEEEeCc-hhhHHHHHHHHHhCCCCEEeee--HH----------------------HHHHHHHccC
Confidence 444444444 58999987666 4443345556666789988752 22 1111123346
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccC-CCC-----C----hHHHHHHHHhhhcCCCeEEEEEeCH
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISL-ASS-----T----HDQIIEKLSMLKSLDTKVFVVHMTH 245 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~-~~~-----~----~~~~~~~l~~i~~~~~~viil~~~~ 245 (860)
-++|+++......-. ...++.+++.|.++.....-.. +.. + ...+...++++.+. +|+||+.|..
T Consensus 106 ~~rigVlaT~~T~~~----~~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~ 180 (254)
T 1b73_A 106 NKKIGVIGTPATVKS----GAYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTH 180 (254)
T ss_dssp SCEEEEEECHHHHHH----CHHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCC
T ss_pred CCEEEEEEChHHhhh----HHHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccC
Confidence 689999987653221 2345566677887653211000 111 1 12344555555555 9999998864
No 265
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=47.76 E-value=34 Score=33.72 Aligned_cols=71 Identities=11% Similarity=-0.008 Sum_probs=47.3
Q ss_pred eHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccccc-ceeeccccccccceEEEE
Q 044527 489 CIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRS-VYVDFTLPYTDMGIGMIV 567 (860)
Q Consensus 489 ~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~-~~~~fs~p~~~~~~~~lv 567 (860)
-.+++..+.++.. .+++++... +...++..|.+|++|+++........+. ..+. ..|+....+++++
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~~----------~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~ 109 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQGV----------GSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVV 109 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEES----------CHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhCC-CceEEEEec----------CcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEE
Confidence 4678888888873 245555543 6678999999999999986433222110 1222 4678888888888
Q ss_pred ecCC
Q 044527 568 PIDQ 571 (860)
Q Consensus 568 ~~~~ 571 (860)
++..
T Consensus 110 ~~~~ 113 (290)
T 1twy_A 110 NQAN 113 (290)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 7664
No 266
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=47.60 E-value=26 Score=31.63 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.8
Q ss_pred cEEEEEEecCC--CCC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 177 KEVILIHEDNT--WGN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 177 ~~v~ii~~~~~--~g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
.+|++|...|+ .|+ +.....+.+.+++.|.++.....++ .+ ..+...+++..+.++|+|+..+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~---Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA---DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC---SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC---CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 58888888765 222 1456778889999999988766666 45 77888887776567899998773
No 267
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=47.57 E-value=53 Score=31.98 Aligned_cols=79 Identities=9% Similarity=0.050 Sum_probs=55.4
Q ss_pred cEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHH
Q 044527 177 KEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLN 254 (860)
Q Consensus 177 ~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~ 254 (860)
+.|+++..+.. |.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+..........++.
T Consensus 3 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 77 (272)
T 3o74_A 3 RTLGFILPDLENPSYA-RIAKQLEQGARARGYQLLIASS----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRE 77 (272)
T ss_dssp CEEEEEESCTTCHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH
T ss_pred eEEEEEeCCCcChhHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHH
Confidence 57889887633 445 6788899999999998876432 2344555677888888899999887654223456667
Q ss_pred HHHcCC
Q 044527 255 AKKLGM 260 (860)
Q Consensus 255 a~~~gl 260 (860)
+.+.|.
T Consensus 78 ~~~~~i 83 (272)
T 3o74_A 78 LQDKGL 83 (272)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 777764
No 268
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=47.57 E-value=37 Score=31.31 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=49.8
Q ss_pred CCcEEEEEEecCCC--C-CcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 175 KWKEVILIHEDNTW--G-NDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 175 ~w~~v~ii~~~~~~--g-~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
.-.+|++|...|+- | .+.....+.+.+++.|.++.....++ .+...+...+++..+.++|+|+..+.
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~---Dd~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE---ADEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC---SCHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 44689999877641 2 32456788889999999998877777 56677888887765567899998773
No 269
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=47.29 E-value=58 Score=29.81 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=50.0
Q ss_pred CCCcEEEEEEecCC------C-CC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcC-CCeEEEEEe
Q 044527 174 FKWKEVILIHEDNT------W-GN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSL-DTKVFVVHM 243 (860)
Q Consensus 174 ~~w~~v~ii~~~~~------~-g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~viil~~ 243 (860)
+.--+|++|...|+ . |+ +.....+.+.+++.|.++.....++ .+...+...+++..+. ++|+||..+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~---Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP---DDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC---SCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 55679999988763 1 33 1345678888999999988877776 5667788888776554 589999877
Q ss_pred C
Q 044527 244 T 244 (860)
Q Consensus 244 ~ 244 (860)
.
T Consensus 90 G 90 (178)
T 2pjk_A 90 G 90 (178)
T ss_dssp C
T ss_pred C
Confidence 3
No 270
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=47.20 E-value=45 Score=32.78 Aligned_cols=73 Identities=7% Similarity=-0.020 Sum_probs=45.0
Q ss_pred CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecc--ccccccCceEEEeccCCcchHHHHHHHHHHhh
Q 044527 704 RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAA--KYTTSTNGFGFVFQKGSPLVHDISRAIARLRE 781 (860)
Q Consensus 704 ~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 781 (860)
.....++.......+..|.--+++-+.....+ .... .+..... .. ....++++.+++.+....+...+..+++
T Consensus 213 ~~~~~~~~~~~~~~v~~g~Giailp~~~~~~~-~~~~--~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 287 (291)
T 3szp_A 213 GRFQASALNVVRSACSEGLGITLMPDVMLREF-LEDG--SLVQVLSDWSS--NPRDIYMLYNHKDHQPEKVRLFIDFVIG 287 (291)
T ss_dssp CSEEESSHHHHHHHHHTTCCEEEEEGGGTHHH-HHTT--TSEECCTTCBC--CCEEEEEEECCGGGCCHHHHHHHHHHHH
T ss_pred CceEECcHHHHHHHHHcCCcEEEccHHHHHHH-HhCC--CeEEecCCccC--CCCcEEEEECCCCCCCHHHHHHHHHHHH
Confidence 34566788889999999985555555444333 3322 2333322 22 3567788888887777777766666554
No 271
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=47.16 E-value=34 Score=35.02 Aligned_cols=83 Identities=10% Similarity=-0.038 Sum_probs=53.8
Q ss_pred hhCCCcEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHH
Q 044527 172 SVFKWKEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALAS 249 (860)
Q Consensus 172 ~~~~w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~ 249 (860)
+.-.-+.|+++..+. +|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+.......
T Consensus 58 ~~~~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~- 131 (339)
T 3h5o_A 58 ASAKSRTVLVLIPSLANTVFL-ETLTGIETVLDAAGYQMLIGNS----HYDAGQELQLLRAYLQHRPDGVLITGLSHAE- 131 (339)
T ss_dssp -----CEEEEEESCSTTCTTH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-
T ss_pred hcCCCCEEEEEeCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-
Confidence 333456899998763 3555 6788899999999998875332 2344555677788888899999987643222
Q ss_pred HHHHHHHHcCC
Q 044527 250 HLFLNAKKLGM 260 (860)
Q Consensus 250 ~il~~a~~~gl 260 (860)
..++.+.+.+.
T Consensus 132 ~~~~~l~~~~i 142 (339)
T 3h5o_A 132 PFERILSQHAL 142 (339)
T ss_dssp THHHHHHHTTC
T ss_pred HHHHHHhcCCC
Confidence 45556666663
No 272
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=46.98 E-value=34 Score=34.50 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=42.0
Q ss_pred cchhHHHHHHHHhhccc--cccccccchh------hhHHHHHHHHHHHHHHhhhccccccc
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSK------FVVIVWVFVVLILSSSYTATLASMLT 671 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R------~l~~~w~~~~lil~~~Yta~L~s~lt 671 (860)
++.+++|+++.++...| ...|.+..+| ++.++|.++++.+.++-.+.+..++.
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999877 3457777776 59999999999999888877665553
No 273
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=46.21 E-value=34 Score=34.18 Aligned_cols=85 Identities=7% Similarity=0.029 Sum_probs=58.2
Q ss_pred CCCcEEEEEEecC---CCCCcCCHHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH-HH
Q 044527 174 FKWKEVILIHEDN---TWGNDNTIPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA-LA 248 (860)
Q Consensus 174 ~~w~~v~ii~~~~---~~g~~~~~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~-~~ 248 (860)
-+-++|+++..+. .|.. ...+.+.+.+++. |..+....... ...+.......++.+.+.++|.||+..... ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~-~~~~gi~~~a~~~~g~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 83 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWT-DVQKGIREAVTTYSDFNISANITHY-DPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYT 83 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHH-HHHHHHHHHHHHTGGGCEEEEEEEE-CSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGT
T ss_pred CCcceEEEEecCCCCchHHH-HHHHHHHHHHHHHHhCCeEEEEEcC-CCCCHHHHHHHHHHHHhcCCCEEEECCCChHHH
Confidence 3457899888764 3444 5778888899988 77776644322 223455666778888889999999877543 34
Q ss_pred HHHHHHHHHcCC
Q 044527 249 SHLFLNAKKLGM 260 (860)
Q Consensus 249 ~~il~~a~~~gl 260 (860)
...++.+.+.|.
T Consensus 84 ~~~~~~~~~~~i 95 (304)
T 3gbv_A 84 KGFTDALNELGI 95 (304)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 566777777764
No 274
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*
Probab=45.86 E-value=1.6e+02 Score=30.33 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=76.5
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccC-CeEEEEecCCChhHHH
Q 044527 44 HVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNV-DLQAIICIGMTPTGAQ 122 (860)
Q Consensus 44 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aviGp~~~s~~~~ 122 (860)
.|+.+|-..+. ..+..|+.|+.++-. ..+.+...++.-...+.+..+.+.++.- .+.++=++ . . .
T Consensus 72 ~la~lF~epST---RTR~SFE~A~~~LGg------~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~-~-~---~ 137 (358)
T 4h31_A 72 NIALIFEKAST---RTRCAFEVAAFDQGA------QVTYIGPSGSQIGDKESMKDTARVLGRMYDGIQYRGF-G-Q---A 137 (358)
T ss_dssp EEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEECSSSSCBTTTBCHHHHHHHHHHHCSEEEEECS-C-H---H
T ss_pred EEEEEeCCCCh---hhHHHHHHHHHHcCC------eEEECCcccccccCccchhHHHHHhhccCceeEeccc-c-h---h
Confidence 58888887664 688999999988532 3454444444322222333333333321 13333333 2 2 3
Q ss_pred HHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhCCC-----cEEEEEEecCCCCCcCCH
Q 044527 123 ILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVFKW-----KEVILIHEDNTWGNDNTI 194 (860)
Q Consensus 123 ~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~~w-----~~v~ii~~~~~~g~~~~~ 194 (860)
.+..+++...+|+|. +-++. . .-.+++++++ +++++ .+|+++.+- . . ..+
T Consensus 138 ~~~~la~~s~vPVIN-G~g~~--------------~---HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~--~-~-~va 195 (358)
T 4h31_A 138 IVEELGAFAGVPVWN-GLTDE--------------F---HPTQILADFLTMLEHSQGKALADIQFAYLGDA--R-N-NVG 195 (358)
T ss_dssp HHHHHHHHSSSCEEE-SCCSS--------------C---CHHHHHHHHHHHHHTTTTCCGGGCEEEEESCT--T-S-HHH
T ss_pred HHHHhhhhccCceEC-CCCcC--------------C---CchHHHHHHHHHHHHhcCCCcCceEEEecCCC--C-c-ccc
Confidence 344566777899998 43322 1 2245777765 34553 478877642 1 2 477
Q ss_pred HHHHHHHhhCCceEeEEE
Q 044527 195 PYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 195 ~~l~~~~~~~g~~i~~~~ 212 (860)
..+...+...|.++....
T Consensus 196 ~S~~~~~~~~g~~v~~~~ 213 (358)
T 4h31_A 196 NSLMVGAAKMGMDIRLVG 213 (358)
T ss_dssp HHHHHHHHHHTCEEEEES
T ss_pred hHHHHHHHhcCceEEEeC
Confidence 888888889998887643
No 275
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=45.80 E-value=57 Score=32.90 Aligned_cols=132 Identities=14% Similarity=0.219 Sum_probs=77.5
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccC-CeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNV-DLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aviGp~~~s~~~ 121 (860)
=.|+.+|...+. ..+.+|+.|+.++-. ..+.+...++.-.-.+.+..+.+.++.- .+.++=.+. .
T Consensus 46 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~--~--- 111 (309)
T 4f2g_A 46 RTLAMIFEKSST---RTRLSFEAGIFQLGG------HAVFMSTRDTQLGRGEPVEDSAQVISRMVDIIMIRTFE--Q--- 111 (309)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEECCSSCEETBEECHHHHHHHHHHHCSEEEEECSC--H---
T ss_pred ceEEEEecCCCh---hhHhhHHHHHHHcCC------eEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC--H---
Confidence 358889987764 688999999988533 3444444343312122222333333321 133222332 2
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~~~~ 195 (860)
..+..+++..++|+|.-++... +-.+++++++ ++ +...+|+++.+ +. ..+.
T Consensus 112 ~~~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~Ti~e~~g~l~glkva~vGD----~~-~va~ 168 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGLTNEY------------------HPCQVLADIFTYYEHRGPIRGKTVAWVGD----AN-NMLY 168 (309)
T ss_dssp HHHHHHHHTCSSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESC----CC-HHHH
T ss_pred HHHHHHHHhCCCCEEECCCCcc------------------CcHHHHHHHHHHHHHhCCCCCCEEEEECC----Cc-chHH
Confidence 3344466777899999873222 2245666653 33 45678998874 23 5788
Q ss_pred HHHHHHhhCCceEeEE
Q 044527 196 YLFDSLHDNDIDIARR 211 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~ 211 (860)
.+...+...|.++...
T Consensus 169 Sl~~~~~~~G~~v~~~ 184 (309)
T 4f2g_A 169 TWIQAARILDFKLQLS 184 (309)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 8888888889887764
No 276
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=45.38 E-value=26 Score=36.19 Aligned_cols=81 Identities=10% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCcEEEEEEecC---CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhc--CCCeEEEEEeCHHHHH
Q 044527 175 KWKEVILIHEDN---TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKS--LDTKVFVVHMTHALAS 249 (860)
Q Consensus 175 ~w~~v~ii~~~~---~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~--~~~~viil~~~~~~~~ 249 (860)
+-.+|+++..+. +|.. ...+.+.+.+++.|.++..... ..+.......++++.+ .++|.||+........
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~-~~~~g~~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~ 76 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWV-SYSQFMQAAARDLGLDLRILYA----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAP 76 (350)
T ss_dssp -CCEEEEEECSCTTCHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHH
T ss_pred CCCEEEEECCCCCCChHHH-HHHHHHHHHHHHcCCeEEEEEC----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHH
Confidence 346899998864 3455 6788889999999998876431 2344444566777666 5999999987555566
Q ss_pred HHHHHHHHcCC
Q 044527 250 HLFLNAKKLGM 260 (860)
Q Consensus 250 ~il~~a~~~gl 260 (860)
.+++.+.+.|.
T Consensus 77 ~~~~~~~~~gi 87 (350)
T 3h75_A 77 QILRLSQGSGI 87 (350)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHhCCC
Confidence 77777777763
No 277
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=45.24 E-value=20 Score=35.97 Aligned_cols=80 Identities=10% Similarity=0.103 Sum_probs=56.3
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~ 253 (860)
++|+++..+. +|.. ...+.+.+.+++.|..+..... ...+.......++.+.+.++|.||+.... ......++
T Consensus 5 ~~I~~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWK-RCLKGFEDAAQALNVTVEYRGA---AQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp CEEEEEESSTTSTHHH-HHHHHHHHHHHHHTCEEEEEEC---SSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred ceEEEEEccCCChHHH-HHHHHHHHHHHHcCCEEEEeCC---CcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 6888888764 3444 5778888999999998876322 12445566677888888899999887643 33456778
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 81 ~~~~~~i 87 (305)
T 3g1w_A 81 KAVDAGI 87 (305)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887774
No 278
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=44.35 E-value=1.2e+02 Score=24.30 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=61.1
Q ss_pred EeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHh
Q 044527 151 IQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSM 230 (860)
Q Consensus 151 ~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~ 230 (860)
|-...+|- ...+-+..-++.-| -+|.++|+|-+-- ....-.+.++++|+++-.. .+..||+.-+.+
T Consensus 5 fvvfssdp---eilkeivreikrqg-vrvvllysdqdek---rrrerleefekqgvdvrtv-------edkedfrenire 70 (162)
T 2l82_A 5 FVVFSSDP---EILKEIVREIKRQG-VRVVLLYSDQDEK---RRRERLEEFEKQGVDVRTV-------EDKEDFRENIRE 70 (162)
T ss_dssp EEEEESCH---HHHHHHHHHHHHTT-CEEEEEECCSCHH---HHHHHHHHHHTTTCEEEEC-------CSHHHHHHHHHH
T ss_pred EEEecCCH---HHHHHHHHHHHhCC-eEEEEEecCchHH---HHHHHHHHHHHcCCceeee-------ccHHHHHHHHHH
Confidence 34445555 66666776677666 5788888765421 2233345678899887532 356788877777
Q ss_pred hhc--CCCeEEEE--EeCHHHHHHHHHHHHHcCC
Q 044527 231 LKS--LDTKVFVV--HMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 231 i~~--~~~~viil--~~~~~~~~~il~~a~~~gl 260 (860)
|-. -.-+++++ .-+.+-...++..|++.|.
T Consensus 71 iwerypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 71 IWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp HHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 632 23344444 3456677889999999995
No 279
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=43.91 E-value=42 Score=30.34 Aligned_cols=65 Identities=12% Similarity=0.250 Sum_probs=44.2
Q ss_pred cEEEEEEecCCC--CC--cCCHHHHHHH----HhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 177 KEVILIHEDNTW--GN--DNTIPYLFDS----LHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 177 ~~v~ii~~~~~~--g~--~~~~~~l~~~----~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
.++++|...|+- |+ +.....+.+. +++.|.++.....++ .+...+...+++..+.++|+||..+.
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~---Dd~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP---EGYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC---SSHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC---CCHHHHHHHHHHHHhCCCCEEEECCC
Confidence 378888776642 21 1345678888 889999988777776 56677888888876656899998874
No 280
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=43.90 E-value=36 Score=33.45 Aligned_cols=79 Identities=8% Similarity=-0.023 Sum_probs=57.1
Q ss_pred CCcEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHH
Q 044527 175 KWKEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLF 252 (860)
Q Consensus 175 ~w~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il 252 (860)
.-+.|+++..+.. |.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+..... ...+
T Consensus 6 ~s~~Igvi~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~ 78 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFST-ELFKGISSILESRGYIGVLFDA----NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTV 78 (276)
T ss_dssp CCCEEEEEESCTTSHHHH-HHHHHHHHHHHTTTCEEEEEEC----TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHH
T ss_pred CCcEEEEEeCCCCchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHH
Confidence 3468999987643 445 6788899999999998876432 23444556778888889999999987655 5667
Q ss_pred HHHHHcCC
Q 044527 253 LNAKKLGM 260 (860)
Q Consensus 253 ~~a~~~gl 260 (860)
+.+.+.+.
T Consensus 79 ~~l~~~~i 86 (276)
T 3jy6_A 79 QEILHQQM 86 (276)
T ss_dssp HHHHTTSS
T ss_pred HHHHHCCC
Confidence 77777664
No 281
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=43.74 E-value=34 Score=35.69 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=42.8
Q ss_pred HHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccc---cccccCceEEEecc----CCc-chH----HHHHHHHHHhh
Q 044527 714 YANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAK---YTTSTNGFGFVFQK----GSP-LVH----DISRAIARLRE 781 (860)
Q Consensus 714 ~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~k----~sp-l~~----~in~~i~~l~e 781 (860)
...+|.+|++|+++...+......++ ..+++.+. .. ......+++++ ..| ... .+.++...+.+
T Consensus 210 ~~~aL~~G~vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~ 285 (365)
T 2de3_A 210 QAAVLASGDVDALYSWLPWAGELQAT---GARPVVDLGLDER-NAYASVWTVSSGLVRQRPGLVQRLVDAAVDAGLWARD 285 (365)
T ss_dssp HHHHHHSSSCSEEEEEHHHHHHHHHT---TEEESSCGGGSGG-GCEEEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcCEEEEcchhHHHHHhC---CCEEEEeCcccCC-CCceEEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999988776554432 23333221 10 12234566663 355 433 35555566665
Q ss_pred cc-hHHHHHHHHcC
Q 044527 782 EG-TLAKIENVWFN 794 (860)
Q Consensus 782 ~G-~~~~~~~~~~~ 794 (860)
+. ...++..+++.
T Consensus 286 ~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 286 HSDAVTSLHAANLG 299 (365)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhC
Confidence 52 44455555554
No 282
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=43.73 E-value=37 Score=36.50 Aligned_cols=98 Identities=12% Similarity=0.177 Sum_probs=63.6
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
..+.++++.+|.+++.+|++...+. ...+.+.+.+++.|+++.. ..+. .+....++....+.+++ ++|+||..+.
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~~--~~~~~v~~~L~~~gi~~~~-~~~~-ge~~~~~v~~~~~~~~~-~~D~IIAvGG 154 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVWN--ICANKIVDSLSQNGMTVTK-LVFG-GEASLVELDKLRKQCPD-DTQVIIGVGG 154 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHHH--HTHHHHHHHHHHTTCEEEE-EEEC-SCCCHHHHHHHHTTSCT-TCCEEEEEES
T ss_pred HHHHHHHHhcCCCEEEEEECccHHH--HHHHHHHHHHHHCCCeEEE-EeeC-CCCCHHHHHHHHHHHhh-CCCEEEEeCC
Confidence 3456677777866999998765332 3678889999999988753 2344 33455667777777778 9999998876
Q ss_pred H--HHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 245 H--ALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 245 ~--~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
+ -|+..++.. ..+ ..++-|.|..
T Consensus 155 GSviD~AK~iA~--~~g---iP~I~IPTTA 179 (450)
T 1ta9_A 155 GKTMDSAKYIAH--SMN---LPSIICPTTA 179 (450)
T ss_dssp HHHHHHHHHHHH--HTT---CCEEEEESSC
T ss_pred cHHHHHHHHHHH--hcC---CCEEEEeCCC
Confidence 4 334444332 233 3456666653
No 283
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=42.89 E-value=54 Score=29.91 Aligned_cols=65 Identities=11% Similarity=0.056 Sum_probs=45.4
Q ss_pred cEEEEEEecCC-------CCC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh-cCCCeEEEEEeC
Q 044527 177 KEVILIHEDNT-------WGN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK-SLDTKVFVVHMT 244 (860)
Q Consensus 177 ~~v~ii~~~~~-------~g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~-~~~~~viil~~~ 244 (860)
-++++|...|. .|+ +.....+.+.+++.|.++.....++ .+...+...+.+.. ..++|+|+..+.
T Consensus 16 ~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~---Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP---DDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC---SCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 37899876541 111 1234678899999999998877776 55566777776654 457899998874
No 284
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=42.53 E-value=33 Score=35.38 Aligned_cols=65 Identities=3% Similarity=-0.034 Sum_probs=43.3
Q ss_pred CCcEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe
Q 044527 175 KWKEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 175 ~w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~ 243 (860)
.-..|+++..+. +|.. ...+.+.+.+++.|..+..... . ..+.......++.+.+.++|.||+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPS-QIVAAILSRADQLGASVVVSMV-E--RSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC-C--SSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHH-HHHHHHHHHHHHcCCEEEEEeC-C--CCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 446899998753 3444 5778888999999998776432 1 12234445667778888899988874
No 285
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=42.15 E-value=30 Score=23.20 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 044527 828 ISSTLALVIFLVTSIYKRTFW 848 (860)
Q Consensus 828 ~g~~ls~~vf~~E~~~~~~~~ 848 (860)
+|+++.+++.+.-.+|.|+++
T Consensus 19 VGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 19 VGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhheehhh
Confidence 344444444444444444333
No 286
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=41.90 E-value=47 Score=32.91 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=56.5
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH----HHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA----LASH 250 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~----~~~~ 250 (860)
+.|+++..+. .|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+..... ....
T Consensus 16 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFP-SIIRGIESYLSEQGYSMLLTST----NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHH
Confidence 8999998763 3445 6788889999999998876432 23445556778888889999999876432 3445
Q ss_pred HHHHHHHcCC
Q 044527 251 LFLNAKKLGM 260 (860)
Q Consensus 251 il~~a~~~gl 260 (860)
.++.+.+.+.
T Consensus 91 ~~~~~~~~~i 100 (298)
T 3tb6_A 91 YYLNLEKNGI 100 (298)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 6777777774
No 287
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=41.72 E-value=37 Score=35.04 Aligned_cols=84 Identities=8% Similarity=0.018 Sum_probs=53.6
Q ss_pred HhhCCCcEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHH
Q 044527 171 ISVFKWKEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALA 248 (860)
Q Consensus 171 l~~~~w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~ 248 (860)
++.-.-+.|+++..+. .|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+.......
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~ 139 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFA-QTAQSLTDVLEQGGLQLLLGYT----AYSPEREEQLVETMLRRRPEAMVLSYDGHTE 139 (355)
T ss_dssp ------CEEEEEESCSBCHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCH
T ss_pred hhcCCCCEEEEEeCCCCchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCH
Confidence 3333456899998763 2444 5778889999999998876432 2344455667788888899999987654332
Q ss_pred HHHHHHHHHcCC
Q 044527 249 SHLFLNAKKLGM 260 (860)
Q Consensus 249 ~~il~~a~~~gl 260 (860)
..++.+.+.+.
T Consensus 140 -~~~~~l~~~~i 150 (355)
T 3e3m_A 140 -QTIRLLQRASI 150 (355)
T ss_dssp -HHHHHHHHCCS
T ss_pred -HHHHHHHhCCC
Confidence 45666666663
No 288
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=39.98 E-value=2.7e+02 Score=28.23 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=76.3
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEE--EEEecCCCCHHHHHHHHHHhhccCCeEEEEec-CCChh
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLI--LHSRDSQGDPFHALTTASNLMQNVDLQAIICI-GMTPT 119 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~--~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp-~~~s~ 119 (860)
=.|+.+|...+. ..+.+|+.|+.+.-.+ .+. +.. ++.-.-.+.+..+.+.++.- +++|+-= .. .+
T Consensus 45 k~la~lF~e~ST---RTR~SFE~A~~~LGg~------~i~~~l~~-~ss~~kgEsl~DTarvls~~-~D~iviR~~~-~~ 112 (328)
T 3grf_A 45 KTLLAFFAKPSL---RTRVSLETAMTRLGGH------AIYYELGA-NSNVGGKETVQDTAEVFSRM-VDICTARLAT-KE 112 (328)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHHTCE------EEEEEC-----------CHHHHHHHHTTT-CSEEEEECSS-HH
T ss_pred CEEEEEecCCCc---hHHHHHHHHHHHCCCe------EEccccCc-cccCCCCCCHHHHHHHHHhh-CCEEEEecCC-hh
Confidence 358888887764 6889999999986433 333 444 54433344555555666553 5555432 22 33
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhCC----------CcEEEEEEecC
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVFK----------WKEVILIHEDN 186 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~~----------w~~v~ii~~~~ 186 (860)
.+..+++..++|+|.-+.... +-.+++++++ +++| ..+|+++.+-
T Consensus 113 ---~~~~lA~~~~vPVINag~~~~------------------HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~- 170 (328)
T 3grf_A 113 ---MMREMAQHASVPCINALDDFG------------------HPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDS- 170 (328)
T ss_dssp ---HHHHHHHHCSSCEEESSCSSC------------------CHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCC-
T ss_pred ---HHHHHHHhCCCCEEeCCCCCC------------------CcHHHHHHHHHHHHHhCCccccccccCCcEEEEeCCC-
Confidence 334456667899998764322 2235555553 3444 4588887642
Q ss_pred CCCCcCCHHHHHHHHhhCCceEeEE
Q 044527 187 TWGNDNTIPYLFDSLHDNDIDIARR 211 (860)
Q Consensus 187 ~~g~~~~~~~l~~~~~~~g~~i~~~ 211 (860)
. . ..+..+...+...|.++...
T Consensus 171 -~-~-~va~Sl~~~~~~~G~~v~~~ 192 (328)
T 3grf_A 171 -M-N-NVTYDLMRGCALLGMECHVC 192 (328)
T ss_dssp -S-S-HHHHHHHHHHHHHTCEEEEE
T ss_pred -C-c-chHHHHHHHHHHcCCEEEEE
Confidence 1 2 46778888888889887764
No 289
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=39.93 E-value=44 Score=34.62 Aligned_cols=75 Identities=5% Similarity=0.033 Sum_probs=53.2
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
..+.++++.+|.+|+.+|++... . ...+.+.+.+++.++.+ +. .+. ++.........++.+++.++|+||-.+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~--~-~~~~~v~~~L~~~~~~v-~~-~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG 96 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQ--K-GDAEALASRLGRLAAGV-FS-EAA-MHTPVEVTKTAVEAYRAAGADCVVSLGG 96 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGG--H-HHHHHHHHHHGGGEEEE-EC-CCC-TTCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHhCCCEEEEEecCch--h-hHHHHHHHHHhhCCcEE-ec-CcC-CCCcHHHHHHHHHHHhccCCCEEEEeCC
Confidence 44677788889999999986543 2 45677888888765432 22 222 3455667788888889999999988887
Q ss_pred H
Q 044527 245 H 245 (860)
Q Consensus 245 ~ 245 (860)
+
T Consensus 97 G 97 (353)
T 3hl0_A 97 G 97 (353)
T ss_dssp H
T ss_pred c
Confidence 5
No 290
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=39.66 E-value=49 Score=33.87 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=48.5
Q ss_pred cccchhHHHHHHHHhhccc-c-cccc--ccchhhhHHHHHHHHHHHHHHhhhccccccchhhH
Q 044527 617 AHQFGMIFWYSFSTLVFSQ-R-EKLF--SNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQI 675 (860)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~-~-~~~~--s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~~ 675 (860)
..++..++|+++.++...| + ..|. +..+|++..+-.+.++++.+.-++-+.+-++-+.-
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~ 151 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKK 151 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 3578899999999999877 4 3464 57799999999999999999999988877765443
No 291
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=39.03 E-value=46 Score=32.92 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCcEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHH
Q 044527 175 KWKEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHL 251 (860)
Q Consensus 175 ~w~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~i 251 (860)
.-++|+++..+.. |.. ...+.+.+.+++.|.++..... ..+.......++.+.+.++|.||+.... +.....
T Consensus 7 ~~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~ 81 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQ-RLINAFKAEAKANKYEALVATS----QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSA 81 (293)
T ss_dssp --CEEEEEESCSCSHHHH-HHHHHHHHHHHHTTCEEEEEEC----SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHH
T ss_pred CCcEEEEEEecCCcHHHH-HHHHHHHHHHHHcCCEEEEECC----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHH
Confidence 4468999987632 444 5788889999999998876432 2345555677888888899999887653 333466
Q ss_pred HHHHHHcCC
Q 044527 252 FLNAKKLGM 260 (860)
Q Consensus 252 l~~a~~~gl 260 (860)
++.+.+.+.
T Consensus 82 ~~~~~~~~i 90 (293)
T 3l6u_A 82 IEEAKKAGI 90 (293)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 777777774
No 292
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=39.02 E-value=1.7e+02 Score=29.21 Aligned_cols=133 Identities=13% Similarity=0.227 Sum_probs=82.2
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- +++|+= ... .+..
T Consensus 46 k~~~~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~-~~~~ 114 (301)
T 2ef0_A 46 KVLALLFEKPSL---RTRTTLEVAMVHLGG------HAVYLDQKQVGIGEREPVRDVAKNLERF-VEGIAARVFR-HETV 114 (301)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEEEGGGSCTTTCCCHHHHHHHHTTT-CSEEEEECSS-HHHH
T ss_pred CEEEEEeccCCc---chHHHHHHHHHHcCC------eEEEECCcccccCCCCchHHHHHHHHHh-CCEEEEecCC-hHHH
Confidence 458888877664 688999999988532 4566655554433334455555555552 444442 223 3333
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~~~~ 195 (860)
..+++..++|+|.-+.... +-.+++++++ ++ +...+|+++.+. . ..+.
T Consensus 115 ---~~la~~~~vPVINa~~~~~------------------HPtQaLaDl~Ti~e~~g~l~gl~ia~vGD~----~-rva~ 168 (301)
T 2ef0_A 115 ---EALARHAKVPVVNALSDRA------------------HPLQALADLLTLKEVFGGLAGLEVAWVGDG----N-NVLN 168 (301)
T ss_dssp ---HHHHHHCSSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCC----C-HHHH
T ss_pred ---HHHHHHCCCCEEeCCCCcc------------------CchHHHHHHHHHHHHhCCcCCcEEEEECCC----c-hhHH
Confidence 3455666899999663222 2245666664 33 345788887653 3 5788
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 169 Sl~~~~~~~g~~v~~~~ 185 (301)
T 2ef0_A 169 SLLEVAPLAGLKVRVAT 185 (301)
T ss_dssp HHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHcCCEEEEEC
Confidence 88888988998887643
No 293
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=39.01 E-value=60 Score=33.19 Aligned_cols=76 Identities=7% Similarity=0.059 Sum_probs=50.5
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHHHH
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLNAK 256 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~a~ 256 (860)
+++.+|+.... |.....+.+.+.+++.|+++.....-. .+ +......+....+.|.||+.+...+...+++.+.
T Consensus 30 ~~~~vi~Np~s-g~~~~~~~i~~~l~~~g~~~~~~~t~~---~~--~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 30 PASLLILNGKS-TDNLPLREAIMLLREEGMTIHVRVTWE---KG--DAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp CCEEEEECSSS-TTCHHHHHHHHHHHTTTCCEEEEECCS---TT--HHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred ceEEEEECCCC-CCCchHHHHHHHHHHcCCcEEEEEecC---cc--hHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 67888886443 330245667788888998876644321 22 3334444444557899999999999999999887
Q ss_pred Hc
Q 044527 257 KL 258 (860)
Q Consensus 257 ~~ 258 (860)
+.
T Consensus 104 ~~ 105 (332)
T 2bon_A 104 QC 105 (332)
T ss_dssp HC
T ss_pred hc
Confidence 54
No 294
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=38.99 E-value=26 Score=37.22 Aligned_cols=84 Identities=8% Similarity=0.221 Sum_probs=53.8
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH 245 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~ 245 (860)
.+.+.++ ++ +++.+|+++.........+.+.+.++ |+++....... +++........++.+++.++|+||..+.+
T Consensus 42 ~l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 42 GLREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIE-PNPAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp GHHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCC-SSCBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred HHHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcC-CCcCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 3556666 67 89999985542222025677777776 77654332233 44566778888888899999999988764
Q ss_pred --HHHHHHHHH
Q 044527 246 --ALASHLFLN 254 (860)
Q Consensus 246 --~~~~~il~~ 254 (860)
-|+..++..
T Consensus 117 sviD~AK~iA~ 127 (408)
T 1oj7_A 117 SVLDGTKFIAA 127 (408)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 344444433
No 295
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=38.79 E-value=30 Score=34.27 Aligned_cols=40 Identities=28% Similarity=0.278 Sum_probs=27.0
Q ss_pred HHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCC-CCcEEec
Q 044527 97 TTASNLMQNVDLQAIICIGMTPTGAQILADLGSRA-KIPIISL 138 (860)
Q Consensus 97 ~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~-~ip~Is~ 138 (860)
+.+..|.+ .++.+|+-+.+ +.++.++..+-+.. ++|+|..
T Consensus 60 ~~~~~L~~-~g~~~iVIACN-Ta~~~al~~lr~~~~~iPvigi 100 (268)
T 3out_A 60 QTAKFLID-QEVKAIIIACN-TISAIAKDIVQEIAKAIPVIDV 100 (268)
T ss_dssp HHHHHHHH-TTCSEEEECCH-HHHHHHHHHHHHHHTTSCEEEH
T ss_pred HHHHHHHH-CCCCEEEEeCC-ChHHHHHHHHHHhcCCCCEEec
Confidence 33444444 59999998766 55555556666777 8999974
No 296
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=38.60 E-value=3.2e+02 Score=27.58 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=79.6
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- +++|+- ... .+..
T Consensus 59 k~la~lF~epST---RTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~-~~~~ 127 (325)
T 1vlv_A 59 MTLAMIFEKRST---RTRLAFETAFAEEGG------HPIFLSPNDIHLGAKESLEDTARVLGRM-VDAIMFRGYK-QETV 127 (325)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEECTTTCCTTTSSCHHHHHHHHHTT-CSEEEEESSC-HHHH
T ss_pred CEEEEEeccCCc---chHHHHHHHHHHcCC------eEEEECCccccCCCCcCHHHHHHHHHHh-CCEEEEECCC-hHHH
Confidence 468888887664 688999999988532 3555544444322233444444444442 333332 223 3444
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhC---CCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVF---KWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~---~w~~v~ii~~~~~~g~~~~~~ 195 (860)
.. +++..++|+|.-+.... .-.+++++++ +++ ...+|+++.+ .. . ..+.
T Consensus 128 ~~---lA~~~~vPVINa~~~~~------------------HPtQaLaDl~Ti~e~~g~l~gl~va~vGD--~~-~-rva~ 182 (325)
T 1vlv_A 128 EK---LAEYSGVPVYNGLTDEF------------------HPTQALADLMTIEENFGRLKGVKVVFMGD--TR-N-NVAT 182 (325)
T ss_dssp HH---HHHHHCSCEEESCCSSC------------------CHHHHHHHHHHHHHHHSCSTTCEEEEESC--TT-S-HHHH
T ss_pred HH---HHHhCCCCEEeCCCCCC------------------CcHHHHHHHHHHHHHhCCcCCcEEEEECC--CC-c-CcHH
Confidence 44 44555799999653222 2245666664 333 4468888765 22 3 5788
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 183 Sl~~~~~~~G~~v~~~~ 199 (325)
T 1vlv_A 183 SLMIACAKMGMNFVACG 199 (325)
T ss_dssp HHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHCCCEEEEEC
Confidence 88899999999887643
No 297
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=38.56 E-value=1.7e+02 Score=29.29 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=60.1
Q ss_pred eEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-ceEeecCCC----chhHHHHHHHHHHHhhCC-------
Q 044527 108 LQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-YSIQIDQDD----EASQSQARGISDFISVFK------- 175 (860)
Q Consensus 108 v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~p~~----~~~~~~~~ai~~~l~~~~------- 175 (860)
+.-++||.. .+....++.++...++=++....+.. ..++ +|+|+.-.. ...+.+-+++..+.+.++
T Consensus 24 iLtv~c~Dr-pGIVa~VS~~La~~g~NI~d~~q~~d-~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~la~~l~m~~~l~~ 101 (302)
T 3o1l_A 24 RLVIACPDR-VGIVAKVSNFLASHNGWITEASHHSD-NLSGWFFMRHEIRADTLPFDLDGFREAFTPIAEEFSMDWRITD 101 (302)
T ss_dssp EEEEEEECC-TTHHHHHHHHHHHTTCCEEEEEEEEE-TTTTEEEEEEEEEGGGSSSCHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEECCCC-CCHHHHHHHHHHHCCCCEEEeeEEec-CCCCeEEEEEEEecCCCCCCHHHHHHHHHHHHHHhCCeeeecc
Confidence 566789999 99999999998888877776554433 3344 777773211 001255566666655543
Q ss_pred ---CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEE
Q 044527 176 ---WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARR 211 (860)
Q Consensus 176 ---w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~ 211 (860)
-+|++++.+.. | +..+++-+..++. +.+|+..
T Consensus 102 ~~~~~ri~vl~Sg~--g--~nl~~ll~~~~~g~l~~~I~~V 138 (302)
T 3o1l_A 102 SAQKKRVVLMASRE--S--HCLADLLHRWHSDELDCDIACV 138 (302)
T ss_dssp TTSCCEEEEEECSC--C--HHHHHHHHHHHTTCSCSEEEEE
T ss_pred cCCCcEEEEEEeCC--c--hhHHHHHHHHHCCCCCcEEEEE
Confidence 24889888655 3 3455566655543 3455543
No 298
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=38.26 E-value=45 Score=33.82 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=56.4
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~ 253 (860)
++|+++..+. +|.. ...+.+.+.+++.|.++..... ..+...-...++.+.+.++|.||+.... ......++
T Consensus 4 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~ 78 (330)
T 3uug_A 4 GSVGIAMPTKSSARWI-DDGNNIVKQLQEAGYKTDLQYA----DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLK 78 (330)
T ss_dssp CEEEEEECCSSSTHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHH
T ss_pred cEEEEEeCCCcchHHH-HHHHHHHHHHHHcCCEEEEeeC----CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHH
Confidence 6899998763 4555 6788899999999998876432 2344455667777777889999887654 34466778
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 79 ~~~~~gi 85 (330)
T 3uug_A 79 QAGEQGI 85 (330)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887774
No 299
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=37.77 E-value=24 Score=34.97 Aligned_cols=52 Identities=10% Similarity=0.220 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHhhccc--cccccccchhhhHHHHHHHHHHHHHHhhhcccccc
Q 044527 619 QFGMIFWYSFSTLVFSQ--REKLFSNLSKFVVIVWVFVVLILSSSYTATLASML 670 (860)
Q Consensus 619 ~~~~~~~~~~~~~~~~~--~~~~~s~~~R~l~~~w~~~~lil~~~Yta~L~s~l 670 (860)
++.+++|+++.++...| ...|.+..+|++.+++.++++.+...+.+.+...+
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999877 45689999999999999999999999888875443
No 300
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=37.75 E-value=3.3e+02 Score=27.36 Aligned_cols=133 Identities=18% Similarity=0.260 Sum_probs=83.3
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...+++-.-.+.+..+.+.++.- +++|+- ... .+.
T Consensus 47 k~la~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~-~~~- 114 (315)
T 1pvv_A 47 KTLAMIFQKPST---RTRVSFEVAMAHLGG------HALYLNAQDLQLRRGETIADTARVLSRY-VDAIMARVYD-HKD- 114 (315)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTS------EEEEEEGGGSTTTTTCCHHHHHHHHTTT-CSEEEEECSS-HHH-
T ss_pred CEEEEEecCCCc---chHHHHHHHHHHcCC------eEEEECCccccCCCCcCHHHHHHHHHHh-CcEEEEecCc-hHH-
Confidence 468888887665 688999999988532 4666665555533334455555555552 444442 222 333
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~~~~ 195 (860)
+..+++..++|+|.-+.... +-.+++++++ ++ +...+|+++.+. . ..+.
T Consensus 115 --~~~lA~~~~vPVINa~~~~~------------------HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~----~-rva~ 169 (315)
T 1pvv_A 115 --VEDLAKYATVPVINGLSDFS------------------HPCQALADYMTIWEKKGTIKGVKVVYVGDG----N-NVAH 169 (315)
T ss_dssp --HHHHHHHCSSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCC----C-HHHH
T ss_pred --HHHHHHhCCCCEEcCCCCCC------------------CcHHHHHHHHHHHHHhCCcCCcEEEEECCC----c-chHH
Confidence 34455666899999654322 2245666664 33 345688887653 3 5888
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 170 Sl~~~~~~~g~~v~~~~ 186 (315)
T 1pvv_A 170 SLMIAGTKLGADVVVAT 186 (315)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEC
Confidence 89999999999887643
No 301
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=37.66 E-value=37 Score=35.28 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=62.1
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
..+.++++.++.+|+.+|++...+ ...+.+.+.+++.++.+ +. ... +++........++.+++.++|+||-.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~---~~~~~v~~~L~~~~~~~-f~-~v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG 98 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ---AEAERIADLLGPLSAGV-YA-GAV-MHVPIESARDATARAREAGADCAVAVGG 98 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH---HHHHHHHHHHGGGEEEE-EC-CCC-TTCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH---HHHHHHHHHhccCCEEE-ec-CCc-CCCCHHHHHHHHHHhhccCCCEEEEeCC
Confidence 446777888999999999865432 34677888887765332 22 222 3445667778888888899999998887
Q ss_pred HH--HHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 245 HA--LASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 245 ~~--~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
+. |+..++.. ..+ ..++-|.|..
T Consensus 99 GsviD~aK~iA~--~~~---~p~i~IPTT~ 123 (358)
T 3jzd_A 99 GSTTGLGKAIAL--ETG---MPIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHHH--HHC---CCEEEEECSS
T ss_pred cHHHHHHHHHHh--ccC---CCEEEEeCCc
Confidence 53 23333322 233 3455666654
No 302
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.50 E-value=61 Score=32.01 Aligned_cols=83 Identities=5% Similarity=-0.012 Sum_probs=51.5
Q ss_pred HhhCCCcEEEEEEec----CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH
Q 044527 171 ISVFKWKEVILIHED----NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA 246 (860)
Q Consensus 171 l~~~~w~~v~ii~~~----~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~ 246 (860)
++.-.-.+|+++..+ ++|.. ...+.+.+.+++.|.++.... ...+.......++.+.+.++|.||+.....
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~----~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 88 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFS-ELLFHAARMAEEKGRQLLLAD----GKHSAEEERQAIQYLLDLRCDAIMIYPRFL 88 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHH-HHHHHHHHHHHHTTCEEEEEC----CTTSHHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred hhcCCCceEEEEeCCcccCCchHH-HHHHHHHHHHHHCCCEEEEEe----CCCCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 333445689999875 23555 677888889999999876532 123344455677777788999998876532
Q ss_pred HHHHHHHHHHH-cC
Q 044527 247 LASHLFLNAKK-LG 259 (860)
Q Consensus 247 ~~~~il~~a~~-~g 259 (860)
.. ..++.+.+ .+
T Consensus 89 ~~-~~~~~l~~~~~ 101 (296)
T 3brq_A 89 SV-DEIDDIIDAHS 101 (296)
T ss_dssp CH-HHHHHHHHTCS
T ss_pred Ch-HHHHHHHhcCC
Confidence 22 34555666 55
No 303
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=37.30 E-value=42 Score=33.46 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=52.8
Q ss_pred cEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHH
Q 044527 177 KEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~ 253 (860)
.+|+++..+ ++|.. ...+.+.+.+++.|+++.... + ...+.......++++...+++.||+.... ......++
T Consensus 5 ~~Ig~i~~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (303)
T 3d02_A 5 KTVVNISKVDGMPWFN-RMGEGVVQAGKEFNLNASQVG--P-SSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFK 80 (303)
T ss_dssp EEEEEECSCSSCHHHH-HHHHHHHHHHHHTTEEEEEEC--C-SSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHH
T ss_pred eEEEEEeccCCChHHH-HHHHHHHHHHHHcCCEEEEEC--C-CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 578888754 33555 677888899999998876422 1 11334445566777778889998887653 33445667
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 81 ~~~~~~i 87 (303)
T 3d02_A 81 KARDAGI 87 (303)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777663
No 304
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=37.19 E-value=3e+02 Score=27.76 Aligned_cols=133 Identities=20% Similarity=0.237 Sum_probs=77.1
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccC-CeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNV-DLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aviGp~~~s~~~ 121 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- .+.++=.+ . .+..
T Consensus 47 k~l~~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~-~-~~~~ 115 (321)
T 1oth_A 47 KSLGMIFEKRST---RTRLSTETGFALLGG------HPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVY-K-QSDL 115 (321)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEEETTTSCBTTTBCHHHHHHHHHHHCSEEEEECS-C-HHHH
T ss_pred CEEEEEecCCCc---chHHHHHHHHHHcCC------eEEEECCCcCcCCCCCCHHHHHHHHHHhCCEEEEeCC-C-hhHH
Confidence 468888877664 688999999988532 4555554444322222233333333321 13333233 3 3343
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhC---CCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVF---KWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~---~w~~v~ii~~~~~~g~~~~~~ 195 (860)
. .+++..++|+|.-+.... +-.+++++++ +++ ...+|+++.+ +. ..+.
T Consensus 116 ~---~lA~~~~vPVINa~~~~~------------------HPtQaLaDl~Ti~e~~g~l~gl~va~vGD----~~-~va~ 169 (321)
T 1oth_A 116 D---TLAKEASIPIINGLSDLY------------------HPIQILADYLTLQEHYSSLKGLTLSWIGD----GN-NILH 169 (321)
T ss_dssp H---HHHHHCSSCEEESCCSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESC----SS-HHHH
T ss_pred H---HHHHhCCCCEEcCCCCCC------------------CcHHHHHHHHHHHHHhCCcCCcEEEEECC----ch-hhHH
Confidence 3 455666899999653221 2245666664 333 4568888765 23 5777
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 170 Sl~~~~~~~G~~v~~~~ 186 (321)
T 1oth_A 170 SIMMSAAKFGMHLQAAT 186 (321)
T ss_dssp HHHTTTGGGTCEEEEEC
T ss_pred HHHHHHHHcCCeEEEEC
Confidence 88888888898887643
No 305
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=37.12 E-value=35 Score=35.20 Aligned_cols=79 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred CcEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHH
Q 044527 176 WKEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFL 253 (860)
Q Consensus 176 w~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~ 253 (860)
-+.|+++..+ ++|.. ...+.+.+.+++.|..+..... . .+.......++.+.+.++|.||+....... ..++
T Consensus 66 s~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~ 139 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFA-AMVTEIQSTASKAGLATIITNS-N---EDATTMSGSLEFLTSHGVDGIICVPNEECA-NQLE 139 (348)
T ss_dssp --CEEEEESCSSSHHHH-HHHHHHHHHHHHTTCCEEEEEC-T---TCHHHHHHHHHHHHHTTCSCEEECCCGGGH-HHHH
T ss_pred CCEEEEEeCCCCCcHHH-HHHHHHHHHHHHcCCEEEEEeC-C---CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHH
Confidence 3579999865 33444 5778888899999988765331 1 334445567777888889998887654332 4456
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 140 ~l~~~~i 146 (348)
T 3bil_A 140 DLQKQGM 146 (348)
T ss_dssp HHHHC-C
T ss_pred HHHhCCC
Confidence 6666663
No 306
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=36.88 E-value=3.1e+02 Score=27.84 Aligned_cols=131 Identities=14% Similarity=0.059 Sum_probs=77.4
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC---C-CHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ---G-DPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~---~-~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
=.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...+++ + .....++....+. .+.++=++. .
T Consensus 46 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~~---D~IviR~~~--~ 111 (335)
T 1dxh_A 46 KNIALIFEKTST---RTRCAFEVAAYDQGA------NVTYIDPNSSQIGHKESMKDTARVLGRMY---DAIEYRGFK--Q 111 (335)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEECTTTCCBTTTBCHHHHHHHHHHHC---SEEEEECSC--H
T ss_pred CEEEEEecCCCc---chHHHHHHHHHHcCC------eEEEECCccccCcCCCcHHHHHHHHHhhC---CEEEEecCC--h
Confidence 458888887664 688999999988532 34444433333 2 1223333333332 233333443 3
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhCC----CcEEEEEEecCCCCCc
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVFK----WKEVILIHEDNTWGND 191 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~~----w~~v~ii~~~~~~g~~ 191 (860)
+. +..+++..++|+|.-+. +. . +-.+++++++ +++| ..+|+++.+. . .
T Consensus 112 ~~---~~~lA~~s~vPVINa~~-~~--------------~---HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~--~-~- 166 (335)
T 1dxh_A 112 EI---VEELAKFAGVPVFNGLT-DE--------------Y---HPTQMLADVLTMREHSDKPLHDISYAYLGDA--R-N- 166 (335)
T ss_dssp HH---HHHHHHHSSSCEEEEEC-SS--------------C---CHHHHHHHHHHHHHTCSSCGGGCEEEEESCC--S-S-
T ss_pred hH---HHHHHHhCCCCEEcCCC-CC--------------C---CcHHHHHHHHHHHHHcCCCcCCeEEEEecCC--c-c-
Confidence 33 34455666899999653 22 1 2245666664 4566 2577777542 2 3
Q ss_pred CCHHHHHHHHhhCCceEeEEE
Q 044527 192 NTIPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~ 212 (860)
..+..+...+...|.++....
T Consensus 167 ~va~Sl~~~~~~~G~~v~~~~ 187 (335)
T 1dxh_A 167 NMGNSLLLIGAKLGMDVRIAA 187 (335)
T ss_dssp HHHHHHHHHHHHTTCEEEEEC
T ss_pred chHHHHHHHHHHcCCEEEEEC
Confidence 578888889999999887643
No 307
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=36.47 E-value=70 Score=33.33 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCC---cEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCC---CeE
Q 044527 165 RGISDFISVFKW---KEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLD---TKV 238 (860)
Q Consensus 165 ~ai~~~l~~~~w---~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~---~~v 238 (860)
..+.++++.++. +++.+|++..-.. ..+.+.+++.|+++.....+. +++........++.+++.+ +|+
T Consensus 39 ~~l~~~l~~~g~~~~~~~liVtd~~~~~-----~~l~~~L~~~g~~~~~f~~v~-~~pt~~~v~~~~~~~~~~~~~~~D~ 112 (375)
T 3rf7_A 39 VQLDTVLEQERTDANDFVVFLVDDVHQH-----KPLAARVPNKAHDLVIYVNVD-DEPTTVQVDELTAQVKAFNTKLPVS 112 (375)
T ss_dssp GGHHHHHHTTCCSTTCCEEEEEEGGGTT-----SHHHHHSCCCTTSEEEEECCS-SCCBHHHHHHHHHHHHHHCSSCCSE
T ss_pred HHHHHHHHHhcccCCCeEEEEECchhhh-----hHHHHHHHhcCCeEEEEeCCC-CCCCHHHHHHHHHHHHHhCCCCCCE
Confidence 346677777653 7888888644221 246778887888765444444 5666778888888888776 999
Q ss_pred EEEEeCH
Q 044527 239 FVVHMTH 245 (860)
Q Consensus 239 iil~~~~ 245 (860)
||-.+.+
T Consensus 113 IIavGGG 119 (375)
T 3rf7_A 113 VVGLGGG 119 (375)
T ss_dssp EEEEESH
T ss_pred EEEeCCc
Confidence 9988875
No 308
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=36.05 E-value=56 Score=32.57 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=55.4
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC-HHHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT-HALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~-~~~~~~il~ 253 (860)
.+|+++..+. +|.. ...+.+.+.+++.|.++.... . .+.......++.+.+.++|.||+... .......++
T Consensus 3 ~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~----~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 76 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQ-TEWKFADKAGKDLGFEVIKIA----V-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVA 76 (306)
T ss_dssp EEEEEEESCTTSHHHH-HHHHHHHHHHHHHTEEEEEEE----C-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHH
T ss_pred eEEEEEeCCCCchHHH-HHHHHHHHHHHHcCCEEEEeC----C-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHH
Confidence 4788888763 3445 677888899999998886532 2 34455567788888889999998875 344455677
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (306)
T 8abp_A 77 KARGYDM 83 (306)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 8887774
No 309
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=35.82 E-value=1.4e+02 Score=29.06 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEec
Q 044527 99 ASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISL 138 (860)
Q Consensus 99 ~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~ 138 (860)
+..+.+ .++.+|+-+.+ +.++..+..+-+..++|+|..
T Consensus 55 ~~~L~~-~g~d~iviaCN-Ta~~~~~~~lr~~~~iPvigi 92 (255)
T 2jfz_A 55 LDFFKP-HEIELLIVACN-TASALALEEMQKYSKIPIVGV 92 (255)
T ss_dssp HHHHGG-GCCSCEEECCH-HHHHHTHHHHHHHCSSCEECS
T ss_pred HHHHHH-CCCCEEEEeCc-hhhHHHHHHHHHhCCCCEEee
Confidence 334444 48999887666 555445566666778998874
No 310
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=35.80 E-value=25 Score=33.88 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=44.1
Q ss_pred HHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCC
Q 044527 97 TTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKW 176 (860)
Q Consensus 97 ~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w 176 (860)
+.+..|.. .++.+|+-+.+ +... ....+-+..++|+++.. ++.++-+...+-
T Consensus 67 ~~~~~L~~-~g~~~iviaCN-Ta~~-~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~~ 118 (231)
T 3ojc_A 67 NAAISLKH-AGAEVIVVCTN-TMHK-VADDIEAACGLPLLHIA-------------------------DATAVQIKQQGI 118 (231)
T ss_dssp HHHHHHHH-HTCCEEEECSS-GGGG-GHHHHHHHHCSCBCCHH-------------------------HHHHHHHHHTTC
T ss_pred HHHHHHHh-cCCCEEEEeCC-chHH-HHHHHHHhCCCCEeccH-------------------------HHHHHHHHHcCC
Confidence 33444444 48999888776 4332 22445555578876542 122222223467
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhC-CceEe
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDN-DIDIA 209 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~-g~~i~ 209 (860)
++|+++......-. + .+++.+++. |+++.
T Consensus 119 ~rVgvLaT~~T~~s-~---~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 119 DKIGLLGTRYTMEQ-G---FYRGRLTEKHGIEVI 148 (231)
T ss_dssp CEEEEESCHHHHHS-T---TTHHHHHHTTCCEEE
T ss_pred CEEEEEcCHHHhhc-h---HHHHHHHhcCCCEEE
Confidence 89999977643222 2 234555555 87764
No 311
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=35.48 E-value=46 Score=32.92 Aligned_cols=79 Identities=9% Similarity=0.043 Sum_probs=52.9
Q ss_pred cEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHH
Q 044527 177 KEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~ 253 (860)
++|+++..+ ++|.. ...+.+.+.+++.|.++..... ..+...-...++.+.+.++|.||+.... +.....++
T Consensus 3 ~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 77 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFV-VLAETAKQRAEQLGYEATIFDS----QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVK 77 (290)
T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHH
T ss_pred eEEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 478888875 34555 6788888999999998765321 1334444566777778889998886643 33334566
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 78 ~~~~~~i 84 (290)
T 2fn9_A 78 RAKEAGI 84 (290)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6766663
No 312
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=34.82 E-value=24 Score=35.88 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=52.9
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH-HHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA-LASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~-~~~~il~ 253 (860)
++|+++..+. +|.. ...+.+.+.+++.|.++.... + ...+...-...++.+.+.++|.||+..... .....++
T Consensus 4 ~~Igvi~~~~~~~~~~-~~~~g~~~~~~~~g~~~~~~~--~-~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~ 79 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFT-SGGNGAQEAGKALGIDVTYDG--P-TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALK 79 (316)
T ss_dssp CEEEEECSSSSSHHHH-HHHHHHHHHHHHHTCEEEECC--C-SSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHH
T ss_pred CEEEEEeCCCCChHHH-HHHHHHHHHHHHhCCEEEEEC--C-CCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 5788887642 3444 567788888888898776421 1 123344455677788888999988866433 3355677
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 80 ~a~~~gi 86 (316)
T 1tjy_A 80 RAMQRGV 86 (316)
T ss_dssp HHHHTTC
T ss_pred HHHHCcC
Confidence 8877774
No 313
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*
Probab=34.63 E-value=3.8e+02 Score=27.15 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=79.8
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- +++|+= ... .+..
T Consensus 45 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~IviR~~~-~~~~ 113 (333)
T 1duv_G 45 KNIALIFEKDST---RTRCSFEVAAYDQGA------RVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGYG-QEIV 113 (333)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEECSSSSCBTTTBCHHHHHHHHTTT-CSEEEEECSC-HHHH
T ss_pred CEEEEEecCCCc---cHHHHHHHHHHHcCC------eEEEECCccccCcCCCcHHHHHHHHHHh-CCEEEEEcCC-chHH
Confidence 468888887765 688999999988532 3455544444433334455555555542 344432 223 3444
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh-CC----CcEEEEEEecCCCCCcCC
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV-FK----WKEVILIHEDNTWGNDNT 193 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~-~~----w~~v~ii~~~~~~g~~~~ 193 (860)
.. +++..++|+|.-+. +. . +-.+++++++ ++ +| ..+|+++.+. . . ..
T Consensus 114 ~~---lA~~~~vPVINa~~-~~--------------~---HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~--~-~-~v 168 (333)
T 1duv_G 114 ET---LAEYASVPVWNGLT-NE--------------F---HPTQLLADLLTMQEHLPGKAFNEMTLVYAGDA--R-N-NM 168 (333)
T ss_dssp HH---HHHHHSSCEEESCC-SS--------------C---CHHHHHHHHHHHHHHSTTCCGGGCEEEEESCT--T-S-HH
T ss_pred HH---HHHhCCCCeEcCCC-CC--------------C---CchHHHHHHHHHHHHhcCCCCCCcEEEEECCC--c-c-ch
Confidence 44 45555799999653 22 1 2245666664 55 66 2577777542 2 3 57
Q ss_pred HHHHHHHHhhCCceEeEEE
Q 044527 194 IPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~ 212 (860)
+..+...+...|.++....
T Consensus 169 a~Sl~~~~~~~G~~v~~~~ 187 (333)
T 1duv_G 169 GNSMLEAAALTGLDLRLVA 187 (333)
T ss_dssp HHHHHHHHHHHCCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 7888888888898887643
No 314
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=34.45 E-value=1.3e+02 Score=29.54 Aligned_cols=117 Identities=13% Similarity=0.032 Sum_probs=68.2
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhcc-CCeEEEEecCCChhHHH
Q 044527 44 HVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQN-VDLQAIICIGMTPTGAQ 122 (860)
Q Consensus 44 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~~s~~~~ 122 (860)
+||.+..........-..|++-|+++.+- +.... +.....+...+.+.+.+++.. +++.||+.... ..+.
T Consensus 128 ~I~~i~~~~~~~~~~R~~Gf~~al~~~g~-----~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--~~A~ 198 (289)
T 3k9c_A 128 NIAHIDGADAPGGADRRAGFLAAMDRHGL-----SASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAFND--RCAT 198 (289)
T ss_dssp SEEEECCTTSTTHHHHHHHHHHHHHHTTC-----GGGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEESSH--HHHH
T ss_pred cEEEEeCCCCccHHHHHHHHHHHHHHCCC-----CCCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEECCh--HHHH
Confidence 57877665544455667788888877431 12222 234556788888888888874 46899998654 4444
Q ss_pred HHHHhhcCCC------CcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHHh
Q 044527 123 ILADLGSRAK------IPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFIS 172 (860)
Q Consensus 123 ~~~~~~~~~~------ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l~ 172 (860)
.+...+.+.+ +.++++.......+.. .+..+..+.. .+++..++++.
T Consensus 199 g~~~al~~~g~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~---~~g~~a~~~l~ 252 (289)
T 3k9c_A 199 GVLDLLVRSGRDVPADISVVGYDDSRLARIPHVQMTTISQDAT---HMAEAAVDGAL 252 (289)
T ss_dssp HHHHHHHHTTCCTTTTCEEEEEECCTTTTCTTTCCEEEECCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCHHHHhcCCCCcceEecCHH---HHHHHHHHHHH
Confidence 4445555443 3367775332101111 3344455555 77777666653
No 315
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=33.79 E-value=48 Score=33.72 Aligned_cols=80 Identities=11% Similarity=-0.058 Sum_probs=51.3
Q ss_pred CCCcEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHH
Q 044527 174 FKWKEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHL 251 (860)
Q Consensus 174 ~~w~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~i 251 (860)
-.-..|+++..+ ++|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+...... ...
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~ 134 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFA-AITRGVDDIASMYKYNMILANS----DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKI 134 (332)
T ss_dssp -CCCEEEEEESCTTCHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHH
T ss_pred CCCCEEEEEeCCCCCcHHH-HHHHHHHHHHHHcCCEEEEEEC----CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHH
Confidence 344689999875 33545 6778888999999998765421 233444556677778889999988763211 123
Q ss_pred HHHHHHcC
Q 044527 252 FLNAKKLG 259 (860)
Q Consensus 252 l~~a~~~g 259 (860)
++.+.+.+
T Consensus 135 ~~~l~~~~ 142 (332)
T 2o20_A 135 RTSLKNSR 142 (332)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhCC
Confidence 44555555
No 316
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=33.59 E-value=33 Score=34.44 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=48.0
Q ss_pred eeeHHHHHHHHHh---C---CCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccccc--ceeec-cc-
Q 044527 487 GFCIDVFKAAIDT---L---TFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRS--VYVDF-TL- 556 (860)
Q Consensus 487 G~~~~l~~~la~~---l---~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~--~~~~f-s~- 556 (860)
.+..+++..+.++ . +. ++.+... +...++..|.+|++|+++..-....+.. ..+.+ ..
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v--~v~l~~~----------~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~ 100 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPF--KVAWYKS----------DTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSY 100 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---C--EEEEEEC----------CHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCE
T ss_pred HHHHHHHHHHHhhhcccCCCCe--EEEEEeC----------CHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceee
Confidence 4557899999998 7 54 5555553 6788999999999999875422111110 11112 24
Q ss_pred cccccceEEEEecCC
Q 044527 557 PYTDMGIGMIVPIDQ 571 (860)
Q Consensus 557 p~~~~~~~~lv~~~~ 571 (860)
++....+++++++..
T Consensus 101 ~l~~d~lvlv~~~~h 115 (294)
T 3cvg_A 101 YAFRDHFMLIGPPSN 115 (294)
T ss_dssp EEEEEEEEEEECTTC
T ss_pred eEEeccEEEEecCCC
Confidence 788888888888764
No 317
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=33.57 E-value=61 Score=30.49 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEE
Q 044527 164 ARGISDFISVFKWKEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVV 241 (860)
Q Consensus 164 ~~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil 241 (860)
...+.+++....-++|++|-.... -.. ...+.+++.+++.|.++..... . ..+..+....+.+ +|.|++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~~-~~~~s~~~a~~~lG~~v~~~~i-~--~~~~~~~~~~l~~-----ad~I~l 85 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEVT-FYVEAGKKALESLGLLVEELDI-A--TESLGEITTKLRK-----NDFIYV 85 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSCC-HHHHHHHHHHHHTTCEEEECCT-T--TSCHHHHHHHHHH-----SSEEEE
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCHH-HHHHHHHHHHHHcCCeEEEEEe-c--CCChHHHHHHHHh-----CCEEEE
Confidence 445566666666799999953321 112 3678899999999998665322 1 1344455455543 577777
Q ss_pred EeCHHHHHHHHHHHHHcCCcc-------CCeEEEecChhh
Q 044527 242 HMTHALASHLFLNAKKLGMMS-------KGYVWIATAATM 274 (860)
Q Consensus 242 ~~~~~~~~~il~~a~~~gl~~-------~~~~~i~~~~~~ 274 (860)
.+ .+...+++..++.|+.. .+..++.+....
T Consensus 86 ~G--G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 86 TG--GNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp CC--SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred CC--CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 55 23334555555555421 245666666544
No 318
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=33.07 E-value=64 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=42.7
Q ss_pred cEEEEEEecCC--CCC--cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe
Q 044527 177 KEVILIHEDNT--WGN--DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 177 ~~v~ii~~~~~--~g~--~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~ 243 (860)
-++++|...|+ .|+ +.....+.+.+++.|+++.....++ .+...+...+++..+. +|+||..+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~---Dd~~~I~~~l~~a~~~-~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM---DDLDEIGWAFRVALEV-SDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC---SCHHHHHHHHHHHHHH-CSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeC---CCHHHHHHHHHHHHhc-CCEEEEcC
Confidence 46778877664 233 1235667788888999888777666 5566777777666443 78888776
No 319
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=32.95 E-value=1.7e+02 Score=28.48 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=44.3
Q ss_pred CccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeecc--ccccccCceEEEeccCCcchHHHHHHHHHHhh
Q 044527 704 RLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAA--KYTTSTNGFGFVFQKGSPLVHDISRAIARLRE 781 (860)
Q Consensus 704 ~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 781 (860)
.....++....+..+..|.--+++-. .......... .+..+.. .. ....++++.+++.+....+...+..+.+
T Consensus 215 ~~~~~~~~~~~~~~v~~g~Gi~~lp~-~~~~~~~~~~--~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 289 (300)
T 3mz1_A 215 YTMAANESTTYLAAARAGLGVIQAPL-FMVREDLRNG--TMVPVLPDWQV--EPMPIYLVYPPNRHLSSRLRVFADWVVK 289 (300)
T ss_dssp EEEEESSHHHHHHHHHTTCCBEEEEH-HHHHHHHHHT--SEEECCTTCBC--CCEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred ceEEECCHHHHHHHHHhCCCEEeccH-HHHHHHHhCC--CeEEeCCCcCC--CCccEEEEEcCcccCcHHHHHHHHHHHH
Confidence 44567788889999999985454444 3343333322 2333322 23 4567788889887766666666665544
No 320
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=32.60 E-value=2.1e+02 Score=29.37 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=77.2
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccC-CeEEEEecCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNV-DLQAIICIGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aviGp~~~s~~~ 121 (860)
-.|+.+|...+. ..+.+|+.|+.++-.. .+.+...|.+-...+.+..+.+.++.- .+.++=.+ . .+.
T Consensus 67 k~va~lF~e~ST---RTR~SFE~A~~~LGg~------~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~-~-~~~- 134 (353)
T 3sds_A 67 KTVAMMFSKRST---RTRVSTEGAVVKMGGH------PMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVG-P-HSD- 134 (353)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTCE------EEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECS-S-HHH-
T ss_pred CEEEEEecCCch---hHHHHHHHHHHHcCCe------EEecCCccccccCCccHHHHHHHHHHhcCEEEEEeC-C-hHH-
Confidence 468889988775 6889999999885333 343322232211123333444444432 12222233 2 233
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhCC----------------CcEEEEE
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVFK----------------WKEVILI 182 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~~----------------w~~v~ii 182 (860)
+..+++..++|+|.-+.... +-.+++++++ +++| ..+|+++
T Consensus 135 --~~~lA~~s~vPVINag~d~~------------------HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~v 194 (353)
T 3sds_A 135 --IANLAKHSSVPVINALCDTF------------------HPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWV 194 (353)
T ss_dssp --HHHHHHHCSSCEEEEECSSC------------------CHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEE
T ss_pred --HHHHHhhCCCCEEECCCCCC------------------CcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEE
Confidence 44566777899998863221 2245666653 4555 3588887
Q ss_pred EecCCCCCcCCHHHHHHHHhhCCceEeEEE
Q 044527 183 HEDNTWGNDNTIPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 183 ~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~ 212 (860)
.+- . ..+..+...+...|.++....
T Consensus 195 GD~----~-nva~Sl~~~l~~lG~~v~~~~ 219 (353)
T 3sds_A 195 GDA----N-NVLFDLAIAATKMGVNVAVAT 219 (353)
T ss_dssp SCC----C-HHHHHHHHHHHHTTCEEEEEC
T ss_pred CCC----c-hHHHHHHHHHHHcCCEEEEEC
Confidence 642 3 577888888889998877643
No 321
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=32.42 E-value=50 Score=32.99 Aligned_cols=85 Identities=6% Similarity=-0.004 Sum_probs=52.6
Q ss_pred HHhhCCCcEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHH
Q 044527 170 FISVFKWKEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHAL 247 (860)
Q Consensus 170 ~l~~~~w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~ 247 (860)
-++.-+-+.|+++..+. +|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+......
T Consensus 9 ~L~~~~s~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 9 ALRHSRSGTIGLIVPDVNNAVFA-DMFSGVQMAASGHSTDVLLGQI----DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp --------CEEEEESCTTSTTHH-HHHHHHHHHHHHTTCCEEEEEC----CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHhhCCCCEEEEEeCCCcChHHH-HHHHHHHHHHHHCCCEEEEEeC----CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 34444556899998763 3445 6788888999999998876432 133444567788888999999998765433
Q ss_pred HHHHHHHHHHcCC
Q 044527 248 ASHLFLNAKKLGM 260 (860)
Q Consensus 248 ~~~il~~a~~~gl 260 (860)
....+..+.+ +.
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2215556665 63
No 322
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=32.32 E-value=35 Score=33.05 Aligned_cols=74 Identities=7% Similarity=-0.113 Sum_probs=49.9
Q ss_pred eeeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeeccccc---ceeeccccccccc
Q 044527 486 EGFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRS---VYVDFTLPYTDMG 562 (860)
Q Consensus 486 ~G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~---~~~~fs~p~~~~~ 562 (860)
.|+.-+|...+.++.|.++++.+. ....++..+.+|.+|+.+..=....+.. ....-..++....
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~------------gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~ 85 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAV------------GTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYND 85 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEE------------CHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSC
T ss_pred chHHHHHHHHHHHHhCCeEEEEEc------------CcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcce
Confidence 466678899999988865555544 4467899999999999875432222211 1111246788888
Q ss_pred eEEEEecCC
Q 044527 563 IGMIVPIDQ 571 (860)
Q Consensus 563 ~~~lv~~~~ 571 (860)
+++++|+..
T Consensus 86 LVLV~P~~~ 94 (242)
T 3kn3_A 86 FVIIGNPSF 94 (242)
T ss_dssp EEEEECTHH
T ss_pred EEEEEeCCC
Confidence 999998764
No 323
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=32.26 E-value=2.3e+02 Score=28.42 Aligned_cols=117 Identities=11% Similarity=-0.050 Sum_probs=68.5
Q ss_pred eEEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 42 EVHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 42 ~i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
.=+||++....+. ....-..|++-|+++.+ .+ ........+...+.+.+.+++...++.||+.... ..
T Consensus 174 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g-------~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd--~~ 242 (333)
T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIYG-------AE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASP--RL 242 (333)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHTT-------CE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCH--HH
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHCC-------CC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCH--HH
Confidence 3468888765443 34566778888887742 12 2222145678888888888887745889997544 45
Q ss_pred HHHHHHhhcCCC------CcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHHh
Q 044527 121 AQILADLGSRAK------IPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFIS 172 (860)
Q Consensus 121 ~~~~~~~~~~~~------ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l~ 172 (860)
+..+...+.+.+ +.++++.......+.. .+..+..+.. .+++..++++.
T Consensus 243 A~g~~~al~~~G~~vP~disvig~D~~~~~~~~~p~lttv~~~~~---~~g~~Av~~L~ 298 (333)
T 3jvd_A 243 MAGVMRAFTRLNVRVPHDVVIGGYDDPEWYSFVGAGITTFVPPHE---EMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHHHHTTCCTTTTCEEEEESCCGGGGGSTTSCEEEECCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEECChHHHHhcCCCceEEecCHH---HHHHHHHHHHH
Confidence 555555555544 3366665322101111 3344445555 77777777664
No 324
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=32.08 E-value=1.9e+02 Score=28.39 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=25.5
Q ss_pred hhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEec
Q 044527 102 LMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISL 138 (860)
Q Consensus 102 li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~ 138 (860)
.+.+.++.+|+=+.+ +.++.++..+-+..++|+|..
T Consensus 81 ~L~~~g~d~IVIACN-Ta~~~al~~lr~~~~iPvigi 116 (274)
T 3uhf_A 81 FFEQFQIDMLIIACN-TASAYALDALRAKAHFPVYGV 116 (274)
T ss_dssp HHTTSCCSEEEECCH-HHHHHSHHHHHHHCSSCEECS
T ss_pred HHHHCCCCEEEEeCC-ChhHHHHHHHHHhcCCCEEcC
Confidence 334559999987766 555555666777779999874
No 325
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=32.04 E-value=4e+02 Score=26.64 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=79.7
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEec-CCCCHHHHHHHHHHhhccCCeEEEE--ecCCChh
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRD-SQGDPFHALTTASNLMQNVDLQAII--CIGMTPT 119 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D-~~~~~~~a~~~~~~li~~~~v~avi--Gp~~~s~ 119 (860)
-.++.+|-..+. ..+.+|+.|+.+.-. ..+.+...+ +.-.-.+.+..+.+.++.- +++|+ .+.. +
T Consensus 45 k~l~~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~~s~~~kgEsl~DTarvls~~-~D~iviR~~~~--~ 112 (308)
T 1ml4_A 45 KILATLFFEPST---RTRLSFESAMHRLGG------AVIGFAEASTSSVKKGESLRDTIKTVEQY-CDVIVIRHPKE--G 112 (308)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEESCGGGSGGGGTCCHHHHHHHHTTT-CSEEEEEESST--T
T ss_pred CEEEEEecCCCc---hHHHHHHHHHHHhCC------eEEEeCCCccccccCCCCHHHHHHHHHHh-CcEEEEecCCh--h
Confidence 358888887764 688999999988632 345554444 2212223344444445442 33333 4433 3
Q ss_pred HHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhCC---CcEEEEEEecCCCCCcCC
Q 044527 120 GAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVFK---WKEVILIHEDNTWGNDNT 193 (860)
Q Consensus 120 ~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~~---w~~v~ii~~~~~~g~~~~ 193 (860)
.. ..+++..++|+|.-+..+. . +-.+++++++ +++| ..+|+++.+ ..+++ .
T Consensus 113 ~~---~~la~~~~vPVINag~g~~--------------~---HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD-~~~~r--v 169 (308)
T 1ml4_A 113 AA---RLAAEVAEVPVINAGDGSN--------------Q---HPTQTLLDLYTIKKEFGRIDGLKIGLLGD-LKYGR--T 169 (308)
T ss_dssp HH---HHHHHTCSSCEEEEEETTS--------------C---CHHHHHHHHHHHHHHSSCSSSEEEEEESC-TTTCH--H
T ss_pred HH---HHHHHhCCCCEEeCccCCc--------------c---CcHHHHHHHHHHHHHhCCCCCeEEEEeCC-CCcCc--h
Confidence 33 3445667899999765322 0 2245666664 4454 357888763 23444 7
Q ss_pred HHHHHHHHhhCCceEeEEE
Q 044527 194 IPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 194 ~~~l~~~~~~~g~~i~~~~ 212 (860)
+..+...+...|.++....
T Consensus 170 a~Sl~~~~~~~G~~v~~~~ 188 (308)
T 1ml4_A 170 VHSLAEALTFYDVELYLIS 188 (308)
T ss_dssp HHHHHHHGGGSCEEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEC
Confidence 7888888999998887643
No 326
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=32.03 E-value=67 Score=31.98 Aligned_cols=79 Identities=6% Similarity=0.085 Sum_probs=53.0
Q ss_pred cEEEEEEec--CCCCCcCCHHHHHHHHhhCCc-eEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH-HHHHHH
Q 044527 177 KEVILIHED--NTWGNDNTIPYLFDSLHDNDI-DIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA-LASHLF 252 (860)
Q Consensus 177 ~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~-~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~-~~~~il 252 (860)
++|+++..+ ++|.. ...+.+.+.+++.|. ++..... ..+.......++.+.+.++|.||+..... .....+
T Consensus 3 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~ 77 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMS-VVRKAIEQDAKAAPDVQLLMNDS----QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 77 (309)
T ss_dssp EEEEEEESCTTSHHHH-HHHHHHHHHHHTCTTEEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHH
T ss_pred cEEEEEeccCCcHHHH-HHHHHHHHHHHhcCCeEEEEecC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHH
Confidence 578888865 33555 677888899999996 7765321 23344455677777788999998876433 334567
Q ss_pred HHHHHcCC
Q 044527 253 LNAKKLGM 260 (860)
Q Consensus 253 ~~a~~~gl 260 (860)
+.+.+.+.
T Consensus 78 ~~~~~~~i 85 (309)
T 2fvy_A 78 EKARGQNV 85 (309)
T ss_dssp HHHHTTTC
T ss_pred HHHHHCCC
Confidence 77776663
No 327
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=31.99 E-value=82 Score=28.35 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCcEEEEEEecCC--CCC--cCCHHHHHHHHhhC-----CceEeEEEeccCCCCChHHHHHHHHhhhc-CCCeEEEEEeC
Q 044527 175 KWKEVILIHEDNT--WGN--DNTIPYLFDSLHDN-----DIDIARRTSISLASSTHDQIIEKLSMLKS-LDTKVFVVHMT 244 (860)
Q Consensus 175 ~w~~v~ii~~~~~--~g~--~~~~~~l~~~~~~~-----g~~i~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~viil~~~ 244 (860)
.-.+|++|...|+ -|+ +.....+.+.++++ |.++.....++ .+...+...+++..+ .++|+||..+.
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~---Dd~~~i~~~l~~~~~~~~~DlVittGG 80 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVP---DEVERIKDILQKWSDVDEMDLILTLGG 80 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEEC---SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcC---CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 3458888887654 222 01234567777777 99888776666 566778888887764 57899999874
No 328
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=31.97 E-value=1.6e+02 Score=25.29 Aligned_cols=85 Identities=7% Similarity=-0.003 Sum_probs=52.4
Q ss_pred EEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH----HHHHHHHH
Q 044527 178 EVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH----ALASHLFL 253 (860)
Q Consensus 178 ~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~----~~~~~il~ 253 (860)
+|.+.....+.-. -...-+...++..|+++.+--... .....++.+++.++++|.+++.. .....+++
T Consensus 5 ~vvla~~~~d~Hd-iG~~~v~~~l~~~G~~Vi~lG~~~-------p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 5 TIVLGVIGSDCHA-VGNKILDHAFTNAGFNVVNIGVLS-------PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp EEEEEEETTCCCC-HHHHHHHHHHHHTTCEEEEEEEEE-------CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred EEEEEeCCCchhH-HHHHHHHHHHHHCCCEEEECCCCC-------CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHH
Confidence 5555555444222 345667788899999998643321 23345666677799999998843 33455677
Q ss_pred HHHHcCCccCCeEEEecC
Q 044527 254 NAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 254 ~a~~~gl~~~~~~~i~~~ 271 (860)
+.++.+.. .-.+|+.+.
T Consensus 77 ~l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 77 KCDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHHTTCT-TCEEEEEES
T ss_pred HHHhcCCC-CCEEEEECC
Confidence 77777752 234555543
No 329
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=31.82 E-value=57 Score=32.44 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=41.9
Q ss_pred ccccchhHHHHHHHHhhccc-c-cc--cc----ccchhhhHHHHHHHHHHHHHHhhhccccccch
Q 044527 616 RAHQFGMIFWYSFSTLVFSQ-R-EK--LF----SNLSKFVVIVWVFVVLILSSSYTATLASMLTI 672 (860)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~-~-~~--~~----s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~ 672 (860)
...++.+++|..+.+++..| + .. |. .++.+.+..+..+.++++.+.++|-+.+.+..
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999876 3 22 32 23457777777778899999999998776643
No 330
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=31.80 E-value=3.8e+02 Score=28.07 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=57.9
Q ss_pred CcEEEEEEecCCCCC-cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH------HHH
Q 044527 176 WKEVILIHEDNTWGN-DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH------ALA 248 (860)
Q Consensus 176 w~~v~ii~~~~~~g~-~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~------~~~ 248 (860)
-++|.|+|. +.||. ...++.+.+.+.+.|++++...... ...++...++..+.+ ++.+++.+.. +..
T Consensus 265 ~~~v~I~Y~-S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d---~~~~~~s~i~~~i~~--~~~ivlGspT~~~~~~p~~ 338 (410)
T 4dik_A 265 KGKVTVIYD-SMYGFVENVMKKAIDSLKEKGFTPVVYKFSD---EERPAISEILKDIPD--SEALIFGVSTYEAEIHPLM 338 (410)
T ss_dssp TTEEEEEEE-CSSSHHHHHHHHHHHHHHHTTCEEEEEEECS---SCCCCHHHHHHHSTT--CSEEEEEECCTTSSSCHHH
T ss_pred ccceeeEEe-cccChHHHHHHHHHHHHHhcCCceEEEEecc---CCCCCHHHHHHHHHh--CCeEEEEeCCcCCcCCHHH
Confidence 358999986 45775 1347888899999999877654433 444566667776654 4566665532 455
Q ss_pred HHHHHHHHHcCCccCCeEEEecChhh
Q 044527 249 SHLFLNAKKLGMMSKGYVWIATAATM 274 (860)
Q Consensus 249 ~~il~~a~~~gl~~~~~~~i~~~~~~ 274 (860)
..++.........++....+.+-+|+
T Consensus 339 ~~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 339 RFTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp HHHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHHHHhcccCCCEEEEEECCCCC
Confidence 66777776666544333444443444
No 331
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=31.21 E-value=1.1e+02 Score=29.81 Aligned_cols=72 Identities=8% Similarity=-0.093 Sum_probs=48.8
Q ss_pred eeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccc---cceeeccccccccceE
Q 044527 488 FCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANR---SVYVDFTLPYTDMGIG 564 (860)
Q Consensus 488 ~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r---~~~~~fs~p~~~~~~~ 564 (860)
+..+++..+.++.. .+++.+... +....+.+|.+|++|+++....+..+. ...+ ...|+..+.++
T Consensus 17 ~l~~~~~~f~~~~P-~v~i~v~~~----------~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lv 84 (264)
T 4ecf_A 17 LVEAAGEQYTGEHL-GTFINVQGG----------GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGIT 84 (264)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEEE----------CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CceEEEEeC----------CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEE
Confidence 44677888888773 245554443 557889999999999998654443310 1112 36888999999
Q ss_pred EEEecCC
Q 044527 565 MIVPIDQ 571 (860)
Q Consensus 565 ~lv~~~~ 571 (860)
++++...
T Consensus 85 vvv~~~~ 91 (264)
T 4ecf_A 85 PIVNKKV 91 (264)
T ss_dssp EEECTTS
T ss_pred EEEcCCC
Confidence 9998764
No 332
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=31.04 E-value=1.2e+02 Score=29.31 Aligned_cols=93 Identities=9% Similarity=0.009 Sum_probs=64.1
Q ss_pred HHHHHHHhhCCCcEEEEEEecC------------CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhh
Q 044527 165 RGISDFISVFKWKEVILIHEDN------------TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLK 232 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~------------~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~ 232 (860)
....+.++..|.+.|=+..... .... ...+.+++.+++.|+++....... ......+...++..+
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~--~~~~~~~~~~i~~A~ 101 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDA-QTQKEIKELAASKGIKIVGTGVYV--AEKSSDWEKMFKFAK 101 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCH-HHHHHHHHHHHHTTCEEEEEEEEC--CSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCH-HHHHHHHHHHHHcCCeEEEEeccC--CccHHHHHHHHHHHH
Confidence 4456667778888888764321 1112 246889999999999987654432 234567788888888
Q ss_pred cCCCeEEEEEeCHHHHHHHHHHHHHcCC
Q 044527 233 SLDTKVFVVHMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 233 ~~~~~viil~~~~~~~~~il~~a~~~gl 260 (860)
.-+++.|++....+....+...|.+.|+
T Consensus 102 ~lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 102 AMDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HTTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred HcCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 8899988888766666666666666664
No 333
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=31.03 E-value=1.8e+02 Score=30.00 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=76.6
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC---CC-HHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ---GD-PFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~---~~-~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
-.|+.+|...+. ..+.+|+.|+.+.-.. .+.+...++. +. ....++....+. .+.++=++. .
T Consensus 72 K~va~lF~e~ST---RTR~SFE~A~~~LGg~------vi~l~~~~ss~~kgEsl~DTarvLs~~~---D~IviR~~~--~ 137 (365)
T 4amu_A 72 KNIAILFQKDST---RTRCAFEVAASDLGAG------VTYIGPSGSNMGKKESIEDTAKVLGRFY---DGIEFRGFA--Q 137 (365)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHHTCE------EEEECHHHHCCSSSSCHHHHHHHHHHHC---SEEEEECSC--H
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHhCCCE------EEEcCCccccCCCCcCHHHHHHHHHhhC---cEEEEecCC--h
Confidence 468889988775 6889999999986433 4444333332 22 223344444442 233333433 2
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCcC
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~~ 192 (860)
+. +..+++..++|+|.-++... .-.+++++++ ++ +...+|+++.+-- . .
T Consensus 138 ~~---~~~lA~~s~vPVINa~~~~~------------------HPtQaLaDl~Ti~E~~G~l~glkva~vGD~~---n-n 192 (365)
T 4amu_A 138 SD---VDALVKYSGVPVWNGLTDDE------------------HPTQIIADFMTMKEKFGNLKNKKIVFIGDYK---N-N 192 (365)
T ss_dssp HH---HHHHHHHHCSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSSCTTCEEEEESSTT---S-H
T ss_pred hH---HHHHHHhCCCCEEeCCCCCC------------------CcHHHHHHHHHHHHHhCCCCCCEEEEECCCC---c-c
Confidence 33 33455566899998763222 2235666654 33 3457888876421 2 4
Q ss_pred CHHHHHHHHhhCCceEeEE
Q 044527 193 TIPYLFDSLHDNDIDIARR 211 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~ 211 (860)
.+..+...+...|.++...
T Consensus 193 va~Sl~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 193 VGVSTMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHcCCEEEEE
Confidence 6788888888999887764
No 334
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=30.56 E-value=36 Score=29.66 Aligned_cols=89 Identities=11% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChH---HHHHHHHhhhcCCCeEEEEEeCHHHHHH
Q 044527 174 FKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHD---QIIEKLSMLKSLDTKVFVVHMTHALASH 250 (860)
Q Consensus 174 ~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~---~~~~~l~~i~~~~~~viil~~~~~~~~~ 250 (860)
+.-++|++|...+.-|. ....+.+.+.+.|.+|... . +....- ...+-+.++. ..+|+++++...+....
T Consensus 12 ~~p~~IavIGaS~~~g~--~G~~~~~~L~~~G~~V~~v---n-p~~~~i~G~~~~~s~~el~-~~vDlvii~vp~~~v~~ 84 (138)
T 1y81_A 12 KEFRKIALVGASKNPAK--YGNIILKDLLSKGFEVLPV---N-PNYDEIEGLKCYRSVRELP-KDVDVIVFVVPPKVGLQ 84 (138)
T ss_dssp --CCEEEEETCCSCTTS--HHHHHHHHHHHTTCEEEEE---C-TTCSEETTEECBSSGGGSC-TTCCEEEECSCHHHHHH
T ss_pred cCCCeEEEEeecCCCCC--HHHHHHHHHHHCCCEEEEe---C-CCCCeECCeeecCCHHHhC-CCCCEEEEEeCHHHHHH
Confidence 34567777765544343 3345555566666653221 1 111000 0000112222 25899999999989999
Q ss_pred HHHHHHHcCCccCCeEEEecCh
Q 044527 251 LFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 251 il~~a~~~gl~~~~~~~i~~~~ 272 (860)
+++++.+.| .+..|+.++.
T Consensus 85 v~~~~~~~g---~~~i~~~~~~ 103 (138)
T 1y81_A 85 VAKEAVEAG---FKKLWFQPGA 103 (138)
T ss_dssp HHHHHHHTT---CCEEEECTTS
T ss_pred HHHHHHHcC---CCEEEEcCcc
Confidence 999888877 3557876644
No 335
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=30.32 E-value=61 Score=33.02 Aligned_cols=81 Identities=6% Similarity=0.016 Sum_probs=51.2
Q ss_pred cEEEEEEec---CCCCCcCCHHHHHHHHhhCCceEeEEEeccCC-CCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHH
Q 044527 177 KEVILIHED---NTWGNDNTIPYLFDSLHDNDIDIARRTSISLA-SSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLF 252 (860)
Q Consensus 177 ~~v~ii~~~---~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~-~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il 252 (860)
..|+++..+ ++|.. ...+.+.+.+++.|.++.....-. . ..+...-...++.+.+.++|.||+..........+
T Consensus 44 ~~Igvi~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 121 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWV-RNIASFEKRLYKLNINYQLNQVFT-RPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFV 121 (342)
T ss_dssp EEEEEEECCCSSCCHHH-HHHHHHHHHHHHTTCCEEEEEEEC-CTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHH
T ss_pred eEEEEEecCCcccHHHH-HHHHHHHHHHHHcCCeEEEEecCC-CCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHH
Confidence 479999875 34544 577888889999998765532111 1 02334445667777788899999844333224456
Q ss_pred HHHHHcC
Q 044527 253 LNAKKLG 259 (860)
Q Consensus 253 ~~a~~~g 259 (860)
+.+.+.+
T Consensus 122 ~~~~~~~ 128 (342)
T 1jx6_A 122 EHVLDST 128 (342)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 6666666
No 336
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=30.30 E-value=2.4e+02 Score=27.95 Aligned_cols=93 Identities=9% Similarity=0.116 Sum_probs=59.5
Q ss_pred eEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-ceEeec---CCC-chhHHHHHHHHHHHhhCC-------
Q 044527 108 LQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-YSIQID---QDD-EASQSQARGISDFISVFK------- 175 (860)
Q Consensus 108 v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~---p~~-~~~~~~~~ai~~~l~~~~------- 175 (860)
+.-++||.. .+....++.++...++=++....... ..++ +|+|+. |.. ...+.+-+++..+.+.++
T Consensus 8 iLtv~g~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d-~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l~~ 85 (288)
T 3obi_A 8 VLTLSCPDR-AGIVSAVSTFLFENGQNILDAQQYND-TESGHFFMRVVFNAAAKVIPLASLRTGFGVIAAKFTMGWHMRD 85 (288)
T ss_dssp EEEEEEECC-TTHHHHHHHHHHHTTEEEEEEEEEEE-TTTTEEEEEEEEEESSCCCCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEECCCC-CCHHHHHHHHHHHCCCcEEeeeeeec-CCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHHcCCEEEeec
Confidence 566889999 99999999999998877666554333 3445 666662 221 101255566766666654
Q ss_pred ---CcEEEEEEecCCCCCcCCHHHHHHHHhhCCc
Q 044527 176 ---WKEVILIHEDNTWGNDNTIPYLFDSLHDNDI 206 (860)
Q Consensus 176 ---w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~ 206 (860)
-+|++++.+... +..+++-+..++..+
T Consensus 86 ~~~~~ri~vl~Sg~g----~nl~~ll~~~~~g~l 115 (288)
T 3obi_A 86 RETRRKVMLLVSQSD----HCLADILYRWRVGDL 115 (288)
T ss_dssp TTSCEEEEEEECSCC----HHHHHHHHHHHTTSS
T ss_pred cCCCcEEEEEEcCCC----CCHHHHHHHHHCCCC
Confidence 248898886553 455666666655433
No 337
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=30.27 E-value=42 Score=33.24 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCCcEEEEEEec-------CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHH
Q 044527 174 FKWKEVILIHED-------NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHA 246 (860)
Q Consensus 174 ~~w~~v~ii~~~-------~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~ 246 (860)
-+-++|+++..+ ++|.. ...+.+.+.+++.|..+.... ...+.......++.+.+.++|.||+.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~ 80 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFP-EVIRGISSFAHVEGYALYMST----GETEEEIFNGVVKMVQGRQIGGIILLYSRE 80 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHH-HHHHHHHHHHHHTTCEEEECC----CCSHHHHHHHHHHHHHTTCCCEEEESCCBT
T ss_pred CCCCEEEEEecCCccccccCHHHH-HHHHHHHHHHHHcCCEEEEEe----CCCCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 345689999876 33555 678888899999998876522 112333446677778888999998865432
Q ss_pred HHHHHHHHHHHcCC
Q 044527 247 LASHLFLNAKKLGM 260 (860)
Q Consensus 247 ~~~~il~~a~~~gl 260 (860)
. ...++.+.+.|.
T Consensus 81 ~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 81 N-DRIIQYLHEQNF 93 (292)
T ss_dssp T-CHHHHHHHHTTC
T ss_pred C-hHHHHHHHHCCC
Confidence 2 245666777764
No 338
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=29.90 E-value=4.3e+02 Score=26.37 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=79.5
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEe-cCCChhHH
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIIC-IGMTPTGA 121 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviG-p~~~s~~~ 121 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...++.-.-.+.+..+.+.++.- +++|+- ... .+.
T Consensus 40 k~l~~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~-~~~- 107 (307)
T 2i6u_A 40 RGVAVIFDKNST---RTRFSFELGIAQLGG------HAVVVDSGSTQLGRDETLQDTAKVLSRY-VDAIVWRTFG-QER- 107 (307)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTTC------EEEEEEGGGSGGGGTCCHHHHHHHHHHH-EEEEEEECSS-HHH-
T ss_pred CEEEEEecCCCc---chHHHHHHHHHHcCC------eEEEECCccccCCCCCCHHHHHHHHHHh-CCEEEEecCC-hhH-
Confidence 468888887664 688999999988532 4556655444322223333344444331 344432 222 333
Q ss_pred HHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhC---CCcEEEEEEecCCCCCcCCHH
Q 044527 122 QILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVF---KWKEVILIHEDNTWGNDNTIP 195 (860)
Q Consensus 122 ~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~---~w~~v~ii~~~~~~g~~~~~~ 195 (860)
+..+++..++|+|.-+.... +-.+++++++ +++ ...+|+++.+. .+ ..+.
T Consensus 108 --~~~lA~~~~vPVINa~~~~~------------------HPtQaLaDl~Ti~e~~g~l~gl~va~vGD~--~~--rva~ 163 (307)
T 2i6u_A 108 --LDAMASVATVPVINALSDEF------------------HPCQVLADLQTIAERKGALRGLRLSYFGDG--AN--NMAH 163 (307)
T ss_dssp --HHHHHHHCSSCEEESCCSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCT--TS--HHHH
T ss_pred --HHHHHhhCCCCEEcCCCCCc------------------CccHHHHHHHHHHHHhCCcCCeEEEEECCC--Cc--CcHH
Confidence 34455666899999653221 2245666664 333 44688888653 23 5788
Q ss_pred HHHHHHhhCCceEeEEE
Q 044527 196 YLFDSLHDNDIDIARRT 212 (860)
Q Consensus 196 ~l~~~~~~~g~~i~~~~ 212 (860)
.+...+...|.++....
T Consensus 164 Sl~~~~~~~g~~v~~~~ 180 (307)
T 2i6u_A 164 SLLLGGVTAGIHVTVAA 180 (307)
T ss_dssp HHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHCCCEEEEEC
Confidence 88899999999887643
No 339
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=29.89 E-value=63 Score=31.70 Aligned_cols=69 Identities=9% Similarity=0.045 Sum_probs=47.6
Q ss_pred HHhhCCCcEEEEEEecC--CCCCcCCHHHHHHHHhhCCce-EeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe
Q 044527 170 FISVFKWKEVILIHEDN--TWGNDNTIPYLFDSLHDNDID-IARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 170 ~l~~~~w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~-i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~ 243 (860)
-++.-.-+.|+++..+. +|.. ...+.+.+.+++.|.. +.... ...+...-...++.+.+.++|.||+..
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFYA-QIIDGIQEVIQKEGYTALISFS----TNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----SSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhcCCCCEEEEEeCCCCChhHH-HHHHHHHHHHHHCCCCEEEEEe----CCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 34455567899998763 3445 6788899999999998 65432 123445556677888889999999887
No 340
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=29.85 E-value=32 Score=34.36 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=55.3
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC-HHHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT-HALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~-~~~~~~il~ 253 (860)
.+|+++..+. +|.. ...+.+.+.+++.|.++.....-. ..+...-...++++.+.++|.||+... .+.....++
T Consensus 4 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWT-SLFQGAKKAAEELKVDLQILAPPG--ANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHH-HHHHHHHHHHHHHTCEEEEECCSS--SCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHH-HHHHHHHHHHHHhCcEEEEECCCC--cCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 4788887663 3555 678888899999999887643211 024455567788888889999888654 333355677
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 81 ~~~~~gi 87 (297)
T 3rot_A 81 RANKLNI 87 (297)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7777774
No 341
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.46 E-value=2.5e+02 Score=23.41 Aligned_cols=56 Identities=11% Similarity=-0.027 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC--HHHHHHHHHHHHH
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT--HALASHLFLNAKK 257 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~--~~~~~~il~~a~~ 257 (860)
...+.+...+++.|.++.. . .+ ....+..+++..+++|++... ..+...++++.++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~----~~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---A----DS---GGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E----SS---HHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEE---e----CC---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4667888888888877542 1 12 234555566778999999865 3356677888877
No 342
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=29.43 E-value=1.1e+02 Score=28.36 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=43.8
Q ss_pred cEEEEEEecCCC--CC--cCCHHHHHHHHhhCCce--EeEEEeccCCCCChHHHHHHHHhhhcC-CCeEEEEEeC
Q 044527 177 KEVILIHEDNTW--GN--DNTIPYLFDSLHDNDID--IARRTSISLASSTHDQIIEKLSMLKSL-DTKVFVVHMT 244 (860)
Q Consensus 177 ~~v~ii~~~~~~--g~--~~~~~~l~~~~~~~g~~--i~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~viil~~~ 244 (860)
-++++|...|+- |+ +.....+.+.+++.|.+ +.....++ .+...+...+++..+. ++|+|+..+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~---Dd~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP---DEQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE---SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC---CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 478888877652 21 13446788888888876 45555555 5567778888776654 7899988774
No 343
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=29.35 E-value=2.7e+02 Score=27.59 Aligned_cols=98 Identities=10% Similarity=0.145 Sum_probs=62.1
Q ss_pred eEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-ceEeecC---CCchhHHHHHHHHHHHhhCC--------
Q 044527 108 LQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-YSIQIDQ---DDEASQSQARGISDFISVFK-------- 175 (860)
Q Consensus 108 v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~p---~~~~~~~~~~ai~~~l~~~~-------- 175 (860)
+.-+.||.. .+....++..+...++=++....+.. ..++ +|+|+.- .....+.+-+++..+.+.++
T Consensus 10 vLtv~c~Dr-pGIVa~Vs~~La~~g~NI~d~~q~~d-~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~la~~l~m~~~l~~~ 87 (286)
T 3n0v_A 10 ILTADCPSM-LGTVDVVTRYLFEQRCYVTEHHSFDD-RQSGRFFIRVEFRQPDDFDEAGFRAGLAERSEAFGMAFELTAP 87 (286)
T ss_dssp EEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEE-TTTTEEEEEEEEECCSSCCHHHHHHHHHHHHGGGTCEEEEECT
T ss_pred EEEEEeCCC-CCHHHHHHHHHHHCCCCeeeeeeecc-CCCCeeEEEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEeecC
Confidence 677899999 99999999999998887776654433 3445 6777732 11111255566777766553
Q ss_pred --CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeEE
Q 044527 176 --WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIARR 211 (860)
Q Consensus 176 --w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~~ 211 (860)
-+|++++.+... +..+++-+..++. +.+|+..
T Consensus 88 ~~~~ri~vl~Sg~g----~~l~~ll~~~~~g~l~~~i~~V 123 (286)
T 3n0v_A 88 NHRPKVVIMVSKAD----HCLNDLLYRQRIGQLGMDVVAV 123 (286)
T ss_dssp TCCCEEEEEESSCC----HHHHHHHHHHHTTSSCCEEEEE
T ss_pred CCCcEEEEEEeCCC----CCHHHHHHHHHCCCCCcEEEEE
Confidence 248998886553 3555666655543 3455543
No 344
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=28.71 E-value=23 Score=33.85 Aligned_cols=36 Identities=6% Similarity=-0.097 Sum_probs=31.0
Q ss_pred hccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEecc
Q 044527 103 MQNVDLQAIICIGMTPTGAQILADLGSRAKIPIISLF 139 (860)
Q Consensus 103 i~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~ 139 (860)
+...+|..|+||.+ |+-......+++.+++|+||.+
T Consensus 26 ~~k~kiI~llGpPG-sGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 26 LAKAKVIFVLGGPG-SGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp TTSCEEEEEECCTT-CCHHHHHHHHHHHHCCEEECHH
T ss_pred ccCCcEEEEECCCC-CCHHHHHHHHHHHHCCceEcHH
Confidence 34457999999999 8888888889999999999875
No 345
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=28.44 E-value=98 Score=31.19 Aligned_cols=81 Identities=7% Similarity=0.169 Sum_probs=52.1
Q ss_pred CCcEEEEEEecC-CCCCcCCHHHHHHHHhhC-CceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHH-HHHH
Q 044527 175 KWKEVILIHEDN-TWGNDNTIPYLFDSLHDN-DIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHAL-ASHL 251 (860)
Q Consensus 175 ~w~~v~ii~~~~-~~g~~~~~~~l~~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~-~~~i 251 (860)
.-.+|+++..++ .|.. ...+.+.+.+++. |.++..... ..+.......++.+.+.++|.||+.....+ ....
T Consensus 5 ~~~~Igvi~~~~~~~~~-~~~~gi~~~a~~~~g~~l~i~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~ 79 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRH-KMNDEILREAMFYNGVSVEIRSA----GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPI 79 (325)
T ss_dssp -CCEEEEEESCCSHHHH-HHHHHHHHHHTTSSSCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHH
T ss_pred CCeEEEEEecCCCHHHH-HHHHHHHHHHHHcCCcEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHH
Confidence 346889988652 2333 4667788888888 988765431 233444556677777889999988765433 3456
Q ss_pred HHHHHHcCC
Q 044527 252 FLNAKKLGM 260 (860)
Q Consensus 252 l~~a~~~gl 260 (860)
++.+.+.+.
T Consensus 80 ~~~~~~~~i 88 (325)
T 2x7x_A 80 VEEAYQKGI 88 (325)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHCCC
Confidence 677766663
No 346
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=28.27 E-value=15 Score=21.40 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=14.8
Q ss_pred cccchhHHHHHHHHhhccc
Q 044527 617 AHQFGMIFWYSFSTLVFSQ 635 (860)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~ 635 (860)
...+..++|++|+.++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3467789999999998643
No 347
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=28.25 E-value=1.2e+02 Score=28.00 Aligned_cols=70 Identities=13% Similarity=0.013 Sum_probs=47.9
Q ss_pred hhCCCcEEEEEEecCC--CCC--cCCHHHHHHHHhh---CCceEeEEEeccCCCCChHHHHHHHHhhhc-CCCeEEEEEe
Q 044527 172 SVFKWKEVILIHEDNT--WGN--DNTIPYLFDSLHD---NDIDIARRTSISLASSTHDQIIEKLSMLKS-LDTKVFVVHM 243 (860)
Q Consensus 172 ~~~~w~~v~ii~~~~~--~g~--~~~~~~l~~~~~~---~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~viil~~ 243 (860)
..+.--++++|...|+ .|. +.....+.+.+++ .|.++.....++ .+...+...+++..+ .++|+||..+
T Consensus 10 ~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~---Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP---DEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEEC---SCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeC---CCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 3345568999988765 222 1234677888887 798888777666 566778888877654 4789999887
Q ss_pred C
Q 044527 244 T 244 (860)
Q Consensus 244 ~ 244 (860)
.
T Consensus 87 G 87 (189)
T 1jlj_A 87 G 87 (189)
T ss_dssp C
T ss_pred C
Confidence 4
No 348
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.17 E-value=2.2e+02 Score=25.33 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=56.1
Q ss_pred CcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC----HHHHHHH
Q 044527 176 WKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT----HALASHL 251 (860)
Q Consensus 176 w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~----~~~~~~i 251 (860)
-.+|.+.....+.-. -...-+...++..|++|..-.. .......++.+++.++++|.+.+. .+....+
T Consensus 18 ~~~vlla~~~gd~Hd-iG~~~va~~l~~~G~eVi~lG~-------~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~ 89 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHD-RGAKVVARALRDAGFEVVYTGL-------RQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRL 89 (161)
T ss_dssp SCEEEEEEESSSSCC-HHHHHHHHHHHHTTCEEECCCS-------BCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHH
T ss_pred CCEEEEEeCCCCccH-HHHHHHHHHHHHCCCEEEECCC-------CCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHH
Confidence 346666655544333 3567777888999999875221 123345667778889999999885 3566777
Q ss_pred HHHHHHcCCccCCeEEEecC
Q 044527 252 FLNAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 252 l~~a~~~gl~~~~~~~i~~~ 271 (860)
++..++.+.. .-.+|+.+.
T Consensus 90 i~~L~~~g~~-~i~v~vGG~ 108 (161)
T 2yxb_A 90 MAKLRELGAD-DIPVVLGGT 108 (161)
T ss_dssp HHHHHHTTCT-TSCEEEEEC
T ss_pred HHHHHhcCCC-CCEEEEeCC
Confidence 7777887752 234566554
No 349
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=28.13 E-value=2.7e+02 Score=27.28 Aligned_cols=112 Identities=13% Similarity=0.018 Sum_probs=61.6
Q ss_pred ceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 41 DEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
+.=+||++...+...+.....+++-|+++. + .++......+ .....+.+.++.. ++.||+.+.. ...
T Consensus 132 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~----g---i~~~~~~~~~---~~~~~~~~~~l~~--~~dai~~~~D-~~a 198 (295)
T 3lft_A 132 NVKTIGALYSSSEDNSKTQVEEFKAYAEKA----G---LTVETFAVPS---TNEIASTVTVMTS--KVDAIWVPID-NTI 198 (295)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHHT----T---CEEEEEEESS---GGGHHHHHHHHTT--TCSEEEECSC-HHH
T ss_pred CCcEEEEEeCCCCcchHHHHHHHHHHHHHc----C---CEEEEEecCC---HHHHHHHHHHHHh--cCCEEEECCc-hhH
Confidence 345788887765433455667788877663 2 2333222222 2344455556653 6888888766 433
Q ss_pred HH---HHHHhhcCCCCcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHH
Q 044527 121 AQ---ILADLGSRAKIPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFI 171 (860)
Q Consensus 121 ~~---~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l 171 (860)
.. ++...+...++|++++... .+.. -+.-...+.. .+++..++++
T Consensus 199 ~g~~~~l~~~~~~~~i~vig~d~~---~~~~~~Lttv~~~~~---~~G~~Aa~~l 247 (295)
T 3lft_A 199 ASGFPTVVSSNQSSKKPIYPSATA---MVEVGGLASVVIDQH---DLGVATGKMI 247 (295)
T ss_dssp HHTHHHHHHHTTTTCCCEEESSHH---HHTTTCCEEEECCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEeCCHH---HHhcCcEEEEecCHH---HHHHHHHHHH
Confidence 22 2334445678999988521 2222 2333445555 6776666655
No 350
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=28.05 E-value=35 Score=33.91 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=52.4
Q ss_pred HhhCCCcEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHH
Q 044527 171 ISVFKWKEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALA 248 (860)
Q Consensus 171 l~~~~w~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~ 248 (860)
++.-.-.+|+++..+ ++|.. ...+.+.+.+++.|.++..... ..+...-...++.+.+.++|.||+.......
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYT-RIANYLERQARQRGYQLLIACS----EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred hhcCCCcEEEEEeCCCcCcHHH-HHHHHHHHHHHHCCCEEEEEcC----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 444455689999875 23444 5778888899999998775321 1334445567777888899999887643222
Q ss_pred HHHHHHHHHcC
Q 044527 249 SHLFLNAKKLG 259 (860)
Q Consensus 249 ~~il~~a~~~g 259 (860)
..+++.+.+.+
T Consensus 90 ~~~~~~~~~~~ 100 (293)
T 2iks_A 90 HPFYQRWANDP 100 (293)
T ss_dssp CHHHHTTTTSS
T ss_pred HHHHHHHHhCC
Confidence 23445554444
No 351
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=27.97 E-value=72 Score=31.50 Aligned_cols=79 Identities=11% Similarity=0.008 Sum_probs=52.0
Q ss_pred CcEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHH
Q 044527 176 WKEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFL 253 (860)
Q Consensus 176 w~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~ 253 (860)
-+.|+++..+ ++|.. ...+.+.+.+++.|..+..... ..+.......++.+.+.++|.||+...... ...++
T Consensus 16 s~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 89 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYS-ELARGIEDIATMYKYNIILSNS----DQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVA 89 (289)
T ss_dssp CCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHH
T ss_pred CCeEEEEeCCCCCchHH-HHHHHHHHHHHHcCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHH
Confidence 3589999875 33444 6778888999999998765321 234444566777888889999988764222 23455
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 90 ~l~~~~i 96 (289)
T 2fep_A 90 EFKRSPV 96 (289)
T ss_dssp HHHHSSS
T ss_pred HHHhcCC
Confidence 5656663
No 352
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=27.89 E-value=2.2e+02 Score=28.87 Aligned_cols=87 Identities=9% Similarity=0.050 Sum_probs=54.4
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCC---cCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEE
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGN---DNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVH 242 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~---~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~ 242 (860)
.+...+..+-.+++.+|+.... |. ....+.+.+.+++.|+++.....- ...+......++...+.|.||+.
T Consensus 14 ~~~~~~~~m~m~~i~vI~NP~s-g~~~~~~~~~~i~~~L~~~g~~~~~~~t~-----~~~~a~~~~~~~~~~~~d~vvv~ 87 (337)
T 2qv7_A 14 GLVPRGSHMMRKRARIIYNPTS-GKEQFKRELPDALIKLEKAGYETSAYATE-----KIGDATLEAERAMHENYDVLIAA 87 (337)
T ss_dssp -----CCCSCCEEEEEEECTTS-TTSCHHHHHHHHHHHHHHTTEEEEEEECC-----STTHHHHHHHHHTTTTCSEEEEE
T ss_pred CccccccccccceEEEEECCCC-CCCchHHHHHHHHHHHHHcCCeEEEEEec-----CcchHHHHHHHHhhcCCCEEEEE
Confidence 3444444444578998886543 32 023457788888899887664431 12244455556666788999999
Q ss_pred eCHHHHHHHHHHHHHc
Q 044527 243 MTHALASHLFLNAKKL 258 (860)
Q Consensus 243 ~~~~~~~~il~~a~~~ 258 (860)
+...+...+++.+.+.
T Consensus 88 GGDGTv~~v~~~l~~~ 103 (337)
T 2qv7_A 88 GGDGTLNEVVNGIAEK 103 (337)
T ss_dssp ECHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHhC
Confidence 9999998888887443
No 353
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=27.82 E-value=2.9e+02 Score=27.37 Aligned_cols=94 Identities=7% Similarity=0.133 Sum_probs=61.0
Q ss_pred eEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-ceEeecCC-----CchhHHHHHHHHHHHhhCC------
Q 044527 108 LQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-YSIQIDQD-----DEASQSQARGISDFISVFK------ 175 (860)
Q Consensus 108 v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~p~-----~~~~~~~~~ai~~~l~~~~------ 175 (860)
+.-++||.. .+....++..+...++=++....... ..++ +|+|+.-. .. .+-+++..+.+.++
T Consensus 9 vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d-~~~g~Ffmr~~~~~~~~~~~---~L~~~f~~la~~~~m~~~l~ 83 (287)
T 3nrb_A 9 VLSLACQDA-PGIVSEVSTFLFNNGANIVEAEQFND-EDSSKFFMRVSVEIPVAGVN---DFNSAFGKVVEKYNAEWWFR 83 (287)
T ss_dssp EEEEEEECC-TTHHHHHHHHHHHTTCEEEEEEEEEE-TTTTEEEEEEEEECCC---C---HHHHHHHHHHGGGTCEEEEE
T ss_pred EEEEECCCC-CCHHHHHHHHHHHCCCCEEeeeeeec-CCCCeEEEEEEEEcCCCCHH---HHHHHHHHHHHHcCCeeEee
Confidence 567889999 99999999999998887776654433 4455 77777321 23 55566666666543
Q ss_pred ----CcEEEEEEecCCCCCcCCHHHHHHHHhhCC--ceEeE
Q 044527 176 ----WKEVILIHEDNTWGNDNTIPYLFDSLHDND--IDIAR 210 (860)
Q Consensus 176 ----w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g--~~i~~ 210 (860)
-+|++++.+... +..+++-+..++.. .+|+.
T Consensus 84 ~~~~~~ri~vl~Sg~g----~nl~~ll~~~~~g~l~~~i~~ 120 (287)
T 3nrb_A 84 PRTDRKKVVIMVSKFD----HCLGDLLYRHRLGELDMEVVG 120 (287)
T ss_dssp ETTCCCEEEEEECSCC----HHHHHHHHHHHHTSSCCEEEE
T ss_pred ccCCCcEEEEEEeCCC----cCHHHHHHHHHCCCCCeEEEE
Confidence 358999886553 35566666655443 34544
No 354
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=27.81 E-value=2.9e+02 Score=26.55 Aligned_cols=170 Identities=14% Similarity=0.070 Sum_probs=84.7
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC-------CCHHHHH----HHHHHhhccCCeEEE
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ-------GDPFHAL----TTASNLMQNVDLQAI 111 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~-------~~~~~a~----~~~~~li~~~~v~av 111 (860)
.+|.++-|.++. .+-..+.-+++.+. .++ .++.....+.. .+...+. +.+.++.. +++.+|
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~-~p~---~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~-~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVA-APG---TEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGRE-QGVDGH 73 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHC-CTT---EEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHH-HTCSEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhc-CCC---CEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHH-CCCCEE
Confidence 578899998874 34455555555543 222 56666554432 1222222 22333333 488887
Q ss_pred EecCCChhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCc
Q 044527 112 ICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGND 191 (860)
Q Consensus 112 iGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~ 191 (860)
+=+.. +... +..+-+..++|+|... .+ . .+.... + + ++|+++.....
T Consensus 74 viaCn-t~~~--l~~lr~~~~iPvigi~--e~------------------~-~~~a~~-~---~-~rigVlaT~~t---- 120 (245)
T 3qvl_A 74 VIASF-GDPG--LLAARELAQGPVIGIA--EA------------------A-MHMATM-V---A-TRFSIVTTLPR---- 120 (245)
T ss_dssp EEC-C-CCTT--HHHHHHHCSSCEEEHH--HH------------------H-HHHHHH-H---C-SCEEEEESCGG----
T ss_pred EEeCC-ChhH--HHHHHHHcCCCEECcc--HH------------------H-HHHHHH-c---C-CEEEEEEcchh----
Confidence 76555 3332 2334455689988653 11 1 111111 1 2 79999987542
Q ss_pred CCHHHHHHHHhhCCceEeE--EEeccC------CCCC--hHHHHHHHHh-hhcCCCeEEEEEeC-HHHHHHHHHH
Q 044527 192 NTIPYLFDSLHDNDIDIAR--RTSISL------ASST--HDQIIEKLSM-LKSLDTKVFVVHMT-HALASHLFLN 254 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~--~~~~~~------~~~~--~~~~~~~l~~-i~~~~~~viil~~~-~~~~~~il~~ 254 (860)
....+++.+++.|..... ...... .+.. ...+.....+ +++.++|+||+.|. .+.....+++
T Consensus 121 -~~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh~p~l~~~i~~ 194 (245)
T 3qvl_A 121 -TLIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGGMATLAQQLTR 194 (245)
T ss_dssp -GHHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGGGGGGHHHHHH
T ss_pred -HHHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHH
Confidence 235666777776653221 111110 0111 1223333333 34578999999885 3443434443
No 355
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=27.71 E-value=1.5e+02 Score=29.79 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEec
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGD 541 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~ 541 (860)
..+++.+-+.+|+++++ .+. .+-.-+..+|.+|++|+....
T Consensus 24 ~~i~~~~Le~~Gy~Ve~--~~~---------~~~~~~~~Al~~G~iDi~~e~ 64 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNK--PSE---------VDYNVGYTSLASGDATFTAVN 64 (309)
T ss_dssp HHHHHHHHHHTTCEECC--CEE---------CCHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHHHcCCCeEE--eec---------CchHHHHHHHhcCCceEEecc
Confidence 45666777788975443 222 144678889999999998643
No 356
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.49 E-value=44 Score=32.70 Aligned_cols=80 Identities=8% Similarity=0.082 Sum_probs=53.2
Q ss_pred EEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCC-CeEEEEEeC-HHHHHHHHH
Q 044527 178 EVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLD-TKVFVVHMT-HALASHLFL 253 (860)
Q Consensus 178 ~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~viil~~~-~~~~~~il~ 253 (860)
+|+++..+. +|.. ...+.+.+.+++.|.++.....-. ..+.......++.+.+.+ +|.||+... .......++
T Consensus 2 ~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~ 78 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWR-QVYLGAQKAADEAGVTLLHRSTKD--DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVA 78 (276)
T ss_dssp EEEEECSCSSSTHHH-HHHHHHHHHHHHHTCEEEECCCSS--TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEeCCCCChHHH-HHHHHHHHHHHHcCCEEEEECCCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHH
Confidence 678887653 3445 677888899999999887642111 123344556777777777 999988774 334556677
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 79 ~~~~~~i 85 (276)
T 3ksm_A 79 QYRARNI 85 (276)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 7777774
No 357
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=27.04 E-value=55 Score=32.88 Aligned_cols=79 Identities=6% Similarity=0.007 Sum_probs=51.7
Q ss_pred EEEEEEecCC-CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHHHH
Q 044527 178 EVILIHEDNT-WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFLNA 255 (860)
Q Consensus 178 ~v~ii~~~~~-~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~~a 255 (860)
+|+++..+.. |.. ...+.+.+.+++.|.++.... + ...+.......++++.+.++|.||+.... +.....++.+
T Consensus 3 ~Ig~i~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~--~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (313)
T 2h3h_A 3 TIGVIGKSVHPYWS-QVEQGVKAAGKALGVDTKFFV--P-QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKA 78 (313)
T ss_dssp EEEEECSCSSHHHH-HHHHHHHHHHHHHTCEEEEEC--C-SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred EEEEEeCCCcHHHH-HHHHHHHHHHHHcCCEEEEEC--C-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 6778765432 555 677888888999998876532 1 11334445566777777889999886543 3334566777
Q ss_pred HHcCC
Q 044527 256 KKLGM 260 (860)
Q Consensus 256 ~~~gl 260 (860)
.+.+.
T Consensus 79 ~~~~i 83 (313)
T 2h3h_A 79 LEMGI 83 (313)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77763
No 358
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=27.01 E-value=1.3e+02 Score=30.61 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=53.9
Q ss_pred CcEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHH
Q 044527 176 WKEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFL 253 (860)
Q Consensus 176 w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~ 253 (860)
-+.|+++..+. +|.. ...+.+.+.+++.|..+..... ..+.......++.+.+.++|.||+....... ..++
T Consensus 68 ~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~ 141 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFP-EVLTGINQVLEDTELQPVVGVT----DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARA 141 (344)
T ss_dssp CSEEEEEESCSSSSSHH-HHHHHHHHHHTSSSSEEEEEEC----TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHH
T ss_pred CCEEEEEeCCCCcHHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHH
Confidence 35799998653 3444 5778888999999998865331 2344555667788888899999987643322 4566
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 142 ~l~~~~i 148 (344)
T 3kjx_A 142 MLDAAGI 148 (344)
T ss_dssp HHHHCSS
T ss_pred HHHhCCC
Confidence 6666663
No 359
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=26.98 E-value=40 Score=35.48 Aligned_cols=65 Identities=15% Similarity=0.088 Sum_probs=47.4
Q ss_pred hhhHhhhcCCcEEEecCCcHHHhhhcCC------CCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHh
Q 044527 672 IQQIKLASMDNIGSQLGSVVPGALSNLN------FKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLS 738 (860)
Q Consensus 672 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~ 738 (860)
++.++++++ +|+..+.....+..... -...+++.|++..+++.+|.+|++||++.+..+...+..
T Consensus 28 i~sl~DLkg--vgv~~~~~~~~~~~~~~~i~~~~g~~~~~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 28 IENVTQLTS--VTAPTGTDNENIQKLLADIKSSQNTDLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIEL 98 (398)
T ss_dssp CCSGGGCSE--EEECTTTSHHHHHHHHHHHHHHSCCCCEEEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHHH
T ss_pred cCCHHHhcC--eeeECCCCHHHHHHHHHHHHHhhCCcceEEecCCHHHHHHHHHcCCCCEEEEchHHHHHHHh
Confidence 555556676 99998877765553211 111367899999999999999999999999877666544
No 360
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=26.61 E-value=2.6e+02 Score=26.99 Aligned_cols=78 Identities=5% Similarity=-0.049 Sum_probs=49.0
Q ss_pred EEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhcc--CCeEEEEecCCChhH
Q 044527 44 HVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQN--VDLQAIICIGMTPTG 120 (860)
Q Consensus 44 ~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~--~~v~aviGp~~~s~~ 120 (860)
+||++....+. ....-..|++-|+++.+ .++. +.....+...+.+.+.++++. +++.||+.... ..
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g-------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d--~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRFG-------IPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFND--EM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHTT-------CCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSH--HH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHcC-------CCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcCh--HH
Confidence 57777655432 24556778888887632 2333 233445677788888888875 47899997544 45
Q ss_pred HHHHHHhhcCCC
Q 044527 121 AQILADLGSRAK 132 (860)
Q Consensus 121 ~~~~~~~~~~~~ 132 (860)
+..+...+.+.+
T Consensus 189 a~g~~~al~~~g 200 (277)
T 3cs3_A 189 AIGVYKYVAETN 200 (277)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHHHcC
Confidence 555566666655
No 361
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=26.33 E-value=4.1e+02 Score=25.99 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=60.2
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe-
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM- 243 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~- 243 (860)
..+++-....|...+.++.+...+ . +..+.++..-+..++.|.....+. +.- ++.+.+..++|.|++.+
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f-~-Gs~~~L~~ir~~v~lPVl~Kdfi~----d~~----qi~ea~~~GAD~VlLi~a 151 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSF-Q-GAPEFLTAARQACSLPALRKDFLF----DPY----QVYEARSWGADCILIIMA 151 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTT-C-CCHHHHHHHHHTSSSCEEEESCCC----STH----HHHHHHHTTCSEEEEETT
T ss_pred HHHHHHHHHCCCCEEEEecccccc-C-CCHHHHHHHHHhcCCCEEECCccC----CHH----HHHHHHHcCCCEEEEccc
Confidence 456666777899999998865544 3 566666665556677765433222 211 46677889999999987
Q ss_pred --CHHHHHHHHHHHHHcCC
Q 044527 244 --THALASHLFLNAKKLGM 260 (860)
Q Consensus 244 --~~~~~~~il~~a~~~gl 260 (860)
...+...++..+.++||
T Consensus 152 ~L~~~~l~~l~~~a~~lGl 170 (272)
T 3tsm_A 152 SVDDDLAKELEDTAFALGM 170 (272)
T ss_dssp TSCHHHHHHHHHHHHHTTC
T ss_pred ccCHHHHHHHHHHHHHcCC
Confidence 45678899999999997
No 362
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}
Probab=26.19 E-value=4.6e+02 Score=26.84 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=76.5
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCC---C-CHHHHHHHHHHhhccCCeEEEEecCCCh
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQ---G-DPFHALTTASNLMQNVDLQAIICIGMTP 118 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~---~-~~~~a~~~~~~li~~~~v~aviGp~~~s 118 (860)
-.|+.+|-..+. ..+.+|+.|+.+.-. ..+.+...++. + .....++....+. .+.++=++. .
T Consensus 68 k~la~lF~e~ST---RTR~SFE~A~~~LGg------~vi~l~~~~ss~~kgEsl~DTarvLs~~~---D~IviR~~~--~ 133 (359)
T 2w37_A 68 KNIALLFEKSST---RTRSAFTTASIDLGA------HPEYLGQNDIQLGKKESTSDTAKVLGSMF---DGIEFRGFK--Q 133 (359)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEECTTTCCTTTSSCHHHHHHHHHHHC---SEEEEESSC--H
T ss_pred CEEEEEecCCCc---cHHHHHHHHHHHcCC------eEEEeCCccccCCCCcCHHHHHHHHHHhc---CEEEEecCC--h
Confidence 468888887664 688999999988532 34555433433 2 2223333333332 233333443 3
Q ss_pred hHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hhC---CCcEEEEEEecCCCCCcC
Q 044527 119 TGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SVF---KWKEVILIHEDNTWGNDN 192 (860)
Q Consensus 119 ~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~~---~w~~v~ii~~~~~~g~~~ 192 (860)
+.. ..+++..++|+|.-+.... .-.+++++++ +++ ...+|+++.+. . . .
T Consensus 134 ~~~---~~lA~~s~vPVINa~~~~~------------------HPtQaLaDl~Ti~E~~g~l~gl~va~vGD~--~-~-r 188 (359)
T 2w37_A 134 SDA---EILARDSGVPVWNGLTDEW------------------HPTQMLADFMTVKENFGKLQGLTLTFMGDG--R-N-N 188 (359)
T ss_dssp HHH---HHHHHHSSSCEEEEECSSC------------------CHHHHHHHHHHHHHHHSCCTTCEEEEESCT--T-S-H
T ss_pred HHH---HHHHHhCCCCEEcCCCCCC------------------CccHHHHHHHHHHHHhCCcCCeEEEEECCC--c-c-c
Confidence 333 3455666899999663221 2245666664 333 44688887652 2 3 5
Q ss_pred CHHHHHHHHhhCCceEeEEE
Q 044527 193 TIPYLFDSLHDNDIDIARRT 212 (860)
Q Consensus 193 ~~~~l~~~~~~~g~~i~~~~ 212 (860)
.+..+...+...|.++....
T Consensus 189 va~Sl~~~~~~lG~~v~~~~ 208 (359)
T 2w37_A 189 VANSLLVTGAILGVNIHIVA 208 (359)
T ss_dssp HHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHHHHHHHcCCEEEEEC
Confidence 77888888888898887643
No 363
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=25.98 E-value=1.8e+02 Score=30.28 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=60.4
Q ss_pred HHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEecc-C-CCCChHHHHHHHHhhhcCCC---eEEEEEeC
Q 044527 170 FISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSIS-L-ASSTHDQIIEKLSMLKSLDT---KVFVVHMT 244 (860)
Q Consensus 170 ~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~-~-~~~~~~~~~~~l~~i~~~~~---~viil~~~ 244 (860)
+++..+.+++.+|++...+. ...+.+.+.+++.|+++.... ++ . ++.+...+....+.+++.++ ++||..+.
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~--~~~~~v~~~L~~~g~~~~~~~-~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG 132 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAP--LYAPAIISLLDHIGCQHALLE-LPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG 132 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHH--HHHHHHHHHHHHHTCEEEEEE-ECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES
T ss_pred HHHhcCCCEEEEEECCcHHH--HHHHHHHHHHHHcCCeEEEEE-ECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC
Confidence 45556779999998766443 367788899999998765322 22 0 12345667777788877766 68877776
Q ss_pred H--HHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 245 H--ALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 245 ~--~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
+ -|...++......| ..++-|.|+.
T Consensus 133 Gsv~D~ak~~Aa~~~rg---ip~I~IPTTl 159 (390)
T 3okf_A 133 GVIGDLVGFAAACYQRG---VDFIQIPTTL 159 (390)
T ss_dssp HHHHHHHHHHHHHBTTC---CEEEEEECSH
T ss_pred cHHhhHHHHHHHHhcCC---CCEEEeCCCC
Confidence 4 34444443333344 3456666664
No 364
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=25.90 E-value=1.6e+02 Score=28.28 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=63.0
Q ss_pred HHHHHHHhhCCCcEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEE
Q 044527 165 RGISDFISVFKWKEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVH 242 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~ 242 (860)
+...+.++..|.+.|-+....-. ... ...+.+++.+++.|+++....... ......+...++..+.-+++.|++.
T Consensus 33 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~-~~~~~~~~~l~~~gl~i~~~~~~~--~~~~~~~~~~i~~A~~lGa~~v~~~ 109 (257)
T 3lmz_A 33 DTTLKTLERLDIHYLCIKDFHLPLNSTD-EQIRAFHDKCAAHKVTGYAVGPIY--MKSEEEIDRAFDYAKRVGVKLIVGV 109 (257)
T ss_dssp HHHHHHHHHTTCCEEEECTTTSCTTCCH-HHHHHHHHHHHHTTCEEEEEEEEE--ECSHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHhCCCEEEEecccCCCCCCH-HHHHHHHHHHHHcCCeEEEEeccc--cCCHHHHHHHHHHHHHhCCCEEEec
Confidence 45666777888888887643211 122 345789999999999987644332 1345667777777777788888887
Q ss_pred eCHHHHHHHHHHHHHcCC
Q 044527 243 MTHALASHLFLNAKKLGM 260 (860)
Q Consensus 243 ~~~~~~~~il~~a~~~gl 260 (860)
...+....+...|.+.|+
T Consensus 110 p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 110 PNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp ECGGGHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 666666677777777664
No 365
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=25.87 E-value=2.9e+02 Score=26.96 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=64.6
Q ss_pred EEEEEEEecCCc-chhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhcc----CCeEEEEecCCC
Q 044527 43 VHVGIILDMRSW-TGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQN----VDLQAIICIGMT 117 (860)
Q Consensus 43 i~IG~l~~~~~~-~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~----~~v~aviGp~~~ 117 (860)
=+||.+....+. ....-..|++-|+++-+ .++. +.....+...+.+.+.+++.. +++.||+...
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g-------~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~-- 200 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQFN-------LDYQ--IIETSNEREVILNYMQNLHTRLKDPNIKQAIISLD-- 200 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHTT-------CEEE--EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESS--
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHcC-------CCee--EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEECC--
Confidence 367877765443 24556778888887642 2333 223345667777777777764 2689999743
Q ss_pred hhHHHHHHHhhcCCC--Cc----EEecccCCCccccc----ceEeecCCCchhHHHHHHHHHHHh
Q 044527 118 PTGAQILADLGSRAK--IP----IISLFTTLPNSLTS----YSIQIDQDDEASQSQARGISDFIS 172 (860)
Q Consensus 118 s~~~~~~~~~~~~~~--ip----~Is~~a~~~~~ls~----~~~r~~p~~~~~~~~~~ai~~~l~ 172 (860)
...+..+...+.+.+ || ++++... .++. .+..+..+.. .+++..++++.
T Consensus 201 d~~A~g~~~al~~~g~~vP~di~vig~D~~---~~~~~~~p~lttv~~~~~---~~g~~a~~~l~ 259 (295)
T 3hcw_A 201 AMLHLAILSVLYELNIEIPKDVMTATFNDS---YLTEIASPPQTCIDIKPR---MLGQQAGSAIL 259 (295)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTEEEEEECCS---HHHHTSSSCCEEEECCHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCceEEEEeCCh---hHHhhCCCCeeEEEECHH---HHHHHHHHHHH
Confidence 355555555555554 34 5666422 2222 2334445555 77777776654
No 366
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=25.83 E-value=1.3e+02 Score=29.44 Aligned_cols=71 Identities=10% Similarity=-0.121 Sum_probs=46.3
Q ss_pred eHHHHHHHHHhC-CCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecc-ccccee-eccccccccceEE
Q 044527 489 CIDVFKAAIDTL-TFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITA-NRSVYV-DFTLPYTDMGIGM 565 (860)
Q Consensus 489 ~~~l~~~la~~l-~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~-~r~~~~-~fs~p~~~~~~~~ 565 (860)
...++..+.++. +. ++.+... +....+.++.+|++|+++....... +..+.- -...|+..+.+++
T Consensus 18 ~~~~~~~F~~~~P~v--~i~v~~~----------gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvv 85 (265)
T 4exl_A 18 VEVAADEFGTIHVGK--TVNVQGG----------GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLAL 85 (265)
T ss_dssp HHHHHHHHHHHSTTC--EEEEEEE----------CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCc--eEEEeeC----------CcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEE
Confidence 356777888777 44 4444443 4578899999999999886533221 111111 1367888999999
Q ss_pred EEecCC
Q 044527 566 IVPIDQ 571 (860)
Q Consensus 566 lv~~~~ 571 (860)
+++...
T Consensus 86 vv~~~~ 91 (265)
T 4exl_A 86 IVNKEV 91 (265)
T ss_dssp EECTTC
T ss_pred EECCCC
Confidence 998654
No 367
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=25.72 E-value=2.4e+02 Score=28.08 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=59.9
Q ss_pred eEEEEecCCChhHHHHHHHhhcCCCCcEEecccCCCccccc-ceEeec---C--C-CchhHHHHHHHHHHHhhCC-----
Q 044527 108 LQAIICIGMTPTGAQILADLGSRAKIPIISLFTTLPNSLTS-YSIQID---Q--D-DEASQSQARGISDFISVFK----- 175 (860)
Q Consensus 108 v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~---p--~-~~~~~~~~~ai~~~l~~~~----- 175 (860)
+.-+.||.. .+....++.++...++=++....+.. ..++ +|+|+. + . ....+.+-+++..+.+.++
T Consensus 12 vLtv~c~Dr-~GIVa~Vs~~La~~g~NI~d~~q~~d-~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~~m~~~l 89 (292)
T 3lou_A 12 VLTLSCPSA-AGQVAAVVGLLDRHRCYVDELTVFDD-DLSARFFVRCVFHATDDADALRVDALRREFEPIAERFRMQWAI 89 (292)
T ss_dssp EEEEEEESC-SCHHHHHHHHHHHTTEEEEEEEEEEE-TTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCC-CCHHHHHHHHHHHCCCCEEeeEEEec-CCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhcCcEEEe
Confidence 667889999 99999999999998877776554433 3445 777773 2 1 1101245556666655443
Q ss_pred -----CcEEEEEEecCCCCCcCCHHHHHHHHhhC--CceEeE
Q 044527 176 -----WKEVILIHEDNTWGNDNTIPYLFDSLHDN--DIDIAR 210 (860)
Q Consensus 176 -----w~~v~ii~~~~~~g~~~~~~~l~~~~~~~--g~~i~~ 210 (860)
-+|++++.+... +..+++-+..++. +.+|+.
T Consensus 90 ~~~~~~~ri~vl~Sg~g----~~l~~ll~~~~~g~l~~~i~~ 127 (292)
T 3lou_A 90 HDVAARPKVLIMVSKLE----HCLADLLFRWKMGELKMDIVG 127 (292)
T ss_dssp EETTSCCEEEEEECSCC----HHHHHHHHHHHHTSSCCEEEE
T ss_pred eccCCCCEEEEEEcCCC----cCHHHHHHHHHcCCCCcEEEE
Confidence 258999886553 3455566555443 335544
No 368
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=25.53 E-value=1.4e+02 Score=32.49 Aligned_cols=80 Identities=8% Similarity=0.011 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhHHHHHHHhhcCCCCcEEe
Q 044527 58 ITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTGAQILADLGSRAKIPIIS 137 (860)
Q Consensus 58 ~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~~~~~~~~~~~~~ip~Is 137 (860)
+...-.+--++.+|+++. +|.+ ++..-.-.++..+.+.+.++-.+++|++||-..+|-+.+......++..++|++-
T Consensus 26 ~v~~~~~~~~~~l~~~~~-l~~~--vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~~l~~PvL~ 102 (500)
T 4f2d_A 26 QVTQHAEHVVNALNTEAK-LPCK--LVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ 102 (500)
T ss_dssp HHHHHHHHHHHHHHHHTC-CSSE--EEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHHhccccC-CCeE--EEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHHhcCCCEEE
Confidence 344445666788898854 4443 3334444566666666555524568999998777555667777788889999998
Q ss_pred ccc
Q 044527 138 LFT 140 (860)
Q Consensus 138 ~~a 140 (860)
+..
T Consensus 103 ~~~ 105 (500)
T 4f2d_A 103 FHT 105 (500)
T ss_dssp EEC
T ss_pred EeC
Confidence 763
No 369
>3bvp_A INT, TP901-1 integrase; DNA recombinase, recombination; 2.10A {Lactococcus phage tp901-1}
Probab=25.04 E-value=98 Score=26.66 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEe
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVG 540 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~ 540 (860)
.+.++..+++.|+++.-.+...+..|.+..-..+..++..+..|++|..+.
T Consensus 27 ~~~l~~~a~~~g~~~~~~~~D~g~Sg~~~~Rp~l~~ll~~~~~g~~d~lvv 77 (138)
T 3bvp_A 27 IDRLTKYAEAMGWQVSDTYTDAGFSGAKLERPAMQRLINDIENKAFDTVLV 77 (138)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEETCCSSSSCCHHHHHHHHGGGGTSCSEEEE
T ss_pred HHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHhCCCCEEEE
Confidence 456778888889876545554433443333346889999999999997753
No 370
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=25.03 E-value=37 Score=34.04 Aligned_cols=86 Identities=10% Similarity=0.072 Sum_probs=53.9
Q ss_pred HHHhhCCCcEEEEEEec-------CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEE
Q 044527 169 DFISVFKWKEVILIHED-------NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVV 241 (860)
Q Consensus 169 ~~l~~~~w~~v~ii~~~-------~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil 241 (860)
+-++.-.-+.|+++..+ +.|.. ...+.+.+.+++.|..+.... ...+.......++.+.+.++|.||+
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNS-DVLNGINQACNVRGYSTRMTV----SENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHH-HHHHHHHHHHHHHTCEEEECC----CSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHH-HHHHHHHHHHHHCCCEEEEEe----CCCChHHHHHHHHHHHhCCCCEEEE
Confidence 33444566789999876 23444 577888899999998876532 1122334456777888899999988
Q ss_pred EeCHHHHHHHHHHHHHcCC
Q 044527 242 HMTHALASHLFLNAKKLGM 260 (860)
Q Consensus 242 ~~~~~~~~~il~~a~~~gl 260 (860)
....... ..++.+.+.+.
T Consensus 90 ~~~~~~~-~~~~~l~~~~i 107 (305)
T 3huu_A 90 LYSLKDD-PIEHLLNEFKV 107 (305)
T ss_dssp SSCBTTC-HHHHHHHHTTC
T ss_pred eCCcCCc-HHHHHHHHcCC
Confidence 7543222 45666666664
No 371
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=24.66 E-value=1.2e+02 Score=30.55 Aligned_cols=47 Identities=11% Similarity=0.099 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEece
Q 044527 490 IDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDT 542 (860)
Q Consensus 490 ~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~ 542 (860)
-.+.+.+.++.|-++++++.+.+.- |+...+++.+..|.+|++....
T Consensus 22 ~~fa~~v~e~s~G~i~i~v~~~g~L------g~~~~~~e~v~~G~id~~~~~~ 68 (312)
T 2xwv_A 22 EMFAKEVKEKSQGKIEISLYPSSQL------GDDRAMLKQLKDGSLDFTFAES 68 (312)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTTT------CCHHHHHHHHHHTSCCEEEECG
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCC------CCHHHHHHHHHCCCceEEEeCc
Confidence 3567788888887788888775433 3678999999999999987543
No 372
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=24.48 E-value=74 Score=32.23 Aligned_cols=79 Identities=10% Similarity=-0.006 Sum_probs=52.3
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCC--CeEEEEEeCHH-HHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLD--TKVFVVHMTHA-LASHL 251 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~viil~~~~~-~~~~i 251 (860)
.+|+++..+. +|.. ...+.+.+.+++.|.++..... ..+...-...++.+.+.+ +|.||+..... .....
T Consensus 6 ~~Igvi~~~~~~~~~~-~~~~gi~~~a~~~g~~l~~~~~----~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYT-AFNKGAQSFAKSVGLPYVPLTT----EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHH-HHHHHHHHHHHHHTCCEEEEEC----TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHH-HHHHHHHHHHHHcCCEEEEecC----CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 5789998653 3444 5778888889999988765431 133344456677777777 99988876543 33456
Q ss_pred HHHHHHcCC
Q 044527 252 FLNAKKLGM 260 (860)
Q Consensus 252 l~~a~~~gl 260 (860)
++.+.+.+.
T Consensus 81 ~~~~~~~~i 89 (332)
T 2rjo_A 81 VEACSKAGA 89 (332)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 777766663
No 373
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=24.27 E-value=1.3e+02 Score=27.36 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=43.8
Q ss_pred cEEEEEEecCC--CCC--cCCHHHHHHHHh---hCCceEeEEEeccCCCCChHHHHHHHHhhhcC-CCeEEEEEeC
Q 044527 177 KEVILIHEDNT--WGN--DNTIPYLFDSLH---DNDIDIARRTSISLASSTHDQIIEKLSMLKSL-DTKVFVVHMT 244 (860)
Q Consensus 177 ~~v~ii~~~~~--~g~--~~~~~~l~~~~~---~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~viil~~~ 244 (860)
.+|++|...|+ .|+ +.....+.+.++ +.|.++ ....++ .+...+...+++..+. ++|+||..+.
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~---Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIP---DERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEEC---SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcC---CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 47888887665 222 023456777666 889998 555555 5567788888877653 7899999874
No 374
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=24.14 E-value=80 Score=30.79 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=51.9
Q ss_pred CCcEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHH
Q 044527 175 KWKEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLF 252 (860)
Q Consensus 175 ~w~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il 252 (860)
+-+.|+++..+. +|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+....+ ..+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~~dgiIi~~~~~---~~~ 78 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFT-LIARGVEDVALAHGYQVLIGNS----DNDIKKAQGYLATFVSHNCTGMISTAFNE---NII 78 (277)
T ss_dssp ---CEEEEESCTTSHHHH-HHHHHHHHHHHHTTCCEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECGGGH---HHH
T ss_pred CCCEEEEEECCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEecCCh---HHH
Confidence 346799998763 3445 6788899999999998875332 23445556778888888999999977332 235
Q ss_pred H-HHHHcCC
Q 044527 253 L-NAKKLGM 260 (860)
Q Consensus 253 ~-~a~~~gl 260 (860)
+ .+.+.|+
T Consensus 79 ~~~l~~~~i 87 (277)
T 3e61_A 79 ENTLTDHHI 87 (277)
T ss_dssp HHHHHHC-C
T ss_pred HHHHHcCCC
Confidence 5 6666664
No 375
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=24.03 E-value=37 Score=35.56 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=57.5
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH 245 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~ 245 (860)
.+.++++.++ +++.+|++...+.. ...+.+.+.+++.|..+. .+. ......++....+.+++ ++|+||..+.+
T Consensus 32 ~l~~~l~~~g-~~~liVtd~~~~~~-~~~~~v~~~L~~~g~~~~---~~~-ge~~~~~v~~~~~~~~~-~~d~IIavGGG 104 (376)
T 1kq3_A 32 ILEEELSRFG-ERAFVVIDDFVDKN-VLGENFFSSFTKVRVNKQ---IFG-GECSDEEIERLSGLVEE-ETDVVVGIGGG 104 (376)
T ss_dssp GHHHHHHTTC-SEEEEEECHHHHHH-TTCTTGGGGCSSSEEEEE---ECC-SSCBHHHHHHHHTTCCT-TCCEEEEEESH
T ss_pred HHHHHHHHcC-CeEEEEECccHHhh-ccHHHHHHHHHHcCCeEE---EeC-CCCCHHHHHHHHHHHhc-CCCEEEEeCCc
Confidence 4566777778 99999987654333 335566777777774332 233 23344567777777777 99999988764
Q ss_pred --HHHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 246 --ALASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 246 --~~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
-|+..++. ...+ ..++-|.|..
T Consensus 105 sv~D~aK~iA--~~~~---~p~i~IPTTa 128 (376)
T 1kq3_A 105 KTLDTAKAVA--YKLK---KPVVIVPTIA 128 (376)
T ss_dssp HHHHHHHHHH--HHTT---CCEEEEESSC
T ss_pred HHHHHHHHHH--HhcC---CCEEEecCcc
Confidence 33333333 2233 3456666653
No 376
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=24.01 E-value=79 Score=31.07 Aligned_cols=79 Identities=9% Similarity=0.031 Sum_probs=50.9
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~ 253 (860)
+.|+++..+. +|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+.... +.....++
T Consensus 2 ~~Igvi~~~~~~~f~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFV-TLKNGAEEKAKELGYKIIVEDS----QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIK 76 (283)
T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHH
T ss_pred eEEEEEecCCCCHHHH-HHHHHHHHHHHhcCcEEEEecC----CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHH
Confidence 4688887652 3444 5778888888899988765431 1233344556777778889998886543 33234566
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.|.
T Consensus 77 ~~~~~~i 83 (283)
T 2ioy_A 77 EANSKNI 83 (283)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6777664
No 377
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=23.86 E-value=5.5e+02 Score=25.54 Aligned_cols=143 Identities=10% Similarity=0.076 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHhhccCCeEEE--EecCCChhHHHHHHHhhcCC-CCcEEecccCCCccccc--ceEeecCCCchhHHHHH
Q 044527 91 DPFHALTTASNLMQNVDLQAI--ICIGMTPTGAQILADLGSRA-KIPIISLFTTLPNSLTS--YSIQIDQDDEASQSQAR 165 (860)
Q Consensus 91 ~~~~a~~~~~~li~~~~v~av--iGp~~~s~~~~~~~~~~~~~-~ip~Is~~a~~~~~ls~--~~~r~~p~~~~~~~~~~ 165 (860)
-+..+...+.+.++. ++.++ +.+.-+......+...++.. ++.+|.+.+..- ++. ...-..|..
T Consensus 80 P~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~Gi--i~p~~~~~~~~~~~-------- 148 (305)
T 2fp4_A 80 PPPFAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGV--INPGECKIGIMPGH-------- 148 (305)
T ss_dssp CHHHHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSCEE--EETTTEEEESSCGG--------
T ss_pred CHHHHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCCeE--ecccccceeecccc--------
Confidence 345556666667665 66653 33322022234677888888 999888764321 111 111111211
Q ss_pred HHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCC-ChHHHHHHHHhhh-cCCCeEEEEEe
Q 044527 166 GISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASS-THDQIIEKLSMLK-SLDTKVFVVHM 243 (860)
Q Consensus 166 ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~l~~i~-~~~~~viil~~ 243 (860)
.+.--+|++|..... +...+.+.+.+.|+-+.....+- .+. ...++...|+.+. +...++|+++.
T Consensus 149 -------~~~~G~va~vSqSG~-----l~~~~~~~~~~~g~G~S~~vs~G-~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~ 215 (305)
T 2fp4_A 149 -------IHKKGRIGIVSRSGT-----LTYEAVHQTTQVGLGQSLCVGIG-GDPFNGTDFTDCLEIFLNDPATEGIILIG 215 (305)
T ss_dssp -------GCCEEEEEEEESCSH-----HHHHHHHHHHHTTCCEEEEEECC-SSSSCSCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred -------CCCCCCEEEEecchH-----HHHHHHHHHHhcCCCeeEEeccC-CCcCCCCCHHHHHHHHhcCCCCcEEEEEE
Confidence 123458999987553 44567778888887776654443 222 1345666676664 56889999988
Q ss_pred CH-----HHHHHHHHHHHH
Q 044527 244 TH-----ALASHLFLNAKK 257 (860)
Q Consensus 244 ~~-----~~~~~il~~a~~ 257 (860)
.. .++..|++.+.+
T Consensus 216 E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 216 EIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp ESSSSHHHHHHHHHHHHSC
T ss_pred ecCCchhhHHHHHHHHHHH
Confidence 64 568899988754
No 378
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=23.66 E-value=96 Score=31.71 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=47.3
Q ss_pred cccchhHHHHHHHHhhccc-cc-cc--cccchhhhHHHHHHHHHHHHHHhhhccccccchhh
Q 044527 617 AHQFGMIFWYSFSTLVFSQ-RE-KL--FSNLSKFVVIVWVFVVLILSSSYTATLASMLTIQQ 674 (860)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~-~~-~~--~s~~~R~l~~~w~~~~lil~~~Yta~L~s~lt~~~ 674 (860)
..++..++|+++.++...| +. .| .+..++++..+-.+.++++.+.-++-+.+-++-+.
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4578899999999999877 43 34 47889999999999999999999988877765443
No 379
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.65 E-value=3.2e+02 Score=22.78 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=39.1
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC--HHHHHHHHHHHHHc
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT--HALASHLFLNAKKL 258 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~--~~~~~~il~~a~~~ 258 (860)
...+.+...+++.|........ . +....+..+.+..+|+|++... ..+...++++.++.
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~~-----~---~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~ 76 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEFV-----D---NGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKP 76 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-----S---SHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCCCeeEEEE-----C---CHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4567888889888876332211 1 2334556667788999999765 34567778888774
No 380
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=23.36 E-value=1.8e+02 Score=27.12 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=51.6
Q ss_pred CCcEEEecCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCceE
Q 044527 680 MDNIGSQLGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGFG 759 (860)
Q Consensus 680 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 759 (860)
+++|+..--.....||.+.+.+..-+..+.+.|-+ -..|-.|+++.--.+..-+.++ +|+++... ..+...
T Consensus 108 ~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~GlAD~IvDivsTG~TLraN---gL~~ie~I---~~ssA~ 178 (206)
T 1ve4_A 108 IRRVATKYPNFTARLLKERGWAADVVELSGNIELA---AVTGLADAVVDVVQTGATLRAA---GLVEVEVL---AHSTAR 178 (206)
T ss_dssp CCEEEESCHHHHHHHHHHTTCCCEEEECSSCTHHH---HHTTSSSEEEEEESSSHHHHHT---TCEEEEEE---EEECEE
T ss_pred CCEEEECchHHHHHHHHHCCCcEEEEECCCceeec---cCCCCceEEEEeccCHHHHHHC---CCEEeEEE---EeeEEE
Confidence 55666665556678887666654344455555533 3345556655543333332232 67777554 455666
Q ss_pred EEeccCCc-c-hHHHHHHHHHHhh
Q 044527 760 FVFQKGSP-L-VHDISRAIARLRE 781 (860)
Q Consensus 760 ~~~~k~sp-l-~~~in~~i~~l~e 781 (860)
+..+|.+. . .+.++..+.+|+.
T Consensus 179 LI~n~~s~~~k~~~i~~l~~rl~~ 202 (206)
T 1ve4_A 179 LVVNRQALKLKRAVLKPLIQRLRE 202 (206)
T ss_dssp EEECHHHHHHTHHHHHHHHHHHHH
T ss_pred EEEcchHhHHHHHHHHHHHHHHHH
Confidence 77777652 2 3456666666653
No 381
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=23.30 E-value=1.2e+02 Score=27.28 Aligned_cols=79 Identities=8% Similarity=0.105 Sum_probs=54.5
Q ss_pred HHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe
Q 044527 164 ARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 164 ~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~ 243 (860)
++.+..+.++++.+++.++-+. .... .+.+.+.+.+.-.|+++... +..+....+++-+..+-++++++-
T Consensus 18 GQV~t~W~~~~~~~~IiVvnD~-vA~D-~~~k~~lk~a~P~gvk~~i~--------sve~ai~~~~~~~~~~~~v~ll~k 87 (165)
T 1vsq_C 18 GQVATRWTKETNVSRIIVVSDE-VAAD-TVRKTLLTQVAPPGVTAHVV--------DVAKMIRVYNNPKYAGERVMLLFT 87 (165)
T ss_dssp TTHHHHHHHHTTCSEEEEECHH-HHTC-HHHHHHHHHTCCTTCEEEEE--------CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred hheeeeeccccCCCEEEEeCcc-ccCC-HHHHHHHHhcCCCCCeEEEE--------EHHHHHHHHhccccCCcEEEEEEC
Confidence 5677788999999999887432 2222 55666666666668876542 244555666655557789999999
Q ss_pred CHHHHHHHH
Q 044527 244 THALASHLF 252 (860)
Q Consensus 244 ~~~~~~~il 252 (860)
++.++..++
T Consensus 88 ~p~d~~~lv 96 (165)
T 1vsq_C 88 NPTDVERLV 96 (165)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999987764
No 382
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=23.18 E-value=1.3e+02 Score=27.04 Aligned_cols=79 Identities=9% Similarity=0.130 Sum_probs=54.9
Q ss_pred HHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEe
Q 044527 164 ARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHM 243 (860)
Q Consensus 164 ~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~ 243 (860)
++.+..+.++++.+++.++-+. .... .+.+.+.+.+.-.|+++... +..+....+++-+..+-++++++-
T Consensus 15 GQV~t~W~k~~~~~~IiVvnD~-vA~D-~~~k~~lk~a~P~gvk~~i~--------sve~ai~~~~~~~~~~~~v~ll~k 84 (164)
T 1nrz_A 15 GQVTTVWSKVANAQRIIICNDD-VFND-EVRRTLLRQAAPPGMKVNVV--------SLEKAVAVYHNPQYQDETVFYLFT 84 (164)
T ss_dssp HHHHHHHHHHHTCSEEEEECHH-HHTC-HHHHHHHHHTCCTTCEEEEE--------CHHHHHHHHTCGGGTTCEEEEEES
T ss_pred hhheeeeccccCCCEEEEeCcc-ccCC-HHHHHHHHhcCCCCCeEEEE--------EHHHHHHHHhcccCCCceEEEEEC
Confidence 6777888999999999887432 2222 55666666666668776542 244555666665557789999999
Q ss_pred CHHHHHHHH
Q 044527 244 THALASHLF 252 (860)
Q Consensus 244 ~~~~~~~il 252 (860)
++.++..++
T Consensus 85 ~p~d~~~lv 93 (164)
T 1nrz_A 85 NPHDVLTMV 93 (164)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999987764
No 383
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=23.13 E-value=4.3e+02 Score=24.06 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=42.9
Q ss_pred cccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeec-c-ccccccCceEEEeccCCcchHHHHHHHHHHhh
Q 044527 706 KKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAA-A-KYTTSTNGFGFVFQKGSPLVHDISRAIARLRE 781 (860)
Q Consensus 706 ~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~k~spl~~~in~~i~~l~e 781 (860)
..+++.....+++..|---+++- ........+.. .+..+. + .. ....+.++.+++.+....+..++..+.+
T Consensus 140 ~~~~~~~~~~~~v~~G~Gia~lp-~~~~~~~l~~g--~L~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 212 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEKGLALLP-DFMAQFSILRG--DIQHIGNLKLH--SGYGYYVVIPNFRLTSRKVALFHDWLKD 212 (218)
T ss_dssp BCCSSHHHHHHHHHTTCCBEEEE-HHHHHHHHHTT--SEEEEEEEEEE--EEEEEEEECCTTCTTCHHHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCCCEEEec-HHHHHHHHHCC--CccccCccccC--CCceEEEEeccccCCCHHHHHHHHHHHH
Confidence 45678888999999997444444 43333323322 343332 2 12 3356788888888777777777666554
No 384
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=23.12 E-value=1.4e+02 Score=29.28 Aligned_cols=78 Identities=10% Similarity=0.008 Sum_probs=50.8
Q ss_pred CCcEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHH
Q 044527 175 KWKEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLF 252 (860)
Q Consensus 175 ~w~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il 252 (860)
.-++|+++..+ ++|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+....... ..+
T Consensus 7 ~~~~Igvi~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 80 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCA-AVVKGIEKTAEKNGYRILLCNT----ESDLARSRSCLTLLSGKMVDGVITMDALSEL-PEL 80 (285)
T ss_dssp CCCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHH
T ss_pred CCCEEEEEeCCCCCchHH-HHHHHHHHHHHHcCCEEEEEeC----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHH
Confidence 44689999875 33555 6778888999999998765421 1333444566777888899999887643222 334
Q ss_pred HHHHHcC
Q 044527 253 LNAKKLG 259 (860)
Q Consensus 253 ~~a~~~g 259 (860)
+.+. .+
T Consensus 81 ~~l~-~~ 86 (285)
T 3c3k_A 81 QNII-GA 86 (285)
T ss_dssp HHHH-TT
T ss_pred HHHh-cC
Confidence 4554 55
No 385
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.10 E-value=59 Score=32.14 Aligned_cols=80 Identities=6% Similarity=-0.047 Sum_probs=53.8
Q ss_pred CCCcEEEEEEecCC--CCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHH
Q 044527 174 FKWKEVILIHEDNT--WGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHL 251 (860)
Q Consensus 174 ~~w~~v~ii~~~~~--~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~i 251 (860)
-+-+.|+++..+.. |.. ...+.+.+.+++.|.++..... ..+...-...++.+.+.++|.||+..... ....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~ 79 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFA-EVASGVESEARHKGYSVLLANT----AEDIVREREAVGQFFERRVDGLILAPSEG-EHDY 79 (291)
T ss_dssp -CCCEEEEEESCTTSHHHH-HHHHHHHHHHHHTTCEEEEEEC----TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHH
T ss_pred CCCcEEEEEECCCcchHHH-HHHHHHHHHHHHCCCEEEEEeC----CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHH
Confidence 34568999987643 444 5788888999999998876432 23445556778888888999998876543 3334
Q ss_pred HHHHHHcC
Q 044527 252 FLNAKKLG 259 (860)
Q Consensus 252 l~~a~~~g 259 (860)
++.+.+.+
T Consensus 80 ~~~~~~~~ 87 (291)
T 3egc_A 80 LRTELPKT 87 (291)
T ss_dssp HHHSSCTT
T ss_pred HHHhhccC
Confidence 55555555
No 386
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=22.94 E-value=1e+02 Score=28.97 Aligned_cols=93 Identities=18% Similarity=0.102 Sum_probs=51.9
Q ss_pred cCCcEEEecCCcHHHhhhcCCCCCcCccccCCHHHHHHHHhcCCcEEEEcchHHHHHHHhccCccceeeccccccccCce
Q 044527 679 SMDNIGSQLGSVVPGALSNLNFKDSRLKKYNSAEEYANALSMGSISAIVDEIPYVRAFLSKYSAHYTTAAAKYTTSTNGF 758 (860)
Q Consensus 679 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 758 (860)
.+++|+..--.....||.+.+.+..-+..+.+.|-+ -..|-.|+++.--.+..-+.++ +|+++... ..+..
T Consensus 109 ~~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~a---p~~GlAD~IvDivsTG~TLr~N---gL~~ie~I---~~ssA 179 (208)
T 1z7m_E 109 RHKRIASKYPRVTKKYFAQKQEDIEIIKLEGSVELG---PVVGLADAIVDIVETGNTLSAN---GLEVIEKI---SDIST 179 (208)
T ss_dssp SCEEEEESCHHHHHHHHHHTTCCEEEEECSSCTTHH---HHTTSCSEEEEEESSSHHHHTT---TCEEEEEE---EECCE
T ss_pred CCCEEEECchHHHHHHHHHcCCceEEEECCCceeec---cCCCcccEEEEEeCChHHHHHC---CCEEeEEE---EeeEE
Confidence 566777765556678887666643333445555533 3345556655443333322222 67777554 45666
Q ss_pred EEEeccCCc-c-hHHHHHHHHHHh
Q 044527 759 GFVFQKGSP-L-VHDISRAIARLR 780 (860)
Q Consensus 759 ~~~~~k~sp-l-~~~in~~i~~l~ 780 (860)
.+..+|.+. . .+.++..+.+|+
T Consensus 180 ~LI~n~~s~~~k~~~i~~l~~rl~ 203 (208)
T 1z7m_E 180 RMIVNKSSFKFKKDKIIEMVERLE 203 (208)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEcchHhHHHHHHHHHHHHHHH
Confidence 777777763 2 245666666664
No 387
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=22.77 E-value=3.2e+02 Score=27.31 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=78.2
Q ss_pred EEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEE-ecCC---CC-HHHHHHHHHHhhccCCeEEEEecCCC
Q 044527 43 VHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHS-RDSQ---GD-PFHALTTASNLMQNVDLQAIICIGMT 117 (860)
Q Consensus 43 i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~-~D~~---~~-~~~a~~~~~~li~~~~v~aviGp~~~ 117 (860)
=.|+.+|...+. ..+.+|+.|+.+.-. ..+.+.. .++. +. ....++....+. .+.++=.+..
T Consensus 41 k~la~lF~e~ST---RTR~SFe~A~~~LGg------~~i~l~~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~~~- 107 (306)
T 4ekn_B 41 KILATVFYEPST---RTRLSFETAMKRLGG------EVITMTDLKSSSVAKGESLIDTIRVISGYA---DIIVLRHPSE- 107 (306)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHTTC------EEEEECCCTTTTSSSSCCHHHHHHHHHHHC---SEEEEECSST-
T ss_pred ceEEEEEcCCCh---hHHhhHHHHHHHcCC------EEEEcCCcccccCCCCCCHHHHHHHHHHhC---cEEEEEcCCh-
Confidence 458889988764 688999999988532 3455543 3333 22 223344333432 2444434443
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHH---hh---CCCcEEEEEEecCCCCCc
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFI---SV---FKWKEVILIHEDNTWGND 191 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l---~~---~~w~~v~ii~~~~~~g~~ 191 (860)
+... .+++..++|+|.-+.++. . +-.+++++++ ++ +...+|+++. |..+++
T Consensus 108 -~~~~---~lA~~~~vPVINag~g~~--------------~---HPtQ~LaDl~Ti~e~~g~l~glkva~vG-D~~~~r- 164 (306)
T 4ekn_B 108 -GAAR---LASEYSQVPIINAGDGSN--------------Q---HPTQTLLDLYTIMREIGRIDGIKIAFVG-DLKYGR- 164 (306)
T ss_dssp -THHH---HHHHHCSSCEEESCSSSS--------------C---CHHHHHHHHHHHHHHHSCSTTCEEEEES-CTTTCH-
T ss_pred -HHHH---HHHHhCCCCEEeCCCCCC--------------c---CcHHHHHHHHHHHHHhCCcCCCEEEEEc-CCCCCc-
Confidence 3333 345566899999864322 1 2245666654 33 4567888886 333454
Q ss_pred CCHHHHHHHHhhC-CceEeEE
Q 044527 192 NTIPYLFDSLHDN-DIDIARR 211 (860)
Q Consensus 192 ~~~~~l~~~~~~~-g~~i~~~ 211 (860)
.+..+...+... |.++...
T Consensus 165 -va~Sl~~~~~~~~G~~v~~~ 184 (306)
T 4ekn_B 165 -TVHSLVYALSLFENVEMYFV 184 (306)
T ss_dssp -HHHHHHHHHHTSSSCEEEEE
T ss_pred -HHHHHHHHHHhcCCCEEEEE
Confidence 778888888888 9887764
No 388
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=22.42 E-value=94 Score=30.24 Aligned_cols=79 Identities=9% Similarity=0.050 Sum_probs=51.3
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCH-HHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTH-ALASHLFL 253 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~-~~~~~il~ 253 (860)
+.|+++..+. +|.. ...+.+.+.+++.|.++..... ..+...-...++.+.+.++|.||+.... +.....++
T Consensus 2 ~~Igvi~~~~~~~f~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 76 (271)
T 2dri_A 2 DTIALVVSTLNNPFFV-SLKDGAQKEADKLGYNLVVLDS----QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVK 76 (271)
T ss_dssp CEEEEEESCSSSHHHH-HHHHHHHHHHHHHTCEEEEEEC----TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHH
T ss_pred cEEEEEecCCCCHHHH-HHHHHHHHHHHHcCcEEEEeCC----CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHH
Confidence 5788887653 3444 5778888889999988765331 1233344556777788899999886543 22234566
Q ss_pred HHHHcCC
Q 044527 254 NAKKLGM 260 (860)
Q Consensus 254 ~a~~~gl 260 (860)
.+.+.+.
T Consensus 77 ~~~~~~i 83 (271)
T 2dri_A 77 MANQANI 83 (271)
T ss_dssp HHHHTTC
T ss_pred HHHHCCC
Confidence 6776663
No 389
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.20 E-value=53 Score=32.64 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=50.8
Q ss_pred CCcEEEEEEe----c--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHH
Q 044527 175 KWKEVILIHE----D--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALA 248 (860)
Q Consensus 175 ~w~~v~ii~~----~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~ 248 (860)
.-+.|+++.. + +.|.. ...+.+.+.+++.|..+..... . . .......++.+.+.++|.||+.......
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~---~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~ 78 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFL-EMISWIGIELGKRGLDLLLIPD-E---P-GEKYQSLIHLVETRRVDALIVAHTQPED 78 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHH-HHHHHHHHHHHHTTCEEEEEEE-C---T-TCCCHHHHHHHHHTCCSEEEECSCCSSC
T ss_pred ccceEEEEecCCCccccChhHH-HHHHHHHHHHHHCCCEEEEEeC-C---C-hhhHHHHHHHHHcCCCCEEEEeCCCCCh
Confidence 3468999987 2 33444 5788888999999988876443 1 1 2223445666677788998887653322
Q ss_pred HHHHHHHHHcCC
Q 044527 249 SHLFLNAKKLGM 260 (860)
Q Consensus 249 ~~il~~a~~~gl 260 (860)
..++.+.+.++
T Consensus 79 -~~~~~l~~~~i 89 (294)
T 3qk7_A 79 -FRLQYLQKQNF 89 (294)
T ss_dssp -HHHHHHHHTTC
T ss_pred -HHHHHHHhCCC
Confidence 45666666664
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.12 E-value=38 Score=31.90 Aligned_cols=31 Identities=10% Similarity=-0.100 Sum_probs=27.3
Q ss_pred eEEEEecCCChhHHHHHHHhhcCCCCcEEecc
Q 044527 108 LQAIICIGMTPTGAQILADLGSRAKIPIISLF 139 (860)
Q Consensus 108 v~aviGp~~~s~~~~~~~~~~~~~~ip~Is~~ 139 (860)
+..++||.+ |+-......+++.+++|+||.+
T Consensus 2 ~Iil~GpPG-sGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPG-AGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTT-SSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCC-CCHHHHHHHHHHHHCCeEEcHH
Confidence 457899999 8888888999999999999976
No 391
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.79 E-value=3e+02 Score=27.03 Aligned_cols=112 Identities=11% Similarity=0.106 Sum_probs=61.8
Q ss_pred ceEEEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhccCCeEEEEecCCChhH
Q 044527 41 DEVHVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQNVDLQAIICIGMTPTG 120 (860)
Q Consensus 41 ~~i~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aviGp~~~s~~ 120 (860)
+.=+||++...+...+.....+++-|+++. + .++...... +.....+.+.++.. ++.||+.+.. ...
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~----g---i~~~~~~~~---~~~~~~~~~~~l~~--~~dai~~~~D-~~a 205 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKH----G---IKLVEATAL---KSADVQSATQAIAE--KSDVIYALID-NTV 205 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHT----T---CEEEEEECS---SGGGHHHHHHHHGG--GCSEEEECSC-HHH
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHHc----C---CEEEEEecC---ChHHHHHHHHHHhc--cCCEEEECCc-HhH
Confidence 344788887654433556667888777763 2 233322222 23445556666653 6888888766 432
Q ss_pred H---HHHHHhhcCCCCcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHH
Q 044527 121 A---QILADLGSRAKIPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFI 171 (860)
Q Consensus 121 ~---~~~~~~~~~~~ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l 171 (860)
. .++...+...++|++++... .+.. -+.-+..+.. .+++..++++
T Consensus 206 ~g~~~~l~~~~~~~~i~vig~d~~---~~~~~~Lttv~~~~~---~~G~~Aa~~l 254 (302)
T 2qh8_A 206 ASAIEGMIVAANQAKTPVFGAATS---YVERGAIASLGFDYY---QIGVQTADYV 254 (302)
T ss_dssp HTTHHHHHHHHHHTTCCEEESSHH---HHHTTCSEEEECCHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEECCHH---HHhCCcEEEEeCCHH---HHHHHHHHHH
Confidence 2 22334444578999987521 2222 2233345555 6776666655
No 392
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.77 E-value=85 Score=30.54 Aligned_cols=77 Identities=12% Similarity=0.006 Sum_probs=50.4
Q ss_pred cEEEEEEecC--CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHHHH
Q 044527 177 KEVILIHEDN--TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLFLN 254 (860)
Q Consensus 177 ~~v~ii~~~~--~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il~~ 254 (860)
+.|+++..+. +|.. ...+.+.+.+++.|.++..... ..+...-...++.+...++|.||+...... ...++.
T Consensus 4 ~~Ig~i~~~~~~~~~~-~~~~gi~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 77 (275)
T 3d8u_A 4 YSIALIIPSLFEKACA-HFLPSFQQALNKAGYQLLLGYS----DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQL 77 (275)
T ss_dssp CEEEEEESCSSCHHHH-HHHHHHHHHHHHTSCEECCEEC----TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHH
T ss_pred eEEEEEeCCCccccHH-HHHHHHHHHHHHCCCEEEEEcC----CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHH
Confidence 4788988652 3444 5778888999999988765321 233444556778888889998888764322 234555
Q ss_pred HHHcC
Q 044527 255 AKKLG 259 (860)
Q Consensus 255 a~~~g 259 (860)
+.+.+
T Consensus 78 l~~~~ 82 (275)
T 3d8u_A 78 LEASN 82 (275)
T ss_dssp HHHHT
T ss_pred HHhCC
Confidence 66555
No 393
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=21.71 E-value=3.3e+02 Score=22.48 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=42.8
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC--HHHHHHHHHH
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT--HALASHLFLN 254 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~--~~~~~~il~~ 254 (860)
.+|.++ +++. ...+.+...+++.|.++... .+ ....+..+++..+|+|++... ..+...++++
T Consensus 7 ~~iLiv-dd~~----~~~~~l~~~l~~~g~~v~~~-------~~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (140)
T 3grc_A 7 PRILIC-EDDP----DIARLLNLMLEKGGFDSDMV-------HS---AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRA 71 (140)
T ss_dssp SEEEEE-CSCH----HHHHHHHHHHHHTTCEEEEE-------CS---HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHH
T ss_pred CCEEEE-cCCH----HHHHHHHHHHHHCCCeEEEE-------CC---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 455544 4443 45677888888888875331 12 234555566778999999754 4456677777
Q ss_pred HHHc
Q 044527 255 AKKL 258 (860)
Q Consensus 255 a~~~ 258 (860)
.++.
T Consensus 72 l~~~ 75 (140)
T 3grc_A 72 LRRD 75 (140)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 7763
No 394
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=21.67 E-value=93 Score=31.47 Aligned_cols=79 Identities=15% Similarity=0.043 Sum_probs=50.2
Q ss_pred CCcEEEEEEec--CCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHHHHH
Q 044527 175 KWKEVILIHED--NTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALASHLF 252 (860)
Q Consensus 175 ~w~~v~ii~~~--~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~~il 252 (860)
.-..|+++..+ ++|.. ...+.+.+.+++.|..+..... ..+...-...++.+.+.++|.||+....... ..+
T Consensus 59 ~~~~Ig~i~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~ 132 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYA-ELARGIEDIATMYKYNIILSNS----DQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHV 132 (332)
T ss_dssp -CCEEEEEEC--CCSHHH-HHHHHHHHHHHHHTCEEEEEEC----CSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHH
T ss_pred CCCEEEEEeCCCCCcHHH-HHHHHHHHHHHHcCCEEEEEeC----CCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHH
Confidence 44689999865 44555 6778888899999988765321 1223344566778888899988886643222 345
Q ss_pred HHHHHcC
Q 044527 253 LNAKKLG 259 (860)
Q Consensus 253 ~~a~~~g 259 (860)
+.+.+.+
T Consensus 133 ~~l~~~~ 139 (332)
T 2hsg_A 133 EELKKSP 139 (332)
T ss_dssp HHHTTSS
T ss_pred HHHHhCC
Confidence 5555555
No 395
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=21.55 E-value=1.4e+02 Score=21.89 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044527 826 TGISSTLALVIFLVTSIY 843 (860)
Q Consensus 826 l~~g~~ls~~vf~~E~~~ 843 (860)
.++|-++++++|.+-.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 355556666666555444
No 396
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.52 E-value=2.2e+02 Score=23.22 Aligned_cols=57 Identities=7% Similarity=0.029 Sum_probs=39.5
Q ss_pred CCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC--HHHHHHHHHHHHHc
Q 044527 192 NTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT--HALASHLFLNAKKL 258 (860)
Q Consensus 192 ~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~--~~~~~~il~~a~~~ 258 (860)
...+.+.+.+++.|..+... .+ ....+..+.+..+++|++... ..+...++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~-------~~---~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV-------MS---GTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE-------SS---HHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE-------CC---HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 45678888899988865431 12 234555566678999999764 45667788888876
No 397
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=21.43 E-value=87 Score=30.40 Aligned_cols=85 Identities=7% Similarity=0.113 Sum_probs=52.0
Q ss_pred HHHHHHHHHh-----hCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccC--CCCChHHHHHHHHhhhcCC
Q 044527 163 QARGISDFIS-----VFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISL--ASSTHDQIIEKLSMLKSLD 235 (860)
Q Consensus 163 ~~~ai~~~l~-----~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~--~~~~~~~~~~~l~~i~~~~ 235 (860)
.++.+++.+. ...-++|.++..+ ...+.+.+.|++.|.++.....|.. .......+. +.+....
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~------~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~---~~l~~~~ 185 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGE------GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELL---ARVRAER 185 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECS------SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHH---HHHHHTT
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCC------ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHH---HHHHhCC
Confidence 3677777664 4566788776543 3345788999999998765444331 112223333 3344556
Q ss_pred CeEEEEEeCHHHHHHHHHHHHH
Q 044527 236 TKVFVVHMTHALASHLFLNAKK 257 (860)
Q Consensus 236 ~~viil~~~~~~~~~il~~a~~ 257 (860)
.|+| ++.++..+..+++.+.+
T Consensus 186 ~d~v-~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 186 LNGL-VVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp CCEE-ECCSHHHHHHHHHHHGG
T ss_pred CCEE-EEcCHHHHHHHHHHhhH
Confidence 6765 56778888888877643
No 398
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=21.19 E-value=72 Score=31.49 Aligned_cols=82 Identities=7% Similarity=0.035 Sum_probs=51.0
Q ss_pred hCCCcEEEEEEecC----CCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHH
Q 044527 173 VFKWKEVILIHEDN----TWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALA 248 (860)
Q Consensus 173 ~~~w~~v~ii~~~~----~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~ 248 (860)
.-+-+.|+++..+. +|.. ...+.+.+.+++.|..+..... . .+..........+.+.++|.||+.......
T Consensus 5 ~~~s~~Igvv~~~~~~~~~~~~-~~~~gi~~~a~~~g~~~~~~~~-~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 79 (288)
T 3gv0_A 5 TGKTNVIALVLSVDEELMGFTS-QMVFGITEVLSTTQYHLVVTPH-I---HAKDSMVPIRYILETGSADGVIISKIEPND 79 (288)
T ss_dssp --CCCEEEEECBCCCCSSCHHH-HHHHHHHHHHTTSSCEEEECCB-S---SGGGTTHHHHHHHHHTCCSEEEEESCCTTC
T ss_pred cCCCCEEEEEecCCccccHHHH-HHHHHHHHHHHHcCCEEEEecC-C---cchhHHHHHHHHHHcCCccEEEEecCCCCc
Confidence 33457899998863 4555 6788888999999988876422 1 122223344455667889999887543222
Q ss_pred HHHHHHHHHcCC
Q 044527 249 SHLFLNAKKLGM 260 (860)
Q Consensus 249 ~~il~~a~~~gl 260 (860)
..++.+.+.+.
T Consensus 80 -~~~~~l~~~~i 90 (288)
T 3gv0_A 80 -PRVRFMTERNM 90 (288)
T ss_dssp -HHHHHHHHTTC
T ss_pred -HHHHHHhhCCC
Confidence 34666666663
No 399
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=21.15 E-value=3.8e+02 Score=25.93 Aligned_cols=66 Identities=8% Similarity=0.008 Sum_probs=42.1
Q ss_pred eeeHHHHHHHHHhCCCceeEEEEeecCCCCCccCCCHHHHHHHHHcCcccEEEeceeecccccceeeccccccccceEEE
Q 044527 487 GFCIDVFKAAIDTLTFEVPYEFIPFVDAGGRVAAGSYSDLIDQVYFQKFDAAVGDTTITANRSVYVDFTLPYTDMGIGMI 566 (860)
Q Consensus 487 G~~~~l~~~la~~l~f~~~~~~~~~~~~~~~~~~g~~~g~~~~l~~g~~Di~~~~~~~t~~r~~~~~fs~p~~~~~~~~l 566 (860)
.+...++..+.++.. ++++.+... ..+..+.+|++|+++....... ..+ -+.++....++++
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~~-------------~~~~~l~~~~~Dl~i~~~~~~~---~~l-~~~~L~~~~~~~v 167 (306)
T 3hhg_A 106 HLLAPLAAKFNERYP-HIRLSLVSS-------------EGYINLIERKVDIALRAGELDD---SGL-RARHLFDSRFRVI 167 (306)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEECC-------------SSSHHHHTTSSSCEEESCCCCC---SSC-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEec-------------cchhhHhhcCccEEEEeCCCCC---CCe-EEEEeeeeEEEEE
Confidence 345788899988885 356665522 2344678999999986432221 222 2467777888888
Q ss_pred EecC
Q 044527 567 VPID 570 (860)
Q Consensus 567 v~~~ 570 (860)
+++.
T Consensus 168 ~~~~ 171 (306)
T 3hhg_A 168 ASPE 171 (306)
T ss_dssp ECHH
T ss_pred ECHH
Confidence 7654
No 400
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.07 E-value=7.2e+02 Score=25.89 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=83.6
Q ss_pred EEEEEEEecCCcch-hhHHHHHHHHHHHHHhccCCcccEEEEEEecC-CCCHHHHHHHHHHhhccCCeEEEEe---cCCC
Q 044527 43 VHVGIILDMRSWTG-KITNSCISMAIADFYAVNTHCKTRLILHSRDS-QGDPFHALTTASNLMQNVDLQAIIC---IGMT 117 (860)
Q Consensus 43 i~IG~l~~~~~~~g-~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~-~~~~~~a~~~~~~li~~~~v~aviG---p~~~ 117 (860)
+.|-.+.|.+|+.= .....-++...+.-+.... ..++. +++++ .|+....+++..+-+.+.++..++= ....
T Consensus 231 Ldi~~I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~--~~~v~-I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~ 307 (410)
T 4dik_A 231 LKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPK--KGKVT-VIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER 307 (410)
T ss_dssp SCCSEEEESSSCBBSSCHHHHHHHHHHHHHTCCC--TTEEE-EEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC
T ss_pred CCCCEEecCCcchhhcCHHHHHHHHHHhhccccc--cccee-eEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCC
Confidence 34567889998652 2233334443333333221 13444 45555 4777777777666666557766532 1111
Q ss_pred hhHHHHHHHhhcCCCCcEEecccCCCcccccceEeecCCCchhHHHHHHHHHHHh-hCCCcEEEEEEecCCCCCcCCHHH
Q 044527 118 PTGAQILADLGSRAKIPIISLFTTLPNSLTSYSIQIDQDDEASQSQARGISDFIS-VFKWKEVILIHEDNTWGNDNTIPY 196 (860)
Q Consensus 118 s~~~~~~~~~~~~~~ip~Is~~a~~~~~ls~~~~r~~p~~~~~~~~~~ai~~~l~-~~~w~~v~ii~~~~~~g~~~~~~~ 196 (860)
+..+..+.++.+..++.+=|++-... +.| .....+..+.. .+.-|.++++.+- .|+- +..+.
T Consensus 308 ~~~s~i~~~i~~~~~ivlGspT~~~~---------~~p------~~~~~l~~l~~~~~~~K~~~~FGSy-GWsg-~a~~~ 370 (410)
T 4dik_A 308 PAISEILKDIPDSEALIFGVSTYEAE---------IHP------LMRFTLLEIIDKANYEKPVLVFGVH-GWAP-SAERT 370 (410)
T ss_dssp CCHHHHHHHSTTCSEEEEEECCTTSS---------SCH------HHHHHHHHHHHHCCCCCEEEEEEEC-CCCC-TTSCC
T ss_pred CCHHHHHHHHHhCCeEEEEeCCcCCc---------CCH------HHHHHHHHHHhcccCCCEEEEEECC-CCCc-HHHHH
Confidence 33455666666666664434331111 112 22234444432 3556788887754 4555 67889
Q ss_pred HHHHHhhCCceEeEEEec
Q 044527 197 LFDSLHDNDIDIARRTSI 214 (860)
Q Consensus 197 l~~~~~~~g~~i~~~~~~ 214 (860)
+.+.+++.|.+++....+
T Consensus 371 ~~~~l~~~~~~~v~~~~~ 388 (410)
T 4dik_A 371 AGELLKETKFRILSFTEI 388 (410)
T ss_dssp HHHHHTTSSCEEEEEEEE
T ss_pred HHHHHHHCCCEEECcEEE
Confidence 999999999998765443
No 401
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=20.89 E-value=1e+02 Score=28.32 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=58.6
Q ss_pred ceEeecCCCchhHHHHHHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHH
Q 044527 149 YSIQIDQDDEASQSQARGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKL 228 (860)
Q Consensus 149 ~~~r~~p~~~~~~~~~~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l 228 (860)
.+.|+.-.- --++.+..+.++++.+++.++-+. .... .+.+.+-+.+.-.|+++... +..+....+
T Consensus 25 ~l~RIDdRL----IHGQVat~W~k~~~~~~IiVvnD~-vA~D-~~~k~~lkmA~P~gvk~~i~--------sve~ai~~~ 90 (187)
T 3lfj_A 25 VFARIDDRL----IHGQVMTRWMKGFPEASIVIIDDE-LAVD-EFMKNIYTMAAPPGVKVKVF--------GVDAALKEW 90 (187)
T ss_dssp EEEEEETTC----SCTTHHHHHHTTCTTCEEEEECHH-HHHC-HHHHHHHHHTSCTTCCEEEE--------CHHHHHHHH
T ss_pred eEEEEcccc----hhhhhhheeccccCCCEEEEECcc-ccCC-HHHHHHHHHhccCCCeEEEE--------EHHHHHHHH
Confidence 455554332 236778889999999999887432 2222 45555555555567776542 234555566
Q ss_pred HhhhcCCCeEEEEEeCHHHHHHHHH
Q 044527 229 SMLKSLDTKVFVVHMTHALASHLFL 253 (860)
Q Consensus 229 ~~i~~~~~~viil~~~~~~~~~il~ 253 (860)
++-+..+-++++++-++.++..+++
T Consensus 91 ~~~~~~~~~v~il~k~p~d~~~lve 115 (187)
T 3lfj_A 91 SQKTSVEEKVFLLFKNIDTCKRVMD 115 (187)
T ss_dssp HSBCSSCEEEEEEESSHHHHHHHHH
T ss_pred hCCccCCceEEEEECCHHHHHHHHH
Confidence 6555566789999999999887754
No 402
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=20.75 E-value=3e+02 Score=27.43 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=50.5
Q ss_pred CCCcEEEEEEecCCCCCcC----CHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeCHHHHH
Q 044527 174 FKWKEVILIHEDNTWGNDN----TIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMTHALAS 249 (860)
Q Consensus 174 ~~w~~v~ii~~~~~~g~~~----~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~~~~~~ 249 (860)
...+++.+|+... .|. . ..+.+.+.+++.|+++....+ ....+.....+++.+ +.|.|++.+...+..
T Consensus 6 ~~m~~~~vi~Np~-sG~-~~~~~~~~~i~~~l~~~~~~~~~~~t-----~~~~~a~~~~~~~~~-~~d~vv~~GGDGTl~ 77 (304)
T 3s40_A 6 TKFEKVLLIVNPK-AGQ-GDLHTNLTKIVPPLAAAFPDLHILHT-----KEQGDATKYCQEFAS-KVDLIIVFGGDGTVF 77 (304)
T ss_dssp CSCSSEEEEECTT-CSS-SCHHHHHHHHHHHHHHHCSEEEEEEC-----CSTTHHHHHHHHHTT-TCSEEEEEECHHHHH
T ss_pred CCCCEEEEEECcc-cCC-CchHHHHHHHHHHHHHcCCeEEEEEc-----cCcchHHHHHHHhhc-CCCEEEEEccchHHH
Confidence 3456888887554 343 2 345677778888888765433 223344555555543 789999999998988
Q ss_pred HHHHHHHH
Q 044527 250 HLFLNAKK 257 (860)
Q Consensus 250 ~il~~a~~ 257 (860)
.++..+..
T Consensus 78 ~v~~~l~~ 85 (304)
T 3s40_A 78 ECTNGLAP 85 (304)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 88888765
No 403
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=20.66 E-value=3.1e+02 Score=25.45 Aligned_cols=87 Identities=7% Similarity=-0.031 Sum_probs=54.5
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC----HHHHHHHH
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT----HALASHLF 252 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~----~~~~~~il 252 (860)
.+|.+.....+.-. -...-+...++.+|+++..-.. +. .....+..+++.++++|.+.+. .+....++
T Consensus 89 ~~vll~~~~gd~H~-iG~~~va~~l~~~G~~v~~LG~----~v---p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i 160 (210)
T 1y80_A 89 GKIVLGTVKGDLHD-IGKNLVAMMLESGGFTVYNLGV----DI---EPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTI 160 (210)
T ss_dssp CEEEEEEBTTCCCC-HHHHHHHHHHHHTTCEEEECCS----SB---CHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHH
T ss_pred CEEEEEeCCCcccH-HHHHHHHHHHHHCCCEEEECCC----CC---CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHH
Confidence 46777666655433 4567777888999999875221 12 2334555666678999999874 34566777
Q ss_pred HHHHHcCCccCCeEEEecC
Q 044527 253 LNAKKLGMMSKGYVWIATA 271 (860)
Q Consensus 253 ~~a~~~gl~~~~~~~i~~~ 271 (860)
+..++.++...-.+++.+.
T Consensus 161 ~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 161 DALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp HHHHHTTCGGGCEEEEEST
T ss_pred HHHHhcCCCCCCeEEEECC
Confidence 7778777532234455443
No 404
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=20.62 E-value=46 Score=34.58 Aligned_cols=95 Identities=7% Similarity=-0.026 Sum_probs=57.0
Q ss_pred HHHHHHHhhCCCcEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC
Q 044527 165 RGISDFISVFKWKEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT 244 (860)
Q Consensus 165 ~ai~~~l~~~~w~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~ 244 (860)
+.+.++++.+|.+|+.+|++...+ ...+.+.+.++ ..+++.. +. +++........++.+++.++|+||-.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~---~~~~~v~~~L~---~~~~f~~-v~-~~p~~~~v~~~~~~~~~~~~D~IIavGG 97 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREM---SIAHKVASEIE---VAIWHDE-VV-MHVPIEVAERARAVATDNEIDLLVCVGG 97 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGH---HHHHHHTTTSC---CSEEECC-CC-TTCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEECCCHH---HHHHHHHHHcC---CCEEEcc-ee-cCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 457788888898999998765432 22344444443 1223322 22 3456677888888899999999988887
Q ss_pred HH--HHHHHHHHHHHcCCccCCeEEEecCh
Q 044527 245 HA--LASHLFLNAKKLGMMSKGYVWIATAA 272 (860)
Q Consensus 245 ~~--~~~~il~~a~~~gl~~~~~~~i~~~~ 272 (860)
+. |+..++.. ..+ ..++-|.|..
T Consensus 98 Gs~iD~aK~iA~--~~~---~P~i~IPTTa 122 (364)
T 3iv7_A 98 GSTIGLAKAIAM--TTA---LPIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHHH--HHC---CCEEEEECSS
T ss_pred cHHHHHHHHHHh--ccC---CCEEEEcCCc
Confidence 53 22333222 233 3455566655
No 405
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=20.35 E-value=3.1e+02 Score=26.51 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=47.9
Q ss_pred EEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC---HHHHHHHHHH
Q 044527 178 EVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT---HALASHLFLN 254 (860)
Q Consensus 178 ~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~---~~~~~~il~~ 254 (860)
|+++|+... . +.-.++.+.+.+.|-+|+... .+........+++++.+.+++.+.++ .++...++++
T Consensus 8 KvalVTGas---~-GIG~aiA~~la~~Ga~Vv~~~------~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 8 KVVIVTGAG---S-GIGRAIAKKFALNDSIVVAVE------LLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp CEEEEETTT---S-HHHHHHHHHHHHTTCEEEEEE------SCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CEEEEeCCC---C-HHHHHHHHHHHHcCCEEEEEE------CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 677776533 2 556778888888888877633 45566777777888777888877764 5566666666
Q ss_pred HHH
Q 044527 255 AKK 257 (860)
Q Consensus 255 a~~ 257 (860)
+.+
T Consensus 78 ~~~ 80 (254)
T 4fn4_A 78 TFE 80 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 406
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=20.25 E-value=1.1e+02 Score=29.88 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=65.1
Q ss_pred EEEEEEecCCcchhhHHHHHHHHHHHHHhccCCcccEEEEEEecCCCCHHHHHHHHHHhhcc-CCeEEEEecCCChhHHH
Q 044527 44 HVGIILDMRSWTGKITNSCISMAIADFYAVNTHCKTRLILHSRDSQGDPFHALTTASNLMQN-VDLQAIICIGMTPTGAQ 122 (860)
Q Consensus 44 ~IG~l~~~~~~~g~~~~~a~~~Av~~iN~~~~~l~~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aviGp~~~s~~~~ 122 (860)
+|+++....+. ......|++-|+++.+- ++.........+...+.+.+.+++.. +++.||+.... ..+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d--~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHGL-------EPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSND--ITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTTC-------CCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSH--HHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcCc-------CCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEECCh--HHHH
Confidence 57777665544 56667788888876431 11211244556778888888888765 46899998654 4444
Q ss_pred HHHHhhcCCC------CcEEecccCCCccccc-ceEeecCCCchhHHHHHHHHHHHh
Q 044527 123 ILADLGSRAK------IPIISLFTTLPNSLTS-YSIQIDQDDEASQSQARGISDFIS 172 (860)
Q Consensus 123 ~~~~~~~~~~------ip~Is~~a~~~~~ls~-~~~r~~p~~~~~~~~~~ai~~~l~ 172 (860)
.+...+.+.+ +.++++.......+.. .+..+..+.. .+++..++++.
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~~~~~~~p~lttv~~~~~---~~g~~av~~l~ 243 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTPLAQTRLINLTTIDDNSI---GVGYNAALLLL 243 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCHHHHSTTTCCCEEECCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCchHhhccCCCceEEecCHH---HHHHHHHHHHH
Confidence 4444444443 4467765321101111 2333444444 66766666553
No 407
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.04 E-value=2.5e+02 Score=22.97 Aligned_cols=68 Identities=6% Similarity=0.171 Sum_probs=43.2
Q ss_pred cEEEEEEecCCCCCcCCHHHHHHHHhhCCceEeEEEeccCCCCChHHHHHHHHhhhcCCCeEEEEEeC--HHHHHHHHHH
Q 044527 177 KEVILIHEDNTWGNDNTIPYLFDSLHDNDIDIARRTSISLASSTHDQIIEKLSMLKSLDTKVFVVHMT--HALASHLFLN 254 (860)
Q Consensus 177 ~~v~ii~~~~~~g~~~~~~~l~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~~viil~~~--~~~~~~il~~ 254 (860)
.+|.++ +++. ...+.+.+.+++.|..+... .+. ...+..+.+..+++|++... ..+...++++
T Consensus 7 ~~iliv-dd~~----~~~~~l~~~L~~~g~~v~~~-------~~~---~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~ 71 (132)
T 3lte_A 7 KRILVV-DDDQ----AMAAAIERVLKRDHWQVEIA-------HNG---FDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRS 71 (132)
T ss_dssp CEEEEE-CSCH----HHHHHHHHHHHHTTCEEEEE-------SSH---HHHHHHHHHTCCSEEEEESCBTTBCHHHHHHH
T ss_pred ccEEEE-ECCH----HHHHHHHHHHHHCCcEEEEe-------CCH---HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHH
Confidence 355444 3443 45667888888888876532 122 33455566778999999865 3456777888
Q ss_pred HHHcC
Q 044527 255 AKKLG 259 (860)
Q Consensus 255 a~~~g 259 (860)
.++..
T Consensus 72 l~~~~ 76 (132)
T 3lte_A 72 LRQNK 76 (132)
T ss_dssp HHTTT
T ss_pred HHhcC
Confidence 87665
Done!