Query 044530
Match_columns 151
No_of_seqs 115 out of 1048
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_F RP14, S2, YS8, 40S ribo 100.0 1.2E-57 4.2E-62 364.9 17.1 151 1-151 75-225 (225)
2 2xzm_G Ribosomal protein S7 co 100.0 2.1E-55 7E-60 347.6 17.9 149 1-151 49-200 (200)
3 2zkq_g 40S ribosomal protein S 100.0 1E-56 3.5E-61 355.8 0.0 151 1-151 54-204 (204)
4 1iqv_A Ribosomal protein S7; R 100.0 1.2E-53 4.1E-58 340.0 16.4 151 1-151 52-218 (218)
5 3r8n_G 30S ribosomal protein S 100.0 3E-52 1E-56 317.6 15.7 136 7-151 13-148 (151)
6 1rss_A Ribosomal protein S7; R 100.0 4.6E-52 1.6E-56 316.6 16.4 136 7-151 9-144 (151)
7 3gty_S TF, 30S ribosomal prote 100.0 3.3E-52 1.1E-56 316.9 15.4 137 6-151 6-142 (149)
8 1hus_A Ribosomal protein S7; R 100.0 7E-52 2.4E-56 316.8 16.5 136 7-151 13-148 (155)
9 3i1m_G 30S ribosomal protein S 100.0 3.3E-51 1.1E-55 318.9 14.7 136 7-151 14-149 (179)
10 3bbn_G Ribosomal protein S7; s 100.0 6E-52 2.1E-56 317.1 8.3 134 9-151 16-149 (155)
11 1pd3_A Nonstructural protein N 43.9 32 0.0011 21.1 3.8 26 94-119 14-39 (58)
12 4h7y_A Dual specificity protei 40.2 30 0.001 25.9 3.9 34 30-68 107-140 (161)
13 3g36_A Protein DPY-30 homolog; 31.9 71 0.0024 19.4 4.0 33 39-71 20-52 (55)
14 3ezx_A MMCP 1, monomethylamine 30.2 64 0.0022 24.4 4.5 28 13-45 3-30 (215)
15 3kmp_A SMAD1-MH1; protein-DNA 26.1 1.6E+02 0.0055 20.8 5.6 48 13-66 3-50 (124)
No 1
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F
Probab=100.00 E-value=1.2e-57 Score=364.92 Aligned_cols=151 Identities=79% Similarity=1.152 Sum_probs=148.3
Q ss_pred CCccccccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCe
Q 044530 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV 80 (151)
Q Consensus 1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~ 80 (151)
|||++|||++++||++++|||+||+||+++|||++|++|||.||++|+..|++||++||++||+|++|.++++++++||.
T Consensus 75 gr~~~krf~K~~~piv~rliN~LM~~~~~~GKKs~A~~Ivy~AfeiI~~kT~~nPl~Vl~~AI~Nv~P~vesrRvg~gG~ 154 (225)
T 3u5c_F 75 GRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGA 154 (225)
T ss_dssp CCCSSSTTGGGGSCHHHHHHHHHSCSGGGSSCHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHTTSCSEEEECCCSSSS
T ss_pred CCccccCCCCCCCcHHHHHHHHHHhcCccCCcHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHhCCCCeeEEEeccCCE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 81 VRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 81 ~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+||||++|+|.||+++||+||+++|+++++|++++|+++||+|||||++|+|+|++|+||||+||||+|||
T Consensus 155 tyqVPVeV~p~Rr~~LAiRWIi~aark~~~R~~ksmaerLA~ELidAa~~~G~s~AiKKKee~HRmAeANR 225 (225)
T 3u5c_F 155 ARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSSTSYAIKKKDELERVAKSNR 225 (225)
T ss_dssp CCCEEEECCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEeeecCHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999999988888999999999999999999998789999999999999998
No 2
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T 3j0l_T
Probab=100.00 E-value=2.1e-55 Score=347.57 Aligned_cols=149 Identities=66% Similarity=1.069 Sum_probs=145.2
Q ss_pred CCccccccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCe
Q 044530 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV 80 (151)
Q Consensus 1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~ 80 (151)
|||++|+|+++++|+|++|||+||++|.++|||++|++|||.||++|+..|++||++||++||+|++|.+|++++++||+
T Consensus 49 gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~ 128 (200)
T 2xzm_G 49 GRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGV 128 (200)
T ss_dssp CCCSSSSSGGGGSCHHHHHHHHHSCSTTTCCCHHHHHHHHHHHHHHHHHHHCSCTHHHHHHHHHHSSCSEEEEEEEETTE
T ss_pred ccccccccccccChHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeccCCE
Confidence 89999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcC---CCchhhHHhHHHHHHHHHhcC
Q 044530 81 VRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKG---SSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 81 ~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~---~g~~~aikkK~e~hk~A~aNR 151 (151)
+||||++|+|.||+++||+||+++|+++++|++++|+++||+|||||+++ +| ++++||||+||||+|||
T Consensus 129 tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~LA~EiidAa~~~~~~g--~AikKKee~hrmAeANR 200 (200)
T 2xzm_G 129 VRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAETLADEIINAEKNNTQSS--WAIRKKDEIEKVAKGNR 200 (200)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHTCTTSC--HHHHHHHHHHHHHHHHC
T ss_pred EEEEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHhCCCccC--cchhhHHHHHHHHHhcC
Confidence 99999999999999999999999999977778899999999999999999 77 59999999999999998
No 3
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protei complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1e-56 Score=355.76 Aligned_cols=151 Identities=85% Similarity=1.250 Sum_probs=147.1
Q ss_pred CCccccccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCe
Q 044530 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGV 80 (151)
Q Consensus 1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~ 80 (151)
|||++|+|+++++|+|++|||+||++|.++|||++|++|||.||++|+..|++||++||++||+|++|.+|++++++||.
T Consensus 54 gr~~~k~f~k~~~~lV~kliN~lM~~g~n~GKKs~A~~Ivy~A~~~I~~kt~~nPl~Vl~~Ai~Nv~P~~evk~~rvGG~ 133 (204)
T 2zkq_g 54 GRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGT 133 (204)
Confidence 89999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 81 VRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 81 ~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+||||++|+|.||+++||+||+++|+++++|++++|+++||+|||||++|+|.|++|+||||+||||+|||
T Consensus 134 tyqVPveV~p~Rr~~lAirWii~~ar~~~~R~~k~m~e~LA~ElidAa~~~g~s~AikKKee~hrmAeANR 204 (204)
T 2zkq_g 134 VRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204 (204)
Confidence 99999999999999999999999999977778899999999999999999997789999999999999998
No 4
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP: a.75.1.1
Probab=100.00 E-value=1.2e-53 Score=339.99 Aligned_cols=151 Identities=47% Similarity=0.610 Sum_probs=130.5
Q ss_pred CCccccccCCCCChHHHHHHHHhhc---------------CCC-ccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 044530 1 GRYSVKRFRKAQCPIVERLTNSLMM---------------HGR-NNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVI 64 (151)
Q Consensus 1 ~~~~~k~~~~~~~~~v~k~iN~lM~---------------~~~-~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~ 64 (151)
|||++|+|.++++++|++|||+||+ ||. ++|||++|++|||.||++|+..|++||++||++||+
T Consensus 52 gr~~~k~f~k~~~~iV~rliN~lM~~~~~~~~~~~~~~~~~~r~n~GKK~~A~~Iv~~Af~iI~~~t~~nPl~Vl~~Ai~ 131 (218)
T 1iqv_A 52 GRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIE 131 (218)
T ss_dssp ------------CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred hHHHhhhcccccChHHHHHHhHhhhccccccccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 8999999999999999999999999 776 689999999999999999999999999999999999
Q ss_pred hcCcccceeeeccCCeeEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHH
Q 044530 65 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIE 144 (151)
Q Consensus 65 n~~P~~e~~~i~~gG~~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~h 144 (151)
|++|.+++++++.||.+|||||+|+|.||+++||+||+++|+++++|++++|+++||+|||||++++|+|++++||||+|
T Consensus 132 N~~P~~ev~~~r~GG~~yqvPV~V~p~Rr~~lAirwI~~~ar~~~~R~~ksm~e~LA~Eii~Aa~~~g~s~AikKKee~h 211 (218)
T 1iqv_A 132 NAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIE 211 (218)
T ss_dssp HHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hCCCceEEEEeccCCEEEEEeeECCHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHhCCCCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999997666789999999999999999998778999999999
Q ss_pred HHHHhcC
Q 044530 145 RVAKANR 151 (151)
Q Consensus 145 k~A~aNR 151 (151)
|||++||
T Consensus 212 RmAeaNR 218 (218)
T 1iqv_A 212 RIAESSR 218 (218)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 9999998
No 5
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_G* 3j18_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G 4gd1_G 4gd2_G 3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G 4a2i_G 2gy9_G 2gyb_G
Probab=100.00 E-value=3e-52 Score=317.64 Aligned_cols=136 Identities=29% Similarity=0.400 Sum_probs=131.0
Q ss_pred ccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEee
Q 044530 7 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAV 86 (151)
Q Consensus 7 ~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv 86 (151)
+-|.++||+|++|||+||+ +|||++|++|||.||++|+..|++||++||++||+|++|.+|+++.++||++||||+
T Consensus 13 ~dp~~~~~lv~kliN~lM~----~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~tyqvPv 88 (151)
T 3r8n_G 13 PDPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPV 88 (151)
T ss_dssp CCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHCCSEEECCCCCSSCCCCCEE
T ss_pred CCCCcCCHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCCeEEEEEeeCCEEEEEec
Confidence 4467888999999999999 799999999999999999999999999999999999999999999899999999999
Q ss_pred ecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 87 DISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 87 ~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+|+|.||+++||+||+++|++ |++++|+++||+|||||++|+|. +|+||||+||||++||
T Consensus 89 ~v~~~Rr~~lAirWii~~ar~---r~~k~m~~~LA~ElidA~~~~g~--aikKKee~hkmAeaNr 148 (151)
T 3r8n_G 89 EVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT--AVKKREDVHRMAEANK 148 (151)
T ss_dssp ECCHHHHHHHHHHHHHHHHHT---CCSSCHHHHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHGG
T ss_pred ccCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCcch--hhhHHHHHHHHHHHhh
Confidence 999999999999999999999 77899999999999999999996 9999999999999997
No 6
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=100.00 E-value=4.6e-52 Score=316.61 Aligned_cols=136 Identities=34% Similarity=0.428 Sum_probs=129.6
Q ss_pred ccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEee
Q 044530 7 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAV 86 (151)
Q Consensus 7 ~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv 86 (151)
+-|.++||+|++|||+||+ +|||++|++|||.||++|+..|++||+++|++||+|++|.+|++++++||++||||+
T Consensus 9 ~dp~~~~~lv~kliN~lM~----~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqvPv 84 (151)
T 1rss_A 9 PDLVYGDVLVTAFINKIMR----DGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPM 84 (151)
T ss_dssp CCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEE
T ss_pred CCCCcCCHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEee
Confidence 4578899999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 87 DISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 87 ~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+|+|.||+++||+||+++|++ |++++|+++||+||+||++|+|. +++||||+||||++||
T Consensus 85 ~v~~~Rr~~lAirWi~~~ar~---r~~k~m~~~La~EiidA~~~~g~--aikKKee~hrmAeaNR 144 (151)
T 1rss_A 85 EVSPRRQQSLALRWLVQAANQ---RPERRAAVRIAHELMDAAEGKGG--AVKKKEDVERMAEANR 144 (151)
T ss_dssp ECCHHHHHHHHHHHHHHHHTT---SSCSSHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHCC--
T ss_pred ecCHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCCCc--eeehHHHHHHHHHHhH
Confidence 999999999999999999999 67889999999999999999994 9999999999999997
No 7
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=100.00 E-value=3.3e-52 Score=316.86 Aligned_cols=137 Identities=31% Similarity=0.403 Sum_probs=132.4
Q ss_pred cccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEe
Q 044530 6 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQA 85 (151)
Q Consensus 6 k~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vP 85 (151)
.+-|.++||+|++|||+||+ +|||++|++|||.||++|++.|++||++||++||+|++|.+|+++.++||.+||||
T Consensus 6 ~~dp~~~~~lv~kliN~lM~----~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evks~rvGG~~yqvP 81 (149)
T 3gty_S 6 PPDPVFGDVLVAKLINRVMW----DGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVP 81 (149)
T ss_dssp CCCSSSCCHHHHHHHHHHCB----TTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCSEEEEEECSSSSCEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEe
Confidence 46688999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred eecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 86 VDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 86 v~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
++|+|.||+++||+||+++|++ |++++|+++||+||+||++|+|. +++||||+||||++||
T Consensus 82 v~v~~~rr~~lAirWi~~~ar~---r~~k~m~~~LA~Eli~A~~~~g~--aikKKee~hkmAeaNR 142 (149)
T 3gty_S 82 IEVQEPRRTSLALRWIVEAARA---KKGRPMKEKLAEEIIAAYNNTGT--AIKKKEDTHRMAEANR 142 (149)
T ss_dssp EECCTHHHHHHHHHHHHHHHHT---CSSSCHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHTTSG
T ss_pred eecCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCch--hhhHHHHHHHHHHHhH
Confidence 9999999999999999999999 77899999999999999999995 9999999999999997
No 8
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=100.00 E-value=7e-52 Score=316.80 Aligned_cols=136 Identities=33% Similarity=0.439 Sum_probs=130.2
Q ss_pred ccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEee
Q 044530 7 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAV 86 (151)
Q Consensus 7 ~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv 86 (151)
+-|.++|++|++|||+||+ +|||++|++|||.||++|+..|++||++||++||+|++|.+|++++++||++||||+
T Consensus 13 ~dp~y~~~lV~kliN~lM~----~GKKs~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv 88 (155)
T 1hus_A 13 PDPIYNSKLVTRLINKIMI----DGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPV 88 (155)
T ss_dssp CCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEE
T ss_pred CCCCcCCHHHHHHHHHHHh----CccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCceEEEEeecCCEEEEEee
Confidence 3467889999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 87 DISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 87 ~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+|+|.||+++||+||+++|++ |++++|+++||+||+||++|+|. +++||||+||||++||
T Consensus 89 ~v~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g~--aikKKee~hrmAeaNR 148 (155)
T 1hus_A 89 EVRPDRRVSLGLRWLVQYARL---RNEKTMEERLANEIMDAANNTGA--AVKKREDTHKMAEANK 148 (155)
T ss_dssp ECCHHHHHHHHHHHHHHHHHH---SCSSSHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHHHC-
T ss_pred ecCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCCc--eeehHHHHHHHHHHhH
Confidence 999999999999999999999 77899999999999999999995 9999999999999997
No 9
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=100.00 E-value=3.3e-51 Score=318.93 Aligned_cols=136 Identities=29% Similarity=0.400 Sum_probs=130.9
Q ss_pred ccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEee
Q 044530 7 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAV 86 (151)
Q Consensus 7 ~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv 86 (151)
+-|.++||+|++|||+||+ +|||++|++|||.||++|+..|++||++||++||+|++|.+|+++.++||++||||+
T Consensus 14 pdp~y~~~lV~kliN~lM~----~GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~AI~Nv~P~veVks~rvGG~tyqVPv 89 (179)
T 3i1m_G 14 PDPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPV 89 (179)
T ss_dssp CCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCSEEEECCCCSSSCCCEEE
T ss_pred CCCCcCCHHHHHHHHHHHh----ccCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEEEeeCCEEEEEcc
Confidence 4467888999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 87 DISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 87 ~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+|+|.||+++||+||+++|++ |++++|+++||+|||||++|+|. +|+||||+|||||+||
T Consensus 90 ~V~p~Rr~~lAirWii~~ark---R~~k~m~erLA~ELidAa~~~G~--AikKKee~HkmAeANR 149 (179)
T 3i1m_G 90 EVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT--AVKKREDVHRMAEANK 149 (179)
T ss_dssp ECCTTHHHHHHHHHHHHHHTT---CCSSSHHHHHHHHHHHHHTSCSH--HHHHHHHHHHHTTTGG
T ss_pred ccCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCcch--hhhHHHHHHHHHHHhH
Confidence 999999999999999999999 77899999999999999999995 9999999999999997
No 10
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=6e-52 Score=317.09 Aligned_cols=134 Identities=31% Similarity=0.415 Sum_probs=129.4
Q ss_pred CCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEeeec
Q 044530 9 RKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDI 88 (151)
Q Consensus 9 ~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv~i 88 (151)
|.++|++|++|||+||+ +|||++|++|||.||++|+..|++||++||++||+|++|.+|++++++||++||||++|
T Consensus 16 p~y~~~lv~kliN~lM~----~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~~evk~~rvGG~tyqVPv~v 91 (155)
T 3bbn_G 16 PIYRNRLVNMLVNRILK----HGKKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEI 91 (155)
T ss_dssp TTTCCSSGGGHHHHSCC----TTCHHHHHHHHSHHHHTTTTTCSSCTTHHHHHHGGGTCCSEEECCEEETTEEECCEEEC
T ss_pred CccCCHHHHHHHHHHHh----cCcHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEEEEeccCCeEEEEeeec
Confidence 55667899999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 89 SPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 89 ~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
+|.||+++||+||+++|++ |++++|+++||+||+||++|+|. +++||||+|||||+||
T Consensus 92 ~~~Rr~~lAirWi~~~ar~---R~~k~m~~~La~EiidA~~~~g~--aikKKee~hkmAeaNR 149 (155)
T 3bbn_G 92 GSTQGKALAIRWLLGAARK---RPGRNMAFKLSSELVDAAKGSGD--AVRKKEETHRMAEANR 149 (155)
T ss_dssp CHHHHHHHHTTHHHHHHHT---CCSSCHHHHHHHHHHHHHHTCHH--HHHHHHHHHHHSSSSG
T ss_pred CHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCCc--hhhHHHHHHHHHHHHH
Confidence 9999999999999999999 77899999999999999999996 9999999999999997
No 11
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=43.93 E-value=32 Score=21.15 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhccCCcCcHHHH
Q 044530 94 VNQALYLLTTGARESAFRNIKTIAEC 119 (151)
Q Consensus 94 ~~lAikWii~~a~~~~~r~~~~~~~~ 119 (151)
.+--|+|||+.++.+-...+++|.+-
T Consensus 14 KFEeIRwlIeE~Rh~Lk~TensfeQI 39 (58)
T 1pd3_A 14 KFEEIRWLIEEVRHRLKITENSFEQI 39 (58)
T ss_dssp HHHHHHHHHHHHHHTCCCCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 45579999999998765667777653
No 12
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=40.16 E-value=30 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=29.6
Q ss_pred cChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCc
Q 044530 30 NGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGP 68 (151)
Q Consensus 30 ~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P 68 (151)
.|+=.+|++|+-.++. ....|.++|..||.|+..
T Consensus 107 qgnl~kARkILg~AiG-----~~~k~~~~le~a~~nl~~ 140 (161)
T 4h7y_A 107 QGNVKKSKQLLQKAVE-----RGAVPLEMLEIALRNLNL 140 (161)
T ss_dssp TTCHHHHHHHHHHHHH-----TTCBCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhc-----cCCCcHHHHHHHHHhhhc
Confidence 4889999999999988 567799999999999864
No 13
>3g36_A Protein DPY-30 homolog; X-type four-helix bundle, nucleus, nuclear protein; 1.20A {Homo sapiens}
Probab=31.87 E-value=71 Score=19.44 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHhcCcccc
Q 044530 39 IVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED 71 (151)
Q Consensus 39 i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e 71 (151)
++...|..+.+..+.||+..|-.-+-.=.|-++
T Consensus 20 ~L~~GL~~lak~rP~DPi~~LA~~Ll~~~~~~~ 52 (55)
T 3g36_A 20 ILLQGMAVLAKERPPNPIEFLASYLLKNKAQFE 52 (55)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHHGGGGT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHhCcccc
Confidence 566778888888899999999888877666554
No 14
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.21 E-value=64 Score=24.38 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=23.0
Q ss_pred ChHHHHHHHHhhcCCCccChHHHHHHHHHHHHH
Q 044530 13 CPIVERLTNSLMMHGRNNGKKLMAVLIVKHAME 45 (151)
Q Consensus 13 ~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~ 45 (151)
++++++|...++. |....+..++.+++.
T Consensus 3 ~~~~~~l~~al~~-----~d~~~~~~~~~~al~ 30 (215)
T 3ezx_A 3 QEIFDKLRDAIVN-----QNVAGTPELCKEALA 30 (215)
T ss_dssp HHHHHHHHHHHHT-----TCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh-----CCHHHHHHHHHHHHH
Confidence 4678888888888 888888888888875
No 15
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=26.09 E-value=1.6e+02 Score=20.81 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=32.2
Q ss_pred ChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhc
Q 044530 13 CPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINS 66 (151)
Q Consensus 13 ~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~ 66 (151)
.|+|.+|+. .+.| +..-.-|++.+...+..+++ ..+-++.|.+||+.=
T Consensus 3 ~~~v~~ll~--~~~~--~~~~~~~~kav~sL~KklK~--~~~~Le~L~~Av~~~ 50 (124)
T 3kmp_A 3 SPAVKRLLG--WKQG--DEEEKWAEKAVDALVKKLKK--KKGAMEELEKALSCP 50 (124)
T ss_dssp CHHHHHHHH--TCCC--CHHHHHHHHHHHHHHHHHTT--STTHHHHHHHHHHCT
T ss_pred chhhhHHhh--hhcC--CchhhHHHHHHHHHHHHHHh--ccchHHHHHHHHhCC
Confidence 577877765 4543 33444567777777776654 247899999999853
Done!