Query 044530
Match_columns 151
No_of_seqs 115 out of 1048
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 06:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044530.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044530hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iqva_ a.75.1.1 (A:) Ribosoma 100.0 4.7E-55 3.4E-59 344.3 16.8 151 1-151 35-201 (201)
2 d2qalg1 a.75.1.1 (G:2-151) Rib 100.0 3.2E-51 2.3E-55 310.0 16.5 135 8-151 13-147 (150)
3 d1husa_ a.75.1.1 (A:) Ribosoma 100.0 1.8E-50 1.3E-54 302.4 16.5 135 7-150 5-139 (139)
4 d1rssa_ a.75.1.1 (A:) Ribosoma 100.0 4.7E-50 3.4E-54 301.8 16.4 136 7-151 3-138 (145)
5 d1pd3a_ a.30.3.1 (A:) Nonstruc 46.1 14 0.001 20.9 3.8 27 93-119 9-35 (54)
6 d3bula1 a.46.1.1 (A:651-740) M 37.5 13 0.00093 23.5 3.0 80 11-103 5-84 (90)
7 d2a7wa1 a.204.1.4 (A:4-94) Pho 31.9 40 0.0029 21.0 4.8 41 20-64 23-63 (91)
8 d1yvwa1 a.204.1.4 (A:4-95) Pho 25.3 61 0.0044 20.1 4.8 42 19-64 21-62 (92)
9 d1y6xa1 a.204.1.4 (A:7-93) Pho 23.0 62 0.0045 19.9 4.4 40 20-63 24-63 (87)
10 d1yxba1 a.204.1.4 (A:4-91) Pho 21.1 22 0.0016 22.3 1.8 35 30-64 30-64 (88)
No 1
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=100.00 E-value=4.7e-55 Score=344.27 Aligned_cols=151 Identities=47% Similarity=0.622 Sum_probs=134.5
Q ss_pred CCccccccCCCCChHHHHHHHHhhcCCCc----------------cChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 044530 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVI 64 (151)
Q Consensus 1 ~~~~~k~~~~~~~~~v~k~iN~lM~~~~~----------------~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~ 64 (151)
|||+.|+|.++++|+|++|||.||.+|++ +|||++|++||++||++|+..|++||++||.+||+
T Consensus 35 gr~~~~~f~k~~~~iVERlin~lM~~G~~~~~~~~~~~~~~h~~~~GKK~~A~kIv~~A~~iI~~kt~~nPl~Vl~~AI~ 114 (201)
T d1iqva_ 35 GRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIE 114 (201)
T ss_dssp ------------CBHHHHHHHHHHTTCCC-----------------CHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred cchhhhhcccccchHHHHHHHHhhhccccccccccccchhccccCCccHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Confidence 89999999999999999999999999976 79999999999999999999999999999999999
Q ss_pred hcCcccceeeeccCCeeEEEeeecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHH
Q 044530 65 NSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIE 144 (151)
Q Consensus 65 n~~P~~e~~~i~~gG~~~~vPv~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~h 144 (151)
|++|.+|++++++||.+||||++++|.||+++||+||+++|+++++++.++|+++||+|||+|++|+|.|+||+||||+|
T Consensus 115 N~~P~~Ev~~~r~GG~~yqvPv~vsp~Rr~~lAirwI~~~ar~~~~r~~ks~~e~LA~Eii~Aa~~~~ks~AikKKeE~h 194 (201)
T d1iqva_ 115 NAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIE 194 (201)
T ss_dssp HHSCSCEEEEEEETTEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhcceEEEEEEecCCcccccCeeeCHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCCcceEeehHHHH
Confidence 99999999999999999999999999999999999999999998878889999999999999999998778999999999
Q ss_pred HHHHhcC
Q 044530 145 RVAKANR 151 (151)
Q Consensus 145 k~A~aNR 151 (151)
|+|++||
T Consensus 195 k~A~aNR 201 (201)
T d1iqva_ 195 RIAESSR 201 (201)
T ss_dssp HHHHHCC
T ss_pred HHHHhcC
Confidence 9999998
No 2
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=3.2e-51 Score=309.99 Aligned_cols=135 Identities=29% Similarity=0.406 Sum_probs=130.4
Q ss_pred cCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEeee
Q 044530 8 FRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVD 87 (151)
Q Consensus 8 ~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv~ 87 (151)
-|+|+|++|++|||+||+ +|||++|++||+++|++|+..|++||+++|++||+|++|.+|++++++||++||||++
T Consensus 13 D~~y~~~lV~kfiN~lM~----~GKK~~A~~iv~~al~~i~~~t~~~pi~vl~~AI~nv~P~~ev~~~r~gG~~yqvP~~ 88 (150)
T d2qalg1 13 DPKFGSELLAKFVNILMV----DGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVE 88 (150)
T ss_dssp CSSSCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHSCCSEEEEEEECSSSEEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHhccceeEEeeeeccccceeeee
Confidence 356789999999999999 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 88 ISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 88 i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
|+|.|++++||+||+++|++ +++++|+++||+||+||++|+|. ++++|||+||+|++||
T Consensus 89 v~~~r~~~lAirWi~~aar~---r~~k~~~~~La~Eii~A~~~~g~--avkKk~e~hk~AeaNR 147 (150)
T d2qalg1 89 VRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENKGT--AVKKREDVHRMAEANK 147 (150)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---SCCSSHHHHHHHHHHHHTTTCSH--HHHHHHHHHHHTTTTT
T ss_pred cChHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhCCCC--eEeeHHHHHHHHHHHh
Confidence 99999999999999999999 67789999999999999999995 9999999999999998
No 3
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=100.00 E-value=1.8e-50 Score=302.40 Aligned_cols=135 Identities=33% Similarity=0.435 Sum_probs=130.3
Q ss_pred ccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEee
Q 044530 7 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAV 86 (151)
Q Consensus 7 ~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv 86 (151)
+-|+|+||+|++|||+||+ +|||++|++||+++|++|+..|++||+++|++||+|++|.+|++++++||.+||||+
T Consensus 5 pd~~y~~~lv~k~iN~lM~----~GKK~~A~kiv~~al~~i~~~~~~~pi~vl~~Ai~n~~P~~ev~~~r~GG~~yqvPv 80 (139)
T d1husa_ 5 PDPIYNSKLVTRLINKIMI----DGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVRARRVGGANYQVPV 80 (139)
T ss_dssp CCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEECCEETTEECCEEE
T ss_pred CCCccCCHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHhhhhhhheeeeeeCccceEeeE
Confidence 3478999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhc
Q 044530 87 DISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKAN 150 (151)
Q Consensus 87 ~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aN 150 (151)
++++.||+++||+||+++|++ |++++|+++||+||++|++|+|. +++||+|+||+|++|
T Consensus 81 ~i~~~rr~~lAirwi~~~a~~---r~~~~~~~~La~Eii~A~~~~g~--avkKK~e~hk~AeaN 139 (139)
T d1husa_ 81 EVRPDRRVSLGLRWLVQYARL---RNEKTMEERLANEIMDAANNTGA--AVKKREDTHKMAEAN 139 (139)
T ss_dssp ECCHHHHHHHHHHHHHHHHHH---SCSSSHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHHHC
T ss_pred eeChHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCCCc--eeeeHHHHHHHHhcC
Confidence 999999999999999999999 67789999999999999999995 999999999999998
No 4
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=4.7e-50 Score=301.85 Aligned_cols=136 Identities=34% Similarity=0.428 Sum_probs=129.8
Q ss_pred ccCCCCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEee
Q 044530 7 RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAV 86 (151)
Q Consensus 7 ~~~~~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv 86 (151)
+=|.++||+|++|||+||+ +|||++|++||+++|++|+..|++||+++|++||+|++|.+|++++++||.+||||+
T Consensus 3 pdp~y~d~lv~k~in~lMk----~GKK~~A~~iv~~al~~i~~~~~~npi~vl~~Ai~n~~P~~evk~~r~gG~~~~vPv 78 (145)
T d1rssa_ 3 PDLVYGDVLVTAFINKIMR----DGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVRSRRVGGANYQVPM 78 (145)
T ss_dssp CCTTTCCHHHHHHHHHHCC----TTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCSEEEEEEEETTEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhccccccceeeeeeCCcceeeee
Confidence 4578999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHHHHHHHHHHHHHHhhccCCcCcHHHHHHHHHHHHHcCCCchhhHHhHHHHHHHHHhcC
Q 044530 87 DISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151 (151)
Q Consensus 87 ~i~~~rr~~lAikWii~~a~~~~~r~~~~~~~~La~Eii~A~~~~g~~~aikkK~e~hk~A~aNR 151 (151)
++++.||+++||+||+++|++ |++++|+++||+||++|++|+|. +++||+|+||+|++||
T Consensus 79 ~i~~~rr~~lAirwil~aa~~---r~~k~~~~~La~Eii~A~~~~g~--aikkK~e~hK~A~aNR 138 (145)
T d1rssa_ 79 EVSPRRQQSLALRWLVQAANQ---RPERRAAVRIAHELMDAAEGKGG--AVKKKEDVERMAEANR 138 (145)
T ss_dssp ECCHHHHHHHHHHHHHHHHTT---SSCSSHHHHHHHHHHHHHTTCSH--HHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCCc--eeehHHHHHHHHHHHH
Confidence 999999999999999999999 67789999999999999999995 9999999999999998
No 5
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=46.12 E-value=14 Score=20.94 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhccCCcCcHHHH
Q 044530 93 RVNQALYLLTTGARESAFRNIKTIAEC 119 (151)
Q Consensus 93 r~~lAikWii~~a~~~~~r~~~~~~~~ 119 (151)
+.+--|+|||+.++.+-...+++|.+-
T Consensus 9 qkfeeirwlieevrh~lk~tensfeqi 35 (54)
T d1pd3a_ 9 QKFEEIRWLIEEVRHRLKITENSFEQI 35 (54)
T ss_dssp HHHHHHHHHHHHHHHTCCCCTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 345679999999998665567777653
No 6
>d3bula1 a.46.1.1 (A:651-740) Methionine synthase domain {Escherichia coli [TaxId: 562]}
Probab=37.48 E-value=13 Score=23.50 Aligned_cols=80 Identities=18% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHhcCcccceeeeccCCeeEEEeeecCh
Q 044530 11 AQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISP 90 (151)
Q Consensus 11 ~~~~~v~k~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~n~~P~~e~~~i~~gG~~~~vPv~i~~ 90 (151)
++-|+-+++-..+++ |++..+...+.+++. .+.+|+.|+..++--..=.+. .+.. .-.+++|--+-.
T Consensus 5 r~~~v~ErL~~AII~-----G~~d~v~e~v~~al~-----~g~~p~~Ii~~~Li~gm~~VG-~~f~--~ge~flP~vl~s 71 (90)
T d3bula1 5 RSWEVNKRLEYSLVK-----GITEFIEQDTEEARQ-----QATRPCEVIEGPLMDGMNVVG-DLFG--EGKMFLPQVVKS 71 (90)
T ss_dssp GGSCHHHHHHHHHHH-----TCCTTHHHHHHHHHH-----HSSSTTHHHHTHHHHHHHHHH-HHHH--HTSSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHc-----CcHHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHH-HHhc--CCCchHHHHHHH
Confidence 355788889999998 999999999999886 467999998877633222222 2333 236778877777
Q ss_pred hHHHHHHHHHHHH
Q 044530 91 LRRVNQALYLLTT 103 (151)
Q Consensus 91 ~rr~~lAikWii~ 103 (151)
-+...-|+..|--
T Consensus 72 A~aMk~~~~~L~P 84 (90)
T d3bula1 72 ARVMKQAVAYLEP 84 (90)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776643
No 7
>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase HisE {Chromobacterium violaceum [TaxId: 536]}
Probab=31.88 E-value=40 Score=20.99 Aligned_cols=41 Identities=15% Similarity=0.272 Sum_probs=33.3
Q ss_pred HHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 044530 20 TNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVI 64 (151)
Q Consensus 20 iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~ 64 (151)
|+.|+. +|.-..++++...+.+.|-.....|+-.++..|=+
T Consensus 23 t~~L~~----~G~~~i~kKigEEa~E~i~A~~~~~~~~vi~EaAD 63 (91)
T d2a7wa1 23 VASLFH----KGEDAILKKVAEEAAETLMASKDKDKLHLVREVAD 63 (91)
T ss_dssp HHHHHH----HCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHh----CChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 444555 59999999999999999998888888888777644
No 8
>d1yvwa1 a.204.1.4 (A:4-95) Phosphoribosyl-ATP pyrophosphatase HisE {Bacillus cereus [TaxId: 1396]}
Probab=25.32 E-value=61 Score=20.14 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=33.7
Q ss_pred HHHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 044530 19 LTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVI 64 (151)
Q Consensus 19 ~iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~ 64 (151)
.|+.|+. +|....++++...+.+.|-...+.|+-.++++|=+
T Consensus 21 Yt~~L~~----~G~~~i~~KigEEa~E~i~Aa~~~~k~~~i~E~AD 62 (92)
T d1yvwa1 21 YTNYLFS----KGEDKILKKIGEECAEVIIACKNNDKEEVVKEMVD 62 (92)
T ss_dssp HHHHHHH----HCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHh----CChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566 59999999999999999988778888888777643
No 9
>d1y6xa1 a.204.1.4 (A:7-93) Phosphoribosyl-ATP pyrophosphatase HisE {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.01 E-value=62 Score=19.87 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=31.9
Q ss_pred HHHhhcCCCccChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 044530 20 TNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAV 63 (151)
Q Consensus 20 iN~lM~~~~~~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai 63 (151)
+..|+. +|....|+++...+.+.+-...+.|+-.++++|=
T Consensus 24 t~~L~~----~G~~ki~~KigEEa~E~iiA~~~~~~~~~i~EaA 63 (87)
T d1y6xa1 24 TVAALD----GGVHALGKKLLEEAGEVWLAAEHESNDALAEEIS 63 (87)
T ss_dssp HHHHHH----TCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHH----CchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455566 5999999999999999998777777777776663
No 10
>d1yxba1 a.204.1.4 (A:4-91) Phosphoribosyl-ATP pyrophosphatase HisE {Streptomyces coelicolor [TaxId: 1902]}
Probab=21.14 E-value=22 Score=22.26 Aligned_cols=35 Identities=11% Similarity=0.062 Sum_probs=29.7
Q ss_pred cChHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 044530 30 NGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVI 64 (151)
Q Consensus 30 ~GKK~~A~~i~~~al~~i~~~~~~npi~vl~~Ai~ 64 (151)
+|....+.++..++.+.|-...+.|+=.+..+|-+
T Consensus 30 ~G~~~i~kKv~EEa~E~i~A~~~~~~~~~i~EaAD 64 (88)
T d1yxba1 30 KGVHAIGKKVVEEAAEVWMAAEYEGKDAAAEEISQ 64 (88)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 69999999999999999987777888888777643
Done!