RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044530
(151 letters)
>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G*
2noq_F 1s1h_G 3iz6_F
Length = 225
Score = 248 bits (634), Expect = 3e-85
Identities = 119/151 (78%), Positives = 137/151 (90%)
Query: 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
GRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AV I+KH ++II++LTDQNPIQV+V
Sbjct: 75 GRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVV 134
Query: 61 DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
DA+ N+GPRED TR+G G RRQAVD+SPLRRVNQA+ LLT GARE+AFRNIKTIAE L
Sbjct: 135 DAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETL 194
Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
A+ELINAAKGSS SYAIKKKDE+ERVAK+NR
Sbjct: 195 AEELINAAKGSSTSYAIKKKDELERVAKSNR 225
>2xzm_G Ribosomal protein S7 containing protein; ribosome, translation;
3.93A {Tetrahymena thermophila} PDB: 2xzn_G 3j0o_T
3j0l_T
Length = 200
Score = 240 bits (614), Expect = 2e-82
Identities = 97/152 (63%), Positives = 128/152 (84%), Gaps = 1/152 (0%)
Query: 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
GRY VK+FRK QCPIVERL +LM HGRN GKK + + +VK+A EIIHL+T +NP++V V
Sbjct: 49 GRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLVTGRNPLEVFV 108
Query: 61 DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
AV N+GPRED+TRIG+AGVVR+QAVD++P+RRVN A+Y + G RESAF+++++IAE L
Sbjct: 109 GAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAETL 168
Query: 121 ADELINAAKGSS-NSYAIKKKDEIERVAKANR 151
ADE+INA K ++ +S+AI+KKDEIE+VAK NR
Sbjct: 169 ADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200
>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal
subunit, ribosomal protei complex; 8.70A {Canis
familiaris}
Length = 204
Score = 240 bits (614), Expect = 2e-82
Identities = 129/151 (85%), Positives = 143/151 (94%)
Query: 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIV 60
GRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM V IVKHA EIIHLLT +NP+QV+V
Sbjct: 54 GRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLV 113
Query: 61 DAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECL 120
+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQA++LL TGARE+AFRNIKTIAECL
Sbjct: 114 NAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECL 173
Query: 121 ADELINAAKGSSNSYAIKKKDEIERVAKANR 151
ADELINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 174 ADELINAAKGSSNSYAIKKKDELERVAKSNR 204
>1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn-
helix, ribosome; 2.10A {Pyrococcus horikoshii} SCOP:
a.75.1.1
Length = 218
Score = 235 bits (600), Expect = 4e-80
Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 16/167 (9%)
Query: 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVLIVKHAM 44
GR++ K F KA IVERL N +M G + N KK+ A +VK A
Sbjct: 52 GRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAF 111
Query: 45 EIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTG 104
+II T +NPIQV+V A+ N+ PRED T + G+ AVDISPLRR++ AL + G
Sbjct: 112 KIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALG 171
Query: 105 ARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151
A +R + AE LA+E+I AA SYA KK EIER+A+++R
Sbjct: 172 ASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 218
>3bbn_G Ribosomal protein S7; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 155
Score = 75.3 bits (186), Expect = 3e-18
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 13/139 (9%)
Query: 15 IVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED--A 72
+V L N ++ HG KK +A I+ A++ I T+ NP+ V+ A+ P A
Sbjct: 22 LVNMLVNRILKHG----KKSLAYQILYRAVKKIQQKTETNPLSVLRQAIRGVTPDIAVKA 77
Query: 73 TRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSS 132
R+G G + ++I + A+ L AR+ R + +A L+ EL++AAKGS
Sbjct: 78 RRVG--GSTHQVPIEIGSTQGKALAIRWLLGAARK---RPGRNMAFKLSSELVDAAKGSG 132
Query: 133 NSYAIKKKDEIERVAKANR 151
+ A++KK+E R+A+ANR
Sbjct: 133 D--AVRKKEETHRMAEANR 149
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A
{Geobacillus stearothermophilus} SCOP: a.75.1.1
Length = 155
Score = 71.8 bits (177), Expect = 5e-17
Identities = 48/140 (34%), Positives = 78/140 (55%), Gaps = 13/140 (9%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED-- 71
+V RL N +M+ G KK A I+ A +II T ++P++V A+ N P +
Sbjct: 20 KLVTRLINKIMIDG----KKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVR 75
Query: 72 ATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGS 131
A R+G G + V++ P RRV+ L L AR RN KT+ E LA+E+++AA +
Sbjct: 76 ARRVG--GANYQVPVEVRPDRRVSLGLRWLVQYARL---RNEKTMEERLANEIMDAANNT 130
Query: 132 SNSYAIKKKDEIERVAKANR 151
A+KK+++ ++A+AN+
Sbjct: 131 GA--AVKKREDTHKMAEANK 148
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle,
cell division, chapero isomerase, rotamase,
ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Length = 149
Score = 71.8 bits (177), Expect = 6e-17
Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED-- 71
+V +L N +M G KK +A IV A +II T ++P++V AV N P +
Sbjct: 14 VLVAKLINRVMWDG----KKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVR 69
Query: 72 ATRIGSAGVVRRQA-VDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKG 130
R+G A Q +++ RR + AL + AR + + + E LA+E+I A
Sbjct: 70 PRRVGGATY---QVPIEVQEPRRTSLALRWIVEAARA---KKGRPMKEKLAEEIIAAYNN 123
Query: 131 SSNSYAIKKKDEIERVAKANR 151
+ AIKKK++ R+A+ANR
Sbjct: 124 TGT--AIKKKEDTHRMAEANR 142
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus
thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G*
1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G
1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G
2zm6_G 3fic_G* 3mr8_G ...
Length = 151
Score = 71.4 bits (176), Expect = 7e-17
Identities = 48/140 (34%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED-- 71
+V N +M G KK +A I A +II T Q P++V AV N PR +
Sbjct: 16 VLVTAFINKIMRDG----KKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVR 71
Query: 72 ATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGS 131
+ R+G G + +++SP R+ + AL L A + R + A +A EL++AA+G
Sbjct: 72 SRRVG--GANYQVPMEVSPRRQQSLALRWLVQAANQ---RPERRAAVRIAHELMDAAEGK 126
Query: 132 SNSYAIKKKDEIERVAKANR 151
A+KKK+++ER+A+ANR
Sbjct: 127 GG--AVKKKEDVERMAEANR 144
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G
3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G
3or9_G 3ora_G 3uoq_G* 2qal_G* 1p6g_G 1p87_G 2aw7_G
2avy_G ...
Length = 179
Score = 71.9 bits (177), Expect = 9e-17
Identities = 40/140 (28%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED-- 71
++ + N LM+ G KK A IV A+E + + ++ ++ A+ N P +
Sbjct: 21 ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVK 76
Query: 72 ATRIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGS 131
+ R+G G + V++ P+RR A+ + AR+ R K++A LA+EL +AA+
Sbjct: 77 SRRVG--GSTYQVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAENK 131
Query: 132 SNSYAIKKKDEIERVAKANR 151
A+KK++++ R+A+AN+
Sbjct: 132 GT--AVKKREDVHRMAEANK 149
>3r8n_G 30S ribosomal protein S7; protein biosynthesis, RNA, tRNA, transfer
RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia
coli} PDB: 2ykr_G 3oaq_G 3ofa_G 3ofx_G 3ofo_G 3r8o_G
3sfs_G* 3ofp_G 3fih_G* 2wwl_G 3oar_G 3ofb_G 3ofy_G
4a2i_G 2gy9_G 2gyb_G
Length = 151
Score = 68.7 bits (169), Expect = 8e-16
Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 17/142 (11%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPRED-- 71
++ + N LM+ G KK A IV A+E + + ++ ++ A+ N P +
Sbjct: 20 ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVK 75
Query: 72 ATRIGSAG--VVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAK 129
+ R+G + V V++ P+RR A+ + AR+ R K++A LA+EL +AA+
Sbjct: 76 SRRVGGSTYQV----PVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAE 128
Query: 130 GSSNSYAIKKKDEIERVAKANR 151
A+KK++++ R+A+AN+
Sbjct: 129 NKGT--AVKKREDVHRMAEANK 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.37
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 17/41 (41%)
Query: 10 KAQCPIVERLTNSLMMHGRNNGKKLMA-----VLIVKHAME 45
K +++L SL KL A L +K ME
Sbjct: 19 KQA---LKKLQASL---------KLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 2.2
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 18/74 (24%)
Query: 3 YSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHL-LTDQNPIQVIVD 61
Y K + P ERL N+++ + L + K+ +++ + L
Sbjct: 530 Y--KPYICDNDPKYERLVNAILDFLPKIEENL---ICSKY-TDLLRIAL--MAE------ 575
Query: 62 AVINSGPREDATRI 75
+ E+A +
Sbjct: 576 ---DEAIFEEAHKQ 586
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 2.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 122 DELINAAKGSSNSYAIKKKDEIERVAKANR 151
E AK + ++ +++E+ NR
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix}
Length = 161
Score = 26.2 bits (58), Expect = 4.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 27 GRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIG 76
G + G K++A + E+++ Q P QV + AV +ED IG
Sbjct: 30 GHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAV-----QEDVDVIG 74
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 26.2 bits (58), Expect = 5.3
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 56 IQVIVDAVIN 65
+Q I D VIN
Sbjct: 83 VQAIADIVIN 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.362
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,282,961
Number of extensions: 136279
Number of successful extensions: 288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 22
Length of query: 151
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 66
Effective length of database: 4,328,508
Effective search space: 285681528
Effective search space used: 285681528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)