RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044530
(151 letters)
>d1iqva_ a.75.1.1 (A:) Ribosomal protein S7 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 201
Score = 172 bits (438), Expect = 3e-56
Identities = 71/167 (42%), Positives = 95/167 (56%), Gaps = 16/167 (9%)
Query: 1 GRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVLIVKHAM 44
GR++ K F KA IVERL N +M G + N KK+ A +VK A
Sbjct: 35 GRHAKKHFGKANVHIVERLINKVMRSGGSHYKVAGHFMRREHRSLNSKKVRAYEVVKEAF 94
Query: 45 EIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQALYLLTTG 104
+II T +NPIQV+V A+ N+ PRED T + G+ AVDISPLRR++ AL + G
Sbjct: 95 KIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPLRRLDVALRNIALG 154
Query: 105 ARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 151
A +R + AE LA+E+I AA SYA KK EIER+A+++R
Sbjct: 155 ASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAESSR 201
>d1rssa_ a.75.1.1 (A:) Ribosomal protein S7 {Thermus thermophilus
[TaxId: 274]}
Length = 145
Score = 116 bits (291), Expect = 1e-34
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 73
+V N +M G KK +A I A +II T Q P++V AV N PR +
Sbjct: 10 VLVTAFINKIMRDG----KKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRMEVR 65
Query: 74 RIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSN 133
G + +++SP R+ + AL L A R + A +A EL++AA+G
Sbjct: 66 SRRVGGANYQVPMEVSPRRQQSLALRWLVQAAN---QRPERRAAVRIAHELMDAAEG--K 120
Query: 134 SYAIKKKDEIERVAKANR 151
A+KKK+++ER+A+ANR
Sbjct: 121 GGAVKKKEDVERMAEANR 138
>d1husa_ a.75.1.1 (A:) Ribosomal protein S7 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 111 bits (280), Expect = 4e-33
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 9/137 (6%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 73
+V RL N +M+ G KK A I+ A +II T ++P++V A+ N P +
Sbjct: 12 KLVTRLINKIMIDG----KKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPVLEVR 67
Query: 74 RIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSN 133
G + V++ P RRV+ L L AR RN KT+ E LA+E+++AA
Sbjct: 68 ARRVGGANYQVPVEVRPDRRVSLGLRWLVQYAR---LRNEKTMEERLANEIMDAANN--T 122
Query: 134 SYAIKKKDEIERVAKAN 150
A+KK+++ ++A+AN
Sbjct: 123 GAAVKKREDTHKMAEAN 139
>d2qalg1 a.75.1.1 (G:2-151) Ribosomal protein S7 {Escherichia coli
[TaxId: 562]}
Length = 150
Score = 106 bits (266), Expect = 7e-31
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 14 PIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDAT 73
++ + N LM+ G KK A IV A+E + + ++ ++ A+ N P +
Sbjct: 19 ELLAKFVNILMVDG----KKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVK 74
Query: 74 RIGSAGVVRRQAVDISPLRRVNQALYLLTTGARESAFRNIKTIAECLADELINAAKGSSN 133
G + V++ P+RR A+ + AR+ R K++A LA+EL +AA+
Sbjct: 75 SRRVGGSTYQVPVEVRPVRRNALAMRWIVEAARK---RGDKSMALRLANELSDAAEN--K 129
Query: 134 SYAIKKKDEIERVAKANR 151
A+KK++++ R+A+AN+
Sbjct: 130 GTAVKKREDVHRMAEANK 147
>d1hlva2 a.4.1.7 (A:67-131) DNA-binding domain of centromere
binding protein B (CENP-B) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 24.7 bits (54), Expect = 1.6
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 6 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVLIVKHAMEIIHLL 50
K + + +E L + R G + +++ + A+ I L
Sbjct: 1 KTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEEL 45
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 25.5 bits (56), Expect = 3.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 117 AECLADELINAAKGSSNSYAIKKKDEIERVAKA 149
A+ LA L A +G + SY IK + ++ +AK
Sbjct: 94 AKHLAHTLKKAVQGKAASYMIKDRTKLHSIAKR 126
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 25.2 bits (55), Expect = 3.8
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 40 VKHAMEIIHLLTDQNPIQ-VIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAL 98
+ A+EI+ LL I V+VD+V PR + + QA +S R A+
Sbjct: 120 GEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAI 179
Query: 99 Y 99
Sbjct: 180 L 180
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 24.5 bits (53), Expect = 7.0
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 40 VKHAMEIIHLLTDQNPIQ-VIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAL 98
+ A+EI L + ++VD+V P+ + + A R ++QA+
Sbjct: 117 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAA------RMMSQAM 170
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.362
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,406
Number of extensions: 22186
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 11
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.9 bits)