BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044532
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana
GN=AGL61 PE=1 SV=1
Length = 264
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 89/164 (54%), Gaps = 42/164 (25%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GRQKI M +I+ E R +TFSKRR+G++KKASEL TL G+EI I+VFS + KPFSFGHPS
Sbjct: 63 GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122
Query: 68 IEAPVN-----DN-----------------------THPLVEAHRQMRRG-------KET 92
+E+ ++ +N TH L E + ++G KE+
Sbjct: 123 VESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKES 182
Query: 93 QPR----WWETPVNELNHQELLQMDATIDNLHKTF---LARLNE 129
R WWE PV E+N +L +M ++ L KT +A NE
Sbjct: 183 VRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTVVTNMASFNE 226
>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana
GN=AGL62 PE=1 SV=1
Length = 299
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 81/161 (50%), Gaps = 41/161 (25%)
Query: 3 AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
KK+KGRQKI+M +++NE +TFSKRRSG++KKASEL TL G+E+AI+VFS K FS
Sbjct: 2 VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61
Query: 63 FGHPSIEAPVND--NTHPLVEAH------RQMRRGKETQP-------------------- 94
FGHP++++ ++ N +PL R+ RR Q
Sbjct: 62 FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121
Query: 95 -------------RWWETPVNELNHQELLQMDATIDNLHKT 122
WWE PV EL +L ++NL K
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKV 162
>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15
PE=3 SV=1
Length = 264
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN + R +TFSKRR+G+ KKA EL L +E+A++VFS+SGK F F S
Sbjct: 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTS 61
Query: 68 I 68
+
Sbjct: 62 M 62
>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana
GN=AGL15 PE=1 SV=1
Length = 268
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 44/56 (78%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
GR KI++KRIEN + R +TFSKRRSG+ KKA EL L +E+A++VFS+SGK F +
Sbjct: 2 GRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEY 57
>sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana
GN=AGL6 PE=1 SV=2
Length = 252
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR +++MKRIEN+ R +TFSKRR+G+ KKA EL L +E+A+++FS GK + FG
Sbjct: 2 GRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVG 61
Query: 68 IEAPV 72
IE+ +
Sbjct: 62 IESTI 66
>sp|Q07472|MADS1_PETHY Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2
SV=1
Length = 231
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 24/132 (18%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
R KIQ+KRIEN+ R +T+SKRR+G++KKA+EL L ++++I++ S +GK F PS
Sbjct: 2 ARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPS 61
Query: 68 IEA---------------------PVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNH 106
I + + L E +R +R KE + R E+ +N+LN+
Sbjct: 62 ITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLR--KEIRQRMGES-LNDLNY 118
Query: 107 QELLQMDATIDN 118
++L ++ +DN
Sbjct: 119 EQLEELMENVDN 130
>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica
GN=MADS1 PE=1 SV=1
Length = 257
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR K+++KRIEN+ R +TF+KRR+G+ KKA EL L +E+A+++FS G+ F F S
Sbjct: 2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKT 122
+ +E +R + P NE+N+QE L++ ++ L T
Sbjct: 62 C-------MYKTLERYRSCNYNSQDAA----APENEINYQEYLKLKTRVEFLQTT 105
>sp|A2XDY1|MADS1_ORYSI MADS-box transcription factor 1 OS=Oryza sativa subsp. indica
GN=MADS1 PE=2 SV=2
Length = 257
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR K+++KRIEN+ R +TF+KRR+G+ KKA EL L +E+A+++FS G+ F F S
Sbjct: 2 GRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKT 122
+ +E +R + P NE+N+QE L++ ++ L T
Sbjct: 62 C-------MYKTLERYRSCNYNSQDAA----APENEINYQEYLKLKTRVEFLQTT 105
>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica
GN=MADS23 PE=2 SV=1
Length = 159
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRI+N R +TFSKRRSG++KKA EL L +E+ +LVFS + + + F S
Sbjct: 2 GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQ 107
+++ + + H+ M E + W+ L Q
Sbjct: 62 MKSIIERYNETKEDPHQTMNASSE--AKLWQQEAASLRQQ 99
>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica
GN=MADS6 PE=1 SV=1
Length = 250
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++++KRIEN+ R +TFSKRR+G+ KKA EL L +E+A+++FS GK + FG
Sbjct: 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWW 97
I + H A ETQ W+
Sbjct: 62 ITKTLERYQHCCYNAQDSNNALSETQS-WY 90
>sp|Q8GTF4|AP1C_BRAOB Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
botrytis GN=AP1C PE=2 SV=1
Length = 256
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G++KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|B4YPV4|AP1C_BRAOA Floral homeotic protein APETALA 1 C OS=Brassica oleracea var.
alboglabra GN=AP1C PE=3 SV=1
Length = 256
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G++KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q96355|1AP1_BRAOT Floral homeotic protein APETALA 1-1 OS=Brassica oleracea var.
italica GN=1AP1 PE=2 SV=1
Length = 256
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G++KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q43585|AG_TOBAC Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2
SV=1
Length = 248
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 27/137 (19%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 77
Query: 68 IEAPV---------NDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDN 118
++A + + NT + EA+ Q +++ QE ++ A I N
Sbjct: 78 VKATIERYKKACSDSSNTGSISEANAQ----------YYQ--------QEASKLRAQIGN 119
Query: 119 LHKTFLARLNEKTAAAS 135
L L E AA S
Sbjct: 120 LQNQNRNMLGESLAALS 136
>sp|Q40885|AG_PETHY Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=1 SV=1
Length = 242
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 54/87 (62%), Gaps = 9/87 (10%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 77
Query: 68 IEAPV---------NDNTHPLVEAHRQ 85
++A + + NT + EA+ Q
Sbjct: 78 VKATIERYKKACSDSSNTGSIAEANAQ 104
>sp|P0DI14|AP1_BRARP Floral homeotic protein APETALA 1 OS=Brassica rapa subsp.
pekinensis GN=AP1 PE=3 SV=1
Length = 256
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G++KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1
Length = 233
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 13/131 (9%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++++KRIEN+ R +TF+KRR+G+ KKA EL L +E+A++VFS GK + F S
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRG--KETQPRWWETPVNELNHQELLQMDATIDNLHKTFLA 125
+ +E +++ G + +QP + E ++QE L++ A +D L ++
Sbjct: 62 C-------MNKTLERYQRCSYGSLETSQP----SKETESSYQEYLKLKAKVDVLQRSHRN 110
Query: 126 RLNEKTAAASS 136
L E S+
Sbjct: 111 LLGEDLGELST 121
>sp|P48007|PIST_ARATH Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI
PE=1 SV=1
Length = 208
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 47/62 (75%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN + R++TFSKRR+G+ KKA E+ L +++A+++F+ +GK + PS
Sbjct: 2 GRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPS 61
Query: 68 IE 69
++
Sbjct: 62 MD 63
>sp|Q40170|AGL8_SOLLC Agamous-like MADS-box protein AGL8 homolog OS=Solanum
lycopersicum GN=TDR4 PE=2 SV=1
Length = 227
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRRSG+ KKA E+ L +E+ ++VFS GK F + + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWW 97
+ + A +Q+ T P W
Sbjct: 62 CMERILERYERYSFAEKQLVPTDHTSPVSW 91
>sp|Q42429|AGL8_SOLTU Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum
PE=2 SV=1
Length = 250
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRRSG+ KKA E+ L +E+ ++VFS GK F + + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWW 97
+ + A RQ+ T P W
Sbjct: 62 CMERLLERYERYSFAERQLVPTDHTSPGSW 91
>sp|Q2V0P1|MAD58_ORYSJ MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica
GN=MADS58 PE=2 SV=1
Length = 272
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 3 AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
A+K R KI++KRIEN R +TF KRRSG+ KKA EL L +E+A++VFS G+ +
Sbjct: 39 AEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYE 98
Query: 63 FGHPSIEAPV---------NDNTHPLVEAHRQMRRGKETQPRWWET------------PV 101
+ + S++ + N + E + Q + + + + T +
Sbjct: 99 YSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNI 158
Query: 102 NELNHQELLQMDATIDNLHKTFLARLNEKTAA 133
+NH+EL Q++ +D AR NE A
Sbjct: 159 TTMNHRELKQLEGRLDKGLGKIRARKNELLCA 190
>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica
GN=MADS3 PE=2 SV=1
Length = 236
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + + + S
Sbjct: 2 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 61
Query: 68 IEAPV 72
+++ V
Sbjct: 62 VKSTV 66
>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1
PE=2 SV=1
Length = 248
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 46/65 (70%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + + + S
Sbjct: 18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNS 77
Query: 68 IEAPV 72
++A +
Sbjct: 78 VKATI 82
>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1
PE=2 SV=1
Length = 256
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFG-HP 66
GR ++Q+KRIEN+ R +TFSKRR+G++KKA E+ L +E+A++VFS GK F + P
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTDP 61
Query: 67 SIE 69
+E
Sbjct: 62 CME 64
>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1
Length = 252
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 9/113 (7%)
Query: 4 KKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSF 63
++ GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + +
Sbjct: 14 QRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY 73
Query: 64 GHPSIEAPV---------NDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQ 107
+ S++ + N NT + E + Q + + + R + N Q
Sbjct: 74 SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQ 126
>sp|Q41276|AP1_SINAL Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2
SV=1
Length = 254
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|D7KWY6|AP1_ARALL Floral homeotic protein APETALA 1 OS=Arabidopsis lyrata subsp.
lyrata GN=AP1 PE=3 SV=1
Length = 256
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica
GN=MADS7 PE=1 SV=2
Length = 249
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++++KRIEN+ R +TF+KRR+G+ KKA EL L +E+A+++FS GK + F
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF---- 57
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKT 122
T L + + G ET + E+ + + E L++ A ++NL +T
Sbjct: 58 --CSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRT 110
>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica
GN=MADS7 PE=2 SV=2
Length = 249
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++++KRIEN+ R +TF+KRR+G+ KKA EL L +E+A+++FS GK + F
Sbjct: 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF---- 57
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQELLQMDATIDNLHKT 122
T L + + G ET + E+ + + E L++ A ++NL +T
Sbjct: 58 --CSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRT 110
>sp|Q8GTF5|AP1A_BRAOB Floral homeotic protein APETALA 1 A OS=Brassica oleracea var.
botrytis GN=AP1A PE=2 SV=1
Length = 256
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|B4YPW6|AP1A_BRAOA Floral homeotic protein APETALA 1 A OS=Brassica oleracea var.
alboglabra GN=AP1A PE=3 SV=1
Length = 256
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q96356|2AP1_BRAOT Floral homeotic protein APETALA 1-2 OS=Brassica oleracea var.
italica GN=2AP1 PE=2 SV=1
Length = 256
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|D7KQR8|CAL_ARALL Transcription factor CAULIFLOWER OS=Arabidopsis lyrata subsp.
lyrata GN=CAL PE=3 SV=1
Length = 256
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E++++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYTSES 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
V + A RQ+
Sbjct: 62 CMEKVLERYERYSYAERQL 80
>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica
GN=MADS2 PE=2 SV=1
Length = 209
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 42/59 (71%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHP 66
GR KI++KRIEN R +TFSKRRSGI KKA E+ L +E+ +++FS +GK + + P
Sbjct: 2 GRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60
>sp|P35631|AP1_ARATH Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1
PE=1 SV=2
Length = 256
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q10CQ1|MAD14_ORYSJ MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica
GN=MADS14 PE=1 SV=2
Length = 246
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR K+Q+KRIEN+ R +TFSKRRSG+ KKA+E+ L +E+A+++FS GK + + S
Sbjct: 2 GRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDS 61
Query: 68 I 68
Sbjct: 62 C 62
>sp|A2IB53|AP1_CITSI Floral homeotic protein APETALA 1 OS=Citrus sinensis GN=AP1 PE=2
SV=1
Length = 256
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRR+G+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQM 86
+ + A RQ+
Sbjct: 62 CMEKILERYERYSYAERQL 80
>sp|Q7XUN2|MAD17_ORYSJ MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica
GN=MADS17 PE=1 SV=2
Length = 249
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++++KRIEN+ R +TFSKRR+G+ KKA EL L +E+A+++FS GK + FG
Sbjct: 2 GRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 61
Query: 68 I 68
I
Sbjct: 62 I 62
>sp|Q38876|AGL8_ARATH Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana
GN=AGL8 PE=1 SV=1
Length = 242
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 53/90 (58%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRRSG+ KKA E+ L +E+A++VFS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWW 97
+ + + + +Q+ +Q W
Sbjct: 62 CMERILERYDRYLYSDKQLVGRDVSQSENW 91
>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1
Length = 259
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TFSKRR G+ KKA+EL L + + +++FS +GK F + P+
Sbjct: 2 GRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPA 61
Query: 68 I 68
Sbjct: 62 C 62
>sp|Q38836|AGL11_ARATH Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana
GN=AGL11 PE=1 SV=1
Length = 230
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + + + +
Sbjct: 2 GRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNN 61
Query: 68 IEAPV 72
I + +
Sbjct: 62 IRSTI 66
>sp|Q6R4R6|CALD_BRAOB Truncated transcription factor CAULIFLOWER D OS=Brassica oleracea
var. botrytis GN=CAL-D PE=2 SV=1
Length = 148
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR +++MKRIEN+ R +TFSKRR+G+ KKA E+ L +E++++VFS GK F + S
Sbjct: 2 GRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSSES 61
Query: 68 IEAPVNDNTHPLVEAHRQMR 87
V + A +Q++
Sbjct: 62 CMEKVLERYERYSYAEKQLK 81
>sp|P17839|AG_ARATH Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1
SV=2
Length = 252
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 5 KTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFG 64
+ GR KI++KRIEN R +TF KRR+G+ KKA EL L +E+A++VFS G+ + +
Sbjct: 15 RKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS 74
Query: 65 HPSIEAPV---------NDNTHPLVEAHRQMRRGKETQPRWWETPVNELNHQ 107
+ S++ + N NT + E + Q + + + R + N Q
Sbjct: 75 NNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQ 126
>sp|Q41274|AGL8_SINAL Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba
GN=AGL8 PE=2 SV=1
Length = 241
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR ++Q+KRIEN+ R +TFSKRRSG+ KKA E+ L +E+A+++FS GK F + S
Sbjct: 2 GRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDS 61
Query: 68 IEAPVNDNTHPLVEAHRQMRRGKETQPRWW 97
+ + + + +Q+ +Q W
Sbjct: 62 CMEKILERYDRYLYSDKQLVGRDISQSENW 91
>sp|Q6R4R9|CALA_BRAOB Truncated transcription factor CAULIFLOWER A OS=Brassica oleracea
var. botrytis GN=CAL-A PE=2 SV=2
Length = 150
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR +++MKRIEN+ R +TFSKRR+G+ KKA E+ L +E++++VFS GK F + S
Sbjct: 2 GRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSSES 61
Query: 68 IEAPVNDNTHPLVEAHRQMR 87
V + A +Q++
Sbjct: 62 CMEKVLERYERYSYAEKQLK 81
>sp|P0C5B1|MAD14_ORYSI MADS-box transcription factor 14 OS=Oryza sativa subsp. indica
GN=MADS14 PE=2 SV=1
Length = 246
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 43/61 (70%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR K+Q+KRIEN R +TFSKRRSG+ KKA+E+ L +E+A+++FS GK + + S
Sbjct: 2 GRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDS 61
Query: 68 I 68
Sbjct: 62 C 62
>sp|Q24535|SRF_DROME Serum response factor homolog OS=Drosophila melanogaster GN=bs PE=1
SV=2
Length = 449
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 47/61 (77%)
Query: 3 AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFS 62
KKTKGR KI+M+ I+N+ R TFSKR++GI KKA EL TLTG+++ +LV S++G ++
Sbjct: 161 GKKTKGRVKIKMEYIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVMLLVASETGHVYT 220
Query: 63 F 63
F
Sbjct: 221 F 221
>sp|Q6R4R7|CALC_BRAOB Truncated transcription factor CAULIFLOWER C OS=Brassica oleracea
var. botrytis GN=CAL-C PE=2 SV=1
Length = 148
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR +++MKRIEN+ R +TFSKRR+G+ KKA E+ L +E++++VFS GK F + S
Sbjct: 2 GRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSSES 61
Query: 68 IEAPVNDNTHPLVEAHRQMR 87
V + A +Q++
Sbjct: 62 CMEKVLERYERYSYAEKQLK 81
>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica
GN=MADS29 PE=2 SV=1
Length = 260
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 42/61 (68%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +TFSKRR G+ KKA+EL L + + +++FS +GK F + P+
Sbjct: 2 GRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPT 61
Query: 68 I 68
Sbjct: 62 C 62
>sp|Q944S9|MAD16_ORYSJ MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica
GN=MADS16 PE=1 SV=2
Length = 224
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 44/62 (70%)
Query: 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPS 67
GR KI++KRIEN R +T+SKRR+GI KKA EL L +++AI++FS +GK F PS
Sbjct: 2 GRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPS 61
Query: 68 IE 69
+
Sbjct: 62 TD 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,083,594
Number of Sequences: 539616
Number of extensions: 1942707
Number of successful extensions: 5830
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5651
Number of HSP's gapped (non-prelim): 181
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)