Query 044532
Match_columns 147
No_of_seqs 115 out of 1173
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 06:46:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hbx_A SRF, serum response fac 100.0 1.3E-37 4.5E-42 210.1 -2.0 75 2-76 5-79 (92)
2 1mnm_A Protein (MCM1 transcrip 100.0 2.8E-37 9.7E-42 211.0 -2.5 80 3-82 12-92 (100)
3 1k6o_B SRF, serum response fac 100.0 6.6E-37 2.3E-41 210.4 -1.7 75 2-76 4-78 (103)
4 1egw_A MADS box transcription 100.0 6.8E-37 2.3E-41 201.0 -4.0 69 8-76 1-69 (77)
5 3p57_A Myocyte-specific enhanc 100.0 2E-36 6.9E-41 203.5 -4.3 69 8-76 1-69 (90)
6 2l5g_B Putative uncharacterize 52.3 21 0.00073 19.8 3.5 30 103-132 1-30 (42)
7 2dl1_A Spartin; SPG20, MIT, st 46.0 67 0.0023 21.7 6.3 39 97-135 61-99 (116)
8 1p9i_A Cortexillin I/GCN4 hybr 40.9 35 0.0012 17.1 3.3 25 107-131 2-26 (31)
9 3tso_C RAB11 family-interactin 36.8 77 0.0026 19.8 5.1 30 101-130 11-40 (75)
10 3nrf_A APAG protein; structura 36.5 8.2 0.00028 25.9 0.2 40 17-61 21-60 (106)
11 1j1d_B Troponin T, TNT; THIN f 35.0 47 0.0016 22.1 3.8 28 100-127 38-65 (106)
12 1ytz_T Troponin T; muscle, THI 34.4 48 0.0016 22.1 3.8 28 100-127 38-65 (107)
13 3fx7_A Putative uncharacterize 34.1 78 0.0027 20.6 4.7 30 104-133 6-35 (94)
14 2lfw_A PHYR sigma-like domain; 33.6 70 0.0024 21.6 4.8 47 100-146 106-156 (157)
15 1j1d_C Troponin I, TNI; THIN f 33.4 94 0.0032 21.5 5.3 28 100-127 54-81 (133)
16 1lj9_A Transcriptional regulat 31.9 97 0.0033 19.9 5.2 32 100-131 111-142 (144)
17 1g6u_A Domain swapped dimer; d 31.2 69 0.0024 17.6 5.0 28 102-129 15-45 (48)
18 2zvv_Y Cyclin-dependent kinase 31.0 13 0.00046 18.2 0.4 12 21-32 15-26 (26)
19 1i2h_A PSD-ZIP45(homer-1C/VESL 27.3 96 0.0033 22.2 4.7 38 101-138 93-130 (168)
20 2ky6_A Mediator of RNA polymer 27.2 36 0.0012 24.5 2.3 20 42-61 116-135 (166)
21 3qks_A DNA double-strand break 27.0 39 0.0013 24.2 2.6 30 109-138 166-195 (203)
22 2hv8_D RAB11 family-interactin 26.4 1.1E+02 0.0038 18.4 5.3 33 99-131 18-50 (64)
23 1txp_A HnRNP C, heterogeneous 25.1 74 0.0025 16.0 3.3 18 107-124 6-23 (28)
24 3kp7_A Transcriptional regulat 22.9 1.1E+02 0.0037 20.0 4.2 31 98-128 119-149 (151)
25 1j1e_C Troponin I, TNI; THIN f 22.2 2.3E+02 0.0078 20.5 7.0 27 100-126 54-80 (180)
26 2fbh_A Transcriptional regulat 22.0 72 0.0025 20.6 3.0 25 101-125 121-145 (146)
27 3fxd_A Protein ICMQ; helix bun 21.7 1.1E+02 0.0039 17.9 3.4 21 102-122 3-23 (57)
28 3gpv_A Transcriptional regulat 21.5 91 0.0031 21.3 3.5 20 36-55 17-36 (148)
29 1zps_A PRA-CH, phosphoribosyl- 20.9 39 0.0013 23.6 1.4 37 24-60 56-101 (138)
30 4aik_A Transcriptional regulat 20.8 1.2E+02 0.0041 20.3 4.1 25 100-124 114-138 (151)
31 4gip_A Fusion glycoprotein F2; 20.3 1.7E+02 0.0059 18.4 4.4 37 98-134 39-75 (81)
32 3hmu_A Aminotransferase, class 20.0 1.6E+02 0.0055 23.7 5.3 33 103-135 432-464 (472)
No 1
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.3e-37 Score=210.07 Aligned_cols=75 Identities=44% Similarity=0.685 Sum_probs=72.4
Q ss_pred CcccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532 2 AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT 76 (147)
Q Consensus 2 ~~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~ 76 (147)
.+|++|||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|+|++|+++.||++|.
T Consensus 5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=2.8e-37 Score=211.04 Aligned_cols=80 Identities=43% Similarity=0.656 Sum_probs=72.5
Q ss_pred cccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCCC-chHH
Q 044532 3 AKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNTH-PLVE 81 (147)
Q Consensus 3 ~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~~-~l~~ 81 (147)
++++|||+||+|++|+|+.+|++||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|.. .||+
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~~lw~ 91 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRNLIQ 91 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHHHHHH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCCcHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999963 3444
Q ss_pred H
Q 044532 82 A 82 (147)
Q Consensus 82 ~ 82 (147)
.
T Consensus 92 ~ 92 (100)
T 1mnm_A 92 A 92 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=6.6e-37 Score=210.40 Aligned_cols=75 Identities=44% Similarity=0.685 Sum_probs=71.9
Q ss_pred CcccCCCcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532 2 AAKKTKGRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT 76 (147)
Q Consensus 2 ~~k~~mgR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~ 76 (147)
.+|++|||+||+|++|+|+..|++||+||+.||||||+||||||||+||||||||+|++|+|++|+++.||+++.
T Consensus 4 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~~ 78 (103)
T 1k6o_B 4 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 78 (103)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSHH
T ss_pred CCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhhh
Confidence 368899999999999999999999999999999999999999999999999999999999999999999999864
No 4
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=6.8e-37 Score=200.96 Aligned_cols=69 Identities=41% Similarity=0.658 Sum_probs=67.9
Q ss_pred CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT 76 (147)
Q Consensus 8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~ 76 (147)
||+||+|++|+|+++|++||+|||+||||||+||||||||+||+|||||+|++|+|++|+++.|++||+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~ 69 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT 69 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHH
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999995
No 5
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2e-36 Score=203.51 Aligned_cols=69 Identities=41% Similarity=0.658 Sum_probs=68.0
Q ss_pred CcccceeEEecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCcccCCCCCCCCcccCC
Q 044532 8 GRQKIQMKRIENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPFSFGHPSIEAPVNDNT 76 (147)
Q Consensus 8 gR~Ki~ik~I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~~~~~psv~~vi~ry~ 76 (147)
||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|+|++|+++.||+||+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~ 69 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT 69 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHH
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999995
No 6
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.28 E-value=21 Score=19.82 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044532 103 ELNHQELLQMDATIDNLHKTFLARLNEKTA 132 (147)
Q Consensus 103 ~l~~~eL~~l~~~Le~~l~~v~~r~~~l~~ 132 (147)
+++-+||-+=.+.++.-+..++++|..|+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888888888888887763
No 7
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.96 E-value=67 Score=21.73 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=32.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 044532 97 WETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAAS 135 (147)
Q Consensus 97 ~~~~l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~ 135 (147)
++++-.+-..++.++|...+...+..|+.|+..|.....
T Consensus 61 ~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~~ 99 (116)
T 2dl1_A 61 KESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLA 99 (116)
T ss_dssp CCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344456778899999999999999999999999976554
No 8
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=40.92 E-value=35 Score=17.11 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044532 107 QELLQMDATIDNLHKTFLARLNEKT 131 (147)
Q Consensus 107 ~eL~~l~~~Le~~l~~v~~r~~~l~ 131 (147)
++|..|...|+.--+.+..+.++|.
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887777877777765
No 9
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=36.79 E-value=77 Score=19.78 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044532 101 VNELNHQELLQMDATIDNLHKTFLARLNEK 130 (147)
Q Consensus 101 l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l 130 (147)
..+++.+||.++.-.++..+..-..++.+|
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~v~eL 40 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTHIREL 40 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666555555554444444444443
No 10
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=36.46 E-value=8.2 Score=25.89 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=31.0
Q ss_pred ecCCCCcceeccccccchhhhhhhhhhcccccEeEEEeeCCCCCc
Q 044532 17 IENEDGRLITFSKRRSGIYKKASELVTLTGSEIAILVFSQSGKPF 61 (147)
Q Consensus 17 I~~~~~R~~Tf~KRk~GL~KKa~ELs~LC~~~v~~iv~sp~gk~~ 61 (147)
|.++.....||.=.-..|.++.-+|+.+ |++.|+|+|+-|
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEE
Confidence 4455556677777888899999999965 599999999754
No 11
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=34.96 E-value=47 Score=22.06 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044532 100 PVNELNHQELLQMDATIDNLHKTFLARL 127 (147)
Q Consensus 100 ~l~~l~~~eL~~l~~~Le~~l~~v~~r~ 127 (147)
++++|+.++|+++...|-+.+..+.+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEK 65 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEK 65 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 5899999999999888877777766554
No 12
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=34.39 E-value=48 Score=22.07 Aligned_cols=28 Identities=11% Similarity=0.121 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044532 100 PVNELNHQELLQMDATIDNLHKTFLARL 127 (147)
Q Consensus 100 ~l~~l~~~eL~~l~~~Le~~l~~v~~r~ 127 (147)
++++|+.++|+++...|-+.+..+.+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEK 65 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEK 65 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999888877777765554
No 13
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=34.08 E-value=78 Score=20.59 Aligned_cols=30 Identities=7% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 044532 104 LNHQELLQMDATIDNLHKTFLARLNEKTAA 133 (147)
Q Consensus 104 l~~~eL~~l~~~Le~~l~~v~~r~~~l~~~ 133 (147)
.+++||+.|...|+.-...+++....|..+
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~ 35 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNH 35 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888887643
No 14
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=33.58 E-value=70 Score=21.59 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCC
Q 044532 100 PVNELNHQELLQM----DATIDNLHKTFLARLNEKTAAASSSMAPPMYFHH 146 (147)
Q Consensus 100 ~l~~l~~~eL~~l----~~~Le~~l~~v~~r~~~l~~~~~ss~~~~~~~~h 146 (147)
.+++++.+|+-+. ...+...+...+.++...........-++.++||
T Consensus 106 ~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~~~~~~~~~~~~ 156 (157)
T 2lfw_A 106 AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALELVPRGSHHHHH 156 (157)
T ss_dssp SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCCCCCCCCCCSSC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcCC
Confidence 4677888887776 3455555555666666555555555555555555
No 15
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=33.40 E-value=94 Score=21.47 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044532 100 PVNELNHQELLQMDATIDNLHKTFLARL 127 (147)
Q Consensus 100 ~l~~l~~~eL~~l~~~Le~~l~~v~~r~ 127 (147)
+++++|.++|+++...|-+.+..+.+-.
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEK 81 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEER 81 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999888777766665444
No 16
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=31.87 E-value=97 Score=19.95 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044532 100 PVNELNHQELLQMDATIDNLHKTFLARLNEKT 131 (147)
Q Consensus 100 ~l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l~ 131 (147)
-+++++.+|+..|...|+.....+...+++..
T Consensus 111 ~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~~k 142 (144)
T 1lj9_A 111 ALQGLSEVEISQLADYLVRMRKNVSEDWEFVK 142 (144)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhHHHHHHhcc
Confidence 35688999999999999999988887776543
No 17
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=31.18 E-value=69 Score=17.57 Aligned_cols=28 Identities=14% Similarity=0.363 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHH---HHHHHHHHHH
Q 044532 102 NELNHQELLQMDATIDNL---HKTFLARLNE 129 (147)
Q Consensus 102 ~~l~~~eL~~l~~~Le~~---l~~v~~r~~~ 129 (147)
++.+.+||..|+..|... +..+..++..
T Consensus 15 egfspeelaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888887655444 4444444433
No 18
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=30.95 E-value=13 Score=18.21 Aligned_cols=12 Identities=25% Similarity=0.351 Sum_probs=8.8
Q ss_pred CCcceecccccc
Q 044532 21 DGRLITFSKRRS 32 (147)
Q Consensus 21 ~~R~~Tf~KRk~ 32 (147)
+.|++.|.+|++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 567778888874
No 19
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=27.32 E-value=96 Score=22.24 Aligned_cols=38 Identities=3% Similarity=0.020 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 044532 101 VNELNHQELLQMDATIDNLHKTFLARLNEKTAAASSSM 138 (147)
Q Consensus 101 l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~ss~ 138 (147)
|+--+.+|+..|...+++.++.+..-.+.++....+++
T Consensus 93 LnF~Se~eA~~F~~~~~~ale~l~~~~~~~~~~~~~~~ 130 (168)
T 1i2h_A 93 LGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEKMELTS 130 (168)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCC
T ss_pred eccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence 35569999999999999999999988887776554433
No 20
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=27.15 E-value=36 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.7
Q ss_pred hhcccccEeEEEeeCCCCCc
Q 044532 42 VTLTGSEIAILVFSQSGKPF 61 (147)
Q Consensus 42 s~LC~~~v~~iv~sp~gk~~ 61 (147)
+.-|++.|-+++|||+-+.|
T Consensus 116 ~~~ceiKvLiLlYs~~k~af 135 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIF 135 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSE
T ss_pred CCCcceEEEEEEEcCCccee
Confidence 45699999999999987765
No 21
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=27.03 E-value=39 Score=24.18 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Q 044532 109 LLQMDATIDNLHKTFLARLNEKTAAASSSM 138 (147)
Q Consensus 109 L~~l~~~Le~~l~~v~~r~~~l~~~~~ss~ 138 (147)
+.++.+.+.+.++.+..+++.+.......+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 195 (203)
T 3qks_A 166 FETAYKKLSELKKTINNRIKEYRDILARTE 195 (203)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345556666677777777777765444333
No 22
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=26.44 E-value=1.1e+02 Score=18.41 Aligned_cols=33 Identities=6% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044532 99 TPVNELNHQELLQMDATIDNLHKTFLARLNEKT 131 (147)
Q Consensus 99 ~~l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l~ 131 (147)
..++++|.+||.+....-++....+++-|+.|.
T Consensus 18 ae~~~~s~deL~~~l~eqee~n~~Le~YID~LL 50 (64)
T 2hv8_D 18 AEISSVSRDELMEAIQKQEEINFRLQDYIDRII 50 (64)
T ss_dssp TTCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888887776666666666666666654
No 23
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=25.06 E-value=74 Score=15.95 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044532 107 QELLQMDATIDNLHKTFL 124 (147)
Q Consensus 107 ~eL~~l~~~Le~~l~~v~ 124 (147)
.||.++...+|.++.++.
T Consensus 6 kELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 577777777777776654
No 24
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=22.93 E-value=1.1e+02 Score=20.02 Aligned_cols=31 Identities=3% Similarity=0.163 Sum_probs=24.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044532 98 ETPVNELNHQELLQMDATIDNLHKTFLARLN 128 (147)
Q Consensus 98 ~~~l~~l~~~eL~~l~~~Le~~l~~v~~r~~ 128 (147)
..-+++++.+|+..|...|+.....+.+-..
T Consensus 119 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 149 (151)
T 3kp7_A 119 SDMTSDFDSKEIEKVRQVLEIIDYRIQSYTS 149 (151)
T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999988887766443
No 25
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=22.17 E-value=2.3e+02 Score=20.54 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044532 100 PVNELNHQELLQMDATIDNLHKTFLAR 126 (147)
Q Consensus 100 ~l~~l~~~eL~~l~~~Le~~l~~v~~r 126 (147)
++++|+.++|+++...|-..+..+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988777766665444
No 26
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.00 E-value=72 Score=20.59 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 044532 101 VNELNHQELLQMDATIDNLHKTFLA 125 (147)
Q Consensus 101 l~~l~~~eL~~l~~~Le~~l~~v~~ 125 (147)
+++++.+|+..|...|+.....+..
T Consensus 121 ~~~l~~~e~~~l~~~l~~l~~~l~~ 145 (146)
T 2fbh_A 121 LTGIDESEQALCQQVLLRILANLEN 145 (146)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 5678999999999999888777654
No 27
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=21.70 E-value=1.1e+02 Score=17.92 Aligned_cols=21 Identities=5% Similarity=0.185 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 044532 102 NELNHQELLQMDATIDNLHKT 122 (147)
Q Consensus 102 ~~l~~~eL~~l~~~Le~~l~~ 122 (147)
+.|+.++...+..+|++.+..
T Consensus 3 d~lt~eq~~aILkaLdeaIe~ 23 (57)
T 3fxd_A 3 DQLSDEQKETILKALNDAIEK 23 (57)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHc
Confidence 567888888888888876543
No 28
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.53 E-value=91 Score=21.34 Aligned_cols=20 Identities=5% Similarity=0.130 Sum_probs=15.6
Q ss_pred hhhhhhhhcccccEeEEEee
Q 044532 36 KKASELVTLTGSEIAILVFS 55 (147)
Q Consensus 36 KKa~ELs~LC~~~v~~iv~s 55 (147)
=+.+|+|-+||+.+-.|-|=
T Consensus 17 ~~I~evA~~~gvs~~tLR~Y 36 (148)
T 3gpv_A 17 YTIGQVAKMQHLTISQIRYY 36 (148)
T ss_dssp BCHHHHHHHTTCCHHHHHHH
T ss_pred eeHHHHHHHHCcCHHHHHHH
Confidence 36789999999988776543
No 29
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=20.92 E-value=39 Score=23.65 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=27.9
Q ss_pred ceeccccccchhh---------hhhhhhhcccccEeEEEeeCCCCC
Q 044532 24 LITFSKRRSGIYK---------KASELVTLTGSEIAILVFSQSGKP 60 (147)
Q Consensus 24 ~~Tf~KRk~GL~K---------Ka~ELs~LC~~~v~~iv~sp~gk~ 60 (147)
..-||+=|..|.. ++.|+.+-||.++-++..-|.|..
T Consensus 56 ~~y~SRSR~~LW~KGetSG~~Q~v~~i~~DCD~D~LL~~V~q~G~a 101 (138)
T 1zps_A 56 AHYWSTSRGKLWLKGESSGHVQRVKDVLVDCDGDAVVLKVEQEGGA 101 (138)
T ss_dssp CEEEETTTTEEEETTTTTSCCEEEEEEEECTTSSEEEEEEEESSCS
T ss_pred EEEEcCCCCccccCccCCCCcEEEEEEEecCCCCEEEEEEEecCCc
Confidence 3344766665554 556899999999999999998853
No 30
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=20.80 E-value=1.2e+02 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=19.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q 044532 100 PVNELNHQELLQMDATIDNLHKTFL 124 (147)
Q Consensus 100 ~l~~l~~~eL~~l~~~Le~~l~~v~ 124 (147)
-+.+++.+|+..|...|+....++.
T Consensus 114 ~~~~l~~ee~~~l~~~L~kl~~nl~ 138 (151)
T 4aik_A 114 ILGGISSDEIAVLSGLIDKLEKNII 138 (151)
T ss_dssp HTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3678899999998888777666554
No 31
>4gip_A Fusion glycoprotein F2; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=20.32 E-value=1.7e+02 Score=18.41 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 044532 98 ETPVNELNHQELLQMDATIDNLHKTFLARLNEKTAAA 134 (147)
Q Consensus 98 ~~~l~~l~~~eL~~l~~~Le~~l~~v~~r~~~l~~~~ 134 (147)
+.++++.+..++.+....|...|.=+++-++.++.+-
T Consensus 39 ~~~~~~C~~~~v~~Ynktlt~lL~Pi~daL~~I~~~~ 75 (81)
T 4gip_A 39 DSPISGCNITSISSYNATVTKLLQPIGENLETIRNQL 75 (81)
T ss_dssp CSCBCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4568999999999999999999999999999887653
No 32
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=20.05 E-value=1.6e+02 Score=23.66 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 044532 103 ELNHQELLQMDATIDNLHKTFLARLNEKTAAAS 135 (147)
Q Consensus 103 ~l~~~eL~~l~~~Le~~l~~v~~r~~~l~~~~~ 135 (147)
..+.+|+.++...|++.+..+.+.+.......+
T Consensus 432 ~~t~e~i~~~l~~l~~~l~~~~~~~~~~~~~~~ 464 (472)
T 3hmu_A 432 VITPAEIDEMFVRIRKSLDEAQAEIEKQGLMKS 464 (472)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCB
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 568999999999999998888765544333333
Done!