BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044534
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AC1|A Chain A, Crystal Structure Of A Cell-Wall Invertase From
Arabidopsis Thaliana
Length = 541
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 5/286 (1%)
Query: 47 WINDKGL-IDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQ 105
++ D G +DG A +YDYGK+YASKTFFDSAKNRRILWGW NES SV DD++KGW+G+Q
Sbjct: 258 FVPDNGFKMDGTAP-RYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQ 316
Query: 106 AIPRNIYLDGSGKQLVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEIT 165
IPR I+LD SGKQL+QWPV E+E+LR+ N+ +K L++G EV GVTAAQADVE+
Sbjct: 317 TIPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVL 376
Query: 166 FEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK- 224
F++ D+ KA+ P WT Q +C+ N SV+ GLGPFGL VLAS + +EYTSV+FR+FK
Sbjct: 377 FKVRDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKA 436
Query: 225 -KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSG 283
+ NK VVLMCSDQSRSSL EDNDKTTYGAFVD++P + LSLR+LIDHS+VESFGG G
Sbjct: 437 RQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINP-HQPLSLRALIDHSVVESFGGKG 495
Query: 284 RACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQIS 329
RACIT+RVYP AI + L+AFN + V + L+AWSM AQIS
Sbjct: 496 RACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSAQIS 541
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 33 QPYRTGYHFQPPWHWINDKGLIDGDAGLKYDYGKFY 68
QPYRTG+HFQPP +W+ND +G K Y FY
Sbjct: 6 QPYRTGFHFQPPKNWMNDP---NGPMIYKGIYHLFY 38
>pdb|2QQW|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D23a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 5/286 (1%)
Query: 47 WINDKGL-IDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQ 105
++ D G +DG A +YDYGK+YASKTFFDSAKNRRILWGW NES SV DD++KGW+G+Q
Sbjct: 254 FVPDNGFKMDGTAP-RYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQ 312
Query: 106 AIPRNIYLDGSGKQLVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEIT 165
IPR I+LD SGKQL+QWPV E+E+LR+ N+ +K L++G EV GVTAAQADVE+
Sbjct: 313 TIPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVL 372
Query: 166 FEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK- 224
F++ D+ KA+ P WT Q +C+ N SV+ GLGPFGL VLAS + +EYTSV+FR+FK
Sbjct: 373 FKVRDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKA 432
Query: 225 -KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSG 283
+ NK VVLMCSDQSRSSL EDNDKTTYGAFVD++P + LSLR+LIDHS+VESFGG G
Sbjct: 433 RQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINP-HQPLSLRALIDHSVVESFGGKG 491
Query: 284 RACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQIS 329
RACIT+RVYP AI + L+AFN + V + L+AWSM AQIS
Sbjct: 492 RACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSAQIS 537
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 16/17 (94%)
Query: 33 QPYRTGYHFQPPWHWIN 49
QPYRTG+HFQPP +W+N
Sbjct: 2 QPYRTGFHFQPPKNWMN 18
>pdb|2QQV|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 5/286 (1%)
Query: 47 WINDKGL-IDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQ 105
++ D G +DG A +YDYGK+YASKTFFDSAKNRRILWGW NES SV DD++KGW+G+Q
Sbjct: 254 FVPDNGFKMDGTAP-RYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQ 312
Query: 106 AIPRNIYLDGSGKQLVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEIT 165
IPR I+LD SGKQL+QWPV E+E+LR+ N+ +K L++G EV GVTAAQADVE+
Sbjct: 313 TIPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVL 372
Query: 166 FEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK- 224
F++ D+ KA+ P WT Q +C+ N SV+ GLGPFGL VLAS + +EYTSV+FR+FK
Sbjct: 373 FKVRDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKA 432
Query: 225 -KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSG 283
+ NK VVLMCSDQSRSSL EDNDKTTYGAFVD++P + LSLR+LIDHS+VESFGG G
Sbjct: 433 RQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINP-HQPLSLRALIDHSVVESFGGKG 491
Query: 284 RACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQIS 329
RACIT+RVYP AI + L+AFN + V + L+AWSM AQIS
Sbjct: 492 RACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSAQIS 537
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 33 QPYRTGYHFQPPWHWIND 50
QPYRTG+HFQPP +W+ND
Sbjct: 2 QPYRTGFHFQPPKNWMND 19
>pdb|2OXB|A Chain A, Crystal Structure Of A Cell-Wall Invertase (E203q) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 537
Score = 355 bits (912), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 5/286 (1%)
Query: 47 WINDKGL-IDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQ 105
++ D G +DG A +YDYGK+YASKTFFDSAKNRRILWGW NES SV DD++KGW+G+Q
Sbjct: 254 FVPDNGFKMDGTAP-RYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQ 312
Query: 106 AIPRNIYLDGSGKQLVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEIT 165
IPR I+LD SGKQL+QWPV E+E+LR+ N+ +K L++G EV GVTAAQADVE+
Sbjct: 313 TIPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVL 372
Query: 166 FEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK- 224
F++ D+ KA+ P WT Q +C+ N SV+ GLGPFGL VLAS + +EYTSV+FR+FK
Sbjct: 373 FKVRDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKA 432
Query: 225 -KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSG 283
+ NK VVLMCSDQSRSSL EDNDKTTYGAFVD++P + LSLR+LIDHS+VESFGG G
Sbjct: 433 RQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINP-HQPLSLRALIDHSVVESFGGKG 491
Query: 284 RACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQIS 329
RACIT+RVYP AI + L+AFN + V + L+AWSM AQIS
Sbjct: 492 RACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSAQIS 537
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 33 QPYRTGYHFQPPWHWIND 50
QPYRTG+HFQPP +W+ND
Sbjct: 2 QPYRTGFHFQPPKNWMND 19
>pdb|2XQR|A Chain A, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|C Chain C, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|E Chain E, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|G Chain G, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|I Chain I, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
pdb|2XQR|K Chain K, Crystal Structure Of Plant Cell Wall Invertase In Complex
With A Specific Protein Inhibitor
Length = 537
Score = 355 bits (912), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/286 (62%), Positives = 220/286 (76%), Gaps = 5/286 (1%)
Query: 47 WINDKGL-IDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQ 105
++ D G +DG A +YDYGK+YASKTFFDSAKNRRILWGW NES SV DD++KGW+G+Q
Sbjct: 254 FVPDNGFKMDGTAP-RYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQ 312
Query: 106 AIPRNIYLDGSGKQLVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEIT 165
IPR I+LD SGKQL+QWPV E+E+LR+ N+ +K L++G EV GVTAAQADVE+
Sbjct: 313 TIPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVL 372
Query: 166 FEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK- 224
F++ D+ KA+ P WT Q +C+ N SV+ GLGPFGL VLAS + +EYTSV+FR+FK
Sbjct: 373 FKVRDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKA 432
Query: 225 -KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSG 283
+ NK VVLMCSDQSRSSL EDNDKTTYGAFVD++P + LSLR+LIDHS+VESFGG G
Sbjct: 433 RQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINP-HQPLSLRALIDHSVVESFGGKG 491
Query: 284 RACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQIS 329
RACIT+RVYP AI + L+AFN + V + L+AWSM AQIS
Sbjct: 492 RACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSAQIS 537
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 33 QPYRTGYHFQPPWHWIND 50
QPYRTG+HFQPP +W+ND
Sbjct: 2 QPYRTGFHFQPPKNWMND 19
>pdb|2QQU|A Chain A, Crystal Structure Of A Cell-Wall Invertase (D239a) From
Arabidopsis Thaliana In Complex With Sucrose
Length = 535
Score = 352 bits (904), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/284 (61%), Positives = 218/284 (76%), Gaps = 5/284 (1%)
Query: 47 WINDKGL-IDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQ 105
++ D G +DG A +YDYGK+YASKTFFDSAKNRRILWGW NES SV DD++KGW+G+Q
Sbjct: 254 FVPDNGFKMDGTAP-RYDYGKYYASKTFFDSAKNRRILWGWTNESSSVEDDVEKGWSGIQ 312
Query: 106 AIPRNIYLDGSGKQLVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEIT 165
IPR I+LD SGKQL+QWPV E+E+LR+ N+ +K L++G EV GVTAAQADVE+
Sbjct: 313 TIPRKIWLDRSGKQLIQWPVREVERLRTKQVKNLRNKVLKSGSRLEVYGVTAAQADVEVL 372
Query: 166 FEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK- 224
F++ D+ KA+ P WT Q +C+ N SV+ GLGPFGL VLAS + +EYTSV+FR+FK
Sbjct: 373 FKVRDLEKADVIEPSWTDPQLICSKMNVSVKSGLGPFGLMVLASKNLEEYTSVYFRIFKA 432
Query: 225 -KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSG 283
+ NK VVLMCSDQSRSSL EDNDKTTYGAFVD++P + LSLR+LIDHS+VESFGG G
Sbjct: 433 RQNSNKYVVLMCSDQSRSSLKEDNDKTTYGAFVDINP-HQPLSLRALIDHSVVESFGGKG 491
Query: 284 RACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQ 327
RACIT+RVYP AI + L+AFN + V + L+AWSM AQ
Sbjct: 492 RACITSRVYPKLAIGKSSHLFAFNYGYQSVDVLNLNAWSMNSAQ 535
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 17/18 (94%)
Query: 33 QPYRTGYHFQPPWHWIND 50
QPYRTG+HFQPP +W+ND
Sbjct: 2 QPYRTGFHFQPPKNWMND 19
>pdb|1ST8|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus
pdb|2ADD|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Sucrose
pdb|2ADE|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With Fructose
pdb|2AEY|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia From
Cichorium Intybus In Complex With 2,5
Dideoxy-2,5-Immino-D-Mannitol
Length = 543
Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 198/269 (73%), Gaps = 1/269 (0%)
Query: 60 LKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQAIPRNIYLDGSGKQ 119
L+YDYG+FYASK+FFD AKNRR+LW W+ E+ S ADDI+KGWAG+Q+ PR +++D +GKQ
Sbjct: 266 LRYDYGQFYASKSFFDDAKNRRVLWAWVPETDSQADDIEKGWAGLQSFPRALWIDRNGKQ 325
Query: 120 LVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEITFEITDISKAEEYRP 179
L+QWPV E+E+LR + VN+ +K L+ G + E+ G+ A+QADV I+F++ + +AE
Sbjct: 326 LIQWPVEEIEELRQNQ-VNLQNKNLKPGSVLEIHGIAASQADVTISFKLEGLKEAEVLDT 384
Query: 180 RWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFKKADNKPVVLMCSDQS 239
Q LCN + AS RG LGPFGL +AS D +E +++FFRVF+ + VLMCSD S
Sbjct: 385 TLVDPQALCNERGASSRGALGPFGLLAMASKDLKEQSAIFFRVFQNQLGRYSVLMCSDLS 444
Query: 240 RSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSGRACITARVYPITAIED 299
RS++ + D T+YGAFVD+DP E++SLR+LIDHSI+ESFG G+ CIT+R+YP +
Sbjct: 445 RSTVRSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAGGKTCITSRIYPKFVNNE 504
Query: 300 KARLYAFNNATEGVTISTLSAWSMKKAQI 328
+A L+ FNN T+ V IS +SAWSMK A+
Sbjct: 505 EAHLFVFNNGTQNVKISEMSAWSMKNAKF 533
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 33 QPYRTGYHFQPPWHWINDKG---LIDGDAGLKYDYGKFYASKTFFDSAKNRRILWG---- 85
QPYRTGYHFQPP +W+ND L G Y Y + A TF D I+WG
Sbjct: 5 QPYRTGYHFQPPSNWMNDPNGPMLYQGVYHFFYQYNPYAA--TFGDV-----IIWGHAVS 57
Query: 86 -----WINESQSV----ADDIKKGWAGVQAI-PRNI 111
WI+ ++ D K W+G I P NI
Sbjct: 58 YDLVNWIHLDPAIYPTQEADSKSCWSGSATILPGNI 93
>pdb|2AEZ|A Chain A, Crystal Structure Of Fructan 1-Exohydrolase Iia (E201q)
From Cichorium Intybus In Complex With 1-Kestose
Length = 543
Score = 307 bits (786), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 143/269 (53%), Positives = 198/269 (73%), Gaps = 1/269 (0%)
Query: 60 LKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQAIPRNIYLDGSGKQ 119
L+YDYG+FYASK+FFD AKNRR+LW W+ E+ S ADDI+KGWAG+Q+ PR +++D +GKQ
Sbjct: 266 LRYDYGQFYASKSFFDDAKNRRVLWAWVPETDSQADDIEKGWAGLQSFPRALWIDRNGKQ 325
Query: 120 LVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEITFEITDISKAEEYRP 179
L+QWPV E+E+LR + VN+ +K L+ G + E+ G+ A+QADV I+F++ + +AE
Sbjct: 326 LIQWPVEEIEELRQNQ-VNLQNKNLKPGSVLEIHGIAASQADVTISFKLEGLKEAEVLDT 384
Query: 180 RWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFKKADNKPVVLMCSDQS 239
Q LCN + AS RG LGPFGL +AS D +E +++FFRVF+ + VLMCSD S
Sbjct: 385 TLVDPQALCNERGASSRGALGPFGLLAMASKDLKEQSAIFFRVFQNQLGRYSVLMCSDLS 444
Query: 240 RSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSGRACITARVYPITAIED 299
RS++ + D T+YGAFVD+DP E++SLR+LIDHSI+ESFG G+ CIT+R+YP +
Sbjct: 445 RSTVRSNIDTTSYGAFVDIDPRSEEISLRNLIDHSIIESFGAGGKTCITSRIYPKFVNNE 504
Query: 300 KARLYAFNNATEGVTISTLSAWSMKKAQI 328
+A L+ FNN T+ V IS +SAWSMK A+
Sbjct: 505 EAHLFVFNNGTQNVKISEMSAWSMKNAKF 533
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 33 QPYRTGYHFQPPWHWINDKG---LIDGDAGLKYDYGKFYASKTFFDSAKNRRILWG---- 85
QPYRTGYHFQPP +W+ND L G Y Y + A TF D I+WG
Sbjct: 5 QPYRTGYHFQPPSNWMNDPNGPMLYQGVYHFFYQYNPYAA--TFGDV-----IIWGHAVS 57
Query: 86 -----WINESQSV----ADDIKKGWAGVQAI-PRNI 111
WI+ ++ D K W+G I P NI
Sbjct: 58 YDLVNWIHLDPAIYPTQEADSKSCWSGSATILPGNI 93
>pdb|3UGF|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGF|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis
pdb|3UGG|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGG|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 1-Kestose
pdb|3UGH|A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
pdb|3UGH|B Chain B, Crystal Structure Of A 6-Sst6-Sft From Pachysandra
Terminalis In Complex With 6-Kestose
Length = 546
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 120/284 (42%), Positives = 153/284 (53%), Gaps = 7/284 (2%)
Query: 47 WINDKGLIDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQA 106
W D D GL+YD+GK+YASKTF+D K RR++W W E S D +KGWA VQ
Sbjct: 263 WTPDNPEEDVGIGLRYDWGKYYASKTFYDPKKQRRVVWAWTKELDSEVADREKGWANVQT 322
Query: 107 IPRNIYLD-GSGKQLVQWPVSELEQLRSSPPVNVFDK-RLEAGELHEVTGVTAAQADVEI 164
IPR + LD +G ++ WPV E+E LR S F K + AG + + TA Q D+
Sbjct: 323 IPRTVLLDQKTGTNVLLWPVEEVESLRLSS--KEFSKVKAGAGSVVPLDVGTATQLDIIA 380
Query: 165 TFEITDISKAEEYRPRWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFK 224
FEI +A E + A+ RG LGPFGL V A+ + E T V+F + K
Sbjct: 381 EFEID--KEALEGTIEADMGYNCTTSGGAAERGVLGPFGLLVSATENLSEQTPVYFYIAK 438
Query: 225 KADNKPVVLMCSDQSRSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSGR 284
D C D+SRSS D K G V V EK ++R L+DHSIVESF GR
Sbjct: 439 GTDGNFKTFFCLDESRSSKASDVSKQVKGFTVPVLD-GEKFTMRLLVDHSIVESFAQGGR 497
Query: 285 ACITARVYPITAIEDKARLYAFNNATEGVTISTLSAWSMKKAQI 328
+CIT+RVYP AI A+L+ FNNAT ++L W M A I
Sbjct: 498 SCITSRVYPTEAIYGAAKLFLFNNATGASITASLKIWEMNSAFI 541
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 20 PQNETKTPW-DYRFQPYRTGYHFQPPWHWINDKGLIDGDAGLKYDYGKFY 68
P N PW + + RT +HFQP W++D DG K Y FY
Sbjct: 2 PDNAVPYPWSNAQLSWQRTAFHFQPERSWMSDP---DGPIFYKGWYHFFY 48
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 95/254 (37%), Gaps = 38/254 (14%)
Query: 63 DYGK-FYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQAIPRNIYLD--GSGKQ 119
D+G FYA+ + + N + GW+N Q A+ W AIPR++ L GS
Sbjct: 288 DWGPDFYAAAGYNGLSLNDHVHIGWMNNWQYGANIPTYPWRSAMAIPRHMALKTIGSKAT 347
Query: 120 LVQWPVSELEQLRSSPPVNVFDKRLEAGELHEVTGVTAAQADVEITFEITDISKAEEYRP 179
LVQ P + + P+ R T T ++ + SKA
Sbjct: 348 LVQQPQEAWSSISNKRPIY---SRTFKTLSEGSTNTTTTGETFKVDLSFSAKSKAST--- 401
Query: 180 RWTHAQWLCNTKNASVRGGLGPFGLRVLASSDSQEYTSVFFRVFKKADNKPVVLMCSDQS 239
F + + AS++ E T V + K+ + L +
Sbjct: 402 ----------------------FAIALRASANFTEQTLVGYDFAKQQ----IFLDRTHSG 435
Query: 240 RSSLNEDNDKTTYGAFVDVDPIKEKLSLRSLIDHSIVESFGGSGRACITARVYPITAIED 299
S +E +G KLS+ +D S VE FGG G +TA+++P ++
Sbjct: 436 DVSFDETFASVYHGPLTPDSTGVVKLSI--FVDRSSVEVFGGQGETTLTAQIFP-SSDAV 492
Query: 300 KARLYAFNNATEGV 313
ARL + TE V
Sbjct: 493 HARLASTGGTTEDV 506
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 33 QPYRTGYHFQPPWHWINDKGLIDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQS 92
QPYR YHF P +W+ND GL Y G ++ F I WG I+ +
Sbjct: 5 QPYRGQYHFSPQKNWMNDPN------GLLYHNGTYH----LFFQYNPGGIEWGNISWGHA 54
Query: 93 VADDI 97
+++D+
Sbjct: 55 ISEDL 59
>pdb|1UYP|A Chain A, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|B Chain B, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|C Chain C, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|D Chain D, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|E Chain E, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
pdb|1UYP|F Chain F, The Three-Dimensional Structure Of Beta-Fructosidase
(Invertase) From Thermotoga Maritima
Length = 432
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 63 DYG-KFYASKTFFDSAKNRRILWGWINE--SQSVADDIKKGWAGVQAIPRNIYLDGSGKQ 119
D+G FYA++TFF + +R ++ GW+ + ++GW GV ++PR +Y++ + +
Sbjct: 234 DHGTDFYAAQTFFGT--DRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENN--E 289
Query: 120 LVQWPVSELEQLR 132
L PV EL LR
Sbjct: 290 LKVKPVDELLALR 302
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 35 YRTGYHFQPPWHWINDKGLIDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVA 94
++ YHF P W+ND GL + GK++ F R+ WG I +V+
Sbjct: 2 FKPNYHFFPITGWMNDPN------GLIFWKGKYH----MFYQYNPRKPEWGNICWGHAVS 51
Query: 95 DDI 97
DD+
Sbjct: 52 DDL 54
>pdb|1W2T|A Chain A, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|B Chain B, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|C Chain C, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|D Chain D, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|E Chain E, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
pdb|1W2T|F Chain F, Beta-Fructosidase From Thermotoga Maritima In Complex With
Raffinose
Length = 432
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 63 DYG-KFYASKTFFDSAKNRRILWGWINE--SQSVADDIKKGWAGVQAIPRNIYLDGSGKQ 119
D+G FYA++TFF + +R ++ GW+ + ++GW GV ++PR +Y++ + +
Sbjct: 234 DHGTDFYAAQTFFGT--DRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENN--E 289
Query: 120 LVQWPVSELEQLR 132
L PV EL LR
Sbjct: 290 LKVKPVDELLALR 302
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 35 YRTGYHFQPPWHWINDKGLIDGDAGLKYDYGKFYASKTFFDSAKNRRILWGWINESQSVA 94
++ YHF P W+ND GL + GK++ F R+ WG I +V+
Sbjct: 2 FKPNYHFFPITGWMNDPN------GLIFWKGKYH----MFYQYNPRKPEWGNICWGHAVS 51
Query: 95 DDI 97
DD+
Sbjct: 52 DDL 54
>pdb|3PIG|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIG|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum
pdb|3PIJ|A Chain A, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
pdb|3PIJ|B Chain B, Beta-Fructofuranosidase From Bifidobacterium Longum -
Complex With Fructose
Length = 526
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 66 KFYASKTFFDSAKNRRILWGWINESQSVADDIKKGWAGVQAIPRNIYLDGSGKQLVQWPV 125
+YA ++F + R+I++GW++ GW G +PR I L G +V PV
Sbjct: 300 NYYAPQSF--NVDGRQIVYGWMSPFVQPIPMEDDGWCGQLTLPREITL-GDDGDVVTAPV 356
Query: 126 SELEQLR 132
+E+E LR
Sbjct: 357 AEMEGLR 363
>pdb|3SC7|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes.
pdb|3RWK|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
Aspergillus Ficuum: Structural Analysis And Comparison
With Other Gh32 Enzymes
Length = 516
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 265 LSLRSLIDHSIVESFGGSGRACITARVYP 293
+S+R L+D VE FGG G A I+ ++P
Sbjct: 459 VSIRVLVDTCSVEVFGGQGEAVISDLIFP 487
>pdb|3NXK|A Chain A, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|B Chain B, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|C Chain C, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|D Chain D, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|E Chain E, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|F Chain F, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|G Chain G, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|H Chain H, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
Length = 334
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 200 GPFGLRVLASSDSQEYTSVFFRVFKKADNKPVVLMCSDQSRSSLNEDNDKTTYGA 254
G G+ + +D+ E T+ F + K+D KPVVL+ + + ++++ D K Y A
Sbjct: 88 GIDGVVITHGTDTXEETAYFLNLTIKSD-KPVVLVGAXRPSTAISADGPKNLYNA 141
>pdb|1AGX|A Chain A, Refined Crystal Structure Of Acinetobacter
Glutaminasificans Glutaminase-Asparaginase
Length = 331
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 136 PVNVFDKRL-EAGELHEVTGVTAAQADVEITFEITDISKAEEYRPRWTHAQWLCNTKNAS 194
PV+ K + + +L +TG+ A Q E ITD +E L K S
Sbjct: 32 PVDALIKAVPQVNDLANITGIQALQVASE---SITD----KELLSLARQVNDLV--KKPS 82
Query: 195 VRGGLGPFGLRVLASSDSQEYTSVFFRVFKKADNKPVVLMCSDQSRSSLNEDNDKTTYGA 254
V G + G +D+ E T+ F + D KP+VL+ S + ++L+ D Y A
Sbjct: 83 VNGVVITHG------TDTMEETAFFLNLVVHTD-KPIVLVGSMRPSTALSADGPLNLYSA 135
Query: 255 F 255
Sbjct: 136 V 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,181,472
Number of Sequences: 62578
Number of extensions: 422953
Number of successful extensions: 1152
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 35
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)