BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044535
(1085 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 98/160 (61%), Gaps = 7/160 (4%)
Query: 1 FRGEDTRSNFTSHLYAALCRAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDY 59
FRG DTR FT LY +L R KI TF D +L +G E+ P LL+AI+ S I + I+S Y
Sbjct: 42 FRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGY 101
Query: 60 ASSSWCLDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKH-EKYSSKT 118
A S WCL EL +I+ + D +I+LP+FY V+PSDVR QTG + +A KH K+ +T
Sbjct: 102 ADSKWCLMELAEIVR-RQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQT 160
Query: 119 KPKVLKWRAALTQVANLSGWHLDKQLGSEAELVEKIVKDV 158
+ W+ AL +V +L GWH+ K + + +K+ D+
Sbjct: 161 ---IQNWKDALKKVGDLKGWHIGKN-DKQGAIADKVSADI 196
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/164 (46%), Positives = 97/164 (59%), Gaps = 12/164 (7%)
Query: 1 FRGEDTRSNFTSHLYAALCRAKIETFID-YQLRRGDEVSPALLKAIEDSNISIVILSKDY 59
FRG DTR NF S LY L R I TF D +L G SP L IE S ++V++S++Y
Sbjct: 15 FRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENY 74
Query: 60 ASSSWCLDELLKILECKDTTDMGQI-VLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKT 118
A+SSWCLDEL+ I+ D G I V+P+FY V P+ VR QTG E KH +S+
Sbjct: 75 AASSWCLDELVTIM---DFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH---ASRE 128
Query: 119 KP-KVLKWRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKK 161
P KVLKWR ALT A LSG D +++LV+KI ++ K
Sbjct: 129 DPEKVLKWRQALTNFAQLSG---DCSGDDDSKLVDKIANEISNK 169
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 121/291 (41%), Gaps = 55/291 (18%)
Query: 656 KTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICN-LTSLTELAL- 713
+ S S TE+ + VP I S + L + +L++LP + + LT LT+L+L
Sbjct: 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESN---KLQSLPHGVFDKLTQLTKLSLS 60
Query: 714 ------HGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS 767
GC + + F S +KYL LS + + S+ L +L L Q LK++S
Sbjct: 61 SNGLSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMS 117
Query: 768 --SSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE--LPSSIDHLPQL 823
S L++L L + I + LE L +AG +E LP L L
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 824 SLLSLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLEL-PSALTCLSSLEILGLSG 882
+ L L C+ L +L P+A LSSL++L +S
Sbjct: 178 TFLDLSQCQ-----------------------------LEQLSPTAFNSLSSLQVLNMSH 208
Query: 883 NIFESLNLKPFSCLTHLNV-------SYCKRLQSLQEFPSPLRLVNLQAHE 926
N F SL+ P+ CL L V + Q LQ FPS L +NL ++
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 562 CQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRR- 619
C + + L+YL + ++ SNF E L LD HSNL+ + E L+LR
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNL 128
Query: 620 --IDLSYS-LHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWS----ITELDLGETAIE 672
+D+S++ + + +LE++ + G F ++ +T LDL + +E
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 673 EV-PPAIESLGKLVVLRL--DNCRRLKNLP 699
++ P A SL L VL + +N L P
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 94/228 (41%), Gaps = 44/228 (19%)
Query: 711 LALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS--S 768
L+ GC + + F IS +KYL LS + + S+ L +L L Q LK++S S
Sbjct: 383 LSFKGCCSQSDFGTIS--LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFS 439
Query: 769 SICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE--LPSSIDHLPQLSLL 826
L++L L + I + LE L +AG +E LP L L+ L
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 499
Query: 827 SLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLEL-PSALTCLSSLEILGLSGNIF 885
L C+ L +L P+A LSSL++L +S N F
Sbjct: 500 DLSQCQ-----------------------------LEQLSPTAFNSLSSLQVLNMSHNNF 530
Query: 886 ESLNLKPFSCLTHLNV-------SYCKRLQSLQEFPSPLRLVNLQAHE 926
SL+ P+ CL L V + Q LQ FPS L +NL ++
Sbjct: 531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 44/228 (19%)
Query: 711 LALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS--S 768
L+ GC + + F S +KYL LS + + S+ L +L L Q LK++S S
Sbjct: 359 LSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFS 415
Query: 769 SICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE--LPSSIDHLPQLSLL 826
L++L L + I + LE L +AG +E LP L L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 827 SLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLEL-PSALTCLSSLEILGLSGNIF 885
L C+ L +L P+A LSSL++L +S N F
Sbjct: 476 DLSQCQ-----------------------------LEQLSPTAFNSLSSLQVLNMSHNNF 506
Query: 886 ESLNLKPFSCLTHLNV-------SYCKRLQSLQEFPSPLRLVNLQAHE 926
SL+ P+ CL L V + Q LQ FPS L +NL ++
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 554
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 13/155 (8%)
Query: 562 CQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRR- 619
C + + L+YL + ++ SNF E L LD HSNL+ + E L+LR
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNL 423
Query: 620 --IDLSYS-LHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWS----ITELDLGETAIE 672
+D+S++ + + +LE++ + G F ++ +T LDL + +E
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 673 EV-PPAIESLGKLVVLRL--DNCRRLKNLPSSICN 704
++ P A SL L VL + +N L P N
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 128/295 (43%), Gaps = 61/295 (20%)
Query: 665 DLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPD 724
+LG +++ E+PP +ESL + +C L LP +L SL L +N+ D
Sbjct: 80 NLGLSSLPELPPHLESL-------VASCNSLTELPELPQSLKSL----LVDNNNLKALSD 128
Query: 725 ISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRV---SSSICKLKSLEILYL 781
+ ++YL +S +E+LP LQ LK + ++S+ KL L
Sbjct: 129 LPPLLEYLGVSNNQLEKLP------------ELQNSSFLKIIDVDNNSLKKLPDLPPSLE 176
Query: 782 F---GCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFL 838
F G ++LE LPE L+++ L +Y +K+LP LP LSL S+ NIL L
Sbjct: 177 FIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPD----LP-LSLESIVAGNNILEEL 230
Query: 839 TNXXXXXXXXXXXXXXXXXNDCNLL----ELPSALTCLS--------------SLEILGL 880
D NLL +LP +L L+ SL L +
Sbjct: 231 PELQNLPFLTTIYA------DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDV 284
Query: 881 SGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYLETVPA 935
S NIF L+ P L +LN S ++SL + P L +N+ ++ I L +P
Sbjct: 285 SENIFSGLSELP-PNLYYLNAS-SNEIRSLCDLPPSLEELNVSNNKLIELPALPP 337
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 95/235 (40%), Gaps = 53/235 (22%)
Query: 627 HLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVV 686
L E P+L + L + D SL K P S+ + G +EE+P +++L L
Sbjct: 184 QLEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTT 241
Query: 687 LRLDN--CRRLKNLPSSI-------CNLTSLTELA-----LHGCSNI-TKFPDISGDMKY 731
+ DN + L +LP S+ LT L EL L NI + ++ ++ Y
Sbjct: 242 IYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY 301
Query: 732 LSLSETAIE---ELPSSVECLT-------ELTVL--RLQKC----KRLKRVSSSICKLKS 775
L+ S I +LP S+E L EL L RL++ L V LK
Sbjct: 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQ 361
Query: 776 LEILYLFGCSKLEGLPEILESME----------------RLETLYLAGTPIKELP 814
L + Y + L P+I ES+E L+ L++ P++E P
Sbjct: 362 LHVEY----NPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 75/182 (41%), Gaps = 23/182 (12%)
Query: 716 CSNITKFPDIS---GDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSIC- 771
+ + + PD ++ L+L+ + LP+S+ L L L ++ C L + +
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 772 -----------KLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHL 820
L+SL + + + + LP + +++ L++L + +P+ L +I HL
Sbjct: 173 TDASGEHQGLVNLQSLRLEW----TGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228
Query: 821 PQLSLLSLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLELPSALTCLSSLEILGL 880
P+L L L C L N + NLL LP + L+ LE L L
Sbjct: 229 PKLEELDLRGC----TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 881 SG 882
G
Sbjct: 285 RG 286
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 21/138 (15%)
Query: 660 SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNI 719
++ L L T I +P +I +L L L++ N L L +I +L L EL L GC+ +
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL 242
Query: 720 TKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEIL 779
+P I G L L L+ C L + I +L LE L
Sbjct: 243 RNYPPIFGGR--------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 780 YLFGCSKLEGLPEILESM 797
L GC L LP ++ +
Sbjct: 283 DLRGCVNLSRLPSLIAQL 300
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 55/139 (39%), Gaps = 22/139 (15%)
Query: 639 NLEIMVLD--GCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLK 696
NL+ + L+ G SL ++ L + + + + PAI L KL L L C L+
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 697 NLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLR 756
N P L L L CSN+ LP + LT+L L
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLT--------------------LPLDIHRLTQLEKLD 283
Query: 757 LQKCKRLKRVSSSICKLKS 775
L+ C L R+ S I +L +
Sbjct: 284 LRGCVNLSRLPSLIAQLPA 302
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
Query: 725 ISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFG 783
I + +YL+L E +I+ + + + + L L +L+L K K + L SL L LF
Sbjct: 33 IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD 92
Query: 784 CSKLEGLP-EILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNX 841
++L +P + E + +L L+L PI+ +PS + + +P L L L K L
Sbjct: 93 -NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR----LEYI 147
Query: 842 XXXXXXXXXXXXXXXXNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHL 899
CNL ++P+ LT L LE L LSGN + + F LT L
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 9/178 (5%)
Query: 725 ISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFG 783
I + +YL+L E +I+ + + + + L L +L+L K K + L SL L LF
Sbjct: 33 IPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFD 92
Query: 784 CSKLEGLP-EILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNX 841
++L +P + E + +L L+L PI+ +PS + + +P L L L K L
Sbjct: 93 -NRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKR----LEYI 147
Query: 842 XXXXXXXXXXXXXXXXNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHL 899
CNL ++P+ LT L LE L LSGN + + F LT L
Sbjct: 148 SEAAFEGLVNLRYLNLGMCNLKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 97/234 (41%), Gaps = 33/234 (14%)
Query: 197 VGIWGMGGIGKTTIA-RAIFDR--IANQFEGCCFLENVREESAKRGVHRLQ--------E 245
V I+GM G GK+ +A A+ D + F G ++ ++ + +LQ E
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 246 ELFSRXXXXXXXXXXXXXXXHTFMNTRLRRK--TVLIVLDDVENSQQLKNLAGDHGWFGL 303
E FS+ + + RK L++LDDV + LK F
Sbjct: 210 ESFSQRLPLNIEEAKDR------LRVLMLRKHPRSLLILDDVWDPWVLKA-------FDN 256
Query: 304 GSRIIITSRDKQVLKT--GVDEMYEVEELNCRE-ALQLFSLNAFKLNHPTEDYMGLSNQV 360
+I++T+RDK V + G + VE RE L++ SL +N ED ++ +
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLF---VNMKKEDLPAEAHSI 313
Query: 361 VHYAKGIPLALKVLGCFLFGRSKRDWESALNKLRKNPNMEIQNVLRITYDTLDD 414
+ KG PL + ++G L R W L +L+ I+ Y+ LD+
Sbjct: 314 IKECKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQFKRIRKSSSYDYEALDE 366
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 10/186 (5%)
Query: 718 NITKFPD-ISGDMKYLSLSETAIEELP-SSVECLTELTVLRLQKCKRLKRVSSSICKLKS 775
N+ + PD IS + + L+L E I+ + +S + L L +L+L + + L +
Sbjct: 54 NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLAN 113
Query: 776 LEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKN 833
L L LF ++L +P + +L+ L+L PI+ +PS + + +P L L L K
Sbjct: 114 LNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172
Query: 834 ILVFLTNXXXXXXXXXXXXXXXXXNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPF 893
L +++ CNL E+P+ LT L L+ L LSGN ++ F
Sbjct: 173 -LSYISEGAFEGLSNLRYLNLAM---CNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSF 227
Query: 894 SCLTHL 899
L HL
Sbjct: 228 QGLMHL 233
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 66 LDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKP-KVLK 124
L +L LE K T G++VL V H+ + VR E L + EK P V
Sbjct: 63 LPAILNALEIK--TPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPV 120
Query: 125 WRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVE 184
R L ++ N+ G +D++ +++L + I D ++S + +E+ ++ V+
Sbjct: 121 GRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEI-----LETGIKVVD 175
Query: 185 SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235
L +G++G G+GKT + + + IA G V E +
Sbjct: 176 --LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERT 224
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 66 LDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKP-KVLK 124
L +L LE K T G++VL V H+ + VR E L + EK P V
Sbjct: 25 LPAILNALEIK--TPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPV 82
Query: 125 WRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVE 184
R L ++ N+ G +D++ +++L + I D ++S + +E+ ++ V+
Sbjct: 83 GRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEI-----LETGIKVVD 137
Query: 185 SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235
L +G++G G+GKT + + + IA G V E +
Sbjct: 138 --LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERT 186
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 66 LDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKP-KVLK 124
L +L LE K T G++VL V H+ + VR E L + EK P V
Sbjct: 36 LPAILNALEIK--TPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPV 93
Query: 125 WRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVE 184
R L ++ N+ G +D++ +++L + I D ++S + +E+ ++ V+
Sbjct: 94 GRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEI-----LETGIKVVD 148
Query: 185 SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235
L +G++G G+GKT + + + IA G V E +
Sbjct: 149 --LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERT 197
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 66 LDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKP-KVLK 124
L +L LE K T G++VL V H+ + VR E L + EK P V
Sbjct: 36 LPAILNALEIK--TPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPV 93
Query: 125 WRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVE 184
R L ++ N+ G +D++ +++L + I D ++S + +E+ ++ V+
Sbjct: 94 GRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEI-----LETGIKVVD 148
Query: 185 SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235
L +G++G G+GKT + + + IA G V E +
Sbjct: 149 --LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERT 197
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 66 LDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKP-KVLK 124
L +L LE K T G++VL V H+ + VR E L + EK P V
Sbjct: 30 LPAILNALEIK--TPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPV 87
Query: 125 WRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVE 184
R L ++ N+ G +D++ +++L + I D ++S + +E+ ++ V+
Sbjct: 88 GRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEI-----LETGIKVVD 142
Query: 185 SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235
L +G++G G+GKT + + + IA G V E +
Sbjct: 143 --LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERT 191
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 10/171 (5%)
Query: 66 LDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKP-KVLK 124
L +L LE K T G++VL V H+ + VR E L + EK P V
Sbjct: 25 LPAILNALEIK--TPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPISVPV 82
Query: 125 WRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVE 184
R L ++ N+ G +D++ +++L + I D ++S + +E+ ++ V+
Sbjct: 83 GRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEI-----LETGIKVVD 137
Query: 185 SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235
L +G++G G+GKT + + + IA G V E +
Sbjct: 138 --LLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFTGVGERT 186
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 38.5 bits (88), Expect = 0.022, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 5 DTRSNFTSHLYAALCRAKIET-FIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSS 63
+ +++F L L A E + D+ LR GD + ++ K + S IV+LS +
Sbjct: 30 EDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKE 89
Query: 64 WCLDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTK 119
W EL + + + + +LP+++ V+ +V SF +A +++ TK
Sbjct: 90 WPQKELDGLFQLESSGR--SRILPIWHKVSKDEV----ASFSPTMADKLAFNTSTK 139
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 13/164 (7%)
Query: 562 CQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRR- 619
C + + L+YL + ++ SNF E L LD HSNL+ + E L+LR
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-SEFSVFLSLRNL 423
Query: 620 --IDLSYS-LHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWS----ITELDLGETAIE 672
+D+S++ + + +LE++ + G F ++ +T LDL + +E
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 673 EV-PPAIESLGKLVVLRLDNCRRLKNLPSSICN-LTSLTELALH 714
++ P A SL L VL + + +LK++P I + LTSL ++ LH
Sbjct: 484 QLSPTAFNSLSSLQVLNMAS-NQLKSVPDGIFDRLTSLQKIWLH 526
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 37/194 (19%)
Query: 711 LALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS--S 768
L+ GC + + F S +KYL LS + + S+ L +L L Q LK++S S
Sbjct: 359 LSFKGCCSQSDFGTTS--LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFS 415
Query: 769 SICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE--LPSSIDHLPQLSLL 826
L++L L + I + LE L +AG +E LP L L+ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 827 SLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLEL-PSALTCLSSLEILGLSGNIF 885
L C+ L +L P+A LSSL++L ++ N
Sbjct: 476 DLSQCQ-----------------------------LEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 886 ESLNLKPFSCLTHL 899
+S+ F LT L
Sbjct: 507 KSVPDGIFDRLTSL 520
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 33/234 (14%)
Query: 197 VGIWGMGGIGKTTIA-RAIFDR--IANQFEGCCFLENVREESAKRGVHRLQ--------E 245
V I+GM G GK+ +A A+ D + F G ++ ++ + +LQ E
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 246 ELFSRXXXXXXXXXXXXXXXHTFMNTRLRRK--TVLIVLDDVENSQQLKNLAGDHGWFGL 303
E FS+ + + RK L++LDDV + LK F
Sbjct: 217 ESFSQRLPLNIEEAKDR------LRVLMLRKHPRSLLILDDVWDPWVLKA-------FDN 263
Query: 304 GSRIIITSRDKQVLKT--GVDEMYEVEELNCRE-ALQLFSLNAFKLNHPTEDYMGLSNQV 360
+I++T+ DK V + G + VE RE L++ SL +N ED ++ +
Sbjct: 264 QCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLF---VNMKKEDLPAEAHSI 320
Query: 361 VHYAKGIPLALKVLGCFLFGRSKRDWESALNKLRKNPNMEIQNVLRITYDTLDD 414
+ KG PL + ++G L R W L +L+ I+ Y+ LD+
Sbjct: 321 IKECKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQFKRIRKSSSYDYEALDE 373
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 9/178 (5%)
Query: 725 ISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFG 783
I + +YL+L E I+ + + + L L VL+L + + + L SL L LF
Sbjct: 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132
Query: 784 CSKLEGLPE-ILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNX 841
+ L +P E + +L L+L PI+ +PS + + +P L L L K L
Sbjct: 133 -NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK----LEYI 187
Query: 842 XXXXXXXXXXXXXXXXNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHL 899
CN+ ++P+ LT L LE L +SGN F + F L+ L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 111/286 (38%), Gaps = 42/286 (14%)
Query: 662 TELDLGETAIEEVPPAIESLGKLVVLR-----LDNCRRLKNLPSSICNLTSLTE-LALHG 715
E D +A PA ES G+ V++ L+N + N+ S LT+L + L H
Sbjct: 6 AEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGES--GLTTLPDCLPAHI 63
Query: 716 CS------NITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSS 769
+ N+T P + +++ L +S + LP L EL++ L + S
Sbjct: 64 TTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFS-NPLTHLPALPSG 122
Query: 770 ICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLE 829
+CK L++FG ++L LP + ++ EL S + L L L E
Sbjct: 123 LCK------LWIFG-NQLTSLPVLPPGLQ-------------ELSVSDNQLASLPALPSE 162
Query: 830 NCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLELPSALTCLSSLEILGLSGNIFESLN 889
CK L N +D L LP T S L L N SL
Sbjct: 163 LCK--LWAYNNQLTSLPMLPSGLQELSVSDNQLASLP---TLPSELYKLWAYNNRLTSLP 217
Query: 890 LKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYLETVPA 935
P S L L VS RL SL PS L+ + + + L +P+
Sbjct: 218 ALP-SGLKELIVS-GNRLTSLPVLPSELKELMVSGNRLTSLPMLPS 261
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNDLTELPA 165
Query: 816 SIDHLPQLSLLSLENCKNILV 836
+ L LEN +L+
Sbjct: 166 GL-------LNGLENLDTLLL 179
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 50 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 107
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 108 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPA 166
Query: 816 SI 817
+
Sbjct: 167 GL 168
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L C +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDRCE-LTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNQLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 695 LKNLPSSICNLTSLTELALHGCSNITKFPDISG--DMKYLSLSET---AIEELPSSVECL 749
++ + +++ L + LAL +NI K +SG +++ LSL IE L + + L
Sbjct: 37 IEKMDATLSTLKACKHLAL-STNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTL 95
Query: 750 TELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEI--LESMERLETLYLAG 807
EL + Q S I KL +L +LY+ +K+ EI L ++++LE L LAG
Sbjct: 96 EELWISYNQIASL-----SGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAG 149
Query: 808 TPI 810
P+
Sbjct: 150 NPL 152
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 661 ITELDLGETA-IEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSN 718
+ +LDL + A + V PA LG+L L LD C + P L +L L L +
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NA 140
Query: 719 ITKFPDIS----GDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKL 773
+ PD + G++ +L L I +P + L L L L + + + L
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 774 KSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTP 809
L LYLF + L LP E L + L+ L L P
Sbjct: 201 GRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 236
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.3 bits (77), Expect = 0.35, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 661 ITELDLGETA-IEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSN 718
+ +LDL + A + V PA LG+L L LD C + P L +L L L +
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NA 139
Query: 719 ITKFPDIS----GDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKL 773
+ PD + G++ +L L I +P + L L L L + + + L
Sbjct: 140 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 774 KSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTP 809
L LYLF + L LP E L + L+ L L P
Sbjct: 200 GRLMTLYLFA-NNLSALPTEALAPLRALQYLRLNDNP 235
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 695 LKNLPSSICNLTSLTELALHGCSNITKFPDISG--DMKYLSLSET---AIEELPSSVECL 749
++ + +++ L + LAL +NI K +SG +++ LSL IE L + + L
Sbjct: 38 IEKMDATLSTLKACKHLAL-STNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTL 96
Query: 750 TELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEI--LESMERLETLYLAG 807
EL + Q S I KL +L +LY+ +K+ EI L ++++LE L LAG
Sbjct: 97 EELWISYNQIASL-----SGIEKLVNLRVLYM-SNNKITNWGEIDKLAALDKLEDLLLAG 150
Query: 808 TPI 810
P+
Sbjct: 151 NPL 153
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 788 EGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILV 836
EGLP E +++L+ + GTP++E H + S + C+N+LV
Sbjct: 155 EGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLV 203
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 725 ISGDMKYLSLSETAIEELP-SSVECLTELTVLRLQKCKRLKRVSSSICK-LKSLEILYLF 782
I D + L L T + L ++ LT+LT L L +L+ +S+ + L L L L
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLA 91
Query: 783 GCSKLEGLP-EILESMERLETLYLAGTPIKELPSSI-DHLPQLSLLSL 828
++L LP + + + +L+ LYL G +K LPS + D L +L L L
Sbjct: 92 N-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 725 ISGDMKYLSLSETAIEELP-SSVECLTELTVLRLQKCKRLKRVSSSICK-LKSLEILYLF 782
I D + L L T + L ++ LT+LT L L +L+ +S+ + L L L L
Sbjct: 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLA 91
Query: 783 GCSKLEGLP-EILESMERLETLYLAGTPIKELPSSI-DHLPQLSLLSL 828
++L LP + + + +L+ LYL G +K LPS + D L +L L L
Sbjct: 92 N-NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 10/127 (7%)
Query: 664 LDLGETAIEEVPPAI-ESLGKLVVLRLDNCRRLKNLPSSICN-LTSLTELALHGCSNITK 721
L L + I ++ P + +SL L L L + +L LP + + LT LT L L G + +T
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDL-GTNQLTV 102
Query: 722 FPDISGD----MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS-SSICKLKSL 776
P D +K L + + ELP +E LT LT L L + +LK + + +L SL
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSL 161
Query: 777 EILYLFG 783
YLFG
Sbjct: 162 THAYLFG 168
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 62/148 (41%), Gaps = 12/148 (8%)
Query: 760 CKRLKRVSSSICKLKSLEILYLFG--CSKLEGLPEILESMERLETLYLAGTPIKELPSSI 817
C+ + S + +ILYL +KLE P + +S+ L+ LYL + LP +
Sbjct: 26 CRSKRHASVPAGIPTNAQILYLHDNQITKLE--PGVFDSLINLKELYLGSNQLGALPVGV 83
Query: 818 -DHLPQLSLLSLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCN-LLELPSALTCLSSL 875
D L QL++L L N L L + CN L ELP + L+ L
Sbjct: 84 FDSLTQLTVLDLGT--NQLTVLPSAVFDRLVHLKELFMC----CNKLTELPRGIERLTHL 137
Query: 876 EILGLSGNIFESLNLKPFSCLTHLNVSY 903
L L N +S+ F L+ L +Y
Sbjct: 138 THLALDQNQLKSIPHGAFDRLSSLTHAY 165
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L + +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDR-AELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L + +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDR-AELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 700 SSICNLTSLTELALHGCSNITKFPDISGDMKYLS---LSETAIEELPSSVECLTELTVLR 756
+++ T LT+L L + +TK + G + L LS ++ LP + L LTVL
Sbjct: 49 ATLMPYTRLTQLNLDR-AELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106
Query: 757 LQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPS 815
+ + ++ L L+ LYL G ++L+ LP +L +LE L LA + ELP+
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165
Query: 816 SI 817
+
Sbjct: 166 GL 167
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 14 LYAALCRAKIETFIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELL 70
++ A CR Q G+E+ +K +D+N+ IV + + ++ SWCL +L
Sbjct: 171 IHCAFCRPT-------QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVL 220
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 861 NLLELPSALTCLSSLEILGLSGNIFESL---NLKPFSCLTHLNV-SYCKRLQ 908
+L ELPS L LS+L+ L LS N FE+L + F LTHL++ KRL+
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE 340
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 14 LYAALCRAKIETFIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELL 70
++ A CR Q G+E+ +K +D+N+ IV + + ++ SWCL +L
Sbjct: 189 IHCAFCRPT-------QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVL 238
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 14 LYAALCRAKIETFIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELL 70
++ A CR Q G+E+ +K +D+N+ IV + + ++ SWCL +L
Sbjct: 189 IHCAFCRPT-------QTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVL 238
>pdb|2UZX|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|D Chain D, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|D Chain D, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
Length = 727
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 59 YASSSWCLDELLKILECKDTTDMGQIVLPVFYHVNPSDVRKQTGS 103
+ WC D+ ++ EC T QI LP Y V P+ + G+
Sbjct: 514 FVQCGWCHDKCVRSEECLSGTWTQQICLPAIYKVFPNSAPLEGGT 558
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 49/246 (19%)
Query: 704 NLTSLTELALHGCSNITKFPDISGDMKYLSLSETAI------EELPSSVECLTELTV-LR 756
NL LT++ ++ C N+TK P + L A E+L + L + V +
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEK 306
Query: 757 LQ----KCKRLKR--VSSSICKLKS---LEILYLFGCSKLEGLPEILESMERLETLYLAG 807
+Q LK V +S+ K K LE LY ++LEG S +L +L LA
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLY----NQLEGKLPAFGSEIKLASLNLAY 362
Query: 808 TPIKELPSSI-DHLPQLSLLSLENCKNILVFLTNXXXXXXXXXXXXXXXXXNDCNLLELP 866
I E+P++ Q+ LS N L ++ N D + +
Sbjct: 363 NQITEIPANFCGFTEQVENLSF--AHNKLKYIPNIF----------------DAKSVSVX 404
Query: 867 SALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEFP-------SPLRL 919
SA+ S EI + G F+ L+ PF + +++ + +FP SPL
Sbjct: 405 SAID-FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN--QISKFPKELFSTGSPLSS 461
Query: 920 VNLQAH 925
+NL +
Sbjct: 462 INLXGN 467
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 22/182 (12%)
Query: 617 LRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYS---------LIKFPKTSWSITELDLG 667
L+ +DLS++ E P+ + + ++ LD + L + PK + + EL L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT--LQELYLQ 399
Query: 668 ETAIE-EVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS 726
++PP + + +LV L L +PSS+ +L+ L +L L N+ + +I
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW--LNMLE-GEIP 456
Query: 727 GDMKYLSLSETAI-------EELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEIL 779
++ Y+ ET I E+PS + T L + L + + I +L++L IL
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
Query: 780 YL 781
L
Sbjct: 517 KL 518
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 742 LPSSVECLTELTVLRLQKCKRL-KRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERL 800
+PSS+ L L L + L + +I KL L LY+ + +P+ L ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 801 ETL-----YLAGTPIKELPSSIDHLPQL 823
TL L+GT LP SI LP L
Sbjct: 128 VTLDFSYNALSGT----LPPSISSLPNL 151
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 25/200 (12%)
Query: 615 LNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCY-SLIKFPKTSWSITELDLGETAIEE 673
L L R++LS SL N P +I VL+ +LI P+ S+ LD + +
Sbjct: 64 LQLNRLNLS-SLPDNLPP--------QITVLEITQNALISLPELPASLEYLDACDNRLST 114
Query: 674 VPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLS 733
+P SL L V DN +L LP L +L E + +T P++ ++ LS
Sbjct: 115 LPELPASLKHLDV---DN-NQLTXLPE----LPALLEYINADNNQLTXLPELPTSLEVLS 166
Query: 734 LSE---TAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGL 790
+ T + ELP S+E L T L + L V + EI + +++ +
Sbjct: 167 VRNNQLTFLPELPESLEALDVSTNL----LESLPAVPVRNHHSEETEIFFRCRENRITHI 222
Query: 791 PEILESMERLETLYLAGTPI 810
PE + S++ T+ L P+
Sbjct: 223 PENILSLDPTCTIILEDNPL 242
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 22/182 (12%)
Query: 617 LRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYS---------LIKFPKTSWSITELDLG 667
L+ +DLS++ E P+ + + ++ LD + L + PK + + EL L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT--LQELYLQ 402
Query: 668 ETAIE-EVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS 726
++PP + + +LV L L +PSS+ +L+ L +L L N+ + +I
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW--LNMLE-GEIP 459
Query: 727 GDMKYLSLSETAI-------EELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEIL 779
++ Y+ ET I E+PS + T L + L + + I +L++L IL
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 780 YL 781
L
Sbjct: 520 KL 521
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 40/163 (24%), Positives = 58/163 (35%), Gaps = 30/163 (18%)
Query: 661 ITELDLGETAIEEV--PPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSN 718
+ +LDL + A V P LG L L LD C + P L +L L L +N
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NN 139
Query: 719 ITKFPDIS----GDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLK 774
+ PD + G++ +L L I +P + L
Sbjct: 140 LQALPDNTFRDLGNLTHLFLHGNRIPSVPEH-----------------------AFRGLH 176
Query: 775 SLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSI 817
SL+ L L P + RL TLYL + LP+ +
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 690 DNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYL 732
D ++ +N S NL LT++ L+ C N T+ PD D+ L
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNXTQLPDFLYDLPEL 517
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLE 788
++ + S+ +E++P + T L L+ K +K LK+L L L +
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK 90
Query: 789 GLPEILESMERLETLYLAGTPIKELPSSI 817
P + +LE LYL+ +KELP +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKM 119
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLE 788
++ + S+ +E++P + T L L+ K +K LK+L L L +
Sbjct: 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK 90
Query: 789 GLPEILESMERLETLYLAGTPIKELPSSI 817
P + +LE LYL+ +KELP +
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKM 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,955,442
Number of Sequences: 62578
Number of extensions: 1260315
Number of successful extensions: 3619
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 3515
Number of HSP's gapped (non-prelim): 130
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)