Query 044535
Match_columns 1085
No_of_seqs 979 out of 6764
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:12:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-133 5E-138 1290.6 81.9 867 1-911 19-910 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.8E-59 6.1E-64 569.7 28.9 305 174-484 161-499 (889)
3 PLN03194 putative disease resi 100.0 1.2E-41 2.6E-46 327.2 14.3 144 1-163 33-178 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 6.3E-37 1.4E-41 340.0 14.6 268 176-447 1-284 (287)
5 PLN00113 leucine-rich repeat r 100.0 6.5E-35 1.4E-39 378.4 28.3 436 487-935 43-493 (968)
6 PLN00113 leucine-rich repeat r 100.0 2.4E-32 5.3E-37 354.4 25.2 426 518-963 145-588 (968)
7 KOG4194 Membrane glycoprotein 99.9 1.2E-28 2.6E-33 268.6 3.7 309 571-905 103-427 (873)
8 KOG0444 Cytoskeletal regulator 99.9 4.2E-29 9E-34 273.1 -4.9 341 560-910 23-378 (1255)
9 KOG0444 Cytoskeletal regulator 99.9 5.6E-28 1.2E-32 264.3 -2.0 357 572-938 9-383 (1255)
10 KOG4194 Membrane glycoprotein 99.9 1.5E-26 3.3E-31 252.4 6.8 351 515-882 80-448 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 1.1E-27 2.3E-32 250.8 -7.7 353 571-929 69-540 (565)
12 KOG0618 Serine/threonine phosp 99.9 1.6E-26 3.4E-31 266.0 -2.5 391 517-930 25-489 (1081)
13 KOG0472 Leucine-rich repeat pr 99.9 5.6E-27 1.2E-31 245.5 -8.4 367 517-905 118-539 (565)
14 PLN03210 Resistant to P. syrin 99.9 1.7E-22 3.7E-27 262.0 26.6 334 566-935 554-911 (1153)
15 KOG0618 Serine/threonine phosp 99.8 5.1E-23 1.1E-27 237.3 -2.6 394 539-957 23-487 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 3E-19 6.5E-24 214.4 15.1 261 570-889 201-461 (788)
17 PF01582 TIR: TIR domain; Int 99.8 9.2E-20 2E-24 177.9 2.8 130 1-130 5-140 (141)
18 PRK15387 E3 ubiquitin-protein 99.8 2.8E-18 6.1E-23 206.1 15.4 258 537-863 201-458 (788)
19 PRK15370 E3 ubiquitin-protein 99.7 1.5E-16 3.2E-21 192.9 13.3 246 570-863 178-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 5.7E-16 1.2E-20 187.9 14.1 247 592-887 178-429 (754)
21 smart00255 TIR Toll - interleu 99.6 5.7E-15 1.2E-19 144.6 10.6 130 1-133 8-138 (140)
22 KOG4237 Extracellular matrix p 99.5 7.7E-16 1.7E-20 162.5 0.9 125 567-691 64-197 (498)
23 cd00116 LRR_RI Leucine-rich re 99.5 3.2E-15 6.9E-20 168.9 2.6 215 674-904 73-317 (319)
24 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.4E-20 161.3 -4.9 296 575-885 51-358 (498)
25 KOG0617 Ras suppressor protein 99.4 5.1E-15 1.1E-19 138.6 -4.3 127 737-870 66-193 (264)
26 cd00116 LRR_RI Leucine-rich re 99.4 3.6E-14 7.8E-19 160.4 0.7 259 590-885 21-319 (319)
27 KOG0617 Ras suppressor protein 99.4 3.9E-15 8.5E-20 139.3 -6.1 154 728-889 34-189 (264)
28 PRK04841 transcriptional regul 99.3 6.2E-11 1.4E-15 153.7 24.6 292 166-481 9-333 (903)
29 KOG4658 Apoptotic ATPase [Sign 99.2 4.8E-12 1E-16 156.3 5.5 311 571-938 524-850 (889)
30 PF13676 TIR_2: TIR domain; PD 99.1 4.4E-11 9.5E-16 109.7 3.6 83 1-91 5-87 (102)
31 PRK00411 cdc6 cell division co 99.1 5.3E-09 1.2E-13 121.6 21.5 247 168-426 27-308 (394)
32 TIGR00635 ruvB Holliday juncti 99.1 2.7E-09 5.9E-14 119.3 16.2 269 171-462 4-289 (305)
33 PRK00080 ruvB Holliday junctio 99.1 1.8E-09 3.9E-14 121.5 14.7 274 167-462 21-310 (328)
34 PF01637 Arch_ATPase: Archaeal 99.0 1E-09 2.2E-14 117.8 10.8 196 173-373 1-233 (234)
35 PF05729 NACHT: NACHT domain 99.0 2.6E-09 5.6E-14 107.9 12.2 142 195-343 1-163 (166)
36 KOG0532 Leucine-rich repeat (L 99.0 3.6E-11 7.7E-16 133.3 -3.2 164 732-905 103-271 (722)
37 TIGR02928 orc1/cdc6 family rep 99.0 6.6E-08 1.4E-12 111.3 22.8 248 168-426 12-300 (365)
38 COG4886 Leucine-rich repeat (L 98.9 2.5E-09 5.5E-14 124.5 8.8 169 659-832 116-288 (394)
39 KOG0532 Leucine-rich repeat (L 98.9 1.4E-10 2.9E-15 128.8 -2.0 210 575-831 55-270 (722)
40 KOG3207 Beta-tubulin folding c 98.9 2.6E-10 5.7E-15 123.0 0.0 135 748-887 195-340 (505)
41 COG3899 Predicted ATPase [Gene 98.9 1.5E-08 3.3E-13 126.2 15.5 308 173-483 2-389 (849)
42 KOG1259 Nischarin, modulator o 98.9 4.3E-10 9.3E-15 115.0 1.1 124 798-928 284-410 (490)
43 COG4886 Leucine-rich repeat (L 98.9 2.5E-09 5.5E-14 124.5 7.4 174 729-910 118-293 (394)
44 TIGR03015 pepcterm_ATPase puta 98.9 8.5E-08 1.8E-12 105.3 18.6 178 194-378 43-242 (269)
45 COG2909 MalT ATP-dependent tra 98.8 1.3E-07 2.8E-12 111.2 18.6 294 166-483 14-341 (894)
46 COG2256 MGS1 ATPase related to 98.8 4.5E-08 9.7E-13 105.8 13.6 163 172-368 31-206 (436)
47 KOG3207 Beta-tubulin folding c 98.8 7.8E-10 1.7E-14 119.4 0.1 203 678-904 117-336 (505)
48 PF14580 LRR_9: Leucine-rich r 98.8 4.1E-09 8.9E-14 104.8 4.4 86 797-888 41-128 (175)
49 KOG1259 Nischarin, modulator o 98.8 1.4E-09 3E-14 111.3 0.2 124 773-905 283-410 (490)
50 KOG1909 Ran GTPase-activating 98.8 7E-10 1.5E-14 116.8 -2.1 225 660-906 31-310 (382)
51 PF14580 LRR_9: Leucine-rich r 98.7 8.4E-09 1.8E-13 102.6 3.6 105 795-907 16-126 (175)
52 PRK06893 DNA replication initi 98.6 5.5E-07 1.2E-11 95.6 15.5 149 194-374 39-203 (229)
53 KOG1909 Ran GTPase-activating 98.6 2E-08 4.3E-13 106.0 1.8 34 591-624 29-67 (382)
54 PRK13342 recombination factor 98.5 7.6E-07 1.6E-11 103.4 14.1 176 168-374 9-196 (413)
55 PTZ00112 origin recognition co 98.5 1.7E-06 3.6E-11 102.7 16.2 244 168-424 752-1030(1164)
56 COG3903 Predicted ATPase [Gene 98.5 1.2E-07 2.7E-12 103.3 5.9 258 193-462 13-292 (414)
57 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.3E-06 7.2E-11 90.0 15.0 172 170-375 14-202 (226)
58 PRK12402 replication factor C 98.4 2.1E-06 4.5E-11 97.7 14.0 199 167-371 11-223 (337)
59 PTZ00202 tuzin; Provisional 98.4 2E-05 4.3E-10 87.2 20.0 173 152-341 237-432 (550)
60 PRK07003 DNA polymerase III su 98.4 1E-05 2.2E-10 96.0 18.6 182 167-373 12-220 (830)
61 KOG2120 SCF ubiquitin ligase, 98.4 1.7E-08 3.7E-13 103.7 -3.8 179 728-929 186-375 (419)
62 PRK14961 DNA polymerase III su 98.4 1.1E-05 2.5E-10 91.8 18.6 178 168-370 13-216 (363)
63 PRK14963 DNA polymerase III su 98.4 1.2E-05 2.6E-10 94.5 19.0 193 167-371 10-214 (504)
64 PF13173 AAA_14: AAA domain 98.3 2.1E-06 4.5E-11 82.2 9.5 117 195-334 3-126 (128)
65 PLN03025 replication factor C 98.3 5.5E-06 1.2E-10 92.8 13.6 180 167-368 9-194 (319)
66 TIGR01242 26Sp45 26S proteasom 98.3 3.2E-06 7E-11 96.6 11.7 173 169-368 120-328 (364)
67 PRK04195 replication factor C 98.3 1.8E-05 3.9E-10 93.8 18.4 179 166-371 9-199 (482)
68 PRK07471 DNA polymerase III su 98.3 5.2E-05 1.1E-09 85.6 20.9 200 166-375 14-239 (365)
69 PRK00440 rfc replication facto 98.3 2.6E-05 5.6E-10 88.0 18.7 181 167-370 13-199 (319)
70 PRK14960 DNA polymerase III su 98.3 1.2E-05 2.6E-10 94.5 15.5 178 167-369 11-214 (702)
71 PF13191 AAA_16: AAA ATPase do 98.3 1.1E-06 2.5E-11 90.3 6.4 50 172-221 1-51 (185)
72 cd00009 AAA The AAA+ (ATPases 98.3 6.8E-06 1.5E-10 80.7 11.7 123 174-315 1-131 (151)
73 PRK14949 DNA polymerase III su 98.3 1.3E-05 2.8E-10 97.1 15.8 185 168-373 13-220 (944)
74 PRK05564 DNA polymerase III su 98.3 1.5E-05 3.2E-10 89.2 15.4 176 171-374 4-190 (313)
75 PF05496 RuvB_N: Holliday junc 98.3 5.4E-06 1.2E-10 84.3 10.6 171 167-370 20-217 (233)
76 KOG2120 SCF ubiquitin ligase, 98.2 4.4E-08 9.4E-13 100.8 -4.8 182 592-808 185-373 (419)
77 PRK14957 DNA polymerase III su 98.2 2E-05 4.4E-10 92.7 16.3 182 168-374 13-221 (546)
78 KOG2028 ATPase related to the 98.2 8.6E-06 1.9E-10 86.4 11.7 145 170-341 137-292 (554)
79 PRK15386 type III secretion pr 98.2 4.6E-06 1E-10 93.0 10.0 134 751-906 73-212 (426)
80 PRK12323 DNA polymerase III su 98.2 1.2E-05 2.7E-10 94.1 13.7 198 167-372 12-223 (700)
81 PF13855 LRR_8: Leucine rich r 98.2 9.3E-07 2E-11 72.1 3.3 58 799-861 2-60 (61)
82 PRK14962 DNA polymerase III su 98.2 2.3E-05 5E-10 91.4 15.6 185 167-376 10-221 (472)
83 PF13855 LRR_8: Leucine rich r 98.2 8.5E-07 1.8E-11 72.4 2.6 60 821-885 1-61 (61)
84 PRK07940 DNA polymerase III su 98.2 3.1E-05 6.7E-10 88.1 16.1 177 170-374 4-213 (394)
85 KOG0531 Protein phosphatase 1, 98.2 2.4E-07 5.3E-12 108.0 -1.0 124 773-905 161-288 (414)
86 PF13401 AAA_22: AAA domain; P 98.2 7.2E-06 1.6E-10 79.0 9.5 113 194-313 4-125 (131)
87 PRK13341 recombination factor 98.2 2.1E-05 4.6E-10 96.0 15.5 170 167-368 24-211 (725)
88 PLN03150 hypothetical protein; 98.2 2.5E-06 5.3E-11 104.2 7.5 106 752-861 420-526 (623)
89 PRK06645 DNA polymerase III su 98.2 2.9E-05 6.3E-10 90.9 15.8 181 167-368 17-223 (507)
90 KOG4341 F-box protein containi 98.2 8.2E-08 1.8E-12 103.6 -4.9 85 748-832 292-383 (483)
91 PRK08903 DnaA regulatory inact 98.2 2.5E-05 5.4E-10 83.2 14.0 173 169-378 16-203 (227)
92 TIGR02397 dnaX_nterm DNA polym 98.2 6.1E-05 1.3E-09 86.3 18.2 183 167-374 10-218 (355)
93 PLN03150 hypothetical protein; 98.2 4.9E-06 1.1E-10 101.6 9.6 105 775-884 419-526 (623)
94 PRK08727 hypothetical protein; 98.2 5E-05 1.1E-09 80.8 16.1 165 170-368 18-198 (233)
95 PRK14956 DNA polymerase III su 98.1 4.2E-05 9.2E-10 87.6 15.8 191 167-368 14-216 (484)
96 PRK15386 type III secretion pr 98.1 9.9E-06 2.1E-10 90.5 10.4 40 683-724 73-112 (426)
97 PRK09112 DNA polymerase III su 98.1 6.2E-05 1.3E-09 84.5 16.5 197 166-375 18-241 (351)
98 KOG0531 Protein phosphatase 1, 98.1 5.6E-07 1.2E-11 105.0 0.1 150 727-887 162-319 (414)
99 TIGR00678 holB DNA polymerase 98.1 0.0001 2.2E-09 75.9 16.5 87 275-369 95-186 (188)
100 PRK08691 DNA polymerase III su 98.1 2.2E-05 4.9E-10 93.2 12.7 193 167-371 12-217 (709)
101 PRK14964 DNA polymerase III su 98.1 6.8E-05 1.5E-09 87.0 16.3 178 167-369 9-212 (491)
102 PRK03992 proteasome-activating 98.1 3.8E-05 8.2E-10 88.2 14.2 171 169-367 129-336 (389)
103 PRK09087 hypothetical protein; 98.1 7.1E-05 1.5E-09 78.9 14.8 137 194-373 44-194 (226)
104 PRK05896 DNA polymerase III su 98.1 5.2E-05 1.1E-09 89.3 15.0 196 167-375 12-222 (605)
105 KOG4341 F-box protein containi 98.1 1.6E-07 3.5E-12 101.3 -5.1 110 819-932 318-441 (483)
106 PRK05642 DNA replication initi 98.1 0.00012 2.5E-09 78.0 16.2 146 195-372 46-206 (234)
107 PF14516 AAA_35: AAA-like doma 98.0 0.0011 2.3E-08 74.6 24.7 204 167-381 7-246 (331)
108 PRK07994 DNA polymerase III su 98.0 5.1E-05 1.1E-09 90.7 14.6 179 167-370 12-216 (647)
109 PF00308 Bac_DnaA: Bacterial d 98.0 0.00024 5.3E-09 74.6 18.1 151 193-368 33-202 (219)
110 PRK14955 DNA polymerase III su 98.0 0.00013 2.7E-09 84.3 17.4 197 167-370 12-224 (397)
111 PRK08084 DNA replication initi 98.0 0.00014 3.1E-09 77.4 16.4 164 173-372 25-207 (235)
112 PHA02544 44 clamp loader, smal 98.0 4.5E-05 9.7E-10 85.8 13.0 150 166-341 16-171 (316)
113 PRK14951 DNA polymerase III su 98.0 0.0001 2.2E-09 88.0 16.3 191 168-371 13-222 (618)
114 PRK14958 DNA polymerase III su 98.0 9.6E-05 2.1E-09 87.3 15.9 180 167-371 12-217 (509)
115 COG1474 CDC6 Cdc6-related prot 98.0 0.00013 2.8E-09 82.3 16.2 245 168-426 14-291 (366)
116 PRK14969 DNA polymerase III su 98.0 4.5E-05 9.7E-10 90.6 12.5 177 168-369 13-215 (527)
117 PRK14952 DNA polymerase III su 98.0 0.00023 4.9E-09 84.8 18.0 196 167-374 9-220 (584)
118 KOG1859 Leucine-rich repeat pr 97.9 2.2E-07 4.7E-12 106.3 -7.3 175 743-928 102-290 (1096)
119 PRK14959 DNA polymerase III su 97.9 0.00017 3.6E-09 85.6 16.0 186 167-377 12-224 (624)
120 PRK14970 DNA polymerase III su 97.9 0.00014 3E-09 83.6 15.1 179 167-369 13-204 (367)
121 TIGR02903 spore_lon_C ATP-depe 97.9 0.00013 2.9E-09 88.4 14.8 175 167-344 150-367 (615)
122 PRK07764 DNA polymerase III su 97.9 0.00036 7.7E-09 86.6 18.6 178 167-369 11-216 (824)
123 PRK14954 DNA polymerase III su 97.8 0.00064 1.4E-08 81.7 19.0 193 167-369 12-223 (620)
124 PRK09111 DNA polymerase III su 97.8 0.0006 1.3E-08 81.8 18.5 191 167-372 20-231 (598)
125 PRK14087 dnaA chromosomal repl 97.8 0.00033 7.1E-09 81.8 15.7 162 195-375 142-320 (450)
126 KOG1859 Leucine-rich repeat pr 97.8 4.9E-07 1.1E-11 103.6 -7.4 121 776-905 166-290 (1096)
127 TIGR02881 spore_V_K stage V sp 97.8 0.00021 4.5E-09 77.7 12.9 130 193-344 41-192 (261)
128 PRK14953 DNA polymerase III su 97.8 0.0005 1.1E-08 80.8 16.8 190 167-372 12-218 (486)
129 PRK07133 DNA polymerase III su 97.8 0.00034 7.3E-09 84.3 15.4 191 167-374 14-220 (725)
130 TIGR03689 pup_AAA proteasome A 97.8 0.00019 4E-09 83.8 12.5 157 168-343 179-378 (512)
131 PRK06305 DNA polymerase III su 97.8 0.00042 9.1E-09 80.9 15.5 181 168-373 14-222 (451)
132 PRK08451 DNA polymerase III su 97.8 0.00047 1E-08 80.9 15.8 181 167-371 10-215 (535)
133 PRK14950 DNA polymerase III su 97.7 0.00097 2.1E-08 80.9 18.8 195 167-373 12-220 (585)
134 PTZ00361 26 proteosome regulat 97.7 0.00012 2.7E-09 84.0 10.4 154 169-345 181-369 (438)
135 PRK14088 dnaA chromosomal repl 97.7 0.00082 1.8E-08 78.4 17.1 151 194-368 130-299 (440)
136 TIGR02639 ClpA ATP-dependent C 97.7 0.00036 7.7E-09 87.1 15.0 169 149-343 163-358 (731)
137 KOG2982 Uncharacterized conser 97.7 1.8E-05 3.9E-10 82.0 2.4 75 574-648 49-131 (418)
138 PRK06620 hypothetical protein; 97.7 0.0002 4.4E-09 74.8 10.0 128 195-367 45-182 (214)
139 PRK14971 DNA polymerase III su 97.7 0.0034 7.3E-08 76.0 21.8 176 168-369 14-217 (614)
140 PRK09376 rho transcription ter 97.7 6.9E-05 1.5E-09 82.9 6.7 93 194-289 169-269 (416)
141 KOG0989 Replication factor C, 97.7 0.00011 2.3E-09 77.2 7.6 189 167-374 32-231 (346)
142 cd01128 rho_factor Transcripti 97.7 2.8E-05 6E-10 82.7 3.4 93 194-288 16-115 (249)
143 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00049 1.1E-08 86.5 15.0 190 149-366 168-388 (852)
144 PRK14948 DNA polymerase III su 97.7 0.0011 2.3E-08 80.2 17.3 193 168-372 13-220 (620)
145 KOG2543 Origin recognition com 97.7 0.00029 6.2E-09 76.2 10.8 167 169-342 4-192 (438)
146 PTZ00454 26S protease regulato 97.7 0.00065 1.4E-08 77.7 14.6 154 168-344 142-330 (398)
147 PRK06647 DNA polymerase III su 97.6 0.0013 2.9E-08 78.5 17.2 184 167-371 12-217 (563)
148 TIGR00362 DnaA chromosomal rep 97.6 0.0014 3E-08 76.3 17.2 154 194-370 136-306 (405)
149 KOG2982 Uncharacterized conser 97.6 1.5E-05 3.4E-10 82.4 0.8 184 726-912 70-267 (418)
150 PRK12422 chromosomal replicati 97.6 0.0008 1.7E-08 78.2 14.9 149 195-366 142-305 (445)
151 PF12799 LRR_4: Leucine Rich r 97.6 4.7E-05 1E-09 56.9 3.1 40 850-889 1-40 (44)
152 PRK00149 dnaA chromosomal repl 97.6 0.0012 2.6E-08 77.9 16.6 154 194-370 148-318 (450)
153 PRK05707 DNA polymerase III su 97.6 0.0011 2.5E-08 73.8 15.3 93 276-374 106-203 (328)
154 PRK05563 DNA polymerase III su 97.6 0.0019 4.1E-08 77.6 18.0 189 167-369 12-215 (559)
155 TIGR02880 cbbX_cfxQ probable R 97.6 0.0014 3E-08 71.9 15.0 127 196-343 60-208 (284)
156 PRK07399 DNA polymerase III su 97.6 0.0029 6.3E-08 70.2 17.5 192 171-374 4-221 (314)
157 TIGR03346 chaperone_ClpB ATP-d 97.5 0.0013 2.9E-08 83.3 16.6 168 150-343 155-349 (852)
158 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.3E-10 93.9 2.1 148 750-903 122-284 (699)
159 KOG4579 Leucine-rich repeat (L 97.5 5.9E-06 1.3E-10 75.8 -3.4 85 800-889 29-116 (177)
160 PRK10865 protein disaggregatio 97.5 0.0009 2E-08 84.5 14.6 169 150-343 160-354 (857)
161 CHL00095 clpC Clp protease ATP 97.5 0.00063 1.4E-08 86.0 13.2 167 150-341 161-352 (821)
162 PRK08116 hypothetical protein; 97.5 0.00039 8.5E-09 75.3 9.3 34 195-228 115-148 (268)
163 COG5238 RNA1 Ran GTPase-activa 97.5 5.5E-05 1.2E-09 77.5 2.2 92 797-888 156-257 (388)
164 CHL00176 ftsH cell division pr 97.5 0.0014 3E-08 79.4 14.4 172 169-366 181-386 (638)
165 PRK14965 DNA polymerase III su 97.4 0.0014 3E-08 79.2 14.2 183 167-374 12-221 (576)
166 TIGR00767 rho transcription te 97.4 0.00012 2.6E-09 81.5 4.7 93 194-289 168-268 (415)
167 PRK12377 putative replication 97.4 0.0028 6.1E-08 67.4 14.9 35 194-228 101-135 (248)
168 PRK14086 dnaA chromosomal repl 97.4 0.0032 7E-08 74.5 16.7 148 195-367 315-481 (617)
169 COG1222 RPT1 ATP-dependent 26S 97.4 0.0016 3.5E-08 70.1 12.8 193 170-393 150-392 (406)
170 CHL00181 cbbX CbbX; Provisiona 97.4 0.0056 1.2E-07 67.1 17.2 130 195-345 60-211 (287)
171 KOG2227 Pre-initiation complex 97.4 0.0021 4.6E-08 71.5 13.7 202 169-375 148-373 (529)
172 COG2255 RuvB Holliday junction 97.4 0.002 4.3E-08 67.2 12.5 257 167-462 22-311 (332)
173 COG5238 RNA1 Ran GTPase-activa 97.4 3.5E-05 7.5E-10 78.9 -0.3 34 591-624 29-67 (388)
174 TIGR01241 FtsH_fam ATP-depende 97.4 0.0019 4.1E-08 77.1 14.3 173 169-367 53-259 (495)
175 COG1373 Predicted ATPase (AAA+ 97.4 0.002 4.4E-08 74.0 13.7 161 179-374 25-192 (398)
176 KOG4579 Leucine-rich repeat (L 97.4 1.7E-05 3.7E-10 72.8 -2.6 86 798-889 53-139 (177)
177 PRK07952 DNA replication prote 97.3 0.0046 1E-07 65.6 14.7 35 194-228 99-133 (244)
178 PF12799 LRR_4: Leucine Rich r 97.3 0.00023 4.9E-09 53.2 3.2 34 799-832 2-35 (44)
179 PRK06921 hypothetical protein; 97.3 0.00068 1.5E-08 73.3 8.2 36 194-229 117-153 (266)
180 KOG1644 U2-associated snRNP A' 97.3 0.00035 7.6E-09 69.0 5.2 98 800-903 44-149 (233)
181 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3.1E-08 80.7 11.5 168 150-343 168-362 (758)
182 PF00004 AAA: ATPase family as 97.2 0.0028 6.1E-08 60.7 11.3 23 197-219 1-23 (132)
183 COG0466 Lon ATP-dependent Lon 97.2 0.012 2.6E-07 69.3 17.6 159 170-344 322-509 (782)
184 PF05673 DUF815: Protein of un 97.2 0.003 6.5E-08 65.6 11.6 56 167-222 23-80 (249)
185 PRK08181 transposase; Validate 97.2 0.0013 2.7E-08 71.0 9.0 34 195-228 107-140 (269)
186 PRK08769 DNA polymerase III su 97.2 0.024 5.2E-07 62.7 19.1 93 275-375 112-209 (319)
187 TIGR00763 lon ATP-dependent pr 97.2 0.01 2.3E-07 74.6 18.5 52 171-222 320-375 (775)
188 smart00382 AAA ATPases associa 97.1 0.00081 1.8E-08 65.2 6.5 34 195-228 3-36 (148)
189 PRK09183 transposase/IS protei 97.1 0.0016 3.5E-08 70.3 9.1 35 194-228 102-136 (259)
190 TIGR00602 rad24 checkpoint pro 97.1 0.0058 1.2E-07 73.5 14.3 53 167-219 80-135 (637)
191 CHL00195 ycf46 Ycf46; Provisio 97.1 0.0069 1.5E-07 71.0 14.2 153 170-345 227-407 (489)
192 KOG3678 SARM protein (with ste 97.1 0.0019 4.2E-08 70.6 8.8 129 7-167 624-761 (832)
193 KOG0991 Replication factor C, 97.0 0.0033 7.2E-08 63.3 9.4 50 167-218 23-72 (333)
194 PRK06526 transposase; Provisio 97.0 0.0015 3.1E-08 70.1 7.4 34 194-227 98-131 (254)
195 PRK08058 DNA polymerase III su 97.0 0.014 3E-07 65.6 15.6 148 172-341 6-180 (329)
196 TIGR01243 CDC48 AAA family ATP 97.0 0.0069 1.5E-07 76.0 14.2 174 169-368 176-381 (733)
197 PRK10787 DNA-binding ATP-depen 97.0 0.024 5.2E-07 70.7 18.5 77 146-222 286-377 (784)
198 KOG3665 ZYG-1-like serine/thre 97.0 0.00044 9.6E-09 84.3 3.3 125 773-904 121-260 (699)
199 COG3267 ExeA Type II secretory 96.9 0.023 5E-07 58.9 14.8 180 192-376 49-247 (269)
200 KOG1644 U2-associated snRNP A' 96.9 0.001 2.2E-08 65.8 4.8 79 820-905 41-124 (233)
201 PRK10536 hypothetical protein; 96.9 0.0021 4.6E-08 67.6 7.4 53 170-226 54-108 (262)
202 PRK06835 DNA replication prote 96.9 0.0021 4.6E-08 71.4 7.7 35 195-229 184-218 (329)
203 TIGR01243 CDC48 AAA family ATP 96.9 0.009 2E-07 75.0 13.9 172 170-368 452-657 (733)
204 PRK06871 DNA polymerase III su 96.9 0.033 7.2E-07 61.7 16.4 90 275-371 106-200 (325)
205 PRK07993 DNA polymerase III su 96.8 0.027 5.8E-07 63.1 15.8 91 275-372 107-202 (334)
206 TIGR02640 gas_vesic_GvpN gas v 96.8 0.029 6.3E-07 60.9 15.7 38 180-221 11-48 (262)
207 PRK06090 DNA polymerase III su 96.8 0.039 8.5E-07 61.0 16.6 89 276-374 108-201 (319)
208 COG0593 DnaA ATPase involved i 96.8 0.0091 2E-07 67.3 11.8 131 193-345 112-259 (408)
209 KOG0731 AAA+-type ATPase conta 96.8 0.023 4.9E-07 68.4 15.5 179 168-371 308-521 (774)
210 PRK11331 5-methylcytosine-spec 96.8 0.0026 5.6E-08 72.4 7.4 54 171-228 175-230 (459)
211 COG1223 Predicted ATPase (AAA+ 96.8 0.016 3.5E-07 59.5 12.0 172 170-367 120-318 (368)
212 PF05621 TniB: Bacterial TniB 96.7 0.021 4.6E-07 61.4 13.1 192 172-372 35-259 (302)
213 PF01695 IstB_IS21: IstB-like 96.7 0.002 4.4E-08 65.2 5.2 35 194-228 47-81 (178)
214 PRK10865 protein disaggregatio 96.7 0.019 4.2E-07 72.7 15.0 51 170-220 567-624 (857)
215 COG0542 clpA ATP-binding subun 96.7 0.012 2.6E-07 71.2 12.5 117 171-298 491-617 (786)
216 PRK08118 topology modulation p 96.7 0.0013 2.7E-08 66.0 3.6 32 196-227 3-37 (167)
217 PF10443 RNA12: RNA12 protein; 96.7 0.15 3.2E-06 57.5 20.0 100 276-379 148-283 (431)
218 PF13177 DNA_pol3_delta2: DNA 96.7 0.014 3E-07 58.2 10.7 137 175-331 1-162 (162)
219 KOG1947 Leucine rich repeat pr 96.7 0.00022 4.8E-09 85.6 -2.7 142 749-908 268-415 (482)
220 COG1484 DnaC DNA replication p 96.6 0.005 1.1E-07 66.1 7.8 36 193-228 104-139 (254)
221 PLN00020 ribulose bisphosphate 96.6 0.029 6.4E-07 61.8 13.4 31 192-222 146-176 (413)
222 PRK09361 radB DNA repair and r 96.6 0.0046 1E-07 65.7 7.4 49 182-230 11-59 (225)
223 cd01133 F1-ATPase_beta F1 ATP 96.6 0.005 1.1E-07 65.9 7.3 93 194-288 69-175 (274)
224 PRK00771 signal recognition pa 96.6 0.068 1.5E-06 61.8 16.9 29 193-221 94-122 (437)
225 TIGR02639 ClpA ATP-dependent C 96.5 0.047 1E-06 68.4 16.7 49 171-219 454-509 (731)
226 KOG0733 Nuclear AAA ATPase (VC 96.5 0.021 4.5E-07 65.7 11.8 152 170-344 189-375 (802)
227 PRK11889 flhF flagellar biosyn 96.5 0.046 1E-06 61.1 14.3 36 193-228 240-275 (436)
228 PF13207 AAA_17: AAA domain; P 96.5 0.0023 5E-08 60.4 3.8 23 196-218 1-23 (121)
229 PRK04132 replication factor C 96.5 0.06 1.3E-06 66.8 16.7 148 202-370 574-727 (846)
230 TIGR03345 VI_ClpV1 type VI sec 96.5 0.032 7E-07 70.5 14.9 51 171-221 566-623 (852)
231 COG2812 DnaX DNA polymerase II 96.5 0.016 3.5E-07 67.4 11.2 185 167-367 12-213 (515)
232 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 68.2 1.7 63 846-908 61-130 (260)
233 PF07728 AAA_5: AAA domain (dy 96.5 0.0026 5.5E-08 61.9 3.8 22 197-218 2-23 (139)
234 COG0470 HolB ATPase involved i 96.4 0.032 6.9E-07 63.0 13.3 139 172-331 2-169 (325)
235 PRK06964 DNA polymerase III su 96.4 0.17 3.7E-06 56.6 18.4 90 275-374 131-225 (342)
236 PF02562 PhoH: PhoH-like prote 96.4 0.0044 9.6E-08 63.4 5.5 126 178-315 7-157 (205)
237 PRK08939 primosomal protein Dn 96.4 0.011 2.5E-07 65.1 9.0 35 194-228 156-190 (306)
238 PF04665 Pox_A32: Poxvirus A32 96.4 0.0019 4.2E-08 67.6 2.8 34 195-228 14-47 (241)
239 KOG1947 Leucine rich repeat pr 96.4 0.00026 5.6E-09 84.9 -4.3 214 680-931 186-415 (482)
240 KOG0735 AAA+-type ATPase [Post 96.4 0.026 5.6E-07 66.1 11.6 157 194-374 431-616 (952)
241 KOG0730 AAA+-type ATPase [Post 96.4 0.04 8.7E-07 64.4 13.2 154 171-347 434-619 (693)
242 cd01120 RecA-like_NTPases RecA 96.3 0.0093 2E-07 59.5 7.2 34 196-229 1-34 (165)
243 TIGR03346 chaperone_ClpB ATP-d 96.3 0.034 7.3E-07 70.8 13.7 51 171-221 565-622 (852)
244 KOG2739 Leucine-rich acidic nu 96.3 0.0028 6.1E-08 65.6 3.3 114 749-866 42-159 (260)
245 KOG2004 Mitochondrial ATP-depe 96.3 0.01 2.2E-07 69.4 8.1 154 171-343 411-596 (906)
246 cd01394 radB RadB. The archaea 96.3 0.0087 1.9E-07 63.2 7.2 49 181-229 6-54 (218)
247 PRK14974 cell division protein 96.3 0.053 1.1E-06 60.4 13.5 29 193-221 139-167 (336)
248 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0034 7.4E-08 69.5 3.8 50 171-220 51-104 (361)
249 COG2607 Predicted ATPase (AAA+ 96.3 0.052 1.1E-06 55.5 11.8 118 169-314 58-183 (287)
250 PHA00729 NTP-binding motif con 96.3 0.018 3.9E-07 59.8 8.8 27 193-219 16-42 (226)
251 KOG0741 AAA+-type ATPase [Post 96.3 0.023 5E-07 64.1 10.1 128 192-341 536-684 (744)
252 TIGR02237 recomb_radB DNA repa 96.2 0.0068 1.5E-07 63.6 5.7 45 186-230 4-48 (209)
253 PRK11034 clpA ATP-dependent Cl 96.2 0.024 5.2E-07 70.2 11.1 49 171-219 458-513 (758)
254 KOG2123 Uncharacterized conser 96.2 0.00022 4.7E-09 73.5 -5.5 96 797-900 18-123 (388)
255 PRK12724 flagellar biosynthesi 96.1 0.25 5.3E-06 56.3 17.7 25 194-218 223-247 (432)
256 TIGR01425 SRP54_euk signal rec 96.1 0.17 3.6E-06 58.1 16.6 29 193-221 99-127 (429)
257 cd01121 Sms Sms (bacterial rad 96.1 0.019 4.2E-07 65.1 9.1 49 181-229 69-117 (372)
258 COG0488 Uup ATPase components 96.1 0.076 1.6E-06 62.9 14.2 57 268-329 449-511 (530)
259 cd01131 PilT Pilus retraction 96.1 0.018 4E-07 59.5 8.2 109 195-316 2-111 (198)
260 COG1618 Predicted nucleotide k 96.1 0.0062 1.3E-07 58.3 4.1 38 195-232 6-45 (179)
261 TIGR00064 ftsY signal recognit 96.1 0.024 5.2E-07 61.6 9.3 37 192-228 70-106 (272)
262 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.012 2.6E-07 57.6 6.1 132 195-328 3-153 (159)
263 TIGR02902 spore_lonB ATP-depen 96.1 0.047 1E-06 65.4 12.4 49 168-218 62-110 (531)
264 PRK06696 uridine kinase; Valid 96.1 0.009 1.9E-07 63.2 5.7 46 176-221 3-49 (223)
265 CHL00095 clpC Clp protease ATP 96.0 0.1 2.2E-06 66.3 15.9 117 171-298 509-635 (821)
266 PRK08699 DNA polymerase III su 96.0 0.19 4.2E-06 56.1 16.2 84 277-370 114-202 (325)
267 KOG2123 Uncharacterized conser 96.0 0.00038 8.2E-09 71.8 -4.8 99 773-879 18-123 (388)
268 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.016 3.4E-07 56.6 6.5 109 194-327 26-140 (144)
269 KOG1514 Origin recognition com 96.0 0.11 2.3E-06 61.3 14.0 198 169-375 394-622 (767)
270 PRK07667 uridine kinase; Provi 96.0 0.014 3.1E-07 60.1 6.5 42 180-221 3-44 (193)
271 PRK04296 thymidine kinase; Pro 95.9 0.011 2.3E-07 60.8 5.4 112 195-315 3-117 (190)
272 PRK12608 transcription termina 95.9 0.0069 1.5E-07 67.4 4.2 105 181-288 121-232 (380)
273 PRK10733 hflB ATP-dependent me 95.9 0.058 1.3E-06 66.3 12.6 128 195-345 186-337 (644)
274 TIGR00959 ffh signal recogniti 95.9 0.29 6.3E-06 56.5 17.2 27 193-219 98-124 (428)
275 PRK10867 signal recognition pa 95.8 0.19 4.1E-06 58.1 15.4 29 193-221 99-127 (433)
276 PF00448 SRP54: SRP54-type pro 95.8 0.015 3.4E-07 59.7 6.0 35 194-228 1-35 (196)
277 cd01393 recA_like RecA is a b 95.8 0.031 6.6E-07 59.4 8.3 49 182-230 7-61 (226)
278 PRK05703 flhF flagellar biosyn 95.8 0.17 3.8E-06 58.6 15.0 35 194-228 221-257 (424)
279 PRK06762 hypothetical protein; 95.7 0.039 8.5E-07 55.4 8.6 24 195-218 3-26 (166)
280 KOG2228 Origin recognition com 95.7 0.099 2.1E-06 56.2 11.5 171 170-342 23-218 (408)
281 PF01583 APS_kinase: Adenylyls 95.7 0.016 3.4E-07 56.6 5.3 36 194-229 2-37 (156)
282 COG1066 Sms Predicted ATP-depe 95.7 0.047 1E-06 60.5 9.3 100 180-287 79-179 (456)
283 PRK06067 flagellar accessory p 95.7 0.036 7.8E-07 59.2 8.5 49 181-229 12-60 (234)
284 KOG1969 DNA replication checkp 95.7 0.026 5.6E-07 66.4 7.6 76 192-288 324-399 (877)
285 COG0572 Udk Uridine kinase [Nu 95.6 0.015 3.2E-07 59.6 4.9 31 192-222 6-36 (218)
286 cd00983 recA RecA is a bacter 95.6 0.028 6.2E-07 61.9 7.3 50 181-230 41-91 (325)
287 PF13238 AAA_18: AAA domain; P 95.6 0.011 2.4E-07 56.4 3.5 22 197-218 1-22 (129)
288 PRK05541 adenylylsulfate kinas 95.5 0.015 3.3E-07 59.0 4.6 35 194-228 7-41 (176)
289 PRK10416 signal recognition pa 95.5 0.042 9.1E-07 61.0 8.3 29 193-221 113-141 (318)
290 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.023 5E-07 60.8 6.2 48 183-230 8-61 (235)
291 KOG0734 AAA+-type ATPase conta 95.5 0.051 1.1E-06 61.6 8.7 50 170-219 303-362 (752)
292 PRK15455 PrkA family serine pr 95.5 0.015 3.3E-07 67.6 4.8 51 170-220 75-129 (644)
293 KOG0728 26S proteasome regulat 95.4 0.32 6.8E-06 49.9 13.2 143 175-344 151-332 (404)
294 COG0542 clpA ATP-binding subun 95.4 0.1 2.2E-06 63.6 11.6 152 170-342 169-345 (786)
295 cd01124 KaiC KaiC is a circadi 95.4 0.095 2.1E-06 53.7 10.2 33 197-229 2-34 (187)
296 PRK11823 DNA repair protein Ra 95.4 0.055 1.2E-06 63.3 9.2 50 180-229 66-115 (446)
297 COG4088 Predicted nucleotide k 95.4 0.03 6.6E-07 55.7 5.7 29 195-223 2-30 (261)
298 PF14532 Sigma54_activ_2: Sigm 95.3 0.017 3.6E-07 56.0 4.1 45 174-218 1-45 (138)
299 PF00485 PRK: Phosphoribulokin 95.3 0.015 3.2E-07 60.1 3.9 26 196-221 1-26 (194)
300 TIGR00416 sms DNA repair prote 95.3 0.056 1.2E-06 63.2 9.0 50 180-229 80-129 (454)
301 cd03214 ABC_Iron-Siderophores_ 95.3 0.04 8.7E-07 56.1 6.8 133 194-328 25-172 (180)
302 cd03228 ABCC_MRP_Like The MRP 95.3 0.066 1.4E-06 54.0 8.4 126 194-327 28-167 (171)
303 PRK07261 topology modulation p 95.3 0.013 2.8E-07 59.1 3.1 23 196-218 2-24 (171)
304 COG4618 ArpD ABC-type protease 95.2 0.076 1.6E-06 60.3 9.1 21 195-215 363-383 (580)
305 TIGR02012 tigrfam_recA protein 95.2 0.038 8.2E-07 60.9 6.7 49 182-230 42-91 (321)
306 KOG0744 AAA+-type ATPase [Post 95.2 0.11 2.4E-06 55.5 9.7 35 194-228 177-215 (423)
307 cd03222 ABC_RNaseL_inhibitor T 95.2 0.035 7.5E-07 56.1 5.9 113 195-328 26-146 (177)
308 PF03215 Rad17: Rad17 cell cyc 95.1 0.14 3E-06 60.7 11.5 56 171-228 19-77 (519)
309 cd03216 ABC_Carb_Monos_I This 95.1 0.032 6.9E-07 55.8 5.4 125 194-328 26-156 (163)
310 PF07726 AAA_3: ATPase family 95.1 0.012 2.7E-07 54.7 2.2 29 197-225 2-30 (131)
311 KOG0743 AAA+-type ATPase [Post 95.1 0.19 4.1E-06 56.7 11.7 146 195-377 236-412 (457)
312 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.12 2.5E-06 52.9 9.7 23 196-218 1-23 (183)
313 KOG0651 26S proteasome regulat 95.1 0.075 1.6E-06 56.4 8.1 30 193-222 165-194 (388)
314 PRK09354 recA recombinase A; P 95.1 0.05 1.1E-06 60.5 7.2 50 181-230 46-96 (349)
315 TIGR02858 spore_III_AA stage I 95.1 0.094 2E-06 56.7 9.2 117 193-316 110-231 (270)
316 PRK12723 flagellar biosynthesi 95.1 0.13 2.8E-06 58.5 10.6 27 193-219 173-199 (388)
317 PTZ00301 uridine kinase; Provi 95.0 0.022 4.7E-07 59.2 3.8 29 194-222 3-31 (210)
318 PF13604 AAA_30: AAA domain; P 95.0 0.19 4.2E-06 51.8 10.8 117 180-317 7-134 (196)
319 PRK12727 flagellar biosynthesi 95.0 0.15 3.2E-06 59.5 10.8 29 193-221 349-377 (559)
320 COG4608 AppF ABC-type oligopep 95.0 0.1 2.2E-06 55.1 8.6 123 194-319 39-175 (268)
321 cd02019 NK Nucleoside/nucleoti 94.9 0.021 4.6E-07 47.6 2.9 23 196-218 1-23 (69)
322 PF00910 RNA_helicase: RNA hel 94.9 0.017 3.7E-07 53.1 2.5 26 197-222 1-26 (107)
323 COG1875 NYN ribonuclease and A 94.9 0.21 4.6E-06 54.4 10.9 25 191-215 242-266 (436)
324 cd03223 ABCD_peroxisomal_ALDP 94.9 0.075 1.6E-06 53.3 7.3 123 194-327 27-160 (166)
325 TIGR03499 FlhF flagellar biosy 94.9 0.081 1.8E-06 58.0 8.1 29 193-221 193-221 (282)
326 TIGR03881 KaiC_arch_4 KaiC dom 94.8 0.11 2.5E-06 55.1 8.9 49 182-230 8-56 (229)
327 PRK03839 putative kinase; Prov 94.8 0.022 4.7E-07 58.1 3.2 24 196-219 2-25 (180)
328 PRK13531 regulatory ATPase Rav 94.8 0.046 9.9E-07 63.0 6.0 46 171-220 20-65 (498)
329 PRK04040 adenylate kinase; Pro 94.8 0.029 6.3E-07 57.3 4.1 29 195-223 3-31 (188)
330 PRK05480 uridine/cytidine kina 94.8 0.027 5.8E-07 59.0 3.9 26 193-218 5-30 (209)
331 COG2884 FtsE Predicted ATPase 94.7 0.15 3.3E-06 50.5 8.6 51 267-319 146-202 (223)
332 TIGR00708 cobA cob(I)alamin ad 94.7 0.16 3.5E-06 50.5 9.0 131 195-329 6-156 (173)
333 cd03238 ABC_UvrA The excision 94.7 0.095 2.1E-06 52.9 7.6 22 194-215 21-42 (176)
334 TIGR02238 recomb_DMC1 meiotic 94.7 0.11 2.3E-06 57.7 8.5 50 181-230 83-138 (313)
335 PRK08233 hypothetical protein; 94.7 0.024 5.2E-07 57.9 3.2 26 194-219 3-28 (182)
336 cd03247 ABCC_cytochrome_bd The 94.6 0.09 2E-06 53.4 7.3 126 194-328 28-170 (178)
337 cd03229 ABC_Class3 This class 94.6 0.045 9.7E-07 55.7 5.1 34 194-228 26-59 (178)
338 TIGR00235 udk uridine kinase. 94.6 0.034 7.3E-07 58.1 4.3 28 192-219 4-31 (207)
339 COG0464 SpoVK ATPases of the A 94.6 0.14 3E-06 61.5 10.0 152 171-345 242-425 (494)
340 cd03230 ABC_DR_subfamily_A Thi 94.6 0.082 1.8E-06 53.4 6.9 128 194-328 26-169 (173)
341 PRK00625 shikimate kinase; Pro 94.6 0.025 5.4E-07 56.8 3.1 24 196-219 2-25 (173)
342 PRK05986 cob(I)alamin adenolsy 94.6 0.067 1.5E-06 53.9 5.9 120 194-314 22-158 (191)
343 cd01129 PulE-GspE PulE/GspE Th 94.6 0.12 2.6E-06 56.0 8.4 100 180-295 69-168 (264)
344 PRK12726 flagellar biosynthesi 94.5 0.52 1.1E-05 52.8 13.3 36 193-228 205-240 (407)
345 TIGR01420 pilT_fam pilus retra 94.5 0.09 1.9E-06 59.5 7.7 106 195-313 123-229 (343)
346 PF13671 AAA_33: AAA domain; P 94.5 0.032 7E-07 54.3 3.6 24 196-219 1-24 (143)
347 KOG0652 26S proteasome regulat 94.5 0.63 1.4E-05 48.1 12.6 162 171-359 171-372 (424)
348 cd02027 APSK Adenosine 5'-phos 94.5 0.17 3.6E-06 49.7 8.6 24 196-219 1-24 (149)
349 cd00267 ABC_ATPase ABC (ATP-bi 94.5 0.038 8.2E-07 54.9 4.1 123 195-328 26-154 (157)
350 PF03308 ArgK: ArgK protein; 94.5 0.095 2.1E-06 55.0 6.9 41 181-221 16-56 (266)
351 PF00406 ADK: Adenylate kinase 94.5 0.076 1.6E-06 52.3 6.1 20 199-218 1-20 (151)
352 cd03115 SRP The signal recogni 94.5 0.19 4.1E-06 50.7 9.2 26 196-221 2-27 (173)
353 cd03246 ABCC_Protease_Secretio 94.5 0.13 2.9E-06 51.9 8.1 128 194-328 28-169 (173)
354 TIGR03574 selen_PSTK L-seryl-t 94.4 0.17 3.8E-06 54.5 9.4 25 197-221 2-26 (249)
355 KOG0733 Nuclear AAA ATPase (VC 94.4 0.25 5.5E-06 57.2 10.6 128 194-345 545-694 (802)
356 PF08423 Rad51: Rad51; InterP 94.4 0.05 1.1E-06 58.6 5.0 37 181-217 25-61 (256)
357 KOG2035 Replication factor C, 94.4 0.66 1.4E-05 48.7 12.6 226 170-412 12-282 (351)
358 PRK05973 replicative DNA helic 94.4 0.19 4.2E-06 52.9 9.1 36 193-228 63-98 (237)
359 COG3910 Predicted ATPase [Gene 94.4 0.37 7.9E-06 47.7 10.1 61 268-329 139-203 (233)
360 PF08433 KTI12: Chromatin asso 94.3 0.12 2.5E-06 56.0 7.7 34 195-228 2-35 (270)
361 cd03233 ABC_PDR_domain1 The pl 94.3 0.13 2.8E-06 53.5 7.8 26 194-219 33-58 (202)
362 COG0563 Adk Adenylate kinase a 94.3 0.11 2.4E-06 52.4 7.0 23 196-218 2-24 (178)
363 cd01858 NGP_1 NGP-1. Autoanti 94.3 0.37 8E-06 47.7 10.6 23 194-216 102-124 (157)
364 cd01125 repA Hexameric Replica 94.2 0.33 7.1E-06 52.0 10.9 24 196-219 3-26 (239)
365 PRK04301 radA DNA repair and r 94.2 0.093 2E-06 58.8 6.9 50 181-230 89-144 (317)
366 cd01122 GP4d_helicase GP4d_hel 94.2 0.26 5.6E-06 53.9 10.4 36 194-229 30-66 (271)
367 PRK06547 hypothetical protein; 94.2 0.042 9E-07 55.2 3.7 27 192-218 13-39 (172)
368 COG1121 ZnuC ABC-type Mn/Zn tr 94.2 0.15 3.2E-06 53.8 7.8 57 267-325 148-210 (254)
369 COG0468 RecA RecA/RadA recombi 94.2 0.12 2.5E-06 55.8 7.1 49 183-231 49-97 (279)
370 COG1136 SalX ABC-type antimicr 94.2 0.21 4.5E-06 52.0 8.6 60 267-328 151-216 (226)
371 PRK00131 aroK shikimate kinase 94.2 0.036 7.8E-07 56.1 3.1 26 194-219 4-29 (175)
372 COG1224 TIP49 DNA helicase TIP 94.1 0.079 1.7E-06 57.3 5.6 58 168-225 36-96 (450)
373 PRK07132 DNA polymerase III su 94.1 3 6.6E-05 45.9 18.1 165 181-374 6-185 (299)
374 PRK13947 shikimate kinase; Pro 94.1 0.036 7.8E-07 55.9 3.0 25 196-220 3-27 (171)
375 KOG1970 Checkpoint RAD17-RFC c 94.1 0.2 4.2E-06 57.5 8.8 41 178-218 89-134 (634)
376 TIGR01360 aden_kin_iso1 adenyl 94.1 0.041 8.9E-07 56.5 3.4 26 193-218 2-27 (188)
377 TIGR03575 selen_PSTK_euk L-ser 94.0 0.13 2.9E-06 57.2 7.4 23 197-219 2-24 (340)
378 cd01130 VirB11-like_ATPase Typ 94.0 0.043 9.4E-07 56.2 3.3 95 194-296 25-120 (186)
379 cd03232 ABC_PDR_domain2 The pl 94.0 0.16 3.4E-06 52.4 7.5 23 194-216 33-55 (192)
380 COG1428 Deoxynucleoside kinase 94.0 0.043 9.2E-07 55.5 3.1 26 194-219 4-29 (216)
381 PRK09270 nucleoside triphospha 94.0 0.074 1.6E-06 56.5 5.2 32 191-222 30-61 (229)
382 PF10236 DAP3: Mitochondrial r 93.9 2.4 5.2E-05 47.2 17.2 48 324-371 258-306 (309)
383 COG5635 Predicted NTPase (NACH 93.9 0.79 1.7E-05 58.4 15.1 222 195-425 223-481 (824)
384 COG1120 FepC ABC-type cobalami 93.9 0.19 4.2E-06 53.3 8.0 61 267-328 147-213 (258)
385 CHL00206 ycf2 Ycf2; Provisiona 93.9 0.3 6.4E-06 64.5 11.1 28 193-220 1629-1656(2281)
386 PRK00889 adenylylsulfate kinas 93.9 0.078 1.7E-06 53.7 5.0 27 194-220 4-30 (175)
387 KOG0739 AAA+-type ATPase [Post 93.9 2.7 5.8E-05 44.7 15.9 51 170-220 132-192 (439)
388 cd03237 ABC_RNaseL_inhibitor_d 93.9 0.21 4.6E-06 53.6 8.5 24 194-217 25-48 (246)
389 cd03278 ABC_SMC_barmotin Barmo 93.8 0.37 8E-06 49.8 9.9 21 196-216 24-44 (197)
390 PF03205 MobB: Molybdopterin g 93.8 0.094 2E-06 50.7 5.1 34 195-228 1-34 (140)
391 cd00227 CPT Chloramphenicol (C 93.8 0.049 1.1E-06 55.2 3.3 26 195-220 3-28 (175)
392 TIGR00150 HI0065_YjeE ATPase, 93.8 0.071 1.5E-06 50.6 4.1 25 194-218 22-46 (133)
393 COG0488 Uup ATPase components 93.8 0.12 2.6E-06 61.3 6.9 57 268-329 163-225 (530)
394 cd03244 ABCC_MRP_domain2 Domai 93.8 0.44 9.6E-06 50.3 10.7 23 194-216 30-52 (221)
395 PF06068 TIP49: TIP49 C-termin 93.8 0.08 1.7E-06 58.3 5.0 59 169-227 22-83 (398)
396 cd02028 UMPK_like Uridine mono 93.8 0.071 1.5E-06 54.1 4.4 26 196-221 1-26 (179)
397 PRK15429 formate hydrogenlyase 93.8 0.17 3.8E-06 63.1 8.7 50 169-218 374-423 (686)
398 PRK14722 flhF flagellar biosyn 93.7 0.21 4.6E-06 56.3 8.4 35 194-228 137-173 (374)
399 PHA02244 ATPase-like protein 93.7 0.19 4E-06 56.1 7.8 47 171-221 96-146 (383)
400 PRK03846 adenylylsulfate kinas 93.7 0.09 2E-06 54.5 5.1 36 193-228 23-58 (198)
401 KOG0729 26S proteasome regulat 93.6 0.31 6.7E-06 50.4 8.5 56 171-231 177-243 (435)
402 TIGR02655 circ_KaiC circadian 93.6 0.2 4.4E-06 59.5 8.5 50 180-229 249-298 (484)
403 COG0467 RAD55 RecA-superfamily 93.5 0.16 3.5E-06 55.2 7.0 44 186-229 15-58 (260)
404 TIGR00390 hslU ATP-dependent p 93.5 0.073 1.6E-06 60.1 4.3 51 172-222 13-75 (441)
405 PRK06995 flhF flagellar biosyn 93.5 0.7 1.5E-05 54.0 12.4 27 194-220 256-282 (484)
406 PF07724 AAA_2: AAA domain (Cd 93.5 0.043 9.2E-07 55.1 2.2 42 194-236 3-45 (171)
407 cd03215 ABC_Carb_Monos_II This 93.4 0.19 4.2E-06 51.2 7.0 25 194-218 26-50 (182)
408 cd02025 PanK Pantothenate kina 93.4 0.054 1.2E-06 57.0 2.9 25 196-220 1-25 (220)
409 COG0529 CysC Adenylylsulfate k 93.4 0.12 2.5E-06 50.6 4.8 35 193-227 22-56 (197)
410 cd02024 NRK1 Nicotinamide ribo 93.4 0.054 1.2E-06 55.0 2.8 23 196-218 1-23 (187)
411 cd03253 ABCC_ATM1_transporter 93.4 0.4 8.7E-06 51.2 9.7 23 194-216 27-49 (236)
412 cd00071 GMPK Guanosine monopho 93.3 0.05 1.1E-06 52.5 2.3 27 196-222 1-27 (137)
413 PRK13543 cytochrome c biogenes 93.3 0.28 6.2E-06 51.5 8.2 23 194-216 37-59 (214)
414 PRK05439 pantothenate kinase; 93.3 0.1 2.3E-06 57.3 5.0 30 191-220 83-112 (311)
415 PRK13949 shikimate kinase; Pro 93.3 0.06 1.3E-06 54.1 2.9 24 196-219 3-26 (169)
416 PRK09280 F0F1 ATP synthase sub 93.3 0.21 4.5E-06 57.7 7.5 93 194-288 144-250 (463)
417 cd03240 ABC_Rad50 The catalyti 93.3 0.39 8.4E-06 49.9 9.0 20 196-215 24-43 (204)
418 cd03217 ABC_FeS_Assembly ABC-t 93.3 0.3 6.6E-06 50.6 8.2 24 194-217 26-49 (200)
419 KOG0066 eIF2-interacting prote 93.2 1.7 3.8E-05 48.3 13.9 23 194-216 613-635 (807)
420 PRK06217 hypothetical protein; 93.2 0.056 1.2E-06 55.2 2.7 24 196-219 3-26 (183)
421 TIGR03877 thermo_KaiC_1 KaiC d 93.2 0.22 4.7E-06 53.3 7.3 48 182-229 9-56 (237)
422 COG4240 Predicted kinase [Gene 93.2 0.23 5E-06 50.4 6.7 86 192-278 48-135 (300)
423 cd02020 CMPK Cytidine monophos 93.2 0.06 1.3E-06 52.6 2.8 24 196-219 1-24 (147)
424 cd01857 HSR1_MMR1 HSR1/MMR1. 93.2 0.47 1E-05 46.1 9.0 36 39-75 3-38 (141)
425 cd02023 UMPK Uridine monophosp 93.2 0.061 1.3E-06 55.8 2.9 23 196-218 1-23 (198)
426 PLN03187 meiotic recombination 93.2 0.15 3.3E-06 57.0 6.1 50 181-230 113-168 (344)
427 PTZ00494 tuzin-like protein; P 93.2 5.4 0.00012 45.2 17.6 174 151-341 345-542 (664)
428 cd03369 ABCC_NFT1 Domain 2 of 93.1 0.58 1.3E-05 48.8 10.2 23 194-216 34-56 (207)
429 PRK14247 phosphate ABC transpo 93.1 0.24 5.1E-06 53.5 7.5 25 194-218 29-53 (250)
430 COG3640 CooC CO dehydrogenase 93.1 0.12 2.7E-06 52.9 4.7 36 196-231 2-37 (255)
431 PRK05201 hslU ATP-dependent pr 93.1 0.1 2.2E-06 59.1 4.6 52 171-222 15-78 (443)
432 KOG0727 26S proteasome regulat 93.1 0.11 2.5E-06 53.1 4.4 51 172-222 156-217 (408)
433 PF13306 LRR_5: Leucine rich r 93.1 0.18 3.9E-06 47.9 5.8 13 846-858 77-89 (129)
434 PF03266 NTPase_1: NTPase; In 93.1 0.078 1.7E-06 53.0 3.4 24 197-220 2-25 (168)
435 cd00464 SK Shikimate kinase (S 93.1 0.071 1.5E-06 52.6 3.1 22 197-218 2-23 (154)
436 KOG0736 Peroxisome assembly fa 93.1 2.4 5.2E-05 51.0 15.6 95 171-288 672-776 (953)
437 TIGR02322 phosphon_PhnN phosph 93.1 0.074 1.6E-06 54.1 3.2 25 195-219 2-26 (179)
438 PRK14269 phosphate ABC transpo 93.0 0.41 8.8E-06 51.5 9.1 23 195-217 29-51 (246)
439 PRK10751 molybdopterin-guanine 93.0 0.11 2.4E-06 51.8 4.2 28 193-220 5-32 (173)
440 COG0465 HflB ATP-dependent Zn 93.0 0.63 1.4E-05 55.3 11.1 153 168-346 147-336 (596)
441 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.15 3.3E-06 55.2 5.6 38 192-229 34-71 (259)
442 cd02021 GntK Gluconate kinase 92.9 0.069 1.5E-06 52.5 2.7 23 196-218 1-23 (150)
443 COG0396 sufC Cysteine desulfur 92.9 0.35 7.6E-06 49.6 7.6 56 268-325 154-216 (251)
444 COG1703 ArgK Putative periplas 92.9 0.12 2.5E-06 55.1 4.4 43 181-223 38-80 (323)
445 COG1102 Cmk Cytidylate kinase 92.9 0.079 1.7E-06 50.9 2.8 25 196-220 2-26 (179)
446 PRK13948 shikimate kinase; Pro 92.9 0.074 1.6E-06 53.9 2.9 27 193-219 9-35 (182)
447 PRK13946 shikimate kinase; Pro 92.9 0.073 1.6E-06 54.4 2.8 25 195-219 11-35 (184)
448 PF00158 Sigma54_activat: Sigm 92.8 0.083 1.8E-06 52.9 3.1 45 173-217 1-45 (168)
449 PTZ00035 Rad51 protein; Provis 92.8 0.29 6.2E-06 55.0 7.7 39 180-218 104-142 (337)
450 TIGR03600 phage_DnaB phage rep 92.8 0.75 1.6E-05 53.9 11.6 72 173-251 174-246 (421)
451 PF00560 LRR_1: Leucine Rich R 92.8 0.041 8.9E-07 34.2 0.6 21 851-871 1-21 (22)
452 PRK08506 replicative DNA helic 92.8 1 2.2E-05 53.2 12.7 72 173-251 172-243 (472)
453 COG2842 Uncharacterized ATPase 92.8 1.3 2.8E-05 47.5 11.9 159 166-347 67-227 (297)
454 COG2019 AdkA Archaeal adenylat 92.8 0.1 2.2E-06 50.5 3.4 25 194-218 4-28 (189)
455 cd03213 ABCG_EPDR ABCG transpo 92.8 0.35 7.6E-06 49.9 7.8 25 194-218 35-59 (194)
456 TIGR01351 adk adenylate kinase 92.7 0.39 8.5E-06 50.2 8.2 22 197-218 2-23 (210)
457 TIGR02788 VirB11 P-type DNA tr 92.7 0.18 3.9E-06 56.2 5.9 94 194-296 144-238 (308)
458 PRK14249 phosphate ABC transpo 92.7 0.55 1.2E-05 50.7 9.6 25 194-218 30-54 (251)
459 PRK14261 phosphate ABC transpo 92.7 0.56 1.2E-05 50.7 9.7 23 194-216 32-54 (253)
460 PF00625 Guanylate_kin: Guanyl 92.7 0.08 1.7E-06 54.1 2.9 35 194-228 2-36 (183)
461 PRK14259 phosphate ABC transpo 92.7 0.47 1E-05 51.8 9.1 24 194-217 39-62 (269)
462 COG0703 AroK Shikimate kinase 92.7 0.09 1.9E-06 51.9 3.0 28 195-222 3-30 (172)
463 PF00154 RecA: recA bacterial 92.6 0.24 5.2E-06 54.5 6.5 51 180-230 38-89 (322)
464 PRK14530 adenylate kinase; Pro 92.6 0.088 1.9E-06 55.4 3.0 23 196-218 5-27 (215)
465 PLN02318 phosphoribulokinase/u 92.5 0.13 2.8E-06 60.5 4.5 33 186-218 57-89 (656)
466 PRK12339 2-phosphoglycerate ki 92.5 0.11 2.4E-06 53.5 3.6 25 194-218 3-27 (197)
467 KOG0726 26S proteasome regulat 92.5 0.12 2.6E-06 54.1 3.8 54 170-223 184-248 (440)
468 PRK09435 membrane ATPase/prote 92.5 0.23 4.9E-06 55.3 6.3 31 191-221 53-83 (332)
469 COG0194 Gmk Guanylate kinase [ 92.5 0.12 2.6E-06 51.3 3.6 25 194-218 4-28 (191)
470 TIGR02239 recomb_RAD51 DNA rep 92.5 0.26 5.7E-06 54.8 6.8 37 180-216 82-118 (316)
471 COG1936 Predicted nucleotide k 92.5 0.09 1.9E-06 51.3 2.6 20 196-215 2-21 (180)
472 cd03248 ABCC_TAP TAP, the Tran 92.5 0.68 1.5E-05 49.1 9.7 23 194-216 40-62 (226)
473 PF00560 LRR_1: Leucine Rich R 92.4 0.07 1.5E-06 33.1 1.2 20 661-680 2-21 (22)
474 PRK05057 aroK shikimate kinase 92.4 0.088 1.9E-06 53.1 2.7 25 195-219 5-29 (172)
475 PF00437 T2SE: Type II/IV secr 92.4 0.075 1.6E-06 58.2 2.4 123 172-311 105-228 (270)
476 PRK14738 gmk guanylate kinase; 92.4 0.12 2.5E-06 54.0 3.6 29 189-217 8-36 (206)
477 PRK13975 thymidylate kinase; P 92.4 0.11 2.4E-06 53.7 3.5 26 195-220 3-28 (196)
478 PRK15453 phosphoribulokinase; 92.4 0.18 3.9E-06 54.0 5.0 28 193-220 4-31 (290)
479 PRK12678 transcription termina 92.3 0.06 1.3E-06 62.6 1.5 38 194-231 416-454 (672)
480 PF13306 LRR_5: Leucine rich r 92.3 0.43 9.3E-06 45.3 7.3 118 746-875 8-128 (129)
481 COG0714 MoxR-like ATPases [Gen 92.3 0.14 3.1E-06 57.7 4.6 53 171-227 24-76 (329)
482 TIGR00176 mobB molybdopterin-g 92.3 0.15 3.3E-06 50.2 4.2 26 196-221 1-26 (155)
483 KOG0927 Predicted transporter 92.3 0.32 7E-06 55.8 7.1 56 268-327 231-292 (614)
484 cd00544 CobU Adenosylcobinamid 92.3 0.76 1.7E-05 46.0 9.1 31 197-230 2-32 (169)
485 PLN02796 D-glycerate 3-kinase 92.3 0.39 8.4E-06 53.3 7.6 28 193-220 99-126 (347)
486 cd03285 ABC_MSH2_euk MutS2 hom 92.2 0.1 2.2E-06 55.0 3.0 24 193-216 29-52 (222)
487 PRK13657 cyclic beta-1,2-gluca 92.2 0.46 1E-05 58.4 9.2 23 194-216 361-383 (588)
488 COG0541 Ffh Signal recognition 92.2 1.3 2.9E-05 49.9 11.6 40 181-220 80-126 (451)
489 PRK12597 F0F1 ATP synthase sub 92.2 0.37 8E-06 55.9 7.7 91 194-287 143-248 (461)
490 COG3854 SpoIIIAA ncharacterize 92.2 0.65 1.4E-05 47.4 8.3 109 195-314 138-253 (308)
491 PRK13768 GTPase; Provisional 92.2 0.19 4.1E-06 54.2 5.0 27 195-221 3-29 (253)
492 TIGR01650 PD_CobS cobaltochela 92.1 0.26 5.7E-06 54.2 6.1 52 168-223 42-93 (327)
493 COG1124 DppF ABC-type dipeptid 92.1 0.12 2.5E-06 53.5 3.2 23 194-216 33-55 (252)
494 PF01078 Mg_chelatase: Magnesi 92.1 0.18 3.8E-06 51.6 4.4 43 170-216 2-44 (206)
495 KOG0738 AAA+-type ATPase [Post 92.1 0.22 4.8E-06 54.6 5.3 71 146-219 190-270 (491)
496 PF00006 ATP-synt_ab: ATP synt 92.1 0.21 4.6E-06 51.9 5.1 26 195-220 16-41 (215)
497 PRK03731 aroL shikimate kinase 92.1 0.11 2.4E-06 52.3 3.0 24 196-219 4-27 (171)
498 PRK10463 hydrogenase nickel in 92.1 0.24 5.1E-06 53.7 5.5 36 192-227 102-137 (290)
499 TIGR00455 apsK adenylylsulfate 92.1 0.52 1.1E-05 48.1 7.9 27 193-219 17-43 (184)
500 KOG0927 Predicted transporter 92.1 1.8 3.8E-05 50.1 12.5 23 194-216 416-438 (614)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.4e-133 Score=1290.63 Aligned_cols=867 Identities=41% Similarity=0.713 Sum_probs=779.6
Q ss_pred CccccccCchhHHHHHHHHhCCCeEEecCCCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccCC
Q 044535 1 FRGEDTRSNFTSHLYAALCRAKIETFIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTTD 80 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~~ 80 (1085)
|||+|||++|++|||+||.++||+||+|+++++|+.|++++++||++|+++|||||++||+|+|||+||++|++|++ +
T Consensus 19 frg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~~~~--~ 96 (1153)
T PLN03210 19 FSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKE--E 96 (1153)
T ss_pred CCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHHhhh--h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CCcEEEEEEeeecCccccccccchhHHHHHHHHhcCCChhHHHHHHHHHHHHhhcccccccCCC-CcHHHHHHHHHHHHh
Q 044535 81 MGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKPKVLKWRAALTQVANLSGWHLDKQL-GSEAELVEKIVKDVL 159 (1085)
Q Consensus 81 ~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~al~~~~~~~g~~~~~~~-~~e~~~i~~i~~~i~ 159 (1085)
.+++|+||||+|||+|||+|+|.|++||.+|+++ .+.+++++||+||++||+++|| +..+ .+|+++|++||++|.
T Consensus 97 ~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~--~~~~~~~E~~~i~~Iv~~v~ 172 (1153)
T PLN03210 97 LGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGY--HSQNWPNEAKMIEEIANDVL 172 (1153)
T ss_pred cCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCce--ecCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875 3568999999999999999999 5544 489999999999999
Q ss_pred hcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh--hh---h
Q 044535 160 KKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV--RE---E 234 (1085)
Q Consensus 160 ~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~---~ 234 (1085)
+++..+++.+.+++|||+.+++++..+|..+.+++++|+||||||+||||||+++|+++..+|++.+|+... .. .
T Consensus 173 ~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~ 252 (1153)
T PLN03210 173 GKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEI 252 (1153)
T ss_pred HhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhh
Confidence 999998888899999999999999999988888899999999999999999999999999999999998542 11 0
Q ss_pred hh-----h-hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEE
Q 044535 235 SA-----K-RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRII 308 (1085)
Q Consensus 235 s~-----~-~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~Ii 308 (1085)
.. . .....++++++.++.......... ...++++++++|+||||||||+..+|+.+.....|+++||+||
T Consensus 253 ~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 253 YSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEE
Confidence 00 0 112356677777766554332221 2567889999999999999999999999999889999999999
Q ss_pred EEeCChhhhhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHH
Q 044535 309 ITSRDKQVLKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWE 387 (1085)
Q Consensus 309 iTTR~~~v~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~ 387 (1085)
||||+++++.. ++..+|+|+.|++++|++||+++||+...+++++.+++++|+++|+|+||||+++|++|++++.++|+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 99999999876 67899999999999999999999999887778899999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCchHHHHHHhhcCCCCH-hHHHHHhhhhcccCCCCHHHHHHHHhhCCCCcchhhHHHhhccceEEcCCce
Q 044535 388 SALNKLRKNPNMEIQNVLRITYDTLDD-EEKAIFLDIACFFKGDNRDHVTTILDGCGFSTEIGISVLIDKCLITVTDDRL 466 (1085)
Q Consensus 388 ~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~~Li~~~~~~~ 466 (1085)
.+++++++.++.+|..+|++||++|++ .+|.||+++||||.+++++.+..+++++++.++.+++.|++++||+...+++
T Consensus 409 ~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~ 488 (1153)
T PLN03210 409 DMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488 (1153)
T ss_pred HHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeE
Confidence 999999988888999999999999976 5999999999999999999999999999999999999999999999998999
Q ss_pred eechHHHHHhceeeecccCCCCCCcccccccccceeccccCccccceeeccccCCCcceeeeccccccccccccEEEEec
Q 044535 467 LMHDLLQEMGWGIVRQESIKDPGKRSRLWDPQDVCNLFKKNSGSEAVESISLDLSKTSELHLRSDAFVGMHQLRLLKFFS 546 (1085)
Q Consensus 467 ~mHdli~~~~~~i~~~e~~~~~~~~s~l~~~~~i~~~l~~~~~~~~~~~i~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~ 546 (1085)
.|||++|+||++++++++ .++++++++|++++++.++.+++|++.+++|++|++......+...+|.+|++|++|+++.
T Consensus 489 ~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~ 567 (1153)
T PLN03210 489 EMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYT 567 (1153)
T ss_pred EhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEec
Confidence 999999999999999987 7899999999999999999999999999999999999988999999999999999999987
Q ss_pred CCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccccceecccCCC
Q 044535 547 SSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSL 626 (1085)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~ 626 (1085)
+.... ......+++.++..++++||+|+|.+|+++.+|+.|.+.+|++|+|++|++..+|.++..+++|+.|+|++|.
T Consensus 568 ~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~ 645 (1153)
T PLN03210 568 KKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645 (1153)
T ss_pred ccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence 64311 1223467888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCC
Q 044535 627 HLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLT 706 (1085)
Q Consensus 627 ~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~ 706 (1085)
.+..+|+++.+++|++|++++|..+ ..+|..++++++|+.|++++|..+..+|..+ +++
T Consensus 646 ~l~~ip~ls~l~~Le~L~L~~c~~L--------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 646 NLKEIPDLSMATNLETLKLSDCSSL--------------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred CcCcCCccccCCcccEEEecCCCCc--------------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 8899999999999999999999877 6788889999999999999999999999866 699
Q ss_pred CccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCccccc------c-cccccCCCCCcEE
Q 044535 707 SLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKR------V-SSSICKLKSLEIL 779 (1085)
Q Consensus 707 ~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~------l-~~~l~~l~~L~~L 779 (1085)
+|+.|++++|..+..+|....+|+.|++++|.+..+|..+ .+++|+.|.+.++..... + +......++|+.|
T Consensus 705 sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred CCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence 9999999999999999999999999999999999999876 688999999987653211 1 1122345789999
Q ss_pred EeeCCCCCCCcchhhcCCCCccEEEccCCC-CcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecC
Q 044535 780 YLFGCSKLEGLPEILESMERLETLYLAGTP-IKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLN 858 (1085)
Q Consensus 780 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls 858 (1085)
++++|+....+|..++++++|+.|+|++|. +..+|..+ ++++|+.|+|++|..+. .+|. ..++|+.|+|+
T Consensus 784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~----~~p~----~~~nL~~L~Ls 854 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR----TFPD----ISTNISDLNLS 854 (1153)
T ss_pred eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc----cccc----cccccCEeECC
Confidence 999999999999999999999999999874 77888776 78999999999998543 3332 23689999999
Q ss_pred CCCCCCCCcccCCCCCCCEEECCC-CCCCcCC--CCCCCCCCEeeccccccccccC
Q 044535 859 DCNLLELPSALTCLSSLEILGLSG-NIFESLN--LKPFSCLTHLNVSYCKRLQSLQ 911 (1085)
Q Consensus 859 ~n~l~~lp~~l~~l~~L~~L~L~~-n~l~~l~--~~~l~~L~~L~l~~c~~L~~lp 911 (1085)
+|.+.++|.++..+++|+.|++++ |++..++ +..+++|+.|++++|..|..++
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 999999999999999999999998 6788877 6788999999999999987664
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-59 Score=569.71 Aligned_cols=305 Identities=30% Similarity=0.416 Sum_probs=266.5
Q ss_pred cccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH---HhccCcceEEEeehhhhhhhhcHHHHHHHHHHH
Q 044535 174 IGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR---IANQFEGCCFLENVREESAKRGVHRLQEELFSR 250 (1085)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 250 (1085)
||.+..++++.+.|..++. .+++|+||||+||||||+.++|+ +..+|+.++|+.. |+.+....++++++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----cccccHHhHHHHHHHH
Confidence 9999999999999976544 99999999999999999999983 6799999999954 6788999999999998
Q ss_pred HhcCCCCCC-CCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc--CCCeEEEe
Q 044535 251 LLEDGDLSL-GASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT--GVDEMYEV 327 (1085)
Q Consensus 251 ~~~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~--~~~~~~~l 327 (1085)
+...+.... ....+.+..+.+.|++||++|||||||+..+|+.+..+++....||+|++|||++.|+.. ++...+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 776432211 122466778899999999999999999999999999999988889999999999999987 67889999
Q ss_pred ecCCHHHHHHHHHHhhccCC-CCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCC-CHHHHHHHHHhhhcC-----C--C
Q 044535 328 EELNCREALQLFSLNAFKLN-HPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGR-SKRDWESALNKLRKN-----P--N 398 (1085)
Q Consensus 328 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~-----~--~ 398 (1085)
+.|+.+|||.||.+.||... ...+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... + .
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 3335589999999999999999999999999987 677999999988665 1 3
Q ss_pred chHHHHHHhhcCCCCHhHHHHHhhhhcccCCCC--HHHHHHHHhhCCCC------------cchhhHHHhhccceEEcC-
Q 044535 399 MEIQNVLRITYDTLDDEEKAIFLDIACFFKGDN--RDHVTTILDGCGFS------------TEIGISVLIDKCLITVTD- 463 (1085)
Q Consensus 399 ~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~------------~~~~i~~L~~~~Li~~~~- 463 (1085)
+.+..++++|||.||++.|.||+|||.||++++ ++.++.+|+|+||+ +..++..|++++|+....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 468899999999999999999999999999985 56799999999975 355799999999999874
Q ss_pred ----CceeechHHHHHhceeeeccc
Q 044535 464 ----DRLLMHDLLQEMGWGIVRQES 484 (1085)
Q Consensus 464 ----~~~~mHdli~~~~~~i~~~e~ 484 (1085)
..+.|||++|+||..++...+
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~ 499 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFG 499 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhcccc
Confidence 689999999999999988544
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=327.19 Aligned_cols=144 Identities=29% Similarity=0.523 Sum_probs=134.5
Q ss_pred CccccccCchhHHHHHHHHhCCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccC
Q 044535 1 FRGEDTRSNFTSHLYAALCRAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTT 79 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~ 79 (1085)
|||+|||++|++|||++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++||+|+|||+||++|++|++
T Consensus 33 FrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~I~e~~~-- 110 (187)
T PLN03194 33 HRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKK-- 110 (187)
T ss_pred CCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHHHHHcCC--
Confidence 89999999999999999999999999999 899999999999999999999999999999999999999999999865
Q ss_pred CCCcEEEEEEeeecCcccccc-ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHhhcccccccCCCCcHHHHHHHHHHHH
Q 044535 80 DMGQIVLPVFYHVNPSDVRKQ-TGSFGEALAKHEKYSSKTKPKVLKWRAALTQVANLSGWHLDKQLGSEAELVEKIVKDV 158 (1085)
Q Consensus 80 ~~~~~v~pvfy~v~p~~vr~~-~g~~~~~~~~~~~~~~~~~~~v~~w~~al~~~~~~~g~~~~~~~~~e~~~i~~i~~~i 158 (1085)
.|+||||+|+|+|||+| .|. ...+++++||+||++||+++||+++..+++|+++|++||+.|
T Consensus 111 ----~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~~iv~~v 173 (187)
T PLN03194 111 ----RVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVTMASDAV 173 (187)
T ss_pred ----EEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHHHHHHHH
Confidence 79999999999999997 443 245899999999999999999976766789999999999999
Q ss_pred hhccc
Q 044535 159 LKKLN 163 (1085)
Q Consensus 159 ~~~l~ 163 (1085)
.+++.
T Consensus 174 ~k~l~ 178 (187)
T PLN03194 174 IKNLI 178 (187)
T ss_pred HHHHH
Confidence 98764
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=6.3e-37 Score=340.03 Aligned_cols=268 Identities=31% Similarity=0.509 Sum_probs=210.9
Q ss_pred cchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH--HhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhc
Q 044535 176 IESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR--IANQFEGCCFLENVREESAKRGVHRLQEELFSRLLE 253 (1085)
Q Consensus 176 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~ 253 (1085)
||+++++|.+.|....++.++|+|+||||+||||||++++++ +..+|+.++|+... .......+..+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~----~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLS----KNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEE----S-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccc----cccccccccccccccccc
Confidence 788999999999876678999999999999999999999987 88999999998653 334447778888877776
Q ss_pred CCC-C-CCCCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc--CCCeEEEeec
Q 044535 254 DGD-L-SLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT--GVDEMYEVEE 329 (1085)
Q Consensus 254 ~~~-~-~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~--~~~~~~~l~~ 329 (1085)
... . ...+.......+.+.++++++||||||||+...|+.+...++.+..|++||||||+..++.. .....|++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 532 1 23445556788899999999999999999999999988887777789999999999998876 3378999999
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCC-CHHHHHHHHHhhhcCC------CchH
Q 044535 330 LNCREALQLFSLNAFKLN-HPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGR-SKRDWESALNKLRKNP------NMEI 401 (1085)
Q Consensus 330 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~-~~~~w~~~l~~l~~~~------~~~i 401 (1085)
|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|+..++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997655 3345567789999999999999999999999543 6688999888765432 4569
Q ss_pred HHHHHhhcCCCCHhHHHHHhhhhcccCCCC--HHHHHHHHhhCCCCcc
Q 044535 402 QNVLRITYDTLDDEEKAIFLDIACFFKGDN--RDHVTTILDGCGFSTE 447 (1085)
Q Consensus 402 ~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~--~~~l~~~~~~~g~~~~ 447 (1085)
..++..||+.|+++.|+||++||+||.++. .+.++.+|.++|++..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999999999999999999999875 7889999999987654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.5e-35 Score=378.37 Aligned_cols=436 Identities=22% Similarity=0.257 Sum_probs=343.7
Q ss_pred CCCCcccccccccceeccccCccccceeeccccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeeccccc
Q 044535 487 DPGKRSRLWDPQDVCNLFKKNSGSEAVESISLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLE 566 (1085)
Q Consensus 487 ~~~~~s~l~~~~~i~~~l~~~~~~~~~~~i~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~ 566 (1085)
++..+.+.|+..+.+............+...+|++.+......+..|..+++|+.|++++|.+. ..++..+.
T Consensus 43 ~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~--------~~ip~~~~ 114 (968)
T PLN00113 43 DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS--------GPIPDDIF 114 (968)
T ss_pred CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC--------CcCChHHh
Confidence 3444556675443222222222222224455666666544445678999999999999988652 24566666
Q ss_pred ccCCceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCch-hhhHhhhhccccceecccCCCCCCCCCC-CCCCCcccEEe
Q 044535 567 ILSNELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLE-HLWEEMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMV 644 (1085)
Q Consensus 567 ~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~ 644 (1085)
....+|++|++++|.+........+++|++|+|++|.+. .+|..++++++|++|++++|.+...+|. ++++++|++|+
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred ccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 556789999999998865333346889999999999987 7788899999999999999988777774 89999999999
Q ss_pred ccCcccccccCC---CCCCccEEecCCCccc-cccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCc
Q 044535 645 LDGCYSLIKFPK---TSWSITELDLGETAIE-EVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNIT 720 (1085)
Q Consensus 645 L~~~~~l~~~~~---~~~~L~~L~Ls~~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 720 (1085)
+++|.....+|. .+.+|++|++++|.+. .+|..++++++|++|++++|...+.+|..++++++|++|++++|....
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 999987766775 4568899999999987 688889999999999999998888899889999999999999988777
Q ss_pred cCCCCC---CCccccCccccccc-ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcC
Q 044535 721 KFPDIS---GDMKYLSLSETAIE-ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILES 796 (1085)
Q Consensus 721 ~~p~~~---~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~ 796 (1085)
.+|..+ .+|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 777654 46778899999886 67888899999999999999998888988999999999999999888888999999
Q ss_pred CCCccEEEccCCCCc-ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCCC
Q 044535 797 MERLETLYLAGTPIK-ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLSS 874 (1085)
Q Consensus 797 l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 874 (1085)
+++|+.|++++|.+. .+|.++..+++|+.|++++|. +....+..+..+++|+.|++++|+++ .+|..+..+++
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~-----l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 429 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS-----LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE-----ecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC
Confidence 999999999999887 678888888889999999887 44444446778888888888888887 57777888888
Q ss_pred CCEEECCCCCCCcCC---CCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCCCCCCcccC
Q 044535 875 LEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYLETVPA 935 (1085)
Q Consensus 875 L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~L~~~~~ 935 (1085)
|+.|++++|.+++.. +..+++|+.|++++|.....+|......+|+.|++++|.....+|.
T Consensus 430 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~ 493 (968)
T PLN00113 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493 (968)
T ss_pred CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccCh
Confidence 888888888887653 4567888888888887777777655555666777777765555544
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-32 Score=354.36 Aligned_cols=426 Identities=21% Similarity=0.227 Sum_probs=251.7
Q ss_pred ccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCC-CCCCCC-CCCCce
Q 044535 518 LDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLK-SLPSNF-NPENLV 595 (1085)
Q Consensus 518 ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~l~~L~ 595 (1085)
+|++.+......+..|.++++|++|++.+|.+. ..++..+..+ .+|++|++++|.+. .+|..+ .+++|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~--------~~~p~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 215 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV--------GKIPNSLTNL-TSLEFLTLASNQLVGQIPRELGQMKSLK 215 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCccc--------ccCChhhhhC-cCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence 344444333333445666667777776665431 1233333333 35666777666654 345544 566677
Q ss_pred EEecCCCCch-hhhHhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcccccccCCC---CCCccEEecCCCc
Q 044535 596 ELDMHHSNLE-HLWEEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYSLIKFPKT---SWSITELDLGETA 670 (1085)
Q Consensus 596 ~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~Ls~~~ 670 (1085)
+|+|++|++. .+|..+..+++|++|++++|.+...+| .++++++|++|++++|.....+|.. +.+|++|++++|.
T Consensus 216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence 7777666665 556666666677777776666655555 3666666777777666554444433 3456666676666
Q ss_pred cc-cccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCC---CCccccCccccccc-ccCcc
Q 044535 671 IE-EVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS---GDMKYLSLSETAIE-ELPSS 745 (1085)
Q Consensus 671 i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~---~~L~~L~L~~~~i~-~lp~~ 745 (1085)
+. .+|..+.++++|++|++++|...+.+|..+..+++|+.|++++|.....+|..+ .+|+.|++++|.+. .+|.+
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 65 455566666677777776666666666666666667777776666555555433 34555666666664 45666
Q ss_pred cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc-ccCccccCCCCCC
Q 044535 746 VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK-ELPSSIDHLPQLS 824 (1085)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~ 824 (1085)
+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.++ .+|..+..+++|+
T Consensus 376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 455 (968)
T PLN00113 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455 (968)
T ss_pred HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence 666666666666666666666666666666666666666666566666666666666666666665 3444455666666
Q ss_pred EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCCCCCEEECCCCCCCcC-C--CCCCCCCCEee
Q 044535 825 LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLSSLEILGLSGNIFESL-N--LKPFSCLTHLN 900 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~l-~--~~~l~~L~~L~ 900 (1085)
.|+|++|.. .+.+|. ....++|+.|++++|+++ .+|..+..+++|+.|+|++|++... | +..+++|+.|+
T Consensus 456 ~L~L~~n~~----~~~~p~--~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 456 MLSLARNKF----FGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred EEECcCcee----eeecCc--ccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 666666651 122222 123456666666666665 3555566666666666666666532 2 55566666666
Q ss_pred ccccccccccCC-CCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeEEEec
Q 044535 901 VSYCKRLQSLQE-FPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVSICFS 963 (1085)
Q Consensus 901 l~~c~~L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 963 (1085)
|++|.....+|. +....+|+.|++++|.....+|.... ...+++.+++.++.+...+|
T Consensus 530 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-----NVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred CCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh-----cCcccCEEeccCCcceeeCC
Confidence 666665555553 44455566666666666555554332 23445566666665554444
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-28 Score=268.63 Aligned_cols=309 Identities=25% Similarity=0.265 Sum_probs=152.6
Q ss_pred ceeEEEeeCCCCCCCCCCC-CCCCceEEecCCCCchhhh-HhhhhccccceecccCCCCCCCC-CCCCCCCcccEEeccC
Q 044535 571 ELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLW-EEMQHALNLRRIDLSYSLHLNET-PDLSSARNLEIMVLDG 647 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~-~~l~~l~~L~~L~L~~ 647 (1085)
+|+.+++..|.+..+|... ...+|+.|+|.+|.|.++. +.++.++.|+.||||.|.+.... |.+..-.++++|+|++
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS 182 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence 5666666666666666555 3344666666666665443 33555566666666665433322 2355555555555555
Q ss_pred cccc---cccCCCCCCccEEecCCCcccccccc-ccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCC
Q 044535 648 CYSL---IKFPKTSWSITELDLGETAIEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFP 723 (1085)
Q Consensus 648 ~~~l---~~~~~~~~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p 723 (1085)
|... .....++.+|..|.|+.|.++.+|.. |.+|++|+.|+|..|..-..--..|..|++|+.|.|..
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr-------- 254 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR-------- 254 (873)
T ss_pred ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhh--------
Confidence 5422 11122333555555555555555542 33455555555554332111112244455555555544
Q ss_pred CCCCCccccCcccccccccCcc-cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccE
Q 044535 724 DISGDMKYLSLSETAIEELPSS-VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLET 802 (1085)
Q Consensus 724 ~~~~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~ 802 (1085)
|.|..+.++ |..+.++++|+|..|.....-..++.+|++|+.|++++|.....-++....+++|+.
T Consensus 255 -------------N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~ 321 (873)
T KOG4194|consen 255 -------------NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE 321 (873)
T ss_pred -------------cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence 444444332 344555555555555444433344445555555555555444444444444555555
Q ss_pred EEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC----CCcccCCCCCCCE
Q 044535 803 LYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE----LPSALTCLSSLEI 877 (1085)
Q Consensus 803 L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~----lp~~l~~l~~L~~ 877 (1085)
|+|+.|.|+.+++ ++..+..|++|.|++|. +..+....|.++++|++|+|++|.+.- -...+..+++|+.
T Consensus 322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-----i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNS-----IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred EeccccccccCChhHHHHHHHhhhhcccccc-----hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 5555555555443 34445555555555555 444444445555555555555555441 1123444555555
Q ss_pred EECCCCCCCcCC---CCCCCCCCEeeccccc
Q 044535 878 LGLSGNIFESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 878 L~L~~n~l~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
|.+.+|++..++ +..|++|+.|+|.+|.
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCc
Confidence 555555555554 4455555555555443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=4.2e-29 Score=273.05 Aligned_cols=341 Identities=25% Similarity=0.316 Sum_probs=244.9
Q ss_pred eecccccccCCceeEEEeeCCCCCCCCCCC-CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCC--CCCCCCCC
Q 044535 560 HLCQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHL--NETPDLSS 636 (1085)
Q Consensus 560 ~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~--~~~~~l~~ 636 (1085)
.+|.+..... ++++|.+....+..+|... .+.+|+.|.+++|++.++...++.++.||.+++.+|... ..++++-.
T Consensus 23 ~FP~~v~qMt-~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~ 101 (1255)
T KOG0444|consen 23 RFPHDVEQMT-QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR 101 (1255)
T ss_pred cCchhHHHhh-heeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcc
Confidence 3444444433 6788888888888888766 788888888888888888888888888888888877542 33446888
Q ss_pred CCcccEEeccCcccccccCCCC---CCccEEecCCCccccccccc-cCCCcccEEEccCCCCCCccCCcccCCCCccEEE
Q 044535 637 ARNLEIMVLDGCYSLIKFPKTS---WSITELDLGETAIEEVPPAI-ESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELA 712 (1085)
Q Consensus 637 l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~Ls~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~ 712 (1085)
+..|..|+|++|. +...|..+ .++-.|+||+|+|..+|..+ -+|+.|-+|+|++| .+..+|+.+..+..|++|.
T Consensus 102 l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhh
Confidence 8888888888874 45666554 46778888888888888764 47888888888874 5677887788888888888
Q ss_pred ecccCCC----ccCCCCCCCccccCccccccc--ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCC
Q 044535 713 LHGCSNI----TKFPDISGDMKYLSLSETAIE--ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSK 786 (1085)
Q Consensus 713 L~~~~~~----~~~p~~~~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~ 786 (1085)
|++|+.. ..+| .+.+|+.|.+++++-+ .+|.++..+.+|..++++.|. +..+|+.+.++++|+.|+||+|..
T Consensus 180 Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred cCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCce
Confidence 8887632 2233 3455666677766543 677777777777777777654 456677777777777777777644
Q ss_pred CCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC
Q 044535 787 LEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP 866 (1085)
Q Consensus 787 l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp 866 (1085)
. .+....+...+|++|+++.|.++.+|+.+..++.|+.|.+.+|+-- +.++|. .++.+.+|+.+..++|.+.-.|
T Consensus 258 t-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~---FeGiPS-GIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 258 T-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT---FEGIPS-GIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred e-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc---ccCCcc-chhhhhhhHHHHhhccccccCc
Confidence 3 3333445566777777777777777777777777777777777621 345554 4677777777777777777777
Q ss_pred cccCCCCCCCEEECCCCCCCcCC--CCCCCCCCEeecccccccccc
Q 044535 867 SALTCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVSYCKRLQSL 910 (1085)
Q Consensus 867 ~~l~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L~~l 910 (1085)
+.+..|..|+.|.|++|.+.++| +.-++.|+.|++.++++|.--
T Consensus 333 EglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCC
Confidence 77777777777777777777777 777777777777777776543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=5.6e-28 Score=264.28 Aligned_cols=357 Identities=25% Similarity=0.343 Sum_probs=300.4
Q ss_pred eeEEEeeCCCCC--CCCCCC-CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCc
Q 044535 572 LRYLHWHRYPLK--SLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGC 648 (1085)
Q Consensus 572 Lr~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~ 648 (1085)
.|-.++++|.++ .+|... .++.++.|.|..+++..+|+.++.+.+|++|.+++|......-.++.++.|+.+.+..|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 455667777654 688888 89999999999999999999999999999999999988888888999999999999988
Q ss_pred ccc-cccCCCCC---CccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcc-cCCCCccEEEecccCCCccCC
Q 044535 649 YSL-IKFPKTSW---SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSI-CNLTSLTELALHGCSNITKFP 723 (1085)
Q Consensus 649 ~~l-~~~~~~~~---~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~~p 723 (1085)
+.- ..+|..+. .|+.||||.|.+.++|..+.+-+++-+|+|++| .+..+|..+ .+++.|-.|+|++| .+..+|
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~LP 166 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEMLP 166 (1255)
T ss_pred ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhcC
Confidence 643 45676654 678899999999999999999999999999985 567788654 58999999999985 566666
Q ss_pred CCC---CCccccCcccccccccC-cccccCCCCCEEEccCCcc-cccccccccCCCCCcEEEeeCCCCCCCcchhhcCCC
Q 044535 724 DIS---GDMKYLSLSETAIEELP-SSVECLTELTVLRLQKCKR-LKRVSSSICKLKSLEILYLFGCSKLEGLPEILESME 798 (1085)
Q Consensus 724 ~~~---~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~-~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 798 (1085)
..+ ..|+.|.|++|.+..+. ..+-.+++|+.|.+++.+. +..+|.++..|.+|..+++|.| .+..+|+.+.+++
T Consensus 167 PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 167 PQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLR 245 (1255)
T ss_pred HHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhh
Confidence 543 47788899998775221 1123467788888887653 4678999999999999999875 5778899999999
Q ss_pred CccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC--CCCcccCCCCCCC
Q 044535 799 RLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL--ELPSALTCLSSLE 876 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 876 (1085)
+|+.|+|++|.|+++....+...+|++|+|+.|+ ++.+|. .+..++.|+.|.+.+|+++ .||+.++.+..|+
T Consensus 246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-----Lt~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-----LTVLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhheeccCcCceeeeeccHHHHhhhhhhccccch-----hccchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 9999999999999998888888999999999999 888887 5789999999999999988 6999999999999
Q ss_pred EEECCCCCCCcCC--CCCCCCCCEeeccccccccccCC-CCCCCCCCeEEEeCCCCCCcccCCCc
Q 044535 877 ILGLSGNIFESLN--LKPFSCLTHLNVSYCKRLQSLQE-FPSPLRLVNLQAHECIYLETVPASAD 938 (1085)
Q Consensus 877 ~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~~~~ 938 (1085)
.+..++|.+.-+| +..+..|+.|.|+ |+.|..+|+ +.-+..|..|++.+++.|-.-|....
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 9999999999888 8888999999998 567778886 44556678999999999987666554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.5e-26 Score=252.38 Aligned_cols=351 Identities=20% Similarity=0.214 Sum_probs=234.7
Q ss_pred eccccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCC--CCC
Q 044535 515 SISLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNF--NPE 592 (1085)
Q Consensus 515 ~i~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~l~ 592 (1085)
.-.+|++++...++....|.++++|+.+++..|.. ..+|. +.....+|+.|++.+|.|.++.+.- .+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---------t~IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~ 149 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---------TRIPR-FGHESGHLEKLDLRHNLISSVTSEELSALP 149 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchh---------hhccc-ccccccceeEEeeeccccccccHHHHHhHh
Confidence 34689999999999999999999999999988765 33343 3444558999999999999887754 678
Q ss_pred CceEEecCCCCchhhhHh-hhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcccccccCC----CCCCccEEec
Q 044535 593 NLVELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYSLIKFPK----TSWSITELDL 666 (1085)
Q Consensus 593 ~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~L 666 (1085)
.|+.|||+.|.|..++.. +..-.++++|+|++|.+...-. .|.++.+|-+|.|+.|.. ..+|. .+..|+.|+|
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri-ttLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI-TTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc-cccCHHHhhhcchhhhhhc
Confidence 999999999999988754 5556899999999998877655 489999999999998864 34443 3567999999
Q ss_pred CCCccccc-cccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC---CCCccccCccccccccc
Q 044535 667 GETAIEEV-PPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI---SGDMKYLSLSETAIEEL 742 (1085)
Q Consensus 667 s~~~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~---~~~L~~L~L~~~~i~~l 742 (1085)
..|.|..+ -..|..|++|+.|.|..|....--...|..+.++++|+|..|+....-..+ +..|+.|+++.|.|..+
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 99999876 445889999999999987655444455667999999999886543322222 23444555666665544
Q ss_pred -CcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc----cCccc
Q 044535 743 -PSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE----LPSSI 817 (1085)
Q Consensus 743 -p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~----lp~~l 817 (1085)
+++....++|+.|+|++|.+...-+.++..|..|++|+|+.|+....-...|..+++|++|+|++|.+.. -...+
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 2334445555666665555554444555555555555555554433223344455555555555555441 11234
Q ss_pred cCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCCEEECCC
Q 044535 818 DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLEILGLSG 882 (1085)
Q Consensus 818 ~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~ 882 (1085)
..++.|+.|.+.+|+ +..+|...|+++++|++|+|.+|.+..+ |..|..+ .|++|-+..
T Consensus 389 ~gl~~LrkL~l~gNq-----lk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQ-----LKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccchhhhheeecCce-----eeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 445555555555555 5555555555555555555555555543 3344444 455554433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=1.1e-27 Score=250.83 Aligned_cols=353 Identities=23% Similarity=0.280 Sum_probs=180.0
Q ss_pred ceeEEEeeCCCCCCCCCCC-CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcc
Q 044535 571 ELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCY 649 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~ 649 (1085)
.|..|+.+++.+..+|+.+ .+..++.|+.++|++..+|+.+..+.+|+.|++++|......++++.+..|+.|+..+|.
T Consensus 69 ~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred ceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc
Confidence 4555566666665555555 555666666666666666666666666666666666555555555555555555554443
Q ss_pred cccccCCCCC---CccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCC
Q 044535 650 SLIKFPKTSW---SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS 726 (1085)
Q Consensus 650 ~l~~~~~~~~---~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 726 (1085)
+...|..+. ++..|++.+|.+..+|+..-+++.|++|+... +.++.+|..++.+.+|+.|++..| .+..+|++.
T Consensus 149 -i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~ 225 (565)
T KOG0472|consen 149 -ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFP 225 (565)
T ss_pred -cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCC
Confidence 223333322 33444444555554444433444455544443 234444444444555554444443 233333222
Q ss_pred --------------------------CCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEE
Q 044535 727 --------------------------GDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILY 780 (1085)
Q Consensus 727 --------------------------~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~ 780 (1085)
.++..|++..|+++++|..+.-+.+|..|++++|.+ ..+|.+++++ .|+.|.
T Consensus 226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLA 303 (565)
T ss_pred ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehh
Confidence 234445556666666666655556666666655543 3445555555 556665
Q ss_pred eeCCCCCCC-------------------------------------cch----hhcCCCCccEEEccCCCCcccCccccC
Q 044535 781 LFGCSKLEG-------------------------------------LPE----ILESMERLETLYLAGTPIKELPSSIDH 819 (1085)
Q Consensus 781 L~~~~~l~~-------------------------------------lp~----~l~~l~~L~~L~L~~~~i~~lp~~l~~ 819 (1085)
+.||+.-.. .|. ....+.+.+.|++++-.++.+|.....
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 555541000 000 001122233333333333333321111
Q ss_pred CC---CCCEEEccCCCchhh------------------hccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEE
Q 044535 820 LP---QLSLLSLENCKNILV------------------FLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEIL 878 (1085)
Q Consensus 820 l~---~L~~L~L~~~~~l~~------------------~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 878 (1085)
-. -....+++.|+-..- -.-++++..++.+++|..|+|++|.+.++|..++.+..|++|
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~L 463 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTL 463 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhhee
Confidence 00 122333333330000 012233445667778888888888888888888888888888
Q ss_pred ECCCCCCCcCC--------------------------CCCCCCCCEeeccccccccccC-CCCCCCCCCeEEEeCCCC
Q 044535 879 GLSGNIFESLN--------------------------LKPFSCLTHLNVSYCKRLQSLQ-EFPSPLRLVNLQAHECIY 929 (1085)
Q Consensus 879 ~L~~n~l~~l~--------------------------~~~l~~L~~L~l~~c~~L~~lp-~l~~~~~L~~L~i~~c~~ 929 (1085)
+++.|.|..+| +..+.+|..|++.++. ++.+| .++.+.+|+.|++++++.
T Consensus 464 nlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 464 NLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred cccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 88877776554 2344566666666533 44444 466666666666666653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-26 Score=265.99 Aligned_cols=391 Identities=24% Similarity=0.280 Sum_probs=275.3
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCC-CCCCce
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLV 595 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~ 595 (1085)
.++++.+..+..+-+...+.-.|+.|++++|.. ..+|..+..++ +|+.|+++.|.+.+.|... ++.+|+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~---------~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI---------SSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQ 94 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeecccccc---------ccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcch
Confidence 344444443333334444444589999988865 44555544443 7899999999999999776 889999
Q ss_pred EEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccc-------------------cccCC
Q 044535 596 ELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSL-------------------IKFPK 656 (1085)
Q Consensus 596 ~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l-------------------~~~~~ 656 (1085)
+|.|.+|.+..+|.++..+.+|++|++++|.+...++-+..+..++.+..++|..+ ..++.
T Consensus 95 ~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 95 YLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 99999999999999999999999999999987776666666666666666666322 22233
Q ss_pred CCCCccE-EecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC-CCCccccCc
Q 044535 657 TSWSITE-LDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI-SGDMKYLSL 734 (1085)
Q Consensus 657 ~~~~L~~-L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-~~~L~~L~L 734 (1085)
....+++ |+|++|.+. ...+.++.+|+.|....+.. ..+ ....++|+.|+...|...+..+.. ..+|+++++
T Consensus 175 ~i~~l~~~ldLr~N~~~--~~dls~~~~l~~l~c~rn~l-s~l---~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~di 248 (1081)
T KOG0618|consen 175 DIYNLTHQLDLRYNEME--VLDLSNLANLEVLHCERNQL-SEL---EISGPSLTALYADHNPLTTLDVHPVPLNLQYLDI 248 (1081)
T ss_pred chhhhheeeecccchhh--hhhhhhccchhhhhhhhccc-ceE---EecCcchheeeeccCcceeeccccccccceeeec
Confidence 3334444 666666655 22344555555555544321 111 122567778888877776555543 357888899
Q ss_pred ccccccccCcccccCCCCCEEEccCCcc----------------------cccccccccCCCCCcEEEeeCCCCCCCcch
Q 044535 735 SETAIEELPSSVECLTELTVLRLQKCKR----------------------LKRVSSSICKLKSLEILYLFGCSKLEGLPE 792 (1085)
Q Consensus 735 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~----------------------~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~ 792 (1085)
+.+.+..+|.+++.+.+|+.|+..+|.+ +..+|.....+++|++|+|..|.. ..+|+
T Consensus 249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L-~~lp~ 327 (1081)
T KOG0618|consen 249 SHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL-PSLPD 327 (1081)
T ss_pred chhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc-cccch
Confidence 9999999998899999999998887765 233455556677777777776543 22332
Q ss_pred hh--------------------------cCCCCccEEEccCCCCc-ccCccccCCCCCCEEEccCCCchhhhccCCchhh
Q 044535 793 IL--------------------------ESMERLETLYLAGTPIK-ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLAL 845 (1085)
Q Consensus 793 ~l--------------------------~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~ 845 (1085)
.+ ..++.|+.|++.+|.++ ..-+.+.++++|+.|+|++|. +..+|...
T Consensus 328 ~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-----L~~fpas~ 402 (1081)
T KOG0618|consen 328 NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-----LNSFPASK 402 (1081)
T ss_pred HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc-----cccCCHHH
Confidence 11 01233555566666655 233346678899999999998 88999999
Q ss_pred hcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccccccccc--cCCCCCCCCCCeE
Q 044535 846 LSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSYCKRLQS--LQEFPSPLRLVNL 922 (1085)
Q Consensus 846 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~c~~L~~--lp~l~~~~~L~~L 922 (1085)
+.+++.|++|+||+|+++.+|..+..++.|++|...+|++...| +..++.|+.++|+ |+.|+. +|..-+..+|++|
T Consensus 403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyL 481 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYL 481 (1081)
T ss_pred HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCCccccee
Confidence 99999999999999999999999999999999999999999999 8899999999999 455543 4443334678899
Q ss_pred EEeCCCCC
Q 044535 923 QAHECIYL 930 (1085)
Q Consensus 923 ~i~~c~~L 930 (1085)
+++++..+
T Consensus 482 dlSGN~~l 489 (1081)
T KOG0618|consen 482 DLSGNTRL 489 (1081)
T ss_pred eccCCccc
Confidence 99998753
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=5.6e-27 Score=245.47 Aligned_cols=367 Identities=25% Similarity=0.281 Sum_probs=205.9
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCC-CCCCce
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLV 595 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~ 595 (1085)
.++.+.++...+.+ .+..+..|..|+..+|.+ ..+|.++.... +|..|++.++.++.+|... +++.|+
T Consensus 118 ~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i---------~slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 118 KLDCSSNELKELPD-SIGRLLDLEDLDATNNQI---------SSLPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLK 186 (565)
T ss_pred hhhccccceeecCc-hHHHHhhhhhhhcccccc---------ccCchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHH
Confidence 44444444444333 233444555555555443 34444444433 4555555666666655544 566666
Q ss_pred EEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccC----CCCCCccEEecCCCcc
Q 044535 596 ELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFP----KTSWSITELDLGETAI 671 (1085)
Q Consensus 596 ~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~----~~~~~L~~L~Ls~~~i 671 (1085)
.||...|-++.+|..++.+.+|..|+|..|++. ..|.|.++..|.+|.+..|. +..+| +.+.++..||+..|.+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccccc
Confidence 666666666666666666666666666665433 33466666666666655443 22333 2455788889999999
Q ss_pred ccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCcc------------------------------
Q 044535 672 EEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITK------------------------------ 721 (1085)
Q Consensus 672 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~------------------------------ 721 (1085)
+++|..+.-+.+|.+||+++| .+..+|.+++++ +|+.|-+.||+.-+.
T Consensus 265 ke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred ccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 999998888889999999874 567788888888 888888887652110
Q ss_pred -------CCC-C------CCCccccCcccccccccCcccccCCC---CCEEEccCCcccccccccccCCCCCcEEEeeCC
Q 044535 722 -------FPD-I------SGDMKYLSLSETAIEELPSSVECLTE---LTVLRLQKCKRLKRVSSSICKLKSLEILYLFGC 784 (1085)
Q Consensus 722 -------~p~-~------~~~L~~L~L~~~~i~~lp~~l~~l~~---L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~ 784 (1085)
.|. . +-+.+.|++++-+++.+|+....-.. ....+++.|+. ..+|..+..++.+.+.-+..+
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsn 421 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSN 421 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhc
Confidence 000 0 01234455555555555554322222 44555555543 234444444444444444444
Q ss_pred CCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC
Q 044535 785 SKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE 864 (1085)
Q Consensus 785 ~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~ 864 (1085)
+....+|..++.+++|..|++++|.+..+|..++.+..|+.|+|+.|. +..+|. .+..+..|+.+-.++|++..
T Consensus 422 n~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-----Fr~lP~-~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 422 NKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNR-----FRMLPE-CLYELQTLETLLASNNQIGS 495 (565)
T ss_pred CccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccc-----cccchH-HHhhHHHHHHHHhccccccc
Confidence 455555555566666666666666666666666666666666666665 344443 23333344444455555555
Q ss_pred CCcc-cCCCCCCCEEECCCCCCCcCC--CCCCCCCCEeeccccc
Q 044535 865 LPSA-LTCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 865 lp~~-l~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~ 905 (1085)
++.. +.++.+|.+|||.+|.+..+| ++++.+|++|.+++++
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 4433 555555555555555555555 5555555555555554
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.7e-22 Score=261.99 Aligned_cols=334 Identities=27% Similarity=0.388 Sum_probs=257.5
Q ss_pred cccCCceeEEEeeCCCC-------CCCCCCC--CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCC
Q 044535 566 EILSNELRYLHWHRYPL-------KSLPSNF--NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSS 636 (1085)
Q Consensus 566 ~~l~~~Lr~L~l~~~~l-------~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~ 636 (1085)
+.-..+|++|.+..+.. ..+|..+ -+.+|+.|++.++.+..+|..+ ...+|+.|++++|.+......+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 33445788888765432 1355554 2456888888888888887766 467888888888765544445667
Q ss_pred CCcccEEeccCcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEeccc
Q 044535 637 ARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGC 716 (1085)
Q Consensus 637 l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 716 (1085)
+++|+.|+|++|..+ ..+| .++.+++|++|++++|..+..+|..++++++|+.|++++|
T Consensus 633 l~~Lk~L~Ls~~~~l--------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 633 LTGLRNIDLRGSKNL--------------------KEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CCCCCEEECCCCCCc--------------------CcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 777777777776554 5555 3778999999999999999999999999999999999999
Q ss_pred CCCccCCCC--CCCccccCccccc-ccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCC-----
Q 044535 717 SNITKFPDI--SGDMKYLSLSETA-IEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLE----- 788 (1085)
Q Consensus 717 ~~~~~~p~~--~~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~----- 788 (1085)
..++.+|.. +.+|+.|+++++. +..+|. ..++|+.|++++|.+ ..+|..+ .+++|+.|.+.++....
T Consensus 692 ~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i-~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~ 766 (1153)
T PLN03210 692 ENLEILPTGINLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAI-EEFPSNL-RLENLDELILCEMKSEKLWERV 766 (1153)
T ss_pred CCcCccCCcCCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcc-ccccccc-cccccccccccccchhhccccc
Confidence 999999875 4578888998874 345554 246899999999874 5677655 68899999988754321
Q ss_pred -C-cchhhcCCCCccEEEccCCC-CcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-C
Q 044535 789 -G-LPEILESMERLETLYLAGTP-IKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-E 864 (1085)
Q Consensus 789 -~-lp~~l~~l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~ 864 (1085)
. .+.....+++|+.|+|++|. +.++|.+++++++|+.|+|++|.+ +..+|.. .++++|+.|+|++|... .
T Consensus 767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~----L~~LP~~--~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN----LETLPTG--INLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC----cCeeCCC--CCccccCEEECCCCCcccc
Confidence 1 12223345789999999986 558999999999999999999985 4456653 27899999999998654 4
Q ss_pred CCcccCCCCCCCEEECCCCCCCcCC--CCCCCCCCEeeccccccccccCC-CCCCCCCCeEEEeCCCCCCcccC
Q 044535 865 LPSALTCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVSYCKRLQSLQE-FPSPLRLVNLQAHECIYLETVPA 935 (1085)
Q Consensus 865 lp~~l~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~ 935 (1085)
+|.. .++|+.|+|++|.++.+| +..+++|+.|++++|++++.+|. .....+|+.|++.+|.+|..++-
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred cccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC
Confidence 5543 468999999999999998 88999999999999999999985 55667888999999999986643
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=5.1e-23 Score=237.30 Aligned_cols=394 Identities=19% Similarity=0.187 Sum_probs=247.8
Q ss_pred ccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCC-CCCCceEEecCCCCchhhhHhhhhcccc
Q 044535 539 LRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNL 617 (1085)
Q Consensus 539 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L 617 (1085)
+..|++..|... ..|-.+....-+|+.|++++|.+..+|..+ .+.+|+.|+++.|.|..+|....++.+|
T Consensus 23 ~~~ln~~~N~~l---------~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 23 LQILNLRRNSLL---------SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNL 93 (1081)
T ss_pred HHhhhccccccc---------cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcc
Confidence 667777666542 222111111235999999999999999888 7899999999999999999999999999
Q ss_pred ceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCC---CCccEEecCCC-ccccccccccCCCcccEEEccCCC
Q 044535 618 RRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTS---WSITELDLGET-AIEEVPPAIESLGKLVVLRLDNCR 693 (1085)
Q Consensus 618 ~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~Ls~~-~i~~lp~~i~~l~~L~~L~L~~~~ 693 (1085)
++|+|.+|.....+..+..+.+|++|++++|... .+|..+ ..+..+..++| .+..++ ... ++.+++..+.
T Consensus 94 ~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~~n~ 167 (1081)
T KOG0618|consen 94 QYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLRLNV 167 (1081)
T ss_pred hhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhhhhh
Confidence 9999998865555557999999999999988643 444332 23344444544 111111 111 3334444333
Q ss_pred CCCccCCcccC-------------------CCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCE
Q 044535 694 RLKNLPSSICN-------------------LTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTV 754 (1085)
Q Consensus 694 ~~~~lp~~l~~-------------------l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 754 (1085)
....++..+.. +.+|+.|....| .+..+-..-.+++.|+.+.|.+..+-. -....+|+.
T Consensus 168 l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn-~ls~l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~ 245 (1081)
T KOG0618|consen 168 LGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERN-QLSELEISGPSLTALYADHNPLTTLDV-HPVPLNLQY 245 (1081)
T ss_pred cccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhc-ccceEEecCcchheeeeccCcceeecc-cccccccee
Confidence 33333333333 333444333322 122222223345555555555542211 122358889
Q ss_pred EEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCch
Q 044535 755 LRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNI 834 (1085)
Q Consensus 755 L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l 834 (1085)
++++.+++ ..+|+.++.+.+|+.|.+..|.. ..+|..+..+.+|+.|.+..|.+..+|.....++.|++|+|..|.-.
T Consensus 246 ~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 246 LDISHNNL-SNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred eecchhhh-hcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 99998775 45668888999999999887655 55666666666666666666666666666666666777766666510
Q ss_pred hh--------------------------------------------hccCCchhhhcCCCCccEEecCCCCCCCCCc-cc
Q 044535 835 LV--------------------------------------------FLTNLPLALLSGLCSLTELHLNDCNLLELPS-AL 869 (1085)
Q Consensus 835 ~~--------------------------------------------~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l 869 (1085)
.- .+++-....+.++.+|+.|+|++|++..+|. .+
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 00 0121112235566777777777777777775 36
Q ss_pred CCCCCCCEEECCCCCCCcCC--CCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCCCCCCcccCCCccccccccCC
Q 044535 870 TCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYLETVPASADVEFTVSWSS 947 (1085)
Q Consensus 870 ~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~ 947 (1085)
.+++.|+.|+||+|.++.+| +..+..|++|...+ +.+.++|++..+.+|+.++++ |..|..+-- +....|..
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l----~~~~p~p~ 477 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEVTL----PEALPSPN 477 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhhhh----hhhCCCcc
Confidence 67777777777777777777 66777777776654 346678888888888899986 555654322 23334567
Q ss_pred CccceeecCe
Q 044535 948 QQYFTFFNSS 957 (1085)
Q Consensus 948 ~~~l~~~~~~ 957 (1085)
+++|+++++.
T Consensus 478 LkyLdlSGN~ 487 (1081)
T KOG0618|consen 478 LKYLDLSGNT 487 (1081)
T ss_pred cceeeccCCc
Confidence 7888877644
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.80 E-value=3e-19 Score=214.41 Aligned_cols=261 Identities=22% Similarity=0.288 Sum_probs=168.0
Q ss_pred CceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcc
Q 044535 570 NELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCY 649 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~ 649 (1085)
+.-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. .++|++|++++|.+.. +|.+ .++|+.|++.+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l--p~sL~~L~Ls~-- 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL--PPGLLELSIFS-- 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc--ccccceeeccC--
Confidence 456678888888888887653 4788888888888877642 4667777777664442 2321 23455555554
Q ss_pred cccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCc
Q 044535 650 SLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDM 729 (1085)
Q Consensus 650 ~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L 729 (1085)
|.+..+|... .+|+.|++++|. +..+|.. +++|+.|++++| .+..+|....+|
T Consensus 272 -------------------N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~lp~~L 324 (788)
T PRK15387 272 -------------------NPLTHLPALP---SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPSEL 324 (788)
T ss_pred -------------------Cchhhhhhch---hhcCEEECcCCc-ccccccc---ccccceeECCCC-ccccCCCCcccc
Confidence 4444444321 344455555542 3334431 345555555554 333445445556
Q ss_pred cccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCC
Q 044535 730 KYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTP 809 (1085)
Q Consensus 730 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 809 (1085)
+.|++++|.+..+|.. ..+|+.|+|++|++. .+|.. .++|+.|++++|.. ..+|.. +.+|+.|++++|.
T Consensus 325 ~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~ 393 (788)
T PRK15387 325 CKLWAYNNQLTSLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNR 393 (788)
T ss_pred cccccccCcccccccc---ccccceEecCCCccC-CCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCc
Confidence 6666666666666642 246777777776654 34432 24566777776543 345543 3568888888888
Q ss_pred CcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC
Q 044535 810 IKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 810 i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
++.+|.. .++|+.|++++|. +..+|. .+.+|+.|++++|+++.+|..+..+++|+.|+|++|.|+...
T Consensus 394 Lt~LP~l---~s~L~~LdLS~N~-----LssIP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 394 LTSLPVL---PSELKELMVSGNR-----LTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred ccCCCCc---ccCCCEEEccCCc-----CCCCCc----chhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchH
Confidence 8888753 3678889999888 666664 134688899999999999988889999999999999988654
No 17
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.77 E-value=9.2e-20 Score=177.88 Aligned_cols=130 Identities=32% Similarity=0.522 Sum_probs=113.7
Q ss_pred CccccccCchhHHHHHHHHhC--CCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcc
Q 044535 1 FRGEDTRSNFTSHLYAALCRA--KIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKD 77 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~--gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~ 77 (1085)
|+|.|++..|++||..+|++. |+++|+++ ++.+|..+.+++.+||++|+++|+|||++|++|.||+.|+..++++..
T Consensus 5 y~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~ 84 (141)
T PF01582_consen 5 YSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLL 84 (141)
T ss_dssp E-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHH
T ss_pred eCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhcc
Confidence 566678899999999999999 99999999 899999999999999999999999999999999999999999999998
Q ss_pred cCCCCcEEEEEEeeecCcccc-ccccchhHHHHHHHHhcCCC--hhHHHHHHHHHH
Q 044535 78 TTDMGQIVLPVFYHVNPSDVR-KQTGSFGEALAKHEKYSSKT--KPKVLKWRAALT 130 (1085)
Q Consensus 78 ~~~~~~~v~pvfy~v~p~~vr-~~~g~~~~~~~~~~~~~~~~--~~~v~~w~~al~ 130 (1085)
.....++|+||||+|.+++++ .+.+.|...+..+....... ......|++++.
T Consensus 85 ~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 85 EEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp CSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred ccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 323358999999999999999 79999999988877665443 567889998875
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=2.8e-18 Score=206.07 Aligned_cols=258 Identities=22% Similarity=0.264 Sum_probs=158.6
Q ss_pred ccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccc
Q 044535 537 HQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALN 616 (1085)
Q Consensus 537 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~ 616 (1085)
.+-..|+++++.+ ..+|..+ +.+|+.|.+.+|.++.+|.. +++|++|+|++|+++.+|.. .++
T Consensus 201 ~~~~~LdLs~~~L---------tsLP~~l---~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~s 263 (788)
T PRK15387 201 NGNAVLNVGESGL---------TTLPDCL---PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPG 263 (788)
T ss_pred CCCcEEEcCCCCC---------CcCCcch---hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccc
Confidence 3456778877655 3445443 35899999999999999974 68999999999999999853 468
Q ss_pred cceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCC
Q 044535 617 LRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLK 696 (1085)
Q Consensus 617 L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~ 696 (1085)
|+.|++++|.+. .+|. ...+|+.|++++|. +..+|..+.+|+.|++++|.+..+|... .+|+.|++++|. +.
T Consensus 264 L~~L~Ls~N~L~-~Lp~--lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~-L~ 335 (788)
T PRK15387 264 LLELSIFSNPLT-HLPA--LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQ-LT 335 (788)
T ss_pred cceeeccCCchh-hhhh--chhhcCEEECcCCc-cccccccccccceeECCCCccccCCCCc---ccccccccccCc-cc
Confidence 999999998654 3333 23567788888774 4566666667777777777777776532 345666676653 34
Q ss_pred ccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCC
Q 044535 697 NLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSL 776 (1085)
Q Consensus 697 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L 776 (1085)
.+|.. ..+|++|+|++| .+..+|....+|+.|++++|.+..+|.. .++|+.|++++|.+.
T Consensus 336 ~LP~l---p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt------------- 395 (788)
T PRK15387 336 SLPTL---PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT------------- 395 (788)
T ss_pred ccccc---ccccceEecCCC-ccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCccc-------------
Confidence 45541 245667777664 3344555555555566665555555532 234455555544432
Q ss_pred cEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEe
Q 044535 777 EILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELH 856 (1085)
Q Consensus 777 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~ 856 (1085)
.+|.. +++|+.|++++|.++.+|.. +.+|+.|++++|. ++.+|. .+..+++|+.|+
T Consensus 396 ------------~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-----Lt~LP~-sl~~L~~L~~Ld 451 (788)
T PRK15387 396 ------------SLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-----LTRLPE-SLIHLSSETTVN 451 (788)
T ss_pred ------------CCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-----ccccCh-HHhhccCCCeEE
Confidence 23321 23455555555555555532 2345555555555 445544 244555566666
Q ss_pred cCCCCCC
Q 044535 857 LNDCNLL 863 (1085)
Q Consensus 857 Ls~n~l~ 863 (1085)
|++|+++
T Consensus 452 Ls~N~Ls 458 (788)
T PRK15387 452 LEGNPLS 458 (788)
T ss_pred CCCCCCC
Confidence 6666555
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=1.5e-16 Score=192.91 Aligned_cols=246 Identities=20% Similarity=0.288 Sum_probs=149.7
Q ss_pred CceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCC-CCCCCcccEEeccCc
Q 044535 570 NELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLDGC 648 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~ 648 (1085)
++...|+++++.+.++|..+ +++|+.|+|++|+++.+|..+. .+|++|++++|.+. .+|. + ..+|+.|+|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L--- 248 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMEL--- 248 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEEC---
Confidence 35567777777777777654 3577888888888887776553 47777777776543 2332 1 123444444
Q ss_pred ccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC-CC
Q 044535 649 YSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI-SG 727 (1085)
Q Consensus 649 ~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-~~ 727 (1085)
++|.+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++|. +..+|.. ..
T Consensus 249 ------------------s~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~ 304 (754)
T PRK15370 249 ------------------SINRITELPERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNS-IRTLPAHLPS 304 (754)
T ss_pred ------------------cCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCc-cccCcccchh
Confidence 4444455554432 35555555543 3334554332 356666666553 3334432 23
Q ss_pred CccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccC
Q 044535 728 DMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAG 807 (1085)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 807 (1085)
+|+.|++++|.+..+|..+ .++|+.|++++|.+. .+|..+. ++|+.|++++|.. ..+|..+ .++|+.|+|++
T Consensus 305 sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 305 GITHLNVQSNSLTALPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSR 376 (754)
T ss_pred hHHHHHhcCCccccCCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCC-CcCChhh--cCCcCEEECCC
Confidence 5666677777777666543 257777777777644 3555442 5778888877654 3456544 35788888888
Q ss_pred CCCcccCccccCCCCCCEEEccCCCchhhhccCCchh---hhcCCCCccEEecCCCCCC
Q 044535 808 TPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLA---LLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 808 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~---~~~~l~~L~~L~Ls~n~l~ 863 (1085)
|.++.+|..+. .+|+.|++++|. +..+|.. ....++++..|+|.+|.+.
T Consensus 377 N~Lt~LP~~l~--~sL~~LdLs~N~-----L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 377 NALTNLPENLP--AALQIMQASRNN-----LVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CcCCCCCHhHH--HHHHHHhhccCC-----cccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 88887776553 367778888877 5555542 2345577888888888776
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=5.7e-16 Score=187.90 Aligned_cols=247 Identities=21% Similarity=0.300 Sum_probs=183.5
Q ss_pred CCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCCcc
Q 044535 592 ENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAI 671 (1085)
Q Consensus 592 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i 671 (1085)
.+...|++++++++.+|..+. ++|+.|+|++|.+...++.+ ..+|+.|++++|.+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l-----------------------~~nL~~L~Ls~N~L 232 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENL-----------------------QGNIKTLYANSNQL 232 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhh-----------------------ccCCCEEECCCCcc
Confidence 345667777766666665432 35666666666443222111 12566666666777
Q ss_pred ccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC-CCCccccCcccccccccCcccccCC
Q 044535 672 EEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI-SGDMKYLSLSETAIEELPSSVECLT 750 (1085)
Q Consensus 672 ~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-~~~L~~L~L~~~~i~~lp~~l~~l~ 750 (1085)
..+|..+. .+|+.|+|++|. +..+|..+. ++|+.|++++|. +..+|.. ..+|+.|++++|.++.+|..+. +
T Consensus 233 tsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~ 304 (754)
T PRK15370 233 TSIPATLP--DTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLPEELRYLSVYDNSIRTLPAHLP--S 304 (754)
T ss_pred ccCChhhh--ccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccCCCCcEEECCCCccccCcccch--h
Confidence 77876553 479999999976 457887653 589999999764 5567764 4589999999999999987553 5
Q ss_pred CCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccC
Q 044535 751 ELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLEN 830 (1085)
Q Consensus 751 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~ 830 (1085)
+|+.|++++|.+. .+|..+ .++|+.|++++|... .+|..+ +++|+.|++++|.++.+|..+ .++|+.|+|++
T Consensus 305 sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~ 376 (754)
T PRK15370 305 GITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSR 376 (754)
T ss_pred hHHHHHhcCCccc-cCCccc--cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCC
Confidence 8999999998865 456544 368999999998654 577655 379999999999999998766 37899999999
Q ss_pred CCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCccc----CCCCCCCEEECCCCCCCc
Q 044535 831 CKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSAL----TCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 831 ~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~n~l~~ 887 (1085)
|. +..+|.... .+|+.|++++|++..+|..+ ..++++..|++.+|.++.
T Consensus 377 N~-----Lt~LP~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 377 NA-----LTNLPENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred Cc-----CCCCCHhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 98 777887432 37999999999999887654 446889999999999875
No 21
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.58 E-value=5.7e-15 Score=144.58 Aligned_cols=130 Identities=42% Similarity=0.638 Sum_probs=109.8
Q ss_pred Ccc-ccccCchhHHHHHHHHhCCCeEEecCCCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccC
Q 044535 1 FRG-EDTRSNFTSHLYAALCRAKIETFIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTT 79 (1085)
Q Consensus 1 frg-~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~ 79 (1085)
|++ +++++.|+.+|.++|...|+.+|.|+....|.... +|.+||++|++.|+|+|++|..|.||..|+..+.++...
T Consensus 8 ys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~- 85 (140)
T smart00255 8 YSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALE- 85 (140)
T ss_pred CCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHH-
Confidence 445 57889999999999999999999998544444444 999999999999999999999999999999999997752
Q ss_pred CCCcEEEEEEeeecCccccccccchhHHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 044535 80 DMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKPKVLKWRAALTQVA 133 (1085)
Q Consensus 80 ~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~al~~~~ 133 (1085)
.....|+||+|+..|+++..+.+.+..++..+...+.....+ ..|++++..++
T Consensus 86 ~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 86 EGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred cCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 256799999999999999999999999998886555544433 78999888765
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.55 E-value=7.7e-16 Score=162.49 Aligned_cols=125 Identities=16% Similarity=0.213 Sum_probs=84.8
Q ss_pred ccCCceeEEEeeCCCCCCCCCCC--CCCCceEEecCCCCchhh-hHhhhhccccceecccCCCCCCCCC-C-CCCCCccc
Q 044535 567 ILSNELRYLHWHRYPLKSLPSNF--NPENLVELDMHHSNLEHL-WEEMQHALNLRRIDLSYSLHLNETP-D-LSSARNLE 641 (1085)
Q Consensus 567 ~l~~~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~-~-l~~l~~L~ 641 (1085)
.+|..-..+.|..|.|+++|... .+++|++|||++|+|+.+ |..++.+.+|..|-+-++..+..+| + |.++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 34556778888899999998754 789999999999999866 5678888888777776644444445 3 88888888
Q ss_pred EEeccCcccc---cccCCCCCCccEEecCCCccccccc-cccCCCcccEEEccC
Q 044535 642 IMVLDGCYSL---IKFPKTSWSITELDLGETAIEEVPP-AIESLGKLVVLRLDN 691 (1085)
Q Consensus 642 ~L~L~~~~~l---~~~~~~~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~ 691 (1085)
.|.+.-|... ......+.++..|.+..|.+..++. .+..+..++.+.+..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhc
Confidence 8877655422 1222334456666666666666665 455555555555543
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=3.2e-15 Score=168.94 Aligned_cols=215 Identities=23% Similarity=0.160 Sum_probs=132.4
Q ss_pred ccccccCCCcccEEEccCCCCCCccCCcccCCCC---ccEEEecccCCCccCCCCCCCccccCcccccccccCcccccC-
Q 044535 674 VPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTS---LTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECL- 749 (1085)
Q Consensus 674 lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l- 749 (1085)
++..+..+++|+.|++++|......+..+..+.+ |++|++++|.... .....+...+..+
T Consensus 73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~----------------~~~~~l~~~l~~~~ 136 (319)
T cd00116 73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGD----------------RGLRLLAKGLKDLP 136 (319)
T ss_pred HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccch----------------HHHHHHHHHHHhCC
Confidence 4445666777778887777655444443433333 7777777764221 1111233344555
Q ss_pred CCCCEEEccCCcccc----cccccccCCCCCcEEEeeCCCCCC----CcchhhcCCCCccEEEccCCCCc-----ccCcc
Q 044535 750 TELTVLRLQKCKRLK----RVSSSICKLKSLEILYLFGCSKLE----GLPEILESMERLETLYLAGTPIK-----ELPSS 816 (1085)
Q Consensus 750 ~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~i~-----~lp~~ 816 (1085)
++|+.|++++|.+.. .++..+..+++|++|++++|.... .++..+..+++|+.|++++|.++ .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 778888888887652 233445667778888888876553 23334555668888888888775 33445
Q ss_pred ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-----CCcccCCCCCCCEEECCCCCCCcCC--
Q 044535 817 IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-----LPSALTCLSSLEILGLSGNIFESLN-- 889 (1085)
Q Consensus 817 l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l~-- 889 (1085)
+..+++|+.|++++|.-....+..+........+.|+.|++++|.++. +...+..+++|+.+++++|.++..+
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 667788888888888711100111111111234788999999988862 4455666788999999998888653
Q ss_pred -----CCCC-CCCCEeecccc
Q 044535 890 -----LKPF-SCLTHLNVSYC 904 (1085)
Q Consensus 890 -----~~~l-~~L~~L~l~~c 904 (1085)
+... +.|+.|++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHhhcCCchhhcccCCC
Confidence 3344 56777776654
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-15 Score=161.26 Aligned_cols=296 Identities=22% Similarity=0.293 Sum_probs=155.1
Q ss_pred EEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHh-hhhccccceecccCCCCCCCCCC-CCCCCcccEEeccCccccc
Q 044535 575 LHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLDGCYSLI 652 (1085)
Q Consensus 575 L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~ 652 (1085)
.+.++-.+..+|... +..-+.++|..|.|+.+|.+ ++.+++||.||||+|.+....|+ |.++.+|-.|.+-+++.+.
T Consensus 51 VdCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 455666677777765 45678899999999999876 89999999999999998888785 8999999888887766665
Q ss_pred ccCCC----CCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCC-cccCCCCccEEEecccCCCccCCCCC
Q 044535 653 KFPKT----SWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPS-SICNLTSLTELALHGCSNITKFPDIS 726 (1085)
Q Consensus 653 ~~~~~----~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~ 726 (1085)
.+|+. +.+++-|.+.-|.+..++. .+..|++|..|.+.+| ....++. .+..+.+++.+.+..|..+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icd----- 203 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICD----- 203 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccc-----
Confidence 55543 2344555555555554433 2445555555555543 2233333 344455555555444321110
Q ss_pred CCccccCcccccccccCcccccCCCCCEEEccCCcccccccccc-cCCCCCcEEEeeCCCCCCCcc-hhhcCCCCccEEE
Q 044535 727 GDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSI-CKLKSLEILYLFGCSKLEGLP-EILESMERLETLY 804 (1085)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l-~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~ 804 (1085)
.+|+.+- ......|..++.+.......+.+.+....-+.-+ ..+.++..=-.+.|......| ..|..+++|++|+
T Consensus 204 CnL~wla---~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln 280 (498)
T KOG4237|consen 204 CNLPWLA---DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN 280 (498)
T ss_pred cccchhh---hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence 0000000 0000112222222222222222222111111101 111111111112222222222 2355566666666
Q ss_pred ccCCCCcccC-ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-CCcccCCCCCCCEEECCC
Q 044535 805 LAGTPIKELP-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-LPSALTCLSSLEILGLSG 882 (1085)
Q Consensus 805 L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~ 882 (1085)
|++|.|+.+. .++..+..+++|.|..|+ +..+....|.++..|+.|+|.+|+++. .|..|..+.+|.+|+|-.
T Consensus 281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~-----l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 281 LSNNKITRIEDGAFEGAAELQELYLTRNK-----LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred cCCCccchhhhhhhcchhhhhhhhcCcch-----HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 6666666543 355556666666666665 444555555566666666666666654 344555555566666555
Q ss_pred CCC
Q 044535 883 NIF 885 (1085)
Q Consensus 883 n~l 885 (1085)
|.+
T Consensus 356 Np~ 358 (498)
T KOG4237|consen 356 NPF 358 (498)
T ss_pred Ccc
Confidence 544
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=5.1e-15 Score=138.57 Aligned_cols=127 Identities=32% Similarity=0.482 Sum_probs=80.0
Q ss_pred ccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCC-CcchhhcCCCCccEEEccCCCCcccCc
Q 044535 737 TAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLE-GLPEILESMERLETLYLAGTPIKELPS 815 (1085)
Q Consensus 737 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~i~~lp~ 815 (1085)
|+++++|.+++.+++|+.|++.-|+ +..+|..|+.+|.|+.|++++|+..+ .+|..|..|..|+-|+++.|.+.-+|.
T Consensus 66 nqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~ 144 (264)
T KOG0617|consen 66 NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP 144 (264)
T ss_pred chhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh
Confidence 5556666666666666666666544 34566667777777777777665543 456666667777777777777777777
Q ss_pred cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccC
Q 044535 816 SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALT 870 (1085)
Q Consensus 816 ~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 870 (1085)
.++.+++|+.|.+..|. +-.+|. .++.+..|++|++.+|+++-+|+.++
T Consensus 145 dvg~lt~lqil~lrdnd-----ll~lpk-eig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 145 DVGKLTNLQILSLRDND-----LLSLPK-EIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred hhhhhcceeEEeeccCc-----hhhCcH-HHHHHHHHHHHhcccceeeecChhhh
Confidence 77777766666666666 334444 24455555555555555555555443
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.41 E-value=3.6e-14 Score=160.35 Aligned_cols=259 Identities=22% Similarity=0.168 Sum_probs=145.3
Q ss_pred CCCCceEEecCCCCch-----hhhHhhhhccccceecccCCCCCCCCC-------CCCCCCcccEEeccCcccccccCCC
Q 044535 590 NPENLVELDMHHSNLE-----HLWEEMQHALNLRRIDLSYSLHLNETP-------DLSSARNLEIMVLDGCYSLIKFPKT 657 (1085)
Q Consensus 590 ~l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~~~~~~~~~-------~l~~l~~L~~L~L~~~~~l~~~~~~ 657 (1085)
.+.+|++|+++++.+. .++..+...++|++|+++++....... .+..+++|+.|++++|....
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----- 95 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP----- 95 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh-----
Confidence 3455777777777763 455566677778888777765432000 13445566666665554321
Q ss_pred CCCccEEecCCCccccccccccCC---CcccEEEccCCCCCC----ccCCcccCC-CCccEEEecccCCCccCCCCCCCc
Q 044535 658 SWSITELDLGETAIEEVPPAIESL---GKLVVLRLDNCRRLK----NLPSSICNL-TSLTELALHGCSNITKFPDISGDM 729 (1085)
Q Consensus 658 ~~~L~~L~Ls~~~i~~lp~~i~~l---~~L~~L~L~~~~~~~----~lp~~l~~l-~~L~~L~L~~~~~~~~~p~~~~~L 729 (1085)
..+..+..+ ++|++|++++|.... .+...+..+ ++|+.|++++|....
T Consensus 96 ---------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~--------- 151 (319)
T cd00116 96 ---------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG--------- 151 (319)
T ss_pred ---------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc---------
Confidence 222223222 347777777765431 122223344 677777777764221
Q ss_pred cccCcccccccccCcccccCCCCCEEEccCCcccc----cccccccCCCCCcEEEeeCCCCCCC----cchhhcCCCCcc
Q 044535 730 KYLSLSETAIEELPSSVECLTELTVLRLQKCKRLK----RVSSSICKLKSLEILYLFGCSKLEG----LPEILESMERLE 801 (1085)
Q Consensus 730 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~ 801 (1085)
.....++..+..+++|++|++++|...+ .++..+..+++|+.|++++|..... ++..+..+++|+
T Consensus 152 -------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~ 224 (319)
T cd00116 152 -------ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLE 224 (319)
T ss_pred -------hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCC
Confidence 1111233445556677777777776542 2333344556777777777755422 334455677788
Q ss_pred EEEccCCCCccc-----Cccc-cCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-----CCcccC
Q 044535 802 TLYLAGTPIKEL-----PSSI-DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-----LPSALT 870 (1085)
Q Consensus 802 ~L~L~~~~i~~l-----p~~l-~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~ 870 (1085)
.|++++|.++.. ...+ ...+.|+.|++++|.........+. ..+..+++|+.|++++|.+.. +...+.
T Consensus 225 ~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~ 303 (319)
T cd00116 225 VLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDLRGNKFGEEGAQLLAESLL 303 (319)
T ss_pred EEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEECCCCCCcHHHHHHHHHHHh
Confidence 888888777631 1111 1247888888888861100001111 134556788888888888883 333444
Q ss_pred CC-CCCCEEECCCCCC
Q 044535 871 CL-SSLEILGLSGNIF 885 (1085)
Q Consensus 871 ~l-~~L~~L~L~~n~l 885 (1085)
.. +.|+.|++.+|.+
T Consensus 304 ~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 304 EPGNELESLWVKDDSF 319 (319)
T ss_pred hcCCchhhcccCCCCC
Confidence 55 6888888887754
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=3.9e-15 Score=139.34 Aligned_cols=154 Identities=29% Similarity=0.401 Sum_probs=81.0
Q ss_pred CccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccC
Q 044535 728 DMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAG 807 (1085)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 807 (1085)
+++.|.++.|.+..+|..+..+.+|+.|++++|+ ...+|.++++++.|+.|++.- +.+..+|..|+.++.|+.|++..
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccc
Confidence 3445555556666666666666666666666654 344555566666666666543 23444555555555555555555
Q ss_pred CCCc--ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCC
Q 044535 808 TPIK--ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIF 885 (1085)
Q Consensus 808 ~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 885 (1085)
|++. .+|..+..+..|+.|+|++|. +.-+|+ ..+++++|+.|.+.+|.+.++|..++.++.|+.|.+.+|.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dnd-----fe~lp~-dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDND-----FEILPP-DVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCCC-----cccCCh-hhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 5554 344444444445555555554 333333 24444455555555554444554444444444444444444
Q ss_pred CcCC
Q 044535 886 ESLN 889 (1085)
Q Consensus 886 ~~l~ 889 (1085)
+-+|
T Consensus 186 ~vlp 189 (264)
T KOG0617|consen 186 TVLP 189 (264)
T ss_pred eecC
Confidence 4443
No 28
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=6.2e-11 Score=153.68 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=178.2
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
+|.....+|-|..-++.+.. ....+++.|.|++|.||||++..+.++. +.++|+.. .. .+.+......
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l-~~--~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSL-DE--SDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEec-Cc--ccCCHHHHHH
Confidence 55667788988876666643 2357899999999999999999988642 35778843 22 1122233333
Q ss_pred HHHHHHhcCCCC---CC------CCCccchHH---HHHhh-c-CCceEEEEeCCCCHH------HHHHHhcCCCCCCCCC
Q 044535 246 ELFSRLLEDGDL---SL------GASGLGHTF---MNTRL-R-RKTVLIVLDDVENSQ------QLKNLAGDHGWFGLGS 305 (1085)
Q Consensus 246 ~ll~~~~~~~~~---~~------~~~~~~~~~---l~~~l-~-~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs 305 (1085)
.++..+...... .. ......... +-..+ . +.+++|||||+...+ .+..+... ..++.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCe
Confidence 333333211100 00 000111111 22222 2 689999999996542 23444433 24677
Q ss_pred EEEEEeCChhhh---hc-CCCeEEEee----cCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhh
Q 044535 306 RIIITSRDKQVL---KT-GVDEMYEVE----ELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCF 377 (1085)
Q Consensus 306 ~IiiTTR~~~v~---~~-~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~ 377 (1085)
++|||||...-. .. ......++. +|+.+|+.++|...... .-..+...++.+.++|+|+++..++..
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 899999974222 11 123345666 99999999999765421 122345678999999999999998877
Q ss_pred hcCCCHHHHHHHHHhhhcCCCchHHHHHHh-hcCCCCHhHHHHHhhhhcccCCCCHHHHHHHHhhCCCCcchhhHHHhhc
Q 044535 378 LFGRSKRDWESALNKLRKNPNMEIQNVLRI-TYDTLDDEEKAIFLDIACFFKGDNRDHVTTILDGCGFSTEIGISVLIDK 456 (1085)
Q Consensus 378 L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~ 456 (1085)
+...... .......+...+...+...+.- .++.||++.++.++..|+++ .++.+.+..+.. .-.+...+..|.+.
T Consensus 229 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~ 304 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQ 304 (903)
T ss_pred HhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHC
Confidence 6543210 0111122222223345554433 37899999999999999986 555544444432 12346778999999
Q ss_pred cceEE-c---CCceeechHHHHHhceeee
Q 044535 457 CLITV-T---DDRLLMHDLLQEMGWGIVR 481 (1085)
Q Consensus 457 ~Li~~-~---~~~~~mHdli~~~~~~i~~ 481 (1085)
+++.. . ..+|.+|++++++.+....
T Consensus 305 ~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 305 GLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 98653 2 2368899999999887653
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=4.8e-12 Score=156.29 Aligned_cols=311 Identities=25% Similarity=0.292 Sum_probs=170.1
Q ss_pred ceeEEEeeCCCCCCCCCCCCCCCceEEecCCCC--chhhhHh-hhhccccceecccCCCCCCCCCC-CCCCCcccEEecc
Q 044535 571 ELRYLHWHRYPLKSLPSNFNPENLVELDMHHSN--LEHLWEE-MQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLD 646 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~--i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~ 646 (1085)
..|.+.+.++.+..++.....++|++|-+..|. +..++.. +..++.|++|||++|.....+|+ ++.+-
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li-------- 595 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV-------- 595 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh--------
Confidence 566677777777666666655566666666664 3433322 44555566665555544444442 34344
Q ss_pred CcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCC
Q 044535 647 GCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS 726 (1085)
Q Consensus 647 ~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~ 726 (1085)
+|++|+++++.+..+|.++++|.+|.+|++..+..+..+|..+..+++|++|.+.... .
T Consensus 596 -------------~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~------- 654 (889)
T KOG4658|consen 596 -------------HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-L------- 654 (889)
T ss_pred -------------hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-c-------
Confidence 4555556666778999999999999999999888777777766679999999987632 0
Q ss_pred CCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCc----EEEeeCCCCCCCcchhhcCCCCccE
Q 044535 727 GDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLE----ILYLFGCSKLEGLPEILESMERLET 802 (1085)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~ 802 (1085)
......+ ..+.++.+|+.+....... .+-..+..++.|. .+.+.+ ......+..+..+.+|+.
T Consensus 655 ------~~~~~~l----~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~ 721 (889)
T KOG4658|consen 655 ------SNDKLLL----KELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEE 721 (889)
T ss_pred ------ccchhhH----Hhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcce
Confidence 0000111 1124455555555544332 1111122233333 333322 233344556677888888
Q ss_pred EEccCCCCcccCc-cc-----cC-CCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-CCcccCCCCC
Q 044535 803 LYLAGTPIKELPS-SI-----DH-LPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-LPSALTCLSS 874 (1085)
Q Consensus 803 L~L~~~~i~~lp~-~l-----~~-l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~ 874 (1085)
|.+.++.+.+... +. .. +++|..+.+.+|..... +. ...-.++|+.|.+..|...+ +.+....+..
T Consensus 722 L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~-----l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~ 795 (889)
T KOG4658|consen 722 LSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD-----LT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLE 795 (889)
T ss_pred EEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccc-----cc-hhhccCcccEEEEecccccccCCCHHHHhhh
Confidence 8888887764321 11 11 44555566666652211 11 12345788888888887764 3333444444
Q ss_pred CCEEECCCCCCCcCCCCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCCCCCCcccCCCc
Q 044535 875 LEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYLETVPASAD 938 (1085)
Q Consensus 875 L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~L~~~~~~~~ 938 (1085)
+..+-+..+.+..++ ...++.+.+.+..+|-. .+.|..+.+..||.+..+|....
T Consensus 796 l~~~i~~f~~~~~l~-------~~~~l~~l~~i~~~~l~--~~~l~~~~ve~~p~l~~~P~~~~ 850 (889)
T KOG4658|consen 796 LKELILPFNKLEGLR-------MLCSLGGLPQLYWLPLS--FLKLEELIVEECPKLGKLPLLST 850 (889)
T ss_pred cccEEecccccccce-------eeecCCCCceeEecccC--ccchhheehhcCcccccCccccc
Confidence 554434333333331 12222222222222211 11266788888888888877544
No 30
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.10 E-value=4.4e-11 Score=109.73 Aligned_cols=83 Identities=33% Similarity=0.543 Sum_probs=69.2
Q ss_pred CccccccCchhHHHHHHHHhCCCeEEecCCCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccCC
Q 044535 1 FRGEDTRSNFTSHLYAALCRAKIETFIDYQLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTTD 80 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~gi~~f~d~~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~~ 80 (1085)
|+++| +.|+..|.+.|+++|+++|.|.++..|+.+..++.+||++|+..|+++|++|..|.||..|+..+.+
T Consensus 5 ~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~------ 76 (102)
T PF13676_consen 5 YSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK------ 76 (102)
T ss_dssp EEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC------
T ss_pred ecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH------
Confidence 45677 5599999999999999999999899999999999999999999999999999999999999998843
Q ss_pred CCcEEEEEEee
Q 044535 81 MGQIVLPVFYH 91 (1085)
Q Consensus 81 ~~~~v~pvfy~ 91 (1085)
.+..|+||..+
T Consensus 77 ~~~~iipv~~~ 87 (102)
T PF13676_consen 77 RGKPIIPVRLD 87 (102)
T ss_dssp TSESEEEEECS
T ss_pred CCCEEEEEEEC
Confidence 33479999743
No 31
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.09 E-value=5.3e-09 Score=121.63 Aligned_cols=247 Identities=19% Similarity=0.116 Sum_probs=146.3
Q ss_pred CCCCCccccchhHHHHHHhhccC--CCceEEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEEeehhhhhhhhcHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIG--LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l 243 (1085)
..++.++||+.++++|...+... ......+.|+|++|+|||++++.+++.+....+ ..+++.+. .......+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~----~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ----IDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC----cCCCHHHH
Confidence 35678999999999999988432 233456789999999999999999998765542 23444322 22234566
Q ss_pred HHHHHHHHhcCCCCCCC-CCccchHHHHHhhc--CCceEEEEeCCCCHH------HHHHHhcCCCCCCCCCE--EEEEeC
Q 044535 244 QEELFSRLLEDGDLSLG-ASGLGHTFMNTRLR--RKTVLIVLDDVENSQ------QLKNLAGDHGWFGLGSR--IIITSR 312 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~--IiiTTR 312 (1085)
...++.++.+....... ...+....+.+.+. +++.+||||+++... .+..+...... .++++ +|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEEC
Confidence 66777776552211111 12233344555554 456899999998753 34444432221 12333 566666
Q ss_pred Chhhhhc--------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHH----hcCCchHHHHHhhhh--
Q 044535 313 DKQVLKT--------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHY----AKGIPLALKVLGCFL-- 378 (1085)
Q Consensus 313 ~~~v~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~----~~glPLal~~~g~~L-- 378 (1085)
+..+... .....+.+++++.++..+++..++-..-.+..-..+..+.+++. .|..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5443221 12356789999999999999877632111111112233334333 455777777664321
Q ss_pred ---cC---CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcc
Q 044535 379 ---FG---RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACF 426 (1085)
Q Consensus 379 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 426 (1085)
.+ -+.++.+.+.+... .....-.+..||.++|..+..++..
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 15566766666552 2234556789999999888776644
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.05 E-value=2.7e-09 Score=119.31 Aligned_cols=269 Identities=16% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCccccchhHHHHHHhhccC---CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIG---LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEEL 247 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~l 247 (1085)
..|||++..+++|..++... ......+.++|++|+|||+||+.+++.....+. +....... ....+. ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~~---~~~~l~-~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPALE---KPGDLA-AI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchhc---CchhHH-HH
Confidence 56999999999998888632 233456789999999999999999998754432 11110001 111111 11
Q ss_pred HHHHhcCCCCCCCCC----ccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc---C
Q 044535 248 FSRLLEDGDLSLGAS----GLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT---G 320 (1085)
Q Consensus 248 l~~~~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~---~ 320 (1085)
+..+....-.-+++. ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..||+...+... .
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhh
Confidence 111110000000000 00112233333334444444444333322211 1234555567776444332 2
Q ss_pred CCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHHHHHH-hhhcCCC-
Q 044535 321 VDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWESALN-KLRKNPN- 398 (1085)
Q Consensus 321 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~-~l~~~~~- 398 (1085)
....+++++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..++..+ |..+.. .-.....
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHH
Confidence 3457899999999999999887753221 2234667889999999996655544432 111100 0000000
Q ss_pred --chHHHHHHhhcCCCCHhHHHHHh-hhhcccCC-CCHHHHHHHHhhCCCCcchhhH-HHhhccceEEc
Q 044535 399 --MEIQNVLRITYDTLDDEEKAIFL-DIACFFKG-DNRDHVTTILDGCGFSTEIGIS-VLIDKCLITVT 462 (1085)
Q Consensus 399 --~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~i~-~L~~~~Li~~~ 462 (1085)
......+...|..+++.++..+. .++.+..+ ...+.+...+.......+..++ .|++++||...
T Consensus 221 ~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 221 IALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 11223356678899998888776 44556433 4566677776665566677677 69999999754
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=1.8e-09 Score=121.45 Aligned_cols=274 Identities=17% Similarity=0.124 Sum_probs=149.9
Q ss_pred cCCCCCccccchhHHHHHHhhcc---CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCI---GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|....+|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.....+. +. ..........
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~-~~~~~~~~~~---- 92 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---IT-SGPALEKPGD---- 92 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EE-ecccccChHH----
Confidence 44567899999999999887753 1234567889999999999999999998764432 11 1100000011
Q ss_pred HHHHHHHHhcCCCCCCCCCc----cchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc
Q 044535 244 QEELFSRLLEDGDLSLGASG----LGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT 319 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~----~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 319 (1085)
...++..+....-.-+++.+ ...+.+...+.+.+..+|+|+..+..++.. . ..+.+-|..|||...+...
T Consensus 93 l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~---l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 93 LAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---D---LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---c---CCCceEEeecCCcccCCHH
Confidence 11111111100000000000 001112222222333333333222211110 0 0123445566665433322
Q ss_pred ---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHHHHHHhhhcC
Q 044535 320 ---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWESALNKLRKN 396 (1085)
Q Consensus 320 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l~~~ 396 (1085)
.....+++++++.++..+++.+.+..... .-..+....|++.|+|.|-.+..+...+ ..|..... -...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCC
Confidence 23457899999999999999987754322 2334678899999999995544444322 12211110 0000
Q ss_pred CC---chHHHHHHhhcCCCCHhHHHHHh-hhhcccCC-CCHHHHHHHHhhCCCCcchhhH-HHhhccceEEc
Q 044535 397 PN---MEIQNVLRITYDTLDDEEKAIFL-DIACFFKG-DNRDHVTTILDGCGFSTEIGIS-VLIDKCLITVT 462 (1085)
Q Consensus 397 ~~---~~i~~~l~~sy~~L~~~~k~~fl-~~a~f~~~-~~~~~l~~~~~~~g~~~~~~i~-~L~~~~Li~~~ 462 (1085)
.. ......+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||+..
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 01 12334456778889998888886 55566554 3567777777655555666677 89999999754
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=1e-09 Score=117.77 Aligned_cols=196 Identities=18% Similarity=0.188 Sum_probs=98.9
Q ss_pred ccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH------H--
Q 044535 173 LIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL------Q-- 244 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l------~-- 244 (1085)
|+||++++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-..++|+......... ..... .
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 799999999999999754 346788999999999999999999874433344454332221111 11111 1
Q ss_pred --HHHHHHHhcCCC-----CCCCCCccchHHHHHhhc--CCceEEEEeCCCCHH-----------HHHHHhcCCCCCCCC
Q 044535 245 --EELFSRLLEDGD-----LSLGASGLGHTFMNTRLR--RKTVLIVLDDVENSQ-----------QLKNLAGDHGWFGLG 304 (1085)
Q Consensus 245 --~~ll~~~~~~~~-----~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~g 304 (1085)
+.+...+..... ............+.+.+. +++++||+||++... .+..+........ .
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-N 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-T
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-C
Confidence 111111111110 000111122223333333 356999999986554 1222333322222 3
Q ss_pred CEEEEEeCChhhhhc---------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHH
Q 044535 305 SRIIITSRDKQVLKT---------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKV 373 (1085)
Q Consensus 305 s~IiiTTR~~~v~~~---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 373 (1085)
-.+|+++....+... +....+.+++|+.+++++++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344455444433321 233459999999999999998765322 11112345568999999999988764
No 35
>PF05729 NACHT: NACHT domain
Probab=99.00 E-value=2.6e-09 Score=107.87 Aligned_cols=142 Identities=23% Similarity=0.325 Sum_probs=85.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc-----ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE-----GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFM 269 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-----~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l 269 (1085)
|++.|+|.+|+||||+++.++.++..... ...++...+..........+...+........ ... ...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~---~~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----API---EELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhh---HHHH
Confidence 57899999999999999999987765442 22333333333332222233333333322211 001 1112
Q ss_pred HH-hhcCCceEEEEeCCCCHHH---------HHHHhc-CCC-CCCCCCEEEEEeCChhh--hhc--CCCeEEEeecCCHH
Q 044535 270 NT-RLRRKTVLIVLDDVENSQQ---------LKNLAG-DHG-WFGLGSRIIITSRDKQV--LKT--GVDEMYEVEELNCR 333 (1085)
Q Consensus 270 ~~-~l~~kr~LlVLDdv~~~~~---------~~~l~~-~~~-~~~~gs~IiiTTR~~~v--~~~--~~~~~~~l~~L~~~ 333 (1085)
.. ..+.++++||||+++.... +..+.. ... ...++.+||||+|.... ... .....+++.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 22 2357899999999965432 112221 111 12468999999998766 222 44468999999999
Q ss_pred HHHHHHHHhh
Q 044535 334 EALQLFSLNA 343 (1085)
Q Consensus 334 ea~~Lf~~~a 343 (1085)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997654
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.97 E-value=3.6e-11 Score=133.28 Aligned_cols=164 Identities=26% Similarity=0.390 Sum_probs=126.4
Q ss_pred cCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc
Q 044535 732 LSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK 811 (1085)
Q Consensus 732 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~ 811 (1085)
|.+..|.+..+|..+.++..|..|+|+.|++ ..+|..++.|+ |+.|-+++ +++..+|+.++..+.|..|+.+.|.+.
T Consensus 103 liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 103 LILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhh
Confidence 3444455666666666677777777766653 45566666666 77887776 466778888888888999999999999
Q ss_pred ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC--
Q 044535 812 ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-- 889 (1085)
Q Consensus 812 ~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-- 889 (1085)
.+|+.++.+.+|+.|.+..|. +..+|.... .-.|..||+|+|+++.||-+|.+|..|++|-|.+|.+++-|
T Consensus 180 slpsql~~l~slr~l~vrRn~-----l~~lp~El~--~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNH-----LEDLPEELC--SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhh-----hhhCCHHHh--CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 999999999999999999888 667777543 34588999999999999999999999999999999999877
Q ss_pred ---CCCCCCCCEeeccccc
Q 044535 890 ---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 890 ---~~~l~~L~~L~l~~c~ 905 (1085)
-+...--++|++.-|.
T Consensus 253 IC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 253 ICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhccceeeeeeecchhcc
Confidence 2233345778888774
No 37
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.95 E-value=6.6e-08 Score=111.27 Aligned_cols=248 Identities=17% Similarity=0.146 Sum_probs=140.5
Q ss_pred CCCCCccccchhHHHHHHhhcc--CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc------ceEEEeehhhhhhhhc
Q 044535 168 GALDGLIGIESRVEKVESLLCI--GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE------GCCFLENVREESAKRG 239 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~------~~~~~~~~~~~s~~~~ 239 (1085)
..++.++||+.++++|...+.. .......+.|+|++|+|||++++++++.+..... ..+|+.+. ....
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCC
Confidence 4456899999999999998863 1233457899999999999999999987654322 23444332 1223
Q ss_pred HHHHHHHHHHHHhc--CCCCCCC-CCccchHHHHHhhc--CCceEEEEeCCCCHH-----HHHHHhcCCCC-CC--CCCE
Q 044535 240 VHRLQEELFSRLLE--DGDLSLG-ASGLGHTFMNTRLR--RKTVLIVLDDVENSQ-----QLKNLAGDHGW-FG--LGSR 306 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~--~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~-~~--~gs~ 306 (1085)
...+...++.++.. ....... ...+....+.+.+. +++++||||+++... .+..+.....+ .. ..-.
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 44556666666642 1101100 11122233444442 567899999998762 13333322111 11 2334
Q ss_pred EEEEeCChhhhhc--------CCCeEEEeecCCHHHHHHHHHHhhc---cCCCCCCCHHHHHHHHHHHhcCCc-hHHHHH
Q 044535 307 IIITSRDKQVLKT--------GVDEMYEVEELNCREALQLFSLNAF---KLNHPTEDYMGLSNQVVHYAKGIP-LALKVL 374 (1085)
Q Consensus 307 IiiTTR~~~v~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 374 (1085)
+|.+|........ .....+.+++++.+|..+++..++- ......++..+...+++....|.| .|+.++
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4555544432211 1135689999999999999988763 111122333344555666777877 443333
Q ss_pred hhhh-----cC---CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcc
Q 044535 375 GCFL-----FG---RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACF 426 (1085)
Q Consensus 375 g~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 426 (1085)
-... .+ -+.++.+.+.+.+. .....-+...||.+++.++..++..
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 11 24555555555442 2334456678999888777766543
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=2.5e-09 Score=124.47 Aligned_cols=169 Identities=33% Similarity=0.468 Sum_probs=88.7
Q ss_pred CCccEEecCCCccccccccccCCC-cccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCC---CCCCccccCc
Q 044535 659 WSITELDLGETAIEEVPPAIESLG-KLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPD---ISGDMKYLSL 734 (1085)
Q Consensus 659 ~~L~~L~Ls~~~i~~lp~~i~~l~-~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~---~~~~L~~L~L 734 (1085)
..++.|++.+|.+..+++....+. +|+.|+++++ .+..+|..+..+++|+.|+++.|+. ..+|. ...+++.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheec
Confidence 356667777777777777777774 7777777774 4455555567777777777776533 22332 3345555555
Q ss_pred ccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccC
Q 044535 735 SETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELP 814 (1085)
Q Consensus 735 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp 814 (1085)
++|.+..+|..+..+..|++|.+++|... ..+..+..++++..|.+.+|. ...++..++.+++|+.|++++|.++.++
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce-eeeccchhccccccceeccccccccccc
Confidence 55666666655544445555555555411 122223344444444433321 2222334444444444444444444444
Q ss_pred ccccCCCCCCEEEccCCC
Q 044535 815 SSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 815 ~~l~~l~~L~~L~L~~~~ 832 (1085)
. +..+.+|+.|+++++.
T Consensus 272 ~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 272 S-LGSLTNLRELDLSGNS 288 (394)
T ss_pred c-ccccCccCEEeccCcc
Confidence 3 4444444444444444
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=1.4e-10 Score=128.79 Aligned_cols=210 Identities=24% Similarity=0.344 Sum_probs=116.9
Q ss_pred EEeeCCCCCCCCCCC---CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccc
Q 044535 575 LHWHRYPLKSLPSNF---NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSL 651 (1085)
Q Consensus 575 L~l~~~~l~~lp~~~---~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l 651 (1085)
|.|++-.++.+|... .+..-...||+.|.+..+|..+..+..|..+.|..|.+-...+.+.++..|.+|+|+.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N--- 131 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN--- 131 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc---
Confidence 445555566666543 45566778888899999998888888888888887765555445555555555554443
Q ss_pred cccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccc
Q 044535 652 IKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKY 731 (1085)
Q Consensus 652 ~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~ 731 (1085)
.+..+|..++.|+ |+.|-+++ +.++.+|..++.+..|..|+.+.
T Consensus 132 ------------------qlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~---------------- 175 (722)
T KOG0532|consen 132 ------------------QLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK---------------- 175 (722)
T ss_pred ------------------hhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh----------------
Confidence 3345555555444 45555554 23445555555444444444443
Q ss_pred cCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc
Q 044535 732 LSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK 811 (1085)
Q Consensus 732 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~ 811 (1085)
|.+..+|..++.+.+|+.|.+..|+.. .+|..++.|+ |..|+++. ++...+|-.|..|..|++|-|.+|+++
T Consensus 176 -----nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 176 -----NEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -----hhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeeccc-CceeecchhhhhhhhheeeeeccCCCC
Confidence 334445555555555555555554432 3333344332 55555543 344455556666666666666666665
Q ss_pred ccCccc---cCCCCCCEEEccCC
Q 044535 812 ELPSSI---DHLPQLSLLSLENC 831 (1085)
Q Consensus 812 ~lp~~l---~~l~~L~~L~L~~~ 831 (1085)
.-|..+ +...-.++|+..-|
T Consensus 248 SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 248 SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CChHHHHhccceeeeeeecchhc
Confidence 554433 22223445555555
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.6e-10 Score=122.98 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=68.7
Q ss_pred cCCCCCEEEccCCcccc-cccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccC--ccccCCCCCC
Q 044535 748 CLTELTVLRLQKCKRLK-RVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELP--SSIDHLPQLS 824 (1085)
Q Consensus 748 ~l~~L~~L~L~~~~~~~-~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~ 824 (1085)
.+++|+.|.|+.|.+.- .+...+..+|+|+.|++.+|+..........-+..|+.|+|++|++...+ ...+.++.|.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchh
Confidence 34566666666665432 12222344566666666666432222222233455666666666665554 3455666666
Q ss_pred EEEccCCCchhhhccCCchh------hhcCCCCccEEecCCCCCCCCCc--ccCCCCCCCEEECCCCCCCc
Q 044535 825 LLSLENCKNILVFLTNLPLA------LLSGLCSLTELHLNDCNLLELPS--ALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~------~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~ 887 (1085)
.|+++.|. ++.+... ....+++|+.|+++.|++.+++. .+..+++|+.|.+..|.++.
T Consensus 275 ~Lnls~tg-----i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTG-----IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccC-----cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 66666665 2222111 12445566666666666654432 34445555555555555543
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=1.5e-08 Score=126.18 Aligned_cols=308 Identities=16% Similarity=0.192 Sum_probs=181.3
Q ss_pred ccccchhHHHHHHhhccC-CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcce---E------------EEeehhhhhh
Q 044535 173 LIGIESRVEKVESLLCIG-LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGC---C------------FLENVREESA 236 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~---~------------~~~~~~~~s~ 236 (1085)
++||+.+++.|...+..- .....++.+.|.+|||||+|+++|...+...+... . |+..++....
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 789999999998888643 34467999999999999999999998776552211 1 1111111100
Q ss_pred ------hhcHHHHHHHHHHHHhcCCCCCC----------C------C-Ccc---------chHHHHHhh-cCCceEEEEe
Q 044535 237 ------KRGVHRLQEELFSRLLEDGDLSL----------G------A-SGL---------GHTFMNTRL-RRKTVLIVLD 283 (1085)
Q Consensus 237 ------~~~~~~l~~~ll~~~~~~~~~~~----------~------~-~~~---------~~~~l~~~l-~~kr~LlVLD 283 (1085)
.........+++..+...+...+ + . .+. ....+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 00111111222222211110000 0 0 000 011122233 3569999999
Q ss_pred CCCCHH-H----HHHHhcCCC--CC-CCCCEEEEEeCCh--hhhhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCC
Q 044535 284 DVENSQ-Q----LKNLAGDHG--WF-GLGSRIIITSRDK--QVLKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTED 352 (1085)
Q Consensus 284 dv~~~~-~----~~~l~~~~~--~~-~~gs~IiiTTR~~--~v~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 352 (1085)
|+.-.+ . ++.+..... .+ ....-.+.|.+.. .+... .....+.+.+|+..+..++......... ..
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---~~ 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---LL 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc---cc
Confidence 993322 1 333333221 00 0011222333332 11122 4557899999999999999976653212 23
Q ss_pred HHHHHHHHHHHhcCCchHHHHHhhhhcCC-------CHHHHHHHHHhhhcCCC-chHHHHHHhhcCCCCHhHHHHHhhhh
Q 044535 353 YMGLSNQVVHYAKGIPLALKVLGCFLFGR-------SKRDWESALNKLRKNPN-MEIQNVLRITYDTLDDEEKAIFLDIA 424 (1085)
Q Consensus 353 ~~~~~~~i~~~~~glPLal~~~g~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl~~a 424 (1085)
..+..+.|+++.+|+|+.+..+-..+... +...|..-...+...+. +.+...+..-.+.||...++++-..|
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA 318 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAAA 318 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34667899999999999999998888653 33455554444443321 22555688889999999999999999
Q ss_pred cccCCCCHHHHHHHHhhCCCCcchhhHHHhhccceEEc-----------CC-ceeechHHHHHhceeeecc
Q 044535 425 CFFKGDNRDHVTTILDGCGFSTEIGISVLIDKCLITVT-----------DD-RLLMHDLLQEMGWGIVRQE 483 (1085)
Q Consensus 425 ~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~~~Li~~~-----------~~-~~~mHdli~~~~~~i~~~e 483 (1085)
|+.+.++.+.+..++...+......+......++|.+. .. +-+.|+.+|+.+.....+.
T Consensus 319 ~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 319 CIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 99999998888888765443333333333344555431 11 3378999999988765543
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=4.3e-10 Score=115.01 Aligned_cols=124 Identities=24% Similarity=0.282 Sum_probs=64.8
Q ss_pred CCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCE
Q 044535 798 ERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEI 877 (1085)
Q Consensus 798 ~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 877 (1085)
..|++|+|++|.|+.+.+++.-.|.++.|+++.|. +..+.. +..+++|+.||||+|.++++..+-..+-+.++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-----i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-----IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-----eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 44555555555555555555555556666665555 333322 45555566666666655555555555555555
Q ss_pred EECCCCCCCcCC-CCCCCCCCEeeccccc--cccccCCCCCCCCCCeEEEeCCC
Q 044535 878 LGLSGNIFESLN-LKPFSCLTHLNVSYCK--RLQSLQEFPSPLRLVNLQAHECI 928 (1085)
Q Consensus 878 L~L~~n~l~~l~-~~~l~~L~~L~l~~c~--~L~~lp~l~~~~~L~~L~i~~c~ 928 (1085)
|.|++|.+.+++ +..+-+|..|++++|+ .+.....+++.+-|+.|.+.++|
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 666666555554 5555555555555543 12222233444444444444444
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=2.5e-09 Score=124.46 Aligned_cols=174 Identities=31% Similarity=0.419 Sum_probs=97.0
Q ss_pred ccccCcccccccccCcccccCC-CCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccC
Q 044535 729 MKYLSLSETAIEELPSSVECLT-ELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAG 807 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l~-~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 807 (1085)
+..|++.++.+..+|.....+. +|+.|++++|... .+|..+..+++|+.|++++|+. ..+|...+..++|+.|++++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheeccC
Confidence 4444444455555555555553 5555555555432 2333345556666666655433 23333333556666666666
Q ss_pred CCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCc
Q 044535 808 TPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 808 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 887 (1085)
|.+..+|..+..+.+|++|.+++|. ....+. .+..+.++..|.+.+|++..++..++.+++|+.|++++|.++.
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~-----~~~~~~-~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNS-----IIELLS-SLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCc-----ceecch-hhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 6666666655555556666666664 111111 2455566666666666666666666666666666666666666
Q ss_pred CC-CCCCCCCCEeecccccccccc
Q 044535 888 LN-LKPFSCLTHLNVSYCKRLQSL 910 (1085)
Q Consensus 888 l~-~~~l~~L~~L~l~~c~~L~~l 910 (1085)
++ +..+.+|+.|+++++.....+
T Consensus 270 i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 270 ISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccccCccCEEeccCccccccc
Confidence 65 666666666666665544333
No 44
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.86 E-value=8.5e-08 Score=105.31 Aligned_cols=178 Identities=16% Similarity=0.127 Sum_probs=103.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH--
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT-- 271 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~-- 271 (1085)
..++.|+|++|+||||+|+.+++.....=...+++.. .......+...+...+.... .. .........+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~-~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLET-EG-RDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCC-CC-CCHHHHHHHHHHHH
Confidence 4578999999999999999999876522111223221 11233455555555443221 11 111111122222
Q ss_pred ---hhcCCceEEEEeCCCCHH--HHHHHhc---CCCCCCCCCEEEEEeCChhh--hh------c--CCCeEEEeecCCHH
Q 044535 272 ---RLRRKTVLIVLDDVENSQ--QLKNLAG---DHGWFGLGSRIIITSRDKQV--LK------T--GVDEMYEVEELNCR 333 (1085)
Q Consensus 272 ---~l~~kr~LlVLDdv~~~~--~~~~l~~---~~~~~~~gs~IiiTTR~~~v--~~------~--~~~~~~~l~~L~~~ 333 (1085)
...+++.++|+||++... .++.+.. ..........|++|....-. .. . .....+++++++.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 225788999999998753 3444432 11111223345666543211 00 0 22456789999999
Q ss_pred HHHHHHHHhhccCC--CCCCCHHHHHHHHHHHhcCCchHHHHHhhhh
Q 044535 334 EALQLFSLNAFKLN--HPTEDYMGLSNQVVHYAKGIPLALKVLGCFL 378 (1085)
Q Consensus 334 ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~glPLal~~~g~~L 378 (1085)
|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987653222 1122335778899999999999999988775
No 45
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.81 E-value=1.3e-07 Score=111.24 Aligned_cols=294 Identities=17% Similarity=0.151 Sum_probs=179.1
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
+|......|-|..-++.+... .+.|.+.|..++|.|||||+..+.. ....=..+.|+..-. .+.+......
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde---~dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDE---SDNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCC---ccCCHHHHHH
Confidence 455567788887666665542 3679999999999999999999988 444455688885432 2234444444
Q ss_pred HHHHHHhcCCCCC------------CCCCccchHHHHHhhc--CCceEEEEeCCCCH------HHHHHHhcCCCCCCCCC
Q 044535 246 ELFSRLLEDGDLS------------LGASGLGHTFMNTRLR--RKTVLIVLDDVENS------QQLKNLAGDHGWFGLGS 305 (1085)
Q Consensus 246 ~ll~~~~~~~~~~------------~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs 305 (1085)
.++..+....... ..+.......+..-+. .++..+||||..-. ..++.+....+ ++-
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCe
Confidence 4444443211000 0011111122222222 47899999997432 23566665544 688
Q ss_pred EEEEEeCChhhhhc----CCCeEEEee----cCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhh
Q 044535 306 RIIITSRDKQVLKT----GVDEMYEVE----ELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCF 377 (1085)
Q Consensus 306 ~IiiTTR~~~v~~~----~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~ 377 (1085)
..|||||..--... -.+...++. .|+.+|+.++|..... .+-...-++.+.+...|-+-|+..++=.
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa 236 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALA 236 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHH
Confidence 99999997743322 122334443 5899999999976541 1122344678999999999999999877
Q ss_pred hcCC-CHHHHHHHHHhhhcCCCchHH-HHHHhhcCCCCHhHHHHHhhhhcccCCCCHHHHHHHHhhCCCCcchhhHHHhh
Q 044535 378 LFGR-SKRDWESALNKLRKNPNMEIQ-NVLRITYDTLDDEEKAIFLDIACFFKGDNRDHVTTILDGCGFSTEIGISVLID 455 (1085)
Q Consensus 378 L~~~-~~~~w~~~l~~l~~~~~~~i~-~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~~~l~~~~~~~g~~~~~~i~~L~~ 455 (1085)
+++. +.+.-...+. .. ...|. -...--++.||+++|..++.+|++.. +. +.+...+.+. ..+...++.|.+
T Consensus 237 ~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~-~ng~amLe~L~~ 309 (894)
T COG2909 237 LRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGE-ENGQAMLEELER 309 (894)
T ss_pred ccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcC-CcHHHHHHHHHh
Confidence 7732 3322221111 11 11111 12333468999999999999998842 11 2222222221 123445888999
Q ss_pred ccceEEc----CCceeechHHHHHhceeeecc
Q 044535 456 KCLITVT----DDRLLMHDLLQEMGWGIVRQE 483 (1085)
Q Consensus 456 ~~Li~~~----~~~~~mHdli~~~~~~i~~~e 483 (1085)
++|+-+. +++|..|.++.+|-+.....+
T Consensus 310 ~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 310 RGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 9987753 678999999999998876654
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.81 E-value=4.5e-08 Score=105.77 Aligned_cols=163 Identities=21% Similarity=0.309 Sum_probs=103.9
Q ss_pred CccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHH
Q 044535 172 GLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRL 251 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~ 251 (1085)
+++|-+..+.++ +. ++.+.-..+||++|+||||||+.++......|...--+ ..++.++.+.+ ..
T Consensus 31 HLlg~~~~lrr~---v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-e~- 95 (436)
T COG2256 31 HLLGEGKPLRRA---VE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-EE- 95 (436)
T ss_pred hhhCCCchHHHH---Hh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-HH-
Confidence 444554444443 32 34566777999999999999999999887777532211 12333333222 11
Q ss_pred hcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCC--CHHHHHHHhcCCCCCCCCCEEEE--EeCChhhhhc----CCCe
Q 044535 252 LEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVE--NSQQLKNLAGDHGWFGLGSRIII--TSRDKQVLKT----GVDE 323 (1085)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~----~~~~ 323 (1085)
.-+....+++.+|++|.|. +..|-+.+++... .|.-|+| ||.++...-. ....
T Consensus 96 ----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~ 156 (436)
T COG2256 96 ----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRAR 156 (436)
T ss_pred ----------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhh
Confidence 1123345789999999994 4566777777654 5777776 6777654322 4568
Q ss_pred EEEeecCCHHHHHHHHHHhhccCCCCCC-----CHHHHHHHHHHHhcCCc
Q 044535 324 MYEVEELNCREALQLFSLNAFKLNHPTE-----DYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 324 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-----~~~~~~~~i~~~~~glP 368 (1085)
++++++|+.++-.+++.+.+......-. -.++...-++..+.|--
T Consensus 157 vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 157 VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 9999999999999999874332222111 22345667888887754
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.8e-10 Score=119.43 Aligned_cols=203 Identities=25% Similarity=0.248 Sum_probs=142.2
Q ss_pred ccCCCcccEEEccCCCCCCccC--CcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEE
Q 044535 678 IESLGKLVVLRLDNCRRLKNLP--SSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVL 755 (1085)
Q Consensus 678 i~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 755 (1085)
=+++.+|+...|.+|. ....+ .....+++++.|+|++|-.. .+..+..-...||+|+.|
T Consensus 117 Qsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~------------------nw~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFH------------------NWFPVLKIAEQLPSLENL 177 (505)
T ss_pred hhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHH------------------hHHHHHHHHHhcccchhc
Confidence 3578889999998864 33333 23456888888888875211 111223335678999999
Q ss_pred EccCCcccccccccc-cCCCCCcEEEeeCCCCCC-CcchhhcCCCCccEEEccCCC-CcccCccccCCCCCCEEEccCCC
Q 044535 756 RLQKCKRLKRVSSSI-CKLKSLEILYLFGCSKLE-GLPEILESMERLETLYLAGTP-IKELPSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 756 ~L~~~~~~~~l~~~l-~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~-i~~lp~~l~~l~~L~~L~L~~~~ 832 (1085)
+|+.|++.....+.. ..+++|+.|.|+.|.... .+...+..+|+|+.|+|..|. +..-.....-+..|++|+|++|+
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 999988754433222 357899999999998763 344556679999999999995 32222234456789999999998
Q ss_pred chhhhccCCc-hhhhcCCCCccEEecCCCCCCC--CCcc-----cCCCCCCCEEECCCCCCCcCC----CCCCCCCCEee
Q 044535 833 NILVFLTNLP-LALLSGLCSLTELHLNDCNLLE--LPSA-----LTCLSSLEILGLSGNIFESLN----LKPFSCLTHLN 900 (1085)
Q Consensus 833 ~l~~~l~~l~-~~~~~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~~L~~L~L~~n~l~~l~----~~~l~~L~~L~ 900 (1085)
. -.++ ......++.|..|+++.|.+.+ +|+. ...+++|+.|++..|++..++ +..+++|+.|.
T Consensus 258 l-----i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 258 L-----IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred c-----cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 3 2222 1246789999999999999985 4554 467899999999999997776 66677777777
Q ss_pred cccc
Q 044535 901 VSYC 904 (1085)
Q Consensus 901 l~~c 904 (1085)
+..+
T Consensus 333 ~~~n 336 (505)
T KOG3207|consen 333 ITLN 336 (505)
T ss_pred cccc
Confidence 6543
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=4.1e-09 Score=104.83 Aligned_cols=86 Identities=30% Similarity=0.474 Sum_probs=26.2
Q ss_pred CCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC--cccCCCCC
Q 044535 797 MERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP--SALTCLSS 874 (1085)
Q Consensus 797 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~ 874 (1085)
+.+|+.|++++|.|+.++ .+..+++|++|++++|. ++.+.......+++|++|++++|++.++. ..+..+++
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-----I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-----ISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS--------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-----CCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 445555555555555443 24445555555555555 44443322234555555555555555332 23445555
Q ss_pred CCEEECCCCCCCcC
Q 044535 875 LEILGLSGNIFESL 888 (1085)
Q Consensus 875 L~~L~L~~n~l~~l 888 (1085)
|+.|+|.+|.++..
T Consensus 115 L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 115 LRVLSLEGNPVCEK 128 (175)
T ss_dssp --EEE-TT-GGGGS
T ss_pred cceeeccCCcccch
Confidence 55555555555543
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.76 E-value=1.4e-09 Score=111.32 Aligned_cols=124 Identities=28% Similarity=0.328 Sum_probs=82.1
Q ss_pred CCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCc
Q 044535 773 LKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSL 852 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L 852 (1085)
.+.|++|+|++|.. ..+-++..-.|.++.|+++.|.|..+.. +..+++|+.|+|++|. ++.+.. +-..+-+.
T Consensus 283 Wq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-----Ls~~~G-wh~KLGNI 354 (490)
T KOG1259|consen 283 WQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-----LAECVG-WHLKLGNI 354 (490)
T ss_pred Hhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-----hHhhhh-hHhhhcCE
Confidence 34677777777543 3344555566777777777777776654 6677777777777776 333332 23456677
Q ss_pred cEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC----CCCCCCCCEeeccccc
Q 044535 853 TELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN----LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 853 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~ 905 (1085)
+.|.|+.|.+.++ +.++.+-+|..||+++|++..+. ++.+|+|+.|.|.+||
T Consensus 355 KtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 7777777766655 34666777777777777777654 7777777777777766
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=7e-10 Score=116.79 Aligned_cols=225 Identities=25% Similarity=0.300 Sum_probs=117.7
Q ss_pred CccEEecCCCccc-----cccccccCCCcccEEEccCCCCCC----ccCC-------cccCCCCccEEEecccCCCccCC
Q 044535 660 SITELDLGETAIE-----EVPPAIESLGKLVVLRLDNCRRLK----NLPS-------SICNLTSLTELALHGCSNITKFP 723 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~-------~l~~l~~L~~L~L~~~~~~~~~p 723 (1085)
+++++++|+|.+. .+.+.+.+.++|+..++++- ..+ .+|. .+..++.|++|+||+|-.-...+
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 4455555555543 23344556666666666652 111 1222 22334566666666653322221
Q ss_pred CCCCCccccCcccccccccCcccccCCCCCEEEccCCccccc-------------ccccccCCCCCcEEEeeCCCCCCC-
Q 044535 724 DISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKR-------------VSSSICKLKSLEILYLFGCSKLEG- 789 (1085)
Q Consensus 724 ~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~-------------l~~~l~~l~~L~~L~L~~~~~l~~- 789 (1085)
..+-.-+.++..|++|.|.+|.+-.. ...-+.+-+.|+++...+|..-..
T Consensus 110 ----------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 110 ----------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred ----------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence 12222244455555555555543211 011123445666666665533221
Q ss_pred ---cchhhcCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEccCCCchhhhccCCc----hhhhcCCCCccEEec
Q 044535 790 ---LPEILESMERLETLYLAGTPIK-----ELPSSIDHLPQLSLLSLENCKNILVFLTNLP----LALLSGLCSLTELHL 857 (1085)
Q Consensus 790 ---lp~~l~~l~~L~~L~L~~~~i~-----~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~----~~~~~~l~~L~~L~L 857 (1085)
+...+...+.|+.+.+..|.|. -+...+..+++|+.|+|.+|. ++.-. ...++.+++|++|++
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-----ft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-----FTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-----hhhHHHHHHHHHhcccchheeecc
Confidence 2344556667777777776664 122345667777777777776 22111 123456667777777
Q ss_pred CCCCCCC-----CCccc-CCCCCCCEEECCCCCCCcCC-------CCCCCCCCEeecccccc
Q 044535 858 NDCNLLE-----LPSAL-TCLSSLEILGLSGNIFESLN-------LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 858 s~n~l~~-----lp~~l-~~l~~L~~L~L~~n~l~~l~-------~~~l~~L~~L~l~~c~~ 906 (1085)
++|.+.+ +...+ ...|+|+.|.+.+|.++.-. +...+.|..|+|++|..
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7777663 22222 34677777777777776432 45567777777777653
No 51
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=8.4e-09 Score=102.63 Aligned_cols=105 Identities=29% Similarity=0.373 Sum_probs=42.5
Q ss_pred cCCCCccEEEccCCCCcccCcccc-CCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCccc-CCC
Q 044535 795 ESMERLETLYLAGTPIKELPSSID-HLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSAL-TCL 872 (1085)
Q Consensus 795 ~~l~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l 872 (1085)
.++.++++|+|.+|.|+.+. .++ .+.+|+.|+|++|. ++.++. +..++.|+.|++++|.++.+.+.+ ..+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-----I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-----ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS-------S--TT------TT--EEE--SS---S-CHHHHHH-
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCC-----CccccC--ccChhhhhhcccCCCCCCccccchHHhC
Confidence 34557899999999998775 455 68899999999999 777764 788999999999999999987655 468
Q ss_pred CCCCEEECCCCCCCcCC----CCCCCCCCEeeccccccc
Q 044535 873 SSLEILGLSGNIFESLN----LKPFSCLTHLNVSYCKRL 907 (1085)
Q Consensus 873 ~~L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~~L 907 (1085)
++|+.|++++|++.++. +..+++|+.|++.+||-.
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999999998875 677899999999998854
No 52
>PRK06893 DNA replication initiation factor; Validated
Probab=98.64 E-value=5.5e-07 Score=95.57 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=89.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
.+.+.|+|++|+|||+||+++++.+..+...+.|+.... . ...... +.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~----~---~~~~~~----------------------~~~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK----S---QYFSPA----------------------VLENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH----h---hhhhHH----------------------HHhhc
Confidence 367889999999999999999998766666667764210 0 000001 11111
Q ss_pred cCCceEEEEeCCCCH---HHHH-HHhcCCCC-CCCCCEEEEEeCCh----------hhhhc-CCCeEEEeecCCHHHHHH
Q 044535 274 RRKTVLIVLDDVENS---QQLK-NLAGDHGW-FGLGSRIIITSRDK----------QVLKT-GVDEMYEVEELNCREALQ 337 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~---~~~~-~l~~~~~~-~~~gs~IiiTTR~~----------~v~~~-~~~~~~~l~~L~~~ea~~ 337 (1085)
+ +.-+|||||++.. .+|+ .+...+.. ...|+.+||+|.+. .+... .....++++++++++.++
T Consensus 90 ~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 E-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred c-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 1 2348999999763 3333 22221111 12356665554433 33333 445688999999999999
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 338 LFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 338 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
++.+.+....- .-..++..-|++.+.|..-++..+
T Consensus 169 iL~~~a~~~~l--~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 169 VLQRNAYQRGI--ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHH
Confidence 99988864432 223456677777777665444433
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.56 E-value=2e-08 Score=106.02 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCCceEEecCCCCch-----hhhHhhhhccccceecccC
Q 044535 591 PENLVELDMHHSNLE-----HLWEEMQHALNLRRIDLSY 624 (1085)
Q Consensus 591 l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~ 624 (1085)
...+..|+|++|.+. .+.+.+.+.++|+..++++
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 345556666666553 2334455555666666654
No 54
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.53 E-value=7.6e-07 Score=103.39 Aligned_cols=176 Identities=21% Similarity=0.283 Sum_probs=107.0
Q ss_pred CCCCCccccchhHHH---HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHH
Q 044535 168 GALDGLIGIESRVEK---VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
...+++||.+..+.. +.+++..+ ..+.+.++|++|+||||+|+.+++.....|.. +... ..+...+
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~i- 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDL- 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHH-
Confidence 345678998887666 77777533 45678889999999999999999877554421 1111 0111111
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEE--eCChhhh--h
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIIT--SRDKQVL--K 318 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiT--TR~~~v~--~ 318 (1085)
++++.... .....+++.+|++|+++.. .+.+.+..... .|..++|. |.+.... .
T Consensus 78 r~ii~~~~-----------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIEEAR-----------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHHHHH-----------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 11111110 0111357889999999764 45566665543 35555553 4433211 1
Q ss_pred c--CCCeEEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcCCchHHHHH
Q 044535 319 T--GVDEMYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 319 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
. .....+++++++.++..+++.+.+....... .-..+..+.+++.++|.|..+..+
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 1 3347899999999999999987553211111 233466778999999998665544
No 55
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.52 E-value=1.7e-06 Score=102.68 Aligned_cols=244 Identities=14% Similarity=0.069 Sum_probs=127.1
Q ss_pred CCCCCccccchhHHHHHHhhcc---CCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-----Cc--ceEEEeehhhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI---GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-----FE--GCCFLENVREESAK 237 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~--~~~~~~~~~~~s~~ 237 (1085)
..++.++||+.++++|...|.. ++....++.|+|++|.|||+.++.|.+++... .+ .++++.+.. .
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----V 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----c
Confidence 4567899999999999888753 22334677899999999999999999866421 12 134553321 1
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh-c--CCceEEEEeCCCCHH--H---HHHHhcCCCCCCCCCEEEE
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL-R--RKTVLIVLDDVENSQ--Q---LKNLAGDHGWFGLGSRIII 309 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~--~kr~LlVLDdv~~~~--~---~~~l~~~~~~~~~gs~Iii 309 (1085)
.....+...+..++.+...............+...+ . +...+||||+|+... . +-.|..... ..+++|+|
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 233344444545553332111111111222222222 1 234589999997543 1 222222111 24566655
Q ss_pred --EeCChhh--------hhcCCCeEEEeecCCHHHHHHHHHHhhccCC-C-CCCCHHHHHHHHHHHhcCCchHHHHHhhh
Q 044535 310 --TSRDKQV--------LKTGVDEMYEVEELNCREALQLFSLNAFKLN-H-PTEDYMGLSNQVVHYAKGIPLALKVLGCF 377 (1085)
Q Consensus 310 --TTR~~~v--------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~-~~~~~~~~~~~i~~~~~glPLal~~~g~~ 377 (1085)
+|.+... ........+..++++.++-.+++..++-... . .++..+-+|+.++...|..-.||.++-.+
T Consensus 906 IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 2322111 1111223466799999999999998875321 1 11222223333333344455666655444
Q ss_pred hcC-----CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhh
Q 044535 378 LFG-----RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIA 424 (1085)
Q Consensus 378 L~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a 424 (1085)
... ...++-+.+..++... .+.-....||.+.|-.++.+.
T Consensus 986 gEikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 321 1334444444443221 122334578888776665444
No 56
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.50 E-value=1.2e-07 Score=103.29 Aligned_cols=258 Identities=21% Similarity=0.240 Sum_probs=169.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
..+.+.++|.|||||||++-.+.. +...|....+..+...+++..-+.......+ +-. ...-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~----gl~---~~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGAL----GLH---VQPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhc----ccc---cccchHHHHHHHHH
Confidence 458899999999999999999999 8889988877766656555443332222211 111 11111223456677
Q ss_pred hcCCceEEEEeCCCCHHH-HHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEeecCCHH-HHHHHHHHhhccCCC--
Q 044535 273 LRRKTVLIVLDDVENSQQ-LKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVEELNCR-EALQLFSLNAFKLNH-- 348 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~-- 348 (1085)
..++|.++|+||-.+... -..+...+....+.-.|+.|+|...... .+..+.++.|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhccce
Confidence 788999999999876543 2333333333345667888998654333 4566778888765 799998776532221
Q ss_pred -CCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHHHHHH----hhhcCC------CchHHHHHHhhcCCCCHhHH
Q 044535 349 -PTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWESALN----KLRKNP------NMEIQNVLRITYDTLDDEEK 417 (1085)
Q Consensus 349 -~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~----~l~~~~------~~~i~~~l~~sy~~L~~~~k 417 (1085)
-.........+|.+...|.|++|...++..+.....+....+. .++... .......+..||.-|...++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 1233445678999999999999999999887766544433333 233321 23356789999999999999
Q ss_pred HHHhhhhcccCCCCHHHHHHHHhhCCCC-------cchhhHHHhhccceEEc
Q 044535 418 AIFLDIACFFKGDNRDHVTTILDGCGFS-------TEIGISVLIDKCLITVT 462 (1085)
Q Consensus 418 ~~fl~~a~f~~~~~~~~l~~~~~~~g~~-------~~~~i~~L~~~~Li~~~ 462 (1085)
-.|-.++.|...+..+... +.+.|-. .-..+..+++++++...
T Consensus 243 ~~~~rLa~~~g~f~~~l~~--~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLAL--AVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred HHhcchhhhhhhhcccHHH--HHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9999999998887665322 2333321 22346667888887654
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.44 E-value=3.3e-06 Score=89.98 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=100.9
Q ss_pred CCCccc--cchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHH
Q 044535 170 LDGLIG--IESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEEL 247 (1085)
Q Consensus 170 ~~~~vG--r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~l 247 (1085)
.+.|++ .+..++++.+++.. ...+.+.|+|++|+|||+||+.++++........+|+.. ....... ..+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~-~~~~~~~------~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPL-AELAQAD------PEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeH-HHHHHhH------HHH
Confidence 345552 34466777777542 345678899999999999999999876655444555532 1111100 011
Q ss_pred HHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCChh-------
Q 044535 248 FSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ---Q-LKNLAGDHGW-FGLGSRIIITSRDKQ------- 315 (1085)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~~------- 315 (1085)
+ ..+. +.-+|||||++... . .+.+...+.. ...+.++|+||+...
T Consensus 85 ~----------------------~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 85 L----------------------EGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred H----------------------hhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 1 1111 22489999997543 1 2233222111 123458899887432
Q ss_pred --hhhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 316 --VLKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 316 --v~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
+... .....+++++++.++...++...+-.... .-..+..+.+++.+.|+|..+..+.
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 1111 22467899999999999998765532221 2233556777888888887776554
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.43 E-value=2.1e-06 Score=97.73 Aligned_cols=199 Identities=16% Similarity=0.120 Sum_probs=107.5
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-cc-eEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EG-CCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|...+.++|++..++.+.+++..+ ..+.+.++|++|+||||+|+++++.+.... .. .+++... ..... ....+.
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-~~~~~-~~~~~~ 86 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA-DFFDQ-GKKYLV 86 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh-hhhhc-chhhhh
Confidence 344578999999999999988643 344678999999999999999998765332 22 2333211 11000 000000
Q ss_pred HH-HHHHHhcCC-CCCCCCCccchHHHHHh-----hcCCceEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh-
Q 044535 245 EE-LFSRLLEDG-DLSLGASGLGHTFMNTR-----LRRKTVLIVLDDVENSQ--QLKNLAGDHGWFGLGSRIIITSRDK- 314 (1085)
Q Consensus 245 ~~-ll~~~~~~~-~~~~~~~~~~~~~l~~~-----l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~- 314 (1085)
.. ......+.. .......+.....++.. ....+-+||+||++... ....+...+......+++|+||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~ 166 (337)
T PRK12402 87 EDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPS 166 (337)
T ss_pred cCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChh
Confidence 00 000000000 00000000011111111 11344589999997542 2333433333334567888887543
Q ss_pred hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 315 QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 315 ~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
.+... .....+++.+++.++..+++...+-..+.. -..+..+.+++.++|.+-.+
T Consensus 167 ~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 167 KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred hCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 22222 344678899999999999988765433221 23456778888888876444
No 59
>PTZ00202 tuzin; Provisional
Probab=98.41 E-value=2e-05 Score=87.22 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=106.3
Q ss_pred HHHHHHHhhcccc------cccCCCCCccccchhHHHHHHhhccCC-CceEEEEEEecCCCcHHHHHHHHHHHHhccCcc
Q 044535 152 EKIVKDVLKKLNH------TSSGALDGLIGIESRVEKVESLLCIGL-VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEG 224 (1085)
Q Consensus 152 ~~i~~~i~~~l~~------~~~~~~~~~vGr~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~ 224 (1085)
+-.++...+..++ ..|.+...|+||+.++..+...|...+ ...+++.|.|++|+|||||++.+..... .
T Consensus 237 ~~Av~tL~~~~~~~~~~~~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~ 312 (550)
T PTZ00202 237 KVAVSTLTQPLNPRPSTLQSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M 312 (550)
T ss_pred HHHHHHhhcccCCCcccccCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c
Confidence 3344555554433 356778999999999999999996433 3456999999999999999999997654 2
Q ss_pred eEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh-----c-CCceEEEEeCC--CCHHH----HH
Q 044535 225 CCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL-----R-RKTVLIVLDDV--ENSQQ----LK 292 (1085)
Q Consensus 225 ~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVLDdv--~~~~~----~~ 292 (1085)
.+++.+.+ +..+++..++.++....... ..++...|.+.+ . +++.+||+-== .+... .-
T Consensus 313 ~qL~vNpr------g~eElLr~LL~ALGV~p~~~---k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v 383 (550)
T PTZ00202 313 PAVFVDVR------GTEDTLRSVVKALGVPNVEA---CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV 383 (550)
T ss_pred eEEEECCC------CHHHHHHHHHHHcCCCCccc---HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH
Confidence 35554442 45677778887776532111 112223333222 2 67777777421 22211 12
Q ss_pred HHhcCCCCCCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHH
Q 044535 293 NLAGDHGWFGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSL 341 (1085)
Q Consensus 293 ~l~~~~~~~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~ 341 (1085)
.+... ..-|+|++----+.+-.. ..-..|-++.++.++|.++-..
T Consensus 384 ~la~d----rr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 384 ALACD----RRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHHcc----chhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 22222 245778875443333221 2236789999999999988753
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=1e-05 Score=95.98 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=111.9
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc---------------------Ccce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ---------------------FEGC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 225 (1085)
|...+++||.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+... |...
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 3456789999999999999986442 24566799999999999999999865321 1111
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--QLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~ 303 (1085)
+.+.. +...++..+ ++++..... .-..++.-++|||+++... .++.|+..+.....
T Consensus 91 iEIDA----as~rgVDdI-ReLIe~a~~-----------------~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 91 VEMDA----ASNRGVDEM-AALLERAVY-----------------APVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPP 148 (830)
T ss_pred EEecc----cccccHHHH-HHHHHHHHh-----------------ccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCC
Confidence 11100 001111111 111111000 0012345588899998754 36777666555456
Q ss_pred CCEEEEEeCChhhhhc---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHH
Q 044535 304 GSRIIITSRDKQVLKT---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKV 373 (1085)
Q Consensus 304 gs~IiiTTR~~~v~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~ 373 (1085)
..++|+||++.+-... .-...+.++.++.++..+.+.+.+-..+. .-..+....|++.++|.. -|+..
T Consensus 149 ~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--AFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7888888887644332 44578999999999999998776533221 223456678888888854 45444
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.7e-08 Score=103.68 Aligned_cols=179 Identities=26% Similarity=0.323 Sum_probs=108.8
Q ss_pred CccccCccccccc--ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCc--chhhcCCCCccEE
Q 044535 728 DMKYLSLSETAIE--ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGL--PEILESMERLETL 803 (1085)
Q Consensus 728 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L 803 (1085)
.+++|+|+...|+ .+...+..+.+|+.|.|.++.....+...+..-.+|+.|+|++|+..... ...+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4555666666654 44455678889999999999888887777888889999999999887653 3456778888888
Q ss_pred EccCCCCcc--cCccccC-CCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC--CCcccCCCCCCCEE
Q 044535 804 YLAGTPIKE--LPSSIDH-LPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE--LPSALTCLSSLEIL 878 (1085)
Q Consensus 804 ~L~~~~i~~--lp~~l~~-l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L 878 (1085)
+|+.|.+.. +...+.+ -++|+.|+|++|..... ...+ ......+|+|.+||||+|.... ....
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~-~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~---------- 333 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ-KSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQE---------- 333 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh-hhHH-HHHHHhCCceeeeccccccccCchHHHH----------
Confidence 888887651 1111111 25677777777762211 0000 0112345555555555553321 1112
Q ss_pred ECCCCCCCcCCCCCCCCCCEeecccccccc--ccCCCCCCCCCCeEEEeCCCC
Q 044535 879 GLSGNIFESLNLKPFSCLTHLNVSYCKRLQ--SLQEFPSPLRLVNLQAHECIY 929 (1085)
Q Consensus 879 ~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~--~lp~l~~~~~L~~L~i~~c~~ 929 (1085)
+..|+.|++|.++.|-.+- .+-++.+.+.|.+|++.+|-+
T Consensus 334 -----------~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 334 -----------FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred -----------HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 4455666666666665431 122355556667777777754
No 62
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.1e-05 Score=91.78 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=109.2
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc---------------------ceE
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE---------------------GCC 226 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~ 226 (1085)
...++++|-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.+..... ...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~ 91 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLI 91 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceE
Confidence 446789999999999999886442 3467789999999999999999987642110 011
Q ss_pred EEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcCCCCCCCC
Q 044535 227 FLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--QLKNLAGDHGWFGLG 304 (1085)
Q Consensus 227 ~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 304 (1085)
++.. +....+.. .+++...+... -..+++-++|+|+++... .++.+...+....+.
T Consensus 92 ~~~~----~~~~~v~~-ir~i~~~~~~~-----------------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~ 149 (363)
T PRK14961 92 EIDA----ASRTKVEE-MREILDNIYYS-----------------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQH 149 (363)
T ss_pred Eecc----cccCCHHH-HHHHHHHHhcC-----------------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 1100 00001111 11111111000 012345689999998754 466676665554567
Q ss_pred CEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 305 SRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 305 s~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
.++|++|.+.. +... .....+++++++.++..+.+...+-..+. .-..+.+..|++.++|.|-.
T Consensus 150 ~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 150 IKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred eEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 77787776543 3322 34578999999999999888776543221 12235567889999998753
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=1.2e-05 Score=94.54 Aligned_cols=193 Identities=17% Similarity=0.073 Sum_probs=112.3
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc--cCcceEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN--QFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|...++++|-+..++.|..++..+. -...+.++|++|+||||+|+.+++.+.. .+...|+.... +.....+...
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s-c~~i~~~~h~-- 85 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES-CLAVRRGAHP-- 85 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh-hHHHhcCCCC--
Confidence 3456789999999999988886542 2456789999999999999999987642 23223333111 0000000000
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hh
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QV 316 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v 316 (1085)
-+..+....... .+. ...+.+. ..+++-++|+|+++.. ..++.+...+....+...+|++|... .+
T Consensus 86 --dv~el~~~~~~~---vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 86 --DVLEIDAASNNS---VED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred --ceEEecccccCC---HHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 000000000000 000 1111111 1245668999999754 44677766665444566666666543 33
Q ss_pred hhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 317 LKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 317 ~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
... .....+++.+++.++..+.+.+.+-..+.. -..+....|++.++|.+--+
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 222 445789999999999999998876443322 23456788999999988443
No 64
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=2.1e-06 Score=82.19 Aligned_cols=117 Identities=19% Similarity=0.235 Sum_probs=75.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
+++.|.|+.|+|||||+++++.... .-...+|+... .... ..... .+ ..+.+.+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~-~~~~----~~~~~----------------~~-~~~~~~~~~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD-DPRD----RRLAD----------------PD-LLEYFLELIK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC-CHHH----HHHhh----------------hh-hHHHHHHhhc
Confidence 6889999999999999999998765 22334444221 1100 00000 00 1122333333
Q ss_pred CCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc-------CCCeEEEeecCCHHH
Q 044535 275 RKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT-------GVDEMYEVEELNCRE 334 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~~~~l~~L~~~e 334 (1085)
.++.+|+||+|....+|......+...++..+||+|+........ +....+++.+|+..|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 477889999998888877766555444567899999997766632 334567999999876
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=98.31 E-value=5.5e-06 Score=92.85 Aligned_cols=180 Identities=16% Similarity=0.214 Sum_probs=106.5
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh-ccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA-NQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
|...++++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+++.+. ..|...+.-.+ .+...+...+ +
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~v-r 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDVV-R 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHHH-H
Confidence 445677999999888888887543 344567999999999999999998763 33432221111 1222232222 2
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--C
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--G 320 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~ 320 (1085)
..+....... ... -.++.-++|||+++.. .....+..........+++|+++... .+... .
T Consensus 83 ~~i~~~~~~~-~~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 83 NKIKMFAQKK-VTL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHHHHHHhcc-ccC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 2222211110 000 0134668999999764 23344444333345667888777543 22221 2
Q ss_pred CCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 321 VDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 321 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
....++++++++++..+.+...+-..+.. -..+....+++.++|-.
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~--i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVP--YVPEGLEAIIFTADGDM 194 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 34678999999999998888766433221 12355678888888765
No 66
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.31 E-value=3.2e-06 Score=96.62 Aligned_cols=173 Identities=16% Similarity=0.301 Sum_probs=100.1
Q ss_pred CCCCccccchhHHHHHHhhccC-----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCIG-----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+++.|++..+++|.+.+... -...+-+.++|++|+|||++|+++++.....|-... .
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-----~----- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-----G----- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----h-----
Confidence 3467899999999988766321 122456889999999999999999998765542111 0
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGWF 301 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 301 (1085)
..+..... +.. .......+...-...+.+|+||+++... .+..+......+
T Consensus 190 ---~~l~~~~~----g~~------~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 ---SELVRKYI----GEG------ARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred ---HHHHHHhh----hHH------HHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 00111100 000 0000111111123467899999987531 123333222211
Q ss_pred --CCCCEEEEEeCChhhhh-----c-CCCeEEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcCCc
Q 044535 302 --GLGSRIIITSRDKQVLK-----T-GVDEMYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 302 --~~gs~IiiTTR~~~v~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glP 368 (1085)
..+.+||.||....... . ..+..++++..+.++..++|..++.+..... .. ...+++.+.|..
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 23667888887543222 1 2356899999999999999998875544332 12 345666666653
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=98.31 E-value=1.8e-05 Score=93.82 Aligned_cols=179 Identities=19% Similarity=0.196 Sum_probs=107.4
Q ss_pred ccCCCCCccccchhHHHHHHhhccCC--CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGL--VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
.|...++++|.+..++++..|+..-. ...+.+.|+|++|+||||+|+++++.+. |+. +.+ +. +...... .
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-na---sd~r~~~-~ 80 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NA---SDQRTAD-V 80 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cc---cccccHH-H
Confidence 34456779999999999999986421 2267889999999999999999999763 221 122 11 2111111 2
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH------HHHHHhcCCCCCCCCCEEEEEeCChh-h
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ------QLKNLAGDHGWFGLGSRIIITSRDKQ-V 316 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~IiiTTR~~~-v 316 (1085)
...+........ .....++-+||+|+++... .+..+..... ..+..||+|+.+.. .
T Consensus 81 i~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~ 143 (482)
T PRK04195 81 IERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDP 143 (482)
T ss_pred HHHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCcccc
Confidence 222222211110 0011367799999997642 2444443332 23455666664432 1
Q ss_pred hh-c--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 317 LK-T--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 317 ~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
.. . .....+++++++.++....+...+...+.. -..+....|++.++|-.-.+
T Consensus 144 ~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 144 SLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSA 199 (482)
T ss_pred chhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 11 1 345678999999999998887766433322 22466788888888865443
No 68
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=5.2e-05 Score=85.57 Aligned_cols=200 Identities=14% Similarity=0.042 Sum_probs=111.2
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc-c-CcceEEEeehhhhhhhhcHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN-Q-FEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~-F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
.|...++++|-+...+.+.+.+..+. -...+.++|+.|+||||+|..+++.+-. . ......-....... ..+....
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence 34556789999999999998886542 2456889999999999999999986521 1 11000000000000 0000000
Q ss_pred HHHHHHHHhcCCCCC-C----CC------CccchHHHH---Hhhc-----CCceEEEEeCCCCH--HHHHHHhcCCCCCC
Q 044535 244 QEELFSRLLEDGDLS-L----GA------SGLGHTFMN---TRLR-----RKTVLIVLDDVENS--QQLKNLAGDHGWFG 302 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~-~----~~------~~~~~~~l~---~~l~-----~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 302 (1085)
.+.+.... .++.. + .. ..-.++.++ +.+. +.+.++|+|+++.. .....|+..+....
T Consensus 92 c~~i~~~~--HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 92 ARRIAAGA--HGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHccC--CCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 01110000 00000 0 00 000122222 2222 45678999999654 44555555544434
Q ss_pred CCCEEEEEeCChhhh-hc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 303 LGSRIIITSRDKQVL-KT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 303 ~gs~IiiTTR~~~v~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
+++.+|++|.+.+-. .. .....+.+.+++.++..+++...... .. .+....++..++|.|+....+.
T Consensus 170 ~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 170 ARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 567777777765433 22 45678999999999999999765411 11 1222678999999998665553
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=2.6e-05 Score=88.02 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=106.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEeehhhhhhhhcHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
|...++++|++..++.+..++..+ ..+.+.++|.+|+||||+|+.+++.+... +.. .++.. ..+...+...+.
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~--~~~~~~~~~~~~- 86 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLEL--NASDERGIDVIR- 86 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEe--ccccccchHHHH-
Confidence 344567999999999999988643 33457899999999999999999876432 221 12211 001111111111
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--C
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--G 320 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~ 320 (1085)
+.+....... .. ....+-++|+|+++.. ...+.+........+.+++|+++... .+... .
T Consensus 87 ~~i~~~~~~~--~~-------------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 87 NKIKEFARTA--PV-------------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHhcC--CC-------------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 1111111100 00 0123568999998754 23444544444444567788777432 22221 2
Q ss_pred CCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 321 VDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 321 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
....+++++++.++....+...+-..+. .-..+....+++.++|.+--
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGI--EITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 3456899999999999988877643332 12245677888999988754
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=94.50 Aligned_cols=178 Identities=17% Similarity=0.134 Sum_probs=109.9
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC---------------------cce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF---------------------EGC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~ 225 (1085)
|...+++||.+...+.|.+++..+. -.+.+.++|+.|+||||+|+.+++.+.... ...
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3456789999999999999987442 246778999999999999999998653211 111
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
+.+.. +...++..+ ++++.... ..-..+++-++|+|+|+.. ...+.++..+.....
T Consensus 90 iEIDA----As~~~VddI-Reli~~~~-----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 90 IEIDA----ASRTKVEDT-RELLDNVP-----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred EEecc----cccCCHHHH-HHHHHHHh-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11100 000111111 11111100 0011245668999999765 346666655554446
Q ss_pred CCEEEEEeCChhhhh-c--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 304 GSRIIITSRDKQVLK-T--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 304 gs~IiiTTR~~~v~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
+.++|++|.+..-.. . .....+++.+++.++..+.+...+-..+. .-..+....|++.++|-+-
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLR 214 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 678888887643222 1 44578999999999999988776643321 2234556788889988763
No 71
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.27 E-value=1.1e-06 Score=90.29 Aligned_cols=50 Identities=30% Similarity=0.464 Sum_probs=35.6
Q ss_pred CccccchhHHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 172 GLIGIESRVEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
.||||+++++++...+. ......+.+.|+|++|+|||+|+++++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999994 233457999999999999999999999988776
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=6.8e-06 Score=80.74 Aligned_cols=123 Identities=19% Similarity=0.220 Sum_probs=69.9
Q ss_pred cccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhc
Q 044535 174 IGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLE 253 (1085)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~ 253 (1085)
+|++..+..+...+... ..+.+.|+|++|+||||+|+++++.+...-..++++.. ................
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA-SDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh-hhhhhhhHHHHHhhhh------
Confidence 47888888888887543 34678899999999999999999987543333444432 1111110000000000
Q ss_pred CCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH-----HHHHHHhcCCCCC---CCCCEEEEEeCChh
Q 044535 254 DGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS-----QQLKNLAGDHGWF---GLGSRIIITSRDKQ 315 (1085)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gs~IiiTTR~~~ 315 (1085)
............++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001111223456789999999864 2233333333221 36788888888653
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.3e-05 Score=97.14 Aligned_cols=185 Identities=15% Similarity=0.119 Sum_probs=112.4
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-C-cc-eEEEeeh-h-----------
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-F-EG-CCFLENV-R----------- 232 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~-~~~~~~~-~----------- 232 (1085)
.....+||-+..++.|.+++..+. =...+.++|+.|+||||+|+.+++.+... . .. -|..... .
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 446789999999999999886432 23556899999999999999999876432 1 00 0110000 0
Q ss_pred --hhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 044535 233 --EESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRII 308 (1085)
Q Consensus 233 --~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 308 (1085)
......++..+ +++...+. ..-..+++-++|||+++.. ...+.|+..+.......++|
T Consensus 92 EidAas~~kVDdI-ReLie~v~-----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 92 EVDAASRTKVDDT-RELLDNVQ-----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EeccccccCHHHH-HHHHHHHH-----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 00000111111 11111110 0112356779999999764 55777776665555667777
Q ss_pred EEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch-HHHH
Q 044535 309 ITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL-ALKV 373 (1085)
Q Consensus 309 iTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~ 373 (1085)
++|.+.. +... .....|++++++.++..+++...+-..+ ..-..+....|++.++|.|- |+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7666543 3322 3457899999999999999977653321 12234567889999999884 4433
No 74
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.5e-05 Score=89.21 Aligned_cols=176 Identities=16% Similarity=0.199 Sum_probs=110.6
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh------ccCcceEEEeehhhhhhhhcHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA------NQFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
++++|-+..++.+...+..+ .-.+...++|+.|+||||+|+.++..+- .+.+...|.. .. .....+.++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~--~~~i~v~~i- 78 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN--KKSIGVDDI- 78 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc--CCCCCHHHH-
Confidence 56889888889999988643 2346778999999999999999998652 2223223321 00 111122221
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCC--CCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhh-c--
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDV--ENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLK-T-- 319 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~-- 319 (1085)
+++...+...+ ..+++-++|+|++ .+...++.+...+....+++.+|++|.+.+... .
T Consensus 79 r~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 12222211111 1234445666666 455668888877776678999999987664332 1
Q ss_pred CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 320 GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 320 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
.....+++.+++.++....+.....+ ...+.++.++.+++|.|..+...
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34578999999999998888654311 11234668899999998655443
No 75
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.26 E-value=5.4e-06 Score=84.27 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=93.9
Q ss_pred cCCCCCccccchhHHHHHHhhcc---CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCI---GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|...++|||-+.-+..+.-++.. ..+...-+.+||++|+||||||.-+++.....|.. .... ......++..+
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg~-~i~k~~dl~~i 95 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSGP-AIEKAGDLAAI 95 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EECC-C--SCHHHHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccch-hhhhHHHHHHH
Confidence 44568999999999887665542 23456778899999999999999999988777641 2110 01111111111
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCC--------CCCC---------
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGW--------FGLG--------- 304 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~--------~~~g--------- 304 (1085)
+ ..++ ++-+|.+|.+... .+-+.|.+.... .+++
T Consensus 96 ----l----------------------~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 96 ----L----------------------TNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ----H----------------------HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ----H----------------------HhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 1122 3457777999654 333333332211 1222
Q ss_pred --CEEEEEeCChhhhhc---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 305 --SRIIITSRDKQVLKT---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 305 --s~IiiTTR~~~v~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
+-|=-|||...+... ...-..+++..+.+|-.+...+.+-.-+. +-..+.+.+|++.+.|-|--
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHH
Confidence 233347776544433 33445689999999999999877643332 23457789999999999943
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.4e-08 Score=100.79 Aligned_cols=182 Identities=21% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCceEEecCCCCch--hhhHhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcccccccCCCCCCccEEecCC
Q 044535 592 ENLVELDMHHSNLE--HLWEEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGE 668 (1085)
Q Consensus 592 ~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~ 668 (1085)
+.|++|||+++.|+ ++...++.+.+|+.|.|.++.....+. .+.+-.+|+.|+++.|+.+..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--------------- 249 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--------------- 249 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch---------------
Confidence 45889999999887 666668889999999998876555444 377778888888888765421
Q ss_pred CccccccccccCCCcccEEEccCCCCCCccCCcc-c-CCCCccEEEecccCCCccCCCCCCCccccCcccccccccCccc
Q 044535 669 TAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSI-C-NLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSV 746 (1085)
Q Consensus 669 ~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l-~-~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l 746 (1085)
..+.--+.+++.|..|+|+.|.........+ . --++|+.|+|+||... +..+ .+..-.
T Consensus 250 ---n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--------------l~~s---h~~tL~ 309 (419)
T KOG2120|consen 250 ---NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--------------LQKS---HLSTLV 309 (419)
T ss_pred ---hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--------------hhhh---HHHHHH
Confidence 0111224566777777777765443321111 1 1245555666654321 1111 111223
Q ss_pred ccCCCCCEEEccCCccccc-ccccccCCCCCcEEEeeCCCCCCC-cchhhcCCCCccEEEccCC
Q 044535 747 ECLTELTVLRLQKCKRLKR-VSSSICKLKSLEILYLFGCSKLEG-LPEILESMERLETLYLAGT 808 (1085)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~-l~~~l~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~L~~~ 808 (1085)
..+++|..|+|++|..+.. ....+..++.|++|.++.|-.+.. .--.+..+|+|.+|++.++
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 4567777777777655432 223355667777777776654311 0112344455555555443
No 77
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2e-05 Score=92.72 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=109.1
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc---------------------CcceE
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ---------------------FEGCC 226 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~~ 226 (1085)
...+++||-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+... |...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 45678999999999999988643 234567799999999999999999865321 11111
Q ss_pred EEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCC
Q 044535 227 FLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLG 304 (1085)
Q Consensus 227 ~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 304 (1085)
.+.. ....++..+ ++++..+.. .-..+++-++|+|+++.. ...+.|+..+......
T Consensus 92 eida----as~~gvd~i-r~ii~~~~~-----------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 92 EIDA----ASRTGVEET-KEILDNIQY-----------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred Eeec----ccccCHHHH-HHHHHHHHh-----------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 1110 001111111 111111100 012346679999999754 4466676666544556
Q ss_pred CEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHH
Q 044535 305 SRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVL 374 (1085)
Q Consensus 305 s~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 374 (1085)
+.+|++|.+. .+... .....+++++++.++..+.+...+-..+ .....+....|++.++|-+ -|+..+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 7677555543 33322 3457899999999998888876543222 1223445677888888865 344443
No 78
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.23 E-value=8.6e-06 Score=86.36 Aligned_cols=145 Identities=20% Similarity=0.327 Sum_probs=91.4
Q ss_pred CCCccccchhHHH---HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 170 LDGLIGIESRVEK---VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
.++.||.+..+.+ |.+++ +.+..+-+.+||++|+||||||+.+...-+.+- ..|+.-....+...++..+.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHH
Confidence 3455555544433 22333 245677888999999999999999998654432 3455433222222333333322
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCC--CHHHHHHHhcCCCCCCCCCEEEE--EeCChhhhhc---
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVE--NSQQLKNLAGDHGWFGLGSRIII--TSRDKQVLKT--- 319 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~--~~~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~--- 319 (1085)
. .. ...+.++|..|.+|.|. +..|-+.+++.. ..|.-++| ||.++...-.
T Consensus 213 a----q~----------------~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 213 A----QN----------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred H----HH----------------HHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHH
Confidence 1 11 12356789999999994 455566666554 36777776 7777754322
Q ss_pred -CCCeEEEeecCCHHHHHHHHHH
Q 044535 320 -GVDEMYEVEELNCREALQLFSL 341 (1085)
Q Consensus 320 -~~~~~~~l~~L~~~ea~~Lf~~ 341 (1085)
....++.++.|..++-..++.+
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHH
Confidence 4567899999999999998876
No 79
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.22 E-value=4.6e-06 Score=93.02 Aligned_cols=134 Identities=25% Similarity=0.408 Sum_probs=70.6
Q ss_pred CCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc---ccCccccCCCCCCEEE
Q 044535 751 ELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK---ELPSSIDHLPQLSLLS 827 (1085)
Q Consensus 751 ~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~ 827 (1085)
+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++.++... .+|. +|+.|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~ 138 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSLS 138 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccccCcc------hHhhee
Confidence 56777777766666666544 24677777777765555543 4566666655433 3332 455666
Q ss_pred ccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcC--CCCCC-CCCCEeecccc
Q 044535 828 LENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESL--NLKPF-SCLTHLNVSYC 904 (1085)
Q Consensus 828 L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l--~~~~l-~~L~~L~l~~c 904 (1085)
+.++... ....++. .-.++|+.|++++|....+|..+. .+|+.|.++.+....+ +...+ +++ .|.+.+|
T Consensus 139 I~~~n~~--~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 139 INSYNPE--NQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ccccccc--ccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEEecccccccccCccccccccc-Eechhhh
Confidence 5433200 0011110 011467777777777666555443 4677777766543332 22223 234 6666665
Q ss_pred cc
Q 044535 905 KR 906 (1085)
Q Consensus 905 ~~ 906 (1085)
-+
T Consensus 211 lk 212 (426)
T PRK15386 211 VL 212 (426)
T ss_pred cc
Confidence 33
No 80
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.2e-05 Score=94.14 Aligned_cols=198 Identities=13% Similarity=0.071 Sum_probs=110.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc-ceEEEeehhhhhhhhcHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE-GCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
|...+++||-+..++.|.+++..+. -.+.+.++|..|+||||+|+.+++.+-..-. ..--+. +...+......
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~-----~~PCG~C~sC~ 85 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT-----AQPCGQCRACT 85 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC-----CCCCcccHHHH
Confidence 3456789999999999999986442 2456789999999999999999986632100 000000 00000000000
Q ss_pred HHHH----HHhcCCCCCCCCCccchHHHHHh----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 044535 246 ELFS----RLLEDGDLSLGASGLGHTFMNTR----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK- 314 (1085)
Q Consensus 246 ~ll~----~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~- 314 (1085)
.+.. .+..-+.......++..+.+... ..++.-++|||+++.. ...+.|+..+.....+.++|++|.+.
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 0000 00000000000011111111111 1345668999999765 45777777666555667776666544
Q ss_pred hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 315 QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 315 ~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
.+... .....|.++.++.++..+.+.+.+-..+. ....+..+.|++.++|.|....
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 33332 34578999999999999988766532221 1223456788999999885433
No 81
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.21 E-value=9.3e-07 Score=72.14 Aligned_cols=58 Identities=38% Similarity=0.575 Sum_probs=28.4
Q ss_pred CccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCC
Q 044535 799 RLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCN 861 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~ 861 (1085)
+|++|++++|.++.+|. ++..+++|++|+|++|. +..+++..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-----l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-----LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-----ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-----cCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554442 34445555555555444 444444444444555555544443
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.3e-05 Score=91.38 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=107.8
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc----Cc-----------------ce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ----FE-----------------GC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 225 (1085)
|...+++||.+.....|...+..+. -.+.+.++|++|+||||+|+.+++.+... +. ..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3456789999988888888776432 23567899999999999999999865321 10 01
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
..+.. +...++..+. ++...... ....+++-++|+|+++.. .+.+.+...+.....
T Consensus 89 ~el~a----a~~~gid~iR-~i~~~~~~-----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDA----ASNRGIDEIR-KIRDAVGY-----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeC----cccCCHHHHH-HHHHHHhh-----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 11100 0011111111 11111000 012245679999999765 345666655543334
Q ss_pred CCEEEEEeCC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC-CchHHHHHhh
Q 044535 304 GSRIIITSRD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKG-IPLALKVLGC 376 (1085)
Q Consensus 304 gs~IiiTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~g~ 376 (1085)
...+|++|.+ ..+... .....+++.+++.++....+.+.+...+. .-..+....|++.++| .+.|+..+-.
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555545543 333332 45578999999999998888876643221 1223556778887765 5666666644
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=8.5e-07 Score=72.38 Aligned_cols=60 Identities=40% Similarity=0.566 Sum_probs=44.9
Q ss_pred CCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCC
Q 044535 821 PQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIF 885 (1085)
Q Consensus 821 ~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l 885 (1085)
|+|++|++++|. +..+|...+.++++|+.|++++|.+..++ ..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~-----l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-----LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-----ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-----CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467788888887 77777777777888888888888777765 3567777777777777754
No 84
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=3.1e-05 Score=88.15 Aligned_cols=177 Identities=14% Similarity=0.088 Sum_probs=106.2
Q ss_pred CCCccccchhHHHHHHhhccCCC--------ceEEEEEEecCCCcHHHHHHHHHHHHhccC-------------------
Q 044535 170 LDGLIGIESRVEKVESLLCIGLV--------DVHIVGIWGMGGIGKTTIARAIFDRIANQF------------------- 222 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------------------- 222 (1085)
.+.++|-+..++.|.+++..+.. -.+.+.++|+.|+||||+|+.++..+-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35688988888889888875431 246788999999999999999988653221
Q ss_pred -cceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCC
Q 044535 223 -EGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHG 299 (1085)
Q Consensus 223 -~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~ 299 (1085)
+...++... .....+.++ +++....... -..+++-++|+|+++.. .....+...+.
T Consensus 84 hpD~~~i~~~---~~~i~i~~i-R~l~~~~~~~-----------------p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 84 HPDVRVVAPE---GLSIGVDEV-RELVTIAARR-----------------PSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCCEEEeccc---cccCCHHHH-HHHHHHHHhC-----------------cccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 111122100 000111111 1111111100 01234557888999764 33455655554
Q ss_pred CCCCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 300 WFGLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 300 ~~~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
...++..+|++|.+. .+... .....+.+++++.++..+.+.... + ...+.+..++..++|.|.....+
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 445677777777764 33322 445789999999999998886432 1 11345678899999999755444
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.19 E-value=2.4e-07 Score=107.96 Aligned_cols=124 Identities=35% Similarity=0.416 Sum_probs=69.3
Q ss_pred CCCCcEEEeeCCCCCCCcc-hhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCC-
Q 044535 773 LKSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLC- 850 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~- 850 (1085)
+++|+.+++++|.....-+ . ...+.+|+.+.+.+|.+..+. ++..+..+..+++..|. +..+.. +..+.
T Consensus 161 l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-----i~~~~~--l~~~~~ 231 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-----ISKLEG--LNELVM 231 (414)
T ss_pred chhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-----ceeccC--cccchh
Confidence 4445555555544332221 1 345566666666666665432 22233333444555554 222221 12222
Q ss_pred -CccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccccc
Q 044535 851 -SLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 851 -~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~c~ 905 (1085)
+|+.+++++|.+..++..+..+..+..|++.+|.+.... +..++.+..+....++
T Consensus 232 ~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 232 LHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNK 288 (414)
T ss_pred HHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcch
Confidence 377888888888777667777888888888888877765 5556666665555544
No 86
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.19 E-value=7.2e-06 Score=78.96 Aligned_cols=113 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc-----CcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ-----FEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTF 268 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 268 (1085)
.+.+.|+|.+|+|||++++.+++..... -..++|+.. ........+..+++..+...... ..........
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC----PSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH----HHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe----CCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 4688999999999999999999876543 234455532 22336777788888777665422 1223334455
Q ss_pred HHHhhcCC-ceEEEEeCCCCH---HHHHHHhcCCCCCCCCCEEEEEeCC
Q 044535 269 MNTRLRRK-TVLIVLDDVENS---QQLKNLAGDHGWFGLGSRIIITSRD 313 (1085)
Q Consensus 269 l~~~l~~k-r~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~ 313 (1085)
+.+.+.+. ..+||+|+++.. ..++.+..... ..+.+||+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 66666544 459999999765 33555544333 567788888775
No 87
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=2.1e-05 Score=96.03 Aligned_cols=170 Identities=21% Similarity=0.270 Sum_probs=100.5
Q ss_pred cCCCCCccccchhHH---HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRVE---KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|...++++|.+..+. .+.+++.. +....+.++|++|+||||||+.+++.....|. .+..+ ..++..+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di 93 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL 93 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH
Confidence 344567899988774 45566643 34556789999999999999999988765552 12111 0111111
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHh--hcCCceEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEE--eCChh--
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTR--LRRKTVLIVLDDVEN--SQQLKNLAGDHGWFGLGSRIIIT--SRDKQ-- 315 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiT--TR~~~-- 315 (1085)
++.+.. ..+. ..+++.+||||||+. ..+.+.+..... .|+.++|+ |.+..
T Consensus 94 -r~~i~~------------------a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 94 -RAEVDR------------------AKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFE 151 (725)
T ss_pred -HHHHHH------------------HHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhh
Confidence 111111 1111 124677999999964 455666665433 35555553 34432
Q ss_pred hhhc--CCCeEEEeecCCHHHHHHHHHHhhccC-----CCCCCCHHHHHHHHHHHhcCCc
Q 044535 316 VLKT--GVDEMYEVEELNCREALQLFSLNAFKL-----NHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 316 v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~-----~~~~~~~~~~~~~i~~~~~glP 368 (1085)
+... .....+.+++++.++...++.+.+-.. .....-..+....|++.+.|.-
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 1111 234679999999999999998765310 1112223456677888888764
No 88
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=2.5e-06 Score=104.19 Aligned_cols=106 Identities=25% Similarity=0.335 Sum_probs=53.7
Q ss_pred CCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc-ccCccccCCCCCCEEEccC
Q 044535 752 LTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK-ELPSSIDHLPQLSLLSLEN 830 (1085)
Q Consensus 752 L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~ 830 (1085)
+..|+|++|.+.+.+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|.++ .+|..+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 444555555555555555555555555555555554555555555555555555555554 4555555555555555555
Q ss_pred CCchhhhccCCchhhhcCCCCccEEecCCCC
Q 044535 831 CKNILVFLTNLPLALLSGLCSLTELHLNDCN 861 (1085)
Q Consensus 831 ~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~ 861 (1085)
|. +...+|......+.++..+++.+|.
T Consensus 500 N~----l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NS----LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred Cc----ccccCChHHhhccccCceEEecCCc
Confidence 54 1223333222222345556666554
No 89
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2.9e-05 Score=90.85 Aligned_cols=181 Identities=16% Similarity=0.126 Sum_probs=108.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc-------ceEEEeeh-hhh----
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE-------GCCFLENV-REE---- 234 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~-~~~---- 234 (1085)
|....++||-+..+..+...+..+. -.+.+.++|+.|+||||+|+.+++.+-..-. ..|..... ...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 4456789999999999988775432 2467889999999999999999986632110 00111000 000
Q ss_pred ---------hhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 235 ---------SAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 235 ---------s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
....++..+. +++.... ..-..+++-++|+|+++.. ..++.+...+....+
T Consensus 96 h~Dv~eidaas~~~vd~Ir-~iie~a~-----------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIR-RIIESAE-----------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred CCcEEEeeccCCCCHHHHH-HHHHHHH-----------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 0001111111 1111100 0012346678999999874 447777766554455
Q ss_pred CCEEEEEe-CChhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 304 GSRIIITS-RDKQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 304 gs~IiiTT-R~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
.+.+|++| +...+... .....+++.+++.++..+.+...+-..+.. -..+....|++.++|.+
T Consensus 158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSA 223 (507)
T ss_pred CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCH
Confidence 66666544 44444443 445679999999999999998877443321 22345677888998876
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=8.2e-08 Score=103.58 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=48.0
Q ss_pred cCCCCCEEEccCCccccccc--ccccCCCCCcEEEeeCCCCCCCc--chhhcCCCCccEEEccCCCCc---ccCccccCC
Q 044535 748 CLTELTVLRLQKCKRLKRVS--SSICKLKSLEILYLFGCSKLEGL--PEILESMERLETLYLAGTPIK---ELPSSIDHL 820 (1085)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~l~--~~l~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l 820 (1085)
.+..|+.|..++|...+..+ .-..+.++|+.|-+++|...... ...-.+++.|+.|++..+... ++-+.-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 45667777777776543322 11234567777777777654322 122235666777777666533 233333456
Q ss_pred CCCCEEEccCCC
Q 044535 821 PQLSLLSLENCK 832 (1085)
Q Consensus 821 ~~L~~L~L~~~~ 832 (1085)
+.|+.|.|++|.
T Consensus 372 ~~lr~lslshce 383 (483)
T KOG4341|consen 372 PRLRVLSLSHCE 383 (483)
T ss_pred chhccCChhhhh
Confidence 677777777666
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=2.5e-05 Score=83.21 Aligned_cols=173 Identities=16% Similarity=0.212 Sum_probs=95.2
Q ss_pred CCCCcc-ccchhH-HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 169 ALDGLI-GIESRV-EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 169 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
..+.|+ |..... ..+.++.. .....+.+.|+|..|+|||+||+++++.....-....++... ... ..
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~-~~~---------~~ 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA-SPL---------LA 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH-HhH---------HH
Confidence 345555 554443 44444443 223346788999999999999999998764332234444321 100 00
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCC-CCCCC-EEEEEeCChhhhh----
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGW-FGLGS-RIIITSRDKQVLK---- 318 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~-~~~gs-~IiiTTR~~~v~~---- 318 (1085)
+ . .....-+||+||++.. .+.+.+...... ...+. .||+|++......
T Consensus 85 ~-----------------------~-~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~ 140 (227)
T PRK08903 85 F-----------------------D-FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRE 140 (227)
T ss_pred H-----------------------h-hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCH
Confidence 0 0 0112347889999653 222223222211 01344 3666666432111
Q ss_pred ----c-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhh
Q 044535 319 ----T-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFL 378 (1085)
Q Consensus 319 ----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L 378 (1085)
. .....++++++++++-.+++.+.+-... ..-..+....+++...|++..+..+-..+
T Consensus 141 ~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 141 DLRTRLGWGLVYELKPLSDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 2246889999999887777765432222 12234567778888889988877665443
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.16 E-value=6.1e-05 Score=86.35 Aligned_cols=183 Identities=16% Similarity=0.120 Sum_probs=111.0
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc----Cc-----------------ce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ----FE-----------------GC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~-----------------~~ 225 (1085)
|...+.++|.+..++.+.+++..+. -.+.+.++|++|+||||+|+.++..+... +. ..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3445778999999999999886432 24577899999999999999999876421 11 01
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
.++... ...... ..+++...+... -..+++-++|+|+++.. ...+.+...+....+
T Consensus 89 ~~~~~~----~~~~~~-~~~~l~~~~~~~-----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~ 146 (355)
T TIGR02397 89 IEIDAA----SNNGVD-DIREILDNVKYA-----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE 146 (355)
T ss_pred EEeecc----ccCCHH-HHHHHHHHHhcC-----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc
Confidence 111100 000100 111111111100 01234558889998654 445666655544445
Q ss_pred CCEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 304 GSRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 304 gs~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
.+.+|++|.+.. +... .....+++++++.++..+.+...+-..+.. -..+.+..+++.++|.|..+...
T Consensus 147 ~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 147 HVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred ceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 677777776544 2322 344678999999999999988766433221 12356778899999988655544
No 93
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=4.9e-06 Score=101.63 Aligned_cols=105 Identities=23% Similarity=0.294 Sum_probs=77.4
Q ss_pred CCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc-ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCcc
Q 044535 775 SLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK-ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLT 853 (1085)
Q Consensus 775 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~ 853 (1085)
.++.|+|++|.....+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|. +....+..++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-----lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-----FNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-----CCCCCchHHhcCCCCC
Confidence 3677778777777777777888888888888888876 677777888888888888887 5544444677788888
Q ss_pred EEecCCCCCC-CCCcccCCC-CCCCEEECCCCC
Q 044535 854 ELHLNDCNLL-ELPSALTCL-SSLEILGLSGNI 884 (1085)
Q Consensus 854 ~L~Ls~n~l~-~lp~~l~~l-~~L~~L~L~~n~ 884 (1085)
.|+|++|++. .+|..+..+ .++..+++.+|.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 8888888877 577666543 456677777765
No 94
>PRK08727 hypothetical protein; Validated
Probab=98.16 E-value=5e-05 Score=80.81 Aligned_cols=165 Identities=15% Similarity=0.118 Sum_probs=93.1
Q ss_pred CCCccccch-hHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHH
Q 044535 170 LDGLIGIES-RVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELF 248 (1085)
Q Consensus 170 ~~~~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll 248 (1085)
.+.|++-.. .+..+..+.. + .....+.|+|.+|+|||+||+++++....+...+.|+... . ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-~---------~~~~~~ 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-A---------AAGRLR 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-H---------hhhhHH
Confidence 345655443 3444444332 1 2234589999999999999999999876665556666311 1 000000
Q ss_pred HHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH---HHH-HHhcCCCC-CCCCCEEEEEeCChh--h-----
Q 044535 249 SRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ---QLK-NLAGDHGW-FGLGSRIIITSRDKQ--V----- 316 (1085)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gs~IiiTTR~~~--v----- 316 (1085)
..+ +.+ .+.-+||+||++... .++ .+...... ...|..||+|++..- +
T Consensus 86 ------------------~~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 86 ------------------DAL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred ------------------HHH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 001 111 133589999996431 121 22211110 124677999998431 1
Q ss_pred --hhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 317 --LKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 317 --~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
... .....+++++++.++..+++.+++....- .-..+....+++.+.|-.
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 111 23568899999999999999987754221 223355666777776544
No 95
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.2e-05 Score=87.61 Aligned_cols=191 Identities=14% Similarity=0.078 Sum_probs=108.5
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc---ceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE---GCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~l 243 (1085)
|...+++||-+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+..... ..|.... ....+
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i 84 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEI 84 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHH
Confidence 3456789999999999999886542 2356789999999999999999986543211 0111100 00000
Q ss_pred HHHHHHHHhc---CCCCCCCCCccchHHHHH-hhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-hhh
Q 044535 244 QEELFSRLLE---DGDLSLGASGLGHTFMNT-RLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRD-KQV 316 (1085)
Q Consensus 244 ~~~ll~~~~~---~~~~~~~~~~~~~~~l~~-~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~~v 316 (1085)
.......+.. .....+.+..+....+.. ...++.-++|+|+++.. ..+++++..+........+|.+|.. ..+
T Consensus 85 ~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI 164 (484)
T PRK14956 85 TKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKI 164 (484)
T ss_pred HccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhc
Confidence 0000000000 000000000000111111 12346678999999764 4577777666543445565555554 333
Q ss_pred hhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 317 LKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 317 ~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
... .....|.+.+++.++..+.+.+.+-..+ ..-..+....|++.++|.+
T Consensus 165 ~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 165 PETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSV 216 (484)
T ss_pred cHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChH
Confidence 332 4456799999999999988877654322 1223456788999999987
No 96
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.14 E-value=9.9e-06 Score=90.46 Aligned_cols=40 Identities=33% Similarity=0.720 Sum_probs=23.6
Q ss_pred cccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCC
Q 044535 683 KLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPD 724 (1085)
Q Consensus 683 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 724 (1085)
+|+.|.+++|..+..+|..+ .++|++|++++|..+..+|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 46666666666666666533 34666666666655544443
No 97
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6.2e-05 Score=84.53 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=112.7
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc----CcceEEEeehhhhhhhhcHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ----FEGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~~~~~~~~~~~~s~~~~~~ 241 (1085)
.|...+.++|-+...+.+...+..+. -...+.|+|+.|+||||+|+.+++.+-.. +...... ...+-.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 35566889999999999999886542 34578899999999999999999876431 1111000 000000
Q ss_pred HHHHHHHHH-------Hhc---CCC--C-CCCCCccchHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcCCCCC
Q 044535 242 RLQEELFSR-------LLE---DGD--L-SLGASGLGHTFMNTRL-----RRKTVLIVLDDVENS--QQLKNLAGDHGWF 301 (1085)
Q Consensus 242 ~l~~~ll~~-------~~~---~~~--~-~~~~~~~~~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~ 301 (1085)
...+.+... +.. .+. . .....++ +..+.+.+ .+++-++|+|+++.. ...+.++..+...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111111110 000 000 0 0000111 11222222 246678999999764 3355555544433
Q ss_pred CCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 302 GLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 302 ~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
.....+|++|... .+... .....+.+.+++.++..+++........ -..+....+++.++|.|.....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4455655555433 33332 3457899999999999999987432111 223456789999999997655443
No 98
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.12 E-value=5.6e-07 Score=104.98 Aligned_cols=150 Identities=27% Similarity=0.308 Sum_probs=79.6
Q ss_pred CCccccCcccccccccCcc-cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCC--CccEE
Q 044535 727 GDMKYLSLSETAIEELPSS-VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESME--RLETL 803 (1085)
Q Consensus 727 ~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L 803 (1085)
..|+.+++++|.+..+... +..+.+|+.+.+.+|.....- .+..+..+..+++..|.....- .+..+. +|+.+
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l 237 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLREL 237 (414)
T ss_pred hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceecc--CcccchhHHHHHH
Confidence 3444444444555544432 355666666666666543221 1222333333344443322211 111122 37888
Q ss_pred EccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC---C-c-ccCCCCCCCEE
Q 044535 804 YLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL---P-S-ALTCLSSLEIL 878 (1085)
Q Consensus 804 ~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l---p-~-~l~~l~~L~~L 878 (1085)
++++|++..++..+..+.++..|++.++. +..+.. +...+.+..+....+.+... . . .....+++...
T Consensus 238 ~l~~n~i~~~~~~~~~~~~l~~l~~~~n~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 238 YLSGNRISRSPEGLENLKNLPVLDLSSNR-----ISNLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred hcccCccccccccccccccccccchhhcc-----cccccc--ccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 88888888776677778888888888777 333322 44555666666666665521 1 1 14455566666
Q ss_pred ECCCCCCCc
Q 044535 879 GLSGNIFES 887 (1085)
Q Consensus 879 ~L~~n~l~~ 887 (1085)
.+..|.+..
T Consensus 311 ~~~~~~~~~ 319 (414)
T KOG0531|consen 311 TLELNPIRK 319 (414)
T ss_pred ccccCcccc
Confidence 666655443
No 99
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.10 E-value=0.0001 Score=75.86 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=61.5
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCC
Q 044535 275 RKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHP 349 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 349 (1085)
+.+-++|+|+++.. ...+.+...+....+.+.+|++|++. .+... .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 45668999999764 34666666665555677888877754 22222 34568999999999999998776 1
Q ss_pred CCCHHHHHHHHHHHhcCCch
Q 044535 350 TEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 350 ~~~~~~~~~~i~~~~~glPL 369 (1085)
-..+.+..+++.++|.|.
T Consensus 169 --i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 --ISEEAAELLLALAGGSPG 186 (188)
T ss_pred --CCHHHHHHHHHHcCCCcc
Confidence 113567899999999885
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=2.2e-05 Score=93.19 Aligned_cols=193 Identities=17% Similarity=0.104 Sum_probs=106.5
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|...+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+...-... +..+..+.+ ...+...
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~pCg~C~s----Cr~i~~g 85 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEPCGVCQS----CTQIDAG 85 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCCCcccHH----HHHHhcc
Confidence 3456789999999999999987542 246788999999999999999988653211000 000000000 0000000
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHh--------hcCCceEEEEeCCCCHHH--HHHHhcCCCCCCCCCEEEEEeCChh-
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTR--------LRRKTVLIVLDDVENSQQ--LKNLAGDHGWFGLGSRIIITSRDKQ- 315 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~--------l~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IiiTTR~~~- 315 (1085)
-...+.. .+. ........+++. ..+++-++|+|+++.... .+.|+..+.......++|++|.+..
T Consensus 86 ~~~DvlE---ida-As~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 86 RYVDLLE---IDA-ASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred CccceEE---Eec-cccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 0000000 000 000111111111 124566899999976532 4455544443345677777776543
Q ss_pred hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 316 VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 316 v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
+... .....+.+..++.++..+.+.+.+-..+. .-..+....|++.++|.+--+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHH
Confidence 2221 33456788899999999888776643321 123356678999998887433
No 101
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.8e-05 Score=87.04 Aligned_cols=178 Identities=14% Similarity=0.149 Sum_probs=110.1
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc---------------------Ccce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ---------------------FEGC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 225 (1085)
|...+++||-+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.++..+--. +..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3456789999999999988886442 23578899999999999999998754211 1112
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
+.+.. +...++.++. +++...... -..+++-++|+|+++.. ...+.|...+....+
T Consensus 88 ~eida----as~~~vddIR-~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 88 IEIDA----ASNTSVDDIK-VILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAP 145 (491)
T ss_pred EEEec----ccCCCHHHHH-HHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCC
Confidence 22211 1111222211 121111100 01245668999999654 346666666655556
Q ss_pred CCEEEEEeCC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 304 GSRIIITSRD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 304 gs~IiiTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
..++|++|.+ ..+... .....+++++++.++..+.+.+.+...+. .-..+....|++.++|.+-
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMR 212 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 7777776643 344332 45678999999999999998877644332 1223456788888988764
No 102
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.08 E-value=3.8e-05 Score=88.22 Aligned_cols=171 Identities=19% Similarity=0.323 Sum_probs=96.7
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+++.|++..++++.+.+.. +-...+-|.++|++|+|||++|++++++....|- .+ ....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v-~~~~---- 200 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RV-VGSE---- 200 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Ee-ehHH----
Confidence 346789999999998876532 1123566889999999999999999997654321 11 1111
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccch-HHHHHhhcCCceEEEEeCCCCHH------------H----HHHHhcCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGH-TFMNTRLRRKTVLIVLDDVENSQ------------Q----LKNLAGDHGW 300 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~ 300 (1085)
+ .....+.. .... ..+...-...+.+|+||+++... . +..+......
T Consensus 201 -----l----~~~~~g~~-------~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 201 -----L----VQKFIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -----H----hHhhccch-------HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 0 00000000 0001 11111223467899999997541 1 2223322221
Q ss_pred C--CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcCC
Q 044535 301 F--GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 301 ~--~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~gl 367 (1085)
+ ..+.+||.||........ ..+..++++..+.++..++|..++.+...+. ..+ ..+++.+.|.
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 1 235567777765433221 2356799999999999999998775433222 222 3455555553
No 103
>PRK09087 hypothetical protein; Validated
Probab=98.07 E-value=7.1e-05 Score=78.91 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=82.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
.+.+.|||++|+|||+|++.++.... ..|+... .....+... +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~----------~~~~~~~~~----------------------~ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN----------EIGSDAANA----------------------A 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH----------HcchHHHHh----------------------h
Confidence 36689999999999999999887532 2244210 011111110 1
Q ss_pred cCCceEEEEeCCCCH----HHHHHHhcCCCCCCCCCEEEEEeCCh---------hhhhc-CCCeEEEeecCCHHHHHHHH
Q 044535 274 RRKTVLIVLDDVENS----QQLKNLAGDHGWFGLGSRIIITSRDK---------QVLKT-GVDEMYEVEELNCREALQLF 339 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~----~~~~~l~~~~~~~~~gs~IiiTTR~~---------~v~~~-~~~~~~~l~~L~~~ea~~Lf 339 (1085)
.+ -+|++||++.. +.+-.+..... ..|..||+|++.. .+... ....++++++++.++-.+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 11 27888999542 33333332222 2467899998732 22222 45678999999999999999
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHH
Q 044535 340 SLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKV 373 (1085)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 373 (1085)
.+++-... ..-.+++..-|++.+.|..-++..
T Consensus 163 ~~~~~~~~--~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 163 FKLFADRQ--LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 88774322 122346667777777776655553
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=5.2e-05 Score=89.27 Aligned_cols=196 Identities=17% Similarity=0.091 Sum_probs=106.7
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|...+.++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+...- |... .. .+-....+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~~-~~----Cg~C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKDG-DC----CNSCSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCCC-CC----CcccHHHHH
Confidence 4456789999999999999886442 246788999999999999999998763211 0000 00 000000000
Q ss_pred HHHHHhcCCCCCCCC-CccchHHHH---Hh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-h
Q 044535 247 LFSRLLEDGDLSLGA-SGLGHTFMN---TR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRD-K 314 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~-~~~~~~~l~---~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~-~ 314 (1085)
+..... .+-..+.. ...+...++ +. ...++-++|+|+++.. .....|...+....+...+|++|.. .
T Consensus 82 i~~~~h-~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 82 INTNQS-VDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred HHcCCC-CceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChH
Confidence 000000 00000000 000111111 11 1123446999999763 4456666544433445666655543 3
Q ss_pred hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHHh
Q 044535 315 QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVLG 375 (1085)
Q Consensus 315 ~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~g 375 (1085)
.+... .....+++.+++.++....+...+-..+. .-..+.+..+++.++|.+ .|+..+-
T Consensus 161 KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 33322 34568899999999999888776533221 122345678888998865 3444443
No 105
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=1.6e-07 Score=101.33 Aligned_cols=110 Identities=21% Similarity=0.305 Sum_probs=60.5
Q ss_pred CCCCCCEEEccCCCchhhhccCCchh-hhcCCCCccEEecCCCCCC---CCCcccCCCCCCCEEECCCCC-CCcCC----
Q 044535 819 HLPQLSLLSLENCKNILVFLTNLPLA-LLSGLCSLTELHLNDCNLL---ELPSALTCLSSLEILGLSGNI-FESLN---- 889 (1085)
Q Consensus 819 ~l~~L~~L~L~~~~~l~~~l~~l~~~-~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~-l~~l~---- 889 (1085)
+.++|+.|.+..|+.+.. .... .-.+.+.|+.+++..|... ++...-.+++.|+.|.++++. +++.+
T Consensus 318 ~~~~L~~l~l~~c~~fsd----~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSD----RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCCceEEEeccccchhhh----hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 445666666666653211 1111 1235566666666666544 233334566677777777654 23332
Q ss_pred ---CCCCCCCCEeeccccccccc--cCCCCCCCCCCeEEEeCCCCCCc
Q 044535 890 ---LKPFSCLTHLNVSYCKRLQS--LQEFPSPLRLVNLQAHECIYLET 932 (1085)
Q Consensus 890 ---~~~l~~L~~L~l~~c~~L~~--lp~l~~~~~L~~L~i~~c~~L~~ 932 (1085)
......|..|.+++|+.+.. +..+..+..|+.+++.+|.....
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 23345677777777776642 23455555666777777766544
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.05 E-value=0.00012 Score=78.03 Aligned_cols=146 Identities=16% Similarity=0.226 Sum_probs=84.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
..+.|+|..|+|||.||+++++.+...-..++|+.. ... ... ...+.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~~---------~~~-------------------~~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AEL---------LDR-------------------GPELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HHH---------Hhh-------------------hHHHHHhhh
Confidence 578899999999999999999877655445666632 111 100 011222222
Q ss_pred CCceEEEEeCCCCH---HHHHH-HhcCCCC-CCCCCEEEEEeCChh--hhh-------c-CCCeEEEeecCCHHHHHHHH
Q 044535 275 RKTVLIVLDDVENS---QQLKN-LAGDHGW-FGLGSRIIITSRDKQ--VLK-------T-GVDEMYEVEELNCREALQLF 339 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IiiTTR~~~--v~~-------~-~~~~~~~l~~L~~~ea~~Lf 339 (1085)
+-. +||+||+... .+|+. +...+.. ...|.+||+|++... +.. . ....++++++++.++-.+.+
T Consensus 97 ~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 222 6788999632 23322 2222111 134678999887432 111 0 23467899999999999999
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 340 SLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
..++....- .-..++..-+++.+.|-.-++.
T Consensus 176 ~~ka~~~~~--~l~~ev~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 176 QLRASRRGL--HLTDEVGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHH
Confidence 866643221 1224556667766666544443
No 107
>PF14516 AAA_35: AAA-like domain
Probab=98.05 E-value=0.0011 Score=74.56 Aligned_cols=204 Identities=11% Similarity=0.180 Sum_probs=115.3
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc-cCcceEEEeehhhhhh--hhcHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN-QFEGCCFLENVREESA--KRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~--~~~~~~l 243 (1085)
+.+.+..|.|...-+++.+.+... -..+.|.|+-.+|||+|...+.+.... .|. ++++. ...... .......
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEE-eecCCCcccCCHHHH
Confidence 445667889985555555555421 357889999999999999999987754 343 34443 222211 1234444
Q ss_pred HHHHHHHHhcCCCC----------CCCCCccchHHHHHhh-c--CCceEEEEeCCCCHHH--------HHHHhc---CCC
Q 044535 244 QEELFSRLLEDGDL----------SLGASGLGHTFMNTRL-R--RKTVLIVLDDVENSQQ--------LKNLAG---DHG 299 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~----------~~~~~~~~~~~l~~~l-~--~kr~LlVLDdv~~~~~--------~~~l~~---~~~ 299 (1085)
.+.+...+...-.. ...........+.+.+ . +++++|+||+|+..-. +..+.. ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 44443333221101 0111122233444432 2 5899999999975422 111111 101
Q ss_pred CCCC-CCEEEEEeC---Chhhhhc-----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 300 WFGL-GSRIIITSR---DKQVLKT-----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 300 ~~~~-gs~IiiTTR---~~~v~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
.... ..-.+|... ....... .+...+++++++.+|...|...+-.. -.....+++...+||+|.-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHH
Confidence 0001 111222222 1111111 34567899999999999999876422 1123388999999999999
Q ss_pred HHHHhhhhcCC
Q 044535 371 LKVLGCFLFGR 381 (1085)
Q Consensus 371 l~~~g~~L~~~ 381 (1085)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999988653
No 108
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=5.1e-05 Score=90.71 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=108.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc---------------------ce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE---------------------GC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~ 225 (1085)
|...+++||-+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... ..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 3456789999999999999886542 2355679999999999999999986533210 01
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
+.+.. ....++.. .++++..+. ..-..+++-++|+|+++.. ...+.|+..+.....
T Consensus 91 ieida----as~~~Vdd-iR~li~~~~-----------------~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~ 148 (647)
T PRK07994 91 IEIDA----ASRTKVED-TRELLDNVQ-----------------YAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE 148 (647)
T ss_pred eeecc----cccCCHHH-HHHHHHHHH-----------------hhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCC
Confidence 11100 00001111 011111100 0112356678999999764 456666665554455
Q ss_pred CCEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 304 GSRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 304 gs~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
..++|++|.+.. +... .....|.+++++.++..+.+...+-..+. ....+....|++.++|.+-.
T Consensus 149 ~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 149 HVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRD 216 (647)
T ss_pred CeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 667776666543 3322 34578999999999999998765532221 22235567889999997753
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.04 E-value=0.00024 Score=74.61 Aligned_cols=151 Identities=17% Similarity=0.199 Sum_probs=82.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMN 270 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 270 (1085)
....+.|+|..|+|||.|.+++++.+....+ .++|+.. ......+...+... ....++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~~~~~~----------~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFADALRDG----------EIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHHHHHTT----------SHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHHHHHcc----------cchhhh
Confidence 3445789999999999999999998776544 2445521 11222222222211 123344
Q ss_pred HhhcCCceEEEEeCCCCH---HHHH----HHhcCCCCCCCCCEEEEEeCCh-hhh--------hc-CCCeEEEeecCCHH
Q 044535 271 TRLRRKTVLIVLDDVENS---QQLK----NLAGDHGWFGLGSRIIITSRDK-QVL--------KT-GVDEMYEVEELNCR 333 (1085)
Q Consensus 271 ~~l~~kr~LlVLDdv~~~---~~~~----~l~~~~~~~~~gs~IiiTTR~~-~v~--------~~-~~~~~~~l~~L~~~ 333 (1085)
+.++ .-=+|++|||+.. ..|+ .+...+. ..|.+||+|++.. .-. .. ....++++++++++
T Consensus 93 ~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 93 DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 5555 3447788999653 2121 1222211 2477999999643 111 11 35568999999999
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 334 EALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 334 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
+..+++.+.|-...-. -.+++.+-+++.+.+..
T Consensus 170 ~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 170 DRRRILQKKAKERGIE--LPEEVIEYLARRFRRDV 202 (219)
T ss_dssp HHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCH
Confidence 9999999887533322 23345555665554443
No 110
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00013 Score=84.33 Aligned_cols=197 Identities=13% Similarity=0.084 Sum_probs=107.3
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc--CcceEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ--FEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|...+.++|-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+... +....|...... ..+.-...
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~---~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE---PCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC---CCCCCHHH
Confidence 3456789999998999988886432 23557899999999999999999876321 100000000000 00000000
Q ss_pred HHHHHHHhcC----CCCCCCCCccchHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC-
Q 044535 245 EELFSRLLED----GDLSLGASGLGHTFMNTRL-----RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSR- 312 (1085)
Q Consensus 245 ~~ll~~~~~~----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR- 312 (1085)
.++....... ........++.. .+.+.+ .+++-++|+|+++.. ..++.+...+....+.+.+|++|.
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0000000000 000000001111 111112 245568899999754 456666665554456777766654
Q ss_pred Chhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 313 DKQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 313 ~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
...+... .....+++++++.++..+.+...+-..+ ..-..+.+..+++.++|.+--
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRD 224 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 3344332 2345789999999999888876653221 122345678899999997743
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.03 E-value=0.00014 Score=77.44 Aligned_cols=164 Identities=15% Similarity=0.168 Sum_probs=92.0
Q ss_pred ccccch-hHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHH
Q 044535 173 LIGIES-RVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRL 251 (1085)
Q Consensus 173 ~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~ 251 (1085)
++|-.. .+..+.++... ...+.+.|+|+.|+|||+||+++++.....-..+.|+..- ... ....+
T Consensus 25 ~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-~~~------~~~~~----- 90 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-KRA------WFVPE----- 90 (235)
T ss_pred ccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-HHh------hhhHH-----
Confidence 446332 33444444332 2345788999999999999999999776554445555321 100 00000
Q ss_pred hcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH---HHHHH----HhcCCCCCCCC-CEEEEEeCChhhh------
Q 044535 252 LEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS---QQLKN----LAGDHGWFGLG-SRIIITSRDKQVL------ 317 (1085)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~---~~~~~----l~~~~~~~~~g-s~IiiTTR~~~v~------ 317 (1085)
+.+.+. +--+|++||++.. .+|+. +..... ..| .++|+||+...-.
T Consensus 91 -----------------~~~~~~-~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~--e~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 91 -----------------VLEGME-QLSLVCIDNIECIAGDELWEMAIFDLYNRIL--ESGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred -----------------HHHHhh-hCCEEEEeChhhhcCCHHHHHHHHHHHHHHH--HcCCCeEEEeCCCChHHcCcccH
Confidence 111111 1247899999653 23322 221111 123 4799999854211
Q ss_pred ---hc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 318 ---KT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 318 ---~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
.. ....+++++++++++-.+.+.+++.... -.-.+++..-+++.+.|..-++.
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHH
Confidence 11 3457899999999999999987664322 22334566677777776554443
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=4.5e-05 Score=85.83 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=88.6
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
.|...++++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....| ..+.. +. .....+..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~----~~-~~~~~i~~ 86 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNG----SD-CRIDFVRN 86 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEecc----Cc-ccHHHHHH
Confidence 3455678999999999999988643 2346777799999999999999998764322 22211 11 11111111
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH---HHHHHHhcCCCCCCCCCEEEEEeCChhhh-hc--
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS---QQLKNLAGDHGWFGLGSRIIITSRDKQVL-KT-- 319 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-- 319 (1085)
.+ ....... .....+-+||+||++.. +..+.+.........++++|+||...... ..
T Consensus 87 ~l-~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 87 RL-TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred HH-HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 11 1111000 01134557889999755 22233333233344678899988754322 11
Q ss_pred CCCeEEEeecCCHHHHHHHHHH
Q 044535 320 GVDEMYEVEELNCREALQLFSL 341 (1085)
Q Consensus 320 ~~~~~~~l~~L~~~ea~~Lf~~ 341 (1085)
.....+.++..+.++..+++..
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHH
Confidence 3345677878888888776653
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.0001 Score=88.02 Aligned_cols=191 Identities=17% Similarity=0.135 Sum_probs=107.9
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc--C--cceEEEeehhhhhhhhcHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ--F--EGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F--~~~~~~~~~~~~s~~~~~~~l 243 (1085)
...+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-.. . .+...-. .+.-..
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p--------Cg~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP--------CGVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC--------CCccHH
Confidence 456789999888899999887542 34667899999999999999998765311 0 0000000 000000
Q ss_pred HHHHHHHHhcCCC-CCCCC-CccchHHHHHhh--------cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEe
Q 044535 244 QEELFSRLLEDGD-LSLGA-SGLGHTFMNTRL--------RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITS 311 (1085)
Q Consensus 244 ~~~ll~~~~~~~~-~~~~~-~~~~~~~l~~~l--------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT 311 (1085)
...+-.. ...+ ..+.. .....+.+++.+ .++.-++|||+|+.. ...+.++..+.......++|++|
T Consensus 84 C~~i~~g--~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 84 CRDIDSG--RFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHcC--CCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 0000000 0000 00000 001111122111 234558899999764 44667776665544566777666
Q ss_pred CC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 312 RD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 312 R~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
.+ ..+... .....++++.++.++..+.+.+.+-..+.. -..+....|++.++|-+--+
T Consensus 162 td~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~--ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 162 TDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVP--AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 54 333322 456789999999999999888765433221 22355678888888876433
No 114
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=9.6e-05 Score=87.25 Aligned_cols=180 Identities=15% Similarity=0.112 Sum_probs=107.8
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc---------------------Ccce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ---------------------FEGC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------------F~~~ 225 (1085)
|...+++||-+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+-.. |...
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 3456789999999999999996442 23567899999999999999999865221 1112
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
..+.. +...++..+ ++++..+.-. -..++.-++|+|+|+.. ...++++..+....+
T Consensus 91 ~eida----as~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~ 148 (509)
T PRK14958 91 FEVDA----ASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPS 148 (509)
T ss_pred EEEcc----cccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCC
Confidence 22211 111222221 1122111100 01245568889999764 446666665554456
Q ss_pred CCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 304 GSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 304 gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
.+++|++|.+. .+... .....+++++++.++..+.+...+-..+.. -..+....|++.++|-+--+
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDA 217 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHH
Confidence 77787766554 33222 345678999999998877766554332211 12344667888888877433
No 115
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.00013 Score=82.30 Aligned_cols=245 Identities=18% Similarity=0.197 Sum_probs=140.3
Q ss_pred CCCCCccccchhHHHHHHhhccC--CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcc--eEEEeehhhhhhhhcHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIG--LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEG--CCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l 243 (1085)
..++.+.+|+.+++++...|..- .....-+.|+|.+|+|||+.++.+++++...... ++++.+. ......++
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~----~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL----ELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee----eCCCHHHH
Confidence 44566999999999998877531 2223348899999999999999999988766443 4666443 23455566
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhc--CCceEEEEeCCCCHHH-----HHHHhcCCCCCCCCCEEEE--EeCCh
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLR--RKTVLIVLDDVENSQQ-----LKNLAGDHGWFGLGSRIII--TSRDK 314 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gs~Iii--TTR~~ 314 (1085)
..+++.++....... ....+....+.+.+. ++.+++|||+++.... +-.|....... .++|+| .+-+.
T Consensus 90 ~~~i~~~~~~~p~~g-~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 90 LSKILNKLGKVPLTG-DSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHcCCCCCCC-CchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 677777665322111 222233455555554 5889999999976432 33333333222 454433 33333
Q ss_pred hhhhc--------CCCeEEEeecCCHHHHHHHHHHhh---ccCCCCCCCHHHHHHHHHHHhcC-CchHHHHHhhh--hcC
Q 044535 315 QVLKT--------GVDEMYEVEELNCREALQLFSLNA---FKLNHPTEDYMGLSNQVVHYAKG-IPLALKVLGCF--LFG 380 (1085)
Q Consensus 315 ~v~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~g~~--L~~ 380 (1085)
..... -....+..++-+.+|-.+.+..++ |......+...+++..++..-+| .-.|+..+-.. +..
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 22211 122346788999999999998765 34444455555666666666664 34455444322 211
Q ss_pred C------CHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcc
Q 044535 381 R------SKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACF 426 (1085)
Q Consensus 381 ~------~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f 426 (1085)
+ +.+.-..+.... -.....-....|+.++|-.+..++..
T Consensus 247 ~~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 247 REGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred hhCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 1 122222221111 12233344677888888776655544
No 116
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=4.5e-05 Score=90.64 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=105.7
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC---------------------cceE
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF---------------------EGCC 226 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~ 226 (1085)
...+++||-+..++.+..++..+. -.+.+.++|+.|+||||+|+.++..+.... ...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 446789999999999999886432 235667999999999999999998663211 1111
Q ss_pred EEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcCCCCCCCC
Q 044535 227 FLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--QLKNLAGDHGWFGLG 304 (1085)
Q Consensus 227 ~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~g 304 (1085)
++.. +...++.. .++++...... -..+++-++|+|+++... ..+.++..+......
T Consensus 92 ei~~----~~~~~vd~-ir~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 92 EVDA----ASNTQVDA-MRELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred Eeec----cccCCHHH-HHHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 1100 00011111 11121111100 012456689999998653 356666555544456
Q ss_pred CEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 305 SRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 305 s~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
+.+|++|.+.. +... .....++++.++.++..+.+...+-..+. ....+....|++.++|.+-
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 77777665443 2211 23467899999999998888765532221 1223456788889999774
No 117
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00023 Score=84.82 Aligned_cols=196 Identities=19% Similarity=0.084 Sum_probs=108.9
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|...+++||-+..++.|..++..+ .-.+.+.++|+.|+||||+|+.++..+....... .-.+-.+ .....
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~pCg~C--------~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT-ATPCGVC--------ESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-CCccccc--------HHHHH
Confidence 345678999999999999998643 2245678999999999999999998654211000 0000000 00000
Q ss_pred HHHHHhcCCCC-CCCC-CccchHHHH---Hh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCC-
Q 044535 247 LFSRLLEDGDL-SLGA-SGLGHTFMN---TR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRD- 313 (1085)
Q Consensus 247 ll~~~~~~~~~-~~~~-~~~~~~~l~---~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~- 313 (1085)
+...-.+..+. .+.. ...+...++ +. ..+++-++|+|+++.. ...+.|+..+........+|++|.+
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 00000000000 0000 000111111 11 1245568899999753 4566666666555556777766544
Q ss_pred hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch-HHHHH
Q 044535 314 KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL-ALKVL 374 (1085)
Q Consensus 314 ~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 374 (1085)
..+... .....|++..++.++..+.+.+.+-..+. .-..+....|++.++|-+- |+..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444432 44678999999999998888776543322 1223456778888888763 44443
No 118
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.95 E-value=2.2e-07 Score=106.34 Aligned_cols=175 Identities=25% Similarity=0.307 Sum_probs=97.5
Q ss_pred CcccccCCCCCEEEccCCcccccccccccCC-CCCcEEEeeCCCCCCCcchhhcC----------CCCccEEEccCCCCc
Q 044535 743 PSSVECLTELTVLRLQKCKRLKRVSSSICKL-KSLEILYLFGCSKLEGLPEILES----------MERLETLYLAGTPIK 811 (1085)
Q Consensus 743 p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l-~~L~~L~L~~~~~l~~lp~~l~~----------l~~L~~L~L~~~~i~ 811 (1085)
|-.|..+.+|+.|.+.+|.+... .++..+ ..|++|...+ .+..+-+.|.. ...|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~--Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN--SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc--cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 55567778888888888875431 111111 1233332211 11111111100 123555566666666
Q ss_pred ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC-C
Q 044535 812 ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-L 890 (1085)
Q Consensus 812 ~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~ 890 (1085)
.+..++.-++.|+.|+|++|+ ++... .+..++.|++|||++|.+..+|..-..-..|..|.+++|.++++- +
T Consensus 178 ~mD~SLqll~ale~LnLshNk-----~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNK-----FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGI 250 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhh-----hhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhH
Confidence 666677777777777777777 44443 466777777777777777776653222223777777777777765 7
Q ss_pred CCCCCCCEeecccccccc--ccCCCCCCCCCCeEEEeCCC
Q 044535 891 KPFSCLTHLNVSYCKRLQ--SLQEFPSPLRLVNLQAHECI 928 (1085)
Q Consensus 891 ~~l~~L~~L~l~~c~~L~--~lp~l~~~~~L~~L~i~~c~ 928 (1085)
.+|.+|+.|++++|-... .+..+..+..|..|.+.++|
T Consensus 251 e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 777777777777653221 12223333444555555554
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00017 Score=85.61 Aligned_cols=186 Identities=12% Similarity=0.095 Sum_probs=110.8
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC--c-------------------ce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF--E-------------------GC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~-------------------~~ 225 (1085)
|...++++|-+..++.|.+.+..+ .-.+.+.++|+.|+||||+|+.+++.+-... . .+
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv 90 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDV 90 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCce
Confidence 344577899988888888888643 2246778899999999999999998653211 0 01
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
.++.. ....++..+. .+...+.. .-..+++-++|+|+++.. ...+.|...+.....
T Consensus 91 ~eId~----a~~~~Id~iR-~L~~~~~~-----------------~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~ 148 (624)
T PRK14959 91 VEIDG----ASNRGIDDAK-RLKEAIGY-----------------APMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPA 148 (624)
T ss_pred EEEec----ccccCHHHHH-HHHHHHHh-----------------hhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCC
Confidence 11100 0001111110 11100000 012345678999999764 446666665544345
Q ss_pred CCEEEEEeCC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHHhhh
Q 044535 304 GSRIIITSRD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVLGCF 377 (1085)
Q Consensus 304 gs~IiiTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~g~~ 377 (1085)
...+|++|.+ ..+... .....++++.++.++..+.+...+..... .-..+.++.|++.++|.+ .|+..+...
T Consensus 149 ~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 149 RVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred CEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5667766655 333322 33467899999999999888876543321 123456778888898854 676666543
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00014 Score=83.59 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=105.7
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc--------cCcceEEEeehhhhhhhh
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN--------QFEGCCFLENVREESAKR 238 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------~F~~~~~~~~~~~~s~~~ 238 (1085)
|...++++|.+..++.+.+.+..+ .-.+.+.++|++|+||||+|+.+++.+.. .|...++-.+ . ....
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~~ 88 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASNN 88 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccCC
Confidence 344678999999999999988643 23467889999999999999999887643 1222221110 0 0111
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC-Chh
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSR-DKQ 315 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~~~ 315 (1085)
++..+ .++...+... -..+++-++|+|+++.. ..++.+...+......+.+|++|. ...
T Consensus 89 ~~~~i-~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 89 SVDDI-RNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CHHHH-HHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 11111 1122111100 01234557999998654 335666544433334556666553 333
Q ss_pred hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 316 VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 316 v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
+... .....+++++++.++....+...+...+.. -..+....+++.++|.+-
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 3222 344678999999999998888766443321 223567788888888654
No 121
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.90 E-value=0.00013 Score=88.41 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=92.4
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc--cC---cceEEEeehhhhhhhhcHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN--QF---EGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F---~~~~~~~~~~~~s~~~~~~ 241 (1085)
|...+.++|.+..+..+.+.+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+..- +.....+..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~-~~~l~~d~~ 226 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD-GTTLRWDPR 226 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe-chhccCCHH
Confidence 44567899999999988777643 23457999999999999999999875431 12 112232111 101001111
Q ss_pred HHHHHH---------------HHHHhcC------------CCCC---CCCC-ccchHHHHHhhcCCceEEEEeCCCCH--
Q 044535 242 RLQEEL---------------FSRLLED------------GDLS---LGAS-GLGHTFMNTRLRRKTVLIVLDDVENS-- 288 (1085)
Q Consensus 242 ~l~~~l---------------l~~~~~~------------~~~~---~~~~-~~~~~~l~~~l~~kr~LlVLDdv~~~-- 288 (1085)
.+...+ +....-. .-.- +... ...+..+.+.+.++++.++-|+.|..
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 111111 1100000 0000 0000 11234555666667777765555432
Q ss_pred HHHHHHhcCCCCCCCCCEEEE--EeCChhhhhc---CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 289 QQLKNLAGDHGWFGLGSRIII--TSRDKQVLKT---GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 289 ~~~~~l~~~~~~~~~gs~Iii--TTR~~~v~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
..|+.+...+....+...|+| ||++...... .....+.+.+++.+|.++++.+.+-
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 224555444443344444555 5665432221 2334678999999999999987653
No 122
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00036 Score=86.56 Aligned_cols=178 Identities=16% Similarity=0.117 Sum_probs=106.9
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC----c-------------------
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF----E------------------- 223 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~------------------- 223 (1085)
|...+++||.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++.+--.. .
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3456789999999999999987442 235678999999999999999998763110 0
Q ss_pred ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCC
Q 044535 224 GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWF 301 (1085)
Q Consensus 224 ~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~ 301 (1085)
.++++.. ....++.++. ++...+ ...-..+++-++|||+++.. ...+.|+..+...
T Consensus 90 dv~eida----as~~~Vd~iR-~l~~~~-----------------~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp 147 (824)
T PRK07764 90 DVTEIDA----ASHGGVDDAR-ELRERA-----------------FFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP 147 (824)
T ss_pred cEEEecc----cccCCHHHHH-HHHHHH-----------------HhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC
Confidence 0011100 0000111111 111000 00012345557889999764 4466666665555
Q ss_pred CCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 302 GLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 302 ~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
...+.+|++|.+. .+... .....|++..++.++..+++.+.+-..+. ....+....|++.++|.+.
T Consensus 148 P~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 148 PEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 5677777666543 34432 45678999999999998888765422221 1223456778889998773
No 123
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00064 Score=81.69 Aligned_cols=193 Identities=12% Similarity=0.099 Sum_probs=106.0
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc--CcceEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ--FEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|.....+||-+..+..|.+++..+ .-...+.++|+.|+||||+|+.+++.+--. ...-.|...... ..+.-...
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 345678999999999999988643 223568899999999999999999866321 110011100000 00000000
Q ss_pred HHHHHHHhcCCCCCC--------CCCccchHHHHHh----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEE
Q 044535 245 EELFSRLLEDGDLSL--------GASGLGHTFMNTR----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIIT 310 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~--------~~~~~~~~~l~~~----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiT 310 (1085)
+.+.. ..+.+. ...++....+... ..+.+-++|+|+++.. ...+.|...+....+.+.+|++
T Consensus 88 ~~~~~----g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~ 163 (620)
T PRK14954 88 RDFDA----GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFA 163 (620)
T ss_pred HHHhc----cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 00000 000000 0011111111111 2234557899999764 3466666655544456666655
Q ss_pred eC-Chhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 311 SR-DKQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 311 TR-~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
|. ...+... .....+++.+++.++....+.+.+-..+. .-..+.+..+++.++|..-
T Consensus 164 t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 164 TTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred eCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 54 3444332 45678999999999988888765532221 1233567788999998553
No 124
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0006 Score=81.80 Aligned_cols=191 Identities=17% Similarity=0.126 Sum_probs=110.5
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc----ceEEEeehhhhhhhhcHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE----GCCFLENVREESAKRGVHR 242 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~s~~~~~~~ 242 (1085)
|...+++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+++.+..... ...+-.+ +.-.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c--------g~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC--------GVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC--------cccH
Confidence 3456789999999999999886442 2456889999999999999999986643221 0000000 0000
Q ss_pred HHHHHHHHHhcCCCCCCC----CCccchHHHHH---h-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEE
Q 044535 243 LQEELFSRLLEDGDLSLG----ASGLGHTFMNT---R-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRII 308 (1085)
Q Consensus 243 l~~~ll~~~~~~~~~~~~----~~~~~~~~l~~---~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~Ii 308 (1085)
-...+.. ..+.++. ....+...+++ . ...++-++|+|+++.. ...+.|...+....+.+.+|
T Consensus 91 ~C~~i~~----g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fI 166 (598)
T PRK09111 91 HCQAIME----GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFI 166 (598)
T ss_pred HHHHHhc----CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEE
Confidence 0011110 0000000 00011111111 1 1234557899999654 34666665555445677777
Q ss_pred EEe-CChhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 309 ITS-RDKQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 309 iTT-R~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
++| ....+... .....+++..++.++....+.+.+-..+. .-..+....|++.++|.+.-+.
T Consensus 167 l~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 167 FATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred EEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 655 33334332 34578999999999999999876643321 1223567788999999875443
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00033 Score=81.75 Aligned_cols=162 Identities=14% Similarity=0.161 Sum_probs=93.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
..+.|+|..|+|||+|++++++.+....+ .++|+.. ..+...+...+.... .....+++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~~~~~l~~~~--------~~~~~~~~~ 203 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARKAVDILQKTH--------KEIEQFKNE 203 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHHhh--------hHHHHHHHH
Confidence 45889999999999999999997754332 3344421 122223322222100 012223333
Q ss_pred hcCCceEEEEeCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCCh-hhh--------hc-CCCeEEEeecCCHHHHHH
Q 044535 273 LRRKTVLIVLDDVENSQ---Q-LKNLAGDHGW-FGLGSRIIITSRDK-QVL--------KT-GVDEMYEVEELNCREALQ 337 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~-~v~--------~~-~~~~~~~l~~L~~~ea~~ 337 (1085)
++ +.-+||+||+.... . .+.+...+.. ...|..||+|+... ... .. ...-++++++++.++..+
T Consensus 204 ~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~ 282 (450)
T PRK14087 204 IC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATA 282 (450)
T ss_pred hc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHH
Confidence 33 34588899995432 1 2222221110 12455788886532 121 11 345678899999999999
Q ss_pred HHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 338 LFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 338 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
++.+++-..+....-.+++..-|++.+.|.|-.+..+.
T Consensus 283 iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 283 IIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 99888743221112335678889999999886665544
No 126
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.81 E-value=4.9e-07 Score=103.56 Aligned_cols=121 Identities=26% Similarity=0.265 Sum_probs=72.4
Q ss_pred CcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEE
Q 044535 776 LEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTEL 855 (1085)
Q Consensus 776 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L 855 (1085)
|.+.+.++| .+..+-+.+.-++.|+.|+|++|+++.+. .+..++.|++|||+.|. +..+|.-...++. |+.|
T Consensus 166 L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-----L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 166 LATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-----LRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred Hhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-----hccccccchhhhh-heee
Confidence 444444443 33334455555666777777777766554 55666777777777766 5555543333433 7777
Q ss_pred ecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC----CCCCCCCCEeeccccc
Q 044535 856 HLNDCNLLELPSALTCLSSLEILGLSGNIFESLN----LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 856 ~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~ 905 (1085)
.|+||.++++- .+.++.+|+.||++.|-+.+.. +..|..|..|+|.+||
T Consensus 238 ~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 77777666553 3566677777777776655543 4455566667777665
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.80 E-value=0.00021 Score=77.72 Aligned_cols=130 Identities=12% Similarity=0.092 Sum_probs=70.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccC--cceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQF--EGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMN 270 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~ 270 (1085)
....+.++|++|+||||+|+.+++.+...- ....++.. .. + . +.....+. ....++
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~-~~-~------~----l~~~~~g~----------~~~~~~ 98 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV-ER-A------D----LVGEYIGH----------TAQKTR 98 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe-cH-H------H----hhhhhccc----------hHHHHH
Confidence 456678999999999999999998653211 11122211 11 0 0 11111110 011112
Q ss_pred Hhhc-CCceEEEEeCCCCH----------HHHHHHhcCCCCCCCCCEEEEEeCChhhh---------hcCCCeEEEeecC
Q 044535 271 TRLR-RKTVLIVLDDVENS----------QQLKNLAGDHGWFGLGSRIIITSRDKQVL---------KTGVDEMYEVEEL 330 (1085)
Q Consensus 271 ~~l~-~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~---------~~~~~~~~~l~~L 330 (1085)
+.+. ...-+|++|+++.. +.++.+............+|+++...... .......++++.+
T Consensus 99 ~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~ 178 (261)
T TIGR02881 99 EVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDY 178 (261)
T ss_pred HHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCC
Confidence 2221 12348889999752 34556655544333333555555433221 1123456899999
Q ss_pred CHHHHHHHHHHhhc
Q 044535 331 NCREALQLFSLNAF 344 (1085)
Q Consensus 331 ~~~ea~~Lf~~~a~ 344 (1085)
+.+|-.+++.+.+.
T Consensus 179 ~~~el~~Il~~~~~ 192 (261)
T TIGR02881 179 TVEELMEIAERMVK 192 (261)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987663
No 128
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.0005 Score=80.79 Aligned_cols=190 Identities=13% Similarity=0.031 Sum_probs=106.1
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-----CcceEEEeehhhhhh--hhc
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-----FEGCCFLENVREESA--KRG 239 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~--~~~ 239 (1085)
|.....++|-+..+..+..++..+. -.+...++|+.|+||||+|+.++..+... .++.. ..+...... ..+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCc
Confidence 3445779999999999999986542 24566789999999999999999865311 01000 000000000 000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSR 312 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 312 (1085)
+.. +....... .++ ...+.+. ..+++-++|+|+++.. ...+.+...+....+...+|++|.
T Consensus 90 ~~e--------idaas~~g---vd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 90 LIE--------IDAASNRG---IDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred EEE--------EeCccCCC---HHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 000 00000000 000 1111111 1245668999999754 345666655554445666666554
Q ss_pred C-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 313 D-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 313 ~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
+ ..+... .....+++.+++.++....+...+-..+. .-..+....+++.++|.+-.+.
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 3 333322 34567899999999999888876543221 2223556778888888765443
No 129
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00034 Score=84.32 Aligned_cols=191 Identities=14% Similarity=0.099 Sum_probs=107.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|.....++|-+..++.+...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+-.+-.+.+
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~----------- 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE----------- 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH-----------
Confidence 345678999999999999988644 23466779999999999999999986532111000000000000
Q ss_pred HHHHHhcCCCC-CCCC-Cccch---HHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEe-CC
Q 044535 247 LFSRLLEDGDL-SLGA-SGLGH---TFMNTR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITS-RD 313 (1085)
Q Consensus 247 ll~~~~~~~~~-~~~~-~~~~~---~~l~~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTT-R~ 313 (1085)
.. ....+. .... ...+. ..+.+. ..+++-++|+|+++.. ..+.+|+..+....+...+|++| +.
T Consensus 82 ~~---~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 82 NV---NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred hh---cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 00 000000 0000 00001 111111 1245668899999754 45667766555444556655555 44
Q ss_pred hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHH
Q 044535 314 KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVL 374 (1085)
Q Consensus 314 ~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 374 (1085)
..+... .....+++.+++.++..+.+...+-..+. ....+.+..+++.++|-+ .|+..+
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI--~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI--SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 444432 34568999999999999888765432221 122345678889998866 444433
No 130
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.76 E-value=0.00019 Score=83.75 Aligned_cols=157 Identities=18% Similarity=0.298 Sum_probs=89.1
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-----cceEEEeeh
Q 044535 168 GALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-----EGCCFLENV 231 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~~~~~~~~~ 231 (1085)
....++.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v 257 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-I 257 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-c
Confidence 3446788899999988776532 112345688999999999999999999876542 2233442 1
Q ss_pred hhhh--hhh--cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh-hcCCceEEEEeCCCCHH---------H-----HH
Q 044535 232 REES--AKR--GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR-LRRKTVLIVLDDVENSQ---------Q-----LK 292 (1085)
Q Consensus 232 ~~~s--~~~--~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVLDdv~~~~---------~-----~~ 292 (1085)
.... ..+ ......+.++ ...++. ..+++++|+||+++..- + +.
T Consensus 258 ~~~eLl~kyvGete~~ir~iF------------------~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIF------------------QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred cchhhcccccchHHHHHHHHH------------------HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 1100 000 0000011111 111111 13478999999997431 1 22
Q ss_pred HHhcCCCCCC--CCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 293 NLAGDHGWFG--LGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 293 ~l~~~~~~~~--~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
.++..+.... .+..||.||-....... ..+..++++..+.++..++|..+.
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3433332211 23445555544433221 345678999999999999998876
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00042 Score=80.88 Aligned_cols=181 Identities=15% Similarity=0.192 Sum_probs=106.2
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-----c-----------------ce
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-----E-----------------GC 225 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~-----------------~~ 225 (1085)
...++++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++.+...- . ..
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 446789999999999999886432 236678899999999999999998653210 0 00
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
..+.. ....++..+. ++...+. ......++-++|+|+++.. ...+.|...+....+
T Consensus 93 ~~i~g----~~~~gid~ir-~i~~~l~-----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 93 LEIDG----ASHRGIEDIR-QINETVL-----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred EEeec----cccCCHHHHH-HHHHHHH-----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 01100 0000111111 1110000 0001245668899998754 345555555544445
Q ss_pred CCEEEEEeCC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHH
Q 044535 304 GSRIIITSRD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKV 373 (1085)
Q Consensus 304 gs~IiiTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~ 373 (1085)
...+|++|.. ..+... .....+++.+++.++..+.+...+-..+. .-..+.++.+++.++|.+ .|+..
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6677766643 333322 34567899999999998888776533221 123456778889998866 34333
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00047 Score=80.93 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=109.4
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc-cC-------------------cceE
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN-QF-------------------EGCC 226 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F-------------------~~~~ 226 (1085)
|...+++||-+..++.+...+..+. -.++..++|+.|+||||+|+.+++.+-. .. ...+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 3456789999999999999886442 3456689999999999999999986521 11 0011
Q ss_pred EEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCC
Q 044535 227 FLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLG 304 (1085)
Q Consensus 227 ~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~g 304 (1085)
+..+ .+...++..+...+ ...... -..+++-++|+|+++.. +..++|+..+....+.
T Consensus 89 ~eld---aas~~gId~IReli-e~~~~~-----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 89 IEMD---AASNRGIDDIRELI-EQTKYK-----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEec---cccccCHHHHHHHH-HHHhhC-----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 1100 01111122221111 110000 01134568899999764 4466666655544567
Q ss_pred CEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 305 SRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 305 s~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
+++|++|.+.. +... .....+++.+++.++..+.+...+-..+. .-..+.+..|++.++|.+--+
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDT 215 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHH
Confidence 88887776642 2222 34578999999999999988766543322 122456778999999987433
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00097 Score=80.86 Aligned_cols=195 Identities=14% Similarity=0.069 Sum_probs=109.3
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|...+.+||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-+- ..+.....+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~--------~c~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGR--------PCGTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--------CCccCHHHHH
Confidence 3446789999999999988886442 245678999999999999999998763211100000 0000001111
Q ss_pred HHHHHhcC----CCCCCCCCccchHHHHHh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 044535 247 LFSRLLED----GDLSLGASGLGHTFMNTR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK- 314 (1085)
Q Consensus 247 ll~~~~~~----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~- 314 (1085)
+....... ........++. ..+.+. ...++-++|+|+++.. +..+.|...+....+.+.+|++|.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 11000000 00000000000 111111 1235668999999654 44666665554444567777766543
Q ss_pred hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHH
Q 044535 315 QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKV 373 (1085)
Q Consensus 315 ~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 373 (1085)
.+... .....+++..++.++....+.+.+...+.. -..+....+++.++|.+..+..
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 33332 344678899999999988887766433221 2235677899999998854443
No 134
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.74 E-value=0.00012 Score=84.01 Aligned_cols=154 Identities=17% Similarity=0.309 Sum_probs=89.7
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
...++.|.+..+++|.+.+.. +-...+-|.++|++|+|||++|+++++.....|- .+... ..
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~s-eL--- 253 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFL---RVVGS-EL--- 253 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEecc-hh---
Confidence 346688999999998887642 1123456789999999999999999998765542 11110 00
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGWF 301 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 301 (1085)
... ..+.. .......+.......+.+|+||+++... .+..++..+..+
T Consensus 254 ------~~k----~~Ge~------~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~ 317 (438)
T PTZ00361 254 ------IQK----YLGDG------PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGF 317 (438)
T ss_pred ------hhh----hcchH------HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhh
Confidence 000 00000 0001111222223567888889875321 112222222211
Q ss_pred --CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhcc
Q 044535 302 --GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFK 345 (1085)
Q Consensus 302 --~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~ 345 (1085)
..+.+||+||.....+.. ..+..++++..+.++..++|..++.+
T Consensus 318 ~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 318 DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888875544322 24567899999999999999987643
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.72 E-value=0.00082 Score=78.39 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=87.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT 271 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 271 (1085)
...+.|+|.+|+|||+||+++++.+...++ .+.|+.. .....++...+.... ...+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~~~----------~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKEGK----------LNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhccc----------HHHHHH
Confidence 345889999999999999999998776543 3445521 112223322222111 122333
Q ss_pred hhcCCceEEEEeCCCCH---H----HHHHHhcCCCCCCCCCEEEEEeC-Chhhhh----c-----CCCeEEEeecCCHHH
Q 044535 272 RLRRKTVLIVLDDVENS---Q----QLKNLAGDHGWFGLGSRIIITSR-DKQVLK----T-----GVDEMYEVEELNCRE 334 (1085)
Q Consensus 272 ~l~~kr~LlVLDdv~~~---~----~~~~l~~~~~~~~~gs~IiiTTR-~~~v~~----~-----~~~~~~~l~~L~~~e 334 (1085)
..+.+.-+|++||++.. . .+-.+...+. ..|..||+||. .+.-.. . .....+++++.+.+.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 44444568999999743 1 1212221111 23557888884 332211 1 234578999999999
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 335 ALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 335 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
..+++.+.+-.... .-..++...|++.+.|.-
T Consensus 268 r~~IL~~~~~~~~~--~l~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 268 RKKIARKMLEIEHG--ELPEEVLNFVAENVDDNL 299 (440)
T ss_pred HHHHHHHHHHhcCC--CCCHHHHHHHHhccccCH
Confidence 99999887743221 122456677777777654
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.72 E-value=0.00036 Score=87.12 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------
Q 044535 149 ELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------ 222 (1085)
Q Consensus 149 ~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 222 (1085)
..+++...++..+..+ ...+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++...-
T Consensus 163 ~~l~~~~~~l~~~~r~---~~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 163 DALEKYTVDLTEKAKN---GKIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred hHHHHHhhhHHHHHhc---CCCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 3555555555555443 344679999999999999886542 23456999999999999999999874421
Q ss_pred cceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccch-HHHHHhhcCCceEEEEeCCCCHH-----------H
Q 044535 223 EGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGH-TFMNTRLRRKTVLIVLDDVENSQ-----------Q 290 (1085)
Q Consensus 223 ~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVLDdv~~~~-----------~ 290 (1085)
...+|..+......... ..+..+... ..+.+.-..++.+|++|+++... .
T Consensus 238 ~~~~~~~~~~~l~a~~~------------------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~ 299 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTK------------------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDA 299 (731)
T ss_pred CCeEEEecHHHHhhhcc------------------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHH
Confidence 23444433211110000 000111111 11222113467899999986331 1
Q ss_pred HHHHhcCCCCCCCC-CEEEEEeCChhh----h----hcCCCeEEEeecCCHHHHHHHHHHhh
Q 044535 291 LKNLAGDHGWFGLG-SRIIITSRDKQV----L----KTGVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 291 ~~~l~~~~~~~~~g-s~IiiTTR~~~v----~----~~~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
-+.+.+.+. .| -++|-+|...+. . -......++++.++.++..+++....
T Consensus 300 ~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 300 SNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 223333332 23 344444443221 1 01223578999999999999998644
No 137
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=1.8e-05 Score=81.95 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=51.3
Q ss_pred EEEeeCCCCCCCCCC--C--CCCCceEEecCCCCch---hhhHhhhhccccceecccCCCCCCCCCCC-CCCCcccEEec
Q 044535 574 YLHWHRYPLKSLPSN--F--NPENLVELDMHHSNLE---HLWEEMQHALNLRRIDLSYSLHLNETPDL-SSARNLEIMVL 645 (1085)
Q Consensus 574 ~L~l~~~~l~~lp~~--~--~l~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l-~~l~~L~~L~L 645 (1085)
.|.+.++.+.+.-.. + ..++++.|||.+|.|+ .+...+.+++.|++|+|+.|.....+..+ ..+.+|++|.|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 444555554443322 1 4678899999999887 34444678999999999998776666555 46678888887
Q ss_pred cCc
Q 044535 646 DGC 648 (1085)
Q Consensus 646 ~~~ 648 (1085)
.|.
T Consensus 129 NgT 131 (418)
T KOG2982|consen 129 NGT 131 (418)
T ss_pred cCC
Confidence 764
No 138
>PRK06620 hypothetical protein; Validated
Probab=97.67 E-value=0.0002 Score=74.80 Aligned_cols=128 Identities=14% Similarity=0.020 Sum_probs=73.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
+.+.|||++|+|||+||+++++.... .++... ... . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~------~~~----~-------------------------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI------FFN----E-------------------------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh------hhc----h-------------------------hHH-
Confidence 56899999999999999987765421 222100 000 0 001
Q ss_pred CCceEEEEeCCCCHHH--HHHHhcCCCCCCCCCEEEEEeCChhh-------hhc-CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 275 RKTVLIVLDDVENSQQ--LKNLAGDHGWFGLGSRIIITSRDKQV-------LKT-GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IiiTTR~~~v-------~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
+..-++++||++...+ +-.+..... ..|..||+|++.... ... ....+++++++++++..+++.+.+-
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 1234688899975432 222222221 246789999874321 111 3456899999999998888877663
Q ss_pred cCCCCCCCHHHHHHHHHHHhcCC
Q 044535 345 KLNHPTEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 345 ~~~~~~~~~~~~~~~i~~~~~gl 367 (1085)
... -.-.+++.+-|++.+.|-
T Consensus 162 ~~~--l~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 162 ISS--VTISRQIIDFLLVNLPRE 182 (214)
T ss_pred HcC--CCCCHHHHHHHHHHccCC
Confidence 211 112234555666655554
No 139
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0034 Score=76.02 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=106.9
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc-----------------------cCcc
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN-----------------------QFEG 224 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-----------------------~F~~ 224 (1085)
...+.++|-+..++.|..++..+. -.+.+.++|+.|+||||+|+.++..+-- +|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 446789999999999999886432 2466789999999999999999886531 1111
Q ss_pred eEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCC
Q 044535 225 CCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFG 302 (1085)
Q Consensus 225 ~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~ 302 (1085)
. .+. . ....++..+. +++.++.... ..+++-++|+|+++.. ...+.|...+....
T Consensus 93 ~-~ld-~---~~~~~vd~Ir-~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 93 H-ELD-A---ASNNSVDDIR-NLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred E-Eec-c---cccCCHHHHH-HHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 1 110 0 0011111111 1111111000 1234557899998764 34666666555444
Q ss_pred CCCEEEEEe-CChhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 303 LGSRIIITS-RDKQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 303 ~gs~IiiTT-R~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
..+.+|++| +...+... ....++++++++.++....+.+.+-..+. .-..+.+..|++.++|-.-
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 567766655 44444443 45678999999999999888876543322 1223456788888988664
No 140
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.67 E-value=6.9e-05 Score=82.90 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=59.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc-cCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCC------ccch
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN-QFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGAS------GLGH 266 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~------~~~~ 266 (1085)
-+..+|+|++|+||||||+++|+.+.. +|+.++|+..+++. ...+.++++++...+.... .+.... ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHH
Confidence 356789999999999999999997654 79999999776542 2367777777763222111 000000 0011
Q ss_pred HHHHHh-hcCCceEEEEeCCCCHH
Q 044535 267 TFMNTR-LRRKTVLIVLDDVENSQ 289 (1085)
Q Consensus 267 ~~l~~~-l~~kr~LlVLDdv~~~~ 289 (1085)
+.-+.. ..+++++|++|++....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHH
Confidence 111111 35799999999996543
No 141
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.66 E-value=0.00011 Score=77.21 Aligned_cols=189 Identities=19% Similarity=0.167 Sum_probs=116.4
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh--ccCcceEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA--NQFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|...+.++|-+..+..+.+.+.. ...+....+|++|.|||+-|++++..+- +-|+.++--.+ .|...+..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchh
Confidence 45567899999999999888864 4678888999999999999999998653 34554443222 23333333111
Q ss_pred HHH--HHHHhcCCCCCCCCCccchHHHHHhhcCCc-eEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhhc
Q 044535 245 EEL--FSRLLEDGDLSLGASGLGHTFMNTRLRRKT-VLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVLKT 319 (1085)
Q Consensus 245 ~~l--l~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 319 (1085)
..+ ++++....... . .. ..++ -.+|||+++.. +.|.++......+...++.|..+-.-.....
T Consensus 107 ~Kik~fakl~~~~~~~---~--------~~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 107 EKIKNFAKLTVLLKRS---D--------GY-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhhcCHHHHhhccccc---c--------CC-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 111 11111110000 0 00 0123 47889999875 4588888777766777777665543332221
Q ss_pred ---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-chHHHHH
Q 044535 320 ---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI-PLALKVL 374 (1085)
Q Consensus 320 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 374 (1085)
.....|..++|.+++..+-+...+-..+.. -..+..+.|++.++|- --|+.++
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 334568899999999888888777544432 2345677888888873 3444443
No 142
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.66 E-value=2.8e-05 Score=82.72 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=57.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc-cCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCC-CCCCC----CCccchH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN-QFEGCCFLENVREESAKRGVHRLQEELFSRLLEDG-DLSLG----ASGLGHT 267 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~-~~~~~----~~~~~~~ 267 (1085)
-..++|.|++|+|||||++++|+.+.. +|+..+|+..+++ ....+.++++++...+.... +.... .......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 467889999999999999999997643 6888889865532 12467777777733222111 00000 0001111
Q ss_pred HHHHh-hcCCceEEEEeCCCCH
Q 044535 268 FMNTR-LRRKTVLIVLDDVENS 288 (1085)
Q Consensus 268 ~l~~~-l~~kr~LlVLDdv~~~ 288 (1085)
..+.. -.++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 3479999999998654
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.66 E-value=0.00049 Score=86.50 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------
Q 044535 149 ELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------ 222 (1085)
Q Consensus 149 ~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------ 222 (1085)
..+++...++..+..+ ...+.+|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++....
T Consensus 168 ~~l~~~~~~L~~~~r~---~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 168 SALDQYTTDLTAQARE---GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hhHHHHhhhHHHHhcC---CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 3555555555555443 345689999999999999886543 23456999999999999999999875432
Q ss_pred cceEEEeehhhhhhh----hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh-cCCceEEEEeCCCCHH-------H
Q 044535 223 EGCCFLENVREESAK----RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL-RRKTVLIVLDDVENSQ-------Q 290 (1085)
Q Consensus 223 ~~~~~~~~~~~~s~~----~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~~-------~ 290 (1085)
...+|..+....... .....-.++ .+.+.- .+++++|++|++.... +
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~---------------------ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~ 301 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKS---------------------VIDEVKASPQPIILFIDEAHTLIGAGGQAGQ 301 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHH---------------------HHHHHHhcCCCeEEEEeChHHhccCCCcccc
Confidence 123343322211100 011111111 122211 2468999999985542 1
Q ss_pred HH---HHhcCCCCCCCCCEEEEEeCChhhh----h----cCCCeEEEeecCCHHHHHHHHHHhhcc--CCCCCCCHHHHH
Q 044535 291 LK---NLAGDHGWFGLGSRIIITSRDKQVL----K----TGVDEMYEVEELNCREALQLFSLNAFK--LNHPTEDYMGLS 357 (1085)
Q Consensus 291 ~~---~l~~~~~~~~~gs~IiiTTR~~~v~----~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~ 357 (1085)
.+ .+.+.+. ...-++|-||...+.. . ......+.+++++.+++.+++....-. ..+...-..+..
T Consensus 302 ~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al 379 (852)
T TIGR03345 302 GDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAV 379 (852)
T ss_pred ccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHH
Confidence 11 2333332 1234555555543221 1 123468999999999999997543311 111111223444
Q ss_pred HHHHHHhcC
Q 044535 358 NQVVHYAKG 366 (1085)
Q Consensus 358 ~~i~~~~~g 366 (1085)
..+++.+.+
T Consensus 380 ~~~~~ls~r 388 (852)
T TIGR03345 380 VAAVELSHR 388 (852)
T ss_pred HHHHHHccc
Confidence 556666654
No 144
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.0011 Score=80.22 Aligned_cols=193 Identities=16% Similarity=0.070 Sum_probs=106.9
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-cceEEEeehhhhhhhhcHHHHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
.....++|.+..+..|..++..+. -.+.+.++|+.|+||||+|+.+++.+-... .....-. .+.....+.
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~--------Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP--------CGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC--------CcccHHHHH
Confidence 445789999999999999887542 235678999999999999999998763321 1000000 000000111
Q ss_pred HHHHHhcCCCCCCCC-CccchHHHHHh--------hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-
Q 044535 247 LFSRLLEDGDLSLGA-SGLGHTFMNTR--------LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK- 314 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~-~~~~~~~l~~~--------l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~- 314 (1085)
+...... +-..+.. .....+.+++. ..+++-++|+|+++.. +..+.|+..+........+|++|.+.
T Consensus 84 i~~g~h~-D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 84 IAAGNAL-DVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCCc-cEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 1000000 0000000 00111111111 1234568899999764 44666666555434456666555543
Q ss_pred hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 315 QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 315 ~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
.+... .....+++..++.++....+.+.+-..+.. -..+....+++.++|.+..+.
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 33332 445778889999999888887665332211 123457788899998775443
No 145
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.66 E-value=0.00029 Score=76.20 Aligned_cols=167 Identities=19% Similarity=0.200 Sum_probs=97.8
Q ss_pred CCCCccccchhHHHHHHhhccCCCc-eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHH
Q 044535 169 ALDGLIGIESRVEKVESLLCIGLVD-VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEEL 247 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~l 247 (1085)
..+.+.+|+.++..+..++...+.. +..|.|+|.+|.|||.+.+++.+....+ .+|+..+.+. ....+.++|
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~ecf----t~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVECF----TYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHHhc----cHHHHHHHH
Confidence 3467889999999999999766554 3456899999999999999999876333 4688666554 445555556
Q ss_pred HHHHh-cCCCCCC-----CCCccchHHHHH--hhc--CCceEEEEeCCCCHHHHHH-----HhcCCCCCCCCCEEEEEeC
Q 044535 248 FSRLL-EDGDLSL-----GASGLGHTFMNT--RLR--RKTVLIVLDDVENSQQLKN-----LAGDHGWFGLGSRIIITSR 312 (1085)
Q Consensus 248 l~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~kr~LlVLDdv~~~~~~~~-----l~~~~~~~~~gs~IiiTTR 312 (1085)
+.+.. ...+... .+....+..+++ ... ++.++||||+++...+.++ +...........-.|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 65553 1111111 111111222222 122 4699999999987765332 2111110111233444443
Q ss_pred Ch--hhhh--cCC--CeEEEeecCCHHHHHHHHHHh
Q 044535 313 DK--QVLK--TGV--DEMYEVEELNCREALQLFSLN 342 (1085)
Q Consensus 313 ~~--~v~~--~~~--~~~~~l~~L~~~ea~~Lf~~~ 342 (1085)
.. ..-. .+. ..++..+.-+.+|..+++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 1111 122 245677889999999998654
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.65 E-value=0.00065 Score=77.66 Aligned_cols=154 Identities=17% Similarity=0.269 Sum_probs=89.7
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA 236 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 236 (1085)
....++.|.+..+++|.+.+.. +-...+-+.++|++|.|||++|+++++.....|- .+.. ..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~~-s~--- 214 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVVG-SE--- 214 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEeh-HH---
Confidence 3456789999998888776531 1123567889999999999999999987654432 1110 00
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCC
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGW 300 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 300 (1085)
+ .....+.. .......+.......+.+|++|+++... .+..+......
T Consensus 215 ------l----~~k~~ge~------~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 215 ------F----VQKYLGEG------PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred ------H----HHHhcchh------HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 0 00000100 0001112222334578899999986421 12233322221
Q ss_pred C--CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 301 F--GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 301 ~--~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
+ ..+..||+||........ ..+..++++..+.++..++|..+.-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 1 235667888875443321 3456789999999999999886653
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.63 E-value=0.0013 Score=78.54 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=109.4
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-----CcceEEEeehhhhhhhhcHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-----FEGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----F~~~~~~~~~~~~s~~~~~~ 241 (1085)
|....+++|-+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++.+-.. +++. .... +
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~-~C~~--C-------- 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG-ECSS--C-------- 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc-cchH--H--------
Confidence 3456789999999999999986542 34678899999999999999999865321 1100 0000 0
Q ss_pred HHHHHHHHHHhcCCCCC---CCCC-ccchHHHHHh--------hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEE
Q 044535 242 RLQEELFSRLLEDGDLS---LGAS-GLGHTFMNTR--------LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRI 307 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~---~~~~-~~~~~~l~~~--------l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I 307 (1085)
+++. .....+ +... ......+++. ..+++-++|+|+++.. ..++.|...+....+...+
T Consensus 80 ---~~i~----~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vf 152 (563)
T PRK06647 80 ---KSID----NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVF 152 (563)
T ss_pred ---HHHH----cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEE
Confidence 0000 000000 0000 0111111111 2345668999999654 4467777666655566777
Q ss_pred EEEeCC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 308 IITSRD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 308 iiTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
|++|.+ ..+... .....++..+++.++..+.+...+...+. .-..+.+..|++.++|.+-.+
T Consensus 153 I~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 153 IFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred EEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 766654 333332 44567899999999998888876643332 223456677888899877433
No 148
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.63 E-value=0.0014 Score=76.33 Aligned_cols=154 Identities=15% Similarity=0.179 Sum_probs=87.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT 271 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 271 (1085)
...+.|+|..|+|||+||+++++.+....+ .++|+. .. .....+...+... ....+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~---------~~~~~~~~~~~~~----------~~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SE---------KFTNDFVNALRNN----------KMEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HH---------HHHHHHHHHHHcC----------CHHHHHH
Confidence 346889999999999999999998876543 234442 11 1122222222211 1223334
Q ss_pred hhcCCceEEEEeCCCCHH---H-HHHHhcCCCC-CCCCCEEEEEeCCh-hhhh--------c-CCCeEEEeecCCHHHHH
Q 044535 272 RLRRKTVLIVLDDVENSQ---Q-LKNLAGDHGW-FGLGSRIIITSRDK-QVLK--------T-GVDEMYEVEELNCREAL 336 (1085)
Q Consensus 272 ~l~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IiiTTR~~-~v~~--------~-~~~~~~~l~~L~~~ea~ 336 (1085)
.+++ .-+|||||++... . .+.+...+.. ...|..||||+... .... . .....+++++.+.++..
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 4433 3478899996431 1 1222211110 12355688887632 1111 1 22357899999999999
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 337 QLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 337 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
+++.+.+-.... .-..++...|++.+.|..-.
T Consensus 275 ~il~~~~~~~~~--~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 275 AILQKKAEEEGL--ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHH
Confidence 999887744321 22346667777777776543
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=1.5e-05 Score=82.43 Aligned_cols=184 Identities=23% Similarity=0.251 Sum_probs=120.2
Q ss_pred CCCccccCccccccc---ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCC-CCcchhhcCCCCcc
Q 044535 726 SGDMKYLSLSETAIE---ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKL-EGLPEILESMERLE 801 (1085)
Q Consensus 726 ~~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~ 801 (1085)
...++.|+|.+|.|. ++-.-+.++|.|++|+|+.|+....+...-..+.+|++|-|.|.... ...-..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 345667777777776 34445678899999999988765443221134668888888764332 22334556677788
Q ss_pred EEEccCCCCcccC---ccccC-CCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC--cccCCCCCC
Q 044535 802 TLYLAGTPIKELP---SSIDH-LPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP--SALTCLSSL 875 (1085)
Q Consensus 802 ~L~L~~~~i~~lp---~~l~~-l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L 875 (1085)
.|.++.|++..+- ..... -+.+++|++..|..... . ... ..-.-+|++..+.+..|.+.+.. .....++.+
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w-~-~~~-~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLW-L-NKN-KLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHH-H-HHH-hHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 8888887654321 11221 23566677666652110 0 000 11235688888999999887543 446677888
Q ss_pred CEEECCCCCCCcCC----CCCCCCCCEeeccccccccccCC
Q 044535 876 EILGLSGNIFESLN----LKPFSCLTHLNVSYCKRLQSLQE 912 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~~L~~lp~ 912 (1085)
..|+|+.|++.++. +..|++|..|.+.++|....+..
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 89999999988875 88899999999999887776654
No 150
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.0008 Score=78.25 Aligned_cols=149 Identities=14% Similarity=0.113 Sum_probs=82.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
..+.|+|+.|+|||+||+++++.+......+.|+.. ..+...+...+... ....++...+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~~----------~~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRSG----------EMQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhcc----------hHHHHHHHcc
Confidence 567899999999999999999987655444556531 11122222222111 0122333333
Q ss_pred CCceEEEEeCCCCHHH----HHHHhcCCCC-CCCCCEEEEEeCCh-hhh----hc-----CCCeEEEeecCCHHHHHHHH
Q 044535 275 RKTVLIVLDDVENSQQ----LKNLAGDHGW-FGLGSRIIITSRDK-QVL----KT-----GVDEMYEVEELNCREALQLF 339 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~~~----~~~l~~~~~~-~~~gs~IiiTTR~~-~v~----~~-----~~~~~~~l~~L~~~ea~~Lf 339 (1085)
+.-+|++||+..... .+.+...+.. ...|..||+||... ... .. .....+++++++.++..+++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 345788899854311 1122111100 02356788888542 111 11 33468899999999999999
Q ss_pred HHhhccCCCCCCCHHHHHHHHHHHhcC
Q 044535 340 SLNAFKLNHPTEDYMGLSNQVVHYAKG 366 (1085)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~i~~~~~g 366 (1085)
.+++-..+ ..-..++..-++..+.|
T Consensus 281 ~~k~~~~~--~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 281 ERKAEALS--IRIEETALDFLIEALSS 305 (445)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHhcCC
Confidence 88774322 11223444555555544
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=4.7e-05 Score=56.89 Aligned_cols=40 Identities=35% Similarity=0.549 Sum_probs=29.2
Q ss_pred CCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC
Q 044535 850 CSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 850 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
++|++|++++|+++++|..+.+|++|+.|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4677888888888888777788888888888888777653
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.62 E-value=0.0012 Score=77.90 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=88.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcc--eEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEG--CCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT 271 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 271 (1085)
...+.|+|.+|+|||+||+++++.+...++. +.|+.. . .+...+...+... ....+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~---------~~~~~~~~~~~~~----------~~~~~~~ 207 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-E---------KFTNDFVNALRNN----------TMEEFKE 207 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-H---------HHHHHHHHHHHcC----------cHHHHHH
Confidence 3568899999999999999999988776542 344421 1 1112222222111 1123334
Q ss_pred hhcCCceEEEEeCCCCHH----HHHHHhcCCC-CCCCCCEEEEEeCCh--hhh-------hc-CCCeEEEeecCCHHHHH
Q 044535 272 RLRRKTVLIVLDDVENSQ----QLKNLAGDHG-WFGLGSRIIITSRDK--QVL-------KT-GVDEMYEVEELNCREAL 336 (1085)
Q Consensus 272 ~l~~kr~LlVLDdv~~~~----~~~~l~~~~~-~~~~gs~IiiTTR~~--~v~-------~~-~~~~~~~l~~L~~~ea~ 336 (1085)
.++ +.-+|||||++... ..+.+...+. ....|..|||||... .+. .. .....+++++.+.++..
T Consensus 208 ~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 208 KYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred HHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 444 34488899996421 1122221110 012355688887643 111 11 33467899999999999
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 337 QLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 337 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
+++.+.+-... ..-..++...|++.+.|..-.
T Consensus 287 ~il~~~~~~~~--~~l~~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 287 AILKKKAEEEG--IDLPDEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHcCcCCCHHH
Confidence 99998874322 223345677778777776543
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.0011 Score=73.79 Aligned_cols=93 Identities=14% Similarity=0.060 Sum_probs=62.1
Q ss_pred CceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhh-c--CCCeEEEeecCCHHHHHHHHHHhhccCCCCC
Q 044535 276 KTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVLK-T--GVDEMYEVEELNCREALQLFSLNAFKLNHPT 350 (1085)
Q Consensus 276 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 350 (1085)
++-++|+|+++.. ...+.++..+....+++.+|+||.+..... . .....+.+.+++.+++.+.+..... .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~--~--- 180 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP--E--- 180 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc--c---
Confidence 3444567999764 446666665554456788888887764332 2 4457799999999999999876531 1
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHH
Q 044535 351 EDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 351 ~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
...+.+..++..++|.|+....+
T Consensus 181 -~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CChHHHHHHHHHcCCCHHHHHHH
Confidence 11233557788999999755544
No 154
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0019 Score=77.60 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=105.4
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc-ceEEEeehhhhhhhhcHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE-GCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
|...++++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.++..+-..-. ..- . .+......
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~--p--------C~~C~~C~ 80 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE--P--------CNECEICK 80 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--C--------CCccHHHH
Confidence 3456789999999999999987543 3466778999999999999999886531110 000 0 00000000
Q ss_pred HHHHHHhcCCCCCCCC-CccchHH---HHHh-----hcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC-C
Q 044535 246 ELFSRLLEDGDLSLGA-SGLGHTF---MNTR-----LRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSR-D 313 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~-~~~~~~~---l~~~-----l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR-~ 313 (1085)
.+.... ..+-..+.. ...+... +.+. ..+++-++|+|+++.. ..+..|...+........+|++|. .
T Consensus 81 ~i~~g~-~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 81 AITNGS-LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred HHhcCC-CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 000000 000000000 0011111 1111 1245668899999754 456677665554344556665554 3
Q ss_pred hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 314 KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 314 ~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
..+... .....++..+++.++..+.+...+-..+.. -..+....+++.++|-+.
T Consensus 160 ~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 160 HKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMR 215 (559)
T ss_pred hhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 333322 345678899999999888887766433221 123556778888888764
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.56 E-value=0.0014 Score=71.86 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=69.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccC--cceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQF--EGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
-+.++|++|+||||+|+.++..+...- ....|+... . . .+.....+.. .......+++
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~----~----~----~l~~~~~g~~------~~~~~~~~~~-- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT----R----D----DLVGQYIGHT------APKTKEILKR-- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec----H----H----HHhHhhcccc------hHHHHHHHHH--
Confidence 577999999999999999988664321 111233211 0 1 1111222211 0001112222
Q ss_pred cCCceEEEEeCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhc---------CCCeEEEeecCCHH
Q 044535 274 RRKTVLIVLDDVENS-----------QQLKNLAGDHGWFGLGSRIIITSRDKQVLKT---------GVDEMYEVEELNCR 333 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~---------~~~~~~~l~~L~~~ 333 (1085)
-..-+|+||+++.. +.++.+.........+-+||+++........ .....+++++++.+
T Consensus 120 -a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~e 198 (284)
T TIGR02880 120 -AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEA 198 (284)
T ss_pred -ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHH
Confidence 13468889999632 2234444444433445666666653322111 23467899999999
Q ss_pred HHHHHHHHhh
Q 044535 334 EALQLFSLNA 343 (1085)
Q Consensus 334 ea~~Lf~~~a 343 (1085)
|-.+++...+
T Consensus 199 dl~~I~~~~l 208 (284)
T TIGR02880 199 ELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0029 Score=70.17 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=107.7
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc---------------cCcceEEEeehhhhh
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN---------------QFEGCCFLENVREES 235 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~---------------~F~~~~~~~~~~~~s 235 (1085)
+.++|-+..++.+.+.+..+. -.+...++|+.|+||+++|.++++.+-. .++...|+..... .
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~-~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ-H 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc-c
Confidence 568999999999999886442 2478889999999999999999886521 2333344422100 0
Q ss_pred hhhcHHHHHHHHHHHHh-cCCCCCCCCCccchHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEE
Q 044535 236 AKRGVHRLQEELFSRLL-EDGDLSLGASGLGHTFMNTRL-----RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRI 307 (1085)
Q Consensus 236 ~~~~~~~l~~~ll~~~~-~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I 307 (1085)
+..... ........ .......-..++ +..+.+.+ .+.+-++|+|+++.. ....+|+..+.... .+.+
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000 00000000 000000000011 11222222 245668889998764 34555655544334 4456
Q ss_pred EEEeC-Chhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 308 IITSR-DKQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 308 iiTTR-~~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
|++|. ...+... .....+++.+++.++..+.+....... ........++..++|.|.....+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHHH
Confidence 65554 4444443 556789999999999999998764211 11111357899999999665543
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.54 E-value=0.0013 Score=83.29 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------c
Q 044535 150 LVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------E 223 (1085)
Q Consensus 150 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~ 223 (1085)
.+++...++..+..+ ...+.+|||+.+++++...|.... ..-+.++|++|+|||++|+.++.++...+ .
T Consensus 155 ~l~~~~~~l~~~~~~---~~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 155 ALEKYARDLTERARE---GKLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred HHHHHhhhHHHHhhC---CCCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 455555444444332 334679999999999999886543 23455899999999999999999875532 2
Q ss_pred ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCcc-chHHHHHhhc-CCceEEEEeCCCCHH----------HH
Q 044535 224 GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGL-GHTFMNTRLR-RKTVLIVLDDVENSQ----------QL 291 (1085)
Q Consensus 224 ~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~~l~~~l~-~kr~LlVLDdv~~~~----------~~ 291 (1085)
..+|..++......... ....+. ....+.+.-+ +++.+|++|+++... ..
T Consensus 230 ~~~~~l~~~~l~a~~~~------------------~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~ 291 (852)
T TIGR03346 230 KRLLALDMGALIAGAKY------------------RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAG 291 (852)
T ss_pred CeEEEeeHHHHhhcchh------------------hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHH
Confidence 33443322111000000 000111 1112222212 468999999986542 12
Q ss_pred HHHhcCCCCCCCC-CEEEEEeCChhhhh--------cCCCeEEEeecCCHHHHHHHHHHhh
Q 044535 292 KNLAGDHGWFGLG-SRIIITSRDKQVLK--------TGVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 292 ~~l~~~~~~~~~g-s~IiiTTR~~~v~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
+.+.+.+ ..| -++|-+|.....-. ......+.++..+.++..+++....
T Consensus 292 ~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 292 NMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 2233322 223 34444444333211 1233567899999999999887543
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.53 E-value=3.4e-05 Score=93.87 Aligned_cols=148 Identities=23% Similarity=0.242 Sum_probs=98.0
Q ss_pred CCCCEEEccCCccc-cccccccc-CCCCCcEEEeeCCCCC-CCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEE
Q 044535 750 TELTVLRLQKCKRL-KRVSSSIC-KLKSLEILYLFGCSKL-EGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLL 826 (1085)
Q Consensus 750 ~~L~~L~L~~~~~~-~~l~~~l~-~l~~L~~L~L~~~~~l-~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 826 (1085)
.+|++|++++.... ...|..++ -||+|+.|.+++-... +.+...+.++|+|..||+++++++.+ ..++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777777764432 22232232 4788888888774332 33556677889999999999999888 678899999999
Q ss_pred EccCCCchhhhccC-CchhhhcCCCCccEEecCCCCCCCCC-------cccCCCCCCCEEECCCCCCCcCC----CCCCC
Q 044535 827 SLENCKNILVFLTN-LPLALLSGLCSLTELHLNDCNLLELP-------SALTCLSSLEILGLSGNIFESLN----LKPFS 894 (1085)
Q Consensus 827 ~L~~~~~l~~~l~~-l~~~~~~~l~~L~~L~Ls~n~l~~lp-------~~l~~l~~L~~L~L~~n~l~~l~----~~~l~ 894 (1085)
.+.+-. +.. -....+-+|++|+.||+|.......+ +.-..||.|+.||.|++.+...- +..-+
T Consensus 201 ~mrnLe-----~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 201 SMRNLE-----FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP 275 (699)
T ss_pred hccCCC-----CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc
Confidence 888765 222 11223667899999999987666433 23355889999999987766532 33334
Q ss_pred CCCEeeccc
Q 044535 895 CLTHLNVSY 903 (1085)
Q Consensus 895 ~L~~L~l~~ 903 (1085)
+|+.+.+.+
T Consensus 276 ~L~~i~~~~ 284 (699)
T KOG3665|consen 276 NLQQIAALD 284 (699)
T ss_pred cHhhhhhhh
Confidence 555544443
No 159
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.53 E-value=5.9e-06 Score=75.81 Aligned_cols=85 Identities=19% Similarity=0.279 Sum_probs=42.5
Q ss_pred ccEEEccCCCCcccCcc---ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCC
Q 044535 800 LETLYLAGTPIKELPSS---IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLE 876 (1085)
Q Consensus 800 L~~L~L~~~~i~~lp~~---l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 876 (1085)
+..++|++|.+-.++.. +.....|+..+|++|. +..+|......++.++.|+|++|.++++|..+..++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-----fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-----FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch-----hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence 33444444444433332 2233344444555555 444555444455555555555555555555555555555
Q ss_pred EEECCCCCCCcCC
Q 044535 877 ILGLSGNIFESLN 889 (1085)
Q Consensus 877 ~L~L~~n~l~~l~ 889 (1085)
.|+++.|.+...+
T Consensus 104 ~lNl~~N~l~~~p 116 (177)
T KOG4579|consen 104 SLNLRFNPLNAEP 116 (177)
T ss_pred hcccccCccccch
Confidence 5555555555544
No 160
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.52 E-value=0.0009 Score=84.46 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------c
Q 044535 150 LVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------E 223 (1085)
Q Consensus 150 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~ 223 (1085)
.+++...+...+..+ ...+.++||+.+++++.+.|.... ..-+.++|.+|+||||+|+.++.++.... .
T Consensus 160 ~l~~~~~~l~~~~r~---~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 160 ALKKYTIDLTERAEQ---GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred HHHHHhhhHHHHHhc---CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 455555555554433 334679999999999999886543 33456899999999999999999875422 2
Q ss_pred ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCcc-chHHHHHhh-cCCceEEEEeCCCCHH----------HH
Q 044535 224 GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGL-GHTFMNTRL-RRKTVLIVLDDVENSQ----------QL 291 (1085)
Q Consensus 224 ~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~-~~~~l~~~l-~~kr~LlVLDdv~~~~----------~~ 291 (1085)
..+|..+.......... .+..+. ....+.+.. .+++.+|++|+++... .-
T Consensus 235 ~~~~~l~l~~l~ag~~~------------------~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~ 296 (857)
T PRK10865 235 RRVLALDMGALVAGAKY------------------RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAG 296 (857)
T ss_pred CEEEEEehhhhhhccch------------------hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHH
Confidence 33343322211000000 000111 111122211 2468999999986542 12
Q ss_pred HHHhcCCCCCCCCCEEEEEeCChhhh------hc--CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 292 KNLAGDHGWFGLGSRIIITSRDKQVL------KT--GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 292 ~~l~~~~~~~~~gs~IiiTTR~~~v~------~~--~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
+.+.+.+. ...-++|-+|...... .. .....+.+...+.++..+++....
T Consensus 297 ~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 297 NMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 22333322 1234555555444321 11 222356788889999999886543
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00063 Score=86.02 Aligned_cols=167 Identities=20% Similarity=0.189 Sum_probs=93.0
Q ss_pred HHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-C-----c
Q 044535 150 LVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-F-----E 223 (1085)
Q Consensus 150 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-----~ 223 (1085)
..++...++.++... ...+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.++.++... - .
T Consensus 161 ~l~~~~~~l~~~a~~---~~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 161 TLEEFGTNLTKEAID---GNLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred HHHHHHHHHHHHHHc---CCCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 455555555544222 224569999999999999997543 2345699999999999999999987532 1 2
Q ss_pred ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccc-hHHHHHhhcCCceEEEEeCCCCHH---------HHHH
Q 044535 224 GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLG-HTFMNTRLRRKTVLIVLDDVENSQ---------QLKN 293 (1085)
Q Consensus 224 ~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVLDdv~~~~---------~~~~ 293 (1085)
..+|..+...... +.. ..+..++. ...+.+.-..++.+|++|+++... +...
T Consensus 236 ~~i~~l~~~~l~a----------------g~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~ 297 (821)
T CHL00095 236 KLVITLDIGLLLA----------------GTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAAN 297 (821)
T ss_pred CeEEEeeHHHHhc----------------cCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHH
Confidence 3445433221110 000 00111111 112222223568899999985321 1122
Q ss_pred -HhcCCCCCCCCCEEEEEeCChhhhh----c----CCCeEEEeecCCHHHHHHHHHH
Q 044535 294 -LAGDHGWFGLGSRIIITSRDKQVLK----T----GVDEMYEVEELNCREALQLFSL 341 (1085)
Q Consensus 294 -l~~~~~~~~~gs~IiiTTR~~~v~~----~----~~~~~~~l~~L~~~ea~~Lf~~ 341 (1085)
|.+.+. ...-++|.+|....... . .....++++..+.++...++..
T Consensus 298 lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 298 ILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 222221 11245555555443211 1 2335678899999998888764
No 162
>PRK08116 hypothetical protein; Validated
Probab=97.48 E-value=0.00039 Score=75.35 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=27.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..+.++|.+|+|||.||.++++.+..+...++|+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3578999999999999999999887654445555
No 163
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.46 E-value=5.5e-05 Score=77.45 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=41.5
Q ss_pred CCCccEEEccCCCCcccCc-----cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-----CC
Q 044535 797 MERLETLYLAGTPIKELPS-----SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-----LP 866 (1085)
Q Consensus 797 l~~L~~L~L~~~~i~~lp~-----~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-----lp 866 (1085)
-|.|+......|.+..-|. .+.+-.+|+++.+..|..-...++.+....+..+.+|+.|+|.+|.++. +.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence 3455555555555543332 1223345666666555521111111211223344556666666665552 22
Q ss_pred cccCCCCCCCEEECCCCCCCcC
Q 044535 867 SALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 867 ~~l~~l~~L~~L~L~~n~l~~l 888 (1085)
..+...+.|+.|.+..|-++.-
T Consensus 236 ~al~~W~~lrEL~lnDClls~~ 257 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNE 257 (388)
T ss_pred HHhcccchhhhccccchhhccc
Confidence 2333444455555555555443
No 164
>CHL00176 ftsH cell division protein; Validated
Probab=97.46 E-value=0.0014 Score=79.39 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=97.0
Q ss_pred CCCCccccchhHHHHHHhhc---cC-------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLC---IG-------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
..++++|.+...+++.+.+. .. ....+-|.++|++|+|||+||++++......|- .+ .. +.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i---~i-s~---s~-- 251 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF---SI-SG---SE-- 251 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee---ec-cH---HH--
Confidence 45678899888777766542 11 112456889999999999999999987533321 11 10 00
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCCC-
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGWF- 301 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 301 (1085)
+.... .+.. .......+.......+.+|+||+++... .+..++.....+
T Consensus 252 ----f~~~~----~g~~------~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 252 ----FVEMF----VGVG------AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred ----HHHHh----hhhh------HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 00000 0000 0111223444445678999999996431 133444333221
Q ss_pred -CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC
Q 044535 302 -GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKG 366 (1085)
Q Consensus 302 -~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 366 (1085)
..+-.||.||........ ..+..+.++..+.++..++++.++-..... .......+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 234556666665443321 245778999999999999998877432111 11223556666666
No 165
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0014 Score=79.16 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=105.3
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-C-c-------------------ce
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-F-E-------------------GC 225 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~-------------------~~ 225 (1085)
|...+++||-+..++.|...+..+. -.+.+.++|+.|+||||+|+.+++.+-.. . . ..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~ 90 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDV 90 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCe
Confidence 3456789999999999999886442 24567899999999999999999865321 1 0 00
Q ss_pred EEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 226 CFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 226 ~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
+.+.. ....++..+ +++...+.-. -...++-++|+|+|+.. ...+.|...+....+
T Consensus 91 ~eid~----~s~~~v~~i-r~l~~~~~~~-----------------p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~ 148 (576)
T PRK14965 91 FEIDG----ASNTGVDDI-RELRENVKYL-----------------PSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPP 148 (576)
T ss_pred eeeec----cCccCHHHH-HHHHHHHHhc-----------------cccCCceEEEEEChhhCCHHHHHHHHHHHHcCCC
Confidence 00100 000111111 1111111000 01234557889999764 345666655544445
Q ss_pred CCEEEEEeCC-hhhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHH
Q 044535 304 GSRIIITSRD-KQVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVL 374 (1085)
Q Consensus 304 gs~IiiTTR~-~~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 374 (1085)
...+|++|.+ ..+... .....+++..++.++....+...+-..+. .-..+....+++.++|.. .|+..+
T Consensus 149 ~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 149 HVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 6777765543 444432 34567889999999988887665432221 122345677888888855 444443
No 166
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.44 E-value=0.00012 Score=81.55 Aligned_cols=93 Identities=18% Similarity=0.109 Sum_probs=60.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCC------ccch
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGAS------GLGH 266 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~------~~~~ 266 (1085)
-..++|+|++|.|||||++.+++.+... |+..+|+..+++ ....+.+++++++..+.... .+.... ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast-~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVAST-FDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEec-CCCChHHHHHHHHHHH
Confidence 4678999999999999999999987655 988898876532 22467778888754433221 111000 0111
Q ss_pred HHHHHh-hcCCceEEEEeCCCCHH
Q 044535 267 TFMNTR-LRRKTVLIVLDDVENSQ 289 (1085)
Q Consensus 267 ~~l~~~-l~~kr~LlVLDdv~~~~ 289 (1085)
+..+.. -.+++++|++|++....
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHH
Confidence 111122 35799999999996543
No 167
>PRK12377 putative replication protein; Provisional
Probab=97.44 E-value=0.0028 Score=67.42 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+.++|.+|+|||+||.++++.+......+.|+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 35788999999999999999999887665556666
No 168
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.44 E-value=0.0032 Score=74.55 Aligned_cols=148 Identities=12% Similarity=0.183 Sum_probs=84.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
..+.|+|..|.|||.|++++++.....+. .+.|+.. ..+..++...+... ....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~~----------~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRDG----------KGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHhc----------cHHHHHHH
Confidence 45889999999999999999998765442 2345521 11222222222111 11223333
Q ss_pred hcCCceEEEEeCCCCH---HHH-H---HHhcCCCCCCCCCEEEEEeCCh--hh-------hhc-CCCeEEEeecCCHHHH
Q 044535 273 LRRKTVLIVLDDVENS---QQL-K---NLAGDHGWFGLGSRIIITSRDK--QV-------LKT-GVDEMYEVEELNCREA 335 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~---~~~-~---~l~~~~~~~~~gs~IiiTTR~~--~v-------~~~-~~~~~~~l~~L~~~ea 335 (1085)
+++ -=+|||||++.. +.+ + .+...+. ..|..|||||... .+ ... ...-+++++..+.+..
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 433 347888999543 111 1 2222221 2366788888753 11 111 4467889999999999
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 044535 336 LQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 336 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 367 (1085)
.+++.+++-...- .--.++.+-|++.+.+.
T Consensus 452 ~aIL~kka~~r~l--~l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 452 IAILRKKAVQEQL--NAPPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHhccCC
Confidence 9999888743321 22245555666655544
No 169
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0016 Score=70.07 Aligned_cols=193 Identities=17% Similarity=0.334 Sum_probs=112.8
Q ss_pred CCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 170 LDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
...+=|.+..+++|.+.... +-+.++=|.+||++|.|||-||++|+++....| +..++.
T Consensus 150 Y~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgS----- 219 (406)
T COG1222 150 YEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGS----- 219 (406)
T ss_pred hhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccH-----
Confidence 34566788888888775532 123467788999999999999999999876544 433221
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh----cCCceEEEEeCCCCHH--------------H--HHHHhcCC
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL----RRKTVLIVLDDVENSQ--------------Q--LKNLAGDH 298 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~--------------~--~~~l~~~~ 298 (1085)
.+.++ ..++ +...+++.. .+.+..|.+|.++... | +-.|+..+
T Consensus 220 ---ElVqK----YiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 220 ---ELVQK----YIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred ---HHHHH----Hhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 11111 1121 222333322 2578899999886431 1 33444455
Q ss_pred CCCCC--CCEEEEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcCCch
Q 044535 299 GWFGL--GSRIIITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 299 ~~~~~--gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glPL 369 (1085)
+-|.+ .-+||..|-..+++ .. ..+..++++.-+.+.-.+.|.-|+-+-.-.. -++ +.+++.+.|.--
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sG 358 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSG 358 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCch
Confidence 44443 46788877644443 32 4678899997788888888988875543222 233 355666666542
Q ss_pred ----HHHHHhhhh--cCC----CHHHHHHHHHhh
Q 044535 370 ----ALKVLGCFL--FGR----SKRDWESALNKL 393 (1085)
Q Consensus 370 ----al~~~g~~L--~~~----~~~~w~~~l~~l 393 (1085)
|+.+=|+++ +.. +.+++..+.++.
T Consensus 359 AdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 359 ADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 233333333 221 456666666554
No 170
>CHL00181 cbbX CbbX; Provisional
Probab=97.41 E-value=0.0056 Score=67.11 Aligned_cols=130 Identities=12% Similarity=0.121 Sum_probs=71.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc-C-cceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ-F-EGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
..+.++|++|+||||+|+.+++..... + ...-|+... . . .+.....+.. .......+++
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----~----~----~l~~~~~g~~------~~~~~~~l~~- 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----R----D----DLVGQYIGHT------APKTKEVLKK- 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec----H----H----HHHHHHhccc------hHHHHHHHHH-
Confidence 457899999999999999998865321 1 111122111 0 0 1112121111 0001112222
Q ss_pred hcCCceEEEEeCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhh---------hcCCCeEEEeecCCH
Q 044535 273 LRRKTVLIVLDDVENS-----------QQLKNLAGDHGWFGLGSRIIITSRDKQVL---------KTGVDEMYEVEELNC 332 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~---------~~~~~~~~~l~~L~~ 332 (1085)
...-+|+||+++.. +..+.+...........+||+++....+. .......+++++++.
T Consensus 121 --a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~ 198 (287)
T CHL00181 121 --AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTP 198 (287)
T ss_pred --ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCH
Confidence 12358899999642 23444554444334456677776543321 113456889999999
Q ss_pred HHHHHHHHHhhcc
Q 044535 333 REALQLFSLNAFK 345 (1085)
Q Consensus 333 ~ea~~Lf~~~a~~ 345 (1085)
+|..+++...+-.
T Consensus 199 ~el~~I~~~~l~~ 211 (287)
T CHL00181 199 EELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877643
No 171
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.41 E-value=0.0021 Score=71.51 Aligned_cols=202 Identities=15% Similarity=0.152 Sum_probs=115.0
Q ss_pred CCCCccccchhHHHHHHhhcc--CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcc--eEEEeehhhhhhhhcHHHHH
Q 044535 169 ALDGLIGIESRVEKVESLLCI--GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEG--CCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~ 244 (1085)
.+..++||+.+++.+.+++.. +....+-+-|.|-+|.|||.+...++.+....... ++++.+.. -.....+.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~s----l~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTS----LTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecc----ccchHHHH
Confidence 467899999999999998864 23456778899999999999999999876554433 35664431 12233445
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcC--CceEEEEeCCCCHHH--HHHHhcCCCCC-CCCCEEEEEeCC------
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRR--KTVLIVLDDVENSQQ--LKNLAGDHGWF-GLGSRIIITSRD------ 313 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IiiTTR~------ 313 (1085)
..+...+......... ..+....+.+...+ .-+|+|+|.+|.... -..+...+.|. -+++|+|+.---
T Consensus 224 ~kI~~~~~q~~~s~~~-~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGT-GMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCch-hHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 5555554222111111 12223445555544 368999999876542 12222223332 257777664321
Q ss_pred -hhhhhc-----CCCeEEEeecCCHHHHHHHHHHhhccCCCC---CCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 314 -KQVLKT-----GVDEMYEVEELNCREALQLFSLNAFKLNHP---TEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 314 -~~v~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
+-+... .....+..++.+.++-.+.|..+.-..... +...+-.+++++...|.+--|+.+.-
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 111111 234677889999999999998876322211 11222233444444444555555443
No 172
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.002 Score=67.21 Aligned_cols=257 Identities=17% Similarity=0.201 Sum_probs=137.8
Q ss_pred cCCCCCccccchhHHHHHHhhcc---CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhh-hhhcHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCI---GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES-AKRGVHR 242 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s-~~~~~~~ 242 (1085)
|....+|||-++-.+++.-.+.. ..+..--|.++|++|.||||||.-+++.+...+.... +..- ...++.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----Gp~leK~gDla- 95 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----GPALEKPGDLA- 95 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----cccccChhhHH-
Confidence 44567899999998888766643 2234667889999999999999999998876554211 1111 111111
Q ss_pred HHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHH-HHHHh-cCCC--------CCCCCCEEE----
Q 044535 243 LQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQ-LKNLA-GDHG--------WFGLGSRII---- 308 (1085)
Q Consensus 243 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~-~~~l~-~~~~--------~~~~gs~Ii---- 308 (1085)
.++.. |+..- .+.+|.+..... .+.++ ++.. -.++++|.|
T Consensus 96 ---aiLt~----------------------Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldL 149 (332)
T COG2255 96 ---AILTN----------------------LEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDL 149 (332)
T ss_pred ---HHHhc----------------------CCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccC
Confidence 11111 22222 334466543211 11111 1111 113444433
Q ss_pred -------EEeCChhhhhc---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhh
Q 044535 309 -------ITSRDKQVLKT---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFL 378 (1085)
Q Consensus 309 -------iTTR~~~v~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L 378 (1085)
-|||--.+... .-.-+.+++..+.+|-.+...+.|..-+ .+-..+-+.+|++...|-|--. .++|
T Consensus 150 ppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIA---nRLL 224 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIA---NRLL 224 (332)
T ss_pred CCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHH---HHHH
Confidence 48886544332 3445678999999999999988773322 1233456789999999999322 2222
Q ss_pred cCCCHHHHHHHHHh--hhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccCCC--CHHHHHHHHhhCCC-CcchhhHHH
Q 044535 379 FGRSKRDWESALNK--LRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFKGD--NRDHVTTILDGCGF-STEIGISVL 453 (1085)
Q Consensus 379 ~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~-~~~~~i~~L 453 (1085)
+ ...++..+... +.....+.....|.+--.+|+...++.+.-+.-.+.|. ..+.+...+..... +.+.+=-.|
T Consensus 225 r--RVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyL 302 (332)
T COG2255 225 R--RVRDFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYL 302 (332)
T ss_pred H--HHHHHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHH
Confidence 1 11222221110 00000112344555555667777777776665554333 34444444332211 122233458
Q ss_pred hhccceEEc
Q 044535 454 IDKCLITVT 462 (1085)
Q Consensus 454 ~~~~Li~~~ 462 (1085)
++.|+|+..
T Consensus 303 iq~gfi~RT 311 (332)
T COG2255 303 IQQGFIQRT 311 (332)
T ss_pred HHhchhhhC
Confidence 888888876
No 173
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.39 E-value=3.5e-05 Score=78.87 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=21.8
Q ss_pred CCCceEEecCCCCch-----hhhHhhhhccccceecccC
Q 044535 591 PENLVELDMHHSNLE-----HLWEEMQHALNLRRIDLSY 624 (1085)
Q Consensus 591 l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~ 624 (1085)
+..+..++||+|.|. .+...+.+-.+|+..+++.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 456777777777665 3444566666777777665
No 174
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.38 E-value=0.0019 Score=77.09 Aligned_cols=173 Identities=17% Similarity=0.219 Sum_probs=93.0
Q ss_pred CCCCccccchhHHHHHHhhc---c-------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLC---I-------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
..++++|.+...+++.+++. . +....+-+.++|++|+|||++|++++......|- .+ .. +
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~---~i-~~---~--- 122 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF---SI-SG---S--- 122 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee---ec-cH---H---
Confidence 34678898887776665443 1 1122345889999999999999999986543321 11 10 0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCCC-
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGWF- 301 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 301 (1085)
.+. ....+.. .......+.......+.+|+||+++... .+..+......+
T Consensus 123 ---~~~----~~~~g~~------~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 ---DFV----EMFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ---HHH----HHHhccc------HHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 000 0000000 0011222333334567899999985531 122333332211
Q ss_pred -CCCCEEEEEeCChhhhh-----c-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 044535 302 -GLGSRIIITSRDKQVLK-----T-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 302 -~~gs~IiiTTR~~~v~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 367 (1085)
..+-.||.||....... . ..+..++++..+.++..++|..+.-...... . .....+++.+.|.
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGF 259 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCC
Confidence 22344555665433221 1 3457789999999999999987764332211 1 1134667777663
No 175
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.002 Score=74.04 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=94.1
Q ss_pred hHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC
Q 044535 179 RVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS 258 (1085)
Q Consensus 179 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~ 258 (1085)
-+.++.+.+... ..++.|.|+-++||||+++.+.....+. .+++...........+.+.....
T Consensus 25 ~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~----------- 87 (398)
T COG1373 25 LLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY----------- 87 (398)
T ss_pred hhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH-----------
Confidence 344445444322 2299999999999999997766655444 44443221111111111111111
Q ss_pred CCCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc-------CCCeEEEeecCC
Q 044535 259 LGASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT-------GVDEMYEVEELN 331 (1085)
Q Consensus 259 ~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~~~~l~~L~ 331 (1085)
.+.-..++..++||.|.....|+.....+...++. +|+||+-+...... +-...+++-||+
T Consensus 88 -----------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 88 -----------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred -----------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111178899999999999998887766655555 89999887665533 456778999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 332 CREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 332 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
..|-..+-...+ .+ ... ...-+-.-..||.|-++..-
T Consensus 156 F~Efl~~~~~~~----~~-~~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 156 FREFLKLKGEEI----EP-SKL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred HHHHHhhccccc----ch-hHH-HHHHHHHHHhCCCcHHHhCc
Confidence 998876543000 00 011 11222233568999877654
No 176
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=1.7e-05 Score=72.84 Aligned_cols=86 Identities=22% Similarity=0.366 Sum_probs=44.2
Q ss_pred CCccEEEccCCCCcccCcccc-CCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCC
Q 044535 798 ERLETLYLAGTPIKELPSSID-HLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLE 876 (1085)
Q Consensus 798 ~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 876 (1085)
..|+..+|++|.+..+|+.+. .++.++.|+|++|. +..+|.. +..++.|+.|+++.|.+...|..+..+.+|-
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-----isdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~ 126 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-----ISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLD 126 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-----hhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence 344444555555555544432 23345555555555 4555544 5555555555555555555555544455555
Q ss_pred EEECCCCCCCcCC
Q 044535 877 ILGLSGNIFESLN 889 (1085)
Q Consensus 877 ~L~L~~n~l~~l~ 889 (1085)
.|+..+|.+..++
T Consensus 127 ~Lds~~na~~eid 139 (177)
T KOG4579|consen 127 MLDSPENARAEID 139 (177)
T ss_pred HhcCCCCccccCc
Confidence 5555555555554
No 177
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.32 E-value=0.0046 Score=65.64 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=28.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+.++|.+|+|||+||.++++.+...-..++++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45788999999999999999999876654455555
No 178
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=0.00023 Score=53.20 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=19.2
Q ss_pred CccEEEccCCCCcccCccccCCCCCCEEEccCCC
Q 044535 799 RLETLYLAGTPIKELPSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 832 (1085)
+|++|++++|.|+.+|..+.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4566666666666665555566666666666555
No 179
>PRK06921 hypothetical protein; Provisional
Probab=97.28 E-value=0.00068 Score=73.32 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=29.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEe
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLE 229 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 229 (1085)
...+.++|..|+|||+||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568899999999999999999987665 44456664
No 180
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00035 Score=68.99 Aligned_cols=98 Identities=29% Similarity=0.395 Sum_probs=52.6
Q ss_pred ccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC--cccCCCCCCCE
Q 044535 800 LETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP--SALTCLSSLEI 877 (1085)
Q Consensus 800 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~ 877 (1085)
...++|++|.+..++ .+..+++|.+|.|++|. ++.+.+....-+++|..|.|.+|++.++- ..+..+|.|++
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-----It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-----ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCc-----ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 344455555444332 23345555555555555 44554444445555666666666655432 23455666666
Q ss_pred EECCCCCCCcCC------CCCCCCCCEeeccc
Q 044535 878 LGLSGNIFESLN------LKPFSCLTHLNVSY 903 (1085)
Q Consensus 878 L~L~~n~l~~l~------~~~l~~L~~L~l~~ 903 (1085)
|.+-+|.++... +-.+|+|+.|+..+
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666666665543 44556666666554
No 181
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.25 E-value=0.0014 Score=80.69 Aligned_cols=168 Identities=18% Similarity=0.236 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-C-----c
Q 044535 150 LVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-F-----E 223 (1085)
Q Consensus 150 ~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F-----~ 223 (1085)
.+++...++..+... ...+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+++++... . .
T Consensus 168 ~l~~~~~~l~~~a~~---g~~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~ 242 (758)
T PRK11034 168 RMENFTTNLNQLARV---GGIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_pred HHHHHHHhHHHHHHc---CCCCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcC
Confidence 455555555443322 223569999999999999887532 2334689999999999999999876432 1 2
Q ss_pred ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh-cCCceEEEEeCCCCH----------HHHH
Q 044535 224 GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL-RRKTVLIVLDDVENS----------QQLK 292 (1085)
Q Consensus 224 ~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~----------~~~~ 292 (1085)
..+|..+. . .++. +. ...+..+.....+.+.+ +.++.+|++|+++.. .+..
T Consensus 243 ~~~~~l~~---------~----~lla---G~--~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~ 304 (758)
T PRK11034 243 CTIYSLDI---------G----SLLA---GT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAA 304 (758)
T ss_pred CeEEeccH---------H----HHhc---cc--chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHH
Confidence 23332111 1 1110 00 00111111111222222 346789999999643 1222
Q ss_pred H-HhcCCCCCCCC-CEEEEEeCChhhhh--------cCCCeEEEeecCCHHHHHHHHHHhh
Q 044535 293 N-LAGDHGWFGLG-SRIIITSRDKQVLK--------TGVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 293 ~-l~~~~~~~~~g-s~IiiTTR~~~v~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
. +.+.+. .| -++|-+|...+... ..--..++++.++.+++.+++....
T Consensus 305 nlLkp~L~---~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 305 NLIKPLLS---SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHHh---CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 2 222221 23 34444444333211 0233578999999999999997543
No 182
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.0028 Score=60.74 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHh
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 56899999999999999999875
No 183
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.012 Score=69.29 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCCccccchhHHHHHHhhccC----CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 170 LDGLIGIESRVEKVESLLCIG----LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
..+.+|.++-.++|.+.|.-. .-.-++++++|++|||||.|++.+++.....|-. +-+-.++ +...++.-.+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvr---DEAEIRGHRR 397 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVR---DEAEIRGHRR 397 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccc---cHHHhccccc
Confidence 356899999999999888532 2334799999999999999999999998877752 2222222 2211111111
Q ss_pred HHHHHHhcCCCCCCCCCccc-hHHHHHhhcCCceEEEEeCCCCHHH------HHHHhcCCCC-----CC--------CCC
Q 044535 246 ELFSRLLEDGDLSLGASGLG-HTFMNTRLRRKTVLIVLDDVENSQQ------LKNLAGDHGW-----FG--------LGS 305 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVLDdv~~~~~------~~~l~~~~~~-----~~--------~gs 305 (1085)
.-++..+-. .+.+ +..+.+.-+++||.|+.... -.+++..++. |. .=|
T Consensus 398 -----------TYIGamPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 398 -----------TYIGAMPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----------cccccCChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 111222111 1111 12334677899999865321 1222221110 00 124
Q ss_pred EEE-EEeCCh-h-hhhc--CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 306 RII-ITSRDK-Q-VLKT--GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 306 ~Ii-iTTR~~-~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
.|+ |||-+. . +... ....++++.+.+++|-.+.-++|..
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 454 555443 1 2221 4567899999999999888877753
No 184
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.22 E-value=0.003 Score=65.61 Aligned_cols=56 Identities=30% Similarity=0.417 Sum_probs=41.2
Q ss_pred cCCCCCccccchhHHHHHHhhcc--CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 167 SGALDGLIGIESRVEKVESLLCI--GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+...+.++|.+.+.+.|.+-... ......-|.+||..|.|||++++++.+++...-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 34557899999999887653210 122345677899999999999999999876544
No 185
>PRK08181 transposase; Validated
Probab=97.19 E-value=0.0013 Score=70.96 Aligned_cols=34 Identities=24% Similarity=0.143 Sum_probs=27.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.-+.++|++|+|||.||.++.+....+...+.|+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~ 140 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT 140 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee
Confidence 4588999999999999999999776554445665
No 186
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.024 Score=62.74 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=63.2
Q ss_pred CCceEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCC
Q 044535 275 RKTVLIVLDDVENSQ--QLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHP 349 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 349 (1085)
+++-++|+|+++... .-.+++..+....+++.+|++|.+. .++.. .-...+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 455688999997653 3555655555445688888887754 33333 456778999999999998886431 1
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 350 TEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 350 ~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
....+..++..++|.|+....+.
T Consensus 187 ---~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 ---SERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ---ChHHHHHHHHHcCCCHHHHHHHh
Confidence 12235678999999998665543
No 187
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.19 E-value=0.01 Score=74.64 Aligned_cols=52 Identities=23% Similarity=0.475 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHhhcc----CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 171 DGLIGIESRVEKVESLLCI----GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
..++|.+...+.|.+++.. .....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3588999888888776542 122345789999999999999999999876555
No 188
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.15 E-value=0.00081 Score=65.23 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=27.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..+.|+|++|+||||+|+.++..+......++++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~ 36 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYI 36 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEE
Confidence 4688999999999999999998776655334444
No 189
>PRK09183 transposase/IS protein; Provisional
Probab=97.14 E-value=0.0016 Score=70.29 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=26.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+.|+|++|+|||+||.+++......-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35677999999999999999988654433334454
No 190
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.0058 Score=73.52 Aligned_cols=53 Identities=23% Similarity=0.288 Sum_probs=42.9
Q ss_pred cCCCCCccccchhHHHHHHhhccCC---CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGL---VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
|...++++|-+..++++..++.... ...+++.|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4556789999999999999886432 2346799999999999999999997553
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.08 E-value=0.0069 Score=71.00 Aligned_cols=153 Identities=14% Similarity=0.211 Sum_probs=82.9
Q ss_pred CCCccccchhHHHHHHhh---cc-----CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHH
Q 044535 170 LDGLIGIESRVEKVESLL---CI-----GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~ 241 (1085)
.+++.|.+...+.+.+.. .. +-...+-|.++|++|.|||.+|+++++.+...| +..+...
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~-------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGK-------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHH--------
Confidence 456788876666555421 10 112356788999999999999999998765433 1111111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHH--------------HHHHhcCCCCCCCCCEE
Q 044535 242 RLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQ--------------LKNLAGDHGWFGLGSRI 307 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~--------------~~~l~~~~~~~~~gs~I 307 (1085)
+.....++. .......++..-...+.+|++|+++..-. +..+...+.....+--|
T Consensus 295 -----l~~~~vGes------e~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 295 -----LFGGIVGES------ESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred -----hcccccChH------HHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 000000000 00011112222234789999999864210 11222212212233345
Q ss_pred EEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhcc
Q 044535 308 IITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAFK 345 (1085)
Q Consensus 308 iiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~ 345 (1085)
|.||.+.... .. ..+..+.++..+.++..++|..+..+
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 5566544322 22 35678899999999999999887644
No 192
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.08 E-value=0.0019 Score=70.64 Aligned_cols=129 Identities=20% Similarity=0.330 Sum_probs=89.4
Q ss_pred cCchhHHHHHHHHhCCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCc--------hhhHHHHHHHHHhcc
Q 044535 7 RSNFTSHLYAALCRAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASS--------SWCLDELLKILECKD 77 (1085)
Q Consensus 7 r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s--------~wcl~El~~i~~~~~ 77 (1085)
-+...+-+.-.|+-+|++||+|- ++..|. +.+.+++.|+.++-+|.|++||-..- .|.-.||.-+++|.+
T Consensus 624 GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWVHKEl~~Afe~~K 702 (832)
T KOG3678|consen 624 GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWVHKELKCAFEHQK 702 (832)
T ss_pred cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHHHHHHHHHHHhcC
Confidence 34466777788899999999997 888776 45699999999999999999987653 488899999999998
Q ss_pred cCCCCcEEEEEEeeecCccccccccchhHHHHHHHHhcCCChhHHHHHHHHHHHHhhcccccccCCCCcHHHHHHHHHHH
Q 044535 78 TTDMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKPKVLKWRAALTQVANLSGWHLDKQLGSEAELVEKIVKD 157 (1085)
Q Consensus 78 ~~~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~al~~~~~~~g~~~~~~~~~e~~~i~~i~~~ 157 (1085)
-++|||-. .|+ |....+.+. +.+..|....|. .-...|+...+.++|.-
T Consensus 703 ------NIiPI~D~-----------aFE---------~Pt~ed~iP---nDirmi~kyNGv--KWvHdYQdA~maKvvRF 751 (832)
T KOG3678|consen 703 ------NIIPIFDT-----------AFE---------FPTKEDQIP---NDIRMITKYNGV--KWVHDYQDACMAKVVRF 751 (832)
T ss_pred ------Ceeeeecc-----------ccc---------CCCchhcCc---HHHHHHHhccCe--eeehhhHHHHHHHHHHH
Confidence 69999832 111 000111111 112223334453 11223677788899998
Q ss_pred Hhhccccccc
Q 044535 158 VLKKLNHTSS 167 (1085)
Q Consensus 158 i~~~l~~~~~ 167 (1085)
+..+++.+.|
T Consensus 752 itGe~nRttp 761 (832)
T KOG3678|consen 752 ITGELNRTTP 761 (832)
T ss_pred HhccccCCCC
Confidence 8888877654
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.04 E-value=0.0033 Score=63.27 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=40.9
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
|....++||-++.++.+.-... +++.+-+.|.||+|+||||-+..+++.+
T Consensus 23 P~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 3445679999999998876654 4567888899999999999999999865
No 194
>PRK06526 transposase; Provisional
Probab=97.02 E-value=0.0015 Score=70.15 Aligned_cols=34 Identities=26% Similarity=0.184 Sum_probs=25.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCF 227 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 227 (1085)
..-+.|+|++|+|||+||.++.......-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 3568899999999999999999876543323334
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.014 Score=65.58 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=85.4
Q ss_pred Cccc-cchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc-c--------------------CcceEEEe
Q 044535 172 GLIG-IESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN-Q--------------------FEGCCFLE 229 (1085)
Q Consensus 172 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~--------------------F~~~~~~~ 229 (1085)
.++| -+..++.+...+..+ .-.+...++|+.|+||||+|+.+++.+-. . ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3556 555666777776533 22466789999999999999999886521 1 11111111
Q ss_pred ehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEE
Q 044535 230 NVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRI 307 (1085)
Q Consensus 230 ~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~I 307 (1085)
.. ...-.+.++ +++...+.. .-..+.+-++|+|+++.. ...++|+..+....+++.+
T Consensus 85 ~~---~~~i~id~i-r~l~~~~~~-----------------~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 85 PD---GQSIKKDQI-RYLKEEFSK-----------------SGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred cc---cccCCHHHH-HHHHHHHhh-----------------CCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 00 000000010 011111000 001234556888998654 3456666666655678888
Q ss_pred EEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHH
Q 044535 308 IITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSL 341 (1085)
Q Consensus 308 iiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~ 341 (1085)
|++|.+.. +... .....+++.+++.++..+.+..
T Consensus 144 Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 144 ILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 88887543 3332 5567899999999999888864
No 196
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.99 E-value=0.0069 Score=76.05 Aligned_cols=174 Identities=15% Similarity=0.232 Sum_probs=92.4
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+++.|.+..++++.+++.. +-...+-|.++|++|+||||||+++++.....| +.+. .......
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcc
Confidence 345688999999998877632 112346688999999999999999998765433 2221 1110000
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhcCCCCC-CC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-------------QLKNLAGDHGWF-GL 303 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~ 303 (1085)
. .+. ........+.......+.+|+||+++... ....+....... ..
T Consensus 252 ~-------------~g~------~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 252 Y-------------YGE------SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred c-------------ccH------HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 0 000 00001112222334566789999985421 122333222211 23
Q ss_pred CCEEEE-EeCChhhhh-c-----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 304 GSRIII-TSRDKQVLK-T-----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 304 gs~Iii-TTR~~~v~~-~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
+..+|| ||....-.. . .....+.++..+.++..+++..+.-+...... .....+++.+.|.-
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~ 381 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFV 381 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCC
Confidence 444555 444332111 1 23456788888999988888755422211111 12356667776654
No 197
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.98 E-value=0.024 Score=70.74 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHHhhcccccccC-----------CCCCccccchhHHHHHHhhcc----CCCceEEEEEEecCCCcHHHH
Q 044535 146 SEAELVEKIVKDVLKKLNHTSSG-----------ALDGLIGIESRVEKVESLLCI----GLVDVHIVGIWGMGGIGKTTI 210 (1085)
Q Consensus 146 ~e~~~i~~i~~~i~~~l~~~~~~-----------~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtL 210 (1085)
.|+..++.-++-+..-....... -....+|.++-.++|.++|.. +.....++.++|++|+||||+
T Consensus 286 ~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl 365 (784)
T PRK10787 286 AEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSL 365 (784)
T ss_pred chHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHH
Confidence 56666665555554432222111 124589999999999887763 112346799999999999999
Q ss_pred HHHHHHHHhccC
Q 044535 211 ARAIFDRIANQF 222 (1085)
Q Consensus 211 A~~v~~~~~~~F 222 (1085)
|+.++......|
T Consensus 366 ~~~ia~~l~~~~ 377 (784)
T PRK10787 366 GQSIAKATGRKY 377 (784)
T ss_pred HHHHHHHhCCCE
Confidence 999998776554
No 198
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.97 E-value=0.00044 Score=84.34 Aligned_cols=125 Identities=20% Similarity=0.286 Sum_probs=93.8
Q ss_pred CCCCcEEEeeCCCCC-CCcchhhc-CCCCccEEEccCCCCc--ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcC
Q 044535 773 LKSLEILYLFGCSKL-EGLPEILE-SMERLETLYLAGTPIK--ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSG 848 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l-~~lp~~l~-~l~~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~ 848 (1085)
-.+|++|+++|.... ...|..++ .+|+|+.|.+++-.+. ++.....++|||..||+++++ ++.+ ..++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-----I~nl--~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-----ISNL--SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-----ccCc--HHHhc
Confidence 467999999885443 23343343 5799999999987654 334456789999999999998 7777 45899
Q ss_pred CCCccEEecCCCCCCCCC--cccCCCCCCCEEECCCCCCCcCC---------CCCCCCCCEeecccc
Q 044535 849 LCSLTELHLNDCNLLELP--SALTCLSSLEILGLSGNIFESLN---------LKPFSCLTHLNVSYC 904 (1085)
Q Consensus 849 l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~l~---------~~~l~~L~~L~l~~c 904 (1085)
+++|+.|.+.+-.+..-. ..+-+|++|+.||+|.......+ -..||+|+.|+.++-
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 999999999887777432 35678999999999985544332 456889999998864
No 199
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.023 Score=58.91 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=98.6
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCC-CCccchHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLG-ASGLGHTFMN 270 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~-~~~~~~~~l~ 270 (1085)
++.+++.++|.-|.|||+++++......+.=-.++.+. ........+...+...+...+..... ..++....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 45679999999999999999965554432222222332 12234445556666665553322211 1111122233
Q ss_pred Hhh-cCCc-eEEEEeCCCCH--HHHHHHh---cCCCCCCCCCEEEEEeC----C----hhhhhc-CCCeE-EEeecCCHH
Q 044535 271 TRL-RRKT-VLIVLDDVENS--QQLKNLA---GDHGWFGLGSRIIITSR----D----KQVLKT-GVDEM-YEVEELNCR 333 (1085)
Q Consensus 271 ~~l-~~kr-~LlVLDdv~~~--~~~~~l~---~~~~~~~~gs~IiiTTR----~----~~v~~~-~~~~~-~~l~~L~~~ 333 (1085)
... +++| +.+++|+..+. ..++.+. ..-..+..--+|+..-. . ...... ....+ |++++++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4677 89999998653 3344333 22111111122333221 1 111111 12233 999999999
Q ss_pred HHHHHHHHhhccCCCCCCCH-HHHHHHHHHHhcCCchHHHHHhh
Q 044535 334 EALQLFSLNAFKLNHPTEDY-MGLSNQVVHYAKGIPLALKVLGC 376 (1085)
Q Consensus 334 ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~glPLal~~~g~ 376 (1085)
+...++..+.-+...+.+-+ .+....|.....|.|.++..++.
T Consensus 204 ~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 204 ETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988765544333333 34566788889999999987764
No 200
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.95 E-value=0.001 Score=65.84 Aligned_cols=79 Identities=28% Similarity=0.309 Sum_probs=56.3
Q ss_pred CCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCccc-CCCCCCCEEECCCCCCCcCC----CCCCC
Q 044535 820 LPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSAL-TCLSSLEILGLSGNIFESLN----LKPFS 894 (1085)
Q Consensus 820 l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~l~~l~----~~~l~ 894 (1085)
+.+...++|++|. +..++. +..++.|..|.|++|+++.+.+.+ ..+++|+.|.|.+|++..+. +..+|
T Consensus 41 ~d~~d~iDLtdNd-----l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-----LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccccceecccccc-----hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 3456778888887 444443 667888888888888888876555 34677888888888877654 56666
Q ss_pred CCCEeeccccc
Q 044535 895 CLTHLNVSYCK 905 (1085)
Q Consensus 895 ~L~~L~l~~c~ 905 (1085)
.|++|.+-+++
T Consensus 114 ~L~~Ltll~Np 124 (233)
T KOG1644|consen 114 KLEYLTLLGNP 124 (233)
T ss_pred ccceeeecCCc
Confidence 77777666654
No 201
>PRK10536 hypothetical protein; Provisional
Probab=96.93 E-value=0.0021 Score=67.56 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=39.9
Q ss_pred CCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH-H-hccCcceE
Q 044535 170 LDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR-I-ANQFEGCC 226 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~ 226 (1085)
...+.++......+..++.. ..+|.+.|++|.|||+||.+++.. + ...|...+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 35577888888888887753 248999999999999999998873 3 44455443
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0021 Score=71.41 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=28.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
..+.++|..|+|||+||.++++.+...-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66889999999999999999997765544566663
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.88 E-value=0.009 Score=75.00 Aligned_cols=172 Identities=14% Similarity=0.220 Sum_probs=93.8
Q ss_pred CCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 170 LDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
...+.|.+...++|.+.+.. +-...+-+.++|++|.|||++|+++++.....|- .+. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-GP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH------
Confidence 35678888888877765531 1122455789999999999999999997654431 111 00
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--------------HHHHHhcCCCCC--C
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--------------QLKNLAGDHGWF--G 302 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~ 302 (1085)
+++....++. .......+...-...+.+|++|+++... .+..++..+... .
T Consensus 522 -------~l~~~~vGes------e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 522 -------EILSKWVGES------EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred -------HHhhcccCcH------HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1111111110 0001112222234567899999986431 123343333211 2
Q ss_pred CCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCCc
Q 044535 303 LGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 303 ~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~glP 368 (1085)
.+--||.||........ ..+..+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 23445556654443321 346788999999999999997665332211 112 245556666543
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.033 Score=61.72 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=62.1
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCC
Q 044535 275 RKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHP 349 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 349 (1085)
+++=++|+|+++.. ....+++..+....+++.+|++|.+. .++.. .....+.+.+++.++..+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 45567889999765 34666766666556788888888765 34333 4467899999999999998876531
Q ss_pred CCCHHHHHHHHHHHhcCCchHH
Q 044535 350 TEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 350 ~~~~~~~~~~i~~~~~glPLal 371 (1085)
.+ ...+..++..++|.|+..
T Consensus 181 ~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 181 AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred cC--hHHHHHHHHHcCCCHHHH
Confidence 11 112556788899999643
No 205
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.027 Score=63.09 Aligned_cols=91 Identities=13% Similarity=0.014 Sum_probs=62.2
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCC
Q 044535 275 RKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHP 349 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 349 (1085)
+++=++|+|+++.. ..-.+++..+....+++.+|.+|.+.+ ++.. .-...+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 45668889998764 346666666655567888888887654 4433 445678999999999998886432 1
Q ss_pred CCCHHHHHHHHHHHhcCCchHHH
Q 044535 350 TEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 350 ~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
...+.+..++..++|.|....
T Consensus 182 --~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 --MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred --CCHHHHHHHHHHcCCCHHHHH
Confidence 112336678999999996443
No 206
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.84 E-value=0.029 Score=60.91 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=26.8
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
++++..++..+ +-|.|.|++|+|||++|++++......
T Consensus 11 ~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 11 TSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred HHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34444555432 345689999999999999999865433
No 207
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.039 Score=60.96 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=62.6
Q ss_pred CceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCC
Q 044535 276 KTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPT 350 (1085)
Q Consensus 276 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 350 (1085)
++=++|+|+++.. ....+++..+....+++.+|++|.+. .++.. .....+.+.+++.+++.+.+.....
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~------ 181 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI------ 181 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC------
Confidence 4457888999765 34666766665556778888777765 44443 5567899999999999998865321
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHH
Q 044535 351 EDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 351 ~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
+ ....++..++|.|+....+
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1356788999999876655
No 208
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0091 Score=67.32 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=77.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
....+.|||..|.|||.|++++.+......+...++.. +...........+ ... ....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~----~se~f~~~~v~a~----~~~----------~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL----TSEDFTNDFVKAL----RDN----------EMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec----cHHHHHHHHHHHH----Hhh----------hHHHHHHh
Confidence 35788999999999999999999988777773333211 1111111222222 111 12334544
Q ss_pred hcCCceEEEEeCCCCHHH----HHHH---hcCCCCCCCCCEEEEEeCChh---------hhhc-CCCeEEEeecCCHHHH
Q 044535 273 LRRKTVLIVLDDVENSQQ----LKNL---AGDHGWFGLGSRIIITSRDKQ---------VLKT-GVDEMYEVEELNCREA 335 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~----~~~l---~~~~~~~~~gs~IiiTTR~~~---------v~~~-~~~~~~~l~~L~~~ea 335 (1085)
. .-=++++||++-... -+.+ ...+. ..|..||+|++... +... ...-++++.+++.+..
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 4 334788899854211 1222 22222 23558999986321 1111 4457899999999999
Q ss_pred HHHHHHhhcc
Q 044535 336 LQLFSLNAFK 345 (1085)
Q Consensus 336 ~~Lf~~~a~~ 345 (1085)
...+.+.+..
T Consensus 250 ~aiL~kka~~ 259 (408)
T COG0593 250 LAILRKKAED 259 (408)
T ss_pred HHHHHHHHHh
Confidence 9999886643
No 209
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.023 Score=68.43 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=106.5
Q ss_pred CCCCCccccchhHHHHHHhhc---c-------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLC---I-------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
....++.|.++..++|++... . +..-++=|.++|++|.|||-||++++-...-.| +...+ +
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF-----~svSG--S-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FSVSG--S-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCce-----eeech--H--
Confidence 456789999988877766543 2 112356788999999999999999997643333 22211 0
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH-----------------HHHHHHhcCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS-----------------QQLKNLAGDHGW 300 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~-----------------~~~~~l~~~~~~ 300 (1085)
++.....+.. ...........-...+..+.+|+++.. ..+..++...+-
T Consensus 379 --------EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 379 --------EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG 444 (774)
T ss_pred --------HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC
Confidence 0111111100 000111122222345677777766421 226677766665
Q ss_pred CCCCCEEEE--EeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 301 FGLGSRIII--TSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 301 ~~~gs~Iii--TTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
+..++.||+ +|...+++.. ..+..+.++.-+.....+.|..|+-+..-. .+..++++ ++...-|.+-|.
T Consensus 445 f~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 445 FETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 555553443 4544444432 456778899999999999999998654433 45556666 888888887554
No 210
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.81 E-value=0.0026 Score=72.37 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=41.9
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc--cCcceEEE
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN--QFEGCCFL 228 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~ 228 (1085)
.++++.+..++.+...|... +.+.++|++|+|||++|+++++.+.. .|..+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 45788888888888888643 46778999999999999999987743 34455555
No 211
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.78 E-value=0.016 Score=59.50 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=99.7
Q ss_pred CCCccccchhHHH---HHHhhccC----CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHH
Q 044535 170 LDGLIGIESRVEK---VESLLCIG----LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHR 242 (1085)
Q Consensus 170 ~~~~vGr~~~~~~---l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~ 242 (1085)
.+++||-+....+ |.+.|... .-..+-|..+|++|.|||.+|+++++..+..|- -+.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk------------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK------------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec-------------
Confidence 4678998877655 45555422 234688999999999999999999987654332 110
Q ss_pred HHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--------------HHHHHHhcCCCC--CCCCCE
Q 044535 243 LQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--------------QQLKNLAGDHGW--FGLGSR 306 (1085)
Q Consensus 243 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--------------~~~~~l~~~~~~--~~~gs~ 306 (1085)
..+++..-.++. ..+..+...+.-+--++.+.+|.++.. +.+.+|+..++. .+.|-.
T Consensus 184 -at~liGehVGdg------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 184 -ATELIGEHVGDG------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred -hHHHHHHHhhhH------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 112222211111 001111112222346889999987543 225566655542 234655
Q ss_pred EEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 044535 307 IIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 307 IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 367 (1085)
.|-.|-+..++.. ....-++..--+++|..+++..++-.-.-+.... .+.++++.+|+
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 5666666655543 3345677888899999999998884433222211 34566666665
No 212
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.73 E-value=0.021 Score=61.43 Aligned_cols=192 Identities=17% Similarity=0.140 Sum_probs=105.8
Q ss_pred Cccccch---hHHHHHHhhccC-CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcc------eEEEeehhhhhhhhcHH
Q 044535 172 GLIGIES---RVEKVESLLCIG-LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEG------CCFLENVREESAKRGVH 241 (1085)
Q Consensus 172 ~~vGr~~---~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~------~~~~~~~~~~s~~~~~~ 241 (1085)
.+||-.. .++++++++... ....+-+.|+|.+|+|||++++++++.....++. ++.+ ......+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~~ 110 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDER 110 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCChH
Confidence 4555433 345566666543 2446778999999999999999999866544431 2333 234456777
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcC-CceEEEEeCCCCHH------H------HHHHhcCCCCCCCCCEEE
Q 044535 242 RLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRR-KTVLIVLDDVENSQ------Q------LKNLAGDHGWFGLGSRII 308 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVLDdv~~~~------~------~~~l~~~~~~~~~gs~Ii 308 (1085)
.+...|+..+...-. ...............++. +--+||+|.+.+.- | ++.|...+ .=+-|.
T Consensus 111 ~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL----~ipiV~ 185 (302)
T PF05621_consen 111 RFYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL----QIPIVG 185 (302)
T ss_pred HHHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc----CCCeEE
Confidence 888888887765431 122223333334455553 44578899996641 1 22332222 234555
Q ss_pred EEeCChhhhhc------CCCeEEEeecCCHHH-HHHHHHHhhc--cCCCC-CCCHHHHHHHHHHHhcCCchHHH
Q 044535 309 ITSRDKQVLKT------GVDEMYEVEELNCRE-ALQLFSLNAF--KLNHP-TEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 309 iTTR~~~v~~~------~~~~~~~l~~L~~~e-a~~Lf~~~a~--~~~~~-~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
|-|++.--+-. .-..++.++....++ ...|+..... .-..+ .-...+++..|...++|+.--+.
T Consensus 186 vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred eccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 65654322211 123455666665543 4444432211 11111 12346788899999999875444
No 213
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.72 E-value=0.002 Score=65.19 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=25.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..-+.|+|..|+|||.||.++.+....+=..+.|+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~ 81 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI 81 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe
Confidence 35688999999999999999998765543345665
No 214
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.72 E-value=0.019 Score=72.69 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=38.7
Q ss_pred CCCccccchhHHHHHHhhccC------CC-ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 170 LDGLIGIESRVEKVESLLCIG------LV-DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...++|.+..++.+...+... .+ ...++.++|+.|+|||++|+.+++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 356889999988887776421 11 2357889999999999999999986643
No 215
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.012 Score=71.21 Aligned_cols=117 Identities=23% Similarity=0.273 Sum_probs=72.6
Q ss_pred CCccccchhHHHHHHhhcc-------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 171 DGLIGIESRVEKVESLLCI-------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
..++|-+..++.+.+.+.. ......+....|+.|||||-||++++..+-..=+..+-+ ++++....+.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsV--- 566 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSV--- 566 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHH---
Confidence 4689999999988776642 123356777899999999999999998764322333333 34444444333
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCce-EEEEeCCCC--HHHHHHHhcCC
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTV-LIVLDDVEN--SQQLKNLAGDH 298 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdv~~--~~~~~~l~~~~ 298 (1085)
+.+.+.+.--++ .++ -..+-+..++++| +|.||.|+. ++-.+-|+..+
T Consensus 567 -----SrLIGaPPGYVG-yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVl 617 (786)
T COG0542 567 -----SRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred -----HHHhCCCCCCce-ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHh
Confidence 333444321122 122 2346677888888 777799965 44456555444
No 216
>PRK08118 topology modulation protein; Reviewed
Probab=96.71 E-value=0.0013 Score=66.02 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=25.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc---cCcceEE
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN---QFEGCCF 227 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~---~F~~~~~ 227 (1085)
.|.|+|++|+||||||+.+++...- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5789999999999999999997643 3555554
No 217
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.71 E-value=0.15 Score=57.53 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=64.3
Q ss_pred CceEEEEeCCCCH-----------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhc-------CCCeEEEeecCCHHHHHH
Q 044535 276 KTVLIVLDDVENS-----------QQLKNLAGDHGWFGLGSRIIITSRDKQVLKT-------GVDEMYEVEELNCREALQ 337 (1085)
Q Consensus 276 kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-------~~~~~~~l~~L~~~ea~~ 337 (1085)
+|-+||+|++... .+|.+.+.. ..=.+||++|-+....+. .+...+.+.-.+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 4678999998332 234443322 345689999887655432 455678899999999999
Q ss_pred HHHHhhccCCCC-------------C-----CCHHHHHHHHHHHhcCCchHHHHHhhhhc
Q 044535 338 LFSLNAFKLNHP-------------T-----EDYMGLSNQVVHYAKGIPLALKVLGCFLF 379 (1085)
Q Consensus 338 Lf~~~a~~~~~~-------------~-----~~~~~~~~~i~~~~~glPLal~~~g~~L~ 379 (1085)
+...+.-..... . .....-....++.+||-=.-|..+++.++
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 998876432110 0 12333345667777887777777777765
No 218
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.67 E-value=0.014 Score=58.18 Aligned_cols=137 Identities=17% Similarity=0.190 Sum_probs=72.0
Q ss_pred ccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc--------------------cCcceEEEeehhhh
Q 044535 175 GIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN--------------------QFEGCCFLENVREE 234 (1085)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--------------------~F~~~~~~~~~~~~ 234 (1085)
|-+...+.+.+++..+ .-...+.++|+.|+||+|+|.++++.+-. .++...|+.... .
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-~ 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-K 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT-S
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc-c
Confidence 4455666777776543 22456789999999999999999985421 122233332110 0
Q ss_pred hhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 044535 235 SAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSR 312 (1085)
Q Consensus 235 s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 312 (1085)
...-.+.++. ++...+.... ..+++=++|+||++.. +...+|+..+......+++|++|+
T Consensus 79 ~~~i~i~~ir-~i~~~~~~~~-----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 79 KKSIKIDQIR-EIIEFLSLSP-----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp SSSBSHHHHH-HHHHHCTSS------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred cchhhHHHHH-HHHHHHHHHH-----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 0011111111 2222111100 1235668899999764 446666665555567899999998
Q ss_pred Chhh-hhc--CCCeEEEeecCC
Q 044535 313 DKQV-LKT--GVDEMYEVEELN 331 (1085)
Q Consensus 313 ~~~v-~~~--~~~~~~~l~~L~ 331 (1085)
+..- ... .-...+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 7653 332 455667776654
No 219
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.66 E-value=0.00022 Score=85.57 Aligned_cols=142 Identities=28% Similarity=0.342 Sum_probs=65.0
Q ss_pred CCCCCEEEccCCcccc--cccccccCCCCCcEEEeeCCCCCCC--cchhhcCCCCccEEEccCCCCcccCccccCCCCCC
Q 044535 749 LTELTVLRLQKCKRLK--RVSSSICKLKSLEILYLFGCSKLEG--LPEILESMERLETLYLAGTPIKELPSSIDHLPQLS 824 (1085)
Q Consensus 749 l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 824 (1085)
+++|+.|.+.+|.... .+-.....+++|++|++++|..... +.....++++|+.|.+..... ++.++
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------c~~l~ 338 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------CPSLT 338 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC---------CccHH
Confidence 5667777766665321 1122234566677777776665422 222334455555544333221 33344
Q ss_pred EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC--cccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeecc
Q 044535 825 LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP--SALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVS 902 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~ 902 (1085)
.+.+..+..... ..+.......++.|+.+.|..|...... ..+..++.|. ..+... ......|+.|++.
T Consensus 339 ~~~l~~~~~~~~--d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~------~~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 339 DLSLSGLLTLTS--DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR------LCRSDSLRVLNLS 409 (482)
T ss_pred HHHHHHhhccCc--hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH------hccCCccceEecc
Confidence 444443331100 1222334556677777777776643322 3344444441 111110 1112226667777
Q ss_pred cccccc
Q 044535 903 YCKRLQ 908 (1085)
Q Consensus 903 ~c~~L~ 908 (1085)
.|...+
T Consensus 410 ~~~~~t 415 (482)
T KOG1947|consen 410 DCRLVT 415 (482)
T ss_pred cCcccc
Confidence 666543
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.005 Score=66.14 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=28.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...-+.++|.+|+|||.||.++.+++...--.+.|+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 445688999999999999999999888433345555
No 221
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.62 E-value=0.029 Score=61.77 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=26.8
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
..++.++|||++|.|||.+|++++......|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 3568999999999999999999999876543
No 222
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.61 E-value=0.0046 Score=65.66 Aligned_cols=49 Identities=24% Similarity=0.321 Sum_probs=37.1
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3455554444456899999999999999999999877666667788753
No 223
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.60 E-value=0.005 Score=65.88 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=56.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCC---CCCCCccc-----
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDL---SLGASGLG----- 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~---~~~~~~~~----- 265 (1085)
-+.++|.|.+|+||||||+.++++++.+|+..+++..+++- ...+..+.+++...-.-.... ...+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 36789999999999999999999998888877777655432 233444444443321000000 00111001
Q ss_pred ---hHHHHHhh--c-CCceEEEEeCCCCH
Q 044535 266 ---HTFMNTRL--R-RKTVLIVLDDVENS 288 (1085)
Q Consensus 266 ---~~~l~~~l--~-~kr~LlVLDdv~~~ 288 (1085)
.-.+.+++ + ++.+|+|+||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11244555 3 78999999998553
No 224
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.56 E-value=0.068 Score=61.78 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=25.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+|.++|.+|+||||+|..++..++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999999877654
No 225
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.54 E-value=0.047 Score=68.44 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=38.2
Q ss_pred CCccccchhHHHHHHhhccC------CC-ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 171 DGLIGIESRVEKVESLLCIG------LV-DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..++|-+..++.+.+.+... .. ...++.++|+.|+|||+||+.+++.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 46889999999887776531 11 235678999999999999999998773
No 226
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.021 Score=65.73 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=86.3
Q ss_pred CCCccccchhHHHHHHhhccC----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhc
Q 044535 170 LDGLIGIESRVEKVESLLCIG----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRG 239 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 239 (1085)
..++=|++..+.++.+++..- -...+-|.++|++|.|||.||++++....-.|-.+.-
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isA------------ 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISA------------ 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecc------------
Confidence 467889999999988876531 1235778899999999999999999987544421110
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--------H-----HHHHhcCCCC---CC-
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--------Q-----LKNLAGDHGW---FG- 302 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--------~-----~~~l~~~~~~---~~- 302 (1085)
-++.+.+.++. .....+.+.+.-..-++++++|+++... + +..|+...+. .+
T Consensus 257 -----peivSGvSGES------EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 257 -----PEIVSGVSGES------EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred -----hhhhcccCccc------HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 11222222221 1111222333345679999999996431 1 2333332211 11
Q ss_pred CCCEEE-E--EeCChhhhhc-----CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 303 LGSRII-I--TSRDKQVLKT-----GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 303 ~gs~Ii-i--TTR~~~v~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
.|-.|| | |+|...+-.. ..++-+.+.--+...-.+.+...+-
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 122233 3 4554333221 3456677777777777777765553
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.046 Score=61.10 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
+.++|+++|++|+||||++..++..+..+=..+.++
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI 275 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFI 275 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEE
Confidence 357999999999999999999998765432234444
No 228
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.50 E-value=0.0023 Score=60.43 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 229
>PRK04132 replication factor C small subunit; Provisional
Probab=96.50 E-value=0.06 Score=66.84 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=89.8
Q ss_pred cCCCcHHHHHHHHHHHH-hccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEE
Q 044535 202 MGGIGKTTIARAIFDRI-ANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLI 280 (1085)
Q Consensus 202 ~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~Ll 280 (1085)
|.++||||+|.++++++ .+.+...+.-.+ .++..++..+. +++......... -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElN---ASd~rgid~IR-~iIk~~a~~~~~---------------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELN---ASDERGINVIR-EKVKEFARTKPI---------------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEe---CCCcccHHHHH-HHHHHHHhcCCc---------------CCCCCEEE
Confidence 78999999999999976 333332222222 23333444333 222222211100 01245799
Q ss_pred EEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHH
Q 044535 281 VLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMG 355 (1085)
Q Consensus 281 VLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 355 (1085)
|+|+++.. .+..+|...........++|++|.+.. +... .....+.+.+++.++-.+.+.+.+-..+- .-..+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e 712 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEE 712 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHH
Confidence 99999875 356666666655556778887776553 3222 45678999999999988887765532221 11245
Q ss_pred HHHHHHHHhcCCchH
Q 044535 356 LSNQVVHYAKGIPLA 370 (1085)
Q Consensus 356 ~~~~i~~~~~glPLa 370 (1085)
....|++.++|-+-.
T Consensus 713 ~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 713 GLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHHcCCCHHH
Confidence 678899999998743
No 230
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.50 E-value=0.032 Score=70.48 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=39.6
Q ss_pred CCccccchhHHHHHHhhcc-------CCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 171 DGLIGIESRVEKVESLLCI-------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++|-+..++.+.+.+.. ......++.++|+.|+|||.||+++++.+...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 5689999999998777642 11234578899999999999999999876433
No 231
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.016 Score=67.39 Aligned_cols=185 Identities=18% Similarity=0.179 Sum_probs=104.5
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc----Cc--ceEEEeehhhhhhhhc-
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ----FE--GCCFLENVREESAKRG- 239 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----F~--~~~~~~~~~~~s~~~~- 239 (1085)
|...+++||-+.-...|...+..+. -...-...|+-|+||||+|+-++..+--. .+ ..|.. +.+...+
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~----Ck~I~~g~ 86 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS----CKEINEGS 86 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh----hHhhhcCC
Confidence 3456788999999999999886542 23445578999999999999998754211 11 11111 0000011
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeC
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL-----RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSR 312 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR 312 (1085)
..++.+ +....+. .+++ ...+.+.. +++.=..|+|.|.-. ..+.+++..+....+.-..|..|+
T Consensus 87 ~~DviE-----iDaASn~---gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 87 LIDVIE-----IDAASNT---GVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred cccchh-----hhhhhcc---ChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 000000 0000000 0111 11222222 234457889999754 558888877765556666677666
Q ss_pred Chhh-hhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 044535 313 DKQV-LKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 313 ~~~v-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 367 (1085)
+.+- ... .....|..+.++.++-...+...+-...- ....+...-|++...|-
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGS 213 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCC
Confidence 5543 332 55678999999999888888766533322 22234445566666553
No 232
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.47 E-value=0.0012 Score=68.25 Aligned_cols=63 Identities=29% Similarity=0.397 Sum_probs=42.5
Q ss_pred hcCCCCccEEecCCC--CCC-CCCcccCCCCCCCEEECCCCCCCcCC----CCCCCCCCEeecccccccc
Q 044535 846 LSGLCSLTELHLNDC--NLL-ELPSALTCLSSLEILGLSGNIFESLN----LKPFSCLTHLNVSYCKRLQ 908 (1085)
Q Consensus 846 ~~~l~~L~~L~Ls~n--~l~-~lp~~l~~l~~L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~~L~ 908 (1085)
+..+++|+.|.+|.| ... .++.....+++|++|++++|.+..+. +..+.+|..|++.+|.-.+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 445667777777777 333 45555566688888888888776543 6667778888888876543
No 233
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.45 E-value=0.0026 Score=61.85 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 044535 197 VGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999988
No 234
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.45 E-value=0.032 Score=63.02 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=79.3
Q ss_pred CccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC---------------------cceEEEee
Q 044535 172 GLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF---------------------EGCCFLEN 230 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F---------------------~~~~~~~~ 230 (1085)
.++|-+....++..+..........+.++|++|+||||+|.++++.+.... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 356677777777777653333344588999999999999999998765332 1122221
Q ss_pred hhhhhhhhc---HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHH--HHHHhcCCCCCCCCC
Q 044535 231 VREESAKRG---VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQ--LKNLAGDHGWFGLGS 305 (1085)
Q Consensus 231 ~~~~s~~~~---~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs 305 (1085)
.+.... .....+++........ ..++.-++|+|+++.... -.++..........+
T Consensus 81 ---~s~~~~~~i~~~~vr~~~~~~~~~~-----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 81 ---PSDLRKIDIIVEQVRELAEFLSESP-----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred ---ccccCCCcchHHHHHHHHHHhccCC-----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 111111 1222222222111110 024677899999987543 455555555556788
Q ss_pred EEEEEeCCh-hhhhc--CCCeEEEeecCC
Q 044535 306 RIIITSRDK-QVLKT--GVDEMYEVEELN 331 (1085)
Q Consensus 306 ~IiiTTR~~-~v~~~--~~~~~~~l~~L~ 331 (1085)
++|++|... .+... .....+++.+.+
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCch
Confidence 888888743 33332 344556666633
No 235
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.43 E-value=0.17 Score=56.62 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=60.7
Q ss_pred CCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCC
Q 044535 275 RKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHP 349 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 349 (1085)
+++-++|+|+++.. .....++..+....+++.+|++|.+. .++.. .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 34557888999764 44677776666666788777777654 44433 445789999999999999987542 1
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 350 TEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 350 ~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
+. ...++..++|.|+....+
T Consensus 206 -~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 223577889999755444
No 236
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.43 E-value=0.0044 Score=63.43 Aligned_cols=126 Identities=22% Similarity=0.267 Sum_probs=58.1
Q ss_pred hhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH-H-hccCcceEEEeehhhhhhhh--cHHHHHHH-------
Q 044535 178 SRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR-I-ANQFEGCCFLENVREESAKR--GVHRLQEE------- 246 (1085)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~-~-~~~F~~~~~~~~~~~~s~~~--~~~~l~~~------- 246 (1085)
.+-....+.|. ...+|.+.|++|.|||.||.+.+-+ + ...|+..++..........- ..-.+.++
T Consensus 7 ~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 7 EEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp HHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred HHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 33344444443 3468999999999999999998753 3 46777777765433211111 11111111
Q ss_pred HHHHHhcCCCCCCCCCccchHHHH---------HhhcC---CceEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeC
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMN---------TRLRR---KTVLIVLDDVEN--SQQLKNLAGDHGWFGLGSRIIITSR 312 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~---------~~l~~---kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR 312 (1085)
+...+..- -........+. ..+++ ...+||+|++.+ ..++..+... .+.||+||++--
T Consensus 83 ~~d~l~~~-----~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD 154 (205)
T PF02562_consen 83 IYDALEEL-----FGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGD 154 (205)
T ss_dssp HHHHHTTT-----S-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-
T ss_pred HHHHHHHH-----hChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecC
Confidence 11111100 00011111111 13344 356899999965 5678887765 468999999866
Q ss_pred Chh
Q 044535 313 DKQ 315 (1085)
Q Consensus 313 ~~~ 315 (1085)
..+
T Consensus 155 ~~Q 157 (205)
T PF02562_consen 155 PSQ 157 (205)
T ss_dssp ---
T ss_pred cee
Confidence 443
No 237
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.41 E-value=0.011 Score=65.13 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=28.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.+-+.|+|..|+|||.||.++++.+...-..+.|+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~ 190 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL 190 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 45688999999999999999999876544445555
No 238
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.41 E-value=0.0019 Score=67.58 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=28.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
-.++|+|..|.|||||++.+.......|..++.+
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 3577999999999999999999899999665554
No 239
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.41 E-value=0.00026 Score=84.94 Aligned_cols=214 Identities=29% Similarity=0.326 Sum_probs=103.3
Q ss_pred CCCcccEEEccCCCCCCc--cCCcccCCCCccEEEeccc-CCCccCCCCCCCccccCcccccccccCcccccCCCCCEEE
Q 044535 680 SLGKLVVLRLDNCRRLKN--LPSSICNLTSLTELALHGC-SNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLR 756 (1085)
Q Consensus 680 ~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~-~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~ 756 (1085)
.++.|+.|.+.+|..+.. +-.....++.|+.|++++| ......+. ..+.....+++|+.|+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----------------~~~~~~~~~~~L~~l~ 249 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL----------------LLLLLLSICRKLKSLD 249 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh----------------HhhhhhhhcCCcCccc
Confidence 366777777777766554 2233445777777777763 11111110 0111233457777777
Q ss_pred ccCCcccccc-cccc-cCCCCCcEEEeeCCCCC--CCcchhhcCCCCccEEEccCCCCc---ccCccccCCCCCCEEEcc
Q 044535 757 LQKCKRLKRV-SSSI-CKLKSLEILYLFGCSKL--EGLPEILESMERLETLYLAGTPIK---ELPSSIDHLPQLSLLSLE 829 (1085)
Q Consensus 757 L~~~~~~~~l-~~~l-~~l~~L~~L~L~~~~~l--~~lp~~l~~l~~L~~L~L~~~~i~---~lp~~l~~l~~L~~L~L~ 829 (1085)
++.|...... -..+ ..+++|+.|.+.+|..+ ..+-.....+++|++|+|++|... .+.....++++|+.|.+.
T Consensus 250 l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 250 LSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 7777642221 1112 22667777777766642 223344455666777777766532 122223345555554443
Q ss_pred CCCchhhhccCCchhhhcCCCCccEEecCCCCCC----CCCcccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeeccccc
Q 044535 830 NCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL----ELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 830 ~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~----~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~ 905 (1085)
.+.. ++.++.+.++++... ........++.|+.+.+..+....... .+.+.+|+
T Consensus 330 ~~~~---------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------~~~l~gc~ 387 (482)
T KOG1947|consen 330 SLNG---------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGL-------ELSLRGCP 387 (482)
T ss_pred hcCC---------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcch-------HHHhcCCc
Confidence 3331 223333333332221 011124556666666666654333221 34555666
Q ss_pred cc-cccCCC-CCCCCCCeEEEeCCCCCC
Q 044535 906 RL-QSLQEF-PSPLRLVNLQAHECIYLE 931 (1085)
Q Consensus 906 ~L-~~lp~l-~~~~~L~~L~i~~c~~L~ 931 (1085)
.+ ..+... .....++.|++..|....
T Consensus 388 ~l~~~l~~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 388 NLTESLELRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred ccchHHHHHhccCCccceEecccCcccc
Confidence 55 222221 111115577777776553
No 240
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.026 Score=66.07 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=83.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhh-hhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREE-SAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
.+-|.|.|+.|+|||+||+++++.+... ..+++.-+.+. .....+..+|+.+- ..+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~--~~~hv~~v~Cs~l~~~~~e~iQk~l~------------------~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKD--LIAHVEIVSCSTLDGSSLEKIQKFLN------------------NVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccc--cceEEEEEechhccchhHHHHHHHHH------------------HHHHHH
Confidence 4568899999999999999999977633 23333333221 22233555554432 223445
Q ss_pred hcCCceEEEEeCCCCHHH---------------HHHHh----cCCCCCCCCCEE--EEEeCChhhhhc------CCCeEE
Q 044535 273 LRRKTVLIVLDDVENSQQ---------------LKNLA----GDHGWFGLGSRI--IITSRDKQVLKT------GVDEMY 325 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~---------------~~~l~----~~~~~~~~gs~I--iiTTR~~~v~~~------~~~~~~ 325 (1085)
+...+-+|||||++-... +..+. .... ..+.+| |-|.....-... -.....
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~--~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYL--KRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH--ccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 667889999999853211 11111 1111 124443 333333222211 223456
Q ss_pred EeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcC-CchHHHHH
Q 044535 326 EVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKG-IPLALKVL 374 (1085)
Q Consensus 326 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~ 374 (1085)
.++.+...+..++++... ....... ..+...-+..+|+| .|.-+.++
T Consensus 569 ~L~ap~~~~R~~IL~~~~-s~~~~~~-~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIF-SKNLSDI-TMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred ecCCcchhHHHHHHHHHH-Hhhhhhh-hhHHHHHHHHhcCCccchhHHHH
Confidence 788888888877776443 2222111 12222236667766 44444443
No 241
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.04 Score=64.38 Aligned_cols=154 Identities=18% Similarity=0.268 Sum_probs=86.5
Q ss_pred CCccccchhHHHHHHhhc-----------cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhc
Q 044535 171 DGLIGIESRVEKVESLLC-----------IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRG 239 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 239 (1085)
+++=|.++...+|.+... .+....+-|..+|++|.|||++|+++++.-+-.|-.+ . +
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k--g------- 501 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K--G------- 501 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---c--C-------
Confidence 344457776666664432 1224567888999999999999999999876666422 0 0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhcCCCCCCCCCE
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-------------QLKNLAGDHGWFGLGSR 306 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~ 306 (1085)
.+++....++. .......+.+.-+-.+.++.||.++... .+..++...+-......
T Consensus 502 -----pEL~sk~vGeS------Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 502 -----PELFSKYVGES------ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -----HHHHHHhcCch------HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 01111111111 0001111122222345778888775432 24555555554444444
Q ss_pred EEE---EeCChhhhhc-----CCCeEEEeecCCHHHHHHHHHHhhccCC
Q 044535 307 III---TSRDKQVLKT-----GVDEMYEVEELNCREALQLFSLNAFKLN 347 (1085)
Q Consensus 307 Iii---TTR~~~v~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 347 (1085)
|+| |-|...+-.. ..+..+.++.-+.+...++|+.++-+..
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC
Confidence 444 3343333222 3567888888888888999998885443
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.33 E-value=0.0093 Score=59.51 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=27.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999987766545566664
No 243
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.32 E-value=0.034 Score=70.83 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=39.8
Q ss_pred CCccccchhHHHHHHhhccC------CC-ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 171 DGLIGIESRVEKVESLLCIG------LV-DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++|.+..++.+...+... .. ...++.++|+.|+|||++|+.++......
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~ 622 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD 622 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 56899999999988877532 11 24577899999999999999999876443
No 244
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0028 Score=65.65 Aligned_cols=114 Identities=28% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCCCCEEEccCCcccccccccccCCCCCcEEEeeCC--CCCCCcchhhcCCCCccEEEccCCCCcccC--ccccCCCCCC
Q 044535 749 LTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGC--SKLEGLPEILESMERLETLYLAGTPIKELP--SSIDHLPQLS 824 (1085)
Q Consensus 749 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~--~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp--~~l~~l~~L~ 824 (1085)
+..|+.|.+.++..+.. ..+..|++|++|.++.| .....++.....+|+|++|++++|.|..+. ..+..+++|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 44555555555544322 12335677777777777 444555555556677888888887776421 1245566677
Q ss_pred EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC
Q 044535 825 LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP 866 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp 866 (1085)
.|++.+|.-.. +..--...+.-+++|+.|+-....-.+.|
T Consensus 120 ~Ldl~n~~~~~--l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 120 SLDLFNCSVTN--LDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hhhcccCCccc--cccHHHHHHHHhhhhccccccccCCcccc
Confidence 77777776111 11111223444555555554444333333
No 245
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.01 Score=69.36 Aligned_cols=154 Identities=18% Similarity=0.210 Sum_probs=88.1
Q ss_pred CCccccchhHHHHHHhhcc----CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCI----GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
.+.+|+++-.++|.+++.- ++-+-++++.+|++|||||.+|+.++..+...|. + ..++...+...+..-.+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-R---fSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-R---FSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-E---EeccccccHHhhccccee
Confidence 4588999999999888753 3445689999999999999999999998877664 2 223333322222211111
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHhhc---CCceEEEEeCCCCHHH------HHHHhcCCC-------------CCCCC
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTRLR---RKTVLIVLDDVENSQQ------LKNLAGDHG-------------WFGLG 304 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVLDdv~~~~~------~~~l~~~~~-------------~~~~g 304 (1085)
-++.. ...+-+.|+ -..-|+.||.|+.... -.+++..++ -.-.=
T Consensus 487 -----------YVGAM---PGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 487 -----------YVGAM---PGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred -----------eeccC---ChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccch
Confidence 11111 122233332 3456788899875421 111211110 00013
Q ss_pred CEEEE-EeCChhhhhc-----CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 305 SRIII-TSRDKQVLKT-----GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 305 s~Iii-TTR~~~v~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
|+|+. .|-+. +... ....++++.+...+|-...-.++.
T Consensus 553 SkVLFicTAN~-idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANV-IDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccc-cccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 67764 33322 1111 345688999999998887776665
No 246
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.31 E-value=0.0087 Score=63.19 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=36.4
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455556444345689999999999999999999987755545567774
No 247
>PRK14974 cell division protein FtsY; Provisional
Probab=96.31 E-value=0.053 Score=60.43 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
+..+|+++|++|+||||++.+++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999998876554
No 248
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.26 E-value=0.0034 Score=69.46 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=41.4
Q ss_pred CCccccchhHHHHHHhhccC----CCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 171 DGLIGIESRVEKVESLLCIG----LVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+.++|.++.++++.+++... ....++++++|++|.||||||+++++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 48999999999998887542 234588999999999999999999986643
No 249
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.26 E-value=0.052 Score=55.54 Aligned_cols=118 Identities=18% Similarity=0.267 Sum_probs=69.9
Q ss_pred CCCCccccchhHHHHHHhhc--cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 169 ALDGLIGIESRVEKVESLLC--IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
.-..++|.+...+.+.+-.. ...-..--|.+||.-|.||+.|++++.+.+......-+=|. . .+-..+..+.++
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~---k-~dl~~Lp~l~~~ 133 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD---K-EDLATLPDLVEL 133 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc---H-HHHhhHHHHHHH
Confidence 34679999998888755321 11223456789999999999999999999888776532221 0 111112221111
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCC---CHHHHHHHhcCCC---CCCCCCEEEEEeCCh
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVE---NSQQLKNLAGDHG---WFGLGSRIIITSRDK 314 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~---~~~~~~~l~~~~~---~~~~gs~IiiTTR~~ 314 (1085)
+ +.+.+|+.|..||.. .....+.+...+. ...|...++..|.++
T Consensus 134 L------------------------r~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 134 L------------------------RARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred H------------------------hcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1 123589999999982 2333444444332 233556666666554
No 250
>PHA00729 NTP-binding motif containing protein
Probab=96.26 E-value=0.018 Score=59.75 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+...|.|+|.+|+||||||.++++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999998764
No 251
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.023 Score=64.12 Aligned_cols=128 Identities=19% Similarity=0.182 Sum_probs=71.6
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT 271 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 271 (1085)
.....+.+.|++|+|||+||..++.. ..|+.+=.+. .. .--++..-.+-. .......+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe-~miG~sEsaKc~----------------~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PE-DMIGLSESAKCA----------------HIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hH-HccCccHHHHHH----------------HHHHHHHH
Confidence 34667789999999999999998864 6788543331 10 000111000000 00112223
Q ss_pred hhcCCceEEEEeCCCCHHHH------------HHHhcCCCCC-CCCCEEE--EEeCChhhhhc-----CCCeEEEeecCC
Q 044535 272 RLRRKTVLIVLDDVENSQQL------------KNLAGDHGWF-GLGSRII--ITSRDKQVLKT-----GVDEMYEVEELN 331 (1085)
Q Consensus 272 ~l~~kr~LlVLDdv~~~~~~------------~~l~~~~~~~-~~gs~Ii--iTTR~~~v~~~-----~~~~~~~l~~L~ 331 (1085)
.-+..=-.||+||++..-+| ++|...+... ..|-|.+ -||..+.++.. .-...|.|+.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 33455668999999776543 3332222211 2344444 46666677654 345678999998
Q ss_pred H-HHHHHHHHH
Q 044535 332 C-REALQLFSL 341 (1085)
Q Consensus 332 ~-~ea~~Lf~~ 341 (1085)
. ++..+.+..
T Consensus 674 ~~~~~~~vl~~ 684 (744)
T KOG0741|consen 674 TGEQLLEVLEE 684 (744)
T ss_pred chHHHHHHHHH
Confidence 7 677777654
No 252
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.21 E-value=0.0068 Score=63.57 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=34.9
Q ss_pred hhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 186 LLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 186 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
+|..+-..-.++.|+|++|+|||++|.+++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 343333456899999999999999999998877666667888854
No 253
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.19 E-value=0.024 Score=70.15 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHhhccC-------CCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 171 DGLIGIESRVEKVESLLCIG-------LVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..++|-+..++.|...+... ......+.++|++|+|||++|+.++....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999888876521 12245788999999999999999998774
No 254
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.18 E-value=0.00022 Score=73.49 Aligned_cols=96 Identities=27% Similarity=0.327 Sum_probs=57.3
Q ss_pred CCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc--ccCCCCC
Q 044535 797 MERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS--ALTCLSS 874 (1085)
Q Consensus 797 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~ 874 (1085)
+.+.++|+..||.+..+. ....++.|+.|.|+-|. ++.+.+ +..|.+|++|+|..|.+.++-+ -+.++++
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-----IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-----ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-----cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 445666777777766553 23456677777777766 555544 5666667777776666665432 2456666
Q ss_pred CCEEECCCCCCCcCC--------CCCCCCCCEee
Q 044535 875 LEILGLSGNIFESLN--------LKPFSCLTHLN 900 (1085)
Q Consensus 875 L~~L~L~~n~l~~l~--------~~~l~~L~~L~ 900 (1085)
|+.|-|..|.-..-. +..||+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666665543321 44556666554
No 255
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.25 Score=56.25 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 256
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.13 E-value=0.17 Score=58.09 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+|.++|..|+||||+|.+++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999998866544
No 257
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.12 E-value=0.019 Score=65.05 Aligned_cols=49 Identities=29% Similarity=0.388 Sum_probs=35.8
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
.++.++|..+-..-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445555433334578999999999999999999987766555667764
No 258
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.11 E-value=0.076 Score=62.92 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=40.1
Q ss_pred HHHHhhcCCceEEEEeCC------CCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEeec
Q 044535 268 FMNTRLRRKTVLIVLDDV------ENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVEE 329 (1085)
Q Consensus 268 ~l~~~l~~kr~LlVLDdv------~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~~ 329 (1085)
.+...+-.++=+||||.- +..+.++..+..++ +.||+.|-|+......+..++.+.+
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhhcceEEEEcC
Confidence 345556678889999954 44555665555543 4588889999988875677777765
No 259
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.11 E-value=0.018 Score=59.52 Aligned_cols=109 Identities=16% Similarity=0.178 Sum_probs=62.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe-ehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE-NVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~-~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
.+|.|+|+.|.||||++..+...+.......++.. +..+... ... ..+ ........ +.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~~~----~~~----i~q~~vg~-~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-ESK----RSL----INQREVGL-DTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-cCc----cce----eeecccCC-CccCHHHHHHHHh
Confidence 46889999999999999998887765544444432 2111000 000 000 00000110 1223345677778
Q ss_pred cCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 044535 274 RRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQV 316 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 316 (1085)
+..+=.+++|.+.+.+.+....... ..|..++.|+-...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 7778899999998887766544332 245567777665443
No 260
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0062 Score=58.25 Aligned_cols=38 Identities=29% Similarity=0.467 Sum_probs=29.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc-Cc-ceEEEeehh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ-FE-GCCFLENVR 232 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~-~~~~~~~~~ 232 (1085)
--|+|.||+|+||||+++.+++.++.. |. +.+|...++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 468899999999999999999988766 65 345555444
No 261
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.09 E-value=0.024 Score=61.59 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=28.4
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...++++++|++|+||||++..++..+...-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3468999999999999999999998776553334444
No 262
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.07 E-value=0.012 Score=57.64 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=63.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHH--h--cCC-CCCCCCCc------
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRL--L--EDG-DLSLGASG------ 263 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~--~--~~~-~~~~~~~~------ 263 (1085)
..|-|++..|.||||+|...+-+...+=..+.++.-+... ...+-....+.+- .+ . +.. .....+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHH
Confidence 3677888889999999999988765554445554322221 1122222222220 00 0 000 00000010
Q ss_pred -cchHHHHHhhcC-CceEEEEeCCCCHH-----HHHHHhcCCCCCCCCCEEEEEeCChhhhhc-CCCeEEEee
Q 044535 264 -LGHTFMNTRLRR-KTVLIVLDDVENSQ-----QLKNLAGDHGWFGLGSRIIITSRDKQVLKT-GVDEMYEVE 328 (1085)
Q Consensus 264 -~~~~~l~~~l~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~l~ 328 (1085)
......++.+.. +-=|||||++-..- +.+.+...+....++..||+|.|+..-.-. ..+.+.++.
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~VTEm~ 153 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLVTEMR 153 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCceeeecc
Confidence 112223344443 44599999984331 122222222223457899999997532211 344444444
No 263
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.05 E-value=0.047 Score=65.43 Aligned_cols=49 Identities=31% Similarity=0.548 Sum_probs=38.6
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+.++|.+..++.+...+... ...-|.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44567999999999998776433 23456799999999999999998743
No 264
>PRK06696 uridine kinase; Validated
Probab=96.05 E-value=0.009 Score=63.24 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=33.6
Q ss_pred cchhHHHHHHhhcc-CCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 176 IESRVEKVESLLCI-GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 176 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
|++.+++|.+.+.. ..+...+|+|.|.+|.||||+|+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34445555554432 23467899999999999999999999987544
No 265
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.04 E-value=0.1 Score=66.34 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCccccchhHHHHHHhhccC------C-CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIG------L-VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
..++|-+..++.+...+... . .....+.++|+.|+|||+||+.+++.+-..-...+.+ +..+....+.+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~- 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSK- 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHH-
Confidence 56899999999987776421 1 1234567899999999999999998764322222222 2222222222221
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCc-eEEEEeCCCCH--HHHHHHhcCC
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKT-VLIVLDDVENS--QQLKNLAGDH 298 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr-~LlVLDdv~~~--~~~~~l~~~~ 298 (1085)
+.+.. ......++ ...+.+.++.++ -+++||+++.. +.++.|...+
T Consensus 587 -------l~g~~-~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 587 -------LIGSP-PGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred -------hcCCC-CcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 11211 00101111 123455555555 58889999754 3355555443
No 266
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.19 Score=56.07 Aligned_cols=84 Identities=18% Similarity=0.133 Sum_probs=48.5
Q ss_pred ceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCC
Q 044535 277 TVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTE 351 (1085)
Q Consensus 277 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 351 (1085)
+-++|+|+++.. ..-..+...+.....+..+|++|.+.. +... .....+.+.+++.+++.+.+.... ...
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCc
Confidence 334456877653 333333333322234677777877654 3332 445778999999999998886532 111
Q ss_pred CHHHHHHHHHHHhcCCchH
Q 044535 352 DYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 352 ~~~~~~~~i~~~~~glPLa 370 (1085)
. ...+..++|-|+.
T Consensus 189 -~----~~~l~~~~g~p~~ 202 (325)
T PRK08699 189 -P----EERLAFHSGAPLF 202 (325)
T ss_pred -H----HHHHHHhCCChhh
Confidence 1 1123567898854
No 267
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.00038 Score=71.79 Aligned_cols=99 Identities=27% Similarity=0.317 Sum_probs=73.2
Q ss_pred CCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCch-hhhcCCCC
Q 044535 773 LKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPL-ALLSGLCS 851 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~-~~~~~l~~ 851 (1085)
+.+.+.|++.||..... ..+..|+.|+.|.|+-|.|+.+. .+..+++|++|+|..|. +..+.. ..+.++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-----I~sldEL~YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-----IESLDELEYLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-----cccHHHHHHHhcCch
Confidence 56678888888865432 35667899999999999998774 47788999999999887 444432 34778999
Q ss_pred ccEEecCCCCCCC-CC-----cccCCCCCCCEEE
Q 044535 852 LTELHLNDCNLLE-LP-----SALTCLSSLEILG 879 (1085)
Q Consensus 852 L~~L~Ls~n~l~~-lp-----~~l~~l~~L~~L~ 879 (1085)
|+.|.|..|.-.. -+ ..+.-||+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999998886552 11 2356678888876
No 268
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.97 E-value=0.016 Score=56.60 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=58.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
-.+++|.|..|.|||||++.++.... ...+.+++.......--.. ...-....-.+.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~-------------------lS~G~~~rv~laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ-------------------LSGGEKMRLALAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc-------------------CCHHHHHHHHHHHHH
Confidence 36899999999999999999986432 2344444422100000000 000001112344555
Q ss_pred cCCceEEEEeCCC---CHH---HHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEe
Q 044535 274 RRKTVLIVLDDVE---NSQ---QLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEV 327 (1085)
Q Consensus 274 ~~kr~LlVLDdv~---~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l 327 (1085)
..++-++++|+.. |.. .+..+.... +..||++|.+......-.+.++.+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~~d~v~~l 140 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQVATKIIEL 140 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHhCCEEEEE
Confidence 6677789999863 222 232333222 246888888766554334455554
No 269
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.96 E-value=0.11 Score=61.34 Aligned_cols=198 Identities=14% Similarity=0.122 Sum_probs=115.5
Q ss_pred CCCCccccchhHHHHHHhhccC--C-CceEEEEEEecCCCcHHHHHHHHHHHHh--------ccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCIG--L-VDVHIVGIWGMGGIGKTTIARAIFDRIA--------NQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~F~~~~~~~~~~~~s~~ 237 (1085)
.+..+-+|+.+..+|...+..- . .....+-|.|.+|.|||..+..|.+.+. ..|+ .+.+.. -.-
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINg----m~l 468 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEING----LRL 468 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcc----eee
Confidence 5667889999999999887531 2 3345889999999999999999998543 2354 233322 223
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc-----CCceEEEEeCCCCHHH--HHHHhcCCCCC-CCCCEEEE
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR-----RKTVLIVLDDVENSQQ--LKNLAGDHGWF-GLGSRIII 309 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~Iii 309 (1085)
....++...|...+.+... ....+.+.+..+.. .+..+|++|+++..-. -+-+...+.|. .++|+++|
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvv 544 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVV 544 (767)
T ss_pred cCHHHHHHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEE
Confidence 4567788888888777652 22334455555554 4678888898865422 12222233342 36888876
Q ss_pred EeC-Ch-hh----hh-----cCCCeEEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 310 TSR-DK-QV----LK-----TGVDEMYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 310 TTR-~~-~v----~~-----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
.+= +. .. +. .-....+...+.+.++-.+....+..+..... ...+-++++|+.-.|..-.|+.+.-
T Consensus 545 i~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 545 IAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred EEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 542 11 11 11 01234566777777777777665543332111 2222344455555555555555443
No 270
>PRK07667 uridine kinase; Provisional
Probab=95.95 E-value=0.014 Score=60.13 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=32.5
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
++.+.+.+....+...+|||.|.+|.||||+|+.+...+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345555555445566899999999999999999999877543
No 271
>PRK04296 thymidine kinase; Provisional
Probab=95.93 E-value=0.011 Score=60.83 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcC-CCCCCCCCccchHHHHHhh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLED-GDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~-~~~~~~~~~~~~~~l~~~l 273 (1085)
.++.|+|..|.||||+|..++.+...+...++++.. ......+...+ ...+... .........+....+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~--~~d~~~~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP--AIDDRYGEGKV----VSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec--cccccccCCcE----ecCCCCcccceEeCChHHHHHHHHh-h
Confidence 467899999999999999999887665544444411 00111111111 1111100 00001111122222333 2
Q ss_pred cCCceEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 044535 274 RRKTVLIVLDDVEN--SQQLKNLAGDHGWFGLGSRIIITSRDKQ 315 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 315 (1085)
.++.-+||+|.+.- .+++..+...+. ..|-.||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23556899999854 344544443322 35789999999854
No 272
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.93 E-value=0.0069 Score=67.35 Aligned_cols=105 Identities=17% Similarity=0.084 Sum_probs=57.1
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcce-EEEeehhhhhhhhcHHHHHHHHHHHHhcCC-CCC
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGC-CFLENVREESAKRGVHRLQEELFSRLLEDG-DLS 258 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~-~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~-~~~ 258 (1085)
.++.+++..-.. -+.++|+|.+|+|||||++.+++.+..+.+.+ +++..+.+ ....+.++.+.+...+.... +..
T Consensus 121 ~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgE--R~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 121 MRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDE--RPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred HhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC--CCCCHHHHHHHHhhhEEeecCCCC
Confidence 345555543222 24568999999999999999999887655322 23322322 23345566666655433221 000
Q ss_pred CCC---CccchHHHHHhh--cCCceEEEEeCCCCH
Q 044535 259 LGA---SGLGHTFMNTRL--RRKTVLIVLDDVENS 288 (1085)
Q Consensus 259 ~~~---~~~~~~~l~~~l--~~kr~LlVLDdv~~~ 288 (1085)
... .......+.+++ ++++++||+|++...
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 000 000011122222 479999999998654
No 273
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.91 E-value=0.058 Score=66.27 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=71.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
+-|.|+|++|.||||+|+.++.+....|- .+. ... +... ..+.. .......+.....
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~~~---------~~~~----~~g~~------~~~~~~~f~~a~~ 242 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-GSD---------FVEM----FVGVG------ASRVRDMFEQAKK 242 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-hHH---------hHHh----hhccc------HHHHHHHHHHHHh
Confidence 34889999999999999999987654431 121 100 0000 00000 0011122222333
Q ss_pred CCceEEEEeCCCCHH----------------HHHHHhcCCCCCC--CCCEEEEEeCChhhhhc------CCCeEEEeecC
Q 044535 275 RKTVLIVLDDVENSQ----------------QLKNLAGDHGWFG--LGSRIIITSRDKQVLKT------GVDEMYEVEEL 330 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~--~gs~IiiTTR~~~v~~~------~~~~~~~l~~L 330 (1085)
..+.+|++|+++... .+..++.....+. .+.-+|.||...+.+.. ..+..+.++..
T Consensus 243 ~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~P 322 (644)
T PRK10733 243 AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLP 322 (644)
T ss_pred cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCC
Confidence 467899999986541 1333433333222 23444556765544332 24577889999
Q ss_pred CHHHHHHHHHHhhcc
Q 044535 331 NCREALQLFSLNAFK 345 (1085)
Q Consensus 331 ~~~ea~~Lf~~~a~~ 345 (1085)
+.++..+++..+.-+
T Consensus 323 d~~~R~~Il~~~~~~ 337 (644)
T PRK10733 323 DVRGREQILKVHMRR 337 (644)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999998877643
No 274
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.87 E-value=0.29 Score=56.50 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999999988765
No 275
>PRK10867 signal recognition particle protein; Provisional
Probab=95.82 E-value=0.19 Score=58.05 Aligned_cols=29 Identities=24% Similarity=0.382 Sum_probs=25.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+|.++|++|+||||.|..++..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36899999999999999999998877655
No 276
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.82 E-value=0.015 Score=59.71 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
++++.++|+.|+||||.+.+++.+.+.+-..+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~li 35 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALI 35 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceee
Confidence 36899999999999999999998776663334444
No 277
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.76 E-value=0.031 Score=59.42 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=35.3
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------cceEEEee
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------EGCCFLEN 230 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~ 230 (1085)
.+.++|..+-..-.++.|+|.+|+|||+||..++....... ..++|+..
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 34455544444567999999999999999999987655444 55677753
No 278
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.75 E-value=0.17 Score=58.61 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=26.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh--ccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA--NQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~--~~F~~~~~~ 228 (1085)
.++++++|++|+||||++..++.... ..-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li 257 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALI 257 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 36899999999999999999987665 333344555
No 279
>PRK06762 hypothetical protein; Provisional
Probab=95.74 E-value=0.039 Score=55.36 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+|.|.|++|+||||+|+.+++++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999877
No 280
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.73 E-value=0.099 Score=56.23 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=92.4
Q ss_pred CCCccccchhHHHHHHhhccC--CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhh--hhhhcHHHHHH
Q 044535 170 LDGLIGIESRVEKVESLLCIG--LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREE--SAKRGVHRLQE 245 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~--s~~~~~~~l~~ 245 (1085)
...++|-.++..++..++... -+...-|.|+|+.|.|||+|......+ .+.|.-...+....+. +++-.+..+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 456899999999998888531 123345779999999999998876654 2333333333222221 23334555555
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhc------CCceEEEEeCCCCH----HH--HHHHhc-CCCCCCCCCEEEEEeC
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLR------RKTVLIVLDDVENS----QQ--LKNLAG-DHGWFGLGSRIIITSR 312 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~------~kr~LlVLDdv~~~----~~--~~~l~~-~~~~~~~gs~IiiTTR 312 (1085)
++-.++.... ....+..+....+-..|+ +-++.+|+|.+|-- .| +-.+.. .-....|=+-|-+|||
T Consensus 102 ql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 5554443332 222333333344444443 24689999887542 22 111111 1112346677889999
Q ss_pred Chhhhhc--------CCCeEEEeecCCHHHHHHHHHHh
Q 044535 313 DKQVLKT--------GVDEMYEVEELNCREALQLFSLN 342 (1085)
Q Consensus 313 ~~~v~~~--------~~~~~~~l~~L~~~ea~~Lf~~~ 342 (1085)
-...... ....++-++.++-++-..+++.-
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 5432211 22234555666666666666543
No 281
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.73 E-value=0.016 Score=56.58 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=29.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
..+|.|.|.+|.||||||+++.+++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 368999999999999999999999987766666663
No 282
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.047 Score=60.46 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=57.3
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhc-CCCCC
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLE-DGDLS 258 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~-~~~~~ 258 (1085)
+.++.+.|-.+--.-.+|.|-|-+|||||||..+++.++...- .+.|+.. .....++.-. ...+.- ..+..
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~QiklR-A~RL~~~~~~l~ 150 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKLR-ADRLGLPTNNLY 150 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHHH-HHHhCCCccceE
Confidence 3455555543323347899999999999999999999998777 6778742 2333322211 112211 11122
Q ss_pred CCCCccchHHHHHhhcCCceEEEEeCCCC
Q 044535 259 LGASGLGHTFMNTRLRRKTVLIVLDDVEN 287 (1085)
Q Consensus 259 ~~~~~~~~~~l~~~l~~kr~LlVLDdv~~ 287 (1085)
.-........+...-+.++-++|+|-+..
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT 179 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQT 179 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccce
Confidence 21112222333333346888999998754
No 283
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.69 E-value=0.036 Score=59.19 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=34.5
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
..+.++|..+-..-.++.|+|.+|+|||++|.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3445555444455688999999999999999999765433444566764
No 284
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.67 E-value=0.026 Score=66.40 Aligned_cols=76 Identities=21% Similarity=0.384 Sum_probs=50.2
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT 271 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~ 271 (1085)
+..++..++|++|+||||||.-++++.. |. |..+ ..|+......+-+.+...+......+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG--Ys----VvEI-NASDeRt~~~v~~kI~~avq~~s~l~a------------ 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG--YS----VVEI-NASDERTAPMVKEKIENAVQNHSVLDA------------ 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC--ce----EEEe-cccccccHHHHHHHHHHHHhhcccccc------------
Confidence 4568999999999999999999988642 22 2121 346666666666666555443321110
Q ss_pred hhcCCceEEEEeCCCCH
Q 044535 272 RLRRKTVLIVLDDVENS 288 (1085)
Q Consensus 272 ~l~~kr~LlVLDdv~~~ 288 (1085)
..++.-||+|.++-.
T Consensus 385 --dsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 385 --DSRPVCLVIDEIDGA 399 (877)
T ss_pred --CCCcceEEEecccCC
Confidence 257888999999764
No 285
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.65 E-value=0.015 Score=59.56 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=27.5
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+.+.+|||.|.+|.||||+|+.++..+....
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~ 36 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEK 36 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCc
Confidence 4578999999999999999999999887663
No 286
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.59 E-value=0.028 Score=61.94 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=36.8
Q ss_pred HHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 181 EKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 181 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
..|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+..
T Consensus 41 ~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 41 LSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred HHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 34445554 333456889999999999999999988766666566778754
No 287
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.56 E-value=0.011 Score=56.36 Aligned_cols=22 Identities=50% Similarity=0.868 Sum_probs=20.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 044535 197 VGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
|+|.|++|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 288
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.51 E-value=0.015 Score=58.98 Aligned_cols=35 Identities=34% Similarity=0.649 Sum_probs=31.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..+|.+.|+.|.||||+|+.++.++...+...+++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 46899999999999999999999998888777776
No 289
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.51 E-value=0.042 Score=61.04 Aligned_cols=29 Identities=24% Similarity=0.416 Sum_probs=25.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+++++|++|+||||++..++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999999877654
No 290
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.50 E-value=0.023 Score=60.80 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=33.3
Q ss_pred HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc------CcceEEEee
Q 044535 183 VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ------FEGCCFLEN 230 (1085)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~ 230 (1085)
+..+|..+-..-.++.|+|.+|+||||+|.+++-..... -..++|+..
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 444554444456899999999999999999997543222 256777753
No 291
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.051 Score=61.58 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=34.9
Q ss_pred CCCccccchhHHHH---HHhhccCC-------CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 170 LDGLIGIESRVEKV---ESLLCIGL-------VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l---~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+++-|.|+..+++ .+.|.... .=++-|.++|++|.|||-||++++-...
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 45677887665554 45554321 1146688999999999999999987543
No 292
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.46 E-value=0.015 Score=67.62 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCccccchhHHHHHHhhc----cCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 170 LDGLIGIESRVEKVESLLC----IGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..+++|.++.+++|.+.|. .-...-+++.++|++|+||||||+.+++.+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4578999999999988772 22345689999999999999999999986543
No 293
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.32 Score=49.89 Aligned_cols=143 Identities=18% Similarity=0.392 Sum_probs=79.5
Q ss_pred ccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 175 GIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 175 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|.+..+++|.+.+.. +-....-|.++|++|.|||-||++||+.- .+.|+...+. .+
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgs--------el 217 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGS--------EL 217 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechH--------HH
Confidence 345556655554432 12345678899999999999999999743 2334432211 11
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHh----hcCCceEEEEeCCCCHH--------------H--HHHHhcCCCCCC-
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTR----LRRKTVLIVLDDVENSQ--------------Q--LKNLAGDHGWFG- 302 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~~~- 302 (1085)
.+..+ ++ +..++++. -.+-+-.|..|.+++.. | .-.++..++.|.
T Consensus 218 vqk~i----ge----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 218 VQKYI----GE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHh----hh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 11111 11 11222221 12456778888775431 1 112333333222
Q ss_pred -CCCEEEEEeCChhhhh-----c-CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 303 -LGSRIIITSRDKQVLK-----T-GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 303 -~gs~IiiTTR~~~v~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
..-+||+.|-.-+++. . ..+..++.++-+++...+.++-|.-
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 3567787776444443 2 4567789999998888888876653
No 294
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.1 Score=63.57 Aligned_cols=152 Identities=17% Similarity=0.180 Sum_probs=85.4
Q ss_pred CCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-Cc-----ceEEEeehhhhhhhhcHHHH
Q 044535 170 LDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-FE-----GCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~-----~~~~~~~~~~~s~~~~~~~l 243 (1085)
.+.++||+.+++++.+.|.....+-++ ++|.+|||||++|.-++.++... -+ ..++-.++...
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L--------- 237 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL--------- 237 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH---------
Confidence 466999999999999999755433333 67999999999999999987542 22 12222222110
Q ss_pred HHHHHHHHhcCCCCCCCCCccchH-HHHHhhcCCceEEEEeCCCCHH-----------HHHHHhcCCCCCCCCCEEEEEe
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHT-FMNTRLRRKTVLIVLDDVENSQ-----------QLKNLAGDHGWFGLGSRIIITS 311 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs~IiiTT 311 (1085)
..+. .-.++.++..+ .+++.-+.+++.|.+|.+.+.- .-.-+.+.+. .|.--.|=.||
T Consensus 238 -------vAGa--kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 238 -------VAGA--KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred -------hccc--cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 0011 01112222222 2233333458999999875421 1222333332 12223344555
Q ss_pred CChh---hhhc----CCCeEEEeecCCHHHHHHHHHHh
Q 044535 312 RDKQ---VLKT----GVDEMYEVEELNCREALQLFSLN 342 (1085)
Q Consensus 312 R~~~---v~~~----~~~~~~~l~~L~~~ea~~Lf~~~ 342 (1085)
-++- +.+. ...+.+.|...+.+++.+.++-.
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 4331 1111 34567889999999999988643
No 295
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.40 E-value=0.095 Score=53.69 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=25.9
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
+.|.|.+|+|||+||.+++......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999998876554445566763
No 296
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.39 E-value=0.055 Score=63.31 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=36.2
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34555566544344578999999999999999999987764444567764
No 297
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.36 E-value=0.03 Score=55.72 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=23.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
+.|.+.|.+|+||||+|++++..+++.-.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~ 30 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIW 30 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhh
Confidence 45778999999999999999986655443
No 298
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.34 E-value=0.017 Score=55.98 Aligned_cols=45 Identities=24% Similarity=0.226 Sum_probs=29.8
Q ss_pred cccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 174 IGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 174 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 466666666665554322233557899999999999999988743
No 299
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.33 E-value=0.015 Score=60.10 Aligned_cols=26 Identities=38% Similarity=0.634 Sum_probs=23.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
||+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988643
No 300
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.31 E-value=0.056 Score=63.23 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=36.6
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
+..+.++|..+-..-.++.|.|.+|+|||||+..++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44556666544445578999999999999999999887655434566774
No 301
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.30 E-value=0.04 Score=56.14 Aligned_cols=133 Identities=18% Similarity=0.229 Sum_probs=65.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh--hhhhhh--hcHHHHHHHHHHHHhcCC--CCCCCCCccc--
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV--REESAK--RGVHRLQEELFSRLLEDG--DLSLGASGLG-- 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~s~~--~~~~~l~~~ll~~~~~~~--~~~~~~~~~~-- 265 (1085)
-.+++|.|..|.|||||++.++.... ...+.+++... ...... ........+++..+.-.. +........+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 36899999999999999999986442 34455555321 100000 000011111222221110 0111112212
Q ss_pred -hHHHHHhhcCCceEEEEeCCCC---HHH---HHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 266 -HTFMNTRLRRKTVLIVLDDVEN---SQQ---LKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 266 -~~~l~~~l~~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
.-.+.+.+-..+-++++|+... ... +..+...... ..|..||++|.+........+.++.+.
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~~d~~~~l~ 172 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARYADRVILLK 172 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 1234556667888999998632 222 2222222211 116788888888765543345555543
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.066 Score=54.02 Aligned_cols=126 Identities=16% Similarity=0.250 Sum_probs=63.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC--------CCCCccc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS--------LGASGLG 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~--------~~~~~~~ 265 (1085)
-.+++|.|..|.|||||.+.++.... ...+.+++.... ... .........+ .-+....... ...-+..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 36899999999999999999987543 234455543210 000 0000000000 0000000000 0000001
Q ss_pred hHHHHHhhcCCceEEEEeCCCC------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEe
Q 044535 266 HTFMNTRLRRKTVLIVLDDVEN------SQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEV 327 (1085)
Q Consensus 266 ~~~l~~~l~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l 327 (1085)
.-.+.+.+-.++-+++||+... ...+..+...+. .+..||++|.+...... .+.++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~-~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD-ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh-CCEEEEE
Confidence 1224455667788999998632 222333333332 25678888888776655 5566555
No 303
>PRK07261 topology modulation protein; Provisional
Probab=95.28 E-value=0.013 Score=59.09 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 304
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.24 E-value=0.076 Score=60.30 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=19.4
Q ss_pred EEEEEEecCCCcHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~ 215 (1085)
-+++|+|++|.||||||+.+.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 479999999999999999985
No 305
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.22 E-value=0.038 Score=60.92 Aligned_cols=49 Identities=24% Similarity=0.301 Sum_probs=36.0
Q ss_pred HHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 182 KVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 182 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
.|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 4445554 344556899999999999999999988766655556777743
No 306
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.11 Score=55.45 Aligned_cols=35 Identities=17% Similarity=0.427 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH----hccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI----ANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~F~~~~~~ 228 (1085)
-|+|.++|++|.|||+|.++++++. ...|..+.-+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 4899999999999999999999854 3455555444
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.20 E-value=0.035 Score=56.08 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=59.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh--hhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV--REESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~--~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
.+++|.|..|.|||||++.++.-.. ...+.+++... ....+... ...-....-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHHHH
Confidence 5899999999999999999886432 22344444211 00001000 00001112234555
Q ss_pred hcCCceEEEEeCCCC---HHH---HHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 273 LRRKTVLIVLDDVEN---SQQ---LKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
+..++-++++|.... ... +..+...... ..+..||++|.+........+.++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYLSDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHhCCEEEEEc
Confidence 667788999998632 222 2222222111 123567888887765554344555554
No 308
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.14 E-value=0.14 Score=60.71 Aligned_cols=56 Identities=30% Similarity=0.359 Sum_probs=40.2
Q ss_pred CCccccchhHHHHHHhhcc---CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 171 DGLIGIESRVEKVESLLCI---GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.+++--.+-++++..||.. +....+++.+.|++|+||||.++.+++... |+..-|.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 4455555677788888763 223457899999999999999999998763 4444454
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.13 E-value=0.032 Score=55.78 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=63.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
-.+++|.|..|.|||||.+.++.... ...+.+++.... ... ......... .+.-.. ....-+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~~-~~~~~~~~~---~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VSF-ASPRDARRA---GIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CCc-CCHHHHHhc---CeEEEE--ecCHHHHHHHHHHHHH
Confidence 35899999999999999999986442 334555553211 000 000000000 000000 0110111122345556
Q ss_pred cCCceEEEEeCCCC---HHH---HHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 274 RRKTVLIVLDDVEN---SQQ---LKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
-.++-++++|+... ... +..+...+. ..|..||++|.+........+.++.+.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~~d~~~~l~ 156 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEIADRVTVLR 156 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 67788899998632 222 222222221 236788889888765443345555543
No 310
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.12 E-value=0.012 Score=54.65 Aligned_cols=29 Identities=34% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhccCcce
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQFEGC 225 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 225 (1085)
|.|+|.+|+||||+|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 57999999999999999999988888643
No 311
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.19 Score=56.66 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=76.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
|--.++|++|.|||++..++++.+ .+-++.-....+....++ +.++...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~dL----r~LL~~t----------------------- 284 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSDL----RHLLLAT----------------------- 284 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHHH----HHHHHhC-----------------------
Confidence 456689999999999999999754 233343332222222222 2222221
Q ss_pred CCceEEEEeCCCCHHH------------------------HHHHhcCCCCCCCCCEEE-EEeCChhhh-----hc-CCCe
Q 044535 275 RKTVLIVLDDVENSQQ------------------------LKNLAGDHGWFGLGSRII-ITSRDKQVL-----KT-GVDE 323 (1085)
Q Consensus 275 ~kr~LlVLDdv~~~~~------------------------~~~l~~~~~~~~~gs~Ii-iTTR~~~v~-----~~-~~~~ 323 (1085)
..|-+||+.|++-.-+ +..+-+.+..+| +-||| .||-..+-+ .. ..+.
T Consensus 285 ~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 285 PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC-CceEEEEecCChhhcCHhhcCCCccee
Confidence 2345566666643211 112222222223 34555 466544333 22 3556
Q ss_pred EEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhh
Q 044535 324 MYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCF 377 (1085)
Q Consensus 324 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~ 377 (1085)
.+.+.--+.+.-..|+..+..... ++ .+..+|.+...|.-+.=..++..
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHH
Confidence 678899999998899887764322 22 34445555555554443444433
No 312
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.12 E-value=0.12 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998876
No 313
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.075 Score=56.40 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=26.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
.+..++|||++|.|||-+|++|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 357899999999999999999999886655
No 314
>PRK09354 recA recombinase A; Provisional
Probab=95.08 E-value=0.05 Score=60.51 Aligned_cols=50 Identities=26% Similarity=0.277 Sum_probs=37.7
Q ss_pred HHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 181 EKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 181 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
..|..+|. .+-+.-+++-|+|++|+||||||.+++......-..++|+..
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 34555665 344556899999999999999999998776666667788854
No 315
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.08 E-value=0.094 Score=56.69 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=63.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCC---CCCC-CCCccchHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDG---DLSL-GASGLGHTF 268 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~---~~~~-~~~~~~~~~ 268 (1085)
+..-++|+|+.|.|||||.+.++..+... .+.+++... .+........+...+ ..+.... ..+. .+... ..-
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~-~v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k-~~~ 185 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGK-KVGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPK-AEG 185 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCE-EeecchhHHHHHHHh-cccccccccccccccccchH-HHH
Confidence 45789999999999999999999866543 233333211 000000011111110 0000000 0001 11111 112
Q ss_pred HHHhh-cCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 044535 269 MNTRL-RRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQV 316 (1085)
Q Consensus 269 l~~~l-~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 316 (1085)
+...+ ...+=++|+|.+...+.+..+..... .|..||+||-+..+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 23333 35788999999988877777765543 47889999987655
No 316
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.13 Score=58.53 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..++|.++|+.|+||||.+..++.++.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988664
No 317
>PTZ00301 uridine kinase; Provisional
Probab=94.99 E-value=0.022 Score=59.23 Aligned_cols=29 Identities=24% Similarity=0.549 Sum_probs=25.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998875544
No 318
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.96 E-value=0.19 Score=51.82 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=57.5
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCC
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSL 259 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~ 259 (1085)
.+.+...+.. +-+++.|.|.+|.||||+++.+...+...=..++++. . .......+.+.. . ..
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-p----T~~Aa~~L~~~~----~-~~---- 69 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-P----TNKAAKELREKT----G-IE---- 69 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-S----SHHHHHHHHHHH----T-S-----
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-C----cHHHHHHHHHhh----C-cc----
Confidence 3444445542 2357888999999999999999887665422333332 1 111122222221 1 00
Q ss_pred CCCccchHHHHHhh---------cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 044535 260 GASGLGHTFMNTRL---------RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVL 317 (1085)
Q Consensus 260 ~~~~~~~~~l~~~l---------~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 317 (1085)
.......+.... ..++-+||+|++... .++..+..... ..|+++|+.-=..+..
T Consensus 70 --a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 70 --AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQLP 134 (196)
T ss_dssp --EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSHH
T ss_pred --hhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchhc
Confidence 000000000000 123459999998653 45666665544 2578888876555443
No 319
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.15 Score=59.47 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=24.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+++|+|++|+||||++.+++..+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999998866544
No 320
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.96 E-value=0.1 Score=55.14 Aligned_cols=123 Identities=23% Similarity=0.207 Sum_probs=66.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehh--hhhhhhcHHHHHHHHHHHHhcCC------CCCCCCCccc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVR--EESAKRGVHRLQEELFSRLLEDG------DLSLGASGLG 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~--~~s~~~~~~~l~~~ll~~~~~~~------~~~~~~~~~~ 265 (1085)
-.++||+|.+|.||||+|+.+..-...... .+++.... ..+ .....+...+++....-.. ......-..-
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 468999999999999999999875544333 33332210 111 1122233334444332111 1111111111
Q ss_pred hHHHHHhhcCCceEEEEeCCCCH------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhc
Q 044535 266 HTFMNTRLRRKTVLIVLDDVENS------QQLKNLAGDHGWFGLGSRIIITSRDKQVLKT 319 (1085)
Q Consensus 266 ~~~l~~~l~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~ 319 (1085)
.-.+.+.+.-++-++|.|..-+. .|.-.+...+. ...|-..+..|-|-.+...
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhh
Confidence 23467778889999999975322 33333332221 1235667777777777665
No 321
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.94 E-value=0.021 Score=47.63 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+|+|.|..|+||||+|+.+.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 322
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.90 E-value=0.017 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.608 Sum_probs=22.0
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
|.|+|.+|+|||++|+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998766543
No 323
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.90 E-value=0.21 Score=54.40 Aligned_cols=25 Identities=36% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCceEEEEEEecCCCcHHHHHHHHH
Q 044535 191 LVDVHIVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~ 215 (1085)
.+++..|.+.|.+|.|||.||.+..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHH
Confidence 3578999999999999999998764
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.87 E-value=0.075 Score=53.28 Aligned_cols=123 Identities=19% Similarity=0.161 Sum_probs=60.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee---hhhhhhhhcH--HHHHHHHHHHHhcCCCCCCCCCccchHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN---VREESAKRGV--HRLQEELFSRLLEDGDLSLGASGLGHTF 268 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~---~~~~s~~~~~--~~l~~~ll~~~~~~~~~~~~~~~~~~~~ 268 (1085)
-.+++|.|..|.|||||++.++..... ..+.+++.. +....+...+ ..+.+.+... .......-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~----~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP----WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc----CCCCCCHHHHHHHH
Confidence 358999999999999999999864322 122222211 0001111111 1222222110 00111111111223
Q ss_pred HHHhhcCCceEEEEeCCCC---H---HHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEe
Q 044535 269 MNTRLRRKTVLIVLDDVEN---S---QQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEV 327 (1085)
Q Consensus 269 l~~~l~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l 327 (1085)
+.+.+-.++=++++|+-.. . ..+..+.... +..||++|.+..... ..++++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~-~~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK-FHDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh-hCCEEEEE
Confidence 4556667788889997632 2 2232333222 356888888776543 35555554
No 325
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.86 E-value=0.081 Score=58.01 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=24.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999999999999999876543
No 326
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.79 E-value=0.11 Score=55.15 Aligned_cols=49 Identities=18% Similarity=0.191 Sum_probs=34.2
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
.+.++|..+-..-.++.|.|.+|.||||+|.+++......-..++|+..
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4444554333445789999999999999999887654444456777753
No 327
>PRK03839 putative kinase; Provisional
Probab=94.79 E-value=0.022 Score=58.14 Aligned_cols=24 Identities=33% Similarity=0.721 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 328
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.78 E-value=0.046 Score=63.04 Aligned_cols=46 Identities=26% Similarity=0.216 Sum_probs=38.3
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..++||++.++.+...+..+ .-|.|.|++|+|||++|+.+......
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 46999999999988877644 34779999999999999999986643
No 329
>PRK04040 adenylate kinase; Provisional
Probab=94.77 E-value=0.029 Score=57.33 Aligned_cols=29 Identities=24% Similarity=0.614 Sum_probs=24.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
.+|+|+|++|+||||+++.+.+++...+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~ 31 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYK 31 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCe
Confidence 58999999999999999999998753343
No 330
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.76 E-value=0.027 Score=59.02 Aligned_cols=26 Identities=42% Similarity=0.700 Sum_probs=24.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999999876
No 331
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.75 E-value=0.15 Score=50.46 Aligned_cols=51 Identities=10% Similarity=0.287 Sum_probs=34.7
Q ss_pred HHHHHhhcCCceEEEEeC----CCCHHHHHH--HhcCCCCCCCCCEEEEEeCChhhhhc
Q 044535 267 TFMNTRLRRKTVLIVLDD----VENSQQLKN--LAGDHGWFGLGSRIIITSRDKQVLKT 319 (1085)
Q Consensus 267 ~~l~~~l~~kr~LlVLDd----v~~~~~~~~--l~~~~~~~~~gs~IiiTTR~~~v~~~ 319 (1085)
..|.+.+-+++-+|+-|. ++....|+- +...+ ...|..|||+|-+.++...
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNR 202 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHh
Confidence 346677778899999995 444444433 23222 2469999999999988765
No 332
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.74 E-value=0.16 Score=50.48 Aligned_cols=131 Identities=16% Similarity=0.090 Sum_probs=63.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCC-CC--CCCC-------cc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGD-LS--LGAS-------GL 264 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~-~~--~~~~-------~~ 264 (1085)
..|-|++-.|.||||.|..++-+...+=-.++.+.-+.. ....+-....+.+.-.+..... .. ..+. ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg-~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG-AWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC-CcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 567788889999999999988766544333433322211 1112222222222000000000 00 0011 11
Q ss_pred chHHHHHhhcC-CceEEEEeCCCCH--------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhc-CCCeEEEeec
Q 044535 265 GHTFMNTRLRR-KTVLIVLDDVENS--------QQLKNLAGDHGWFGLGSRIIITSRDKQVLKT-GVDEMYEVEE 329 (1085)
Q Consensus 265 ~~~~l~~~l~~-kr~LlVLDdv~~~--------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~l~~ 329 (1085)
+....++.+.. +-=|||||.+-.. +++-.++.. ..++..||+|-|+..-.-. ..+.+.++..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~---rp~~~evVlTGR~~p~~l~e~AD~VTEm~~ 156 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE---RPGHQHVIITGRGCPQDLLELADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh---CCCCCEEEEECCCCCHHHHHhCceeeeecc
Confidence 22233444444 4459999998432 233333333 3467899999997632222 3445555544
No 333
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.74 E-value=0.095 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~ 215 (1085)
-.+++|+|+.|.|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999999885
No 334
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.69 E-value=0.11 Score=57.74 Aligned_cols=50 Identities=14% Similarity=0.298 Sum_probs=33.7
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh------ccCcceEEEee
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA------NQFEGCCFLEN 230 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~------~~F~~~~~~~~ 230 (1085)
..|.++|..+-..-.++-|+|++|+|||+||..++-... ..=..++|++.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdt 138 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDT 138 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEc
Confidence 445556654445568899999999999999998764321 11235677753
No 335
>PRK08233 hypothetical protein; Provisional
Probab=94.69 E-value=0.024 Score=57.88 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998653
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.65 E-value=0.09 Score=53.43 Aligned_cols=126 Identities=18% Similarity=0.168 Sum_probs=62.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC--------CCCCccc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS--------LGASGLG 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~--------~~~~~~~ 265 (1085)
-.+++|.|..|.|||||++.++.... ...+.+++... .... . .......+ .-+....... ......+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~~-~-~~~~~~~i-~~~~q~~~~~~~tv~~~i~~~LS~G 102 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK-PQQGEITLDGV-PVSD-L-EKALSSLI-SVLNQRPYLFDTTLRNNLGRRFSGG 102 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC-CCCCEEEECCE-EHHH-H-HHHHHhhE-EEEccCCeeecccHHHhhcccCCHH
Confidence 35799999999999999999986543 22344544321 0000 0 00000000 0000000000 0111111
Q ss_pred ---hHHHHHhhcCCceEEEEeCCCCH------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 266 ---HTFMNTRLRRKTVLIVLDDVENS------QQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 266 ---~~~l~~~l~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
.-.+.+.+-.++=++++|+.... +.+..+..... .+..||++|.+...... .+.++.+.
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~-~d~~~~l~ 170 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIEH-MDKILFLE 170 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh-CCEEEEEE
Confidence 12344556677888999987432 22222222222 36778888888776653 55665553
No 337
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.045 Score=55.66 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=25.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
-.+++|.|..|.|||||++.++... ....+.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~ 59 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILI 59 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEE
Confidence 3689999999999999999998543 223444444
No 338
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.64 E-value=0.034 Score=58.13 Aligned_cols=28 Identities=43% Similarity=0.672 Sum_probs=24.5
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+...+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3568999999999999999999998654
No 339
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.14 Score=61.50 Aligned_cols=152 Identities=18% Similarity=0.243 Sum_probs=84.1
Q ss_pred CCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhc
Q 044535 171 DGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRG 239 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 239 (1085)
....|.+...+.+.+.... +-...+.+.++|++|.|||.||+++++.....|-.+..-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-----------
Confidence 4455666666555443321 113456888999999999999999999665555322110
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhcCCCCCCCCCE
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-------------QLKNLAGDHGWFGLGSR 306 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~ 306 (1085)
.++....++. .......+....+..+..|.+|.++... ....++.........+.
T Consensus 311 ------~l~sk~vGes------ek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 311 ------ELLSKWVGES------EKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred ------HHhccccchH------HHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 0111111100 0011122333335678999999985432 23334433332223333
Q ss_pred --EEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhcc
Q 044535 307 --IIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFK 345 (1085)
Q Consensus 307 --IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~ 345 (1085)
||-||-....... .-+..+.++.-+.++..+.|..+.-.
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 3334433322221 34668899999999999999988753
No 340
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.082 Score=53.44 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=63.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC----------CCCCc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS----------LGASG 263 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~----------~~~~~ 263 (1085)
-.+++|+|..|.|||||++.++.... ...+.+++.... ... .. ......+ .-+....... ...-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~~-~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKD-IKK-EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-ccc-ch-HhhhccE-EEEecCCccccCCcHHHHhhcCHHH
Confidence 36899999999999999999886432 234444442210 000 00 0000000 0000000000 00000
Q ss_pred cchHHHHHhhcCCceEEEEeCCCCH------HHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 264 LGHTFMNTRLRRKTVLIVLDDVENS------QQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 264 ~~~~~l~~~l~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
...-.+.+.+..++=++++|+.... ..+..+...+. ..|..||++|.+........+.++.+.
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~~d~i~~l~ 169 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERLCDRVAILN 169 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHhCCEEEEEe
Confidence 1112355566678889999987331 22222222222 236778999988776554345555553
No 341
>PRK00625 shikimate kinase; Provisional
Probab=94.61 E-value=0.025 Score=56.85 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|.|+||+|+||||+|+.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 342
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.57 E-value=0.067 Score=53.93 Aligned_cols=120 Identities=16% Similarity=0.087 Sum_probs=59.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHH-HHHh--cCC-CCCCCCC-------
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELF-SRLL--EDG-DLSLGAS------- 262 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll-~~~~--~~~-~~~~~~~------- 262 (1085)
...|-|+|-.|-||||.|..++-+...+=-.+.++.-.... ...+-....+.+- -.+. +.. .....+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 36788999999999999999987665443334333322211 1122222222210 0000 000 0000000
Q ss_pred ccchHHHHHhhcC-CceEEEEeCCCCHHH-----HHHHhcCCCCCCCCCEEEEEeCCh
Q 044535 263 GLGHTFMNTRLRR-KTVLIVLDDVENSQQ-----LKNLAGDHGWFGLGSRIIITSRDK 314 (1085)
Q Consensus 263 ~~~~~~l~~~l~~-kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gs~IiiTTR~~ 314 (1085)
..+.+..++.+.. +-=|||||.+-..-. .+.+...+....++..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 0112233444544 455999999843321 233333232334678999999976
No 343
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.55 E-value=0.12 Score=55.98 Aligned_cols=100 Identities=17% Similarity=0.170 Sum_probs=58.5
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCC
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSL 259 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~ 259 (1085)
++.+..++.. ...+|.|.|..|.||||+++++.+.+...-..++.+.+..+... .+.. +.. ...
T Consensus 69 ~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~~--------q~~----v~~ 132 (264)
T cd01129 69 LEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGIN--------QVQ----VNE 132 (264)
T ss_pred HHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCce--------EEE----eCC
Confidence 3445555532 23578999999999999999988876542223444433222110 0100 000 000
Q ss_pred CCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHh
Q 044535 260 GASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLA 295 (1085)
Q Consensus 260 ~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~ 295 (1085)
.........++..++..+=.++++++.+.+....+.
T Consensus 133 ~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 133 KAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred cCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 001123566788888888999999999988755444
No 344
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.55 E-value=0.52 Score=52.79 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=27.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..++++++|+.|+||||++..++.....+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 468999999999999999999987664443334454
No 345
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.54 E-value=0.09 Score=59.51 Aligned_cols=106 Identities=16% Similarity=0.204 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE-eehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL-ENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~-~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
..+.|.|+.|.||||+.+.+.+.+.......++. .+..+.... .. .. ......... ........++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~~----~~----~i~q~evg~-~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-NK----RS----LINQREVGL-DTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-Cc----cc----eEEccccCC-CCcCHHHHHHHhh
Confidence 6799999999999999999998776555555443 221111000 00 00 000111111 1123456678888
Q ss_pred cCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCC
Q 044535 274 RRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRD 313 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~ 313 (1085)
+..+=.|++|.+.+.+.+....... ..|-.++.|+-.
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 8899999999999888766543331 235445555443
No 346
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.53 E-value=0.032 Score=54.30 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987654
No 347
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.63 Score=48.08 Aligned_cols=162 Identities=17% Similarity=0.325 Sum_probs=86.7
Q ss_pred CCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhc
Q 044535 171 DGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRG 239 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 239 (1085)
.++=|.++.++++.+.+-. +-...+-|..+|++|.|||-+|++.+.+....|-.- .+
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL------------Ag 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL------------AG 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh------------cc
Confidence 4455666666665554321 112345678999999999999999887655444211 01
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh----cCCceEEEEeCCCCHH--------------H--HHHHhcCCC
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL----RRKTVLIVLDDVENSQ--------------Q--LKNLAGDHG 299 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l----~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~ 299 (1085)
. ++.+. ..+ ++...++... ...+..|.+|.++... | .-.++..+.
T Consensus 239 P-QLVQM----fIG----------dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD 303 (424)
T KOG0652|consen 239 P-QLVQM----FIG----------DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD 303 (424)
T ss_pred h-HHHhh----hhc----------chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc
Confidence 1 11111 111 1222233222 2467888888774321 1 223444444
Q ss_pred CCCC--CCEEEEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhccCC-CCCCCHHHHHHH
Q 044535 300 WFGL--GSRIIITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAFKLN-HPTEDYMGLSNQ 359 (1085)
Q Consensus 300 ~~~~--gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~ 359 (1085)
.|.+ .-+||-.|-.-.++ .. ..+..++.+--+++...+++.-|.-+-+ .+.-.++++++.
T Consensus 304 GFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 304 GFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 4444 44566655433333 33 4556777777777766677766665433 344566666543
No 348
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.51 E-value=0.17 Score=49.74 Aligned_cols=24 Identities=38% Similarity=0.670 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+|.|+|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998765
No 349
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.038 Score=54.87 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=63.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR 274 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~ 274 (1085)
.+++|.|..|.|||||++.++..+. ...+.+++.... ... .........+ .-.. ....-+...-.+...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~-~~~-~~~~~~~~~i----~~~~--qlS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKD-IAK-LPLEELRRRI----GYVP--QLSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEE-ccc-CCHHHHHhce----EEEe--eCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987543 344555553211 000 0001111100 0000 00001111223455556
Q ss_pred CCceEEEEeCCCC---HHH---HHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 275 RKTVLIVLDDVEN---SQQ---LKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 275 ~kr~LlVLDdv~~---~~~---~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
..+-++++|.... ... +..+..... ..+..+|++|.+........++++.+.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~~d~i~~l~ 154 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELAADRVIVLK 154 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 6788999998742 222 222222222 125678888888776655345555553
No 350
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.47 E-value=0.095 Score=55.01 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
.++.+.+.....+..+|||.|+||+|||||.-++...+...
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444344567899999999999999999998877654
No 351
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.47 E-value=0.076 Score=52.32 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=18.6
Q ss_pred EEecCCCcHHHHHHHHHHHH
Q 044535 199 IWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 199 I~G~gGiGKTtLA~~v~~~~ 218 (1085)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999876
No 352
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.46 E-value=0.19 Score=50.75 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877655
No 353
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.46 E-value=0.13 Score=51.87 Aligned_cols=128 Identities=21% Similarity=0.295 Sum_probs=62.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC--------CCCCccc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS--------LGASGLG 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~--------~~~~~~~ 265 (1085)
-.+++|.|..|.|||||.+.++.... ...+.+++... ... ..........+ .-........ ...-+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~-~~~-~~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGA-DIS-QWDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCE-Ecc-cCCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 35899999999999999999986543 23444444321 000 00011111110 0000000000 0000011
Q ss_pred hHHHHHhhcCCceEEEEeCCCC---H---HHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 266 HTFMNTRLRRKTVLIVLDDVEN---S---QQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 266 ~~~l~~~l~~kr~LlVLDdv~~---~---~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
.-.+.+.+-.++=+++||+... . ..+..+..... ..|..||++|.+...... .++++.+.
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~-~d~v~~l~ 169 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLAS-ADRILVLE 169 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh-CCEEEEEE
Confidence 1234455566777899998632 2 22323332222 236778888888776543 55666553
No 354
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.45 E-value=0.17 Score=54.48 Aligned_cols=25 Identities=20% Similarity=0.587 Sum_probs=22.1
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
|.++|++|+||||+|++++..+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999877543
No 355
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.25 Score=57.22 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=76.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHH-HHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTF-MNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~-l~~~ 272 (1085)
..-|.+||++|.|||-||++|++.-+..|-. . .+. +++..-.++. +.+... +.+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFis-----V-------KGP-----ELlNkYVGES-------ErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFIS-----V-------KGP-----ELLNKYVGES-------ERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEe-----e-------cCH-----HHHHHHhhhH-------HHHHHHHHHHh
Confidence 4557799999999999999999987766631 1 111 1222212211 112222 2223
Q ss_pred hcCCceEEEEeCCCCH-------------HHHHHHhcCCCCC--CCCCEEEEEeCChhhh-----hc-CCCeEEEeecCC
Q 044535 273 LRRKTVLIVLDDVENS-------------QQLKNLAGDHGWF--GLGSRIIITSRDKQVL-----KT-GVDEMYEVEELN 331 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~--~~gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~ 331 (1085)
-...++.|.+|.++.. ..+..|+..++-. ..|--||-.|-.+++. .. .-+...-|+.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3457899999998643 1255566555422 2344455445433332 22 346677888889
Q ss_pred HHHHHHHHHHhhcc
Q 044535 332 CREALQLFSLNAFK 345 (1085)
Q Consensus 332 ~~ea~~Lf~~~a~~ 345 (1085)
.+|-.+.++...-.
T Consensus 681 ~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 681 AEERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887743
No 356
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.39 E-value=0.05 Score=58.64 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
..|.++|..+-..-.+.=|+|.+|+|||+||..++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 3555666433233468889999999999999988754
No 357
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.39 E-value=0.66 Score=48.73 Aligned_cols=226 Identities=16% Similarity=0.187 Sum_probs=122.6
Q ss_pred CCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc------cCcceEEEeehhh------h---
Q 044535 170 LDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN------QFEGCCFLENVRE------E--- 234 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~~~~~------~--- 234 (1085)
.+.+.++++....+..+.. ..+.+-..++|+.|.||-|.+..+.+++-+ +-+...|...... +
T Consensus 12 l~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3457777777777777654 345677889999999999999988875432 2233344322111 0
Q ss_pred -------hh-hhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCce-EEEEeCCCCH--HHHHHHhcCCCCCCC
Q 044535 235 -------SA-KRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTV-LIVLDDVENS--QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 235 -------s~-~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVLDdv~~~--~~~~~l~~~~~~~~~ 303 (1085)
|+ ...-..+.++++.++.....++.. ..+.| ++|+-.++.. +.-.++.........
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~~-------------~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQ-------------GQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhhc-------------cccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 00 111123344444443332211110 12333 4555555543 222334333333445
Q ss_pred CCEEEEEeCCh--hhhhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHHhhh-h
Q 044535 304 GSRIIITSRDK--QVLKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVLGCF-L 378 (1085)
Q Consensus 304 gs~IiiTTR~~--~v~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~g~~-L 378 (1085)
.+|+|+..-.. -+... ...-.+.++..+++|-...+++-+-+.+-..+ .+++.+|+++++|+- -||-++-.. +
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 68888753321 22222 33456799999999999999877654443323 688999999999863 333322111 1
Q ss_pred cC---------CCHHHHHHHHHhhh-----cCCCchHHHHHHhhcCCC
Q 044535 379 FG---------RSKRDWESALNKLR-----KNPNMEIQNVLRITYDTL 412 (1085)
Q Consensus 379 ~~---------~~~~~w~~~l~~l~-----~~~~~~i~~~l~~sy~~L 412 (1085)
.+ -..-+|+-.+.+.. +..+..+..+=..=|+-|
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELL 282 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 11 13568988877643 233344444444445433
No 358
>PRK05973 replicative DNA helicase; Provisional
Probab=94.35 E-value=0.19 Score=52.93 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=27.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.-.++.|.|.+|+|||++|.+++.....+-..++|+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 346888999999999999999887654444445565
No 359
>COG3910 Predicted ATPase [General function prediction only]
Probab=94.35 E-value=0.37 Score=47.66 Aligned_cols=61 Identities=30% Similarity=0.401 Sum_probs=36.9
Q ss_pred HHHHhhcCCceEEEEeCCCC----HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEeec
Q 044535 268 FMNTRLRRKTVLIVLDDVEN----SQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVEE 329 (1085)
Q Consensus 268 ~l~~~l~~kr~LlVLDdv~~----~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~~ 329 (1085)
.+.+++. .+=+.|||.-+. ..|++-+.....-...|+.|||.|-++-++......+|++..
T Consensus 139 i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~ 203 (233)
T COG3910 139 IFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISE 203 (233)
T ss_pred HHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEec
Confidence 3444444 445778998754 345444432222224689999999998776655556666543
No 360
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.35 E-value=0.12 Score=56.03 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
+.|.|+|.+|.||||+|+.+...+...=..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 5688999999999999999998776532233344
No 361
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.32 E-value=0.13 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
-.+++|+|..|.|||||++.++....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36899999999999999999886543
No 362
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.11 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|.|.|.+|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999984
No 363
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.25 E-value=0.37 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
...|+++|++|+|||||...+..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 35678999999999999998864
No 364
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.24 E-value=0.33 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+..|+|++|+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999987654
No 365
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.23 E-value=0.093 Score=58.78 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=34.3
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------cceEEEee
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------EGCCFLEN 230 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~ 230 (1085)
..+.++|..+-..-.++-|+|++|+|||++|.+++....... ..++|+..
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 344455544434568889999999999999999986543221 25677753
No 366
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.23 E-value=0.26 Score=53.95 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=27.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEe
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLE 229 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~ 229 (1085)
-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 4588899999999999999998776544 34566663
No 367
>PRK06547 hypothetical protein; Provisional
Probab=94.23 E-value=0.042 Score=55.24 Aligned_cols=27 Identities=41% Similarity=0.362 Sum_probs=24.0
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
....+|+|.|++|.||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 368
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.21 E-value=0.15 Score=53.84 Aligned_cols=57 Identities=14% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHhhcCCceEEEEeCC----CC--HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEE
Q 044535 267 TFMNTRLRRKTVLIVLDDV----EN--SQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMY 325 (1085)
Q Consensus 267 ~~l~~~l~~kr~LlVLDdv----~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~ 325 (1085)
..+.+.|..++=|+|||.- |. ...+-.+...+. ..|.-|+++|-|-.......+.++
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~~D~vi 210 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAYFDRVI 210 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhhCCEEE
Confidence 3567788899999999963 33 233444554444 238899999998766554444444
No 369
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.20 E-value=0.12 Score=55.82 Aligned_cols=49 Identities=24% Similarity=0.309 Sum_probs=37.3
Q ss_pred HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh
Q 044535 183 VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV 231 (1085)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 231 (1085)
+..+|..+-+.-+++=|+|+.|.||||+|.+++-.....-..++|++.-
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 3344444445678999999999999999999987766666678898643
No 370
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.16 E-value=0.21 Score=51.95 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=38.8
Q ss_pred HHHHHhhcCCceEEEEeCC----C--CHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 267 TFMNTRLRRKTVLIVLDDV----E--NSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 267 ~~l~~~l~~kr~LlVLDdv----~--~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
-.+.+.+-..+-+|+.|.- + +...+-.+..... ...|..||+.|-+..++.. .++++.+.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~-~dr~i~l~ 216 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY-ADRVIELK 216 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh-CCEEEEEe
Confidence 3567778888999999964 2 2233333333221 1247789999999999886 55666554
No 371
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.16 E-value=0.036 Score=56.09 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=23.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...|.|+|++|+||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999873
No 372
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.13 E-value=0.079 Score=57.31 Aligned_cols=58 Identities=26% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCCCCccccchhHHH---HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcce
Q 044535 168 GALDGLIGIESRVEK---VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGC 225 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 225 (1085)
...+.+||-.+..+. +.++...+.-.-+.|.|+|++|.|||+||..+++.+...-+.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 356789998877665 5666655544568899999999999999999999998766543
No 373
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=3 Score=45.87 Aligned_cols=165 Identities=9% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh--------cc-Cc-ceEEEeehhhhhhhhcHHHHHHHHHHH
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA--------NQ-FE-GCCFLENVREESAKRGVHRLQEELFSR 250 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--------~~-F~-~~~~~~~~~~~s~~~~~~~l~~~ll~~ 250 (1085)
+.+.+.+..+ .-.++..++|..|+||+++|+++.+.+- .. .+ ...++... + ..-.+.++. ++...
T Consensus 6 ~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~-g--~~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF-D--KDLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC-C--CcCCHHHHH-HHHHH
Confidence 3444444322 2246777999999999999999998761 11 11 12222100 0 111111211 12111
Q ss_pred HhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEEEeCC-hhhhhc--CCCeEE
Q 044535 251 LLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--QLKNLAGDHGWFGLGSRIIITSRD-KQVLKT--GVDEMY 325 (1085)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IiiTTR~-~~v~~~--~~~~~~ 325 (1085)
+.-.+ .-.+.+=++|+|+++... ...++...+....+.+.+|++|.+ ..+.+. .....+
T Consensus 81 ~~~~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 81 LYFSS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred hccCC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 11000 011366678889987653 355666655555677888876644 444433 557889
Q ss_pred EeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 326 EVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 326 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
++.+++.++..+.+.... .+ .+.+..++..++|.=-|+..+
T Consensus 145 ~f~~l~~~~l~~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 145 NVKEPDQQKILAKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred ECCCCCHHHHHHHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 999999999988876431 11 133555666666633455443
No 374
>PRK13947 shikimate kinase; Provisional
Probab=94.11 E-value=0.036 Score=55.94 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999988743
No 375
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.09 E-value=0.2 Score=57.54 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=31.7
Q ss_pred hhHHHHHHhhc-----cCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 178 SRVEKVESLLC-----IGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 178 ~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+-+.++..||. ...-+.+++.|.|++|+||||.++.++...
T Consensus 89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34566677776 334456899999999999999999988754
No 376
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.08 E-value=0.041 Score=56.46 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 377
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.03 E-value=0.13 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHHh
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+++.|++|.||||+|+.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998775
No 378
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.98 E-value=0.043 Score=56.19 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=52.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCC-CCCCCCCccchHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDG-DLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~-~~~~~~~~~~~~~l~~~ 272 (1085)
-..++|.|..|.||||+++.+...+... ...+.+.+..+..... .... ++.... .............++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3678999999999999999998866533 2333333221111000 0000 000000 00001112234556667
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhc
Q 044535 273 LRRKTVLIVLDDVENSQQLKNLAG 296 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~~~~l~~ 296 (1085)
++..+=.+|++.+.+.+.++.+..
T Consensus 97 lR~~pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred hccCCCEEEEEccCcHHHHHHHHH
Confidence 777788899999998877665543
No 379
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.16 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999985
No 380
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.043 Score=55.47 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999876
No 381
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.96 E-value=0.074 Score=56.54 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 191 LVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
.....+++|.|+.|.|||||++.+...++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 34678999999999999999999998776543
No 382
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.95 E-value=2.4 Score=47.16 Aligned_cols=48 Identities=23% Similarity=0.091 Sum_probs=33.5
Q ss_pred EEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcCCchHH
Q 044535 324 MYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 324 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glPLal 371 (1085)
+++|++++.+|+..++..++-.+--.. ...+...+++....+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987764333222 233445566666679998644
No 383
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.94 E-value=0.79 Score=58.43 Aligned_cols=222 Identities=17% Similarity=0.149 Sum_probs=106.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccC----cceEEEeehhhhhhhhcHH--HHHHHHHHHHhcCCCCCCCCCccchHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQF----EGCCFLENVREESAKRGVH--RLQEELFSRLLEDGDLSLGASGLGHTF 268 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F----~~~~~~~~~~~~s~~~~~~--~l~~~ll~~~~~~~~~~~~~~~~~~~~ 268 (1085)
.-+.|+|.+|.||||....++-...... +..+|+..-.......... .+..-+...+.... ........
T Consensus 223 ~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~-----~~~~~~~~ 297 (824)
T COG5635 223 AKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG-----IAKQLIEA 297 (824)
T ss_pred hheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC-----CcchhhHH
Confidence 3688999999999999999886432221 2223332110011111111 22222222222111 11111222
Q ss_pred HHHhhcCCceEEEEeCCCCHHH---------HHHHhcCCCCCCCCCEEEEEeCChhhhhc-CCCeEEEeecCCHHHHHHH
Q 044535 269 MNTRLRRKTVLIVLDDVENSQQ---------LKNLAGDHGWFGLGSRIIITSRDKQVLKT-GVDEMYEVEELNCREALQL 338 (1085)
Q Consensus 269 l~~~l~~kr~LlVLDdv~~~~~---------~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~l~~L~~~ea~~L 338 (1085)
..+.++..++|+.+|.++.... +..+.+. -+.+++|+|+|....-.. ..-..+++..+.++.-.+.
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~ 373 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQF 373 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHH
Confidence 2478889999999999876532 2233333 248999999987654333 2233445555554433222
Q ss_pred H--------HHhhccCCCCC-CCHH-HH---HHHHHHHhcCCchHHHHHhhhhc------CCCHHHHHHHHHhhhcCCCc
Q 044535 339 F--------SLNAFKLNHPT-EDYM-GL---SNQVVHYAKGIPLALKVLGCFLF------GRSKRDWESALNKLRKNPNM 399 (1085)
Q Consensus 339 f--------~~~a~~~~~~~-~~~~-~~---~~~i~~~~~glPLal~~~g~~L~------~~~~~~w~~~l~~l~~~~~~ 399 (1085)
. ....++..... ..+. .+ ..+-.+.....|++|.+.+..-. ....+-++.+++.+-...+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~ 453 (824)
T COG5635 374 ILYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDE 453 (824)
T ss_pred HHHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccch
Confidence 1 11112211111 0011 11 11333444778999888874332 23456677777665443332
Q ss_pred hHHHHHHhhcCCCC-HhHHH-HHhhhhc
Q 044535 400 EIQNVLRITYDTLD-DEEKA-IFLDIAC 425 (1085)
Q Consensus 400 ~i~~~l~~sy~~L~-~~~k~-~fl~~a~ 425 (1085)
.-...+...|+.+. +...+ .+..+|.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~la~ 481 (824)
T COG5635 454 TRGIKWSKTYAKLTTDQQDKWLLQLLAA 481 (824)
T ss_pred hhhhcchhhhcccchHHHHHHHHHHHHH
Confidence 22223444555553 33334 4444443
No 384
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.94 E-value=0.19 Score=53.29 Aligned_cols=61 Identities=15% Similarity=0.252 Sum_probs=36.1
Q ss_pred HHHHHhhcCCceEEEEeCCCC------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEee
Q 044535 267 TFMNTRLRRKTVLIVLDDVEN------SQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVE 328 (1085)
Q Consensus 267 ~~l~~~l~~kr~LlVLDdv~~------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~ 328 (1085)
..+.+.|.++.=+++||.--+ ...+-.+...+. ...|--||+++-|-..+..-.++.+-++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 456777888888889996422 222222222221 1246779999999877766455555443
No 385
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.93 E-value=0.3 Score=64.46 Aligned_cols=28 Identities=11% Similarity=0.097 Sum_probs=23.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..+-|.++|++|.|||.||+++|....-
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999986543
No 386
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.90 E-value=0.078 Score=53.73 Aligned_cols=27 Identities=41% Similarity=0.543 Sum_probs=24.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..+|+|.|++|+||||+|++++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999997754
No 387
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=2.7 Score=44.68 Aligned_cols=51 Identities=18% Similarity=0.285 Sum_probs=39.4
Q ss_pred CCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 170 LDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
=.++-|.+...+.|.+..-. ....-+-|.++|++|.||+-||++|+.....
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 36788999999888775322 2233678899999999999999999986543
No 388
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.85 E-value=0.21 Score=53.61 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
-.+++|+|..|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 389
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.85 E-value=0.37 Score=49.77 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
+++|+|+.|.|||||+++++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999873
No 390
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.81 E-value=0.094 Score=50.71 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=25.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
++|.|+|..|+|||||++.+.+.+..+--.++.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 4799999999999999999999876443334433
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.81 E-value=0.049 Score=55.20 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
++|.+.|++|+||||+|+++......
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 57899999999999999999887543
No 392
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.80 E-value=0.071 Score=50.62 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
-.+|.+.|.-|.||||+++.++..+
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999865
No 393
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.78 E-value=0.12 Score=61.29 Aligned_cols=57 Identities=19% Similarity=0.322 Sum_probs=39.2
Q ss_pred HHHHhhcCCceEEEEeCCC------CHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEeec
Q 044535 268 FMNTRLRRKTVLIVLDDVE------NSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEVEE 329 (1085)
Q Consensus 268 ~l~~~l~~kr~LlVLDdv~------~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l~~ 329 (1085)
.|.+.|-.++=+|+||.-- ....++.++..+ +| -+||+|-|+..+...+..++++..
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 4556677788899999653 334455555543 35 799999999998875556666654
No 394
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.77 E-value=0.44 Score=50.29 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|.|..|.|||||++.++.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999974
No 395
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.77 E-value=0.08 Score=58.31 Aligned_cols=59 Identities=27% Similarity=0.344 Sum_probs=41.6
Q ss_pred CCCCccccchhHHH---HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEE
Q 044535 169 ALDGLIGIESRVEK---VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCF 227 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 227 (1085)
..+++||.....+. +.++...+.-.-+.|.|.|++|.|||+||..+++.+....+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 35789999887766 355555443335888999999999999999999999988885543
No 396
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.77 E-value=0.071 Score=54.14 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=22.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999877543
No 397
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.77 E-value=0.17 Score=63.15 Aligned_cols=50 Identities=28% Similarity=0.256 Sum_probs=38.0
Q ss_pred CCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 169 ALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
....++|....+.++.+.+..-...-..|.|+|..|+|||++|+.+++.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999988888766554322233567899999999999999998753
No 398
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.74 E-value=0.21 Score=56.35 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCc--ceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFE--GCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~--~~~~~ 228 (1085)
-.+++++|+.|+||||++.+++.+....+. .+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 478999999999999999999987654442 34444
No 399
>PHA02244 ATPase-like protein
Probab=93.73 E-value=0.19 Score=56.09 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCccccchhHH----HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 171 DGLIGIESRVE----KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 171 ~~~vGr~~~~~----~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++|...... .+..++..+ .-|.|+|++|+|||+||++++......
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44677655554 344444322 246789999999999999999876443
No 400
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.67 E-value=0.09 Score=54.46 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=28.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+|+|+|++|.||||||+.+...+...-...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 457999999999999999999998775443334555
No 401
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.31 Score=50.41 Aligned_cols=56 Identities=29% Similarity=0.512 Sum_probs=38.5
Q ss_pred CCccccchhHHHHHHhhc-----------cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh
Q 044535 171 DGLIGIESRVEKVESLLC-----------IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV 231 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 231 (1085)
.++=|=.++++++.+... .+-+..+-|.++|++|.|||-+|++|+++.. .||+..+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd-----acfirvi 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVI 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC-----ceEEeeh
Confidence 345566666776655432 1224456788999999999999999999763 4566544
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.59 E-value=0.2 Score=59.55 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=38.3
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
+..+.++|..+-..-.++.|.|++|+||||||.+++.....+-+.++|+.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45666667555455688999999999999999999987766656667763
No 403
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.54 E-value=0.16 Score=55.16 Aligned_cols=44 Identities=30% Similarity=0.245 Sum_probs=36.1
Q ss_pred hhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 186 LLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 186 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
++..+=+.-+++.|+|.+|+|||++|.++..+.......++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33333355689999999999999999999998888888888884
No 404
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.54 E-value=0.073 Score=60.14 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=34.9
Q ss_pred CccccchhHHHHHHhhccC------------CCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 172 GLIGIESRVEKVESLLCIG------------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
++||.+..++.+.-.+... ....+-|.++|++|+|||++|++++......|
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4666666666654333211 11236788999999999999999999876544
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.54 E-value=0.7 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..|++++|+.|+||||++.+++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~ 282 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVM 282 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999986643
No 406
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.49 E-value=0.043 Score=55.12 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=30.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh-ccCcceEEEeehhhhhh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA-NQFEGCCFLENVREESA 236 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~ 236 (1085)
..++.+.|+.|+|||.||+++++.+. ......+-+ +....+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhcccc
Confidence 45788999999999999999999887 455444433 4444444
No 407
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.44 E-value=0.19 Score=51.20 Aligned_cols=25 Identities=44% Similarity=0.603 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
-.+++|.|..|.|||||++.++...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998643
No 408
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.43 E-value=0.054 Score=56.98 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+|||.|..|.||||+|+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999987753
No 409
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.39 E-value=0.12 Score=50.61 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=28.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCF 227 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 227 (1085)
...+|.+.|.+|.||||+|.++++++...--.+..
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~ 56 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYL 56 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45799999999999999999999988766554433
No 410
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.39 E-value=0.054 Score=55.01 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 411
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.38 E-value=0.4 Score=51.19 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|.|..|.|||||++.++.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G 49 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999985
No 412
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.33 E-value=0.05 Score=52.52 Aligned_cols=27 Identities=22% Similarity=0.609 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
.++|+|+.|+|||||++.++..+...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998654443
No 413
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.30 E-value=0.28 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|.|..|.|||||++.++.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 35799999999999999999985
No 414
>PRK05439 pantothenate kinase; Provisional
Probab=93.30 E-value=0.1 Score=57.26 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=25.6
Q ss_pred CCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 191 LVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.....+|||.|.+|+||||+|+.+...+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999999886654
No 415
>PRK13949 shikimate kinase; Provisional
Probab=93.29 E-value=0.06 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.438 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|.|+|+.|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 416
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.27 E-value=0.21 Score=57.71 Aligned_cols=93 Identities=22% Similarity=0.300 Sum_probs=51.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC---CCCCccc-----
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS---LGASGLG----- 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~---~~~~~~~----- 265 (1085)
-+.++|.|.+|+|||||+..++.....+...++-+..+++ ....+..+.++++..-.-....- ..+....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3678999999999999999998876655333332223322 22344455555543211110000 0111111
Q ss_pred ---hHHHHHhh---cCCceEEEEeCCCCH
Q 044535 266 ---HTFMNTRL---RRKTVLIVLDDVENS 288 (1085)
Q Consensus 266 ---~~~l~~~l---~~kr~LlVLDdv~~~ 288 (1085)
.-.+.+++ +++.+||++||+..-
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 12244555 579999999999543
No 417
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.26 E-value=0.39 Score=49.94 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~ 215 (1085)
+++|+|..|.|||||..+++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 418
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.26 E-value=0.3 Score=50.61 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
-.+++|+|..|.|||||.+.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998764
No 419
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.24 E-value=1.7 Score=48.27 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-..|+|+|+.||||+||.+.+.-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 35789999999999999998873
No 420
>PRK06217 hypothetical protein; Validated
Probab=93.24 E-value=0.056 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|.|.|++|.||||+|+++..+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 421
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.24 E-value=0.22 Score=53.27 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
.|.++|..+=..-.++.|.|.+|.|||++|.++.......-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444555544455689999999999999999998765434455677774
No 422
>COG4240 Predicted kinase [General function prediction only]
Probab=93.23 E-value=0.23 Score=50.37 Aligned_cols=86 Identities=24% Similarity=0.214 Sum_probs=47.8
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccC-cceEEEeehhhhhhh-hcHHHHHHHHHHHHhcCCCCCCCCCccchHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EGCCFLENVREESAK-RGVHRLQEELFSRLLEDGDLSLGASGLGHTFM 269 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~-~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l 269 (1085)
++.-++||.|+-|.||||+|..+++...... ..+...+ .....-. .+-..+.++.-.-+....-....+..-+.+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS-LDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-LDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee-hhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 4578999999999999999999999776665 3444331 1111111 11222333321112223323344455556666
Q ss_pred HHhhcCCce
Q 044535 270 NTRLRRKTV 278 (1085)
Q Consensus 270 ~~~l~~kr~ 278 (1085)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 666666533
No 423
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.22 E-value=0.06 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+|.|.|++|.||||+|+.+..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998763
No 424
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.22 E-value=0.47 Score=46.06 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHh
Q 044535 39 PALLKAIEDSNISIVILSKDYASSSWCLDELLKILEC 75 (1085)
Q Consensus 39 ~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~ 75 (1085)
.++.++|+++++.+.|+......+.+. .++.+.+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~ 38 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKE 38 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHh
Confidence 467899999999999999766555553 255555543
No 425
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.20 E-value=0.061 Score=55.79 Aligned_cols=23 Identities=48% Similarity=0.798 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998866
No 426
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.17 E-value=0.15 Score=56.98 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH--hc----cCcceEEEee
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI--AN----QFEGCCFLEN 230 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~--~~----~F~~~~~~~~ 230 (1085)
..|.++|..+-..-.+.-|+|.+|+|||+|+..++-.. .. .-..++|++.
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 34555565444456888899999999999999886432 11 1235677753
No 427
>PTZ00494 tuzin-like protein; Provisional
Probab=93.16 E-value=5.4 Score=45.22 Aligned_cols=174 Identities=13% Similarity=0.118 Sum_probs=96.9
Q ss_pred HHHHHHHHhhccccc------ccCCCCCccccchhHHHHHHhhcc-CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 151 VEKIVKDVLKKLNHT------SSGALDGLIGIESRVEKVESLLCI-GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 151 i~~i~~~i~~~l~~~------~~~~~~~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
.+-.++...+.+++. .+.....+|.|+.+-.-+.+.|.. +...++++++.|.-|.||++|.+....+- --
T Consensus 345 l~~Av~TLsk~~~~~~~~~~~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~ 421 (664)
T PTZ00494 345 LRTAIETLSKAARPRKEEGMLAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GV 421 (664)
T ss_pred HHHHHHHhhcccCCCcccccccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CC
Confidence 334445555544332 345567899999998888888764 34568999999999999999998776542 22
Q ss_pred ceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHH-------hhcCCceEEEEe--CCCCHHH----
Q 044535 224 GCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNT-------RLRRKTVLIVLD--DVENSQQ---- 290 (1085)
Q Consensus 224 ~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~-------~l~~kr~LlVLD--dv~~~~~---- 290 (1085)
..+|++. +. ....+..+.+. +.-.. .+ .-.+..+++.+ ...++.-+||+- +-.+...
T Consensus 422 paV~VDV-Rg--~EDtLrsVVKA----LgV~n-ve--~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE 491 (664)
T PTZ00494 422 ALVHVDV-GG--TEDTLRSVVRA----LGVSN-VE--VCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGE 491 (664)
T ss_pred CeEEEEe-cC--CcchHHHHHHH----hCCCC-hh--hhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHH
Confidence 3556643 21 12233333333 32211 21 11223333333 234555566663 2222211
Q ss_pred HHHHhcCCCCCCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHH
Q 044535 291 LKNLAGDHGWFGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSL 341 (1085)
Q Consensus 291 ~~~l~~~~~~~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~ 341 (1085)
.-.|... ..-++|++----+.+-.. .--..|.++.++.++|.++-..
T Consensus 492 ~vaLacD----rRlCHvv~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH 542 (664)
T PTZ00494 492 VVSLVSD----CQACHIVLAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEH 542 (664)
T ss_pred HHHHHcc----chhheeeeechHhhhchhhccCccceeEecCCcCHHHHHHHHhc
Confidence 1122222 235777775443332211 2236799999999999998754
No 428
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.14 E-value=0.58 Score=48.83 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|.|..|.|||||++.++.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999975
No 429
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.13 E-value=0.24 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
-.+++|+|..|.|||||++.++...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999998643
No 430
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.12 E-value=0.12 Score=52.90 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=26.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV 231 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 231 (1085)
.|+|+|-||+||||+|..++.++.++-.+.+.+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDa 37 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDA 37 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeC
Confidence 589999999999999999777665554334444443
No 431
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.11 E-value=0.1 Score=59.06 Aligned_cols=52 Identities=27% Similarity=0.279 Sum_probs=36.5
Q ss_pred CCccccchhHHHHHHhhcc---------C---CCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 171 DGLIGIESRVEKVESLLCI---------G---LVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
.+++|.+..++.+..++.. + ....+.+.++|++|+||||||+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 3477777777776655532 0 01136788999999999999999998765444
No 432
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=0.11 Score=53.06 Aligned_cols=51 Identities=22% Similarity=0.413 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 172 GLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
++=|.+-..+++.+.... +-+..+-|.++|++|.|||.||++|++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 466777777777665432 224567888999999999999999998766555
No 433
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.10 E-value=0.18 Score=47.91 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=5.2
Q ss_pred hcCCCCccEEecC
Q 044535 846 LSGLCSLTELHLN 858 (1085)
Q Consensus 846 ~~~l~~L~~L~Ls 858 (1085)
+..+++|+.+.+.
T Consensus 77 F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 77 FSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TTECEEEET
T ss_pred ccccccccccccC
Confidence 3344444444443
No 434
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.10 E-value=0.078 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhc
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999998754
No 435
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.09 E-value=0.071 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 044535 197 VGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
|.|+|++|.||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999876
No 436
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=2.4 Score=50.99 Aligned_cols=95 Identities=20% Similarity=0.304 Sum_probs=56.5
Q ss_pred CCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcH
Q 044535 171 DGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGV 240 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~ 240 (1085)
+++=|.++-..+|.+-+.. +-....=|.++|++|.|||-||++|+...+-.| +..- +.
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVK-------GP 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVK-------GP 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Eeec-------CH
Confidence 5666777777777654432 112234577999999999999999998764333 3221 11
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH
Q 044535 241 HRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS 288 (1085)
Q Consensus 241 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~ 288 (1085)
+++..-.++. .+...+...+.-..+++.|.+|.+++.
T Consensus 740 -----ELLNMYVGqS------E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -----ELLNMYVGQS------EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -----HHHHHHhcch------HHHHHHHHHHhhccCCeEEEecccccc
Confidence 1222212221 112233344444568999999998764
No 437
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.05 E-value=0.074 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+++|.|++|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 438
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.01 E-value=0.41 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.474 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|..|.|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 29 KITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999999853
No 439
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.01 E-value=0.11 Score=51.83 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..++++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4679999999999999999999987765
No 440
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.63 Score=55.28 Aligned_cols=153 Identities=20% Similarity=0.254 Sum_probs=87.6
Q ss_pred CCCCCccccchhHHHHHHhhc---cCC-------CceEEEEEEecCCCcHHHHHHHHHHHHhccCcc---eEEEeehhhh
Q 044535 168 GALDGLIGIESRVEKVESLLC---IGL-------VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEG---CCFLENVREE 234 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~---~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~---~~~~~~~~~~ 234 (1085)
....+.-|.+...+++.+.+. ... .=++-|.++|++|.|||.||++++....-.|-. .-|+.
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe----- 221 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE----- 221 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-----
Confidence 345678899888877766553 211 124668899999999999999999865444321 11110
Q ss_pred hhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCC
Q 044535 235 SAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDH 298 (1085)
Q Consensus 235 s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~ 298 (1085)
...+-. .........+..++-++.+++|.++.. ..+..+....
T Consensus 222 ---------------mfVGvG------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEm 280 (596)
T COG0465 222 ---------------MFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEM 280 (596)
T ss_pred ---------------hhcCCC------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhh
Confidence 000000 011122334444556789999877432 1356666666
Q ss_pred CCCCCCCEEE-E-EeCChhhhh-----c-CCCeEEEeecCCHHHHHHHHHHhhccC
Q 044535 299 GWFGLGSRII-I-TSRDKQVLK-----T-GVDEMYEVEELNCREALQLFSLNAFKL 346 (1085)
Q Consensus 299 ~~~~~gs~Ii-i-TTR~~~v~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 346 (1085)
+-++...-|| + .|-..+|+. . .-+..+.++..+-....+.+.-|+-+.
T Consensus 281 DGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~ 336 (596)
T COG0465 281 DGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNK 336 (596)
T ss_pred ccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC
Confidence 6555333333 3 232233332 2 455667777777777788887666443
No 441
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.98 E-value=0.15 Score=55.18 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.2
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
..-.++.|.|.+|+||||+|.+++.....+=..++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34578999999999999999998765544444667764
No 442
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.95 E-value=0.069 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
++.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998863
No 443
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.35 Score=49.57 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=33.5
Q ss_pred HHHHhhcCCceEEEEeCCCCHHHHHHH------hcCCCCCCCCCEEEEEeCChhhhhc-CCCeEE
Q 044535 268 FMNTRLRRKTVLIVLDDVENSQQLKNL------AGDHGWFGLGSRIIITSRDKQVLKT-GVDEMY 325 (1085)
Q Consensus 268 ~l~~~l~~kr~LlVLDdv~~~~~~~~l------~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~ 325 (1085)
.+-+.+--++-+.|||..++--+++++ ...+. .+|+-++|.|-...++.. ..+.+|
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344455567889999988764433332 22222 347777777777777776 444444
No 444
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.93 E-value=0.12 Score=55.08 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=33.0
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
.++...+.....+..+|||.|.||+|||||.-++-.++.++=.
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 3455555555677899999999999999999999887755433
No 445
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.079 Score=50.94 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+|.|-|++|.||||+|+.+++...-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 5889999999999999999987643
No 446
>PRK13948 shikimate kinase; Provisional
Probab=92.89 E-value=0.074 Score=53.88 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+.|.++||.|+||||+++.++++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457788999999999999999998764
No 447
>PRK13946 shikimate kinase; Provisional
Probab=92.87 E-value=0.073 Score=54.42 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+.|.+.|++|+||||+|+.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999873
No 448
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.84 E-value=0.083 Score=52.86 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=30.8
Q ss_pred ccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 173 LIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
+||.+..+.++.+.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777777777666432222244569999999999999999983
No 449
>PTZ00035 Rad51 protein; Provisional
Probab=92.82 E-value=0.29 Score=55.02 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+.++|..+-..-.++.|+|.+|.|||||+..++-..
T Consensus 104 ~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 345556665554556899999999999999999887543
No 450
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.81 E-value=0.75 Score=53.88 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=43.9
Q ss_pred ccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh-ccCcceEEEeehhhhhhhhcHHHHHHHHHHHH
Q 044535 173 LIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA-NQFEGCCFLENVREESAKRGVHRLQEELFSRL 251 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~ 251 (1085)
..|...-...|.+++. +-..-.++.|.|.+|+|||++|..++..+. .+-..++|+. -.-...++...++...
T Consensus 174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 4455555555555553 323346888999999999999999997654 3223355552 2234445555555443
No 451
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.81 E-value=0.041 Score=34.15 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=12.7
Q ss_pred CccEEecCCCCCCCCCcccCC
Q 044535 851 SLTELHLNDCNLLELPSALTC 871 (1085)
Q Consensus 851 ~L~~L~Ls~n~l~~lp~~l~~ 871 (1085)
+|++|+|++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 452
>PRK08506 replicative DNA helicase; Provisional
Probab=92.81 E-value=1 Score=53.23 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=44.3
Q ss_pred ccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHH
Q 044535 173 LIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRL 251 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~ 251 (1085)
..|...-...|.+++ .+-..-.++.|-|.+|+|||++|..++..+..+=..++|+ |-.-...++...+++..
T Consensus 172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~f------SlEMs~~ql~~Rlla~~ 243 (472)
T PRK08506 172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFF------SLEMPAEQLMLRMLSAK 243 (472)
T ss_pred CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEE------eCcCCHHHHHHHHHHHh
Confidence 445555556666654 2333446888999999999999999988664432335555 22234445555555543
No 453
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.79 E-value=1.3 Score=47.48 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=84.4
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
++...+.|+|-..-.+ +..++......-+.+.++|+.|+|||+-++.+++.. + ..|+. ..+..+....++.
T Consensus 67 ~~~~~~~~l~tkt~r~-~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p-~~~l~---~~~p~~~a~~~i~ 137 (297)
T COG2842 67 LEKLAPDFLETKTVRR-IFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----P-NALLI---EADPSYTALVLIL 137 (297)
T ss_pred cccccccccccchhHh-HhhhhhhhhhcCceEEEeccccchhHHHHHhhcccC----c-cceee---cCChhhHHHHHHH
Confidence 3345677888765432 333333333334588899999999999999988653 2 23332 2233343444444
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCe
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDE 323 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~ 323 (1085)
.+........+ .........+..++++..-+++.|..+.. ..++.+.......+-| ++..--.+ .
T Consensus 138 ~i~~~~~~~~~---~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~--~vLvG~pr-L------- 204 (297)
T COG2842 138 IICAAAFGATD---GTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTGIG--VVLVGMPR-L------- 204 (297)
T ss_pred HHHHHHhcccc---hhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhCce--EEEecChH-H-------
Confidence 44443333221 22233445566667888889999988664 3455555443322222 22111111 1
Q ss_pred EEEeecCCHHHHHHHHHHhhccCC
Q 044535 324 MYEVEELNCREALQLFSLNAFKLN 347 (1085)
Q Consensus 324 ~~~l~~L~~~ea~~Lf~~~a~~~~ 347 (1085)
...-.=+..+..++|++..++..
T Consensus 205 -~~~l~~~~~~~~rl~srv~v~~~ 227 (297)
T COG2842 205 -FKVLRRPEDELSRLYSRVRVGKL 227 (297)
T ss_pred -HhccccchHHHHHHHHHhhhHhh
Confidence 11111235567778887777644
No 454
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.79 E-value=0.1 Score=50.47 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+|+|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999999887765
No 455
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.78 E-value=0.35 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
-.+++|.|..|.|||||.+.++...
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998644
No 456
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.73 E-value=0.39 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEecCCCcHHHHHHHHHHHH
Q 044535 197 VGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998765
No 457
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.73 E-value=0.18 Score=56.15 Aligned_cols=94 Identities=19% Similarity=0.179 Sum_probs=53.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh-cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR-GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
-..++|.|..|.||||+++++...+.... ..+.+.+..+..... .... +...........-...+.++..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHHH
Confidence 46889999999999999999987654332 233443322211110 0000 0000000001111234566777
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhc
Q 044535 273 LRRKTVLIVLDDVENSQQLKNLAG 296 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~~~~l~~ 296 (1085)
++..+=.+|+|.+...+.++.+..
T Consensus 215 Lr~~pd~ii~gE~r~~e~~~~l~a 238 (308)
T TIGR02788 215 LRMRPDRIILGELRGDEAFDFIRA 238 (308)
T ss_pred hcCCCCeEEEeccCCHHHHHHHHH
Confidence 888888899999998776654443
No 458
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.72 E-value=0.55 Score=50.68 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=21.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
-.+++|+|..|.|||||++.++...
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 30 RQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3579999999999999999997643
No 459
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.71 E-value=0.56 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|+|..|.|||||++.++.
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999984
No 460
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.71 E-value=0.08 Score=54.06 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.+++.|+|+.|+|||||++.+.......|..++..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 36789999999999999999999888888644443
No 461
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.68 E-value=0.47 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
-.+++|+|..|.|||||++.++..
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 368999999999999999999754
No 462
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.68 E-value=0.09 Score=51.89 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+-|.++||.|+||||+.+++++...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998765554
No 463
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.60 E-value=0.24 Score=54.53 Aligned_cols=51 Identities=29% Similarity=0.348 Sum_probs=36.3
Q ss_pred HHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 180 VEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 180 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
...|...|. .+-+.-+++-|+|+.|+||||||..+.......-..++|++.
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~ 89 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA 89 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC
Confidence 344555554 222335789999999999999999999877666667788854
No 464
>PRK14530 adenylate kinase; Provisional
Probab=92.56 E-value=0.088 Score=55.36 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|.|+|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 465
>PLN02318 phosphoribulokinase/uridine kinase
Probab=92.53 E-value=0.13 Score=60.49 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=26.8
Q ss_pred hhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 186 LLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 186 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
++....+++.+|+|.|..|.||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 333344568899999999999999999998764
No 466
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.51 E-value=0.11 Score=53.46 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 467
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.50 E-value=0.12 Score=54.12 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=40.8
Q ss_pred CCCccccchhHHHHHHhhccC-----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 170 LDGLIGIESRVEKVESLLCIG-----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
..++=|.+..+++|.+..... -....-|.++|.+|.|||-||++|+|+.+..|-
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 345668889999888765421 123556779999999999999999998776664
No 468
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=92.50 E-value=0.23 Score=55.29 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=26.6
Q ss_pred CCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 191 LVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..+..+|+|.|.+|+|||||+..+...+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3467899999999999999999998877654
No 469
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.49 E-value=0.12 Score=51.26 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=22.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999876
No 470
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.47 E-value=0.26 Score=54.78 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.8
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHH
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
...+..+|..+-..-.++.|+|.+|+||||||..++.
T Consensus 82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 3455566655445568999999999999999998875
No 471
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.46 E-value=0.09 Score=51.34 Aligned_cols=20 Identities=35% Similarity=0.675 Sum_probs=18.5
Q ss_pred EEEEEecCCCcHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~ 215 (1085)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999887
No 472
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=92.46 E-value=0.68 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|+|..|.|||||++.++.
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~G 62 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLEN 62 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999985
No 473
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.44 E-value=0.07 Score=33.11 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=11.9
Q ss_pred ccEEecCCCccccccccccC
Q 044535 661 ITELDLGETAIEEVPPAIES 680 (1085)
Q Consensus 661 L~~L~Ls~~~i~~lp~~i~~ 680 (1085)
|++|++++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55566666666666665543
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.43 E-value=0.088 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..|.|+|+.|.||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998753
No 475
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.41 E-value=0.075 Score=58.15 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=67.7
Q ss_pred CccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHH
Q 044535 172 GLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRL 251 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~ 251 (1085)
.+.-.....+++.++|...-..-..|.|.|..|.||||++.++...+...-...+-+.+..+. .+. ..
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~----~l~--------~~ 172 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL----RLP--------GP 172 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S------S--------CS
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce----eec--------cc
Confidence 344334444556666543322347899999999999999999998776651233334332211 100 00
Q ss_pred hcCCCCCC-CCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEe
Q 044535 252 LEDGDLSL-GASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITS 311 (1085)
Q Consensus 252 ~~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTT 311 (1085)
.. ..... .........++..|+..+=.+|++.+.+.+.+..+... ..|..+-+||
T Consensus 173 ~~-~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT 228 (270)
T PF00437_consen 173 NQ-IQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTT 228 (270)
T ss_dssp SE-EEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEE
T ss_pred ce-EEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeee
Confidence 00 00000 12233456778888888889999999988877774433 2466663444
No 476
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.40 E-value=0.12 Score=53.99 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=24.1
Q ss_pred cCCCceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 189 IGLVDVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 189 ~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+....+.+.|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34456788999999999999999998754
No 477
>PRK13975 thymidylate kinase; Provisional
Probab=92.37 E-value=0.11 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.+|+|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998764
No 478
>PRK15453 phosphoribulokinase; Provisional
Probab=92.37 E-value=0.18 Score=54.01 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...+|+|.|.+|.||||+|+.+++.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999976643
No 479
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.34 E-value=0.06 Score=62.60 Aligned_cols=38 Identities=24% Similarity=0.047 Sum_probs=28.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCc-ceEEEeeh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFE-GCCFLENV 231 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~~~~ 231 (1085)
-+.++|+|.+|+|||||++.+++.+....+ ..+++..+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLI 454 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLV 454 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEE
Confidence 356789999999999999999997755433 33444433
No 480
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.33 E-value=0.43 Score=45.28 Aligned_cols=118 Identities=14% Similarity=0.227 Sum_probs=55.2
Q ss_pred cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcc-hhhcCCCCccEEEccCCCCcccCc-cccCCCCC
Q 044535 746 VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTPIKELPS-SIDHLPQL 823 (1085)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L 823 (1085)
+..+++|+.+.+.. .....-...+.++++|+.+.+..+ +..++ ..+..+++|+.+.+.+ .+..++. .+..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 55667788887764 222222344667778888888663 44433 3566677788888865 5554443 45568888
Q ss_pred CEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCC
Q 044535 824 SLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSL 875 (1085)
Q Consensus 824 ~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 875 (1085)
+.+.+..+ +..++...+.+. .|+.+.+.. .+..++. .+.++++|
T Consensus 84 ~~i~~~~~------~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN------ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT-------BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc------ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 88888653 234555556665 777777665 3444432 34444443
No 481
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.33 E-value=0.14 Score=57.66 Aligned_cols=53 Identities=28% Similarity=0.270 Sum_probs=40.7
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEE
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCF 227 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 227 (1085)
..++|.+..+..+...+..+ +-+.+.|++|+|||+||+.++..+...|..+-+
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 34889888888776666544 457799999999999999999988766654433
No 482
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.30 E-value=0.15 Score=50.23 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=23.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
+++|+|+.|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987655
No 483
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.29 E-value=0.32 Score=55.80 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHhhcCCceEEEEeCCCCHHH------HHHHhcCCCCCCCCCEEEEEeCChhhhhcCCCeEEEe
Q 044535 268 FMNTRLRRKTVLIVLDDVENSQQ------LKNLAGDHGWFGLGSRIIITSRDKQVLKTGVDEMYEV 327 (1085)
Q Consensus 268 ~l~~~l~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gs~IiiTTR~~~v~~~~~~~~~~l 327 (1085)
.+.+.|-.++-|+.||+-.+--+ ++.++.... .+ .++|++|+++.+..-..+++++
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d---~~-~lVi~sh~QDfln~vCT~Ii~l 292 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD---RI-ILVIVSHSQDFLNGVCTNIIHL 292 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc---Cc-eEEEEecchhhhhhHhhhhhee
Confidence 35556667899999998744322 344444332 22 6899999988777633334333
No 484
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.26 E-value=0.76 Score=45.98 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=23.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
+.|.|.+|.|||++|.++... ....++|+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEc
Confidence 578999999999999998765 2335666643
No 485
>PLN02796 D-glycerate 3-kinase
Probab=92.25 E-value=0.39 Score=53.27 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..-+|+|.|..|.||||||+.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 4678999999999999999999987754
No 486
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.25 E-value=0.1 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.116 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
+.+++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 457999999999999999998774
No 487
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.24 E-value=0.46 Score=58.45 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-..++|+|..|.|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999864
No 488
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.24 E-value=1.3 Score=49.92 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHhhccC-------CCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 181 EKVESLLCIG-------LVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 181 ~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
++|.++|..+ ...+.||-.+|.-|.||||.|-++++.++.
T Consensus 80 eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk 126 (451)
T COG0541 80 EELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK 126 (451)
T ss_pred HHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH
Confidence 4556666531 124678999999999999999999987766
No 489
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.23 E-value=0.37 Score=55.92 Aligned_cols=91 Identities=23% Similarity=0.299 Sum_probs=50.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCC---CCCCccc----
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLS---LGASGLG---- 265 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~---~~~~~~~---- 265 (1085)
-+.++|.|.+|+|||||+.++++....+ -+.++|+ .+++ ....+..+.+.+...-.-....- ..+....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 4678999999999999999999876543 3344444 2322 22334444444433211000000 0111111
Q ss_pred ----hHHHHHhh---cCCceEEEEeCCCC
Q 044535 266 ----HTFMNTRL---RRKTVLIVLDDVEN 287 (1085)
Q Consensus 266 ----~~~l~~~l---~~kr~LlVLDdv~~ 287 (1085)
.-.+.+++ +++++|+++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 12344555 27899999999954
No 490
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.21 E-value=0.65 Score=47.42 Aligned_cols=109 Identities=17% Similarity=0.193 Sum_probs=58.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc---Cc--ceEEEeehhhhhh-hhcHHHHHHHHHHHHhcCCCCCCCC-CccchH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ---FE--GCCFLENVREESA-KRGVHRLQEELFSRLLEDGDLSLGA-SGLGHT 267 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~---F~--~~~~~~~~~~~s~-~~~~~~l~~~ll~~~~~~~~~~~~~-~~~~~~ 267 (1085)
.-..|.|++|+|||||.+.+++-++.. |. .++.++...+... ..+..+.. +... .++.+ -.....
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~--~g~R------~dVld~cpk~~g 209 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHG--RGRR------MDVLDPCPKAEG 209 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhh--hhhh------hhhcccchHHHH
Confidence 346689999999999999999865443 43 2333332222111 01111111 1111 11111 111122
Q ss_pred HHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 044535 268 FMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDK 314 (1085)
Q Consensus 268 ~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 314 (1085)
++...-...+=.+|.|.+-..++..++.... ..|-++|.|.--.
T Consensus 210 mmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 210 MMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 2223333467789999998888777766654 3577877776543
No 491
>PRK13768 GTPase; Provisional
Probab=92.15 E-value=0.19 Score=54.21 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
.++.|.|+||+||||++..+....+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 578999999999999999998866554
No 492
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.15 E-value=0.26 Score=54.24 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=36.7
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
...+.++=.......+...+..+ +.|.|.|.+|+||||+|+.++.++...|-
T Consensus 42 ~~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 42 DIDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 33344444444556666666432 45889999999999999999998875554
No 493
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.14 E-value=0.12 Score=53.50 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
--++||+|.+|.||||||+.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 36899999999999999999974
No 494
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.12 E-value=0.18 Score=51.58 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHH
Q 044535 170 LDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
..+++|-+..+..++-.... .+-+.++|.+|+|||++|+.+..
T Consensus 2 f~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 45688988888877765542 35788999999999999999875
No 495
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.22 Score=54.57 Aligned_cols=71 Identities=23% Similarity=0.309 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhccC----------CCceEEEEEEecCCCcHHHHHHHHH
Q 044535 146 SEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCIG----------LVDVHIVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 146 ~e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~ 215 (1085)
+++.+++-+-.+|..+- +-..=+++.|.+...+-|++..... ...-+-|.++|++|.|||.||++||
T Consensus 190 ~d~~Lve~lerdIl~~n---p~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 190 YDADLVEALERDILQRN---PNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred chHHHHHHHHHHHhccC---CCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHH
Confidence 45555555555554432 2233467888888777776643321 1234668899999999999999999
Q ss_pred HHHh
Q 044535 216 DRIA 219 (1085)
Q Consensus 216 ~~~~ 219 (1085)
..-.
T Consensus 267 TEc~ 270 (491)
T KOG0738|consen 267 TECG 270 (491)
T ss_pred Hhhc
Confidence 8765
No 496
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.06 E-value=0.21 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+.++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 56889999999999999999987643
No 497
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.06 E-value=0.11 Score=52.35 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+.|+|+.|.||||+|+.+++++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998863
No 498
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.05 E-value=0.24 Score=53.66 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=29.9
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEE
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCF 227 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~ 227 (1085)
.++.+|.|.|.+|.|||||+..+.+.+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468999999999999999999999988766543333
No 499
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.05 E-value=0.52 Score=48.13 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...+++|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999998764
No 500
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=92.05 E-value=1.8 Score=50.08 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-..|+++|+.|+|||||.+.++-
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~g 438 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITG 438 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhh
Confidence 35688999999999999998874
Done!