Query 044535
Match_columns 1085
No_of_seqs 979 out of 6764
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 2.5E-46 8.7E-51 366.0 11.9 160 1-167 15-175 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1E-44 3.5E-49 359.3 10.2 159 1-164 42-202 (204)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-40 6.1E-45 399.5 22.0 300 174-485 131-473 (549)
4 3rgz_A Protein brassinosteroid 100.0 2.3E-34 7.8E-39 362.3 32.8 429 518-973 156-702 (768)
5 3rgz_A Protein brassinosteroid 100.0 3.8E-34 1.3E-38 360.3 27.1 405 518-937 228-724 (768)
6 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-34 1.1E-38 383.2 22.4 307 165-483 118-452 (1249)
7 1vt4_I APAF-1 related killer D 100.0 1.2E-34 4E-39 349.7 14.0 278 171-476 128-436 (1221)
8 3t6q_A CD180 antigen; protein- 100.0 1.3E-32 4.5E-37 338.3 31.5 423 516-958 36-512 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-32 5.1E-37 337.8 30.7 418 517-959 36-534 (606)
10 4eco_A Uncharacterized protein 100.0 8.6E-34 2.9E-38 348.7 19.2 335 584-928 197-598 (636)
11 3t6q_A CD180 antigen; protein- 100.0 8.5E-32 2.9E-36 331.1 32.4 421 518-959 86-560 (606)
12 4eco_A Uncharacterized protein 100.0 9.3E-33 3.2E-37 339.5 22.8 398 537-959 81-600 (636)
13 1z6t_A APAF-1, apoptotic prote 100.0 4.3E-33 1.5E-37 340.8 19.6 302 165-479 118-448 (591)
14 4ecn_A Leucine-rich repeat pro 100.0 3E-31 1E-35 331.0 31.5 340 580-931 435-841 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 3E-31 1E-35 326.2 29.0 415 517-959 60-558 (606)
16 2z63_A TOLL-like receptor 4, v 100.0 2.4E-31 8.1E-36 324.7 26.9 419 517-959 32-531 (570)
17 1ziw_A TOLL-like receptor 3; i 100.0 3.6E-30 1.2E-34 321.0 37.1 423 517-959 29-573 (680)
18 4ecn_A Leucine-rich repeat pro 100.0 1.4E-31 4.8E-36 333.9 24.1 397 537-959 323-840 (876)
19 2z81_A CD282 antigen, TOLL-lik 100.0 2.3E-31 7.7E-36 323.2 22.9 391 517-927 30-483 (549)
20 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-30 1.8E-34 319.5 35.1 395 518-927 78-594 (680)
21 2z81_A CD282 antigen, TOLL-lik 100.0 3.1E-30 1.1E-34 313.2 29.2 406 537-974 26-496 (549)
22 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-30 1.2E-34 327.4 31.0 400 517-935 28-521 (844)
23 2z7x_B TOLL-like receptor 1, v 100.0 4E-31 1.4E-35 318.7 18.3 414 517-959 25-481 (520)
24 2z63_A TOLL-like receptor 4, v 100.0 4.5E-30 1.5E-34 313.4 27.2 399 517-935 56-536 (570)
25 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-29 1.6E-33 317.2 33.0 349 535-905 22-437 (844)
26 1o6v_A Internalin A; bacterial 100.0 7E-29 2.4E-33 294.2 31.1 339 535-905 44-386 (466)
27 3v47_A TOLL-like receptor 5B a 100.0 5.9E-29 2E-33 294.5 26.4 338 570-934 30-412 (455)
28 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-28 6.2E-33 295.4 28.9 370 570-959 21-457 (520)
29 1o6v_A Internalin A; bacterial 100.0 6.6E-28 2.2E-32 285.8 30.4 338 570-930 46-388 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 3.4E-28 1.2E-32 285.7 26.9 326 571-929 12-369 (454)
31 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-28 7.1E-33 297.5 25.1 392 517-931 56-511 (562)
32 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.2E-28 3.1E-32 291.8 26.9 391 539-959 33-510 (562)
33 3v47_A TOLL-like receptor 5B a 100.0 2.7E-27 9.2E-32 280.2 27.1 343 517-906 34-407 (455)
34 4fmz_A Internalin; leucine ric 100.0 6.7E-27 2.3E-31 266.2 26.9 296 572-905 46-344 (347)
35 1jl5_A Outer protein YOPM; leu 100.0 5.8E-27 2E-31 275.2 26.8 358 530-935 27-416 (454)
36 2id5_A Lingo-1, leucine rich r 100.0 5E-27 1.7E-31 279.5 26.5 306 573-906 14-332 (477)
37 4fmz_A Internalin; leucine ric 99.9 2.3E-26 7.7E-31 261.8 28.6 307 532-887 39-347 (347)
38 3o6n_A APL1; leucine-rich repe 99.9 1.3E-26 4.3E-31 268.4 25.6 299 571-905 46-350 (390)
39 3bz5_A Internalin-J, INLJ; leu 99.9 3.1E-26 1.1E-30 269.2 25.2 304 532-905 37-350 (457)
40 3oja_B Anopheles plasmodium-re 99.9 2.8E-26 9.6E-31 280.3 25.7 301 591-906 50-357 (597)
41 3o6n_A APL1; leucine-rich repe 99.9 3E-26 1E-30 265.2 23.3 307 535-888 43-354 (390)
42 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-25 3.9E-30 278.1 27.3 399 517-929 56-579 (635)
43 3bz5_A Internalin-J, INLJ; leu 99.9 5.7E-26 2E-30 266.9 23.1 345 517-936 46-393 (457)
44 2id5_A Lingo-1, leucine rich r 99.9 1.2E-25 4E-30 267.7 24.7 295 568-888 30-335 (477)
45 3oja_B Anopheles plasmodium-re 99.9 2E-25 6.9E-30 272.7 24.4 300 571-888 52-360 (597)
46 1xku_A Decorin; proteoglycan, 99.9 6.9E-25 2.3E-29 247.5 26.4 284 571-884 32-330 (330)
47 2ft3_A Biglycan; proteoglycan, 99.9 7.6E-25 2.6E-29 247.4 22.1 282 571-883 34-330 (332)
48 4g8a_A TOLL-like receptor 4; l 99.9 6.2E-24 2.1E-28 262.5 27.7 374 517-905 80-578 (635)
49 1xku_A Decorin; proteoglycan, 99.9 4.4E-23 1.5E-27 232.7 27.4 279 639-927 32-329 (330)
50 3h16_A TIR protein; bacteria T 99.9 8.9E-26 3E-30 221.7 3.5 108 1-111 27-135 (154)
51 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-23 1E-27 234.3 22.8 259 660-928 55-331 (332)
52 1ogq_A PGIP-2, polygalacturona 99.9 7E-24 2.4E-28 236.9 15.2 242 659-907 50-304 (313)
53 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-22 5.5E-27 244.4 26.3 261 570-889 40-300 (622)
54 1ogq_A PGIP-2, polygalacturona 99.9 9.1E-24 3.1E-28 236.0 13.9 252 592-890 50-309 (313)
55 4fcg_A Uncharacterized protein 99.9 8.1E-23 2.8E-27 229.6 17.8 230 570-832 81-312 (328)
56 1z7x_W Ribonuclease inhibitor; 99.9 1E-24 3.5E-29 258.5 0.9 314 571-905 29-409 (461)
57 4fcg_A Uncharacterized protein 99.9 3.3E-22 1.1E-26 224.7 19.4 197 660-884 82-288 (328)
58 3g06_A SSPH2 (leucine-rich rep 99.9 2.4E-21 8.1E-26 234.2 27.2 256 615-907 40-297 (622)
59 1z7x_W Ribonuclease inhibitor; 99.9 4.6E-24 1.6E-28 252.9 -0.0 343 570-929 3-410 (461)
60 2z80_A TOLL-like receptor 2, v 99.9 1.9E-21 6.6E-26 221.4 19.8 270 574-887 35-315 (353)
61 2z66_A Variable lymphocyte rec 99.9 2.6E-21 9E-26 215.7 19.6 235 663-905 11-259 (306)
62 3zyi_A Leucine-rich repeat-con 99.9 8.7E-21 3E-25 223.6 24.3 237 641-905 57-301 (452)
63 2z66_A Variable lymphocyte rec 99.9 2.1E-21 7.2E-26 216.4 17.7 247 573-888 10-263 (306)
64 3zyj_A Leucine-rich repeat-con 99.9 7.8E-21 2.7E-25 223.2 23.2 237 641-905 46-290 (440)
65 2z80_A TOLL-like receptor 2, v 99.9 6.7E-22 2.3E-26 225.2 13.6 268 591-908 30-315 (353)
66 3o53_A Protein LRIM1, AGAP0063 99.8 9.9E-22 3.4E-26 220.0 9.2 239 660-911 35-279 (317)
67 1ozn_A Reticulon 4 receptor; N 99.8 5.7E-20 2E-24 202.5 21.7 216 662-905 14-236 (285)
68 3zyi_A Leucine-rich repeat-con 99.8 6E-20 2E-24 216.5 23.1 123 572-716 56-181 (452)
69 3zyj_A Leucine-rich repeat-con 99.8 6.8E-20 2.3E-24 215.2 21.2 244 572-863 45-292 (440)
70 1wwl_A Monocyte differentiatio 99.8 2.1E-21 7.2E-26 216.8 7.6 197 680-886 93-309 (312)
71 1wwl_A Monocyte differentiatio 99.8 2.1E-21 7.3E-26 216.8 7.6 244 571-864 44-310 (312)
72 3oja_A Leucine-rich immune mol 99.8 5.2E-21 1.8E-25 226.8 10.8 233 660-905 35-273 (487)
73 1ozn_A Reticulon 4 receptor; N 99.8 2.6E-19 8.8E-24 197.2 22.1 212 652-887 24-239 (285)
74 3o53_A Protein LRIM1, AGAP0063 99.8 3.1E-21 1.1E-25 216.0 6.1 256 593-883 11-272 (317)
75 3ogk_B Coronatine-insensitive 99.8 3.2E-21 1.1E-25 236.2 1.2 395 531-928 67-524 (592)
76 2z62_A TOLL-like receptor 4, v 99.8 1.1E-18 3.7E-23 191.3 19.7 155 746-905 72-235 (276)
77 3oja_A Leucine-rich immune mol 99.8 3.2E-19 1.1E-23 211.4 15.5 222 672-907 20-250 (487)
78 2o6q_A Variable lymphocyte rec 99.8 4E-18 1.4E-22 186.0 22.5 199 660-886 17-218 (270)
79 3ogk_B Coronatine-insensitive 99.8 7.7E-21 2.6E-25 232.7 0.8 358 535-905 110-524 (592)
80 3ub2_A TOLL/interleukin-1 rece 99.8 1.5E-20 5.3E-25 180.9 1.1 122 1-129 17-145 (146)
81 1p9a_G Platelet glycoprotein I 99.8 4.3E-18 1.5E-22 187.4 20.9 197 660-886 11-208 (290)
82 2p1m_B Transport inhibitor res 99.8 1.4E-20 4.6E-25 230.7 -0.4 393 531-929 60-518 (594)
83 2xwt_C Thyrotropin receptor; s 99.8 4.5E-18 1.5E-22 182.0 16.9 204 651-906 23-238 (239)
84 2o6q_A Variable lymphocyte rec 99.8 1.7E-17 5.9E-22 180.9 21.7 172 729-905 39-216 (270)
85 2p1m_B Transport inhibitor res 99.8 1.8E-20 6.3E-25 229.5 -2.8 355 534-906 102-518 (594)
86 2z62_A TOLL-like receptor 4, v 99.8 7.7E-18 2.6E-22 184.5 17.8 208 653-887 21-238 (276)
87 2xwt_C Thyrotropin receptor; s 99.8 3.6E-18 1.2E-22 182.7 14.4 204 719-930 23-239 (239)
88 1p9a_G Platelet glycoprotein I 99.8 2.3E-17 8E-22 181.5 20.5 168 730-905 34-206 (290)
89 1h6u_A Internalin H; cell adhe 99.7 2.2E-17 7.4E-22 183.7 18.9 190 662-889 44-233 (308)
90 2ast_B S-phase kinase-associat 99.7 1.2E-18 4.3E-23 196.8 8.4 251 593-889 48-309 (336)
91 2ca6_A RAN GTPase-activating p 99.7 3.2E-19 1.1E-23 205.7 3.5 211 593-832 10-255 (386)
92 3rfs_A Internalin B, repeat mo 99.7 1.5E-17 5.2E-22 181.6 16.4 202 678-912 37-240 (272)
93 1h6u_A Internalin H; cell adhe 99.7 7E-17 2.4E-21 179.5 18.8 189 702-905 37-228 (308)
94 4glp_A Monocyte differentiatio 99.7 9.5E-18 3.2E-22 187.0 11.2 201 681-905 90-305 (310)
95 4ay9_X Follicle-stimulating ho 99.7 1.2E-16 3.9E-21 181.4 19.0 228 651-925 21-254 (350)
96 3rfs_A Internalin B, repeat mo 99.7 1.2E-16 4E-21 174.5 17.6 177 702-907 37-218 (272)
97 2ca6_A RAN GTPase-activating p 99.7 1.4E-18 4.6E-23 200.5 1.9 250 666-928 16-314 (386)
98 3m19_A Variable lymphocyte rec 99.7 1.9E-16 6.4E-21 170.6 18.3 168 731-905 18-190 (251)
99 2ast_B S-phase kinase-associat 99.7 4.8E-18 1.6E-22 192.0 3.8 200 682-904 70-282 (336)
100 4glp_A Monocyte differentiatio 99.7 2.7E-16 9.3E-21 175.2 17.0 227 592-863 64-307 (310)
101 4ay9_X Follicle-stimulating ho 99.7 9.6E-17 3.3E-21 182.1 12.8 239 573-860 12-256 (350)
102 3m19_A Variable lymphocyte rec 99.7 8.2E-16 2.8E-20 165.6 18.6 177 683-888 15-194 (251)
103 3goz_A Leucine-rich repeat-con 99.7 8.1E-18 2.8E-22 191.9 2.3 134 750-888 138-299 (362)
104 3goz_A Leucine-rich repeat-con 99.7 3.1E-17 1.1E-21 187.1 4.8 244 664-928 3-295 (362)
105 1fyx_A TOLL-like receptor 2; b 99.6 1.7E-17 5.8E-22 161.0 0.6 93 1-97 12-110 (149)
106 3cvr_A Invasion plasmid antige 99.6 2.2E-15 7.7E-20 179.7 18.8 181 660-888 60-245 (571)
107 1h6t_A Internalin B; cell adhe 99.6 1.7E-15 5.9E-20 166.7 14.7 145 748-905 66-211 (291)
108 1t3g_A X-linked interleukin-1 99.6 1.3E-16 4.4E-21 156.2 4.2 93 1-95 9-115 (159)
109 1h6t_A Internalin B; cell adhe 99.6 5.4E-15 1.8E-19 162.8 17.5 176 702-892 42-219 (291)
110 3cvr_A Invasion plasmid antige 99.6 3.5E-15 1.2E-19 178.0 17.1 179 683-911 60-247 (571)
111 1m9s_A Internalin B; cell inva 99.6 2.6E-15 8.7E-20 181.3 15.7 197 665-899 27-223 (605)
112 2j67_A TOLL like receptor 10; 99.6 1.3E-16 4.3E-21 158.8 2.6 89 1-92 42-134 (178)
113 2qen_A Walker-type ATPase; unk 99.6 1.5E-14 5.2E-19 164.1 20.1 291 165-477 6-349 (350)
114 1dce_A Protein (RAB geranylger 99.6 1.5E-17 5.1E-22 199.7 -5.8 196 659-900 349-566 (567)
115 2js7_A Myeloid differentiation 99.6 1.5E-16 5E-21 155.9 1.9 91 1-94 23-117 (160)
116 1m9s_A Internalin B; cell inva 99.6 1.2E-14 4.2E-19 175.4 17.3 165 729-907 45-210 (605)
117 2fna_A Conserved hypothetical 99.6 3.4E-14 1.1E-18 161.7 19.2 290 165-476 7-356 (357)
118 2o6s_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 150.0 15.2 171 731-912 11-183 (208)
119 1xeu_A Internalin C; cellular 99.6 1.4E-14 4.8E-19 156.8 13.4 164 728-906 20-184 (263)
120 1dce_A Protein (RAB geranylger 99.6 1.9E-16 6.5E-21 190.1 -2.1 215 590-857 347-567 (567)
121 4ezg_A Putative uncharacterize 99.5 2.5E-14 8.6E-19 147.7 13.8 149 747-905 41-192 (197)
122 2v9t_B SLIT homolog 2 protein 99.5 3.3E-14 1.1E-18 149.4 14.6 150 731-887 15-166 (220)
123 4ezg_A Putative uncharacterize 99.5 2.1E-14 7E-19 148.3 12.0 154 703-887 41-195 (197)
124 2o6s_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 147.7 13.8 177 662-873 10-189 (208)
125 1w5s_A Origin recognition comp 99.5 2.3E-13 7.8E-18 158.2 21.7 284 169-462 20-371 (412)
126 2xot_A Amphoterin-induced prot 99.5 2.4E-14 8.2E-19 162.9 12.7 172 709-886 21-202 (361)
127 2v70_A SLIT-2, SLIT homolog 2 99.5 8.5E-14 2.9E-18 146.3 14.4 149 731-886 15-166 (220)
128 3e6j_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 144.7 16.2 127 774-905 40-170 (229)
129 1xeu_A Internalin C; cellular 99.5 3E-14 1E-18 154.2 9.3 135 746-894 59-193 (263)
130 2xot_A Amphoterin-induced prot 99.5 1.2E-13 4.2E-18 157.1 14.5 174 662-863 21-202 (361)
131 3e6j_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 141.9 15.4 148 732-887 24-173 (229)
132 2v70_A SLIT-2, SLIT homolog 2 99.5 5E-13 1.7E-17 140.4 14.9 130 729-863 34-166 (220)
133 2v9t_B SLIT homolog 2 protein 99.4 6.3E-13 2.2E-17 139.6 14.8 131 728-863 33-165 (220)
134 2qby_B CDC6 homolog 3, cell di 99.4 1.1E-11 3.9E-16 142.3 26.4 277 171-462 20-339 (384)
135 2ell_A Acidic leucine-rich nuc 99.4 4.7E-13 1.6E-17 134.2 11.8 120 741-867 40-164 (168)
136 2ell_A Acidic leucine-rich nuc 99.4 4.6E-13 1.6E-17 134.3 10.9 135 748-889 22-163 (168)
137 4b8c_D Glucose-repressible alc 99.4 1.9E-13 6.6E-18 169.3 4.4 113 697-832 215-327 (727)
138 2qby_A CDC6 homolog 1, cell di 99.3 2E-11 6.9E-16 140.2 20.3 282 169-461 18-347 (386)
139 2je0_A Acidic leucine-rich nuc 99.3 2.5E-12 8.5E-17 126.0 9.8 111 741-858 33-148 (149)
140 2v1u_A Cell division control p 99.3 3E-11 1E-15 138.8 20.3 280 169-462 17-351 (387)
141 3sb4_A Hypothetical leucine ri 99.3 2.6E-12 8.8E-17 144.2 10.9 122 772-900 200-327 (329)
142 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6E-17 127.1 7.5 125 750-881 17-148 (149)
143 4b8c_D Glucose-repressible alc 99.3 1E-12 3.6E-17 162.7 4.3 113 743-863 217-329 (727)
144 1a9n_A U2A', U2A'; complex (nu 99.3 5.4E-12 1.9E-16 127.4 8.4 101 799-905 43-151 (176)
145 1w8a_A SLIT protein; signaling 99.2 2.5E-11 8.7E-16 124.3 11.7 89 794-887 50-140 (192)
146 1w8a_A SLIT protein; signaling 99.2 4.8E-11 1.7E-15 122.3 12.5 102 799-905 30-137 (192)
147 2wfh_A SLIT homolog 2 protein 99.2 5E-11 1.7E-15 122.2 12.5 107 775-887 32-140 (193)
148 1njg_A DNA polymerase III subu 99.2 2.2E-10 7.6E-15 122.2 17.4 198 167-377 19-230 (250)
149 1a9n_A U2A', U2A'; complex (nu 99.2 3.1E-11 1.1E-15 121.8 9.3 105 775-886 43-153 (176)
150 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 118.1 13.0 109 774-887 28-138 (177)
151 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 4.2E-15 119.2 13.5 104 729-832 33-137 (193)
152 3sb4_A Hypothetical leucine ri 99.2 4.3E-11 1.5E-15 134.1 9.8 101 773-880 225-328 (329)
153 1fnn_A CDC6P, cell division co 99.2 4.1E-10 1.4E-14 129.4 17.6 282 170-462 16-351 (389)
154 2o6r_A Variable lymphocyte rec 99.1 4E-10 1.4E-14 113.8 14.5 122 777-906 10-136 (177)
155 2chg_A Replication factor C sm 99.1 6.7E-10 2.3E-14 116.6 14.7 185 167-374 13-203 (226)
156 1ds9_A Outer arm dynein; leuci 99.1 5.1E-13 1.7E-17 137.9 -10.6 109 769-886 43-153 (198)
157 1ds9_A Outer arm dynein; leuci 99.1 2.2E-12 7.5E-17 133.1 -6.1 133 738-879 36-180 (198)
158 1sxj_B Activator 1 37 kDa subu 99.0 3.4E-09 1.2E-13 118.3 14.1 185 167-375 17-210 (323)
159 2r9u_A Variable lymphocyte rec 99.0 2.9E-09 9.9E-14 106.9 11.8 102 777-886 15-118 (174)
160 3g39_A Variable lymphocyte rec 99.0 2.9E-09 9.7E-14 106.5 11.7 103 776-886 11-115 (170)
161 4fdw_A Leucine rich hypothetic 98.9 3.4E-08 1.2E-12 113.1 21.2 80 816-903 295-379 (401)
162 4fdw_A Leucine rich hypothetic 98.9 5.7E-08 2E-12 111.2 22.0 128 770-904 222-355 (401)
163 2r9u_A Variable lymphocyte rec 98.9 7E-09 2.4E-13 104.1 11.3 99 732-832 17-116 (174)
164 4fs7_A Uncharacterized protein 98.9 5.3E-08 1.8E-12 111.8 19.9 145 747-903 227-375 (394)
165 3g39_A Variable lymphocyte rec 98.9 6.8E-09 2.3E-13 103.8 10.6 100 731-832 13-113 (170)
166 1iqp_A RFCS; clamp loader, ext 98.8 1.8E-08 6.3E-13 112.5 13.8 185 167-375 21-212 (327)
167 3un9_A NLR family member X1; l 98.8 8.6E-10 2.9E-14 125.1 -0.1 139 750-889 101-255 (372)
168 1hqc_A RUVB; extended AAA-ATPa 98.7 2.4E-07 8.2E-12 103.3 17.6 262 167-475 8-311 (324)
169 2ifg_A High affinity nerve gro 98.7 4.2E-08 1.4E-12 110.6 11.1 103 779-887 13-117 (347)
170 3un9_A NLR family member X1; l 98.7 2.4E-09 8.1E-14 121.4 0.2 156 749-905 71-250 (372)
171 4fs7_A Uncharacterized protein 98.6 8E-07 2.7E-11 101.9 19.7 166 745-925 203-374 (394)
172 2ra8_A Uncharacterized protein 98.6 3.6E-08 1.2E-12 110.7 7.5 140 742-888 164-322 (362)
173 2chq_A Replication factor C sm 98.6 5.7E-07 1.9E-11 99.9 16.0 179 166-374 12-203 (319)
174 2ifg_A High affinity nerve gro 98.5 1.7E-07 6E-12 105.5 10.4 99 733-832 14-114 (347)
175 2ra8_A Uncharacterized protein 98.5 5.3E-08 1.8E-12 109.3 5.8 181 674-884 131-341 (362)
176 1jr3_A DNA polymerase III subu 98.5 5.7E-07 1.9E-11 102.4 14.4 195 168-375 13-221 (373)
177 1jbk_A CLPB protein; beta barr 98.5 1.8E-07 6.3E-12 95.2 7.8 51 168-220 19-69 (195)
178 4gt6_A Cell surface protein; l 98.5 7.7E-06 2.6E-10 93.7 21.5 124 769-901 260-385 (394)
179 3pfi_A Holliday junction ATP-d 98.4 5.9E-06 2E-10 92.5 18.7 248 167-462 25-313 (338)
180 1sxj_D Activator 1 41 kDa subu 98.4 8.7E-06 3E-10 91.7 18.5 195 167-374 33-234 (353)
181 3d8b_A Fidgetin-like protein 1 98.4 6.4E-06 2.2E-10 92.6 17.2 201 146-376 62-296 (357)
182 1sxj_A Activator 1 95 kDa subu 98.3 4.1E-06 1.4E-10 99.2 15.8 191 167-375 35-253 (516)
183 3h4m_A Proteasome-activating n 98.3 4.1E-06 1.4E-10 91.2 14.6 181 166-373 12-229 (285)
184 1d2n_A N-ethylmaleimide-sensit 98.3 9.5E-06 3.2E-10 87.6 16.9 168 171-367 33-229 (272)
185 3bos_A Putative DNA replicatio 98.3 9.4E-07 3.2E-11 93.6 8.2 173 168-374 25-216 (242)
186 3eie_A Vacuolar protein sortin 98.3 2.6E-05 8.7E-10 86.5 19.6 182 166-374 13-227 (322)
187 3te6_A Regulatory protein SIR3 98.3 3.5E-06 1.2E-10 91.8 11.8 162 172-343 21-211 (318)
188 1sxj_E Activator 1 40 kDa subu 98.2 6.4E-06 2.2E-10 92.8 13.7 197 167-373 10-235 (354)
189 2z4s_A Chromosomal replication 98.2 7.4E-06 2.5E-10 94.7 13.4 180 170-372 104-303 (440)
190 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.9E-05 9.8E-10 83.3 17.3 182 169-374 4-221 (262)
191 4gt6_A Cell surface protein; l 98.2 0.00018 6.2E-09 82.2 24.6 105 792-904 259-367 (394)
192 2qp9_X Vacuolar protein sortin 98.2 3.5E-05 1.2E-09 86.5 17.6 183 167-375 47-261 (355)
193 3uk6_A RUVB-like 2; hexameric 98.2 2.3E-05 8E-10 88.7 16.4 201 170-374 43-302 (368)
194 1l8q_A Chromosomal replication 98.1 6.3E-05 2.1E-09 83.5 18.5 176 169-369 9-202 (324)
195 3b9p_A CG5977-PA, isoform A; A 98.1 3.4E-05 1.1E-09 84.5 15.9 195 154-375 3-233 (297)
196 4h09_A Hypothetical leucine ri 98.1 7.4E-05 2.5E-09 84.9 19.4 82 794-882 259-342 (379)
197 2p65_A Hypothetical protein PF 98.1 1.2E-05 4E-10 81.1 11.4 50 169-220 20-69 (187)
198 2zan_A Vacuolar protein sortin 98.1 6.9E-05 2.4E-09 86.7 18.6 185 166-374 129-344 (444)
199 1xwi_A SKD1 protein; VPS4B, AA 98.1 6.7E-05 2.3E-09 82.9 17.7 182 168-375 9-223 (322)
200 3u61_B DNA polymerase accessor 98.1 1.7E-05 5.9E-10 88.0 12.9 177 167-370 22-211 (324)
201 3pvs_A Replication-associated 98.1 2.5E-05 8.6E-10 90.0 14.3 176 167-372 22-212 (447)
202 3vfd_A Spastin; ATPase, microt 98.1 7.4E-05 2.5E-09 85.1 17.8 184 166-375 110-326 (389)
203 4h09_A Hypothetical leucine ri 98.0 0.00027 9.2E-09 80.2 22.4 145 747-901 191-340 (379)
204 3syl_A Protein CBBX; photosynt 98.0 1.8E-05 6.2E-10 87.2 11.6 149 172-344 32-218 (309)
205 3cf0_A Transitional endoplasmi 98.0 9.7E-05 3.3E-09 80.9 16.7 154 168-344 12-200 (301)
206 1io0_A Tropomodulin; LRR prote 97.8 4.7E-06 1.6E-10 84.1 2.5 116 769-885 31-163 (185)
207 1a5t_A Delta prime, HOLB; zinc 97.8 0.00022 7.6E-09 79.2 16.3 171 178-375 9-205 (334)
208 1sxj_C Activator 1 40 kDa subu 97.8 0.0002 6.8E-09 79.9 15.4 181 168-371 22-208 (340)
209 1io0_A Tropomodulin; LRR prote 97.8 4.8E-06 1.6E-10 84.1 1.5 118 745-863 31-164 (185)
210 1in4_A RUVB, holliday junction 97.8 0.00049 1.7E-08 76.4 17.9 264 168-476 22-325 (334)
211 3pxg_A Negative regulator of g 97.8 0.00015 5E-09 84.6 14.2 148 168-343 177-338 (468)
212 4b4t_J 26S protease regulatory 97.7 0.00067 2.3E-08 75.6 16.1 172 168-368 145-354 (405)
213 3e4g_A ATP synthase subunit S, 97.6 1.4E-05 4.8E-10 78.6 1.9 34 799-832 62-96 (176)
214 3n70_A Transport activator; si 97.6 3.8E-05 1.3E-09 74.0 4.9 47 172-218 2-48 (145)
215 3ec2_A DNA replication protein 97.6 0.00015 5.2E-09 72.6 9.5 50 170-219 9-63 (180)
216 4b4t_M 26S protease regulatory 97.6 0.00027 9.3E-09 80.1 11.9 172 167-367 177-386 (434)
217 1lv7_A FTSH; alpha/beta domain 97.6 0.00064 2.2E-08 72.4 14.4 153 167-343 8-195 (257)
218 3hu3_A Transitional endoplasmi 97.6 0.00058 2E-08 79.5 14.9 179 170-374 203-414 (489)
219 4b4t_L 26S protease subunit RP 97.5 0.00092 3.2E-08 75.8 15.5 171 169-368 179-387 (437)
220 3e4g_A ATP synthase subunit S, 97.5 4.2E-05 1.4E-09 75.2 3.5 93 682-789 61-154 (176)
221 1qvr_A CLPB protein; coiled co 97.5 0.00027 9.2E-09 89.0 11.8 51 168-220 167-217 (854)
222 4b4t_H 26S protease regulatory 97.5 0.0013 4.4E-08 74.4 15.7 170 169-367 207-414 (467)
223 1ofh_A ATP-dependent HSL prote 97.5 0.00016 5.5E-09 79.5 8.0 50 171-220 15-76 (310)
224 3rw6_A Nuclear RNA export fact 97.5 1.8E-05 6.1E-10 84.0 0.1 37 796-832 168-207 (267)
225 2ce7_A Cell division protein F 97.5 0.00062 2.1E-08 78.5 12.9 173 169-368 14-221 (476)
226 2w58_A DNAI, primosome compone 97.5 0.00036 1.2E-08 71.3 9.9 60 169-228 23-88 (202)
227 2r62_A Cell division protease 97.4 8.9E-05 3.1E-09 79.7 4.9 153 168-343 8-196 (268)
228 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00088 3E-08 83.4 14.2 154 168-343 183-362 (758)
229 3pxi_A Negative regulator of g 97.4 0.00078 2.7E-08 83.8 13.7 148 168-343 177-338 (758)
230 4fcw_A Chaperone protein CLPB; 97.4 0.0009 3.1E-08 73.5 12.8 50 172-221 18-74 (311)
231 4b4t_I 26S protease regulatory 97.3 0.0013 4.5E-08 73.6 13.2 170 169-367 180-387 (437)
232 2gno_A DNA polymerase III, gam 97.3 0.00081 2.8E-08 73.2 11.2 145 175-343 1-152 (305)
233 4b4t_K 26S protease regulatory 97.3 0.0015 5.1E-08 74.0 13.7 54 169-222 170-234 (428)
234 3co5_A Putative two-component 97.2 9.1E-05 3.1E-09 71.1 2.0 48 171-218 4-51 (143)
235 2c9o_A RUVB-like 1; hexameric 97.1 0.0016 5.4E-08 75.7 11.3 50 170-219 36-88 (456)
236 2bjv_A PSP operon transcriptio 97.1 0.0013 4.4E-08 70.4 9.8 50 170-219 5-54 (265)
237 1ixz_A ATP-dependent metallopr 97.1 0.0067 2.3E-07 64.2 15.3 153 168-343 13-199 (254)
238 2kjq_A DNAA-related protein; s 97.1 0.00048 1.7E-08 66.3 5.6 35 194-228 36-70 (149)
239 3rw6_A Nuclear RNA export fact 97.1 0.00038 1.3E-08 73.8 5.2 38 747-784 167-206 (267)
240 1iy2_A ATP-dependent metallopr 97.0 0.0068 2.3E-07 65.2 14.7 155 166-343 35-223 (278)
241 3m6a_A ATP-dependent protease 97.0 0.0046 1.6E-07 73.2 13.9 51 172-222 82-136 (543)
242 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0058 2E-07 70.9 13.6 151 167-344 27-215 (499)
243 3cf2_A TER ATPase, transitiona 96.9 0.0037 1.3E-07 76.3 12.5 170 170-368 203-407 (806)
244 1ojl_A Transcriptional regulat 96.9 0.0025 8.4E-08 69.6 10.0 48 171-218 2-49 (304)
245 3t15_A Ribulose bisphosphate c 96.8 0.005 1.7E-07 66.7 11.6 30 193-222 35-64 (293)
246 3pxi_A Negative regulator of g 96.8 0.0032 1.1E-07 78.2 11.3 148 171-342 491-674 (758)
247 2x8a_A Nuclear valosin-contain 96.6 0.032 1.1E-06 59.6 15.9 124 197-343 47-191 (274)
248 1ypw_A Transitional endoplasmi 96.5 0.0081 2.8E-07 74.6 11.7 151 169-343 202-385 (806)
249 1um8_A ATP-dependent CLP prote 96.2 0.0049 1.7E-07 69.6 6.7 25 195-219 73-97 (376)
250 2cvh_A DNA repair and recombin 96.2 0.0062 2.1E-07 62.8 7.0 33 194-229 20-52 (220)
251 1vma_A Cell division protein F 96.2 0.048 1.7E-06 59.0 14.2 44 178-221 82-131 (306)
252 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0076 2.6E-07 74.9 7.8 49 171-219 458-513 (758)
253 2qgz_A Helicase loader, putati 96.0 0.0096 3.3E-07 64.9 7.5 59 170-228 123-187 (308)
254 1zu4_A FTSY; GTPase, signal re 95.9 0.023 7.9E-07 62.0 10.0 104 102-221 16-132 (320)
255 3hr8_A Protein RECA; alpha and 95.9 0.02 6.8E-07 63.2 9.2 50 180-229 46-96 (356)
256 1g5t_A COB(I)alamin adenosyltr 95.7 0.016 5.5E-07 57.7 7.0 131 195-329 29-179 (196)
257 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0066 2.3E-07 65.3 4.1 24 194-217 123-146 (331)
258 1pgv_A TMD-1, tropomodulin TMD 95.6 0.0068 2.3E-07 60.6 3.8 11 749-759 40-50 (197)
259 1pgv_A TMD-1, tropomodulin TMD 95.6 0.011 3.6E-07 59.2 5.0 40 772-811 39-83 (197)
260 3lw7_A Adenylate kinase relate 95.5 0.035 1.2E-06 54.6 8.8 20 195-214 2-21 (179)
261 2w0m_A SSO2452; RECA, SSPF, un 95.5 0.014 4.7E-07 60.7 6.1 34 195-228 24-57 (235)
262 1j8m_F SRP54, signal recogniti 95.5 0.048 1.6E-06 58.9 10.2 35 194-228 98-132 (297)
263 3bh0_A DNAB-like replicative h 95.4 0.046 1.6E-06 59.7 10.2 49 180-229 55-103 (315)
264 1qvr_A CLPB protein; coiled co 95.1 0.036 1.2E-06 69.6 9.0 49 172-220 559-614 (854)
265 4a74_A DNA repair and recombin 95.1 0.03 1E-06 58.0 7.0 26 193-218 24-49 (231)
266 3kl4_A SRP54, signal recogniti 95.0 0.17 6E-06 57.2 13.4 36 193-228 96-131 (433)
267 2r44_A Uncharacterized protein 95.0 0.011 3.6E-07 65.5 3.2 49 170-222 26-74 (331)
268 3c8u_A Fructokinase; YP_612366 95.0 0.024 8.4E-07 57.8 5.7 28 192-219 20-47 (208)
269 3dm5_A SRP54, signal recogniti 94.9 0.16 5.6E-06 57.4 12.9 29 193-221 99-127 (443)
270 2xxa_A Signal recognition part 94.9 0.11 3.9E-06 59.0 11.6 29 193-221 99-127 (433)
271 3e70_C DPA, signal recognition 94.9 0.079 2.7E-06 57.9 9.8 29 193-221 128-156 (328)
272 1rz3_A Hypothetical protein rb 94.8 0.04 1.4E-06 55.8 6.7 43 177-219 4-47 (201)
273 1qhx_A CPT, protein (chloramph 94.7 0.013 4.5E-07 58.0 2.9 25 195-219 4-28 (178)
274 1u0j_A DNA replication protein 94.7 0.066 2.3E-06 56.1 8.2 38 181-218 91-128 (267)
275 2b8t_A Thymidine kinase; deoxy 94.7 0.013 4.3E-07 60.2 2.7 112 194-315 12-127 (223)
276 3sr0_A Adenylate kinase; phosp 94.7 0.063 2.1E-06 54.4 7.8 23 196-218 2-24 (206)
277 3cf2_A TER ATPase, transitiona 94.7 0.022 7.5E-07 69.6 5.1 149 171-343 477-661 (806)
278 3hws_A ATP-dependent CLP prote 94.6 0.019 6.4E-07 64.4 4.3 47 173-219 17-76 (363)
279 1xp8_A RECA protein, recombina 94.6 0.06 2E-06 59.8 8.1 54 177-230 56-110 (366)
280 3kb2_A SPBC2 prophage-derived 94.5 0.018 6E-07 56.6 3.3 25 195-219 2-26 (173)
281 1rj9_A FTSY, signal recognitio 94.5 0.086 2.9E-06 57.0 8.7 35 193-228 101-135 (304)
282 1odf_A YGR205W, hypothetical 3 94.4 0.039 1.3E-06 59.3 5.7 30 191-220 28-57 (290)
283 2yhs_A FTSY, cell division pro 94.4 0.095 3.2E-06 59.9 9.1 35 193-228 292-326 (503)
284 2eyu_A Twitching motility prot 94.4 0.041 1.4E-06 58.2 5.8 111 194-316 25-135 (261)
285 3rfe_A Platelet glycoprotein I 94.3 0.063 2.2E-06 49.9 6.3 53 802-861 12-66 (130)
286 3jvv_A Twitching mobility prot 94.3 0.024 8.1E-07 62.9 3.9 110 195-317 124-234 (356)
287 3trf_A Shikimate kinase, SK; a 94.3 0.019 6.7E-07 57.2 3.0 25 195-219 6-30 (185)
288 3vaa_A Shikimate kinase, SK; s 94.3 0.023 7.9E-07 57.5 3.5 26 194-219 25-50 (199)
289 2q6t_A DNAB replication FORK h 94.2 0.18 6.1E-06 57.9 11.4 71 175-252 182-253 (444)
290 3rfe_A Platelet glycoprotein I 94.2 0.058 2E-06 50.2 5.9 50 854-905 12-66 (130)
291 1nks_A Adenylate kinase; therm 94.0 0.05 1.7E-06 54.5 5.4 26 195-220 2-27 (194)
292 1ex7_A Guanylate kinase; subst 94.0 0.017 5.7E-07 57.5 1.7 29 195-223 2-30 (186)
293 2ga8_A Hypothetical 39.9 kDa p 94.0 0.039 1.3E-06 60.3 4.7 48 175-222 3-52 (359)
294 1zuh_A Shikimate kinase; alpha 93.9 0.028 9.6E-07 55.0 3.1 27 193-219 6-32 (168)
295 1jr3_D DNA polymerase III, del 93.8 0.29 9.8E-06 54.1 11.7 153 194-373 18-183 (343)
296 1g8p_A Magnesium-chelatase 38 93.8 0.029 9.8E-07 62.5 3.5 52 166-219 19-70 (350)
297 3b9q_A Chloroplast SRP recepto 93.8 0.15 5.1E-06 55.1 9.0 35 193-228 99-133 (302)
298 3uie_A Adenylyl-sulfate kinase 93.8 0.058 2E-06 54.5 5.5 27 193-219 24-50 (200)
299 3io5_A Recombination and repai 93.8 0.062 2.1E-06 57.5 5.7 35 196-230 30-66 (333)
300 2px0_A Flagellar biosynthesis 93.7 0.085 2.9E-06 56.8 6.9 28 193-220 104-131 (296)
301 1ly1_A Polynucleotide kinase; 93.6 0.037 1.2E-06 54.8 3.6 22 195-216 3-24 (181)
302 2rhm_A Putative kinase; P-loop 93.6 0.043 1.5E-06 54.9 4.1 25 194-218 5-29 (193)
303 2og2_A Putative signal recogni 93.6 0.17 5.8E-06 55.9 9.1 35 193-228 156-190 (359)
304 1kag_A SKI, shikimate kinase I 93.5 0.028 9.5E-07 55.3 2.4 25 195-219 5-29 (173)
305 1zp6_A Hypothetical protein AT 93.5 0.038 1.3E-06 55.3 3.5 24 194-217 9-32 (191)
306 2pjz_A Hypothetical protein ST 93.5 0.21 7.3E-06 52.6 9.4 23 195-217 31-53 (263)
307 3nbx_X ATPase RAVA; AAA+ ATPas 93.5 0.044 1.5E-06 63.6 4.3 44 171-218 22-65 (500)
308 3iij_A Coilin-interacting nucl 93.5 0.027 9.1E-07 55.9 2.2 25 194-218 11-35 (180)
309 2yvu_A Probable adenylyl-sulfa 93.4 0.07 2.4E-06 53.1 5.3 28 193-220 12-39 (186)
310 1xjc_A MOBB protein homolog; s 93.4 0.058 2E-06 52.5 4.4 29 193-221 3-31 (169)
311 2ze6_A Isopentenyl transferase 93.4 0.041 1.4E-06 58.0 3.6 25 195-219 2-26 (253)
312 2v3c_C SRP54, signal recogniti 93.4 0.064 2.2E-06 61.1 5.3 29 193-221 98-126 (432)
313 3tlx_A Adenylate kinase 2; str 93.4 0.054 1.8E-06 56.7 4.4 26 193-218 28-53 (243)
314 1kht_A Adenylate kinase; phosp 93.4 0.046 1.6E-06 54.6 3.8 26 195-220 4-29 (192)
315 1via_A Shikimate kinase; struc 93.3 0.039 1.3E-06 54.4 3.1 24 196-219 6-29 (175)
316 1v5w_A DMC1, meiotic recombina 93.3 0.13 4.6E-06 56.7 7.7 48 182-229 110-163 (343)
317 2jaq_A Deoxyguanosine kinase; 93.3 0.039 1.3E-06 55.8 3.1 24 196-219 2-25 (205)
318 3t61_A Gluconokinase; PSI-biol 93.3 0.037 1.3E-06 56.0 2.9 24 195-218 19-42 (202)
319 1kgd_A CASK, peripheral plasma 93.2 0.04 1.4E-06 54.7 3.0 25 195-219 6-30 (180)
320 2zr9_A Protein RECA, recombina 93.2 0.13 4.5E-06 56.8 7.4 51 179-229 45-96 (349)
321 1knq_A Gluconate kinase; ALFA/ 93.1 0.055 1.9E-06 53.2 3.9 25 194-218 8-32 (175)
322 3fwy_A Light-independent proto 93.1 0.081 2.8E-06 57.5 5.5 37 192-228 46-82 (314)
323 2iyv_A Shikimate kinase, SK; t 93.1 0.035 1.2E-06 55.3 2.3 24 196-219 4-27 (184)
324 3a00_A Guanylate kinase, GMP k 92.9 0.038 1.3E-06 55.2 2.3 28 195-222 2-29 (186)
325 4eun_A Thermoresistant glucoki 92.9 0.057 2E-06 54.6 3.6 25 194-218 29-53 (200)
326 2ewv_A Twitching motility prot 92.9 0.15 5E-06 57.1 7.2 109 194-315 136-245 (372)
327 3ice_A Transcription terminati 92.9 0.17 5.9E-06 55.5 7.5 29 194-222 174-202 (422)
328 1sky_E F1-ATPase, F1-ATP synth 92.8 0.13 4.5E-06 58.3 6.8 30 196-225 153-182 (473)
329 2pt5_A Shikimate kinase, SK; a 92.8 0.057 2E-06 52.7 3.5 24 196-219 2-25 (168)
330 1u94_A RECA protein, recombina 92.8 0.14 4.9E-06 56.5 7.0 54 177-230 45-99 (356)
331 3cm0_A Adenylate kinase; ATP-b 92.8 0.059 2E-06 53.6 3.6 25 194-218 4-28 (186)
332 4a1f_A DNAB helicase, replicat 92.8 0.16 5.3E-06 55.6 7.1 69 175-250 28-96 (338)
333 1puj_A YLQF, conserved hypothe 92.8 0.68 2.3E-05 49.3 12.0 36 37-73 13-48 (282)
334 1tev_A UMP-CMP kinase; ploop, 92.8 0.065 2.2E-06 53.7 3.9 24 195-218 4-27 (196)
335 3tau_A Guanylate kinase, GMP k 92.8 0.039 1.3E-06 56.2 2.2 27 194-220 8-34 (208)
336 2plr_A DTMP kinase, probable t 92.7 0.092 3.1E-06 53.4 5.0 28 195-222 5-32 (213)
337 2c95_A Adenylate kinase 1; tra 92.7 0.056 1.9E-06 54.3 3.3 25 194-218 9-33 (196)
338 2bwj_A Adenylate kinase 5; pho 92.7 0.059 2E-06 54.3 3.5 25 195-219 13-37 (199)
339 1tue_A Replication protein E1; 92.7 0.069 2.4E-06 53.3 3.8 42 178-220 43-84 (212)
340 3bgw_A DNAB-like replicative h 92.7 0.45 1.5E-05 54.4 11.2 48 180-228 184-231 (444)
341 1nn5_A Similar to deoxythymidy 92.7 0.093 3.2E-06 53.5 5.0 29 194-222 9-37 (215)
342 1ukz_A Uridylate kinase; trans 92.6 0.071 2.4E-06 53.9 4.0 26 193-218 14-39 (203)
343 2bdt_A BH3686; alpha-beta prot 92.6 0.063 2.2E-06 53.6 3.6 22 195-216 3-24 (189)
344 1e6c_A Shikimate kinase; phosp 92.6 0.049 1.7E-06 53.4 2.7 25 195-219 3-27 (173)
345 2vli_A Antibiotic resistance p 92.6 0.043 1.5E-06 54.5 2.2 25 195-219 6-30 (183)
346 1y63_A LMAJ004144AAA protein; 92.6 0.064 2.2E-06 53.4 3.5 24 194-217 10-33 (184)
347 1qf9_A UMP/CMP kinase, protein 92.5 0.077 2.6E-06 53.0 4.0 26 194-219 6-31 (194)
348 2cdn_A Adenylate kinase; phosp 92.5 0.066 2.2E-06 54.1 3.5 26 194-219 20-45 (201)
349 1cke_A CK, MSSA, protein (cyti 92.5 0.068 2.3E-06 55.2 3.6 25 195-219 6-30 (227)
350 1uf9_A TT1252 protein; P-loop, 92.4 0.075 2.6E-06 53.6 3.9 26 192-217 6-31 (203)
351 1uj2_A Uridine-cytidine kinase 92.4 0.068 2.3E-06 56.3 3.6 28 192-219 20-47 (252)
352 3umf_A Adenylate kinase; rossm 92.4 0.082 2.8E-06 53.9 4.0 27 192-218 27-53 (217)
353 2qor_A Guanylate kinase; phosp 92.4 0.052 1.8E-06 55.1 2.6 26 194-219 12-37 (204)
354 2if2_A Dephospho-COA kinase; a 92.3 0.069 2.4E-06 54.1 3.5 21 196-216 3-23 (204)
355 3ney_A 55 kDa erythrocyte memb 92.3 0.051 1.7E-06 54.4 2.3 27 193-219 18-44 (197)
356 2wwf_A Thymidilate kinase, put 92.3 0.082 2.8E-06 53.8 4.0 28 194-221 10-37 (212)
357 1g41_A Heat shock protein HSLU 92.3 0.087 3E-06 59.7 4.4 51 172-222 16-78 (444)
358 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.083 2.8E-06 55.9 4.1 26 194-219 4-29 (260)
359 3asz_A Uridine kinase; cytidin 92.3 0.089 3E-06 53.6 4.2 27 193-219 5-31 (211)
360 3tr0_A Guanylate kinase, GMP k 92.3 0.069 2.4E-06 54.0 3.3 24 195-218 8-31 (205)
361 1tf7_A KAIC; homohexamer, hexa 92.2 0.18 6.2E-06 59.3 7.3 38 183-220 270-307 (525)
362 3p32_A Probable GTPase RV1496/ 92.2 0.19 6.4E-06 55.9 7.0 40 182-221 67-106 (355)
363 2r6a_A DNAB helicase, replicat 92.2 0.83 2.9E-05 52.5 12.8 35 194-228 203-238 (454)
364 1aky_A Adenylate kinase; ATP:A 92.2 0.061 2.1E-06 55.3 2.8 25 195-219 5-29 (220)
365 2pbr_A DTMP kinase, thymidylat 92.2 0.08 2.8E-06 53.0 3.6 25 196-220 2-26 (195)
366 1ye8_A Protein THEP1, hypothet 92.1 0.087 3E-06 52.1 3.7 24 196-219 2-25 (178)
367 3tqc_A Pantothenate kinase; bi 92.1 0.11 3.8E-06 56.4 4.8 46 174-219 70-117 (321)
368 2j41_A Guanylate kinase; GMP, 92.0 0.079 2.7E-06 53.7 3.3 24 195-218 7-30 (207)
369 2qt1_A Nicotinamide riboside k 91.9 0.097 3.3E-06 53.1 4.0 25 193-217 20-44 (207)
370 2ffh_A Protein (FFH); SRP54, s 91.9 0.46 1.6E-05 53.6 9.8 29 193-221 97-125 (425)
371 2bbw_A Adenylate kinase 4, AK4 91.9 0.086 2.9E-06 55.3 3.6 26 194-219 27-52 (246)
372 2grj_A Dephospho-COA kinase; T 91.9 0.095 3.2E-06 52.5 3.7 26 193-218 11-36 (192)
373 4gp7_A Metallophosphoesterase; 91.9 0.07 2.4E-06 52.4 2.7 21 194-214 9-29 (171)
374 2j37_W Signal recognition part 91.8 0.15 5.3E-06 58.9 5.8 30 192-221 99-128 (504)
375 1jjv_A Dephospho-COA kinase; P 91.8 0.086 3E-06 53.4 3.4 22 195-216 3-24 (206)
376 3fb4_A Adenylate kinase; psych 91.7 0.097 3.3E-06 53.5 3.6 23 196-218 2-24 (216)
377 3nwj_A ATSK2; P loop, shikimat 91.5 0.079 2.7E-06 55.5 2.7 25 195-219 49-73 (250)
378 4e22_A Cytidylate kinase; P-lo 91.5 0.084 2.9E-06 55.5 3.0 26 194-219 27-52 (252)
379 1gtv_A TMK, thymidylate kinase 91.5 0.078 2.7E-06 54.1 2.7 25 196-220 2-26 (214)
380 2z0h_A DTMP kinase, thymidylat 91.5 0.11 3.6E-06 52.2 3.6 25 196-220 2-26 (197)
381 1gvn_B Zeta; postsegregational 91.5 0.11 3.7E-06 55.8 3.8 26 193-218 32-57 (287)
382 1lvg_A Guanylate kinase, GMP k 91.4 0.083 2.8E-06 53.3 2.7 25 195-219 5-29 (198)
383 1zd8_A GTP:AMP phosphotransfer 91.4 0.084 2.9E-06 54.5 2.8 25 194-218 7-31 (227)
384 2dr3_A UPF0273 protein PH0284; 91.3 0.16 5.4E-06 53.0 4.9 36 194-229 23-58 (247)
385 2pez_A Bifunctional 3'-phospho 91.3 0.13 4.4E-06 50.8 3.9 27 194-220 5-31 (179)
386 1m7g_A Adenylylsulfate kinase; 91.2 0.13 4.4E-06 52.4 4.0 26 194-219 25-50 (211)
387 3dl0_A Adenylate kinase; phosp 91.2 0.1 3.5E-06 53.4 3.2 23 196-218 2-24 (216)
388 1zak_A Adenylate kinase; ATP:A 91.2 0.097 3.3E-06 53.8 3.0 25 195-219 6-30 (222)
389 3d3q_A TRNA delta(2)-isopenten 91.2 0.11 3.8E-06 56.6 3.6 25 195-219 8-32 (340)
390 3ake_A Cytidylate kinase; CMP 91.1 0.12 3.9E-06 52.5 3.5 24 196-219 4-27 (208)
391 2pt7_A CAG-ALFA; ATPase, prote 91.1 0.15 5.2E-06 55.9 4.6 101 195-314 172-275 (330)
392 3aez_A Pantothenate kinase; tr 91.1 0.14 4.7E-06 55.7 4.2 29 192-220 88-116 (312)
393 3k1j_A LON protease, ATP-depen 91.0 0.1 3.6E-06 62.6 3.5 50 168-221 38-87 (604)
394 3r20_A Cytidylate kinase; stru 90.9 0.12 4E-06 53.4 3.3 25 195-219 10-34 (233)
395 3upu_A ATP-dependent DNA helic 90.9 0.87 3E-05 52.4 11.1 28 196-223 47-74 (459)
396 2wsm_A Hydrogenase expression/ 90.9 0.19 6.6E-06 51.4 5.0 42 178-221 16-57 (221)
397 2jeo_A Uridine-cytidine kinase 90.9 0.14 4.8E-06 53.5 4.0 26 193-218 24-49 (245)
398 2hf9_A Probable hydrogenase ni 90.8 0.31 1E-05 50.0 6.5 29 193-221 37-65 (226)
399 2f6r_A COA synthase, bifunctio 90.8 0.14 4.7E-06 54.9 3.8 24 193-216 74-97 (281)
400 1znw_A Guanylate kinase, GMP k 90.8 0.12 4E-06 52.6 3.1 24 195-218 21-44 (207)
401 1n0w_A DNA repair protein RAD5 90.7 0.17 6E-06 52.5 4.6 48 182-229 12-65 (243)
402 3be4_A Adenylate kinase; malar 90.7 0.14 4.9E-06 52.3 3.8 24 195-218 6-29 (217)
403 3crm_A TRNA delta(2)-isopenten 90.6 0.11 3.8E-06 56.2 2.9 25 195-219 6-30 (323)
404 1e4v_A Adenylate kinase; trans 90.6 0.15 5.2E-06 52.0 3.8 23 196-218 2-24 (214)
405 1htw_A HI0065; nucleotide-bind 90.5 0.14 5E-06 49.3 3.4 26 193-218 32-57 (158)
406 2p5t_B PEZT; postsegregational 90.5 0.11 3.9E-06 54.6 2.9 27 193-219 31-57 (253)
407 1np6_A Molybdopterin-guanine d 90.5 0.23 7.9E-06 48.7 4.8 27 194-220 6-32 (174)
408 3cmu_A Protein RECA, recombina 90.4 0.39 1.3E-05 64.1 8.3 37 193-229 1080-1116(2050)
409 1ak2_A Adenylate kinase isoenz 90.4 0.14 4.6E-06 53.2 3.3 25 195-219 17-41 (233)
410 1cr0_A DNA primase/helicase; R 90.4 0.36 1.2E-05 52.0 6.8 34 195-228 36-70 (296)
411 2xb4_A Adenylate kinase; ATP-b 90.4 0.15 5.2E-06 52.4 3.6 23 196-218 2-24 (223)
412 2i3b_A HCR-ntpase, human cance 90.4 0.14 4.7E-06 51.1 3.1 24 196-219 3-26 (189)
413 3a8t_A Adenylate isopentenyltr 90.3 0.089 3E-06 57.1 1.8 25 194-218 40-64 (339)
414 2ehv_A Hypothetical protein PH 90.3 0.2 6.7E-06 52.4 4.5 35 194-228 30-65 (251)
415 2f1r_A Molybdopterin-guanine d 90.3 0.11 3.7E-06 50.9 2.2 26 195-220 3-28 (171)
416 1z6g_A Guanylate kinase; struc 90.3 0.11 3.9E-06 53.2 2.6 25 194-218 23-47 (218)
417 2v54_A DTMP kinase, thymidylat 90.3 0.14 4.9E-06 51.6 3.3 24 195-218 5-28 (204)
418 1vht_A Dephospho-COA kinase; s 90.1 0.17 5.7E-06 51.9 3.6 23 194-216 4-26 (218)
419 3exa_A TRNA delta(2)-isopenten 90.0 0.14 4.9E-06 54.8 3.1 24 195-218 4-27 (322)
420 2ck3_D ATP synthase subunit be 90.0 0.54 1.9E-05 53.2 7.9 52 195-249 154-206 (482)
421 2r8r_A Sensor protein; KDPD, P 90.0 0.28 9.5E-06 49.9 5.0 27 195-221 7-33 (228)
422 3end_A Light-independent proto 89.9 0.27 9.1E-06 53.4 5.3 37 192-228 39-75 (307)
423 1a7j_A Phosphoribulokinase; tr 89.9 0.11 3.6E-06 56.0 2.0 27 193-219 4-30 (290)
424 1s96_A Guanylate kinase, GMP k 89.9 0.15 5.3E-06 52.1 3.1 26 194-219 16-41 (219)
425 1cp2_A CP2, nitrogenase iron p 89.9 0.3 1E-05 51.7 5.6 34 195-228 2-35 (269)
426 1u0l_A Probable GTPase ENGC; p 89.8 0.86 2.9E-05 49.1 9.1 32 180-216 160-191 (301)
427 1yrb_A ATP(GTP)binding protein 89.7 0.3 1E-05 51.5 5.3 27 193-219 13-39 (262)
428 3foz_A TRNA delta(2)-isopenten 89.6 0.18 6.1E-06 53.9 3.4 25 194-218 10-34 (316)
429 1fx0_B ATP synthase beta chain 89.6 0.46 1.6E-05 54.1 6.9 52 195-249 166-218 (498)
430 3e1s_A Exodeoxyribonuclease V, 89.5 0.74 2.5E-05 54.5 9.0 28 195-222 205-232 (574)
431 3cnl_A YLQF, putative uncharac 89.5 0.59 2E-05 49.2 7.4 29 37-65 11-39 (262)
432 2afh_E Nitrogenase iron protei 89.4 0.33 1.1E-05 52.1 5.5 28 194-221 2-29 (289)
433 1sq5_A Pantothenate kinase; P- 89.4 0.23 7.7E-06 54.0 4.1 28 192-219 78-105 (308)
434 1ls1_A Signal recognition part 89.2 0.33 1.1E-05 52.2 5.3 29 193-221 97-125 (295)
435 1svm_A Large T antigen; AAA+ f 89.1 0.25 8.5E-06 55.0 4.3 27 192-218 167-193 (377)
436 3lnc_A Guanylate kinase, GMP k 89.0 0.14 4.6E-06 53.1 2.0 24 195-218 28-52 (231)
437 3b85_A Phosphate starvation-in 88.8 0.18 6.2E-06 51.1 2.7 23 195-217 23-45 (208)
438 2yv5_A YJEQ protein; hydrolase 88.8 1 3.6E-05 48.4 8.9 31 180-215 156-186 (302)
439 2p67_A LAO/AO transport system 88.8 0.55 1.9E-05 51.7 6.8 30 192-221 54-83 (341)
440 3eph_A TRNA isopentenyltransfe 88.7 0.26 8.9E-06 54.8 4.0 25 195-219 3-27 (409)
441 1ltq_A Polynucleotide kinase; 88.6 0.23 7.9E-06 53.7 3.6 23 195-217 3-25 (301)
442 2qmh_A HPR kinase/phosphorylas 88.6 0.19 6.3E-06 50.0 2.5 24 195-218 35-58 (205)
443 1q3t_A Cytidylate kinase; nucl 88.6 0.21 7.1E-06 51.9 3.0 26 193-218 15-40 (236)
444 1nlf_A Regulatory protein REPA 88.5 0.4 1.4E-05 51.1 5.4 26 195-220 31-56 (279)
445 2pcj_A ABC transporter, lipopr 88.4 0.2 6.9E-06 51.5 2.8 22 195-216 31-52 (224)
446 2onk_A Molybdate/tungstate ABC 88.4 0.23 7.7E-06 51.7 3.1 22 195-216 25-46 (240)
447 2orw_A Thymidine kinase; TMTK, 88.4 0.41 1.4E-05 47.4 4.9 26 195-220 4-29 (184)
448 1oix_A RAS-related protein RAB 88.2 0.31 1E-05 48.6 3.9 25 193-217 28-52 (191)
449 4eaq_A DTMP kinase, thymidylat 88.2 0.3 1E-05 50.4 3.9 28 193-220 25-52 (229)
450 3tif_A Uncharacterized ABC tra 88.1 0.21 7E-06 51.8 2.6 22 195-216 32-53 (235)
451 1mky_A Probable GTP-binding pr 87.7 3.6 0.00012 46.8 13.1 25 193-217 179-203 (439)
452 1ypw_A Transitional endoplasmi 87.6 0.25 8.4E-06 61.3 3.3 54 169-222 475-539 (806)
453 2dyk_A GTP-binding protein; GT 87.6 0.32 1.1E-05 46.5 3.5 22 195-216 2-23 (161)
454 1g8f_A Sulfate adenylyltransfe 87.5 0.39 1.3E-05 55.5 4.7 28 193-220 394-421 (511)
455 2cbz_A Multidrug resistance-as 87.5 0.24 8.1E-06 51.4 2.6 23 195-217 32-54 (237)
456 3cmw_A Protein RECA, recombina 87.5 0.53 1.8E-05 62.0 6.3 48 182-229 1418-1466(1706)
457 2z43_A DNA repair and recombin 87.5 0.41 1.4E-05 52.3 4.7 48 182-229 95-148 (324)
458 3gfo_A Cobalt import ATP-bindi 87.4 0.24 8.2E-06 52.6 2.6 22 195-216 35-56 (275)
459 2d2e_A SUFC protein; ABC-ATPas 87.4 0.28 9.6E-06 51.4 3.1 22 195-216 30-51 (250)
460 1pzn_A RAD51, DNA repair and r 87.4 0.35 1.2E-05 53.4 4.1 36 183-218 120-155 (349)
461 2qm8_A GTPase/ATPase; G protei 87.3 0.68 2.3E-05 50.8 6.3 29 192-220 53-81 (337)
462 3fdi_A Uncharacterized protein 87.2 0.32 1.1E-05 49.0 3.3 25 195-219 7-31 (201)
463 1b0u_A Histidine permease; ABC 87.2 0.25 8.5E-06 52.2 2.6 22 195-216 33-54 (262)
464 2wji_A Ferrous iron transport 87.2 0.37 1.3E-05 46.6 3.7 22 195-216 4-25 (165)
465 2ocp_A DGK, deoxyguanosine kin 87.2 0.37 1.3E-05 50.1 3.9 26 194-219 2-27 (241)
466 2zu0_C Probable ATP-dependent 87.1 0.29 1E-05 51.7 3.1 23 195-217 47-69 (267)
467 4g1u_C Hemin import ATP-bindin 87.1 0.26 8.8E-06 52.1 2.6 33 195-228 38-70 (266)
468 3gmt_A Adenylate kinase; ssgci 87.0 0.34 1.2E-05 49.6 3.4 23 196-218 10-32 (230)
469 1ji0_A ABC transporter; ATP bi 87.0 0.26 9E-06 51.2 2.6 22 195-216 33-54 (240)
470 1sgw_A Putative ABC transporte 86.9 0.23 7.8E-06 50.6 2.0 22 195-216 36-57 (214)
471 2olj_A Amino acid ABC transpor 86.9 0.27 9.1E-06 51.9 2.6 22 195-216 51-72 (263)
472 2f9l_A RAB11B, member RAS onco 86.9 0.38 1.3E-05 48.2 3.7 24 194-217 5-28 (199)
473 1g6h_A High-affinity branched- 86.8 0.27 9.2E-06 51.7 2.6 22 195-216 34-55 (257)
474 4dzz_A Plasmid partitioning pr 86.8 0.51 1.7E-05 47.4 4.7 34 195-228 2-36 (206)
475 2axn_A 6-phosphofructo-2-kinas 86.7 0.55 1.9E-05 54.8 5.4 30 193-222 34-63 (520)
476 1mv5_A LMRA, multidrug resista 86.7 0.3 1E-05 50.9 2.9 23 194-216 28-50 (243)
477 2pze_A Cystic fibrosis transme 86.7 0.28 9.6E-06 50.6 2.6 23 195-217 35-57 (229)
478 3cmw_A Protein RECA, recombina 86.7 1 3.6E-05 59.3 8.4 56 173-228 710-766 (1706)
479 2v9p_A Replication protein E1; 86.7 0.34 1.2E-05 52.1 3.3 26 193-218 125-150 (305)
480 3vr4_D V-type sodium ATPase su 86.7 0.14 4.7E-06 57.7 0.2 26 195-220 152-177 (465)
481 2ff7_A Alpha-hemolysin translo 86.7 0.28 9.6E-06 51.2 2.6 22 195-216 36-57 (247)
482 2zts_A Putative uncharacterize 86.6 0.43 1.5E-05 49.7 4.1 35 194-228 30-65 (251)
483 1vpl_A ABC transporter, ATP-bi 86.6 0.29 9.8E-06 51.4 2.6 22 195-216 42-63 (256)
484 3zvl_A Bifunctional polynucleo 86.3 0.23 8E-06 56.4 1.9 27 192-218 256-282 (416)
485 3cr8_A Sulfate adenylyltranfer 86.3 0.52 1.8E-05 55.3 4.9 28 194-221 369-396 (552)
486 2ghi_A Transport protein; mult 86.3 0.3 1E-05 51.5 2.6 23 195-217 47-69 (260)
487 2hjg_A GTP-binding protein ENG 86.2 1.9 6.4E-05 49.2 9.5 24 193-216 174-197 (436)
488 2qi9_C Vitamin B12 import ATP- 86.2 0.31 1.1E-05 50.9 2.6 32 195-228 27-58 (249)
489 2ixe_A Antigen peptide transpo 86.1 0.31 1.1E-05 51.7 2.6 22 195-216 46-67 (271)
490 2h92_A Cytidylate kinase; ross 86.0 0.3 1E-05 49.9 2.4 24 195-218 4-27 (219)
491 3ea0_A ATPase, para family; al 86.0 0.74 2.5E-05 47.8 5.5 29 193-221 3-32 (245)
492 4hlc_A DTMP kinase, thymidylat 86.0 0.66 2.3E-05 46.8 4.9 29 195-223 3-31 (205)
493 3cmu_A Protein RECA, recombina 86.0 1.5 5.2E-05 58.5 9.5 57 173-229 361-418 (2050)
494 4edh_A DTMP kinase, thymidylat 85.9 0.74 2.5E-05 46.7 5.3 27 195-221 7-33 (213)
495 2yz2_A Putative ABC transporte 85.9 0.32 1.1E-05 51.4 2.6 22 195-216 34-55 (266)
496 2ihy_A ABC transporter, ATP-bi 85.9 0.32 1.1E-05 51.8 2.6 24 195-218 48-71 (279)
497 2nq2_C Hypothetical ABC transp 85.9 0.32 1.1E-05 50.9 2.6 22 195-216 32-53 (253)
498 2zej_A Dardarin, leucine-rich 85.9 0.34 1.2E-05 47.8 2.7 21 196-216 4-24 (184)
499 2ce2_X GTPase HRAS; signaling 85.9 0.41 1.4E-05 45.8 3.2 21 196-216 5-25 (166)
500 3kjh_A CO dehydrogenase/acetyl 85.8 0.56 1.9E-05 48.9 4.5 32 197-228 3-34 (254)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.5e-46 Score=366.05 Aligned_cols=160 Identities=44% Similarity=0.716 Sum_probs=136.7
Q ss_pred CccccccCchhHHHHHHHHhCCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccC
Q 044535 1 FRGEDTRSNFTSHLYAALCRAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTT 79 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~ 79 (1085)
|||+|||++|++|||++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+|||+|+||++||++|++|++
T Consensus 15 frg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~-- 92 (176)
T 3jrn_A 15 FRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEK-- 92 (176)
T ss_dssp ECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHH--
T ss_pred CcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhc--
Confidence 89999999999999999999999999998 999999999999999999999999999999999999999999999998
Q ss_pred CCCcEEEEEEeeecCccccccccchhHHHHHHHHhcCCChhHHHHHHHHHHHHhhcccccccCCCCcHHHHHHHHHHHHh
Q 044535 80 DMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKPKVLKWRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVL 159 (1085)
Q Consensus 80 ~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~al~~~~~~~g~~~~~~~~~e~~~i~~i~~~i~ 159 (1085)
..+++|+||||+|+|++||+|+|+|++||.+|+++ .+.+++++||+||+++|+++||+ . ..+|+++|++||++|.
T Consensus 93 ~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~--~-~~~e~~~i~~Iv~~v~ 167 (176)
T 3jrn_A 93 KGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDC--S-GDDDSKLVDKIANEIS 167 (176)
T ss_dssp TTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEE--C-CSCHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhccccee--c-CCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999987 57899999999999999999994 4 3579999999999999
Q ss_pred hccccccc
Q 044535 160 KKLNHTSS 167 (1085)
Q Consensus 160 ~~l~~~~~ 167 (1085)
+++++++|
T Consensus 168 ~~l~~~~~ 175 (176)
T 3jrn_A 168 NKKTIYAT 175 (176)
T ss_dssp TTCC----
T ss_pred HHhcCCCC
Confidence 99988765
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1e-44 Score=359.28 Aligned_cols=159 Identities=41% Similarity=0.762 Sum_probs=149.1
Q ss_pred CccccccCchhHHHHHHHHhCCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccC
Q 044535 1 FRGEDTRSNFTSHLYAALCRAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTT 79 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~ 79 (1085)
|||+|||++|++|||++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||+|||+|+||++||++|++|++.
T Consensus 42 frg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~- 120 (204)
T 3ozi_A 42 FRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEE- 120 (204)
T ss_dssp ECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHH-
T ss_pred ccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHh-
Confidence 89999999999999999999999999998 9999999999999999999999999999999999999999999999861
Q ss_pred CCCcEEEEEEeeecCccccccccchhHHHHHHHHhcCCChhHHHHHHHHHHHHhhcccccccCCCC-cHHHHHHHHHHHH
Q 044535 80 DMGQIVLPVFYHVNPSDVRKQTGSFGEALAKHEKYSSKTKPKVLKWRAALTQVANLSGWHLDKQLG-SEAELVEKIVKDV 158 (1085)
Q Consensus 80 ~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~al~~~~~~~g~~~~~~~~-~e~~~i~~i~~~i 158 (1085)
..+++|+||||+|+|++||+|+|.|++||++|++++ +.+++++||+||++||+++|| +..++ .|+++|++||++|
T Consensus 121 ~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~--~~~~v~~Wr~AL~~va~lsG~--~~~~~~~e~~~i~~Iv~di 196 (204)
T 3ozi_A 121 DPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGW--HIGKNDKQGAIADKVSADI 196 (204)
T ss_dssp CTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS--CHHHHHHHHHHHHHHHTSCBE--EECTTSCHHHHHHHHHHHH
T ss_pred cCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh--CHHHHHHHHHHHHHHhccCce--ecCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999876 458999999999999999999 66555 6889999999999
Q ss_pred hhcccc
Q 044535 159 LKKLNH 164 (1085)
Q Consensus 159 ~~~l~~ 164 (1085)
+++++.
T Consensus 197 ~~kl~~ 202 (204)
T 3ozi_A 197 WSHISK 202 (204)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998763
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-40 Score=399.54 Aligned_cols=300 Identities=16% Similarity=0.173 Sum_probs=238.3
Q ss_pred cccchhHHHHHHhhccC-CCceEEEEEEecCCCcHHHHHHHHHH----HHhccCcceEEEeehhhhhhhhcHHHHHHHHH
Q 044535 174 IGIESRVEKVESLLCIG-LVDVHIVGIWGMGGIGKTTIARAIFD----RIANQFEGCCFLENVREESAKRGVHRLQEELF 248 (1085)
Q Consensus 174 vGr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~----~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll 248 (1085)
|||+.++++|.++|..+ ..++++|+|+|||||||||||+++|+ +++.+|+.++|+. ++.... .++..++.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 59999999999999654 34689999999999999999999996 7889999999994 322211 46788889999
Q ss_pred HHHhcCCC-CCCCCCcc-----chHHHHHhhcCC-ceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc-C
Q 044535 249 SRLLEDGD-LSLGASGL-----GHTFMNTRLRRK-TVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT-G 320 (1085)
Q Consensus 249 ~~~~~~~~-~~~~~~~~-----~~~~l~~~l~~k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~ 320 (1085)
.++..... ....+.+. ....+++.++++ |+||||||||+.+++ .+.. .+||+||||||++.++.. +
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 88876532 12222222 367888999996 999999999998876 3322 279999999999999886 3
Q ss_pred -CCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHHHHHH-hhhcCCC
Q 044535 321 -VDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWESALN-KLRKNPN 398 (1085)
Q Consensus 321 -~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~-~l~~~~~ 398 (1085)
...+|+|++|+.+||++||.++||+... .+.+.+++++|+++|+|+||||+++|+.|+.+.. +|...+. .+...+.
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 4478999999999999999999986543 3677889999999999999999999999987743 3333333 2333245
Q ss_pred chHHHHHHhhcCCCCHhHHHHHh-----------hhhcccCCCCHHHHHHHHhhC--CCCcc-----------hhhHHHh
Q 044535 399 MEIQNVLRITYDTLDDEEKAIFL-----------DIACFFKGDNRDHVTTILDGC--GFSTE-----------IGISVLI 454 (1085)
Q Consensus 399 ~~i~~~l~~sy~~L~~~~k~~fl-----------~~a~f~~~~~~~~l~~~~~~~--g~~~~-----------~~i~~L~ 454 (1085)
..+..++.+||+.||++.|.||+ |||+||+++.++ +.+|.++ |++.. .++..|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 56888999999999999999999 999999999888 6789888 66532 2699999
Q ss_pred hccceEEc----CCceeechHHHHHhceeeecccC
Q 044535 455 DKCLITVT----DDRLLMHDLLQEMGWGIVRQESI 485 (1085)
Q Consensus 455 ~~~Li~~~----~~~~~mHdli~~~~~~i~~~e~~ 485 (1085)
++||++.. ..+|.|||++|++|++++..++.
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 99999976 24699999999999999887653
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-34 Score=362.28 Aligned_cols=429 Identities=21% Similarity=0.233 Sum_probs=292.5
Q ss_pred ccCCCcceeeecccc---ccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCC-CCCC
Q 044535 518 LDLSKTSELHLRSDA---FVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNF-NPEN 593 (1085)
Q Consensus 518 ldl~~~~~~~~~~~~---f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~l~~ 593 (1085)
+|++.+......+.. +.++++|++|++++|.+.. .... ....+|++|++++|.+...+..+ ++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 224 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG----------DVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSA 224 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES----------CCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc----------cCCc-ccCCcCCEEECcCCcCCCCCcccccCCC
Confidence 455555444444444 6677888888887765421 1111 23358999999999987744335 8899
Q ss_pred ceEEecCCCCch-hhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCC----CCccEEecCC
Q 044535 594 LVELDMHHSNLE-HLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTS----WSITELDLGE 668 (1085)
Q Consensus 594 L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~----~~L~~L~Ls~ 668 (1085)
|++|++++|.+. .+|..+..+++|++|++++|.+...+|.. .+++|++|++++|.....+|..+ .+|++|++++
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 999999999998 67888999999999999999887766665 78888888888887665566543 5677777777
Q ss_pred Cccc-cccccccCCCcccEEEccCCCCCCccCCc-ccCCCCccEEEecccCCCccCCCC---------------------
Q 044535 669 TAIE-EVPPAIESLGKLVVLRLDNCRRLKNLPSS-ICNLTSLTELALHGCSNITKFPDI--------------------- 725 (1085)
Q Consensus 669 ~~i~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~p~~--------------------- 725 (1085)
|.+. .+|..++.+++|++|++++|...+.+|.. +.++++|++|++++|.....+|..
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 7776 55666677777777777766555455544 555666666666665443333322
Q ss_pred ---------CCCccccCccccccc-ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhc
Q 044535 726 ---------SGDMKYLSLSETAIE-ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILE 795 (1085)
Q Consensus 726 ---------~~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~ 795 (1085)
..+|+.|++++|.+. .+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+.
T Consensus 384 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 463 (768)
T 3rgz_A 384 ILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463 (768)
T ss_dssp CCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 224666666666665 5677777888888888888877777777777888888888888777777777777
Q ss_pred CCCCccEEEccCCCCc-ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCC
Q 044535 796 SMERLETLYLAGTPIK-ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLS 873 (1085)
Q Consensus 796 ~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 873 (1085)
.+++|++|++++|.++ .+|.++..+++|+.|+|++|. +....+..+..+++|+.|+|++|+++ .+|..+..++
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-----LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-----CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCT
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-----cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCC
Confidence 7788888888888777 567777777888888888777 44333345677777777777777777 5677777777
Q ss_pred CCCEEECCCCCCCc-CC---------------------------------------------------------------
Q 044535 874 SLEILGLSGNIFES-LN--------------------------------------------------------------- 889 (1085)
Q Consensus 874 ~L~~L~L~~n~l~~-l~--------------------------------------------------------------- 889 (1085)
+|+.|++++|.+++ +|
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 77777777776541 11
Q ss_pred ---------CCCCCCCCEeeccccccccccCC-CCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeE
Q 044535 890 ---------LKPFSCLTHLNVSYCKRLQSLQE-FPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 890 ---------~~~l~~L~~L~l~~c~~L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
+..+++|+.|++++|.....+|. +..+..|+.|++++|.--+.+|.... ....++.++++++.+.
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~-----~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-----DLRGLNILDLSSNKLD 693 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-----GCTTCCEEECCSSCCE
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh-----CCCCCCEEECCCCccc
Confidence 22245667777777665556663 55566677777777766666665432 2345666666666555
Q ss_pred EEecCCCCcccccC
Q 044535 960 ICFSGNEIPNWFSD 973 (1085)
Q Consensus 960 ~~~~g~~iP~wf~~ 973 (1085)
+.+|..|..
T Consensus 694 -----g~ip~~l~~ 702 (768)
T 3rgz_A 694 -----GRIPQAMSA 702 (768)
T ss_dssp -----ECCCGGGGG
T ss_pred -----CcCChHHhC
Confidence 345555543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.8e-34 Score=360.25 Aligned_cols=405 Identities=20% Similarity=0.214 Sum_probs=291.8
Q ss_pred ccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCC-CCCCCC-C-CCCc
Q 044535 518 LDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLK-SLPSNF-N-PENL 594 (1085)
Q Consensus 518 ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~-l~~L 594 (1085)
++++.+......+..|.++++|++|++++|.+.. ..+. . ..++|++|++++|.+. .+|..+ . +++|
T Consensus 228 L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--------~~~~-~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L 296 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--------PIPP-L--PLKSLQYLSLAENKFTGEIPDFLSGACDTL 296 (768)
T ss_dssp EECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE--------SCCC-C--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred EECcCCcCCCcccHHHhcCCCCCEEECCCCcccC--------ccCc-c--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence 3444444443445667777777777777765421 1111 1 2347888888888776 677665 3 4788
Q ss_pred eEEecCCCCch-hhhHhhhhccccceecccCCCCCCCCCC--CCCCCcccEEeccCcccccccCCCCC----CccEEecC
Q 044535 595 VELDMHHSNLE-HLWEEMQHALNLRRIDLSYSLHLNETPD--LSSARNLEIMVLDGCYSLIKFPKTSW----SITELDLG 667 (1085)
Q Consensus 595 ~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~~~~~~~~~~--l~~l~~L~~L~L~~~~~l~~~~~~~~----~L~~L~Ls 667 (1085)
++|+|++|.+. .+|..+..+++|++|++++|.+...+|. +..+++|++|++++|.....+|..+. +|+.|+++
T Consensus 297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 88888888877 6677788888888888888877656662 77888888888888876656666542 78888888
Q ss_pred CCccc-cccccccC--CCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCC---CCccccCccccccc-
Q 044535 668 ETAIE-EVPPAIES--LGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS---GDMKYLSLSETAIE- 740 (1085)
Q Consensus 668 ~~~i~-~lp~~i~~--l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~---~~L~~L~L~~~~i~- 740 (1085)
+|.+. .+|..+.. +++|++|++++|...+.+|..++++++|++|++++|.....+|..+ .+|+.|++++|.+.
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 456 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence 88876 45666655 7788888888887777778778888888888888887666666554 36677788888887
Q ss_pred ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc-ccCccccC
Q 044535 741 ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK-ELPSSIDH 819 (1085)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~l~~ 819 (1085)
.+|..+..+++|+.|++++|.+.+.+|..+.++++|+.|++++|.....+|..++.+++|++|+|++|.++ .+|..+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 67777888888888888888888888888888888888888888877788888888888888888888887 67788888
Q ss_pred CCCCCEEEccCCCchhhhccCCchh-------------------------------------------------------
Q 044535 820 LPQLSLLSLENCKNILVFLTNLPLA------------------------------------------------------- 844 (1085)
Q Consensus 820 l~~L~~L~L~~~~~l~~~l~~l~~~------------------------------------------------------- 844 (1085)
+++|+.|+|++|.- .+.+|..
T Consensus 537 l~~L~~L~Ls~N~l----~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 537 CRSLIWLDLNTNLF----NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp CTTCCEEECCSSEE----ESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred CCCCCEEECCCCcc----CCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 88888888888861 1122221
Q ss_pred --------------hhcCCCCccEEecCCCCCC-CCCcccCCCCCCCEEECCCCCCCc-CC--CCCCCCCCEeecccccc
Q 044535 845 --------------LLSGLCSLTELHLNDCNLL-ELPSALTCLSSLEILGLSGNIFES-LN--LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 845 --------------~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~-l~--~~~l~~L~~L~l~~c~~ 906 (1085)
.+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++ +| +..+++|+.|+|++|+.
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 1334566777777777777 567777777777777777777763 44 66777777777777776
Q ss_pred ccccCC-CCCCCCCCeEEEeCCCCCCcccCCC
Q 044535 907 LQSLQE-FPSPLRLVNLQAHECIYLETVPASA 937 (1085)
Q Consensus 907 L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~~~ 937 (1085)
...+|. +..+..|+.|++++|.--+.+|...
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence 666664 5556667777777777666666654
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-34 Score=383.22 Aligned_cols=307 Identities=21% Similarity=0.274 Sum_probs=241.4
Q ss_pred cccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH---HhccCcceEEEeehhhhhhhhcHH
Q 044535 165 TSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR---IANQFEGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 165 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~F~~~~~~~~~~~~s~~~~~~ 241 (1085)
..|.....||||+.++++|.++|....+++++|+|+||||+||||||+++|++ ...+|...+||..++... .....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 196 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD-KSGLL 196 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC-HHHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC-chHHH
Confidence 35566788999999999999999766677899999999999999999999975 456677666554543321 22334
Q ss_pred HHHHHHHHHHhcCCCCC---CCCCccchHHHHHhhcCC--ceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 044535 242 RLQEELFSRLLEDGDLS---LGASGLGHTFMNTRLRRK--TVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQV 316 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~---~~~~~~~~~~l~~~l~~k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 316 (1085)
.....++..+....... ....+.....++..+.++ |+||||||||+..+|+.+ ++||+||||||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 44555655555433111 122233445566666655 999999999999887654 579999999999999
Q ss_pred hhc--CCCeEEEeec-CCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHHHHHHhh
Q 044535 317 LKT--GVDEMYEVEE-LNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWESALNKL 393 (1085)
Q Consensus 317 ~~~--~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~l 393 (1085)
+.. .....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++.+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 853 5667899996 99999999999888432 344556789999999999999999999998765 4788888887
Q ss_pred hcCCC-----------chHHHHHHhhcCCCCHhHHHHHhhhhcccCCC--CHHHHHHHHhhCCCCcchhhHHHhhccceE
Q 044535 394 RKNPN-----------MEIQNVLRITYDTLDDEEKAIFLDIACFFKGD--NRDHVTTILDGCGFSTEIGISVLIDKCLIT 460 (1085)
Q Consensus 394 ~~~~~-----------~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~i~~L~~~~Li~ 460 (1085)
..... ..+..+|.+||+.|++++|.||++||+||+++ +.+.+..+|.+++..++..+..|++++|++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 65431 34889999999999999999999999999987 456788999888777888999999999999
Q ss_pred Ec-CC---ceeechHHHHHhceeeecc
Q 044535 461 VT-DD---RLLMHDLLQEMGWGIVRQE 483 (1085)
Q Consensus 461 ~~-~~---~~~mHdli~~~~~~i~~~e 483 (1085)
.. ++ +|.||+++|+++++...++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 87 44 3999999999999876554
No 7
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.2e-34 Score=349.74 Aligned_cols=278 Identities=16% Similarity=0.139 Sum_probs=210.9
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHH--HHhccCcc-eEEEeehhhhhhhhcHHHHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFD--RIANQFEG-CCFLENVREESAKRGVHRLQEEL 247 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~--~~~~~F~~-~~~~~~~~~~s~~~~~~~l~~~l 247 (1085)
+..|||+.++++|.++|... ++.++|+|+||||+||||||+++|+ +++.+|+. ++|+ +++. ......+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WV-sVs~---~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL-NLKN---CNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEE-ECCC---SSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEE-EeCC---CCCHHHHHHHH
Confidence 44699999999999999753 3478999999999999999999997 57899997 5555 4432 33344444444
Q ss_pred HHHHhcCC---CCCC-------CCCccchHHHHHhh---cCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCCh
Q 044535 248 FSRLLEDG---DLSL-------GASGLGHTFMNTRL---RRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDK 314 (1085)
Q Consensus 248 l~~~~~~~---~~~~-------~~~~~~~~~l~~~l---~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~ 314 (1085)
...+.... .... .+.+.....+++.+ .++|+||||||||+.++|+.+. +||+||||||++
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 43221110 0000 01122344566655 6799999999999999998763 699999999999
Q ss_pred hhhhc-CCCeEEEee------cCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCC--CHHH
Q 044535 315 QVLKT-GVDEMYEVE------ELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGR--SKRD 385 (1085)
Q Consensus 315 ~v~~~-~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~--~~~~ 385 (1085)
.++.. .....|+|+ +|+.+||++||+++. +.. ..++..++ |+|+||||+++|+.|+++ +.++
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 98853 223356777 999999999999884 322 22333343 999999999999999877 7788
Q ss_pred HHHHHHhhhcCCCchHHHHHHhhcCCCCHhH-HHHHhhhhcccCCCCH--HHHHHHHhhCCC-CcchhhHHHhhccceEE
Q 044535 386 WESALNKLRKNPNMEIQNVLRITYDTLDDEE-KAIFLDIACFFKGDNR--DHVTTILDGCGF-STEIGISVLIDKCLITV 461 (1085)
Q Consensus 386 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~--~~l~~~~~~~g~-~~~~~i~~L~~~~Li~~ 461 (1085)
|+.. ....+..+|+.||+.|++++ |+||++||+||+++.+ +.+..+|.+.|. .++..++.|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8763 34679999999999999999 9999999999998754 568889988863 36678999999999998
Q ss_pred c--CCceeechHHHHHh
Q 044535 462 T--DDRLLMHDLLQEMG 476 (1085)
Q Consensus 462 ~--~~~~~mHdli~~~~ 476 (1085)
. .++|.|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 46899999998854
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-32 Score=338.33 Aligned_cols=423 Identities=18% Similarity=0.178 Sum_probs=289.9
Q ss_pred ccccCCCcceeeeccccccccccccEEEEecCCcccCcccccceee-cccccccCCceeEEEeeCCCCCCC-CCCC-CCC
Q 044535 516 ISLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHL-CQGLEILSNELRYLHWHRYPLKSL-PSNF-NPE 592 (1085)
Q Consensus 516 i~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~ 592 (1085)
..+|++.+....+.+..|.++++|++|++++|.+ ..+ +..+.. ..+|++|++++|.+..+ |..+ .++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i---------~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI---------YWIHEDTFQS-QHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC---------CEECTTTTTT-CTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCcc---------ceeChhhccC-ccccCeeeCCCCcccccChhhhcccc
Confidence 3567888888888889999999999999999876 233 333444 45899999999999887 4455 899
Q ss_pred CceEEecCCCCchhh-hHhhhhccccceecccCCCCCC-CCCCCCCCCcccEEeccCcccccccC---CCCCCcc--EEe
Q 044535 593 NLVELDMHHSNLEHL-WEEMQHALNLRRIDLSYSLHLN-ETPDLSSARNLEIMVLDGCYSLIKFP---KTSWSIT--ELD 665 (1085)
Q Consensus 593 ~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~-~~~~l~~l~~L~~L~L~~~~~l~~~~---~~~~~L~--~L~ 665 (1085)
+|++|++++|.+..+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|......+ ..+.+|+ .|+
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 999999999999987 5668999999999999998876 44677779999999999986543322 3456777 899
Q ss_pred cCCCccccccccccCCCcccEEEccCCCCCCccC--------------------------CcccCC--CCccEEEecccC
Q 044535 666 LGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLP--------------------------SSICNL--TSLTELALHGCS 717 (1085)
Q Consensus 666 Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp--------------------------~~l~~l--~~L~~L~L~~~~ 717 (1085)
+++|.+..+++......+|+.|++++|......+ ..+..+ .+|+.|++++|.
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 9999999888777677778888877764211100 011111 156777777765
Q ss_pred CCccCCCC---CCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch-h
Q 044535 718 NITKFPDI---SGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-I 793 (1085)
Q Consensus 718 ~~~~~p~~---~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~ 793 (1085)
.....+.. +.+|+.|++++|.+..+|..+..+++|++|++++|...+..|..+..+++|++|++++|.....+|. .
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 44433332 3466677777777777777777777777777777776666666677777777777777766544443 3
Q ss_pred hcCCCCccEEEccCCCCccc---CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-C-cc
Q 044535 794 LESMERLETLYLAGTPIKEL---PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-P-SA 868 (1085)
Q Consensus 794 l~~l~~L~~L~L~~~~i~~l---p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p-~~ 868 (1085)
+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|.+... | ..
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 420 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-----PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-----CEEECTTTTTTCTTCSEEECTTCCEECCTTCCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-----CCcCCHHHhcCCccCCeEECCCCcCCCcccchh
Confidence 66777777777777777654 4566777777777777776 5555555666777777777777777643 2 33
Q ss_pred cCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccccccc-cC---CCCCCCCCCeEEEeCCCCCCcccCCCcccc
Q 044535 869 LTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQS-LQ---EFPSPLRLVNLQAHECIYLETVPASADVEF 941 (1085)
Q Consensus 869 l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~-lp---~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~ 941 (1085)
+..+++|+.|++++|.++..+ +..+++|+.|++++|+.-.. +| .+..+.+|+.|++++|..-...|....
T Consensus 421 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--- 497 (606)
T 3t6q_A 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT--- 497 (606)
T ss_dssp TTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT---
T ss_pred hhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc---
Confidence 667777777777777776653 55667777777777654321 11 244555666777777643322232221
Q ss_pred ccccCCCccceeecCee
Q 044535 942 TVSWSSQQYFTFFNSSV 958 (1085)
Q Consensus 942 ~~~~~~~~~l~~~~~~~ 958 (1085)
....++.+++.++.+
T Consensus 498 --~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 498 --SLKMMNHVDLSHNRL 512 (606)
T ss_dssp --TCTTCCEEECCSSCC
T ss_pred --cccCCCEEECCCCcc
Confidence 234455555555443
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-32 Score=337.81 Aligned_cols=418 Identities=19% Similarity=0.156 Sum_probs=301.3
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCC-CCCC-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSL-PSNF-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 594 (1085)
.+|++.+....+.+..|.++++|++|++++|.+ ..++.......++|++|++++|.+..+ |..+ ++++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI---------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCcc---------cccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 467777777788888999999999999999876 334333333345899999999999988 5666 89999
Q ss_pred eEEecCCCCchhhh-HhhhhccccceecccCCCCCC-CCC-CCCCCCcccEEeccCcccccccCCCCCC-------ccEE
Q 044535 595 VELDMHHSNLEHLW-EEMQHALNLRRIDLSYSLHLN-ETP-DLSSARNLEIMVLDGCYSLIKFPKTSWS-------ITEL 664 (1085)
Q Consensus 595 ~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~-~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~-------L~~L 664 (1085)
++|++++|.+..++ ..++.+++|++|++++|.+.. .+| .++++++|++|++++|......+..+.. +.+|
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 99999999998877 568999999999999998765 445 4999999999999998755444444432 4489
Q ss_pred ecCCCccccccccccCCCcccEEEccCCCCC-------------------------------------------------
Q 044535 665 DLGETAIEEVPPAIESLGKLVVLRLDNCRRL------------------------------------------------- 695 (1085)
Q Consensus 665 ~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~------------------------------------------------- 695 (1085)
++++|.+..+++......+|+.|++++|...
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 9999999988887766668888888876532
Q ss_pred ---------CccCCcccCCCCccEEEecccCCCccCCCC--CCCccccCcccccccccCcccccCCCCCEEEccCCcccc
Q 044535 696 ---------KNLPSSICNLTSLTELALHGCSNITKFPDI--SGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLK 764 (1085)
Q Consensus 696 ---------~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~--~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 764 (1085)
..+|. +..+++|+.|++++|.. ..+|.. ..+|+.|++++|.+..+|. + .+++|+.|++++|....
T Consensus 267 ~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l~~lp~-~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFPT-L-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCCSSCCC-C-CCSSCCEEEEESCSSCE
T ss_pred eccccccccccccc-cccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccCccccc-C-CCCccceeeccCCcCcc
Confidence 11222 45567777777777643 444422 2367777888888877773 4 77788888888776555
Q ss_pred cccccccCCCCCcEEEeeCCCCCCC--cchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCc
Q 044535 765 RVSSSICKLKSLEILYLFGCSKLEG--LPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLP 842 (1085)
Q Consensus 765 ~l~~~l~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~ 842 (1085)
.+ .+..+++|++|++++|..... .|..+..+++|++|++++|.++.+|..+..+++|+.|++++|. +...+
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-----l~~~~ 415 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-----LKRVT 415 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-----EESTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-----cCCcc
Confidence 44 456777888888887755433 3667777888888888888888788777888888888888887 55554
Q ss_pred h-hhhcCCCCccEEecCCCCCCC-CCcccCCCCCCCEEECCCCCCCc--CC--CCCCCCCCEeeccccccccccCC-CCC
Q 044535 843 L-ALLSGLCSLTELHLNDCNLLE-LPSALTCLSSLEILGLSGNIFES--LN--LKPFSCLTHLNVSYCKRLQSLQE-FPS 915 (1085)
Q Consensus 843 ~-~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~--l~--~~~l~~L~~L~l~~c~~L~~lp~-l~~ 915 (1085)
+ ..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.+++ ++ +..+++|+.|++++|......|. +..
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 495 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence 4 457777888888888887774 55667777888888888887775 33 66777888888887754444443 556
Q ss_pred CCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeE
Q 044535 916 PLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 916 ~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
+.+|+.|++++|......|.... ....++.+++.++.+.
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYN-----QLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTT-----TCTTCCEEECTTSCCC
T ss_pred cccCCEEECCCCcCCCcCHHHcc-----CCCcCCEEECCCCcCc
Confidence 66777788877754433343221 2345666666665544
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.6e-34 Score=348.72 Aligned_cols=335 Identities=15% Similarity=0.164 Sum_probs=165.1
Q ss_pred CCCCCC-CCCCceEEecCCCCchh------------------hhHhhh--hccccceecccCCCCCCCCCC-CCCCCccc
Q 044535 584 SLPSNF-NPENLVELDMHHSNLEH------------------LWEEMQ--HALNLRRIDLSYSLHLNETPD-LSSARNLE 641 (1085)
Q Consensus 584 ~lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~ 641 (1085)
.+|..+ ++++|++|+|++|.+.. +|..+. ++++|++|++++|.+...+|. ++++++|+
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 345444 55566666666666555 555555 566666666666555555553 55566666
Q ss_pred EEeccCcc-ccc-ccCCCC---------CCccEEecCCCccccccc--cccCCCcccEEEccCCCCCCccCCcccCCCCc
Q 044535 642 IMVLDGCY-SLI-KFPKTS---------WSITELDLGETAIEEVPP--AIESLGKLVVLRLDNCRRLKNLPSSICNLTSL 708 (1085)
Q Consensus 642 ~L~L~~~~-~l~-~~~~~~---------~~L~~L~Ls~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L 708 (1085)
+|++++|. ... .+|..+ .+|++|++++|.+..+|. .++++++|++|++++|...+.+| .++.+++|
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence 66666554 222 233221 455555555555555555 55555555555555554444555 45555555
Q ss_pred cEEEecccCCCccCCCCCC---C-ccccCcccccccccCcccccCC--CCCEEEccCCccccccccccc-------CCCC
Q 044535 709 TELALHGCSNITKFPDISG---D-MKYLSLSETAIEELPSSVECLT--ELTVLRLQKCKRLKRVSSSIC-------KLKS 775 (1085)
Q Consensus 709 ~~L~L~~~~~~~~~p~~~~---~-L~~L~L~~~~i~~lp~~l~~l~--~L~~L~L~~~~~~~~l~~~l~-------~l~~ 775 (1085)
++|++++|... .+|..+. + |+.|++++|.+..+|..+..++ +|+.|++++|.+.+.+|..+. .+++
T Consensus 356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 55555554322 4443322 2 4445555555555555444433 555555555555554444444 4445
Q ss_pred CcEEEeeCCCCCCCcch-hhcCCCCccEEEccCCCCcccCccccC--------CCCCCEEEccCCCchhhhccCCchhhh
Q 044535 776 LEILYLFGCSKLEGLPE-ILESMERLETLYLAGTPIKELPSSIDH--------LPQLSLLSLENCKNILVFLTNLPLALL 846 (1085)
Q Consensus 776 L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~~~i~~lp~~l~~--------l~~L~~L~L~~~~~l~~~l~~l~~~~~ 846 (1085)
|++|++++|... .+|. .+..+++|++|++++|.++.+|..+.. +++|+.|+|++|. ++.+|....
T Consensus 435 L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~lp~~~~ 508 (636)
T 4eco_A 435 VSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-----LTKLSDDFR 508 (636)
T ss_dssp EEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-----CCBCCGGGS
T ss_pred CCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-----CCccChhhh
Confidence 555555554443 2332 233455555555555555544443221 1155555555554 444443222
Q ss_pred -cCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCC------CCCC-cCC--CCCCCCCCEeeccccccccccCCCCCC
Q 044535 847 -SGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSG------NIFE-SLN--LKPFSCLTHLNVSYCKRLQSLQEFPSP 916 (1085)
Q Consensus 847 -~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~------n~l~-~l~--~~~l~~L~~L~l~~c~~L~~lp~l~~~ 916 (1085)
..+++|+.|+|++|+++.+|..+..+++|+.|+|++ |++. .+| +..+++|+.|+|++|.. +.+|....
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~- 586 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT- 586 (636)
T ss_dssp TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-
T ss_pred hccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-
Confidence 245555555555555555555555555555555532 2222 222 44445555555555443 44443111
Q ss_pred CCCCeEEEeCCC
Q 044535 917 LRLVNLQAHECI 928 (1085)
Q Consensus 917 ~~L~~L~i~~c~ 928 (1085)
.+|+.|++++|+
T Consensus 587 ~~L~~L~Ls~N~ 598 (636)
T 4eco_A 587 PNISVLDIKDNP 598 (636)
T ss_dssp TTCCEEECCSCT
T ss_pred CcCCEEECcCCC
Confidence 234455555443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.5e-32 Score=331.05 Aligned_cols=421 Identities=20% Similarity=0.212 Sum_probs=306.2
Q ss_pred ccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCC--CCCCCCCCce
Q 044535 518 LDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSL--PSNFNPENLV 595 (1085)
Q Consensus 518 ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l--p~~~~l~~L~ 595 (1085)
++++.+....+.+..|.++++|++|++.+|.+. .+.........+|++|++++|.+..+ |..+.+++|+
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~---------~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGIS---------SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCS---------CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCcc---------cCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence 344444444555556666666666666665441 11111122234688888888888776 5555788888
Q ss_pred EEecCCCCchhh-hHhhhhccccc--eecccCCCCCCCCCCCCCCCcccEEeccCccccccc------------------
Q 044535 596 ELDMHHSNLEHL-WEEMQHALNLR--RIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKF------------------ 654 (1085)
Q Consensus 596 ~L~L~~~~i~~l-~~~~~~l~~L~--~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~------------------ 654 (1085)
+|++++|.+..+ +..+..+++|+ .|++++|.+....|......+|+.|++++|..+...
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 888888888766 45677888888 788888877777776666677888888776521100
Q ss_pred -------CC----CC--CCccEEecCCCcccccccc-ccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCc
Q 044535 655 -------PK----TS--WSITELDLGETAIEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNIT 720 (1085)
Q Consensus 655 -------~~----~~--~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 720 (1085)
+. .+ .+|+.|++++|.+..++.. ++.+++|++|++++|. +..+|..+..+++|++|++++|....
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSB
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECccCCcCc
Confidence 00 00 1678899999998888765 7889999999999875 55788888889999999999887655
Q ss_pred cCCCC---CCCccccCccccccc-ccCcc-cccCCCCCEEEccCCcccccc--cccccCCCCCcEEEeeCCCCCCCcchh
Q 044535 721 KFPDI---SGDMKYLSLSETAIE-ELPSS-VECLTELTVLRLQKCKRLKRV--SSSICKLKSLEILYLFGCSKLEGLPEI 793 (1085)
Q Consensus 721 ~~p~~---~~~L~~L~L~~~~i~-~lp~~-l~~l~~L~~L~L~~~~~~~~l--~~~l~~l~~L~~L~L~~~~~l~~lp~~ 793 (1085)
..|.. +.+|+.|++++|.+. .+|.. +..+++|+.|++++|...+.. +..+..+++|++|++++|......|..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 54433 457888899988876 56554 788999999999998877655 667888999999999998877777788
Q ss_pred hcCCCCccEEEccCCCCccc-C-ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC--C--Cc
Q 044535 794 LESMERLETLYLAGTPIKEL-P-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE--L--PS 867 (1085)
Q Consensus 794 l~~l~~L~~L~L~~~~i~~l-p-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~--l--p~ 867 (1085)
+..+++|+.|++++|.++.. | ..+..+++|+.|++++|. +...++..+..+++|++|+|++|.+.. + +.
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 470 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-----LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC-----CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc-----cCCcCHHHHhCCCCCCEEECCCCCCCccccccch
Confidence 88899999999999988754 2 347888999999999998 666766678889999999999998875 2 35
Q ss_pred ccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccccccccC-CCCCCCCCCeEEEeCCCCCCcccCCCcccccc
Q 044535 868 ALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQ-EFPSPLRLVNLQAHECIYLETVPASADVEFTV 943 (1085)
Q Consensus 868 ~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp-~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~ 943 (1085)
.+..+++|+.|++++|.+++++ +..+++|+.|++++|+.....| .+.....| .|++++|.-....|....
T Consensus 471 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~----- 544 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP----- 544 (606)
T ss_dssp GGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH-----
T ss_pred hhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc-----
Confidence 6888899999999999988874 7788899999999886555444 36666777 888888864433222111
Q ss_pred ccCCCccceeecCeeE
Q 044535 944 SWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 944 ~~~~~~~l~~~~~~~~ 959 (1085)
....++.+.+.++.+.
T Consensus 545 ~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLD 560 (606)
T ss_dssp HHHTSSEEECTTCCEE
T ss_pred cCCCCCEEeCCCCCcc
Confidence 2345677777776655
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.3e-33 Score=339.53 Aligned_cols=398 Identities=17% Similarity=0.144 Sum_probs=326.8
Q ss_pred ccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCC---------------------------
Q 044535 537 HQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNF--------------------------- 589 (1085)
Q Consensus 537 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--------------------------- 589 (1085)
.+++.|++.++... ..++..+..+. +|++|++++|.+..-+..+
T Consensus 81 ~~V~~L~L~~~~l~--------g~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~ 151 (636)
T 4eco_A 81 GRVTGLSLEGFGAS--------GRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVD 151 (636)
T ss_dssp CCEEEEECTTSCCE--------EEECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTC
T ss_pred CCEEEEEecCcccC--------CcCChHHhcCc-cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhc
Confidence 47888999887652 45666776665 8999999988542111100
Q ss_pred ---------------------------CCCCceEEecC--CCCchhhhHhhhhccccceecccCCCCCCC----------
Q 044535 590 ---------------------------NPENLVELDMH--HSNLEHLWEEMQHALNLRRIDLSYSLHLNE---------- 630 (1085)
Q Consensus 590 ---------------------------~l~~L~~L~L~--~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~---------- 630 (1085)
....++.+.+. +|+++.+|..++++++|++|+|++|.+...
T Consensus 152 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 152 YDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp CCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 01112222222 567778999999999999999999998773
Q ss_pred -------CC-CCC--CCCcccEEeccCcccccccCCCC---CCccEEecCCCc-cc--cccccccCC------CcccEEE
Q 044535 631 -------TP-DLS--SARNLEIMVLDGCYSLIKFPKTS---WSITELDLGETA-IE--EVPPAIESL------GKLVVLR 688 (1085)
Q Consensus 631 -------~~-~l~--~l~~L~~L~L~~~~~l~~~~~~~---~~L~~L~Ls~~~-i~--~lp~~i~~l------~~L~~L~ 688 (1085)
+| .++ ++++|++|++++|.....+|..+ .+|++|++++|. +. .+|..++.+ ++|++|+
T Consensus 232 ~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~ 311 (636)
T 4eco_A 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIY 311 (636)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEE
T ss_pred cchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEE
Confidence 55 578 99999999999999888888654 589999999998 87 489888876 9999999
Q ss_pred ccCCCCCCccCC--cccCCCCccEEEecccCCCccCCCCC---CCccccCcccccccccCcccccCCC-CCEEEccCCcc
Q 044535 689 LDNCRRLKNLPS--SICNLTSLTELALHGCSNITKFPDIS---GDMKYLSLSETAIEELPSSVECLTE-LTVLRLQKCKR 762 (1085)
Q Consensus 689 L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~---~~L~~L~L~~~~i~~lp~~l~~l~~-L~~L~L~~~~~ 762 (1085)
+++|... .+|. .++++++|++|++++|...+.+| .+ .+|+.|++++|.+..+|..+..+++ |+.|++++|.+
T Consensus 312 L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 312 IGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred CCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence 9998765 8998 89999999999999998776888 44 4788899999999999999999999 99999999997
Q ss_pred cccccccccCCC--CCcEEEeeCCCCCCCcchhhc-------CCCCccEEEccCCCCcccCccc-cCCCCCCEEEccCCC
Q 044535 763 LKRVSSSICKLK--SLEILYLFGCSKLEGLPEILE-------SMERLETLYLAGTPIKELPSSI-DHLPQLSLLSLENCK 832 (1085)
Q Consensus 763 ~~~l~~~l~~l~--~L~~L~L~~~~~l~~lp~~l~-------~l~~L~~L~L~~~~i~~lp~~l-~~l~~L~~L~L~~~~ 832 (1085)
. .+|..+..++ +|+.|++++|......|..+. .+++|++|++++|.++.+|..+ ..+++|+.|+|++|.
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 7 7888777655 899999999999888888887 7889999999999999999765 569999999999999
Q ss_pred chhhhccCCchhhhcCCC-------CccEEecCCCCCCCCCcccC--CCCCCCEEECCCCCCCcCC--CCCCCCCCEeec
Q 044535 833 NILVFLTNLPLALLSGLC-------SLTELHLNDCNLLELPSALT--CLSSLEILGLSGNIFESLN--LKPFSCLTHLNV 901 (1085)
Q Consensus 833 ~l~~~l~~l~~~~~~~l~-------~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l 901 (1085)
++.+|...+.... +|+.|+|++|.++.+|..+. .+++|+.|+|++|.++.+| +..+++|+.|+|
T Consensus 469 -----l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 469 -----LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp -----CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred -----CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 6777776555443 99999999999999999887 9999999999999999987 788999999999
Q ss_pred cc------cccccccC-CCCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeE
Q 044535 902 SY------CKRLQSLQ-EFPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 902 ~~------c~~L~~lp-~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
++ |.....+| .+..+.+|+.|++++|.. +.+|.... ..++.+++.++.+.
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-------~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-------PNISVLDIKDNPNI 600 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-------TTCCEEECCSCTTC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-------CcCCEEECcCCCCc
Confidence 65 44556677 466778899999999986 88887632 56778887776554
No 13
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=340.80 Aligned_cols=302 Identities=21% Similarity=0.264 Sum_probs=226.6
Q ss_pred cccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHH--H-hccCc-ceEEEeehhhhhhhhcH
Q 044535 165 TSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDR--I-ANQFE-GCCFLENVREESAKRGV 240 (1085)
Q Consensus 165 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~-~~~F~-~~~~~~~~~~~s~~~~~ 240 (1085)
..|.....||||+.++++|.++|....++.++|+|+||||+||||||+++|++ + ..+|+ .++|+. +...... .+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~-~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKS-GL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHH-HH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchH-HH
Confidence 34566788999999999999999765567899999999999999999999974 3 78896 556654 3222111 11
Q ss_pred HHHHHHHHHHHhcCCC---CCCCCCccchHHHHHhhcC--CceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 044535 241 HRLQEELFSRLLEDGD---LSLGASGLGHTFMNTRLRR--KTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQ 315 (1085)
Q Consensus 241 ~~l~~~ll~~~~~~~~---~~~~~~~~~~~~l~~~l~~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 315 (1085)
......+...+..... ....+.......+...+.+ +++||||||||+..+++.+ ++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 2222223333332111 1112223344556666655 7999999999998776543 57899999999998
Q ss_pred hhhcCCCeEEEee---cCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhcCCCHHHHHHHHHh
Q 044535 316 VLKTGVDEMYEVE---ELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLFGRSKRDWESALNK 392 (1085)
Q Consensus 316 v~~~~~~~~~~l~---~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~~~~~~~w~~~l~~ 392 (1085)
++.......|++. +|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++.+. .+|...++.
T Consensus 269 ~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~ 344 (591)
T 1z6t_A 269 VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQ 344 (591)
T ss_dssp GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHH
Confidence 8765334567765 899999999999988642 223345789999999999999999999998664 368888887
Q ss_pred hhcCC-----------CchHHHHHHhhcCCCCHhHHHHHhhhhcccCCCCH--HHHHHHHhhCCCCcchhhHHHhhccce
Q 044535 393 LRKNP-----------NMEIQNVLRITYDTLDDEEKAIFLDIACFFKGDNR--DHVTTILDGCGFSTEIGISVLIDKCLI 459 (1085)
Q Consensus 393 l~~~~-----------~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~--~~l~~~~~~~g~~~~~~i~~L~~~~Li 459 (1085)
+.... ...+..++..||+.|++++|.||+++||||.+..+ +.+..+|...+...+..+..|+++|||
T Consensus 345 l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll 424 (591)
T 1z6t_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLL 424 (591)
T ss_dssp HHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCe
Confidence 76532 24688999999999999999999999999987654 567888876655567789999999999
Q ss_pred EEcC----CceeechHHHHHhcee
Q 044535 460 TVTD----DRLLMHDLLQEMGWGI 479 (1085)
Q Consensus 460 ~~~~----~~~~mHdli~~~~~~i 479 (1085)
+... .+|.||+++|+++++.
T Consensus 425 ~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 425 FCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp EEEEETTEEEEECCHHHHHHHHHH
T ss_pred EEecCCCccEEEEcHHHHHHHHhh
Confidence 8652 2699999999999876
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=3e-31 Score=330.96 Aligned_cols=340 Identities=16% Similarity=0.167 Sum_probs=280.5
Q ss_pred CCCCCCCCCC-CCCCceEEecCCCCchh------------------hhHhhh--hccccceecccCCCCCCCCCC-CCCC
Q 044535 580 YPLKSLPSNF-NPENLVELDMHHSNLEH------------------LWEEMQ--HALNLRRIDLSYSLHLNETPD-LSSA 637 (1085)
Q Consensus 580 ~~l~~lp~~~-~l~~L~~L~L~~~~i~~------------------l~~~~~--~l~~L~~L~Ls~~~~~~~~~~-l~~l 637 (1085)
|.+..+|..+ ++++|++|+|++|.+.. +|..+. ++++|++|+|++|.+...+|. +.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 3444488777 88999999999999988 888877 999999999999988888884 8999
Q ss_pred CcccEEeccCccccc--ccCC----------CCCCccEEecCCCccccccc--cccCCCcccEEEccCCCCCCccCCccc
Q 044535 638 RNLEIMVLDGCYSLI--KFPK----------TSWSITELDLGETAIEEVPP--AIESLGKLVVLRLDNCRRLKNLPSSIC 703 (1085)
Q Consensus 638 ~~L~~L~L~~~~~l~--~~~~----------~~~~L~~L~Ls~~~i~~lp~--~i~~l~~L~~L~L~~~~~~~~lp~~l~ 703 (1085)
++|++|++++|..+. .+|. .+.+|+.|++++|.+..+|. .++++++|++|+|++|... .+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhc
Confidence 999999999997332 3443 34489999999999999999 8999999999999998755 888 789
Q ss_pred CCCCccEEEecccCCCccCCCCCC---C-ccccCcccccccccCcccccCCC--CCEEEccCCccccccccc---cc--C
Q 044535 704 NLTSLTELALHGCSNITKFPDISG---D-MKYLSLSETAIEELPSSVECLTE--LTVLRLQKCKRLKRVSSS---IC--K 772 (1085)
Q Consensus 704 ~l~~L~~L~L~~~~~~~~~p~~~~---~-L~~L~L~~~~i~~lp~~l~~l~~--L~~L~L~~~~~~~~l~~~---l~--~ 772 (1085)
++++|+.|+|++|... .+|..+. + |+.|++++|.+..+|..+..++. |+.|+|++|.+.+.+|.. +. .
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 9999999999998765 7776554 5 88899999999999988877754 999999999988766532 22 3
Q ss_pred CCCCcEEEeeCCCCCCCcchhh-cCCCCccEEEccCCCCcccCccccCC--------CCCCEEEccCCCchhhhccCCch
Q 044535 773 LKSLEILYLFGCSKLEGLPEIL-ESMERLETLYLAGTPIKELPSSIDHL--------PQLSLLSLENCKNILVFLTNLPL 843 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~i~~lp~~l~~l--------~~L~~L~L~~~~~l~~~l~~l~~ 843 (1085)
+++|+.|++++|... .+|..+ ..+++|+.|+|++|.++.+|..+... ++|+.|+|++|. ++.+|.
T Consensus 672 ~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-----L~~lp~ 745 (876)
T 4ecn_A 672 GINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-----LTSLSD 745 (876)
T ss_dssp CCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-----CCCCCG
T ss_pred CCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-----CccchH
Confidence 458999999998776 566554 58999999999999999998865443 389999999998 777886
Q ss_pred hhh-cCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCC------CCCCc-CC--CCCCCCCCEeeccccccccccCC-
Q 044535 844 ALL-SGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSG------NIFES-LN--LKPFSCLTHLNVSYCKRLQSLQE- 912 (1085)
Q Consensus 844 ~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~------n~l~~-l~--~~~l~~L~~L~l~~c~~L~~lp~- 912 (1085)
... ..+++|+.|+|++|.+..+|..+..+++|+.|+|++ |++.. +| +..+++|+.|+|++|.. ..+|.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred HhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 443 489999999999999999999999999999999977 55543 34 77899999999999876 88886
Q ss_pred CCCCCCCCeEEEeCCCCCC
Q 044535 913 FPSPLRLVNLQAHECIYLE 931 (1085)
Q Consensus 913 l~~~~~L~~L~i~~c~~L~ 931 (1085)
+. .+|+.|++++|+...
T Consensus 825 l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNIS 841 (876)
T ss_dssp CC--SSSCEEECCSCTTCE
T ss_pred hc--CCCCEEECCCCCCCc
Confidence 44 377899999998543
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=3e-31 Score=326.23 Aligned_cols=415 Identities=20% Similarity=0.189 Sum_probs=267.4
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceee-cccccccCCceeEEEeeCCCCCCCCC-CC-CCCC
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHL-CQGLEILSNELRYLHWHRYPLKSLPS-NF-NPEN 593 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~ 593 (1085)
.+|++.+....+.+.+|.++++|++|++++|.+ ..+ +..+..+ .+|++|++++|.+..++. .+ .+++
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l---------~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI---------QSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------CCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCcc---------cccChhhcCCc-ccCCEEEccCCccccccccccCCCCC
Confidence 457777777778888899999999999998876 233 3444444 479999999999988873 34 8899
Q ss_pred ceEEecCCCCch--hhhHhhhhccccceecccCCCCCCCCCC-CCCCCccc----EEeccCcccccccCCCC---CCccE
Q 044535 594 LVELDMHHSNLE--HLWEEMQHALNLRRIDLSYSLHLNETPD-LSSARNLE----IMVLDGCYSLIKFPKTS---WSITE 663 (1085)
Q Consensus 594 L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~----~L~L~~~~~l~~~~~~~---~~L~~ 663 (1085)
|++|++++|.+. .+|..+.++++|++|++++|.+....+. +..+.+|+ +|++++|... .++... .+|++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~ 208 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHE 208 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTCEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCceeee
Confidence 999999999987 4788899999999999999877665553 44444443 5666666432 222211 14555
Q ss_pred EecCCCccc----------------------------------------------------------cccccccCCCccc
Q 044535 664 LDLGETAIE----------------------------------------------------------EVPPAIESLGKLV 685 (1085)
Q Consensus 664 L~Ls~~~i~----------------------------------------------------------~lp~~i~~l~~L~ 685 (1085)
|++++|.+. ...+.+..+++|+
T Consensus 209 L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred eeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCC
Confidence 555555432 1111245566777
Q ss_pred EEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC-CCCccccCccccccc-ccCcccccCCCCCEEEccCCccc
Q 044535 686 VLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI-SGDMKYLSLSETAIE-ELPSSVECLTELTVLRLQKCKRL 763 (1085)
Q Consensus 686 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~-~~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~ 763 (1085)
.|++++|.. ..+| .+..+++|++|++++|.. +.+|.. ..+|+.|++++|... .+ .+..+++|+.|++++|...
T Consensus 289 ~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 289 AMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EEEecCccc-hhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 777776543 4555 466677777777777655 555542 345666677666332 22 4556777777777777655
Q ss_pred cc--ccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc--cccCCCCCCEEEccCCCchhhhcc
Q 044535 764 KR--VSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS--SIDHLPQLSLLSLENCKNILVFLT 839 (1085)
Q Consensus 764 ~~--l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~~l~ 839 (1085)
+. +|..+..+++|++|++++|.. ..+|..+..+++|+.|++++|.+..++. .+..+++|+.|++++|. +.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l~ 437 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-----TK 437 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC-----CE
T ss_pred CCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC-----CC
Confidence 43 355566677777777776653 3355666667777777777777665443 56677777777777776 44
Q ss_pred CCchhhhcCCCCccEEecCCCCCCC--CCcccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccccccccC-CC
Q 044535 840 NLPLALLSGLCSLTELHLNDCNLLE--LPSALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQ-EF 913 (1085)
Q Consensus 840 ~l~~~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp-~l 913 (1085)
..++..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.++.++ +..+++|+.|++++|+.....| .+
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 4444556677777777777777664 5666777777777777777776654 5666777777777765444334 25
Q ss_pred CCCCCCCeEEEeCCCCCCcccCCCcccccccc-CCCccceeecCeeE
Q 044535 914 PSPLRLVNLQAHECIYLETVPASADVEFTVSW-SSQQYFTFFNSSVS 959 (1085)
Q Consensus 914 ~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 959 (1085)
..+.+|+.|++++|. +..+|.... .. .+++.+.+.++.+.
T Consensus 518 ~~l~~L~~L~l~~N~-l~~~p~~~~-----~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNR-IETSKGILQ-----HFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp TTCTTCCEEECTTSC-CCCEESCGG-----GSCTTCCEEECCSCCCC
T ss_pred cCCCcCCEEECCCCc-CcccCHhHh-----hhcccCcEEEccCCCcc
Confidence 555666677777665 556665421 11 23555655555443
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.4e-31 Score=324.71 Aligned_cols=419 Identities=23% Similarity=0.225 Sum_probs=314.9
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCC-CC-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPS-NF-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L 594 (1085)
.+|++.+....+.+..|.++++|++|++++|.+ ..++........+|++|++++|.+..+|. .| .+++|
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCC---------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcC---------CccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence 467777777778888999999999999998865 33443333334589999999999988874 44 89999
Q ss_pred eEEecCCCCchhhhH-hhhhccccceecccCCCCCC-CCC-CCCCCCcccEEeccCcccccccCCCC---CCc----cEE
Q 044535 595 VELDMHHSNLEHLWE-EMQHALNLRRIDLSYSLHLN-ETP-DLSSARNLEIMVLDGCYSLIKFPKTS---WSI----TEL 664 (1085)
Q Consensus 595 ~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~-~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~---~~L----~~L 664 (1085)
++|++++|.+..++. .++.+++|++|++++|.+.. .+| .++++++|++|++++|......+..+ .+| +.|
T Consensus 103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 999999999998876 58899999999999998765 345 48899999999999986543333322 345 788
Q ss_pred ecCCCccccccccccCCCcccEEEccCCC---------------------------------------------------
Q 044535 665 DLGETAIEEVPPAIESLGKLVVLRLDNCR--------------------------------------------------- 693 (1085)
Q Consensus 665 ~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~--------------------------------------------------- 693 (1085)
++++|.+..+++......+|+.|++++|.
T Consensus 183 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred ccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 99999988877665555578888877652
Q ss_pred -------CCCccCCcccCCCCccEEEecccCCCccCCCCCC--CccccCcccccccccCcccccCCCCCEEEccCCcccc
Q 044535 694 -------RLKNLPSSICNLTSLTELALHGCSNITKFPDISG--DMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLK 764 (1085)
Q Consensus 694 -------~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~--~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 764 (1085)
.....|..+..+++|++|++++|.. ..+|..+. +|+.|++++|.+..+|. ..+++|+.|++++|....
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCC
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeCcCCcccc
Confidence 1223445566778888888888753 34554433 67778888888887776 477888888888887766
Q ss_pred cccccccCCCCCcEEEeeCCCCCCCc--chhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCc
Q 044535 765 RVSSSICKLKSLEILYLFGCSKLEGL--PEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLP 842 (1085)
Q Consensus 765 ~l~~~l~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~ 842 (1085)
..+. ..+++|++|++++|...... |..+..+++|++|++++|.+..+|..+..+++|+.|++++|. +...+
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-----l~~~~ 412 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-----LKQMS 412 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-----EESCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-----ccccc
Confidence 5554 67888999999888655432 677888899999999999988888778889999999999988 55543
Q ss_pred h-hhhcCCCCccEEecCCCCCCC-CCcccCCCCCCCEEECCCCCCC--cCC--CCCCCCCCEeeccccccccccC-CCCC
Q 044535 843 L-ALLSGLCSLTELHLNDCNLLE-LPSALTCLSSLEILGLSGNIFE--SLN--LKPFSCLTHLNVSYCKRLQSLQ-EFPS 915 (1085)
Q Consensus 843 ~-~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~--~l~--~~~l~~L~~L~l~~c~~L~~lp-~l~~ 915 (1085)
+ ..+..+++|+.|++++|.+.. .|..+..+++|+.|++++|.++ .+| +..+++|+.|++++|......| .+..
T Consensus 413 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 492 (570)
T 2z63_A 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492 (570)
T ss_dssp TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc
Confidence 3 457888999999999998885 5667888999999999999886 344 7888899999999886544435 3666
Q ss_pred CCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeE
Q 044535 916 PLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 916 ~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
+.+|+.|++++|. +..++.... ....+++.+.+.++.+.
T Consensus 493 l~~L~~L~l~~n~-l~~~~~~~~----~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 493 LSSLQVLNMASNQ-LKSVPDGIF----DRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CTTCCEEECCSSC-CSCCCTTTT----TTCTTCCEEECCSSCBC
T ss_pred ccCCCEEeCCCCc-CCCCCHHHh----hcccCCcEEEecCCccc
Confidence 7788899998884 555554321 12356677777776655
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=3.6e-30 Score=321.01 Aligned_cols=423 Identities=21% Similarity=0.171 Sum_probs=236.7
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCC-C-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSN-F-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 594 (1085)
.+|++.+....+.+..|.++++|++|++++|.+. ........-..+|++|++++|.+..+|.. | .+++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS---------KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC---------CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC---------ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 3455666556666677888888888888776542 22222222234678888888777777763 4 67788
Q ss_pred eEEecCCCCchhhh-HhhhhccccceecccCCCCCCCCCC-CCCCCcccEEeccCcccccccCC-----CCCCccEEecC
Q 044535 595 VELDMHHSNLEHLW-EEMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLDGCYSLIKFPK-----TSWSITELDLG 667 (1085)
Q Consensus 595 ~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~-----~~~~L~~L~Ls 667 (1085)
++|++++|.+..++ ..+..+++|++|++++|.+....+. +..+++|++|++++|......+. ...+|++|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 88888887777665 4577777888888877776665553 66777777777776643211111 12345555555
Q ss_pred CCccccccc----------------------------------------------------cccCCC--cccEEEccCCC
Q 044535 668 ETAIEEVPP----------------------------------------------------AIESLG--KLVVLRLDNCR 693 (1085)
Q Consensus 668 ~~~i~~lp~----------------------------------------------------~i~~l~--~L~~L~L~~~~ 693 (1085)
+|.+..+++ .+..++ +|++|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 554443322 122222 24444444444
Q ss_pred CCCccCCcccCCCCccEEEecccCCCccCCCCC---CCccccCccccccc------ccCc----ccccCCCCCEEEccCC
Q 044535 694 RLKNLPSSICNLTSLTELALHGCSNITKFPDIS---GDMKYLSLSETAIE------ELPS----SVECLTELTVLRLQKC 760 (1085)
Q Consensus 694 ~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~---~~L~~L~L~~~~i~------~lp~----~l~~l~~L~~L~L~~~ 760 (1085)
.....|..++.+++|++|++++|......|..+ .+|+.|+++++... .+|. .+..+++|+.|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 333333444445555555555444333333222 12333333332211 1221 3344455555555555
Q ss_pred cccccccccccCCCCCcEEEeeC----------------------------CCCCCCcchhhcCCCCccEEEccCCCCc-
Q 044535 761 KRLKRVSSSICKLKSLEILYLFG----------------------------CSKLEGLPEILESMERLETLYLAGTPIK- 811 (1085)
Q Consensus 761 ~~~~~l~~~l~~l~~L~~L~L~~----------------------------~~~l~~lp~~l~~l~~L~~L~L~~~~i~- 811 (1085)
...+..+..+..+++|++|++++ |......|..+..+++|+.|++++|.+.
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 44444444444444444444444 3333334555666677777777777765
Q ss_pred ccC-ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC---CCCcccCCCCCCCEEECCCCCCCc
Q 044535 812 ELP-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL---ELPSALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 812 ~lp-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~l~~ 887 (1085)
.+| ..+..+++|++|++++|. +..++...+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNK-----YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCS-----EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred ccCcccccCcccccEEecCCCC-----cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 344 456667777777777776 55555555666677777777776664 356667777777777777777777
Q ss_pred CC---CCCCCCCCEeeccccccccccC----------CCCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccceee
Q 044535 888 LN---LKPFSCLTHLNVSYCKRLQSLQ----------EFPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFF 954 (1085)
Q Consensus 888 l~---~~~l~~L~~L~l~~c~~L~~lp----------~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~ 954 (1085)
++ +..+++|+.|++++|.. ..++ .+..+.+|+.|++++|. +..+|.... .....++.+++.
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~----~~l~~L~~L~Ls 568 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF----KDLFELKIIDLG 568 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT----TTCTTCCEEECC
T ss_pred CChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc----ccccCcceeECC
Confidence 65 56677777777777643 3221 13445566777777663 445554321 122445556555
Q ss_pred cCeeE
Q 044535 955 NSSVS 959 (1085)
Q Consensus 955 ~~~~~ 959 (1085)
++.+.
T Consensus 569 ~N~l~ 573 (680)
T 1ziw_A 569 LNNLN 573 (680)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 54443
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.4e-31 Score=333.90 Aligned_cols=397 Identities=16% Similarity=0.147 Sum_probs=318.4
Q ss_pred ccccEEEEecCCcccCcccccceeecccccccCCceeEEEe-eCCCCCCC------------------------------
Q 044535 537 HQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHW-HRYPLKSL------------------------------ 585 (1085)
Q Consensus 537 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l-~~~~l~~l------------------------------ 585 (1085)
.++..|++.++.+. ..++..+..++ +|++|++ ++|.+...
T Consensus 323 ~~V~~L~Ls~~~L~--------G~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 323 GRVTGLSLAGFGAK--------GRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp SCEEEEECTTTCCE--------EEECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CCEEEEECccCCCC--------CcCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 57888999887652 46677777665 7999999 66532111
Q ss_pred ------------------CC---C--CCCCCceEEecC--CCCchhhhHhhhhccccceecccCCCCCCC----------
Q 044535 586 ------------------PS---N--FNPENLVELDMH--HSNLEHLWEEMQHALNLRRIDLSYSLHLNE---------- 630 (1085)
Q Consensus 586 ------------------p~---~--~~l~~L~~L~L~--~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~---------- 630 (1085)
|. . .....++.+.+. +|++..+|..+.++++|++|+|++|.+...
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s 473 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN 473 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence 00 0 011223333333 367777999999999999999999998871
Q ss_pred -------CC-CCC--CCCcccEEeccCcccccccCCC---CCCccEEecCCCc-ccc--ccccccCCC-------cccEE
Q 044535 631 -------TP-DLS--SARNLEIMVLDGCYSLIKFPKT---SWSITELDLGETA-IEE--VPPAIESLG-------KLVVL 687 (1085)
Q Consensus 631 -------~~-~l~--~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~Ls~~~-i~~--lp~~i~~l~-------~L~~L 687 (1085)
+| .++ ++++|++|+|++|.....+|.. +.+|+.|++++|. +.. +|..++.++ +|++|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 55 566 9999999999999888888864 4689999999998 874 888776655 99999
Q ss_pred EccCCCCCCccCC--cccCCCCccEEEecccCCCccCCCCC---CCccccCcccccccccCcccccCCC-CCEEEccCCc
Q 044535 688 RLDNCRRLKNLPS--SICNLTSLTELALHGCSNITKFPDIS---GDMKYLSLSETAIEELPSSVECLTE-LTVLRLQKCK 761 (1085)
Q Consensus 688 ~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~---~~L~~L~L~~~~i~~lp~~l~~l~~-L~~L~L~~~~ 761 (1085)
++++|... .+|. .++++++|+.|+|++|... .+| .+ .+|+.|++++|.+..+|..+..+++ |+.|+|++|.
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC
Confidence 99998765 8998 8999999999999998765 787 44 4678889999999999999999999 9999999999
Q ss_pred ccccccccccCCCC--CcEEEeeCCCCCCCcchh---hc--CCCCccEEEccCCCCcccCcccc-CCCCCCEEEccCCCc
Q 044535 762 RLKRVSSSICKLKS--LEILYLFGCSKLEGLPEI---LE--SMERLETLYLAGTPIKELPSSID-HLPQLSLLSLENCKN 833 (1085)
Q Consensus 762 ~~~~l~~~l~~l~~--L~~L~L~~~~~l~~lp~~---l~--~l~~L~~L~L~~~~i~~lp~~l~-~l~~L~~L~L~~~~~ 833 (1085)
+. .+|..+..++. |+.|++++|.....+|.. +. .+++|+.|+|++|.++.+|..+. .+++|+.|+|++|.
T Consensus 631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~- 708 (876)
T 4ecn_A 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL- 708 (876)
T ss_dssp CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-
T ss_pred CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-
Confidence 76 78887777654 999999999887655532 22 34589999999999999998764 89999999999998
Q ss_pred hhhhccCCchhhhcCC-------CCccEEecCCCCCCCCCcccC--CCCCCCEEECCCCCCCcCC--CCCCCCCCEeecc
Q 044535 834 ILVFLTNLPLALLSGL-------CSLTELHLNDCNLLELPSALT--CLSSLEILGLSGNIFESLN--LKPFSCLTHLNVS 902 (1085)
Q Consensus 834 l~~~l~~l~~~~~~~l-------~~L~~L~Ls~n~l~~lp~~l~--~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~ 902 (1085)
+..+|...+... ++|+.|+|++|+++.+|..+. .+++|+.|+|++|.++.+| +..+++|+.|+|+
T Consensus 709 ----L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 709 ----MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp ----CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC
T ss_pred ----CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECC
Confidence 777887655543 399999999999999999987 9999999999999999998 7899999999998
Q ss_pred c------cccccccC-CCCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeE
Q 044535 903 Y------CKRLQSLQ-EFPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 903 ~------c~~L~~lp-~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
+ |.....+| .+..+.+|+.|++++|.. +.+|.... .+++.+++.++.+.
T Consensus 785 ~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-------~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-------PQLYILDIADNPNI 840 (876)
T ss_dssp CCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-------SSSCEEECCSCTTC
T ss_pred CCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-------CCCCEEECCCCCCC
Confidence 7 44456667 466788899999999976 88887632 46777777776544
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.3e-31 Score=323.23 Aligned_cols=391 Identities=18% Similarity=0.173 Sum_probs=220.9
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCC-C-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSN-F-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 594 (1085)
.+|++.+....+.+..|.++++|++|++++|.+ ...+........+|++|++++|.+..+|.. + .+++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRI---------NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCC---------CEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCc---------CccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 456666666667777888888888888888765 233322222334788888888888887764 3 78888
Q ss_pred eEEecCCCCchhh--hHhhhhccccceecccCCCCCCCCC--CCCCCCcccEEeccCcccccccCCC---CCCccEEecC
Q 044535 595 VELDMHHSNLEHL--WEEMQHALNLRRIDLSYSLHLNETP--DLSSARNLEIMVLDGCYSLIKFPKT---SWSITELDLG 667 (1085)
Q Consensus 595 ~~L~L~~~~i~~l--~~~~~~l~~L~~L~Ls~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~---~~~L~~L~Ls 667 (1085)
++|++++|.+..+ |..+..+++|++|++++|.....+| .+..+++|++|++++|......|.. +.+|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 8888888888743 5667888888888888887555554 4788888888888888765545544 3467777888
Q ss_pred CCccccccccc-cCCCcccEEEccCCCCCCcc--CCc-ccCCCCccEEEec----------------------------c
Q 044535 668 ETAIEEVPPAI-ESLGKLVVLRLDNCRRLKNL--PSS-ICNLTSLTELALH----------------------------G 715 (1085)
Q Consensus 668 ~~~i~~lp~~i-~~l~~L~~L~L~~~~~~~~l--p~~-l~~l~~L~~L~L~----------------------------~ 715 (1085)
.|.+..+|..+ ..+++|++|++++|...+.. |.. ...+++|+.|+++ +
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 77777776654 45778888888876544321 111 1223444444444 3
Q ss_pred cCCCc--c-------CCCCCCCccccCccccccccc------CcccccCCCCCEEEccCCcccccccccc-cCCCCCcEE
Q 044535 716 CSNIT--K-------FPDISGDMKYLSLSETAIEEL------PSSVECLTELTVLRLQKCKRLKRVSSSI-CKLKSLEIL 779 (1085)
Q Consensus 716 ~~~~~--~-------~p~~~~~L~~L~L~~~~i~~l------p~~l~~l~~L~~L~L~~~~~~~~l~~~l-~~l~~L~~L 779 (1085)
|.... . .+..+++++.|.+.++.+... +.....+++|+.|++++|.. ..+|..+ ..+++|++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L 339 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFL 339 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCCEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCccccEE
Confidence 32111 0 011222333333333322211 11112234455555555543 2344433 345555555
Q ss_pred EeeCCCCCCCcch---hhcCCCCccEEEccCCCCcccC---ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCcc
Q 044535 780 YLFGCSKLEGLPE---ILESMERLETLYLAGTPIKELP---SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLT 853 (1085)
Q Consensus 780 ~L~~~~~l~~lp~---~l~~l~~L~~L~L~~~~i~~lp---~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~ 853 (1085)
++++|.....+|. .++.+++|++|++++|.++.++ ..+..+++|++|+|++|. ++.+|. .+..+++|+
T Consensus 340 ~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~lp~-~~~~~~~L~ 413 (549)
T 2z81_A 340 DLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-----FHPMPD-SCQWPEKMR 413 (549)
T ss_dssp ECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-----CCCCCS-CCCCCTTCC
T ss_pred EccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-----CccCCh-hhccccccc
Confidence 5555554443322 2445555555555555555443 234555555555555555 444443 244455555
Q ss_pred EEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCC
Q 044535 854 ELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHEC 927 (1085)
Q Consensus 854 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c 927 (1085)
.|++++|.+..+|..+. ++|+.|++++|++++++ ..+++|+.|+|++| .++.+|......+|+.|++++|
T Consensus 414 ~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 414 FLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFS-LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN 483 (549)
T ss_dssp EEECTTSCCSCCCTTSC--TTCSEEECCSSCCSCCC-CCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS
T ss_pred EEECCCCCcccccchhc--CCceEEECCCCChhhhc-ccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC
Confidence 55555555555544332 45555555555555543 44555555555554 2345554444445555555554
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=5.3e-30 Score=319.51 Aligned_cols=395 Identities=23% Similarity=0.242 Sum_probs=208.5
Q ss_pred ccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCC-C-CCCCce
Q 044535 518 LDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSN-F-NPENLV 595 (1085)
Q Consensus 518 ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L~ 595 (1085)
++++.+....+...+|.++++|++|++++|.+ ..++.....-..+|++|++++|.+..++.. + .+++|+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSI---------QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCC---------CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred EECCCCccCccChhhhccCCCCCEEECCCCcc---------CccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 44555555555556677777777777776654 222222222234678888887777665433 3 677888
Q ss_pred EEecCCCCchhhhHh-h--hhccccceecccCCCCCCCCCC-CCCC---------------------------CcccEEe
Q 044535 596 ELDMHHSNLEHLWEE-M--QHALNLRRIDLSYSLHLNETPD-LSSA---------------------------RNLEIMV 644 (1085)
Q Consensus 596 ~L~L~~~~i~~l~~~-~--~~l~~L~~L~Ls~~~~~~~~~~-l~~l---------------------------~~L~~L~ 644 (1085)
+|++++|.+..++.. + ..+++|++|++++|.+....|. +..+ ++|+.|+
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 888888777765433 2 2457788888887766554442 3322 3445555
Q ss_pred ccCcccccccCCCC-----CCccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCC
Q 044535 645 LDGCYSLIKFPKTS-----WSITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSN 718 (1085)
Q Consensus 645 L~~~~~l~~~~~~~-----~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 718 (1085)
+++|......|..+ .+|++|++++|.+..++ ..++.+++|++|++++|......|..+..+++|++|++++|..
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~ 308 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBC
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhh
Confidence 55554333333332 23777777777777654 3567777777777777665555555555666666666654321
Q ss_pred Cc-----cCCC-------CCCCccccCcccccccccCc-ccccCCCCCEEEc----------------------------
Q 044535 719 IT-----KFPD-------ISGDMKYLSLSETAIEELPS-SVECLTELTVLRL---------------------------- 757 (1085)
Q Consensus 719 ~~-----~~p~-------~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L---------------------------- 757 (1085)
.. .+|. ...+|+.|++++|.+..++. .+..+++|+.|++
T Consensus 309 ~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp CC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred hcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 11 1111 12344444444444443322 2333333333333
Q ss_pred cCCcccccccccccCCCCCcEEEeeCCCCCCCcc-hhhcCCCCccEEEccCCCCcc------------------------
Q 044535 758 QKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTPIKE------------------------ 812 (1085)
Q Consensus 758 ~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~------------------------ 812 (1085)
++|...+..|..+..+++|+.|++++|.....+| ..+..+++|++|++++|.+..
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 2333333334445555666666666555443333 344555555555555555443
Q ss_pred ---cCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc---------ccCCCCCCCEEEC
Q 044535 813 ---LPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS---------ALTCLSSLEILGL 880 (1085)
Q Consensus 813 ---lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~---------~l~~l~~L~~L~L 880 (1085)
+|..+..+++|+.|+|++|. ++.+++..+.++++|+.|+|++|.++.++. .+..+++|+.|+|
T Consensus 469 ~~~~p~~~~~l~~L~~L~Ls~N~-----l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 469 VDSSPSPFQPLRNLTILDLSNNN-----IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp TTCSSCTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred cccCCcccccCCCCCEEECCCCC-----CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 34445555555555555555 444554445555555555555555553311 1445555555555
Q ss_pred CCCCCCcCC---CCCCCCCCEeeccccccccccCC--CCCCCCCCeEEEeCC
Q 044535 881 SGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQE--FPSPLRLVNLQAHEC 927 (1085)
Q Consensus 881 ~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp~--l~~~~~L~~L~i~~c 927 (1085)
++|.++.++ +..+++|+.|++++| .++.+|. +....+|+.|++++|
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 555555554 344555555555543 2334442 234445555555554
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=3.1e-30 Score=313.23 Aligned_cols=406 Identities=17% Similarity=0.192 Sum_probs=310.1
Q ss_pred ccccEEEEecCCcccCcccccceeec-ccccccCCceeEEEeeCCCCCCCCC-CC-CCCCceEEecCCCCchhhhHh-hh
Q 044535 537 HQLRLLKFFSSSYREGYVEEDKVHLC-QGLEILSNELRYLHWHRYPLKSLPS-NF-NPENLVELDMHHSNLEHLWEE-MQ 612 (1085)
Q Consensus 537 ~~Lr~L~l~~~~~~~~~~~~~~~~~~-~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l~~~-~~ 612 (1085)
++|++|++++|.+ ...+ ..+.. .++|++|++++|.+..++. .+ .+++|++|+|++|.+..++.. +.
T Consensus 26 ~~L~~L~Ls~n~l---------~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNKI---------TYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp TTCCEEECCSSCC---------CEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred CCccEEECcCCcc---------CccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 6899999999876 2332 33433 3589999999999998874 45 899999999999999987765 99
Q ss_pred hccccceecccCCCCCCC--CCCCCCCCcccEEeccCcccccccCC----CCCCccEEecCCCcccc-ccccccCCCccc
Q 044535 613 HALNLRRIDLSYSLHLNE--TPDLSSARNLEIMVLDGCYSLIKFPK----TSWSITELDLGETAIEE-VPPAIESLGKLV 685 (1085)
Q Consensus 613 ~l~~L~~L~Ls~~~~~~~--~~~l~~l~~L~~L~L~~~~~l~~~~~----~~~~L~~L~Ls~~~i~~-lp~~i~~l~~L~ 685 (1085)
.+++|++|++++|.+... .+.+.++++|++|++++|..+..+|. .+.+|++|++++|.+.. .|..++.+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 999999999999987752 34689999999999999986665553 45689999999999986 677899999999
Q ss_pred EEEccCCCCCCccCCcc-cCCCCccEEEecccCCCcc------CCCCCCCccccCccccccc-----ccCcccccCCCCC
Q 044535 686 VLRLDNCRRLKNLPSSI-CNLTSLTELALHGCSNITK------FPDISGDMKYLSLSETAIE-----ELPSSVECLTELT 753 (1085)
Q Consensus 686 ~L~L~~~~~~~~lp~~l-~~l~~L~~L~L~~~~~~~~------~p~~~~~L~~L~L~~~~i~-----~lp~~l~~l~~L~ 753 (1085)
+|++++|.. ..+|..+ ..+++|++|++++|..... +.....+|+.|+++++.+. .++..+..+++|+
T Consensus 176 ~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 176 HLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp EEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred eEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 999998754 4455433 4689999999999875542 2234567888888887765 2344456667777
Q ss_pred EEEccCCcccccc-----------------------------------cccccCCCCCcEEEeeCCCCCCCcchhh-cCC
Q 044535 754 VLRLQKCKRLKRV-----------------------------------SSSICKLKSLEILYLFGCSKLEGLPEIL-ESM 797 (1085)
Q Consensus 754 ~L~L~~~~~~~~l-----------------------------------~~~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l 797 (1085)
.|++++|...+.. +.....+++|+.|++++|.. ..+|..+ ..+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcC
Confidence 7777776543310 00112235788888888754 4677665 579
Q ss_pred CCccEEEccCCCCcc-cC---ccccCCCCCCEEEccCCCchhhhccCCch--hhhcCCCCccEEecCCCCCCCCCcccCC
Q 044535 798 ERLETLYLAGTPIKE-LP---SSIDHLPQLSLLSLENCKNILVFLTNLPL--ALLSGLCSLTELHLNDCNLLELPSALTC 871 (1085)
Q Consensus 798 ~~L~~L~L~~~~i~~-lp---~~l~~l~~L~~L~L~~~~~l~~~l~~l~~--~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 871 (1085)
++|++|++++|.++. +| ..+..+++|+.|+|++|. ++.++. ..+..+++|+.|+|++|+++.+|..+..
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 408 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-----LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-----CCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCc-----ccccccchhhhhcCCCCCEEECCCCCCccCChhhcc
Confidence 999999999999884 33 347789999999999998 666654 4588899999999999999999999999
Q ss_pred CCCCCEEECCCCCCCcCCCCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccc
Q 044535 872 LSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYF 951 (1085)
Q Consensus 872 l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l 951 (1085)
+++|+.|++++|.++.++....++|+.|++++|. ++.++ +...+|+.|++++| .++.+|... ....++.+
T Consensus 409 ~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~-l~~~~--~~l~~L~~L~Ls~N-~l~~ip~~~------~l~~L~~L 478 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNN-LDSFS--LFLPRLQELYISRN-KLKTLPDAS------LFPVLLVM 478 (549)
T ss_dssp CTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSS-CCSSCCCGG------GCTTCCEE
T ss_pred cccccEEECCCCCcccccchhcCCceEEECCCCC-hhhhc--ccCChhcEEECCCC-ccCcCCCcc------cCccCCEE
Confidence 9999999999999998885556799999999985 44444 34567889999998 466887632 24677888
Q ss_pred eeecCeeEEEecCCCCcccccCC
Q 044535 952 TFFNSSVSICFSGNEIPNWFSDC 974 (1085)
Q Consensus 952 ~~~~~~~~~~~~g~~iP~wf~~~ 974 (1085)
++.++.+. +..|.+|..+
T Consensus 479 ~Ls~N~l~-----~~~~~~~~~l 496 (549)
T 2z81_A 479 KISRNQLK-----SVPDGIFDRL 496 (549)
T ss_dssp ECCSSCCC-----CCCTTGGGGC
T ss_pred ecCCCccC-----CcCHHHHhcC
Confidence 88877655 3445666543
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=327.42 Aligned_cols=400 Identities=20% Similarity=0.185 Sum_probs=213.8
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceee-cccccccCCceeEEEeeCCCCCCC-CCCC-CCCC
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHL-CQGLEILSNELRYLHWHRYPLKSL-PSNF-NPEN 593 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~ 593 (1085)
.+|++.+....+.+..|.++++|++|++++|... ..+ +..+..+ ++|++|++++|.+..+ |..| ++++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcc
Confidence 4567777777777888889999999999887431 233 3334333 4789999998888876 5555 7888
Q ss_pred ceEEecCCCCchh-hhHh--hhhccccceecccCCCCCCCCC--CCCCCCcccEEeccCcccccccCCCC-----CCccE
Q 044535 594 LVELDMHHSNLEH-LWEE--MQHALNLRRIDLSYSLHLNETP--DLSSARNLEIMVLDGCYSLIKFPKTS-----WSITE 663 (1085)
Q Consensus 594 L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~Ls~~~~~~~~~--~l~~l~~L~~L~L~~~~~l~~~~~~~-----~~L~~ 663 (1085)
|++|+|++|.+.. ++.. +..+++|++|+|++|.+....+ .++++++|++|++++|......+..+ .+|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999888874 4444 7888889999999888776654 37888889999888876443333222 35555
Q ss_pred EecCCCcccc-ccccccCCCc------ccEEEccCCCCCCccCCcccC--------------------------------
Q 044535 664 LDLGETAIEE-VPPAIESLGK------LVVLRLDNCRRLKNLPSSICN-------------------------------- 704 (1085)
Q Consensus 664 L~Ls~~~i~~-lp~~i~~l~~------L~~L~L~~~~~~~~lp~~l~~-------------------------------- 704 (1085)
|++++|.+.. .|..++.+.+ |++|++++|......|..+..
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 6666555543 2333333333 555555555333222222111
Q ss_pred ------CCCccEEEecccCCCccCCCCC---CCccccCccccccccc-CcccccCCCCCEEEccCCcccccccccccCCC
Q 044535 705 ------LTSLTELALHGCSNITKFPDIS---GDMKYLSLSETAIEEL-PSSVECLTELTVLRLQKCKRLKRVSSSICKLK 774 (1085)
Q Consensus 705 ------l~~L~~L~L~~~~~~~~~p~~~---~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~ 774 (1085)
.++|+.|++++|......|..+ .+|+.|++++|.+..+ |..+..+++|+.|+|++|.+.+..|..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 1334444444433322222221 2333334444444333 22334444444444444443333333444444
Q ss_pred CCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc-------------------ccCccccCCCCCCEEEccCCCchh
Q 044535 775 SLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK-------------------ELPSSIDHLPQLSLLSLENCKNIL 835 (1085)
Q Consensus 775 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-------------------~lp~~l~~l~~L~~L~L~~~~~l~ 835 (1085)
+|+.|++++|......+..+..+++|+.|++++|.++ .+|.. ..+++.|++++|.
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~--- 412 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENR--- 412 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCC---
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccc---ccccceeecccCc---
Confidence 4444444444332222233344444444444444433 33221 1223333333333
Q ss_pred hhccCCch-hhhcCCCCccEEecCCCCCCCCCc--ccCCCCCCCEEECCCCCCCcCC--------CCCCCCCCEeecccc
Q 044535 836 VFLTNLPL-ALLSGLCSLTELHLNDCNLLELPS--ALTCLSSLEILGLSGNIFESLN--------LKPFSCLTHLNVSYC 904 (1085)
Q Consensus 836 ~~l~~l~~-~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~l~~l~--------~~~l~~L~~L~l~~c 904 (1085)
+..++. ..+..+++|+.|+|++|+++.++. .+..+++|+.|++++|.++..+ +..+++|+.|+|++|
T Consensus 413 --l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 413 --LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp --CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred --cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 222221 123456667777777766665432 2444566666666666655321 445566666666665
Q ss_pred ccccccCC--CCCCCCCCeEEEeCCCCCCcccC
Q 044535 905 KRLQSLQE--FPSPLRLVNLQAHECIYLETVPA 935 (1085)
Q Consensus 905 ~~L~~lp~--l~~~~~L~~L~i~~c~~L~~~~~ 935 (1085)
. ++.+|. +....+|+.|++++| .+..+|.
T Consensus 491 ~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~ 521 (844)
T 3j0a_A 491 Y-LNSLPPGVFSHLTALRGLSLNSN-RLTVLSH 521 (844)
T ss_dssp H-HTTCCTTSSSSCCSCSEEEEESC-CCSSCCC
T ss_pred c-ccccChhHccchhhhheeECCCC-CCCccCh
Confidence 3 333332 455566667777666 3444444
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4e-31 Score=318.67 Aligned_cols=414 Identities=16% Similarity=0.170 Sum_probs=301.0
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceee-cccccccCCceeEEEeeCCCCCCCCCCCCCCCce
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHL-CQGLEILSNELRYLHWHRYPLKSLPSNFNPENLV 595 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~-~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~ 595 (1085)
.+|++.+....+.+..|.++++|++|++++|.+ ..+ +..+..+ .+|++|++++|.++.+|.. .+++|+
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l-~~L~~L~Ls~N~l~~lp~~-~l~~L~ 93 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRI---------QYLDISVFKFN-QELEYLDLSHNKLVKISCH-PTVNLK 93 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC---------CEEEGGGGTTC-TTCCEEECCSSCCCEEECC-CCCCCS
T ss_pred EEECCCCcccccChhhccccccccEEecCCCcc---------CCcChHHhhcc-cCCCEEecCCCceeecCcc-ccCCcc
Confidence 456777777777778899999999999999876 233 3344444 4899999999999999988 899999
Q ss_pred EEecCCCCchh--hhHhhhhccccceecccCCCCCCCCCCCCCCCcc--cEEeccCccc--ccccCCCCCCcc----EEe
Q 044535 596 ELDMHHSNLEH--LWEEMQHALNLRRIDLSYSLHLNETPDLSSARNL--EIMVLDGCYS--LIKFPKTSWSIT----ELD 665 (1085)
Q Consensus 596 ~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L--~~L~L~~~~~--l~~~~~~~~~L~----~L~ 665 (1085)
+|+|++|.+.. +|..++.+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..++ .++
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~ 171 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEE
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEE
Confidence 99999999986 56889999999999999987654 346677777 9999999877 566677666644 567
Q ss_pred cCCCcccc-cc-ccccCCCcccEEEccCCC-------CCCccCCcccCCCCccEEEecccCCCccCCC------CCCCcc
Q 044535 666 LGETAIEE-VP-PAIESLGKLVVLRLDNCR-------RLKNLPSSICNLTSLTELALHGCSNITKFPD------ISGDMK 730 (1085)
Q Consensus 666 Ls~~~i~~-lp-~~i~~l~~L~~L~L~~~~-------~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~------~~~~L~ 730 (1085)
+++|.+.. ++ ..+..+++|+.|++++|. ..+.+| .++.+++|+.|++++|......+. ...+|+
T Consensus 172 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~ 250 (520)
T 2z7x_B 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250 (520)
T ss_dssp CCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS
T ss_pred eccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCccc
Confidence 77777653 33 346788999999998875 333444 477888899998887654332111 123788
Q ss_pred ccCccccccc-ccCccc-----ccCCCCCEEEccCCccccccc-ccccCC---CCCcEEEeeCCCCCCCcchhhcCCCCc
Q 044535 731 YLSLSETAIE-ELPSSV-----ECLTELTVLRLQKCKRLKRVS-SSICKL---KSLEILYLFGCSKLEGLPEILESMERL 800 (1085)
Q Consensus 731 ~L~L~~~~i~-~lp~~l-----~~l~~L~~L~L~~~~~~~~l~-~~l~~l---~~L~~L~L~~~~~l~~lp~~l~~l~~L 800 (1085)
.|++++|.+. .+|..+ +.+++|+.+++++|.. .+| ..+..+ .+|+.|++++|...... ....+++|
T Consensus 251 ~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L 326 (520)
T 2z7x_B 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPF 326 (520)
T ss_dssp EEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCC
T ss_pred EEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcc
Confidence 8888888887 788877 7888888888888876 455 333333 56888888887654322 12567888
Q ss_pred cEEEccCCCCcc-cCccccCCCCCCEEEccCCCchhhhccCCch--hhhcCCCCccEEecCCCCCCC-CCcc-cCCCCCC
Q 044535 801 ETLYLAGTPIKE-LPSSIDHLPQLSLLSLENCKNILVFLTNLPL--ALLSGLCSLTELHLNDCNLLE-LPSA-LTCLSSL 875 (1085)
Q Consensus 801 ~~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~--~~~~~l~~L~~L~Ls~n~l~~-lp~~-l~~l~~L 875 (1085)
++|++++|.++. +|..+..+++|++|+|++|. ++.++. ..+..+++|+.|+|++|.+.. +|.. +..+++|
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-----LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-----CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCc-----cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 888888888875 67778888888888888887 554433 357788888888888888886 7764 6778888
Q ss_pred CEEECCCCCCCcCCCCCC-CCCCEeeccccccccccCC-CCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCcccee
Q 044535 876 EILGLSGNIFESLNLKPF-SCLTHLNVSYCKRLQSLQE-FPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTF 953 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~~~~l-~~L~~L~l~~c~~L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~ 953 (1085)
+.|++++|.+++.....+ ++|+.|++++|. ++.+|. +....+|+.|++++| .+..+|.... .....++.+.+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~----~~l~~L~~L~l 475 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDGIF----DRLTSLQKIWL 475 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTT----TTCTTCCEEEC
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCC-cCCccCHHHh----ccCCcccEEEC
Confidence 888888888865433333 688888888874 557764 556677788888887 4556766411 12345666666
Q ss_pred ecCeeE
Q 044535 954 FNSSVS 959 (1085)
Q Consensus 954 ~~~~~~ 959 (1085)
.++.+.
T Consensus 476 ~~N~~~ 481 (520)
T 2z7x_B 476 HTNPWD 481 (520)
T ss_dssp CSSCBC
T ss_pred cCCCCc
Confidence 665544
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.5e-30 Score=313.42 Aligned_cols=399 Identities=21% Similarity=0.206 Sum_probs=316.1
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCC-C-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSN-F-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 594 (1085)
.+|++.+....+.+.+|.++++|++|++.+|.+ ..++........+|++|++++|.+..+|.. + .+++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcC---------CccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 467777777778888999999999999999876 344433333345899999999999998873 4 89999
Q ss_pred eEEecCCCCchh--hhHhhhhccccceecccCCCCCCCCC-CCCCCCcc----cEEeccCcccccccCCCCC--CccEEe
Q 044535 595 VELDMHHSNLEH--LWEEMQHALNLRRIDLSYSLHLNETP-DLSSARNL----EIMVLDGCYSLIKFPKTSW--SITELD 665 (1085)
Q Consensus 595 ~~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L----~~L~L~~~~~l~~~~~~~~--~L~~L~ 665 (1085)
++|++++|.+.. +|..+.++++|++|++++|.+....+ .+..+++| +.|++++|......+..+. +|++|+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 999999999985 68889999999999999998766554 36666666 7888888764433333222 466666
Q ss_pred cCCCc----------------------------------------------------------c-ccccccccCCCcccE
Q 044535 666 LGETA----------------------------------------------------------I-EEVPPAIESLGKLVV 686 (1085)
Q Consensus 666 Ls~~~----------------------------------------------------------i-~~lp~~i~~l~~L~~ 686 (1085)
+++|. + ..+|..+..+++|++
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 66541 1 123455777899999
Q ss_pred EEccCCCCCCccCCcccCCCCccEEEecccCCCccCC-CCCCCccccCcccccccccCcccccCCCCCEEEccCCccccc
Q 044535 687 LRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFP-DISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKR 765 (1085)
Q Consensus 687 L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~ 765 (1085)
|++++|. +..+|..+..+ +|++|++++|... .+| ..+.+|+.|++++|.+...... ..+++|+.|++++|.....
T Consensus 287 L~l~~~~-l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 287 FSLVSVT-IERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp EEEESCE-ECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEE
T ss_pred EEecCcc-chhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCcc
Confidence 9999975 45788888888 9999999998765 454 4567899999999988755433 7899999999999987654
Q ss_pred c--cccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc--cccCCCCCCEEEccCCCchhhhccCC
Q 044535 766 V--SSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS--SIDHLPQLSLLSLENCKNILVFLTNL 841 (1085)
Q Consensus 766 l--~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~--~l~~l~~L~~L~L~~~~~l~~~l~~l 841 (1085)
. +..+..+++|++|++++|.... ++..+..+++|+.|++++|.+...+. .+..+++|+.|++++|. +...
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~ 436 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-----TRVA 436 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-----CEEC
T ss_pred ccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-----cccc
Confidence 3 6778899999999999986554 44448899999999999999886643 68899999999999998 6666
Q ss_pred chhhhcCCCCccEEecCCCCCC--CCCcccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccccccccCC--CC
Q 044535 842 PLALLSGLCSLTELHLNDCNLL--ELPSALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQE--FP 914 (1085)
Q Consensus 842 ~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp~--l~ 914 (1085)
++..+.++++|+.|+|++|.+. .+|..+..+++|+.|++++|.++.++ +..+++|+.|++++|+ ++.+|. +.
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 515 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFD 515 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhh
Confidence 6667889999999999999997 48999999999999999999999883 7788999999999985 555542 66
Q ss_pred CCCCCCeEEEeCCCCCCcccC
Q 044535 915 SPLRLVNLQAHECIYLETVPA 935 (1085)
Q Consensus 915 ~~~~L~~L~i~~c~~L~~~~~ 935 (1085)
.+.+|+.|++.+|+--...|.
T Consensus 516 ~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 516 RLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TCTTCCEEECCSSCBCCCTTT
T ss_pred cccCCcEEEecCCcccCCCcc
Confidence 778899999999986665554
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=4.6e-29 Score=317.25 Aligned_cols=349 Identities=19% Similarity=0.186 Sum_probs=259.7
Q ss_pred ccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCC-CCCC-CCCC-CCCCceEEecCCCCchhh-hHh
Q 044535 535 GMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYP-LKSL-PSNF-NPENLVELDMHHSNLEHL-WEE 610 (1085)
Q Consensus 535 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~l~~L~~L~L~~~~i~~l-~~~ 610 (1085)
-.++|+.|++++|.+. ...+..+..+ .+|++|++++|. +..+ |..| ++++|++|+|++|.+..+ |..
T Consensus 22 lp~~l~~LdLs~N~i~--------~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR--------TVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCC--------EECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcCC--------ccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 3578999999998762 1223344443 589999999994 5556 5556 899999999999999976 778
Q ss_pred hhhccccceecccCCCCCCCCCC---CCCCCcccEEeccCcccccccC----CCCCCccEEecCCCccccc-cccccCC-
Q 044535 611 MQHALNLRRIDLSYSLHLNETPD---LSSARNLEIMVLDGCYSLIKFP----KTSWSITELDLGETAIEEV-PPAIESL- 681 (1085)
Q Consensus 611 ~~~l~~L~~L~Ls~~~~~~~~~~---l~~l~~L~~L~L~~~~~l~~~~----~~~~~L~~L~Ls~~~i~~l-p~~i~~l- 681 (1085)
+..+++|++|+|++|.+....+. +..+++|++|++++|......+ ..+.+|++|++++|.+..+ +..+..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 99999999999999988775553 8999999999999997654333 3567999999999998764 4567666
Q ss_pred -CcccEEEccCCCCCCccCCcccCCCC------ccEEEecccCCCccCCCC-----------------------------
Q 044535 682 -GKLVVLRLDNCRRLKNLPSSICNLTS------LTELALHGCSNITKFPDI----------------------------- 725 (1085)
Q Consensus 682 -~~L~~L~L~~~~~~~~lp~~l~~l~~------L~~L~L~~~~~~~~~p~~----------------------------- 725 (1085)
++|+.|++++|......|..++.+++ |++|++++|......+..
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 89999999999888777777766665 999999998543332211
Q ss_pred ------------CCCccccCccccccccc-CcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch
Q 044535 726 ------------SGDMKYLSLSETAIEEL-PSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE 792 (1085)
Q Consensus 726 ------------~~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~ 792 (1085)
..+++.|++++|.+..+ |..+..+++|+.|+|++|.+.+..|..+..+++|++|++++|......|.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 13577788888888765 45678888999999999888877788888889999999998877776778
Q ss_pred hhcCCCCccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCC
Q 044535 793 ILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTC 871 (1085)
Q Consensus 793 ~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 871 (1085)
.+..+++|+.|++++|.+..++. .+..+++|+.|+|++|. ++.++ .+++|+.|++++|+++.+|..
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----l~~i~-----~~~~L~~L~l~~N~l~~l~~~--- 399 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-----LTTIH-----FIPSIPDIFLSGNKLVTLPKI--- 399 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-----SCCCS-----SCCSCSEEEEESCCCCCCCCC---
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-----CCccc-----CCCCcchhccCCCCccccccc---
Confidence 88888899999999998887765 57788899999998887 55443 266777777777777766543
Q ss_pred CCCCCEEECCCCCCCcCC----CCCCCCCCEeeccccc
Q 044535 872 LSSLEILGLSGNIFESLN----LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 872 l~~L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~ 905 (1085)
..+++.|++++|.++.++ +..+++|+.|+|++|.
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 234444555555444443 2344555555555443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7e-29 Score=294.18 Aligned_cols=339 Identities=19% Similarity=0.274 Sum_probs=183.7
Q ss_pred ccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhc
Q 044535 535 GMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHA 614 (1085)
Q Consensus 535 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l 614 (1085)
.+++|+.|.+.++.+ ..++ ++..+ ++|++|++++|.+..+|....+++|++|++++|.+..++. +..+
T Consensus 44 ~l~~l~~L~l~~~~i---------~~l~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI---------KSID-GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHTCCEEECCSSCC---------CCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred HhccccEEecCCCCC---------ccCc-chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCC
Confidence 456777777776654 1222 23333 4678888888777777764477778888888777777665 7777
Q ss_pred cccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccC--CCCCCccEEecCCCccccccccccCCCcccEEEccCC
Q 044535 615 LNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFP--KTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNC 692 (1085)
Q Consensus 615 ~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~ 692 (1085)
++|++|++++|.+... +.+..+++|++|++++|... .++ ..+.+|++|+++ +.+..++. +.++++|++|++++|
T Consensus 112 ~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n 187 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSN 187 (466)
T ss_dssp TTCCEEECCSSCCCCC-GGGTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSS
T ss_pred CCCCEEECCCCCCCCC-hHHcCCCCCCEEECCCCccC-CChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCC
Confidence 7788888877755443 33777777777777776532 121 234456666664 33333332 556666666666665
Q ss_pred CCCCccCCcccCCCCccEEEecccCCCccCC-CCCCCccccCcccccccccCcccccCCCCCEEEccCCccccccccccc
Q 044535 693 RRLKNLPSSICNLTSLTELALHGCSNITKFP-DISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSIC 771 (1085)
Q Consensus 693 ~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~ 771 (1085)
. +..++. +..+++|++|++++|......| ..+.+|+.|++++|.+..++ .+..+++|+.|++++|...+..+ +.
T Consensus 188 ~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 188 K-VSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp C-CCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred c-CCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hh
Confidence 4 233332 5556666666666654332222 12334555555555555443 34455555555555554433322 44
Q ss_pred CCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCC
Q 044535 772 KLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCS 851 (1085)
Q Consensus 772 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~ 851 (1085)
.+++|+.|++++|..... +. +..+++|+.|++++|.++.++. +..+++|+.|+|++|. +..+++ +..+++
T Consensus 263 ~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~-----l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN-----ISDISP--VSSLTK 332 (466)
T ss_dssp TCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC-----CSCCGG--GGGCTT
T ss_pred cCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc-----CCCchh--hccCcc
Confidence 455555555555433322 22 4445555555555555554443 4455555555555554 333333 444555
Q ss_pred ccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccccc
Q 044535 852 LTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 852 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~c~ 905 (1085)
|+.|++++|.++.++ .+..+++|+.|++++|++++.+ +..+++|+.|++++|+
T Consensus 333 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 333 LQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEE
T ss_pred CCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCc
Confidence 555555555555442 3445555555555555554443 4455555555555543
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=5.9e-29 Score=294.46 Aligned_cols=338 Identities=19% Similarity=0.229 Sum_probs=161.5
Q ss_pred CceeEEEeeCCCCCCC-CCCC-CCCCceEEecCCCCch-hh-hHhhhhccccceecccCCCCCCCCC-CCCCCCcccEEe
Q 044535 570 NELRYLHWHRYPLKSL-PSNF-NPENLVELDMHHSNLE-HL-WEEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMV 644 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~ 644 (1085)
++|++|++++|.+..+ |..+ .+++|++|++++|.+. .+ +..+..+++|++|+|++|.+....| .+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4455555555555544 2223 4555555555555543 22 2334555555555555555444433 255555555555
Q ss_pred ccCcccccccCCCCCCccEEecCCCcccc-cccc--ccCCCcccEEEccCCCCCCccCCc-ccCCCCccEEEecccCCCc
Q 044535 645 LDGCYSLIKFPKTSWSITELDLGETAIEE-VPPA--IESLGKLVVLRLDNCRRLKNLPSS-ICNLTSLTELALHGCSNIT 720 (1085)
Q Consensus 645 L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~-lp~~--i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~ 720 (1085)
+++| .+.. +|.. ++.+++|++|++++|......|.. +.++++|++|++++|....
T Consensus 110 L~~n---------------------~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 110 LTQC---------------------NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTS---------------------CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CCCC---------------------CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 5555 4432 2222 444444555555444433333332 3444445555554444333
Q ss_pred cCCCCCC-----CccccCcccccccccCcc---------cccCCCCCEEEccCCcccccccccccC---CCCCcEEEeeC
Q 044535 721 KFPDISG-----DMKYLSLSETAIEELPSS---------VECLTELTVLRLQKCKRLKRVSSSICK---LKSLEILYLFG 783 (1085)
Q Consensus 721 ~~p~~~~-----~L~~L~L~~~~i~~lp~~---------l~~l~~L~~L~L~~~~~~~~l~~~l~~---l~~L~~L~L~~ 783 (1085)
..|..+. +++.|+++++.+..++.. +..+++|+.|++++|.+.+..|..+.. .++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 3333221 233444444444443321 223455556666655555544443322 24555555555
Q ss_pred CCCCCCc----------chhhc--CCCCccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCC
Q 044535 784 CSKLEGL----------PEILE--SMERLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLC 850 (1085)
Q Consensus 784 ~~~l~~l----------p~~l~--~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~ 850 (1085)
|...... +..+. ..++|+.|++++|.+..+ |..+..+++|+.|+|++|. +..+++..+..++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~ 323 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-----INKIDDNAFWGLT 323 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCT
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-----ccccChhHhcCcc
Confidence 4322110 00111 124555666666555532 3445555566666666555 4444444455555
Q ss_pred CccEEecCCCCCCCC-CcccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccccccccCC--CCCCCCCCeEEE
Q 044535 851 SLTELHLNDCNLLEL-PSALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQE--FPSPLRLVNLQA 924 (1085)
Q Consensus 851 ~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp~--l~~~~~L~~L~i 924 (1085)
+|+.|+|++|.+..+ |..+..+++|+.|+|++|.++.++ +..+++|+.|++++|. ++.+|. +..+.+|+.|++
T Consensus 324 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 324 HLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp TCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred cCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEc
Confidence 666666666655543 344555556666666666555542 4555556666665543 334442 334455556666
Q ss_pred eCCCCCCccc
Q 044535 925 HECIYLETVP 934 (1085)
Q Consensus 925 ~~c~~L~~~~ 934 (1085)
++|+--...|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 6555444433
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=295.42 Aligned_cols=370 Identities=16% Similarity=0.154 Sum_probs=247.0
Q ss_pred CceeEEEeeCCCCCCCCC-CC-CCCCceEEecCCCCchhh-hHhhhhccccceecccCCCCCCCCCCCCCCCcccEEecc
Q 044535 570 NELRYLHWHRYPLKSLPS-NF-NPENLVELDMHHSNLEHL-WEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLD 646 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~ 646 (1085)
.+|++|++++|.+..++. .+ .+++|++|+|++|.+..+ |..+..+++|++|+|++|.+. .+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEecc
Confidence 567777777777766653 23 667777777777777655 556677777777777777655 34433 67777777777
Q ss_pred Cccccc-ccCC---CCCCccEEecCCCccccccccccCCCcc--cEEEccCCCC--CCccCCcccCCC-CccEEEecccC
Q 044535 647 GCYSLI-KFPK---TSWSITELDLGETAIEEVPPAIESLGKL--VVLRLDNCRR--LKNLPSSICNLT-SLTELALHGCS 717 (1085)
Q Consensus 647 ~~~~l~-~~~~---~~~~L~~L~Ls~~~i~~lp~~i~~l~~L--~~L~L~~~~~--~~~lp~~l~~l~-~L~~L~L~~~~ 717 (1085)
+|.... .+|. .+.+|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+. ....+++++|.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 765432 2332 34466777777776654 335555666 7777776655 444454444332 11122333333
Q ss_pred CCccCCC----CCCCccccCccccc-------ccccCccccc---------------------------CCCCCEEEccC
Q 044535 718 NITKFPD----ISGDMKYLSLSETA-------IEELPSSVEC---------------------------LTELTVLRLQK 759 (1085)
Q Consensus 718 ~~~~~p~----~~~~L~~L~L~~~~-------i~~lp~~l~~---------------------------l~~L~~L~L~~ 759 (1085)
....++. .+.+|+.|++++|. +......++. +++|+.|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 3322222 12344445555543 1111112222 34677777777
Q ss_pred Ccccccccccc-----cCCCCCcEEEeeCCCCCCCcc-hhhcCC---CCccEEEccCCCCcccCccccCCCCCCEEEccC
Q 044535 760 CKRLKRVSSSI-----CKLKSLEILYLFGCSKLEGLP-EILESM---ERLETLYLAGTPIKELPSSIDHLPQLSLLSLEN 830 (1085)
Q Consensus 760 ~~~~~~l~~~l-----~~l~~L~~L~L~~~~~l~~lp-~~l~~l---~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~ 830 (1085)
|...+.+|..+ ..+++|+.+++++|.. .+| ..+..+ .+|+.|++++|.+..++. ...+++|++|++++
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~ 333 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSN 333 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCS
T ss_pred ccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeEC
Confidence 77777777777 7888888888888766 555 444443 678899999988876542 26889999999999
Q ss_pred CCchhhhccCCchhhhcCCCCccEEecCCCCCCC---CCcccCCCCCCCEEECCCCCCCc-CC---CCCCCCCCEeeccc
Q 044535 831 CKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE---LPSALTCLSSLEILGLSGNIFES-LN---LKPFSCLTHLNVSY 903 (1085)
Q Consensus 831 ~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~n~l~~-l~---~~~l~~L~~L~l~~ 903 (1085)
|. ++...+..+..+++|+.|+|++|++.. +|..+..+++|+.|++++|.++. ++ +..+++|+.|++++
T Consensus 334 n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 334 NL-----LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp SC-----CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred Cc-----cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 98 666444568899999999999999995 45678999999999999999998 76 67789999999999
Q ss_pred cccccccCC-CCCCCCCCeEEEeCCCCCCcccCCCccccccccCCCccceeecCeeE
Q 044535 904 CKRLQSLQE-FPSPLRLVNLQAHECIYLETVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 904 c~~L~~lp~-l~~~~~L~~L~i~~c~~L~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
|.....+|. ++ .+|+.|++++|. +..+|.... ....++.+.+.++.+.
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~-----~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVV-----KLEALQELNVASNQLK 457 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGG-----GCTTCCEEECCSSCCC
T ss_pred CCCCcchhhhhc--ccCCEEECCCCc-ccccchhhh-----cCCCCCEEECCCCcCC
Confidence 986666653 33 567799999984 667776432 4567888888887665
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=6.6e-28 Score=285.84 Aligned_cols=338 Identities=20% Similarity=0.271 Sum_probs=285.6
Q ss_pred CceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcc
Q 044535 570 NELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCY 649 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~ 649 (1085)
.+++.|++.++.+..+|....+++|++|++++|.+..++. +..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 3789999999999999975589999999999999998887 8999999999999998776665 9999999999999985
Q ss_pred cccccC--CCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCC--C
Q 044535 650 SLIKFP--KTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPD--I 725 (1085)
Q Consensus 650 ~l~~~~--~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~--~ 725 (1085)
.. .++ ..+.+|++|++++|.+..++. ++.+++|++|++++ ....++. +.++++|++|++++|.. ..++. .
T Consensus 124 l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~l~~ 197 (466)
T 1o6v_A 124 IT-DIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP-LANLTTLERLDISSNKV-SDISVLAK 197 (466)
T ss_dssp CC-CCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGGG
T ss_pred CC-CChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh-hccCCCCCEEECcCCcC-CCChhhcc
Confidence 33 333 456789999999999998874 88999999999974 2334444 88899999999999863 33332 3
Q ss_pred CCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEc
Q 044535 726 SGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYL 805 (1085)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 805 (1085)
..+|+.|++++|.+..++. ++.+++|+.|++++|.... + ..+..+++|+.|++++|......+ +..+++|+.|++
T Consensus 198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 4588999999999988766 7889999999999998654 3 357889999999999987665444 888999999999
Q ss_pred cCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCC
Q 044535 806 AGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIF 885 (1085)
Q Consensus 806 ~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 885 (1085)
++|.++.++. +..+++|+.|++++|. +..+++ +..+++|+.|+|++|.++.++. +..+++|+.|++++|.+
T Consensus 273 ~~n~l~~~~~-~~~l~~L~~L~L~~n~-----l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 273 GANQISNISP-LAGLTALTNLELNENQ-----LEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEECCSSC-----CSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCCccCcccc-ccCCCccCeEEcCCCc-----ccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCcc
Confidence 9999998876 8899999999999998 777765 7899999999999999998766 78999999999999999
Q ss_pred CcCC-CCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCCCCC
Q 044535 886 ESLN-LKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYL 930 (1085)
Q Consensus 886 ~~l~-~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~L 930 (1085)
++++ +..+++|+.|++++|+.....| +..+.+|+.|++.+|+-.
T Consensus 344 ~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 344 SDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEE
T ss_pred CCchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCccc
Confidence 9987 8899999999999987544444 777888999999988644
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=3.4e-28 Score=285.65 Aligned_cols=326 Identities=24% Similarity=0.246 Sum_probs=185.6
Q ss_pred ceeEEEeeCCCCCCCCCCC-CCCCceEEecCCCCch-hhhHhhhhcccc-------------ceecccCCCCCCCCCCCC
Q 044535 571 ELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLE-HLWEEMQHALNL-------------RRIDLSYSLHLNETPDLS 635 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L-------------~~L~Ls~~~~~~~~~~l~ 635 (1085)
+|++|.++++.+..+|..+ ++++|++|++++|.+. .+|..++.+.+| ++|++++|.+.. +|.+
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~- 89 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC-
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC-
Confidence 5667777777777777666 6777777777777766 566666655543 777777775433 3332
Q ss_pred CCCcccEEeccCcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecc
Q 044535 636 SARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHG 715 (1085)
Q Consensus 636 ~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~ 715 (1085)
.++|++|++++|... .+|....+|++|++++|.+..+|... ++|++|++++|... .+| .++++++|++|++++
T Consensus 90 -~~~L~~L~l~~n~l~-~lp~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 -PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp -CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCS
T ss_pred -cCCCCEEEccCCcCC-ccccccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCC
Confidence 357777777766433 36666677777777777777665422 57777777776443 466 377777777777777
Q ss_pred cCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhc
Q 044535 716 CSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILE 795 (1085)
Q Consensus 716 ~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~ 795 (1085)
|. +..+|....+|+.|++++|.+..+| .++.+++|+.|++++|...+ +|.. .++|++|++++|... .+|. +.
T Consensus 163 N~-l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~ 234 (454)
T 1jl5_A 163 NS-LKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQ 234 (454)
T ss_dssp SC-CSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CT
T ss_pred Cc-CcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cC
Confidence 64 3446666677777777777777776 47777777777777776543 3332 246777777776444 5553 66
Q ss_pred CCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCccc------
Q 044535 796 SMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSAL------ 869 (1085)
Q Consensus 796 ~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l------ 869 (1085)
.+++|++|++++|.++.+|.. +++|+.|++++|. +..+|. .+++|+.|++++|.++.+|...
T Consensus 235 ~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~-----l~~l~~----~~~~L~~L~ls~N~l~~l~~~~~~L~~L 302 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY-----LTDLPE----LPQSLTFLDVSENIFSGLSELPPNLYYL 302 (454)
T ss_dssp TCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC-----CSCCCC----CCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccccc---ccccCEEECCCCc-----ccccCc----ccCcCCEEECcCCccCcccCcCCcCCEE
Confidence 677777777777777766642 3566777777666 444443 2355666666666655443211
Q ss_pred ----------CCC-CCCCEEECCCCCCCcCCCCCCCCCCEeeccccccccccCCCCCCCCCCeEEEeCCCC
Q 044535 870 ----------TCL-SSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIY 929 (1085)
Q Consensus 870 ----------~~l-~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~ 929 (1085)
..+ ++|+.|++++|++++++. .+++|+.|++++| .++.+|. .+.+|+.|++++|.-
T Consensus 303 ~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~-~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 303 NASSNEIRSLCDLPPSLEELNVSNNKLIELPA-LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPL 369 (454)
T ss_dssp ECCSSCCSEECCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCC
T ss_pred ECcCCcCCcccCCcCcCCEEECCCCccccccc-cCCcCCEEECCCC-ccccccc--hhhhccEEECCCCCC
Confidence 011 355555555555555442 2455556666554 2444554 233445566655543
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=2.1e-28 Score=297.52 Aligned_cols=392 Identities=17% Similarity=0.149 Sum_probs=278.7
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceE
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVE 596 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 596 (1085)
.+|++.+....+.+..|.++++|++|++++|.+ ..+..+......+|++|++++|.++.+|.. .+++|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~ 125 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRI---------RSLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRH 125 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC---------CEECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCC---------CcCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCE
Confidence 457777777777778888999999999988866 333333222335789999999998888887 8889999
Q ss_pred EecCCCCchhhh--HhhhhccccceecccCCCCCCCCCCCCCCCcc--cEEeccCccc--ccccCCCCCCcc----EEec
Q 044535 597 LDMHHSNLEHLW--EEMQHALNLRRIDLSYSLHLNETPDLSSARNL--EIMVLDGCYS--LIKFPKTSWSIT----ELDL 666 (1085)
Q Consensus 597 L~L~~~~i~~l~--~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L--~~L~L~~~~~--l~~~~~~~~~L~----~L~L 666 (1085)
|++++|.+..++ ..+.++++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..+..+. .+++
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999888764 678889999999999887654 245555555 8899888865 444444433322 3444
Q ss_pred CCCcccc-cc-ccccCCCcccEEEccCCC----------------------------CCC----ccCCcccCCCCccEEE
Q 044535 667 GETAIEE-VP-PAIESLGKLVVLRLDNCR----------------------------RLK----NLPSSICNLTSLTELA 712 (1085)
Q Consensus 667 s~~~i~~-lp-~~i~~l~~L~~L~L~~~~----------------------------~~~----~lp~~l~~l~~L~~L~ 712 (1085)
++|.+.. ++ ..+..+++|+.|++++|. ... .++..+ ..++|++|+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~ 282 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLN 282 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEE
Confidence 5554432 11 123455666666666542 100 011111 134899999
Q ss_pred ecccCCCccCCCCC-----CCccccCccccccc--ccCc-cccc---CCCCCEEEccCCcccccccccccCCCCCcEEEe
Q 044535 713 LHGCSNITKFPDIS-----GDMKYLSLSETAIE--ELPS-SVEC---LTELTVLRLQKCKRLKRVSSSICKLKSLEILYL 781 (1085)
Q Consensus 713 L~~~~~~~~~p~~~-----~~L~~L~L~~~~i~--~lp~-~l~~---l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L 781 (1085)
+++|...+.+|..+ .+++.|.+.++... .+|. .+.. ..+|+.|++++|....... ...+++|++|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEEC
Confidence 99988777788766 66776655443332 4452 2222 3679999999987643221 257889999999
Q ss_pred eCCCCCCCcchhhcCCCCccEEEccCCCCcccC---ccccCCCCCCEEEccCCCchhhhccC-CchhhhcCCCCccEEec
Q 044535 782 FGCSKLEGLPEILESMERLETLYLAGTPIKELP---SSIDHLPQLSLLSLENCKNILVFLTN-LPLALLSGLCSLTELHL 857 (1085)
Q Consensus 782 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp---~~l~~l~~L~~L~L~~~~~l~~~l~~-l~~~~~~~l~~L~~L~L 857 (1085)
++|......|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|. ++. +|...+..+++|+.|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~~~~l~~L~~L~l 435 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-----LNSHAYDRTCAWAESILVLNL 435 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-----CBSCCSSCCCCCCTTCCEEEC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-----CCCccChhhhcCcccCCEEEC
Confidence 998888878888889999999999999988665 467889999999999998 665 77767888899999999
Q ss_pred CCCCCCC-CCcccCCCCCCCEEECCCCCCCcCC--CCCCCCCCEeeccccccccccCC--CCCCCCCCeEEEeCCCCCC
Q 044535 858 NDCNLLE-LPSALTCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVSYCKRLQSLQE--FPSPLRLVNLQAHECIYLE 931 (1085)
Q Consensus 858 s~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L~~lp~--l~~~~~L~~L~i~~c~~L~ 931 (1085)
++|.++. +|..+. ++|+.|++++|+++.+| +..+++|+.|++++|. ++.+|. +....+|+.|++++++--.
T Consensus 436 ~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 436 SSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 9999873 444443 68999999999999887 5688899999999875 567775 6677788899999887543
No 32
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=9.2e-28 Score=291.83 Aligned_cols=391 Identities=14% Similarity=0.128 Sum_probs=240.1
Q ss_pred ccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCC-CC-CCCCceEEecCCCCchhh-hHhhhhcc
Q 044535 539 LRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPS-NF-NPENLVELDMHHSNLEHL-WEEMQHAL 615 (1085)
Q Consensus 539 Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~ 615 (1085)
.++++++++.+ ..+|..+ +++|++|++++|.+..++. .+ .+++|++|+|++|.+..+ |..+..++
T Consensus 33 ~~~l~ls~~~L---------~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 100 (562)
T 3a79_B 33 ESMVDYSNRNL---------THVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ 100 (562)
T ss_dssp CCEEECTTSCC---------CSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT
T ss_pred CcEEEcCCCCC---------ccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC
Confidence 36666666544 2233322 2467777777777766663 33 667777777777777655 44566677
Q ss_pred ccceecccCCCCCCCCCCCCCCCcccEEeccCccccc-ccC---CCCCCccEEecCCCccccccccccCCCcc--cEEEc
Q 044535 616 NLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLI-KFP---KTSWSITELDLGETAIEEVPPAIESLGKL--VVLRL 689 (1085)
Q Consensus 616 ~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~-~~~---~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L--~~L~L 689 (1085)
+|++|++++|.+. .+|.. .+++|++|++++|.... ..| ..+.+|++|++++|.+... .+..+++| ++|++
T Consensus 101 ~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L 176 (562)
T 3a79_B 101 DLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILL 176 (562)
T ss_dssp TCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEE
T ss_pred CCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEe
Confidence 7777777776654 34433 66777777777665332 112 2334666777776666542 23444444 66666
Q ss_pred cCCCC--CCccCCcccC--------------------------CCCccEEEecccCCC-ccCC------CCCCCccccCc
Q 044535 690 DNCRR--LKNLPSSICN--------------------------LTSLTELALHGCSNI-TKFP------DISGDMKYLSL 734 (1085)
Q Consensus 690 ~~~~~--~~~lp~~l~~--------------------------l~~L~~L~L~~~~~~-~~~p------~~~~~L~~L~L 734 (1085)
++|.. ....|..+.. +++|+.|++++|... ..++ ....+++.|++
T Consensus 177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 66654 3333433332 234444444443100 0000 00001111111
Q ss_pred cccc-----ccccCcccccCCCCCEEEccCCcccccccccc-----cCC--------------------------CCCcE
Q 044535 735 SETA-----IEELPSSVECLTELTVLRLQKCKRLKRVSSSI-----CKL--------------------------KSLEI 778 (1085)
Q Consensus 735 ~~~~-----i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l-----~~l--------------------------~~L~~ 778 (1085)
.++. +..++..+ ..++|+.|++++|...+.+|..+ .++ .+|+.
T Consensus 257 ~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSE
T ss_pred cCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceE
Confidence 1111 11111111 11245555555555444444433 222 34667
Q ss_pred EEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc-cCccccCCCCCCEEEccCCCchhhhccCCch--hhhcCCCCccEE
Q 044535 779 LYLFGCSKLEGLPEILESMERLETLYLAGTPIKE-LPSSIDHLPQLSLLSLENCKNILVFLTNLPL--ALLSGLCSLTEL 855 (1085)
Q Consensus 779 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~--~~~~~l~~L~~L 855 (1085)
|++++|...... ....+++|++|++++|.++. +|..+..+++|+.|++++|. ++.++. ..+..+++|+.|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-----LKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-----CCBTTHHHHTTTTCTTCCEE
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-----cCCcccchhhhcCCCCCCEE
Confidence 777766543221 12678999999999999996 78889999999999999998 776653 457899999999
Q ss_pred ecCCCCCCC-CCcc-cCCCCCCCEEECCCCCCCcCCCCCC-CCCCEeeccccccccccCC-CCCCCCCCeEEEeCCCCCC
Q 044535 856 HLNDCNLLE-LPSA-LTCLSSLEILGLSGNIFESLNLKPF-SCLTHLNVSYCKRLQSLQE-FPSPLRLVNLQAHECIYLE 931 (1085)
Q Consensus 856 ~Ls~n~l~~-lp~~-l~~l~~L~~L~L~~n~l~~l~~~~l-~~L~~L~l~~c~~L~~lp~-l~~~~~L~~L~i~~c~~L~ 931 (1085)
++++|.+.. +|.. +..+++|+.|++++|.+++.....+ ++|+.|++++| .++.+|. +....+|+.|++++|. +.
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~ 486 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LK 486 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CC
Confidence 999999997 8764 7889999999999999987655555 69999999998 5778874 6677889999999875 66
Q ss_pred cccCCCccccccccCCCccceeecCeeE
Q 044535 932 TVPASADVEFTVSWSSQQYFTFFNSSVS 959 (1085)
Q Consensus 932 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 959 (1085)
.+|.... .....++.+.+.++.+.
T Consensus 487 ~l~~~~~----~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 487 SVPDGVF----DRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCTTST----TTCTTCCCEECCSCCBC
T ss_pred CCCHHHH----hcCCCCCEEEecCCCcC
Confidence 7887521 13456777777776554
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=2.7e-27 Score=280.16 Aligned_cols=343 Identities=17% Similarity=0.132 Sum_probs=175.3
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCC-CCCC-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSL-PSNF-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~l~~L 594 (1085)
.+|++.+....+.+..|.++++|++|++.+|... ..++.......++|++|++++|.+..+ |..+ .+++|
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~--------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG--------LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT--------CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCccc--------ceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 3455555555566666777777777777666431 122222222234677777777776655 3444 66777
Q ss_pred eEEecCCCCchh-hhHh--hhhccccceecccCCCCCCCCCC--CCCCCcccEEeccCcccccccCCCC-----CCccEE
Q 044535 595 VELDMHHSNLEH-LWEE--MQHALNLRRIDLSYSLHLNETPD--LSSARNLEIMVLDGCYSLIKFPKTS-----WSITEL 664 (1085)
Q Consensus 595 ~~L~L~~~~i~~-l~~~--~~~l~~L~~L~Ls~~~~~~~~~~--l~~l~~L~~L~L~~~~~l~~~~~~~-----~~L~~L 664 (1085)
++|+|++|.+.. ++.. +..+++|++|++++|.+....|. +..+++|++|++++|......+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 777777777663 3333 66677777777777766655554 5667777777777665443333332 345566
Q ss_pred ecCCCcccccccc---------ccCCCcccEEEccCCCCCCccCCcccC---CCCccEEEecccCCCccCCCCCCCcccc
Q 044535 665 DLGETAIEEVPPA---------IESLGKLVVLRLDNCRRLKNLPSSICN---LTSLTELALHGCSNITKFPDISGDMKYL 732 (1085)
Q Consensus 665 ~Ls~~~i~~lp~~---------i~~l~~L~~L~L~~~~~~~~lp~~l~~---l~~L~~L~L~~~~~~~~~p~~~~~L~~L 732 (1085)
++++|.+..++.. +..+++|++|++++|......|..+.. .++|+.|++++|.......
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------- 256 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------- 256 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc---------
Confidence 6666666555432 234456666666665544444433322 2556666665554322110
Q ss_pred Cccccccccc-Ccccc--cCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCC
Q 044535 733 SLSETAIEEL-PSSVE--CLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTP 809 (1085)
Q Consensus 733 ~L~~~~i~~l-p~~l~--~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 809 (1085)
..+.+... +..+. ..++|+.|++++|...+..|..+..+++|++|++++|......|..
T Consensus 257 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---------------- 318 (455)
T 3v47_A 257 --GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA---------------- 318 (455)
T ss_dssp --TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT----------------
T ss_pred --chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH----------------
Confidence 00011000 00011 1234555555555444444444444444444444444444333444
Q ss_pred CcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCCEEECCCCCCCcC
Q 044535 810 IKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 810 i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l 888 (1085)
+..+++|+.|+|++|. ++.+++..+..+++|+.|+|++|.++.+ |..+..+++|++|++++|+++++
T Consensus 319 -------~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 319 -------FWGLTHLLKLNLSQNF-----LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp -------TTTCTTCCEEECCSSC-----CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred -------hcCcccCCEEECCCCc-----cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence 4445555555555554 3444444445555555555555555543 34455555555555555555554
Q ss_pred C---CCCCCCCCEeecccccc
Q 044535 889 N---LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 889 ~---~~~l~~L~~L~l~~c~~ 906 (1085)
+ +..+++|+.|+|++|+.
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCB
T ss_pred CHhHhccCCcccEEEccCCCc
Confidence 4 34445555555555543
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=6.7e-27 Score=266.16 Aligned_cols=296 Identities=19% Similarity=0.253 Sum_probs=140.4
Q ss_pred eeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccc
Q 044535 572 LRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSL 651 (1085)
Q Consensus 572 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l 651 (1085)
|+.|+++++.+..+|....+++|++|++++|.+..++. +..+++|++|++++|.+.. ++.+..+++|++|++++|.
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~l~~n~-- 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-ISALQNLTNLRELYLNEDN-- 121 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCSEEECTTSC--
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-chHHcCCCcCCEEECcCCc--
Confidence 44444444444444442345555555555555555444 5555555555555553322 2334444444444444432
Q ss_pred cccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCC-CCCCCcc
Q 044535 652 IKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFP-DISGDMK 730 (1085)
Q Consensus 652 ~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~L~ 730 (1085)
+..++. +..+++|++|++++|.....++. +..+++|++|++++|......+ ....+|+
T Consensus 122 -------------------i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 180 (347)
T 4fmz_A 122 -------------------ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLY 180 (347)
T ss_dssp -------------------CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred -------------------ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCC
Confidence 222222 33444444444444433333332 3444444444444432211100 0112222
Q ss_pred ccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 731 YLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 731 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
.|++++|.+..++. +..+++|+.|++++|......+ +..+++|++|++++|..... +. +..+++|++|++++|.+
T Consensus 181 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 181 SLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred EEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCcc
Confidence 33333333333333 4555556666666555443322 44555566666655543332 22 55555666666666655
Q ss_pred cccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCCEEECCCCCCCcCC
Q 044535 811 KELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 811 ~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
+.++ .+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.+... |..+..+++|+.|++++|.++.++
T Consensus 256 ~~~~-~~~~l~~L~~L~l~~n~-----l~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 256 SDIN-AVKDLTKLKMLNVGSNQ-----ISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp CCCG-GGTTCTTCCEEECCSSC-----CCCCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred CCCh-hHhcCCCcCEEEccCCc-----cCCCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 5542 35555566666666655 44443 245555666666666655532 344555566666666666555553
Q ss_pred -CCCCCCCCEeeccccc
Q 044535 890 -LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 890 -~~~l~~L~~L~l~~c~ 905 (1085)
+..+++|+.|++++|+
T Consensus 328 ~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 328 PLASLSKMDSADFANQV 344 (347)
T ss_dssp GGGGCTTCSEESSSCC-
T ss_pred Chhhhhccceeehhhhc
Confidence 4555555555555554
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=5.8e-27 Score=275.19 Aligned_cols=358 Identities=22% Similarity=0.206 Sum_probs=199.1
Q ss_pred cccccccccccEEEEecCCcccCcccccceeecccccccC------------CceeEEEeeCCCCCCCCCCCCCCCceEE
Q 044535 530 SDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILS------------NELRYLHWHRYPLKSLPSNFNPENLVEL 597 (1085)
Q Consensus 530 ~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~------------~~Lr~L~l~~~~l~~lp~~~~l~~L~~L 597 (1085)
+..|.++++|++|++++|.+. ..++..+..+. .++++|+++++.++.+|.. +++|++|
T Consensus 27 P~~i~~L~~L~~L~l~~n~~~--------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L 96 (454)
T 1jl5_A 27 PVEAENVKSKTEYYNAWSEWE--------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESL 96 (454)
T ss_dssp -------CCHHHHHHHHHHHH--------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEE
T ss_pred ChhHhcccchhhhhccCCccc--------ccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEE
Confidence 345666777777777665432 12222222221 2356777777777766663 4667777
Q ss_pred ecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCC--CCCCccEEecCCCcccccc
Q 044535 598 DMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPK--TSWSITELDLGETAIEEVP 675 (1085)
Q Consensus 598 ~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~--~~~~L~~L~Ls~~~i~~lp 675 (1085)
++++|.+..+|.. +.+|++|++++|.+.. ++.+ .++|++|++++|... .+|. .+.+|++|++++|.+..+|
T Consensus 97 ~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 97 VASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp ECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred EccCCcCCccccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcCcccC
Confidence 7777777666542 3567777777665433 2221 156777777766433 3442 2346677777777777666
Q ss_pred ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEE
Q 044535 676 PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVL 755 (1085)
Q Consensus 676 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 755 (1085)
..+ .+|++|++++|.. ..+| .++++++|++|++++|.. ..+|....+|+.|++++|.+..+|. ++.+++|+.|
T Consensus 170 ~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L 242 (454)
T 1jl5_A 170 DLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSL-KKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTI 242 (454)
T ss_dssp CCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCC-SSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEE
T ss_pred CCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEECCCCcC-CcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEE
Confidence 543 4677777777543 3355 366777777777776643 3456666677777777777777773 6777777777
Q ss_pred EccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchh
Q 044535 756 RLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNIL 835 (1085)
Q Consensus 756 ~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~ 835 (1085)
++++|...+ +|. .+++|+.|++++|.... +|.. +++|+.|++++|.++.+|.. .++|+.|++++|.
T Consensus 243 ~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~l~~N~--- 308 (454)
T 1jl5_A 243 YADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLNASSNE--- 308 (454)
T ss_dssp ECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEECCSSC---
T ss_pred ECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEECcCCc---
Confidence 777776543 443 23677777777765433 4443 36677777777777765532 2567777777776
Q ss_pred hhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeecccccccc--ccCC-
Q 044535 836 VFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQ--SLQE- 912 (1085)
Q Consensus 836 ~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~--~lp~- 912 (1085)
++.++. ..++|+.|++++|+++.+|.. +++|+.|++++|.++.+|. .+++|+.|++++|+... .+|.
T Consensus 309 --l~~i~~----~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~-~l~~L~~L~L~~N~l~~l~~ip~~ 378 (454)
T 1jl5_A 309 --IRSLCD----LPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE-LPQNLKQLHVEYNPLREFPDIPES 378 (454)
T ss_dssp --CSEECC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCCCCTT
T ss_pred --CCcccC----CcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc-hhhhccEEECCCCCCCcCCCChHH
Confidence 333321 114677777777777766654 4667777777777777665 56677777777664332 2331
Q ss_pred CCCC-------------CCCCeEEEeCCCCCC--cccC
Q 044535 913 FPSP-------------LRLVNLQAHECIYLE--TVPA 935 (1085)
Q Consensus 913 l~~~-------------~~L~~L~i~~c~~L~--~~~~ 935 (1085)
+... .+|+.|++++|...+ .+|.
T Consensus 379 l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp CCEEECCC------------------------------
T ss_pred HHhhhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 1111 457788888876543 4443
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5e-27 Score=279.48 Aligned_cols=306 Identities=22% Similarity=0.286 Sum_probs=215.6
Q ss_pred eEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhh-HhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCccc
Q 044535 573 RYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLW-EEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYS 650 (1085)
Q Consensus 573 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~ 650 (1085)
+.++.++..+..+|..+ +.++++|+|++|++..++ ..+..+++|++|+|++|.+....| .+.++++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 45667777777777755 457888888888888764 567788888888888887666655 477778888877777642
Q ss_pred ccccCC----CCCCccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC
Q 044535 651 LIKFPK----TSWSITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI 725 (1085)
Q Consensus 651 l~~~~~----~~~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 725 (1085)
..+|. .+.+|++|++++|.+..++ ..+..+++|++|++++|......|..+..+++|++|++++|
T Consensus 93 -~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--------- 162 (477)
T 2id5_A 93 -KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--------- 162 (477)
T ss_dssp -CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC---------
T ss_pred -CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC---------
Confidence 23332 2345566666666665543 34666677777777666554444555666666666666664
Q ss_pred CCCccccCcccccccccCc-ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEE
Q 044535 726 SGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLY 804 (1085)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1085)
.+..+|. .+..+++|+.|++++|......+..+..+++|+.|++++|.....+|.......+|++|+
T Consensus 163 ------------~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 163 ------------NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp ------------CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred ------------cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 4444443 467777888888888777666666777788888888888777777776666666788888
Q ss_pred ccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCCEEECCC
Q 044535 805 LAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLEILGLSG 882 (1085)
Q Consensus 805 L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~ 882 (1085)
+++|.++.+|. .+..+++|+.|+|++|. ++.++...+..+++|+.|+|++|.+..+ |..+..+++|+.|+|++
T Consensus 231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNP-----ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp EESSCCCSCCHHHHTTCTTCCEEECCSSC-----CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred CcCCcccccCHHHhcCccccCeeECCCCc-----CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 88888887774 56777888888888887 6666666677788888888888888764 56677888888888888
Q ss_pred CCCCcCC---CCCCCCCCEeecccccc
Q 044535 883 NIFESLN---LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 883 n~l~~l~---~~~l~~L~~L~l~~c~~ 906 (1085)
|.++.++ +..+++|+.|+|++|+.
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCc
Confidence 8888776 56677788888877653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=2.3e-26 Score=261.80 Aligned_cols=307 Identities=20% Similarity=0.303 Sum_probs=233.7
Q ss_pred cccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhh
Q 044535 532 AFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEM 611 (1085)
Q Consensus 532 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~ 611 (1085)
.+..+++|+.|++.++.+. .+ .++.. .++|++|++++|.+..+|....+++|++|++++|.+..++ .+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~---------~~-~~~~~-~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA---------SI-QGIEY-LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC---------CC-TTGGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cchhcccccEEEEeCCccc---------cc-hhhhh-cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HH
Confidence 3557899999999887652 22 23444 3589999999999999988558999999999999999885 58
Q ss_pred hhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccC--CCCCCccEEecCCCccccccccccCCCcccEEEc
Q 044535 612 QHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFP--KTSWSITELDLGETAIEEVPPAIESLGKLVVLRL 689 (1085)
Q Consensus 612 ~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~--~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L 689 (1085)
..+++|++|++++|.+... +.+..+++|++|++++|......+ ..+.+|++|++++|.+..++. +..+++|++|++
T Consensus 107 ~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp TTCTTCSEEECTTSCCCCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEEC
T ss_pred cCCCcCCEEECcCCcccCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEc
Confidence 9999999999999976654 448899999999999986553332 233455566666655555544 555556666666
Q ss_pred cCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCccccccccc
Q 044535 690 DNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSS 769 (1085)
Q Consensus 690 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~ 769 (1085)
++|.. ..++. +..+++|+.|++++ |.+..++. +..+++|+.|++++|......+
T Consensus 185 ~~n~l-~~~~~-~~~l~~L~~L~l~~---------------------n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 185 NYNQI-EDISP-LASLTSLHYFTAYV---------------------NQITDITP-VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp TTSCC-CCCGG-GGGCTTCCEEECCS---------------------SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCcc-ccccc-ccCCCccceeeccc---------------------CCCCCCch-hhcCCcCCEEEccCCccCCCcc--
Confidence 55432 23333 44455555555554 55555544 7788999999999998765433
Q ss_pred ccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCC
Q 044535 770 ICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGL 849 (1085)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l 849 (1085)
+..+++|++|++++|.... + ..+..+++|++|++++|.++.++ .+..+++|+.|++++|. +...++..+..+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~-----l~~~~~~~l~~l 310 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ-----LGNEDMEVIGGL 310 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-----CCGGGHHHHHTC
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc-----CCCcChhHhhcc
Confidence 8889999999999986554 3 46888999999999999999884 58899999999999998 777777789999
Q ss_pred CCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCc
Q 044535 850 CSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 850 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 887 (1085)
++|+.|+|++|.++.++. +..+++|+.|++++|.+++
T Consensus 311 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp TTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC----
T ss_pred ccCCEEEccCCccccccC-hhhhhccceeehhhhcccC
Confidence 999999999999998877 8899999999999998863
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=1.3e-26 Score=268.35 Aligned_cols=299 Identities=17% Similarity=0.167 Sum_probs=188.3
Q ss_pred ceeEEEeeCCCCCCCCCCC--CCCCceEEecCCCCchhhhH-hhhhccccceecccCCCCCCCCCC-CCCCCcccEEecc
Q 044535 571 ELRYLHWHRYPLKSLPSNF--NPENLVELDMHHSNLEHLWE-EMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLD 646 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~ 646 (1085)
++++|+++++.++.+|..+ .+++|++|++++|.+..++. .+..+++|++|++++|.+....|. +..+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~------- 118 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL------- 118 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC-------
Confidence 4555555555555555432 44555555555555544432 344455555555555544443332 444444
Q ss_pred CcccccccCCCCCCccEEecCCCcccccccc-ccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCC
Q 044535 647 GCYSLIKFPKTSWSITELDLGETAIEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDI 725 (1085)
Q Consensus 647 ~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 725 (1085)
|++|++++|.+..+|.. +..+++|++|++++|......|..+..+++|++|++++|.....-...
T Consensus 119 --------------L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 184 (390)
T 3o6n_A 119 --------------LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184 (390)
T ss_dssp --------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGG
T ss_pred --------------CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccccc
Confidence 45555555555666655 356666777777666554444555666666777777666544333344
Q ss_pred CCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEc
Q 044535 726 SGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYL 805 (1085)
Q Consensus 726 ~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L 805 (1085)
+.+|+.|++++|.+..++ ..++|+.|++++|..... |.. ..++|+.|++++|..... ..+..+++|++|++
T Consensus 185 l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 255 (390)
T 3o6n_A 185 IPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDL 255 (390)
T ss_dssp CTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred ccccceeecccccccccC----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEEC
Confidence 556666666666655432 345777788777765433 322 246778888877765442 45677788888888
Q ss_pred cCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCC
Q 044535 806 AGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNI 884 (1085)
Q Consensus 806 ~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 884 (1085)
++|.++.+ |..+..+++|+.|+|++|. ++.++. .+..+++|+.|+|++|++..+|..+..+++|+.|++++|.
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNR-----LVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSC-----CCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CCCcCCCcChhHccccccCCEEECCCCc-----CcccCc-ccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc
Confidence 88887754 6677778888888888877 555554 3456778888888888888887777778888888888888
Q ss_pred CCcCCCCCCCCCCEeeccccc
Q 044535 885 FESLNLKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 885 l~~l~~~~l~~L~~L~l~~c~ 905 (1085)
++.+++..+++|+.|++++|+
T Consensus 330 i~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 IVTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCCCTTCCCSEEECCSSC
T ss_pred cceeCchhhccCCEEEcCCCC
Confidence 888887788888888888765
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.1e-26 Score=269.20 Aligned_cols=304 Identities=18% Similarity=0.155 Sum_probs=145.5
Q ss_pred cccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhh
Q 044535 532 AFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEM 611 (1085)
Q Consensus 532 ~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~ 611 (1085)
.+.++++|++|+++++.+. .++ ++..+ ++|++|++++|.++.+| ...+++|++|++++|.+..++ +
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~---------~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT---------DMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC---------CCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCCcc---------cCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--c
Confidence 3445566666666555431 111 22222 24555555555555543 224455555555555554442 4
Q ss_pred hhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccC
Q 044535 612 QHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDN 691 (1085)
Q Consensus 612 ~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~ 691 (1085)
..+++|++|++++|.+.. ++ ++.+++| ++|++++|.+..++ ++.+++|++|++++
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~-~~~l~~L---------------------~~L~l~~N~l~~l~--l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD-VSQNPLL---------------------TYLNCARNTLTEID--VSHNTQLTELDCHL 157 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC-CTTCTTC---------------------CEEECTTSCCSCCC--CTTCTTCCEEECTT
T ss_pred CCCCcCCEEECCCCcCCe-ec-CCCCCcC---------------------CEEECCCCccceec--cccCCcCCEEECCC
Confidence 445555555555544332 22 4444444 44444444445543 55666666666666
Q ss_pred CCCCCccCCcccCCCCccEEEecccCCCccCC-CCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccc
Q 044535 692 CRRLKNLPSSICNLTSLTELALHGCSNITKFP-DISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSI 770 (1085)
Q Consensus 692 ~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l 770 (1085)
|..++.++ ++.+++|++|++++|.... +| ....+|+.|++++|.+..++ ++.+++|+.|++++|++.+ +| +
T Consensus 158 n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~ 229 (457)
T 3bz5_A 158 NKKITKLD--VTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--V 229 (457)
T ss_dssp CSCCCCCC--CTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--C
T ss_pred CCcccccc--cccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--c
Confidence 65555542 5556666666666653322 22 12234444455555555442 4555555555555555444 33 4
Q ss_pred cCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCC
Q 044535 771 CKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLC 850 (1085)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~ 850 (1085)
..+++|+.|++++|..... | +..+++|+.|++++|.++ .|++++|. +++.+| +..++
T Consensus 230 ~~l~~L~~L~l~~N~l~~~-~--~~~l~~L~~L~l~~n~L~-------------~L~l~~n~----~~~~~~---~~~l~ 286 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTEL-D--VSTLSKLTTLHCIQTDLL-------------EIDLTHNT----QLIYFQ---AEGCR 286 (457)
T ss_dssp TTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECTTCCCS-------------CCCCTTCT----TCCEEE---CTTCT
T ss_pred cccCCCCEEEeeCCcCCCc-C--HHHCCCCCEEeccCCCCC-------------EEECCCCc----cCCccc---ccccc
Confidence 4555555555555543332 2 233444444444443322 22222222 011111 22334
Q ss_pred CccEEecCCCCCC-CCCc--------ccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeeccccc
Q 044535 851 SLTELHLNDCNLL-ELPS--------ALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 851 ~L~~L~Ls~n~l~-~lp~--------~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~ 905 (1085)
+|+.|++++|... .+|. .+..+++|+.|++++|+++++++..+++|+.|++++|.
T Consensus 287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCSSC
T ss_pred cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCCCC
Confidence 4444444444322 1111 13444666777777777776666666777777776643
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.8e-26 Score=280.26 Aligned_cols=301 Identities=17% Similarity=0.113 Sum_probs=213.2
Q ss_pred CCCceEEecCCCCchhhhHh-hhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcccccccC---CCCCCccEEe
Q 044535 591 PENLVELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYSLIKFP---KTSWSITELD 665 (1085)
Q Consensus 591 l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~---~~~~~L~~L~ 665 (1085)
+.+++.|++++|.+..+|.. +..+++|++|+|++|.+....| .++.+++|++|+|++|......| ..+.+|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45556666666665555543 4556666666666665554444 35666666666666654332222 2234566666
Q ss_pred cCCCcccccccc-ccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCc
Q 044535 666 LGETAIEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPS 744 (1085)
Q Consensus 666 Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~ 744 (1085)
+++|.+..+|.. ++++++|++|++++|......|..++++++|++|++++|.....-+..+.+|+.|++++|.+..+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l-- 207 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-- 207 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE--
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc--
Confidence 666667777765 47788888888888766665666677788888888887765544445566777777777777654
Q ss_pred ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCccc-CccccCCCCC
Q 044535 745 SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKEL-PSSIDHLPQL 823 (1085)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L 823 (1085)
...++|+.|++++|.+... +..+ .++|+.|++++|.... +..+..+++|+.|+|++|.++.+ |..+..+++|
T Consensus 208 --~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 280 (597)
T 3oja_B 208 --AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280 (597)
T ss_dssp --ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred --cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC
Confidence 3456788888888875443 3222 3678888888887654 35678888899999998888855 6778888899
Q ss_pred CEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeeccc
Q 044535 824 SLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSY 903 (1085)
Q Consensus 824 ~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~ 903 (1085)
+.|+|++|. ++.+|. .+..+++|+.|+|++|.+..+|..+..+++|+.|+|++|.++.+++..+++|+.|+|++
T Consensus 281 ~~L~Ls~N~-----l~~l~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 281 ERLYISNNR-----LVALNL-YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp CEEECTTSC-----CCEEEC-SSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCS
T ss_pred CEEECCCCC-----CCCCCc-ccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeC
Confidence 999999887 666654 34678889999999999988888888889999999999999888888888999999988
Q ss_pred ccc
Q 044535 904 CKR 906 (1085)
Q Consensus 904 c~~ 906 (1085)
|+.
T Consensus 355 N~~ 357 (597)
T 3oja_B 355 NDW 357 (597)
T ss_dssp SCE
T ss_pred CCC
Confidence 763
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=3e-26 Score=265.17 Aligned_cols=307 Identities=17% Similarity=0.173 Sum_probs=239.2
Q ss_pred ccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCC-CC-CCCCceEEecCCCCchhhhH-hh
Q 044535 535 GMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPS-NF-NPENLVELDMHHSNLEHLWE-EM 611 (1085)
Q Consensus 535 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l~~-~~ 611 (1085)
.+.+++.|++.++.+ ..++..+....++|++|+++++.+..++. .+ .+++|++|+|++|.+..++. .+
T Consensus 43 ~l~~l~~l~l~~~~l---------~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM---------RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEESCEE---------SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEecCCch---------hhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh
Confidence 478999999998765 45666654445689999999999999876 44 89999999999999998754 57
Q ss_pred hhccccceecccCCCCCCCCCC-CCCCCcccEEeccCcccccccCCCCCCccEEecCCCccccc-cccccCCCcccEEEc
Q 044535 612 QHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEV-PPAIESLGKLVVLRL 689 (1085)
Q Consensus 612 ~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~l-p~~i~~l~~L~~L~L 689 (1085)
..+++|++|++++|.+....+. +..+++|++|++++|... .+ |..+..+++|++|++
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE---------------------RIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------BCCTTTTSSCTTCCEEEC
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC---------------------ccChhhccCCCCCCEEEC
Confidence 9999999999999987755554 588888888888877533 22 233556666666666
Q ss_pred cCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCccccccccc
Q 044535 690 DNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSS 769 (1085)
Q Consensus 690 ~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~ 769 (1085)
++|... .++ +..+++|+.|++++|... .++ ...+++.|++++|.+..+|.. .+++|+.|++++|...+. ..
T Consensus 173 ~~n~l~-~~~--~~~l~~L~~L~l~~n~l~-~~~-~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~ 243 (390)
T 3o6n_A 173 SSNRLT-HVD--LSLIPSLFHANVSYNLLS-TLA-IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AW 243 (390)
T ss_dssp CSSCCS-BCC--GGGCTTCSEEECCSSCCS-EEE-CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GG
T ss_pred CCCcCC-ccc--cccccccceeeccccccc-ccC-CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HH
Confidence 665432 222 445666666666665322 221 223566777777777777653 357899999999987653 46
Q ss_pred ccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCC
Q 044535 770 ICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGL 849 (1085)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l 849 (1085)
+..+++|++|++++|......|..+..+++|+.|++++|.++.+|..+..+++|+.|+|++|. +..+|.. +..+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~-~~~l 317 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-----LLHVERN-QPQF 317 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-----CCCCGGG-HHHH
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-----ceecCcc-cccc
Confidence 788999999999999887777888999999999999999999998888899999999999998 7777763 6778
Q ss_pred CCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcC
Q 044535 850 CSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 850 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 888 (1085)
++|+.|+|++|.++.++ +..+++|+.|++++|.+...
T Consensus 318 ~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 318 DRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CcCCEEECCCCccceeC--chhhccCCEEEcCCCCccch
Confidence 99999999999999886 78899999999999998754
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.2e-25 Score=278.10 Aligned_cols=399 Identities=23% Similarity=0.200 Sum_probs=240.7
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCC-C-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSN-F-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 594 (1085)
.+|++.+....+.+.+|.++++|++|++++|.+ ..++.+.+.-..+|++|++++|.++.+|.. | ++++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i---------~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC---------CCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 578888888888999999999999999999876 445554444445899999999999999864 4 89999
Q ss_pred eEEecCCCCchhhhHh-hhhccccceecccCCCCCCC-CC-CCCCCCcccEEeccCcccccccCCCC-------CCccEE
Q 044535 595 VELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNE-TP-DLSSARNLEIMVLDGCYSLIKFPKTS-------WSITEL 664 (1085)
Q Consensus 595 ~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~-~~-~l~~l~~L~~L~L~~~~~l~~~~~~~-------~~L~~L 664 (1085)
++|+|++|+++.++.. ++++++|++|++++|.+... .| .++.+++|++|++++|......+..+ .....+
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 9999999999988764 78999999999999987543 34 37889999999999886433222222 123355
Q ss_pred ecCCCccccccccccCCCcccEEEccCCCCCCc-----------------------------------------------
Q 044535 665 DLGETAIEEVPPAIESLGKLVVLRLDNCRRLKN----------------------------------------------- 697 (1085)
Q Consensus 665 ~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~----------------------------------------------- 697 (1085)
+++.|.+..++........+..|++.++.....
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 666666655544433333333333332211000
Q ss_pred -----------cCC----------------------cccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCc
Q 044535 698 -----------LPS----------------------SICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPS 744 (1085)
Q Consensus 698 -----------lp~----------------------~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~ 744 (1085)
.+. .+....+|+.|++.+|......+..+..++.+.+..+.+...+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~- 365 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF- 365 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC-
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc-
Confidence 000 0112233444444443322222222223333333333332222
Q ss_pred ccccCCCCCEEEccCCcccc--cc-----------------------cccccCCCCCcEEEeeCCCCCCCcc-hhhcCCC
Q 044535 745 SVECLTELTVLRLQKCKRLK--RV-----------------------SSSICKLKSLEILYLFGCSKLEGLP-EILESME 798 (1085)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~--~l-----------------------~~~l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~ 798 (1085)
....+++|+.|++++|.... .. +..+..+++|+.+++..|......+ ..+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 12345556666665554321 12 2233445555555555544333322 3455666
Q ss_pred CccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCC
Q 044535 799 RLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLE 876 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~ 876 (1085)
+|+.++++.|.+..+ +..+..+++|+.|+|++|.. ...+++..+..+++|+.|+|++|+++.+ |..+..+++|+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~----~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF----QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE----GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhccc----ccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 777777777776643 34556677777777777762 2233334566777777777777777764 45677777777
Q ss_pred EEECCCCCCCcCC---CCCCCCCCEeeccccccccccCC-CCCC-CCCCeEEEeCCCC
Q 044535 877 ILGLSGNIFESLN---LKPFSCLTHLNVSYCKRLQSLQE-FPSP-LRLVNLQAHECIY 929 (1085)
Q Consensus 877 ~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L~~lp~-l~~~-~~L~~L~i~~c~~ 929 (1085)
+|+|++|+++.++ +..+++|+.|+|++|......|. +... .+|+.|++++++-
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 7777777777765 56677777777777654433333 3222 3566777776653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=5.7e-26 Score=266.95 Aligned_cols=345 Identities=19% Similarity=0.138 Sum_probs=230.1
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCCCCCCCceE
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSNFNPENLVE 596 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~l~~L~~ 596 (1085)
.+|++.+....++ .|..+++|++|++++|.+.. ++ +.. ..+|++|++++|.+..+| ...+++|++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~---------~~--~~~-l~~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITT---------LD--LSQ-NTNLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSC---------CC--CTT-CTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCe---------Ec--ccc-CCCCCEEECcCCCCceee-cCCCCcCCE
Confidence 4566666555443 68899999999999987632 21 333 358999999999999986 448999999
Q ss_pred EecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccC-CCCCCccEEecCCCcccccc
Q 044535 597 LDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFP-KTSWSITELDLGETAIEEVP 675 (1085)
Q Consensus 597 L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~-~~~~~L~~L~Ls~~~i~~lp 675 (1085)
|++++|.+..++ +..+++|++|++++|.+... +++.+++|++|++++|..+..++ ..+.+|++|++++|.+..+|
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec
Confidence 999999999886 88999999999999987663 48899999999999997665543 34568888888888888887
Q ss_pred ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCC-CCCCCccccCcccccccccCcccccCCCCCE
Q 044535 676 PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFP-DISGDMKYLSLSETAIEELPSSVECLTELTV 754 (1085)
Q Consensus 676 ~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 754 (1085)
++.+++|+.|++++|.... ++ ++.+++|++|++++|.... +| ....+|+.|++++|.+..+| ++.+++|+.
T Consensus 187 --l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~~-ip~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~ 258 (457)
T 3bz5_A 187 --VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLTE-IDVTPLTQLTYFDCSVNPLTELD--VSTLSKLTT 258 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred --cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCcccc-cCccccCCCCEEEeeCCcCCCcC--HHHCCCCCE
Confidence 7788888888888865433 33 6778888888888764333 33 11234444455555554444 334444444
Q ss_pred EEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc-ccCccccCCCCCCEEEccCCCc
Q 044535 755 LRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK-ELPSSIDHLPQLSLLSLENCKN 833 (1085)
Q Consensus 755 L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~ 833 (1085)
|+++.+ +|+.|++++|.....+| ++.+++|+.|++++|... .+|. ..++|+.|+++
T Consensus 259 L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~---- 315 (457)
T 3bz5_A 259 LHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS---- 315 (457)
T ss_dssp EECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT----
T ss_pred EeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh----
Confidence 444332 34455555555555444 345566666666666532 3332 23334444433
Q ss_pred hhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeeccccccccccCCC
Q 044535 834 ILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQEF 913 (1085)
Q Consensus 834 l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~~lp~l 913 (1085)
++++|+.|++++|+++.++ +..+++|+.|++++|+++++ +.|..|.++++..-..
T Consensus 316 --------------~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l-----~~L~~L~l~~n~l~g~---- 370 (457)
T 3bz5_A 316 --------------QNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAE---- 370 (457)
T ss_dssp --------------TCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC-----TTGGGSSGGGTSEEEE----
T ss_pred --------------hcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc-----cccccccccCCcEEec----
Confidence 4468899999999999874 88899999999999998874 4555555554322111
Q ss_pred CCCCCCCeEEEeCCCCCCcccCC
Q 044535 914 PSPLRLVNLQAHECIYLETVPAS 936 (1085)
Q Consensus 914 ~~~~~L~~L~i~~c~~L~~~~~~ 936 (1085)
+.+..|+.++++++.--+.+|..
T Consensus 371 ~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 371 GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp EEEEECCCBCCBTTBEEEECCTT
T ss_pred ceeeecCccccccCcEEEEcChh
Confidence 12223334555555444455543
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=267.70 Aligned_cols=295 Identities=19% Similarity=0.240 Sum_probs=246.5
Q ss_pred cCCceeEEEeeCCCCCCCCC-CC-CCCCceEEecCCCCchhh-hHhhhhccccceecccCCCCCCCCCC-CCCCCcccEE
Q 044535 568 LSNELRYLHWHRYPLKSLPS-NF-NPENLVELDMHHSNLEHL-WEEMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIM 643 (1085)
Q Consensus 568 l~~~Lr~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L 643 (1085)
++.+++.|++++|.+..++. .| .+++|++|+|++|.+..+ |..+.++++|++|+|++|.+....+. +.++++|++|
T Consensus 30 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 30 IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 34578999999999988864 44 889999999999999877 67789999999999999987665554 7899999999
Q ss_pred eccCcccccccC---CCCCCccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCC
Q 044535 644 VLDGCYSLIKFP---KTSWSITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNI 719 (1085)
Q Consensus 644 ~L~~~~~l~~~~---~~~~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~ 719 (1085)
++++|......+ ..+.+|++|++++|.+..++ ..+..+++|++|++++|......+..+.++++|+.|++++|..
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i- 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI- 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC-
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC-
Confidence 999987654433 34568999999999998775 4689999999999999865544444578899999999988643
Q ss_pred ccCCCCCCCccccCccccccccc-CcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCC
Q 044535 720 TKFPDISGDMKYLSLSETAIEEL-PSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESME 798 (1085)
Q Consensus 720 ~~~p~~~~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 798 (1085)
..+ +..+..+++|+.|++++|...+.+|.......+|+.|++++|......+..+..++
T Consensus 189 --------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 189 --------------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp --------------------CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred --------------------cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 222 23577889999999999999999888877788999999999876654446789999
Q ss_pred CccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCC
Q 044535 799 RLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLE 876 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~ 876 (1085)
+|+.|+|++|.++.++. .+..+++|+.|+|++|. +..+++..+..+++|+.|+|++|.++.++. .+..+++|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-----LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-----CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCc-----cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 99999999999997764 58899999999999998 777777789999999999999999998875 578999999
Q ss_pred EEECCCCCCCcC
Q 044535 877 ILGLSGNIFESL 888 (1085)
Q Consensus 877 ~L~L~~n~l~~l 888 (1085)
.|++++|.+...
T Consensus 324 ~L~l~~N~l~c~ 335 (477)
T 2id5_A 324 TLILDSNPLACD 335 (477)
T ss_dssp EEECCSSCEECS
T ss_pred EEEccCCCccCc
Confidence 999999998743
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2e-25 Score=272.69 Aligned_cols=300 Identities=18% Similarity=0.242 Sum_probs=211.3
Q ss_pred ceeEEEeeCCCCCCCCCCC--CCCCceEEecCCCCchhhhH-hhhhccccceecccCCCCCCCCCC-CCCCCcccEEecc
Q 044535 571 ELRYLHWHRYPLKSLPSNF--NPENLVELDMHHSNLEHLWE-EMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLD 646 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~ 646 (1085)
+++.|+++++.+..+|..+ .+++|++|+|++|.+..++. .+..+++|++|+|++|.+....|. ++++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 3444444444444444432 34555555555555554432 445555555555555554444443 4555555555555
Q ss_pred CcccccccCC----CCCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCcc
Q 044535 647 GCYSLIKFPK----TSWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITK 721 (1085)
Q Consensus 647 ~~~~l~~~~~----~~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 721 (1085)
+|... .+|. .+.+|++|++++|.+..+++ .++.+++|++|++++|... .++ ++.+++|+.|++++|....
T Consensus 132 ~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~~- 206 (597)
T 3oja_B 132 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLST- 206 (597)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCSE-
T ss_pred CCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC--hhhhhhhhhhhcccCcccc-
Confidence 55322 2322 23455566666666665554 5777888888888876543 333 5567788888888764332
Q ss_pred CCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCcc
Q 044535 722 FPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLE 801 (1085)
Q Consensus 722 ~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~ 801 (1085)
++ ...+|+.|++++|.+..+|..+ .++|+.|+|++|.+.+ +..+..+++|+.|++++|......|..+..+++|+
T Consensus 207 l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 281 (597)
T 3oja_B 207 LA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281 (597)
T ss_dssp EE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCC
Confidence 22 2346788888888888777544 3689999999998776 35688999999999999988888889999999999
Q ss_pred EEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECC
Q 044535 802 TLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLS 881 (1085)
Q Consensus 802 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 881 (1085)
.|+|++|.++.+|..+..+++|+.|+|++|. +..+|.. +..+++|+.|+|++|.++.+| +..+++|+.|+++
T Consensus 282 ~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-----l~~i~~~-~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~ 353 (597)
T 3oja_B 282 RLYISNNRLVALNLYGQPIPTLKVLDLSHNH-----LLHVERN-QPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLS 353 (597)
T ss_dssp EEECTTSCCCEEECSSSCCTTCCEEECCSSC-----CCCCGGG-HHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECC
T ss_pred EEECCCCCCCCCCcccccCCCCcEEECCCCC-----CCccCcc-cccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEee
Confidence 9999999999999888899999999999998 7777764 678999999999999999886 7889999999999
Q ss_pred CCCCCcC
Q 044535 882 GNIFESL 888 (1085)
Q Consensus 882 ~n~l~~l 888 (1085)
+|.+...
T Consensus 354 ~N~~~~~ 360 (597)
T 3oja_B 354 HNDWDCN 360 (597)
T ss_dssp SSCEEHH
T ss_pred CCCCCCh
Confidence 9997753
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=6.9e-25 Score=247.55 Aligned_cols=284 Identities=18% Similarity=0.234 Sum_probs=208.9
Q ss_pred ceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhH-hhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCc
Q 044535 571 ELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWE-EMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGC 648 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~ 648 (1085)
+++.++++++.+..+|..+ .++|++|++++|++..++. .+..+++|++|++++|.+....| .+..+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 5778888888888888765 3688899999999887765 58889999999999988777655 4888899999999887
Q ss_pred ccccccCCC-CCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCC--ccCCcccCCCCccEEEecccCCCccCCC
Q 044535 649 YSLIKFPKT-SWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLK--NLPSSICNLTSLTELALHGCSNITKFPD 724 (1085)
Q Consensus 649 ~~l~~~~~~-~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~--~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 724 (1085)
.. ..+|.. ..+|++|++++|.+..++. .+..+++|++|++++|.... ..+..+..+++|++|++++|.
T Consensus 111 ~l-~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~------- 182 (330)
T 1xku_A 111 QL-KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN------- 182 (330)
T ss_dssp CC-SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-------
T ss_pred cC-CccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-------
Confidence 53 345443 3578888888888887765 37788888888888876532 455667778888888877753
Q ss_pred CCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEE
Q 044535 725 ISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLY 804 (1085)
Q Consensus 725 ~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1085)
+..+|..+. ++|+.|++++|...+..|..+..+++|+.|++++|......+..+..+++|++|+
T Consensus 183 --------------l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 183 --------------ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp --------------CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred --------------cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEE
Confidence 334444332 6788888888877766677777888888888888776665556777788888888
Q ss_pred ccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcC------CCCccEEecCCCCCCC---CCcccCCCCCC
Q 044535 805 LAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSG------LCSLTELHLNDCNLLE---LPSALTCLSSL 875 (1085)
Q Consensus 805 L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~------l~~L~~L~Ls~n~l~~---lp~~l~~l~~L 875 (1085)
+++|.++.+|.++..+++|++|+|++|. ++.++...+.. .++|+.|++++|.+.. .|..+.++++|
T Consensus 247 L~~N~l~~lp~~l~~l~~L~~L~l~~N~-----i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 247 LNNNKLVKVPGGLADHKYIQVVYLHNNN-----ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321 (330)
T ss_dssp CCSSCCSSCCTTTTTCSSCCEEECCSSC-----CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred CCCCcCccCChhhccCCCcCEEECCCCc-----CCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence 8888888888888888888888888887 66666655532 3667777777777763 24567777777
Q ss_pred CEEECCCCC
Q 044535 876 EILGLSGNI 884 (1085)
Q Consensus 876 ~~L~L~~n~ 884 (1085)
+.++|++|+
T Consensus 322 ~~l~L~~N~ 330 (330)
T 1xku_A 322 AAVQLGNYK 330 (330)
T ss_dssp GGEEC----
T ss_pred eEEEecccC
Confidence 777777763
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=7.6e-25 Score=247.35 Aligned_cols=282 Identities=17% Similarity=0.228 Sum_probs=186.6
Q ss_pred ceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhh-HhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCc
Q 044535 571 ELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLW-EEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGC 648 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~ 648 (1085)
+++.++++++.++.+|..+ .++|++|++++|.+..++ ..+..+++|++|++++|.+....| .+..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5778888888888888766 368888888888888774 468888888888888887766655 3778888888888776
Q ss_pred ccccccCCCC-CCccEEecCCCcccccccc-ccCCCcccEEEccCCCCC--CccCCcccCCCCccEEEecccCCCccCCC
Q 044535 649 YSLIKFPKTS-WSITELDLGETAIEEVPPA-IESLGKLVVLRLDNCRRL--KNLPSSICNLTSLTELALHGCSNITKFPD 724 (1085)
Q Consensus 649 ~~l~~~~~~~-~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~--~~lp~~l~~l~~L~~L~L~~~~~~~~~p~ 724 (1085)
... .+|... .+|++|++++|.+..+|.. +..+++|++|++++|... ...|..+..+ +|++|
T Consensus 113 ~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L------------- 177 (332)
T 2ft3_A 113 HLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYL------------- 177 (332)
T ss_dssp CCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCC-------------
T ss_pred cCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEE-------------
Confidence 432 333322 3566666666666655543 555666666666655432 1233334333 44444
Q ss_pred CCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEE
Q 044535 725 ISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLY 804 (1085)
Q Consensus 725 ~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1085)
++++|.+..+|..+. ++|+.|++++|...+..+..+..+++|+.|++++|......+..+..+++|+.|+
T Consensus 178 --------~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 178 --------RISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp --------BCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred --------ECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 444555555555443 5777777777776666666677777777777777766665556677778888888
Q ss_pred ccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcC------CCCccEEecCCCCCC--C-CCcccCCCCCC
Q 044535 805 LAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSG------LCSLTELHLNDCNLL--E-LPSALTCLSSL 875 (1085)
Q Consensus 805 L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~------l~~L~~L~Ls~n~l~--~-lp~~l~~l~~L 875 (1085)
+++|.++.+|..+..+++|+.|++++|. ++.++...+.. .++|+.|++++|.+. . .|..+..+++|
T Consensus 248 L~~N~l~~lp~~l~~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L 322 (332)
T 2ft3_A 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNN-----ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322 (332)
T ss_dssp CCSSCCCBCCTTGGGCTTCCEEECCSSC-----CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCS
T ss_pred CCCCcCeecChhhhcCccCCEEECCCCC-----CCccChhHccccccccccccccceEeecCcccccccCcccccccchh
Confidence 8888888787777777888888888777 66666544443 355777777777765 2 33456666677
Q ss_pred CEEECCCC
Q 044535 876 EILGLSGN 883 (1085)
Q Consensus 876 ~~L~L~~n 883 (1085)
+.|++++|
T Consensus 323 ~~l~l~~n 330 (332)
T 2ft3_A 323 LAIQFGNY 330 (332)
T ss_dssp TTEEC---
T ss_pred hhhhcccc
Confidence 77766665
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=6.2e-24 Score=262.54 Aligned_cols=374 Identities=24% Similarity=0.266 Sum_probs=274.1
Q ss_pred cccCCCcceeeeccccccccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCCCCCCCCCC-C-CCCCc
Q 044535 517 SLDLSKTSELHLRSDAFVGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRYPLKSLPSN-F-NPENL 594 (1085)
Q Consensus 517 ~ldl~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~l~~L 594 (1085)
.+|++.+....+.+.+|.++++|++|++++|.+ ..++.+.+....+|++|++++|.++.+|.. | ++++|
T Consensus 80 ~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l---------~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L 150 (635)
T 4g8a_A 80 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---------QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 150 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCC---------CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred EEECCCCcCCCcChhHhcCCCCCCEEEccCCcC---------CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence 567888888888999999999999999999876 455655544456899999999999999875 4 89999
Q ss_pred eEEecCCCCchh--hhHhhhhccccceecccCCCCCCCCCC-CCC---------------------------CCcccEEe
Q 044535 595 VELDMHHSNLEH--LWEEMQHALNLRRIDLSYSLHLNETPD-LSS---------------------------ARNLEIMV 644 (1085)
Q Consensus 595 ~~L~L~~~~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~~-l~~---------------------------l~~L~~L~ 644 (1085)
++|+|++|.+.. +|..+..+++|++|++++|.+....+. +.. ...++.++
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~ 230 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 230 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhh
Confidence 999999999974 577889999999999999876544331 111 11223333
Q ss_pred ccCccccc---------------------------cc----------------------------------CCCCCCccE
Q 044535 645 LDGCYSLI---------------------------KF----------------------------------PKTSWSITE 663 (1085)
Q Consensus 645 L~~~~~l~---------------------------~~----------------------------------~~~~~~L~~ 663 (1085)
+.++.... .+ .....+++.
T Consensus 231 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 310 (635)
T 4g8a_A 231 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSS 310 (635)
T ss_dssp EESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSE
T ss_pred hhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccc
Confidence 33221000 00 000112334
Q ss_pred EecCCCccccccccccCCCcccEEEccCCCCCCcc-------------------CCcccCCCCccEEEecccCCCcc--C
Q 044535 664 LDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNL-------------------PSSICNLTSLTELALHGCSNITK--F 722 (1085)
Q Consensus 664 L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~l-------------------p~~l~~l~~L~~L~L~~~~~~~~--~ 722 (1085)
+.+.++.+..++. +.....|+.|++.+|...... +.....+++|+.|++++|..... .
T Consensus 311 l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 389 (635)
T 4g8a_A 311 FSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC 389 (635)
T ss_dssp EEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEEC
T ss_pred ccccccccccccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccc
Confidence 4444444433322 334455555555554321111 11133467777777777654321 1
Q ss_pred CC---CCCCccccCcccccccccCcccccCCCCCEEEccCCccccccc-ccccCCCCCcEEEeeCCCCCCCcchhhcCCC
Q 044535 723 PD---ISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS-SSICKLKSLEILYLFGCSKLEGLPEILESME 798 (1085)
Q Consensus 723 p~---~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~ 798 (1085)
+. ...+++.|++..+.+..++..+..+++|+.+++..+......+ ..+..+++|+.++++.|......+..+..++
T Consensus 390 ~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~ 469 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 469 (635)
T ss_dssp CHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred ccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccch
Confidence 11 2346777778878777777788889999999999887766554 4467899999999999988888888899999
Q ss_pred CccEEEccCCCCc--ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCCCCCC
Q 044535 799 RLETLYLAGTPIK--ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTCLSSL 875 (1085)
Q Consensus 799 ~L~~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 875 (1085)
+|+.|++++|.+. ..|..+..+++|+.|+|++|. ++.+++..+.++++|++|+|++|+++.++ ..+..+++|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-----L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 544 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-----LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCc-----cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence 9999999999754 367889999999999999998 88888888999999999999999999875 468999999
Q ss_pred CEEECCCCCCCcCC---CCCC-CCCCEeeccccc
Q 044535 876 EILGLSGNIFESLN---LKPF-SCLTHLNVSYCK 905 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~---~~~l-~~L~~L~l~~c~ 905 (1085)
+.|+|++|+++.++ +..+ ++|+.|+|++|+
T Consensus 545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999999999986 5555 689999999876
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.91 E-value=4.4e-23 Score=232.73 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=209.3
Q ss_pred cccEEeccCcccccccCCC-CCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCCcccCCCCccEEEeccc
Q 044535 639 NLEIMVLDGCYSLIKFPKT-SWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGC 716 (1085)
Q Consensus 639 ~L~~L~L~~~~~l~~~~~~-~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 716 (1085)
+|+.++++++. +..+|.. ..+++.|++++|.+..++. .++++++|++|++++|......|..+.++++|++|++++|
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCC-ccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 44455554432 2234432 2467778888888888876 6889999999999998766666888889999999999987
Q ss_pred CCCccCCC-CCCCccccCcccccccccCc-ccccCCCCCEEEccCCcccc--cccccccCCCCCcEEEeeCCCCCCCcch
Q 044535 717 SNITKFPD-ISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLK--RVSSSICKLKSLEILYLFGCSKLEGLPE 792 (1085)
Q Consensus 717 ~~~~~~p~-~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~~~l~~lp~ 792 (1085)
... .+|. ...+|+.|++++|.+..++. .+..+++|+.|++++|.... ..+..+..+++|++|++++|... .+|.
T Consensus 111 ~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~ 188 (330)
T 1xku_A 111 QLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188 (330)
T ss_dssp CCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred cCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCc
Confidence 644 4553 44688999999999987765 47889999999999998753 56677888999999999987654 4555
Q ss_pred hhcCCCCccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCC
Q 044535 793 ILESMERLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTC 871 (1085)
Q Consensus 793 ~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 871 (1085)
.+. ++|++|++++|.++.+ |..+..+++|+.|+|++|. ++.++...+..+++|+.|+|++|.++.+|..+..
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-----ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-----CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-----CceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 443 7899999999999866 5678899999999999998 7777776788899999999999999999999999
Q ss_pred CCCCCEEECCCCCCCcCCCCC---------CCCCCEeecccccccc-ccC--CCCCCCCCCeEEEeCC
Q 044535 872 LSSLEILGLSGNIFESLNLKP---------FSCLTHLNVSYCKRLQ-SLQ--EFPSPLRLVNLQAHEC 927 (1085)
Q Consensus 872 l~~L~~L~L~~n~l~~l~~~~---------l~~L~~L~l~~c~~L~-~lp--~l~~~~~L~~L~i~~c 927 (1085)
+++|+.|++++|.++.++... +++|+.|++.+|+... .++ .+.....++.+++.++
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 999999999999999887332 3567777777776421 111 2333444555555543
No 50
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.91 E-value=8.9e-26 Score=221.67 Aligned_cols=108 Identities=25% Similarity=0.397 Sum_probs=102.7
Q ss_pred CccccccCchhHHHHHHHHhCCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcccC
Q 044535 1 FRGEDTRSNFTSHLYAALCRAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKDTT 79 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~~~ 79 (1085)
|+|+| |+.|++||+.+|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||++||.+|++|.+
T Consensus 27 y~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~-- 103 (154)
T 3h16_A 27 HAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLES-- 103 (154)
T ss_dssp EEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCT--
T ss_pred CcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHh--
Confidence 68999 78999999999999999999999 899999999999999999999999999999999999999999999987
Q ss_pred CCCcEEEEEEeeecCccccccccchhHHHHHH
Q 044535 80 DMGQIVLPVFYHVNPSDVRKQTGSFGEALAKH 111 (1085)
Q Consensus 80 ~~~~~v~pvfy~v~p~~vr~~~g~~~~~~~~~ 111 (1085)
..+++|+||||+|+|++||+|.|.|+++|..+
T Consensus 104 ~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 104 SGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp TSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred cCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 77889999999999999999999999877643
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=2.9e-23 Score=234.31 Aligned_cols=259 Identities=20% Similarity=0.232 Sum_probs=202.4
Q ss_pred CccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCC-CCCCccccCcccc
Q 044535 660 SITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPD-ISGDMKYLSLSET 737 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~-~~~~L~~L~L~~~ 737 (1085)
+++.|++++|.+..+++ .+.++++|++|++++|......|..++++++|++|++++|... .+|. ...+|+.|++++|
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCC
Confidence 56666777777777754 6888889999999887766556777888899999999887544 4443 3468888999999
Q ss_pred cccccCcc-cccCCCCCEEEccCCccc--ccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccC
Q 044535 738 AIEELPSS-VECLTELTVLRLQKCKRL--KRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELP 814 (1085)
Q Consensus 738 ~i~~lp~~-l~~l~~L~~L~L~~~~~~--~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp 814 (1085)
.+..+|.. +..+++|+.|++++|... +..+..+..+ +|+.|++++|... .+|..+. ++|++|++++|.++.++
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIE 209 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC--SSCSCCBCCSSCCCCCC
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc--CCCCEEECCCCcCCccC
Confidence 99888764 789999999999999875 3566777777 9999999998654 4665543 78999999999999776
Q ss_pred -ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCC-
Q 044535 815 -SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKP- 892 (1085)
Q Consensus 815 -~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~- 892 (1085)
..+..+++|+.|+|++|. ++.+++..+..+++|+.|+|++|.+..+|..+..+++|+.|++++|.++.++...
T Consensus 210 ~~~l~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQ-----IRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSC-----CCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred HHHhcCCCCCCEEECCCCc-----CCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 678999999999999998 7888877889999999999999999999999999999999999999999887322
Q ss_pred --------CCCCCEeeccccccc--cccC-CCCCCCCCCeEEEeCCC
Q 044535 893 --------FSCLTHLNVSYCKRL--QSLQ-EFPSPLRLVNLQAHECI 928 (1085)
Q Consensus 893 --------l~~L~~L~l~~c~~L--~~lp-~l~~~~~L~~L~i~~c~ 928 (1085)
+++|+.|++.+|+.. ...| .+.....|+.|++.+|.
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 356788888888743 1122 24455566667766653
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=7e-24 Score=236.90 Aligned_cols=242 Identities=18% Similarity=0.200 Sum_probs=143.6
Q ss_pred CCccEEecCCCccc---cccccccCCCcccEEEccC-CCCCCccCCcccCCCCccEEEecccCCCccCCCCC---CCccc
Q 044535 659 WSITELDLGETAIE---EVPPAIESLGKLVVLRLDN-CRRLKNLPSSICNLTSLTELALHGCSNITKFPDIS---GDMKY 731 (1085)
Q Consensus 659 ~~L~~L~Ls~~~i~---~lp~~i~~l~~L~~L~L~~-~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~---~~L~~ 731 (1085)
.+++.|+++++.+. .+|..++++++|++|++++ |...+.+|..++++++|++|++++|.....+|..+ .+|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 35667777777776 5888899999999999995 66667888889999999999999876554555432 24445
Q ss_pred cCccccccc-ccCcccccCCCCCEEEccCCcccccccccccCCC-CCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCC
Q 044535 732 LSLSETAIE-ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLK-SLEILYLFGCSKLEGLPEILESMERLETLYLAGTP 809 (1085)
Q Consensus 732 L~L~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 809 (1085)
|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|.....+|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 555555555 4455555555555555555555555555555555 555555555554444555555554 5555555555
Q ss_pred Cc-ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCCCCCEEECCCCCCC-
Q 044535 810 IK-ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLSSLEILGLSGNIFE- 886 (1085)
Q Consensus 810 i~-~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~- 886 (1085)
++ ..|..+..+++|+.|+|++|. ++..++. +..+++|++|+|++|.++ .+|..+..+++|+.|++++|+++
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 282 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNS-----LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSE-----ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCc-----eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc
Confidence 54 334445555555555555555 3322222 445555555555555555 45555555555555555555554
Q ss_pred cCC-CCCCCCCCEeeccccccc
Q 044535 887 SLN-LKPFSCLTHLNVSYCKRL 907 (1085)
Q Consensus 887 ~l~-~~~l~~L~~L~l~~c~~L 907 (1085)
.+| ...+++|+.|++.+|+.+
T Consensus 283 ~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 283 EIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp ECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCCCCccccccChHHhcCCCCc
Confidence 233 344555555555555443
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.6e-22 Score=244.43 Aligned_cols=261 Identities=21% Similarity=0.271 Sum_probs=179.9
Q ss_pred CceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcc
Q 044535 570 NELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCY 649 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~ 649 (1085)
..++.|+++++.++.+|..+. ++|++|+|++|+++.+|. .+++|++|+|++|.+.. +|. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N- 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSN- 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSC-
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCC-
Confidence 368999999999999998765 789999999998887776 56777788887776443 333 4555555555554
Q ss_pred cccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCc
Q 044535 650 SLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDM 729 (1085)
Q Consensus 650 ~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L 729 (1085)
.+..+|. .+++|++|++++|. +..+|.. +++|++|++++| .+..+|..+.+|
T Consensus 112 --------------------~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L 163 (622)
T 3g06_A 112 --------------------PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPALPSEL 163 (622)
T ss_dssp --------------------CCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTC
T ss_pred --------------------cCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCCccCCC
Confidence 4444444 34555555555543 3334432 355666666655 333455555566
Q ss_pred cccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCC
Q 044535 730 KYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTP 809 (1085)
Q Consensus 730 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 809 (1085)
+.|++++|.+..+| ..+++|+.|++++|.+.+ +|. .+++|+.|++++|... .+|.. +++|+.|++++|.
T Consensus 164 ~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~ 232 (622)
T 3g06_A 164 CKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR 232 (622)
T ss_dssp CEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSC
T ss_pred CEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCc
Confidence 66666667777776 446778888888876543 443 2467788888776543 44432 4778888888888
Q ss_pred CcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC
Q 044535 810 IKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 810 i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
++.+| ..+++|+.|+|++|. ++.+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++|.+++..
T Consensus 233 L~~lp---~~l~~L~~L~Ls~N~-----L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 233 LTSLP---VLPSELKELMVSGNR-----LTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CSCCC---CCCTTCCEEECCSSC-----CSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred cCcCC---CCCCcCcEEECCCCC-----CCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcC
Confidence 88877 456788888888887 666665 567888888888888888888888888888888888887654
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=9.1e-24 Score=235.97 Aligned_cols=252 Identities=17% Similarity=0.194 Sum_probs=209.7
Q ss_pred CCceEEecCCCCch---hhhHhhhhccccceecccC-CCCCCCCC-CCCCCCcccEEeccCcccccccCCCCCCccEEec
Q 044535 592 ENLVELDMHHSNLE---HLWEEMQHALNLRRIDLSY-SLHLNETP-DLSSARNLEIMVLDGCYSLIKFPKTSWSITELDL 666 (1085)
Q Consensus 592 ~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~Ls~-~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~L 666 (1085)
.+++.|+|+++.+. .+|..+..+++|++|++++ |.+...+| .+..+++|++|++++|...
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--------------- 114 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS--------------- 114 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE---------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC---------------
Confidence 57899999999988 5788888999999999985 66665666 4777777777777766432
Q ss_pred CCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCccc
Q 044535 667 GETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSV 746 (1085)
Q Consensus 667 s~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l 746 (1085)
..+|..+..+++|++|++++|.....+|..+..+++|++|++++|.... .+|..+
T Consensus 115 -----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l 169 (313)
T 1ogq_A 115 -----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------AIPDSY 169 (313)
T ss_dssp -----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------ECCGGG
T ss_pred -----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------cCCHHH
Confidence 3667778888999999999887777788888888888888888754321 567778
Q ss_pred ccCC-CCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCE
Q 044535 747 ECLT-ELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSL 825 (1085)
Q Consensus 747 ~~l~-~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 825 (1085)
..++ +|+.|++++|.+.+.+|..+..++ |+.|++++|......|..+..+++|+.|++++|.++..+..+..+++|++
T Consensus 170 ~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence 8887 999999999999989999999887 99999999988888899999999999999999999976666889999999
Q ss_pred EEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCCCCCEEECCCCC-CCcCCC
Q 044535 826 LSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLSSLEILGLSGNI-FESLNL 890 (1085)
Q Consensus 826 L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~l~~ 890 (1085)
|+|++|. ++...+..+..+++|+.|+|++|+++ .+|.. ..+++|+.|++++|. +.+.|+
T Consensus 249 L~Ls~N~-----l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 249 LDLRNNR-----IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp EECCSSC-----CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred EECcCCc-----ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 9999999 66444456889999999999999999 56665 889999999999998 555443
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.1e-23 Score=229.65 Aligned_cols=230 Identities=24% Similarity=0.336 Sum_probs=157.7
Q ss_pred CceeEEEeeCCCCCCCCCCC-CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCc
Q 044535 570 NELRYLHWHRYPLKSLPSNF-NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGC 648 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~ 648 (1085)
.+++.|+++++.+..+|..+ .+++|++|+|++|.+..+|..+..+++|++|+|++|.+....+.+..+++|++|++++|
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence 35677777777777777765 67788888888888777777777788888888887766633235777777777777777
Q ss_pred ccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCC
Q 044535 649 YSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGD 728 (1085)
Q Consensus 649 ~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 728 (1085)
.....+|..+.. ..++..+..+++|++|++++|.. ..+|..++++++|++|+|++|
T Consensus 161 ~~~~~~p~~~~~-----------~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N------------ 216 (328)
T 4fcg_A 161 PELTELPEPLAS-----------TDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNS------------ 216 (328)
T ss_dssp TTCCCCCSCSEE-----------EC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESS------------
T ss_pred CCccccChhHhh-----------ccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCC------------
Confidence 666555443221 01122344566677777766543 366666666666666666654
Q ss_pred ccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCC
Q 044535 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 808 (1085)
.+..+|..+..+++|+.|++++|...+.+|..+..+++|+.|++++|.....+|..+..+++|+.|+|++|
T Consensus 217 ---------~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 217 ---------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp ---------CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred ---------CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence 33455666777777777777777777777777777777777777777777777777777777777777776
Q ss_pred CCc-ccCccccCCCCCCEEEccCCC
Q 044535 809 PIK-ELPSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 809 ~i~-~lp~~l~~l~~L~~L~L~~~~ 832 (1085)
.+. .+|.++..+++|+.+++..+.
T Consensus 288 ~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 288 VNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp TTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred CchhhccHHHhhccCceEEeCCHHH
Confidence 644 677777777777777776554
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1e-24 Score=258.50 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=146.0
Q ss_pred ceeEEEeeCCCCC-----CCCCCC-CCCCceEEecCCCCchhh-hHh-hhhcc----ccceecccCCCCCCC----CC-C
Q 044535 571 ELRYLHWHRYPLK-----SLPSNF-NPENLVELDMHHSNLEHL-WEE-MQHAL----NLRRIDLSYSLHLNE----TP-D 633 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~-----~lp~~~-~l~~L~~L~L~~~~i~~l-~~~-~~~l~----~L~~L~Ls~~~~~~~----~~-~ 633 (1085)
+|++|++++|.+. .++..+ .+++|++|+|++|.+... +.. ...+. +|++|++++|.+... ++ .
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST 108 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH
Confidence 5666666666655 233333 456677777777766532 222 22344 577777777665431 22 3
Q ss_pred CCCCCcccEEeccCcccccc--------cCCCCCCccEEecCCCcccc-----ccccccCCCcccEEEccCCCCCCccCC
Q 044535 634 LSSARNLEIMVLDGCYSLIK--------FPKTSWSITELDLGETAIEE-----VPPAIESLGKLVVLRLDNCRRLKNLPS 700 (1085)
Q Consensus 634 l~~l~~L~~L~L~~~~~l~~--------~~~~~~~L~~L~Ls~~~i~~-----lp~~i~~l~~L~~L~L~~~~~~~~lp~ 700 (1085)
+..+++|++|++++|..... +.....+|++|++++|.+.. ++..+..+++|++|++++|......+.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 188 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR 188 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence 56666777777776653211 11223356666666666553 344455566666666666553222121
Q ss_pred ccc-----CCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccc-----cccc
Q 044535 701 SIC-----NLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRV-----SSSI 770 (1085)
Q Consensus 701 ~l~-----~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l-----~~~l 770 (1085)
.+. .+++|++|++++|..... ....++..+..+++|+.|++++|...... +...
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~----------------~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSD----------------NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTT----------------HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHH----------------HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 121 244666666666532221 00113444444555555555555432211 1111
Q ss_pred cCCCCCcEEEeeCCCCCCC----cchhhcCCCCccEEEccCCCCcc-----cCccc-cCCCCCCEEEccCCCchhhhccC
Q 044535 771 CKLKSLEILYLFGCSKLEG----LPEILESMERLETLYLAGTPIKE-----LPSSI-DHLPQLSLLSLENCKNILVFLTN 840 (1085)
Q Consensus 771 ~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~i~~-----lp~~l-~~l~~L~~L~L~~~~~l~~~l~~ 840 (1085)
..+++|++|++++|..... ++..+..+++|++|++++|.++. +...+ ...++|+.|+|++|. ++.
T Consensus 253 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-----l~~ 327 (461)
T 1z7x_W 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-----FTA 327 (461)
T ss_dssp STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-----CBG
T ss_pred cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-----Cch
Confidence 2345555555555533321 34444445555555555555431 11111 122455555555554 222
Q ss_pred Cc----hhhhcCCCCccEEecCCCCCCCC-C----cccCC-CCCCCEEECCCCCCCc-----CC--CCCCCCCCEeeccc
Q 044535 841 LP----LALLSGLCSLTELHLNDCNLLEL-P----SALTC-LSSLEILGLSGNIFES-----LN--LKPFSCLTHLNVSY 903 (1085)
Q Consensus 841 l~----~~~~~~l~~L~~L~Ls~n~l~~l-p----~~l~~-l~~L~~L~L~~n~l~~-----l~--~~~l~~L~~L~l~~ 903 (1085)
.. +..+..+++|++|+|++|.+.+. + ..+.. .++|+.|++++|.++. ++ +..+++|+.|++++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCC
Confidence 11 11233445555555555554421 1 11211 4455555555555542 22 33445555555555
Q ss_pred cc
Q 044535 904 CK 905 (1085)
Q Consensus 904 c~ 905 (1085)
|+
T Consensus 408 N~ 409 (461)
T 1z7x_W 408 NC 409 (461)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.3e-22 Score=224.69 Aligned_cols=197 Identities=28% Similarity=0.506 Sum_probs=100.7
Q ss_pred CccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccc
Q 044535 660 SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAI 739 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i 739 (1085)
.++.|++++|.+..+|..++.+++|++|++++|... .+|..++++++|++|+|++| .+
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n---------------------~l 139 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN---------------------PL 139 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC---------------------CC
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC---------------------cc
Confidence 445555555555666666666666666666665433 56665666666666666553 22
Q ss_pred cccCcccccCCCCCEEEccCCcccccccccccC---------CCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 740 EELPSSVECLTELTVLRLQKCKRLKRVSSSICK---------LKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~---------l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
..+|..+..+++|+.|++++|...+.+|..+.. +++|++|++++|... .+|..+..+++|++|++++|.+
T Consensus 140 ~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp CCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred ccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 344555566666666666666655555554432 455555555544332 4444444455555555555555
Q ss_pred cccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCCCCCEEECCCCC
Q 044535 811 KELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLSSLEILGLSGNI 884 (1085)
Q Consensus 811 ~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~ 884 (1085)
+.+|..+..+++|+.|+|++|.. .+.+| ..+..+++|+.|+|++|++. .+|..+..+++|+.|+|++|+
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~----~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTA----LRNYP-PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTT----CCBCC-CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CcCchhhccCCCCCEEECcCCcc----hhhhH-HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 54444444445555555554441 11122 23444444444444444433 344444444444444444433
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=2.4e-21 Score=234.22 Aligned_cols=256 Identities=21% Similarity=0.227 Sum_probs=182.3
Q ss_pred cccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCC
Q 044535 615 LNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRR 694 (1085)
Q Consensus 615 ~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~ 694 (1085)
.+++.|++++|.+...++.+. ++|++|++++|. +..+|..+.+|++|++++|.+..+|. .+++|++|++++|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~- 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP- 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCC-CCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-
Confidence 357777777776553332343 677777777774 44666667778888888888888887 67888999998864
Q ss_pred CCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCC
Q 044535 695 LKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLK 774 (1085)
Q Consensus 695 ~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~ 774 (1085)
+..+|. .+++|++|++++|. +..+|..+.+|++|++++|.+..+|. .+++|+.|++++|.+.. +| ..++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~ 181 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPS 181 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCC
Confidence 455665 47888888888864 55577777788888888888877775 34678888888876544 44 3467
Q ss_pred CCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccE
Q 044535 775 SLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTE 854 (1085)
Q Consensus 775 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~ 854 (1085)
+|+.|++++|... .+|.. +++|+.|++++|.++.+|.. +++|+.|+|++|. ++.+| ..+++|+.
T Consensus 182 ~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~-----L~~lp----~~l~~L~~ 245 (622)
T 3g06_A 182 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-----LTSLP----VLPSELKE 245 (622)
T ss_dssp TCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSC-----CSCCC----CCCTTCCE
T ss_pred CCcEEECCCCCCC-CCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCc-----cCcCC----CCCCcCcE
Confidence 7888888776543 34432 46778888888887777753 4678888888776 56665 45677888
Q ss_pred EecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC--CCCCCCCCEeeccccccc
Q 044535 855 LHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVSYCKRL 907 (1085)
Q Consensus 855 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L 907 (1085)
|+|++|.++.+|. .+++|+.|+|++|.++.+| +..+++|+.|+|++|+..
T Consensus 246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 246 LMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp EECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred EECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 8888887777776 5677788888888777776 667777777777777644
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=4.6e-24 Score=252.87 Aligned_cols=343 Identities=20% Similarity=0.176 Sum_probs=213.6
Q ss_pred CceeEEEeeCCCCCCCCCC--C-CCCCceEEecCCCCch-----hhhHhhhhccccceecccCCCCCCCCC-C-CCCCCc
Q 044535 570 NELRYLHWHRYPLKSLPSN--F-NPENLVELDMHHSNLE-----HLWEEMQHALNLRRIDLSYSLHLNETP-D-LSSARN 639 (1085)
Q Consensus 570 ~~Lr~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~-l~~l~~ 639 (1085)
++|++|+++++.+...+.. + .+++|++|+|++|.+. .++..+..+++|++|++++|.+....+ . ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~- 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ- 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC-
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh-
Confidence 3556666666555433211 1 4456666666666655 334455555666666666654332211 0 11111
Q ss_pred ccEEeccCcccccccCCCCCCccEEecCCCccc-----cccccccCCCcccEEEccCCCCCCccCCcc-----cCCCCcc
Q 044535 640 LEIMVLDGCYSLIKFPKTSWSITELDLGETAIE-----EVPPAIESLGKLVVLRLDNCRRLKNLPSSI-----CNLTSLT 709 (1085)
Q Consensus 640 L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~-----~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l-----~~l~~L~ 709 (1085)
....+|++|++++|.+. .++..+..+++|++|++++|......+..+ ...++|+
T Consensus 82 ----------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 145 (461)
T 1z7x_W 82 ----------------TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145 (461)
T ss_dssp ----------------STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred ----------------hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcce
Confidence 11113455555555444 345556666666666666655322211111 1244566
Q ss_pred EEEecccCCCccC----CCC---CCCccccCccccccccc-----Ccccc-cCCCCCEEEccCCccccc----ccccccC
Q 044535 710 ELALHGCSNITKF----PDI---SGDMKYLSLSETAIEEL-----PSSVE-CLTELTVLRLQKCKRLKR----VSSSICK 772 (1085)
Q Consensus 710 ~L~L~~~~~~~~~----p~~---~~~L~~L~L~~~~i~~l-----p~~l~-~l~~L~~L~L~~~~~~~~----l~~~l~~ 772 (1085)
+|++++|...... +.. ..+|+.|++++|.+... ...+. .+++|+.|++++|..... ++..+..
T Consensus 146 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 225 (461)
T 1z7x_W 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225 (461)
T ss_dssp EEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHH
T ss_pred EEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHh
Confidence 6666666433211 111 24566666666666532 22222 467999999999987653 5777888
Q ss_pred CCCCcEEEeeCCCCCCCc-----chhhcCCCCccEEEccCCCCcc-----cCccccCCCCCCEEEccCCCchhhhccCCc
Q 044535 773 LKSLEILYLFGCSKLEGL-----PEILESMERLETLYLAGTPIKE-----LPSSIDHLPQLSLLSLENCKNILVFLTNLP 842 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l~~l-----p~~l~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~ 842 (1085)
+++|++|++++|...... +..+..+++|++|++++|.++. ++..+..+++|++|+|++|.-.......+.
T Consensus 226 ~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 305 (461)
T 1z7x_W 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHH
Confidence 999999999998654321 2233468999999999999986 788888899999999999982111111222
Q ss_pred hhhhcCCCCccEEecCCCCCCC-----CCcccCCCCCCCEEECCCCCCCcCC-------C-CCCCCCCEeecccccccc-
Q 044535 843 LALLSGLCSLTELHLNDCNLLE-----LPSALTCLSSLEILGLSGNIFESLN-------L-KPFSCLTHLNVSYCKRLQ- 908 (1085)
Q Consensus 843 ~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l~-------~-~~l~~L~~L~l~~c~~L~- 908 (1085)
.......++|+.|+|++|.++. ++..+..+++|+.|++++|.+++.+ + ...++|+.|++++|..-.
T Consensus 306 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~ 385 (461)
T 1z7x_W 306 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred HHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChh
Confidence 2222345799999999999984 4667788999999999999988753 1 126799999999996432
Q ss_pred ---ccCC-CCCCCCCCeEEEeCCCC
Q 044535 909 ---SLQE-FPSPLRLVNLQAHECIY 929 (1085)
Q Consensus 909 ---~lp~-l~~~~~L~~L~i~~c~~ 929 (1085)
.+|. +..+.+|+.|++++|.-
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred hHHHHHHHHHhCCCccEEECCCCCC
Confidence 4553 45567788999999853
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.9e-21 Score=221.45 Aligned_cols=270 Identities=21% Similarity=0.224 Sum_probs=192.7
Q ss_pred EEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhH-hhhhccccceecccCCCCCCCCCC-CCCCCcccEEeccCcccc
Q 044535 574 YLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWE-EMQHALNLRRIDLSYSLHLNETPD-LSSARNLEIMVLDGCYSL 651 (1085)
Q Consensus 574 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~~~~~~~~~~-l~~l~~L~~L~L~~~~~l 651 (1085)
..+.+++.++.+|..+. ++|++|++++|.+..++. .+..+++|++|++++|.+....+. +.++++|++|++++|
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n--- 110 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN--- 110 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS---
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC---
Confidence 35667778888887653 478888888888887765 577888888888888766655543 666666666666554
Q ss_pred cccCCCCCCccEEecCCCcccccccc-ccCCCcccEEEccCCCCCCccCC--cccCCCCccEEEecccCCCccCCCCCCC
Q 044535 652 IKFPKTSWSITELDLGETAIEEVPPA-IESLGKLVVLRLDNCRRLKNLPS--SICNLTSLTELALHGCSNITKFPDISGD 728 (1085)
Q Consensus 652 ~~~~~~~~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~--~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 728 (1085)
.+..+|.. ++++++|++|++++|.. ..+|. .+.++++|++|++++|..+..++
T Consensus 111 ------------------~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~----- 166 (353)
T 2z80_A 111 ------------------YLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQ----- 166 (353)
T ss_dssp ------------------CCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEEC-----
T ss_pred ------------------cCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccC-----
Confidence 44666665 77888888888888654 45554 57788888888888864333221
Q ss_pred ccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch-hhcCCCCccEEEccC
Q 044535 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLAG 807 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~~ 807 (1085)
|..+..+++|+.|++++|...+..|..+..+++|++|++++|.. ..+|. .+..+++|+.|++++
T Consensus 167 --------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 167 --------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp --------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEES
T ss_pred --------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCC
Confidence 34567778888888888888777788888888999999988765 44444 345688899999999
Q ss_pred CCCcccCc----cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcc-cCCCCCCCEEECCC
Q 044535 808 TPIKELPS----SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSA-LTCLSSLEILGLSG 882 (1085)
Q Consensus 808 ~~i~~lp~----~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 882 (1085)
|.++.++. .....+.++.++++++.-....+..+|. .+..+++|+.|+|++|+++.+|.. +..+++|+.|++++
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CccccccccccccccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 88886542 1234667888888887622222223333 467788888888888888888876 47888888888888
Q ss_pred CCCCc
Q 044535 883 NIFES 887 (1085)
Q Consensus 883 n~l~~ 887 (1085)
|.+..
T Consensus 311 N~~~~ 315 (353)
T 2z80_A 311 NPWDC 315 (353)
T ss_dssp SCBCC
T ss_pred CCccC
Confidence 87664
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.6e-21 Score=215.65 Aligned_cols=235 Identities=27% Similarity=0.387 Sum_probs=153.9
Q ss_pred EEecCCCccccccccccCCCcccEEEccCCCCCCccCCc-ccCCCCccEEEecccCCCcc--CC---CCCCCccccCccc
Q 044535 663 ELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSS-ICNLTSLTELALHGCSNITK--FP---DISGDMKYLSLSE 736 (1085)
Q Consensus 663 ~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~--~p---~~~~~L~~L~L~~ 736 (1085)
.++++++.+..+|..+. ++|++|++++|.. ..+|.. +.++++|++|+|++|..... .+ ....+|+.|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l-~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCC-CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCcc-CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 34444444444444332 3455555554432 233322 34455555555554432110 01 0123444555555
Q ss_pred ccccccCcccccCCCCCEEEccCCccccccc-ccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc--c
Q 044535 737 TAIEELPSSVECLTELTVLRLQKCKRLKRVS-SSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE--L 813 (1085)
Q Consensus 737 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~--l 813 (1085)
|.+..+|..+..+++|+.|++++|......+ ..+..+++|++|++++|......+..+..+++|++|++++|.++. +
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 6666777778888888888888887655443 457778888888888887766677777888888888888888774 6
Q ss_pred CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCcCC---
Q 044535 814 PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFESLN--- 889 (1085)
Q Consensus 814 p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~--- 889 (1085)
|..+..+++|+.|+|++|. ++.+++..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|.++...
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQ-----LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp CSCCTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred hhHHhhCcCCCEEECCCCC-----cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 7778888888888888887 666666667788888888888888887654 5777888888888888887754
Q ss_pred CCCCC-CCCEeeccccc
Q 044535 890 LKPFS-CLTHLNVSYCK 905 (1085)
Q Consensus 890 ~~~l~-~L~~L~l~~c~ 905 (1085)
+..++ +|+.|++++|+
T Consensus 243 ~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCCCCTTCCEEECTTCC
T ss_pred HHhhhccCCEEEccCCC
Confidence 44553 67777777665
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=8.7e-21 Score=223.63 Aligned_cols=237 Identities=25% Similarity=0.275 Sum_probs=169.6
Q ss_pred cEEeccCcccccccCCCC-CCccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCC
Q 044535 641 EIMVLDGCYSLIKFPKTS-WSITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSN 718 (1085)
Q Consensus 641 ~~L~L~~~~~l~~~~~~~-~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 718 (1085)
..++.++. .+..+|..+ .++++|++++|.+..++ ..+.++++|++|+|++|......|..+.++++|++|+|++|
T Consensus 57 ~~v~c~~~-~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-- 133 (452)
T 3zyi_A 57 SKVVCTRR-GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-- 133 (452)
T ss_dssp CEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS--
T ss_pred cEEEECCC-CcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC--
Confidence 44554443 344555543 46777777777777663 45777777777777776655555566777777777777765
Q ss_pred CccCCCCCCCccccCcccccccccCc-ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch-hhcC
Q 044535 719 ITKFPDISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILES 796 (1085)
Q Consensus 719 ~~~~p~~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~ 796 (1085)
.+..+|. .+..+++|+.|+|++|.+....+..+.++++|+.|++++|+.+..++. .+..
T Consensus 134 -------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 194 (452)
T 3zyi_A 134 -------------------WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194 (452)
T ss_dssp -------------------CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred -------------------cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC
Confidence 3444443 366777888888888776655555677788888888888777766654 4777
Q ss_pred CCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCC
Q 044535 797 MERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSL 875 (1085)
Q Consensus 797 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 875 (1085)
+++|++|++++|.++.+|. +..+++|+.|+|++|. ++.+++..+.++++|+.|+|++|.+..+ +..+..+++|
T Consensus 195 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNH-----FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp CTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSC-----CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccccccc-ccccccccEEECcCCc-----CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 8888888888888887763 6777888888888887 6667666788888888888888888765 4567778888
Q ss_pred CEEECCCCCCCcCC---CCCCCCCCEeeccccc
Q 044535 876 EILGLSGNIFESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
+.|+|++|+++.++ +..+++|+.|+|++|+
T Consensus 269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 88888888888776 5667788888888765
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.1e-21 Score=216.44 Aligned_cols=247 Identities=21% Similarity=0.268 Sum_probs=150.7
Q ss_pred eEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHh-hhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccc
Q 044535 573 RYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSL 651 (1085)
Q Consensus 573 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l 651 (1085)
+.++++++.++.+|..+ +++|++|+|++|.+..+|.. +..+++|++|++++|.+...
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--------------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK--------------------- 67 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE---------------------
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc---------------------
Confidence 35667777777777654 25677777777777666544 45566666666665543211
Q ss_pred cccCCCCCCccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccc
Q 044535 652 IKFPKTSWSITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKY 731 (1085)
Q Consensus 652 ~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~ 731 (1085)
...+..+..+++|++|++++|. +..+|..+..+++|++|++++|.
T Consensus 68 --------------------~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-------------- 112 (306)
T 2z66_A 68 --------------------GCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-------------- 112 (306)
T ss_dssp --------------------EEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE--------------
T ss_pred --------------------cCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc--------------
Confidence 0112223334444444444432 22233334444444444444321
Q ss_pred cCcccccccccC--cccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCC-CcchhhcCCCCccEEEccCC
Q 044535 732 LSLSETAIEELP--SSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLE-GLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 732 L~L~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~ 808 (1085)
+..++ ..+..+++|+.|++++|...+..+..+..+++|++|++++|.... .+|..+..+++|++|++++|
T Consensus 113 -------l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 113 -------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp -------EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred -------ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 11221 134445556666666555555555556666666666666665443 35666677777777777777
Q ss_pred CCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-CCcccCCCC-CCCEEECCCCCC
Q 044535 809 PIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-LPSALTCLS-SLEILGLSGNIF 885 (1085)
Q Consensus 809 ~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~-~L~~L~L~~n~l 885 (1085)
.++.+ |..+..+++|+.|+|++|. ++.++...+..+++|+.|+|++|.+.. .|..+..++ +|+.|++++|.+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNN-----FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSC-----CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCc-----cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 77765 5567778888888888887 666766667888889999999998885 456677774 899999999988
Q ss_pred CcC
Q 044535 886 ESL 888 (1085)
Q Consensus 886 ~~l 888 (1085)
+..
T Consensus 261 ~~~ 263 (306)
T 2z66_A 261 ACT 263 (306)
T ss_dssp ECS
T ss_pred ecc
Confidence 753
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=7.8e-21 Score=223.23 Aligned_cols=237 Identities=22% Similarity=0.265 Sum_probs=164.1
Q ss_pred cEEeccCcccccccCCCC-CCccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCC
Q 044535 641 EIMVLDGCYSLIKFPKTS-WSITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSN 718 (1085)
Q Consensus 641 ~~L~L~~~~~l~~~~~~~-~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~ 718 (1085)
..++..+. .+..+|..+ .+++.|+|++|.+..++ ..+.++++|++|+|++|......+..+.++++|++|+|++|
T Consensus 46 ~~v~c~~~-~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-- 122 (440)
T 3zyj_A 46 SKVICVRK-NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-- 122 (440)
T ss_dssp CEEECCSC-CCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS--
T ss_pred CEEEeCCC-CcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC--
Confidence 34444432 344555443 36677777777777665 45667777777777776544444455666777777766664
Q ss_pred CccCCCCCCCccccCcccccccccCc-ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch-hhcC
Q 044535 719 ITKFPDISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILES 796 (1085)
Q Consensus 719 ~~~~p~~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~ 796 (1085)
.+..+|. .+..+++|+.|+|++|.+....+..+..+++|++|++++|+.+..++. .+.+
T Consensus 123 -------------------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~ 183 (440)
T 3zyj_A 123 -------------------RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183 (440)
T ss_dssp -------------------CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT
T ss_pred -------------------cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc
Confidence 4444443 466777788888887776655555677778888888877766666554 5677
Q ss_pred CCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCC
Q 044535 797 MERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSL 875 (1085)
Q Consensus 797 l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 875 (1085)
+++|++|++++|.++.+|. +..+++|+.|+|++|. ++.+++..+.++++|+.|+|++|.+..+ +..+..+++|
T Consensus 184 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNH-----LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp CSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred ccccCeecCCCCcCccccc-cCCCcccCEEECCCCc-----cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 7888888888888877774 6777888888888887 6666666777788888888888888765 4467778888
Q ss_pred CEEECCCCCCCcCC---CCCCCCCCEeeccccc
Q 044535 876 EILGLSGNIFESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
+.|+|++|+++.++ +..+++|+.|+|++|+
T Consensus 258 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 88888888887776 5667778888887765
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=6.7e-22 Score=225.22 Aligned_cols=268 Identities=21% Similarity=0.199 Sum_probs=200.5
Q ss_pred CCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcccccccCCCCCCccEEecCCC
Q 044535 591 PENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGET 669 (1085)
Q Consensus 591 l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~ 669 (1085)
+......+++++.++.+|..+. ++|++|++++|.+....+ .+.++++|++|++++|.
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------------------- 87 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-------------------- 87 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--------------------
T ss_pred CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--------------------
Confidence 3444567888888888887554 478888888877655444 36666666666665553
Q ss_pred ccccc-cccccCCCcccEEEccCCCCCCccCCc-ccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCc--c
Q 044535 670 AIEEV-PPAIESLGKLVVLRLDNCRRLKNLPSS-ICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPS--S 745 (1085)
Q Consensus 670 ~i~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~-l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~--~ 745 (1085)
+..+ |..+.++++|++|++++|... .+|.. ++++++|++|++++| .+..+|. .
T Consensus 88 -l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n---------------------~l~~l~~~~~ 144 (353)
T 2z80_A 88 -INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGN---------------------PYKTLGETSL 144 (353)
T ss_dssp -CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTC---------------------CCSSSCSSCS
T ss_pred -cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCC---------------------CCcccCchhh
Confidence 3444 345778888888888886543 44443 677788888877764 3445554 5
Q ss_pred cccCCCCCEEEccCCcccccc-cccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccc-cCCCCC
Q 044535 746 VECLTELTVLRLQKCKRLKRV-SSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSI-DHLPQL 823 (1085)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l-~~l~~L 823 (1085)
+..+++|+.|++++|...+.+ +..+..+++|++|++++|......|..+..+++|++|++++|.++.+|..+ ..+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 788999999999999644444 567889999999999999887777888999999999999999998887654 458999
Q ss_pred CEEEccCCCchhhhccCCchhh---hcCCCCccEEecCCCCCCC-----CCcccCCCCCCCEEECCCCCCCcCC---CCC
Q 044535 824 SLLSLENCKNILVFLTNLPLAL---LSGLCSLTELHLNDCNLLE-----LPSALTCLSSLEILGLSGNIFESLN---LKP 892 (1085)
Q Consensus 824 ~~L~L~~~~~l~~~l~~l~~~~---~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l~---~~~ 892 (1085)
+.|++++|. ++.++... ....+.++.++|+++.+.. +|..+..+++|+.|++++|+++.++ +..
T Consensus 225 ~~L~L~~n~-----l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~ 299 (353)
T 2z80_A 225 ECLELRDTD-----LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR 299 (353)
T ss_dssp EEEEEESCB-----CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cEEECCCCc-----cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc
Confidence 999999998 55444322 2346778888998888773 6778889999999999999999887 477
Q ss_pred CCCCCEeecccccccc
Q 044535 893 FSCLTHLNVSYCKRLQ 908 (1085)
Q Consensus 893 l~~L~~L~l~~c~~L~ 908 (1085)
+++|+.|++++|+...
T Consensus 300 l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CCCCCEEEeeCCCccC
Confidence 8899999999886443
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=9.9e-22 Score=220.03 Aligned_cols=239 Identities=19% Similarity=0.170 Sum_probs=185.3
Q ss_pred CccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCccccc
Q 044535 660 SITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETA 738 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~ 738 (1085)
+|++|++++|.+..++ ..+..+++|++|++++|......| +..+++|++|++++|.. ..++. ..+|+.|++++|.
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l-~~l~~-~~~L~~L~l~~n~ 110 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELLV-GPSIETLHAANNN 110 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE-EEEEE-CTTCCEEECCSSC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc-ccccC-CCCcCEEECCCCc
Confidence 4455555555556554 457777788888887765443333 66777888888877643 33332 2677778888888
Q ss_pred ccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhh-cCCCCccEEEccCCCCcccCccc
Q 044535 739 IEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEIL-ESMERLETLYLAGTPIKELPSSI 817 (1085)
Q Consensus 739 i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~i~~lp~~l 817 (1085)
+..++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|......+..+ ..+++|++|++++|.++.+|..
T Consensus 111 l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 187 (317)
T 3o53_A 111 ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ- 187 (317)
T ss_dssp CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-
T ss_pred cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-
Confidence 8777643 47889999999999887777788889999999999987776656655 4789999999999999988654
Q ss_pred cCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCC--cCC--CCCC
Q 044535 818 DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFE--SLN--LKPF 893 (1085)
Q Consensus 818 ~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~l~--~~~l 893 (1085)
..+++|++|+|++|. ++.+|+. +..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+. .++ +..+
T Consensus 188 ~~l~~L~~L~Ls~N~-----l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 188 VVFAKLKTLDLSSNK-----LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp CCCTTCCEEECCSSC-----CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred cccccCCEEECCCCc-----CCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 358999999999998 7777765 78899999999999999999999999999999999999998 333 7778
Q ss_pred CCCCEeeccccccccccC
Q 044535 894 SCLTHLNVSYCKRLQSLQ 911 (1085)
Q Consensus 894 ~~L~~L~l~~c~~L~~lp 911 (1085)
++|+.|++.+|+.++..+
T Consensus 262 ~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 262 QRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHHHHHHHHHHHHHHSSS
T ss_pred ccceEEECCCchhccCCc
Confidence 899999999888776543
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=5.7e-20 Score=202.50 Aligned_cols=216 Identities=25% Similarity=0.318 Sum_probs=126.6
Q ss_pred cEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccc
Q 044535 662 TELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEE 741 (1085)
Q Consensus 662 ~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~ 741 (1085)
+.++.+++.+..+|..+ .++|++|++++|......+..+..+++|++|++++|. +..
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~---------------------l~~ 70 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV---------------------LAR 70 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---------------------CCE
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc---------------------cce
Confidence 34555555556665433 3466666666654433333445566666666665542 222
Q ss_pred c-CcccccCCCCCEEEccCCcccccc-cccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-ccc
Q 044535 742 L-PSSVECLTELTVLRLQKCKRLKRV-SSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SID 818 (1085)
Q Consensus 742 l-p~~l~~l~~L~~L~L~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~ 818 (1085)
+ |..+..+++|++|++++|...+.+ |..+..+++|++|++++|......|..+..+++|++|++++|.++.++. .+.
T Consensus 71 ~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence 2 334555566666666666533332 4555566666666666665555555556666666666666666665554 355
Q ss_pred CCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCCEEECCCCCCCcCC---CCCCC
Q 044535 819 HLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLEILGLSGNIFESLN---LKPFS 894 (1085)
Q Consensus 819 ~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l~---~~~l~ 894 (1085)
.+++|+.|+|++|. ++.++...+..+++|+.|+|++|.+..+ |..+..+++|+.|++++|.++.++ +..++
T Consensus 151 ~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 151 DLGNLTHLFLHGNR-----ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred cCCCccEEECCCCc-----ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 66666666666665 5555555566666666666666666654 556666666677777666666665 55666
Q ss_pred CCCEeeccccc
Q 044535 895 CLTHLNVSYCK 905 (1085)
Q Consensus 895 ~L~~L~l~~c~ 905 (1085)
+|+.|++++|+
T Consensus 226 ~L~~L~l~~N~ 236 (285)
T 1ozn_A 226 ALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEeccCCC
Confidence 66666666654
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.84 E-value=6e-20 Score=216.47 Aligned_cols=123 Identities=20% Similarity=0.231 Sum_probs=70.1
Q ss_pred eeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhh-hHhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcc
Q 044535 572 LRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHL-WEEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCY 649 (1085)
Q Consensus 572 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~ 649 (1085)
.+.++..+..+..+|..+ +++|++|+|++|++..+ +..+..+++|++|+|++|.+....+ .+.++++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456677777777777654 35778888888887765 3456777777777777776554443 25555555555555543
Q ss_pred cccccCCCCCCccEEecCCCcccccccc-ccCCCcccEEEccCCCCCCccCCcccCCCCccEEEeccc
Q 044535 650 SLIKFPKTSWSITELDLGETAIEEVPPA-IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGC 716 (1085)
Q Consensus 650 ~l~~~~~~~~~L~~L~Ls~~~i~~lp~~-i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~ 716 (1085)
+..+|.. +..+++|++|+|++|......+..+.++++|++|++++|
T Consensus 135 ---------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 135 ---------------------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp ---------------------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred ---------------------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 2333322 444555555555554332222223444555555555444
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=6.8e-20 Score=215.19 Aligned_cols=244 Identities=22% Similarity=0.283 Sum_probs=133.4
Q ss_pred eeEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhh-HhhhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcc
Q 044535 572 LRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLW-EEMQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCY 649 (1085)
Q Consensus 572 Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~ 649 (1085)
.+.++..+..+..+|..+. .+++.|+|++|++..++ ..+..+++|++|+|++|.+....+ .+.++++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4567777777888887653 67888888888887665 457778888888888876655443 36666666666666653
Q ss_pred cccccCCCCCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCC
Q 044535 650 SLIKFPKTSWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGD 728 (1085)
Q Consensus 650 ~l~~~~~~~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 728 (1085)
+..+|. .+..+++|++|++++|......+..+.++++|++|++++|+.+..++.
T Consensus 124 ---------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---- 178 (440)
T 3zyj_A 124 ---------------------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE---- 178 (440)
T ss_dssp ---------------------CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT----
T ss_pred ---------------------CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc----
Confidence 333433 345555555555555443322233455555666666555443333221
Q ss_pred ccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCC
Q 044535 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 808 (1085)
..+..+++|+.|++++|.+. .+| .+..+++|+.|+|++|......|..+..+++|+.|+|++|
T Consensus 179 ---------------~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 179 ---------------GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp ---------------TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ---------------chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 12333444444444444322 222 1344445555555554444433444555555555555555
Q ss_pred CCcccC-ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC
Q 044535 809 PIKELP-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 809 ~i~~lp-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 863 (1085)
.++.++ ..+..+++|+.|+|++|. ++.++...+..+++|+.|+|++|.+.
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNN-----LTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSC-----CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ceeEEChhhhcCCCCCCEEECCCCC-----CCccChhHhccccCCCEEEcCCCCcc
Confidence 555432 344555555555555555 45555555555555566665555543
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.1e-21 Score=216.82 Aligned_cols=197 Identities=24% Similarity=0.286 Sum_probs=85.1
Q ss_pred CCCcccEEEccCCCCCCccCCcc--cCCCCccEEEecccCCCccCCCCC--------CCccccCcccccccccC-ccccc
Q 044535 680 SLGKLVVLRLDNCRRLKNLPSSI--CNLTSLTELALHGCSNITKFPDIS--------GDMKYLSLSETAIEELP-SSVEC 748 (1085)
Q Consensus 680 ~l~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p~~~--------~~L~~L~L~~~~i~~lp-~~l~~ 748 (1085)
++++|++|++++|...+.+|..+ ..+++|++|+|++|..... |..+ .+|++|++++|.+..++ ..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45566666666655544555544 5556666666655432221 2110 12222222223333332 34445
Q ss_pred CCCCCEEEccCCccccc--ccccc--cCCCCCcEEEeeCCCCCC--Ccc-hhhcCCCCccEEEccCCCCcccC--ccccC
Q 044535 749 LTELTVLRLQKCKRLKR--VSSSI--CKLKSLEILYLFGCSKLE--GLP-EILESMERLETLYLAGTPIKELP--SSIDH 819 (1085)
Q Consensus 749 l~~L~~L~L~~~~~~~~--l~~~l--~~l~~L~~L~L~~~~~l~--~lp-~~l~~l~~L~~L~L~~~~i~~lp--~~l~~ 819 (1085)
+++|+.|++++|+..+. ++..+ ..+++|++|++++|.... .++ ..+..+++|++|++++|.++..+ ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 55555555555544332 12222 444555555555543321 111 12234445555555555544332 22333
Q ss_pred CCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCC
Q 044535 820 LPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 820 l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 886 (1085)
+++|+.|+|++|. ++.+|.... ++|+.|+|++|+++.+|. +..+++|+.|++++|.++
T Consensus 252 l~~L~~L~Ls~N~-----l~~ip~~~~---~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-----LKQVPKGLP---AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CTTCCEEECTTSC-----CSSCCSSCC---SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred cCCCCEEECCCCc-----cChhhhhcc---CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 4444444444444 333333211 444444444444444433 444444444444444443
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=2.1e-21 Score=216.79 Aligned_cols=244 Identities=19% Similarity=0.198 Sum_probs=175.4
Q ss_pred ceeEEEeeCCCCCCCCCCCCCCCceEEecCCCCch--hhhHhhh-------hccccceecccCCCCCCCCCC-C--CCCC
Q 044535 571 ELRYLHWHRYPLKSLPSNFNPENLVELDMHHSNLE--HLWEEMQ-------HALNLRRIDLSYSLHLNETPD-L--SSAR 638 (1085)
Q Consensus 571 ~Lr~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~--~l~~~~~-------~l~~L~~L~Ls~~~~~~~~~~-l--~~l~ 638 (1085)
+|++|+++++.+ .+|..+. ..|++|+|++|.+. .+|..+. .+++|++|++++|.+....|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 456666666666 5554331 12666666666664 2343333 466666666666665544443 2 4555
Q ss_pred cccEEeccCcccccccCCCCCCccEEecCCCccccccccccCC-----CcccEEEccCCCCCCccCCcccCCCCccEEEe
Q 044535 639 NLEIMVLDGCYSLIKFPKTSWSITELDLGETAIEEVPPAIESL-----GKLVVLRLDNCRRLKNLPSSICNLTSLTELAL 713 (1085)
Q Consensus 639 ~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~i~~lp~~i~~l-----~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L 713 (1085)
+|++|+++ +|.+..+|..++.+ ++|++|++++|......|..++++++|++|++
T Consensus 122 ~L~~L~Ls---------------------~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 180 (312)
T 1wwl_A 122 DLNILNLR---------------------NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180 (312)
T ss_dssp CCSEEEEE---------------------SCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEEC
T ss_pred CccEEEcc---------------------CCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEEC
Confidence 55555444 44556666666665 89999999998776666678888999999999
Q ss_pred cccCCCccCCCCCCCccccCcccccccccCccc--ccCCCCCEEEccCCcccc--ccc-ccccCCCCCcEEEeeCCCCCC
Q 044535 714 HGCSNITKFPDISGDMKYLSLSETAIEELPSSV--ECLTELTVLRLQKCKRLK--RVS-SSICKLKSLEILYLFGCSKLE 788 (1085)
Q Consensus 714 ~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l--~~l~~L~~L~L~~~~~~~--~l~-~~l~~l~~L~~L~L~~~~~l~ 788 (1085)
++|...+.. .+|..+ ..+++|+.|++++|.+.. .++ ..+..+++|++|++++|....
T Consensus 181 s~N~l~~~~------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 181 SDNPELGER------------------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp CSCTTCHHH------------------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCcCcch------------------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 887533211 123333 789999999999998763 233 334678999999999998777
Q ss_pred Ccc-hhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC
Q 044535 789 GLP-EILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE 864 (1085)
Q Consensus 789 ~lp-~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~ 864 (1085)
..| ..+..+++|++|++++|.++.+|..+. ++|+.|+|++|. ++.+|. +..+++|+.|+|++|+++.
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-----l~~~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-----LDRNPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-----CCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred ccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-----CCCChh--HhhCCCCCEEeccCCCCCC
Confidence 664 456678999999999999999998876 899999999999 788865 8899999999999999875
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=5.2e-21 Score=226.82 Aligned_cols=233 Identities=19% Similarity=0.156 Sum_probs=175.7
Q ss_pred CccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCccccc
Q 044535 660 SITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETA 738 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~ 738 (1085)
+|++|++++|.+..++ ..++.+++|++|+|++|......| ++.+++|++|+|++|.. ..+|.. .+|+.|++++|.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-~~l~~~-~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-QELLVG-PSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEE-EEEEEC-TTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcC-CCCCCC-CCcCEEECcCCc
Confidence 4555666666666664 468888888888888876544444 77788888888888743 333322 677788888888
Q ss_pred ccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhc-CCCCccEEEccCCCCcccCccc
Q 044535 739 IEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILE-SMERLETLYLAGTPIKELPSSI 817 (1085)
Q Consensus 739 i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~i~~lp~~l 817 (1085)
+..++.. .+++|+.|++++|.+.+..|..++.+++|+.|++++|......|..+. .+++|+.|+|++|.++.+|. .
T Consensus 111 l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~ 187 (487)
T 3oja_A 111 ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-Q 187 (487)
T ss_dssp CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-C
T ss_pred CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-c
Confidence 8777653 467888888888888877777788888888888888877776666665 68888888888888887754 3
Q ss_pred cCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCC--cCC--CCCC
Q 044535 818 DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFE--SLN--LKPF 893 (1085)
Q Consensus 818 ~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~l~--~~~l 893 (1085)
..+++|+.|+|++|. ++.+|+. +..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+. .++ +..+
T Consensus 188 ~~l~~L~~L~Ls~N~-----l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 188 VVFAKLKTLDLSSNK-----LAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp CCCTTCCEEECCSSC-----CCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ccCCCCCEEECCCCC-----CCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 358888888888888 6777664 77888888888888888888888888888888888888887 333 5666
Q ss_pred CCCCEeeccccc
Q 044535 894 SCLTHLNVSYCK 905 (1085)
Q Consensus 894 ~~L~~L~l~~c~ 905 (1085)
+.|+.|.+..+.
T Consensus 262 ~~L~~l~~~~~~ 273 (487)
T 3oja_A 262 QRVQTVAKQTVK 273 (487)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCcEEeccccc
Confidence 777777766444
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.6e-19 Score=197.25 Aligned_cols=212 Identities=23% Similarity=0.296 Sum_probs=171.8
Q ss_pred cccCCC-CCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCc
Q 044535 652 IKFPKT-SWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDM 729 (1085)
Q Consensus 652 ~~~~~~-~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L 729 (1085)
..+|.. ..+|++|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++|..+..++
T Consensus 24 ~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~------ 97 (285)
T 1ozn_A 24 QAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD------ 97 (285)
T ss_dssp SSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC------
T ss_pred ccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC------
Confidence 344432 3477888888888888875 58899999999999987665557788899999999999875333221
Q ss_pred cccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCC
Q 044535 730 KYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTP 809 (1085)
Q Consensus 730 ~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 809 (1085)
|..+..+++|+.|++++|...+..|..+..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 98 -------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 98 -------------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp -------------TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence 4457778899999999988877777778889999999999987766556668889999999999999
Q ss_pred CcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCc
Q 044535 810 IKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 810 i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 887 (1085)
++.+|. .+..+++|+.|+|++|. ++.+++..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|.+..
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNR-----VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ccccCHHHhcCccccCEEECCCCc-----ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 998876 48889999999999998 666766678889999999999999998774 58899999999999998764
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=3.1e-21 Score=216.00 Aligned_cols=256 Identities=19% Similarity=0.143 Sum_probs=184.6
Q ss_pred CceEEecCCCCchhhhHh-hhhccccceecccCCCCCCCCC-CCCCCCcccEEeccCcccccccCCCCCCccEEecCCCc
Q 044535 593 NLVELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNETP-DLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETA 670 (1085)
Q Consensus 593 ~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~ 670 (1085)
.+..++++.+.+...+.. +..+++|++|++++|.+....| .+..+++|++|++++|..
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-------------------- 70 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-------------------- 70 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC--------------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC--------------------
Confidence 356667777777755544 4556788888888887666554 367777777777776643
Q ss_pred cccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCc-ccccC
Q 044535 671 IEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPS-SVECL 749 (1085)
Q Consensus 671 i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~-~l~~l 749 (1085)
..+++ +..+++|++|++++|. +..+| ..++|++|++++|......+..+.+|+.|++++|.+..++. .+..+
T Consensus 71 -~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l 143 (317)
T 3o53_A 71 -YETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143 (317)
T ss_dssp -EEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGG
T ss_pred -Ccchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhcc
Confidence 22222 5556666666666543 22222 23566666666665544444555666777777777776644 67888
Q ss_pred CCCCEEEccCCcccccccccc-cCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEc
Q 044535 750 TELTVLRLQKCKRLKRVSSSI-CKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSL 828 (1085)
Q Consensus 750 ~~L~~L~L~~~~~~~~l~~~l-~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L 828 (1085)
++|+.|++++|.+.+..+..+ ..+++|++|++++|.... ++. ...+++|++|++++|.++.+|..+..+++|+.|+|
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEEC
Confidence 999999999998877666665 478999999999986543 333 33488999999999999999888889999999999
Q ss_pred cCCCchhhhccCCchhhhcCCCCccEEecCCCCCC--CCCcccCCCCCCCEEECCCC
Q 044535 829 ENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL--ELPSALTCLSSLEILGLSGN 883 (1085)
Q Consensus 829 ~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n 883 (1085)
++|. ++.+|. .+..+++|+.|+|++|.+. .+|..+..+++|+.|+++++
T Consensus 222 ~~N~-----l~~l~~-~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 222 RNNK-----LVLIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTSC-----CCEECT-TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCc-----ccchhh-HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 9998 667765 4788899999999999998 57778888899999988853
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=3.2e-21 Score=236.15 Aligned_cols=395 Identities=15% Similarity=0.116 Sum_probs=261.2
Q ss_pred ccccccccccEEEEecCCcccCc--ccccce-e---ecccccccCCceeEEEeeCCCCCCCC-CCC-C-C-CCceEEecC
Q 044535 531 DAFVGMHQLRLLKFFSSSYREGY--VEEDKV-H---LCQGLEILSNELRYLHWHRYPLKSLP-SNF-N-P-ENLVELDMH 600 (1085)
Q Consensus 531 ~~f~~~~~Lr~L~l~~~~~~~~~--~~~~~~-~---~~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~-~-l-~~L~~L~L~ 600 (1085)
..+..+++|+.|++.++...... ...... . ....+....++|++|+++++.+.... ..+ . + .+|++|+|+
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 45667889999999886431100 000000 0 00111112357999999988654311 111 2 2 349999998
Q ss_pred CCC-ch--hhhHhhhhccccceecccCCCCCCCCC----C-CCCCCcccEEeccCcccc----ccc---CCCCCCccEEe
Q 044535 601 HSN-LE--HLWEEMQHALNLRRIDLSYSLHLNETP----D-LSSARNLEIMVLDGCYSL----IKF---PKTSWSITELD 665 (1085)
Q Consensus 601 ~~~-i~--~l~~~~~~l~~L~~L~Ls~~~~~~~~~----~-l~~l~~L~~L~L~~~~~l----~~~---~~~~~~L~~L~ 665 (1085)
+|. +. .++.....+++|++|+|++|.+..... . +..+++|++|++++|... ..+ .....+|+.|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 876 22 344555688999999999987544321 1 356788999999887643 111 12456899999
Q ss_pred cCCCccccccccccCCCcccEEEccCCCCC---CccCCcccCCCCccEEEecccCCCccCCCC---CCCccccCcccccc
Q 044535 666 LGETAIEEVPPAIESLGKLVVLRLDNCRRL---KNLPSSICNLTSLTELALHGCSNITKFPDI---SGDMKYLSLSETAI 739 (1085)
Q Consensus 666 Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~---~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~---~~~L~~L~L~~~~i 739 (1085)
+++|.+..+|..+..+++|++|+++.+... ...+..+..+++|+.|+++++ ....+|.. ..+|++|++++|.+
T Consensus 227 L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp CSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred ccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcC
Confidence 999999999888889999999999864333 234455777889999999874 33344443 45788889998886
Q ss_pred c--ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeC----------CCCCCC--cchhhcCCCCccEEEc
Q 044535 740 E--ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFG----------CSKLEG--LPEILESMERLETLYL 805 (1085)
Q Consensus 740 ~--~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~----------~~~l~~--lp~~l~~l~~L~~L~L 805 (1085)
. .++..+..+++|+.|+++++.....++.....+++|++|++++ |+.... ++.....+++|++|++
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 5 2334467889999999985544444555556788999999994 555442 3444566899999999
Q ss_pred cCCCCc-ccCcccc-CCCCCCEEEccCCCchhhhccCCch-----hhhcCCCCccEEecCCCC--CCC-CCc-ccCCCCC
Q 044535 806 AGTPIK-ELPSSID-HLPQLSLLSLENCKNILVFLTNLPL-----ALLSGLCSLTELHLNDCN--LLE-LPS-ALTCLSS 874 (1085)
Q Consensus 806 ~~~~i~-~lp~~l~-~l~~L~~L~L~~~~~l~~~l~~l~~-----~~~~~l~~L~~L~Ls~n~--l~~-lp~-~l~~l~~ 874 (1085)
+.+.++ ..+..+. .+++|+.|++++|..-. .++..|. ..+.++++|+.|+|++|. ++. .+. ....+++
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n-~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREE-RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCS-CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCc-cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 888877 2333444 38899999997432000 1444321 235678999999998765 442 222 2345788
Q ss_pred CCEEECCCCCCCcCC----CCCCCCCCEeeccccccccc--cCC-CCCCCCCCeEEEeCCC
Q 044535 875 LEILGLSGNIFESLN----LKPFSCLTHLNVSYCKRLQS--LQE-FPSPLRLVNLQAHECI 928 (1085)
Q Consensus 875 L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~~L~~--lp~-l~~~~~L~~L~i~~c~ 928 (1085)
|+.|++++|.+++.. +..+++|+.|+|++|+ ++. ++. ...+.+|+.|++++|.
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 999999999987643 5788999999999998 332 232 2345567899999998
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=1.1e-18 Score=191.28 Aligned_cols=155 Identities=19% Similarity=0.159 Sum_probs=79.2
Q ss_pred cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc--cCccccCCCCC
Q 044535 746 VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE--LPSSIDHLPQL 823 (1085)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~--lp~~l~~l~~L 823 (1085)
+..+++|+.|++++|.+.+..+..+.++++|++|++++|......+..+..+++|++|++++|.++. +|..+..+++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L 151 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC
Confidence 3444445555555444444444444455555555555544433333344555555555555555553 44555555555
Q ss_pred CEEEccCCCchhhhccCCchhhhcCCCCcc----EEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC---CCCCCCC
Q 044535 824 SLLSLENCKNILVFLTNLPLALLSGLCSLT----ELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN---LKPFSCL 896 (1085)
Q Consensus 824 ~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L 896 (1085)
+.|+|++|. ++.++...+..+++|+ .|++++|.+..++.......+|+.|++++|.++.++ +..+++|
T Consensus 152 ~~L~Ls~N~-----l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 152 EHLDLSSNK-----IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CEEECCSSC-----CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CEEECCCCC-----CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence 555555555 4444433333333333 566666666655544444445666666666666554 3445566
Q ss_pred CEeeccccc
Q 044535 897 THLNVSYCK 905 (1085)
Q Consensus 897 ~~L~l~~c~ 905 (1085)
+.|++++|+
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 666666544
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=3.2e-19 Score=211.43 Aligned_cols=222 Identities=14% Similarity=0.082 Sum_probs=181.8
Q ss_pred ccccccccC----CCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCC-CCCCCccccCcccccccccCccc
Q 044535 672 EEVPPAIES----LGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFP-DISGDMKYLSLSETAIEELPSSV 746 (1085)
Q Consensus 672 ~~lp~~i~~----l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~~~~L~~L~L~~~~i~~lp~~l 746 (1085)
..+|..+.. +++|++|+|++|......|..++.+++|++|+|++|......| ..+.+|+.|++++|.+..+|.
T Consensus 20 ~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~-- 97 (487)
T 3oja_A 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV-- 97 (487)
T ss_dssp TTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE--
T ss_pred hhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC--
Confidence 344554444 4489999999987766667789999999999999987654443 234578889999999988774
Q ss_pred ccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc-cCcccc-CCCCCC
Q 044535 747 ECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE-LPSSID-HLPQLS 824 (1085)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~-~l~~L~ 824 (1085)
.++|+.|++++|.+.+..+. .+++|+.|++++|......|..++.+++|+.|+|++|.++. .|..+. .+++|+
T Consensus 98 --~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 --GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp --CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred --CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 38999999999987766554 46889999999998887778888899999999999999985 455554 789999
Q ss_pred EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC--CCCCCCCCEeecc
Q 044535 825 LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN--LKPFSCLTHLNVS 902 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~--~~~l~~L~~L~l~ 902 (1085)
.|+|++|. ++.++. ...+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| +..+++|+.|+++
T Consensus 173 ~L~Ls~N~-----l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~ 245 (487)
T 3oja_A 173 HLNLQYNF-----IYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR 245 (487)
T ss_dssp EEECTTSC-----CCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECT
T ss_pred EEecCCCc-----cccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcC
Confidence 99999998 666654 45689999999999999999888999999999999999999887 7778899999999
Q ss_pred ccccc
Q 044535 903 YCKRL 907 (1085)
Q Consensus 903 ~c~~L 907 (1085)
+|+..
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 88755
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=4e-18 Score=185.97 Aligned_cols=199 Identities=24% Similarity=0.311 Sum_probs=125.8
Q ss_pred CccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccc
Q 044535 660 SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAI 739 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i 739 (1085)
+.+.++++++.+..+|..+. ++|++|++++|......+..+.++++|++|+|++|. +
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l 73 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK---------------------L 73 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC---------------------C
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc---------------------c
Confidence 34567777777777776553 567777777765443333456667777777776642 2
Q ss_pred cccCcc-cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-c
Q 044535 740 EELPSS-VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-I 817 (1085)
Q Consensus 740 ~~lp~~-l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l 817 (1085)
..+|.. +..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++|.++.+|.. +
T Consensus 74 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 333332 35566777777777665554444556667777777776665555555566677777777777777666543 5
Q ss_pred cCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCC
Q 044535 818 DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 818 ~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 886 (1085)
..+++|+.|+|++|. ++.++...+..+++|+.|+|++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 154 ~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQ-----LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSC-----CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCcccceeEecCCc-----CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 666777777777666 556665556666677777777776666554 3566666666666666654
No 79
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=7.7e-21 Score=232.74 Aligned_cols=358 Identities=16% Similarity=0.100 Sum_probs=231.1
Q ss_pred ccccccEEEEecCCcccCcccccceeecccccc-cCCceeEEEeeCCCC-C--CCCCCC-CCCCceEEecCCCCchh---
Q 044535 535 GMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEI-LSNELRYLHWHRYPL-K--SLPSNF-NPENLVELDMHHSNLEH--- 606 (1085)
Q Consensus 535 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~~Lr~L~l~~~~l-~--~lp~~~-~l~~L~~L~L~~~~i~~--- 606 (1085)
.+++|+.|+++++.+.. .....+.. .+++|++|++++|.. . .++... .+++|++|+|++|.+..
T Consensus 110 ~~~~L~~L~L~~~~i~~--------~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSD--------LDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HCTTCCEEEEESCBCCH--------HHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCS
T ss_pred hCCCCCeEEeeccEecH--------HHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcch
Confidence 56778888887764311 01111211 223477888777651 1 111111 45778888888776542
Q ss_pred --hhHhhhhccccceecccCCCCCCC----CCC-CCCCCcccEEeccCccccc--ccCCCCCCccEEecCCCcc----cc
Q 044535 607 --LWEEMQHALNLRRIDLSYSLHLNE----TPD-LSSARNLEIMVLDGCYSLI--KFPKTSWSITELDLGETAI----EE 673 (1085)
Q Consensus 607 --l~~~~~~l~~L~~L~Ls~~~~~~~----~~~-l~~l~~L~~L~L~~~~~l~--~~~~~~~~L~~L~Ls~~~i----~~ 673 (1085)
++.....+++|++|++++|..... ++. +..+++|++|++++|.... .......+|++|+++.+.. ..
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 261 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE 261 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTT
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHH
Confidence 444556777888888877765421 111 4567778888887765321 1122345777777764322 23
Q ss_pred ccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccC----CCCCCCccccCccccccc--ccCcccc
Q 044535 674 VPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKF----PDISGDMKYLSLSETAIE--ELPSSVE 747 (1085)
Q Consensus 674 lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~----p~~~~~L~~L~L~~~~i~--~lp~~l~ 747 (1085)
.+..+..+++|+.|+++++ ....+|..+..+++|++|+|++|...... .....+|+.|+++ +.+. .++....
T Consensus 262 ~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ 339 (592)
T ss_dssp SSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH
T ss_pred HHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH
Confidence 3455677788888888774 34556666677888888888887632211 1345677777777 3332 3444557
Q ss_pred cCCCCCEEEccC----------Cccccc--ccccccCCCCCcEEEeeCCCCCCCcchhhcC-CCCccEEEcc----CCCC
Q 044535 748 CLTELTVLRLQK----------CKRLKR--VSSSICKLKSLEILYLFGCSKLEGLPEILES-MERLETLYLA----GTPI 810 (1085)
Q Consensus 748 ~l~~L~~L~L~~----------~~~~~~--l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~-l~~L~~L~L~----~~~i 810 (1085)
.+++|++|++++ |...+. ++.....+++|++|+++.+......+..+.. +++|+.|+++ .+.+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 789999999995 544332 2333456899999999766665555555554 8899999996 5667
Q ss_pred cccC------ccccCCCCCCEEEccCCCchhhhccC-CchhhhcCCCCccEEecCCCCCCC--CCcccCCCCCCCEEECC
Q 044535 811 KELP------SSIDHLPQLSLLSLENCKNILVFLTN-LPLALLSGLCSLTELHLNDCNLLE--LPSALTCLSSLEILGLS 881 (1085)
Q Consensus 811 ~~lp------~~l~~l~~L~~L~L~~~~~l~~~l~~-l~~~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~ 881 (1085)
+..| ..+..+++|+.|+|+.|.+. ++. ........+++|+.|+|++|.++. ++..+..+++|+.|+++
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~---l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGG---LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGG---CCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCC---ccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 6543 33667999999999876631 111 122233468899999999999884 56667889999999999
Q ss_pred CCCCCcCC----CCCCCCCCEeeccccc
Q 044535 882 GNIFESLN----LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 882 ~n~l~~l~----~~~l~~L~~L~l~~c~ 905 (1085)
+|.++... ...+++|+.|+|++|+
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 99986532 4578999999999998
No 80
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.78 E-value=1.5e-20 Score=180.95 Aligned_cols=122 Identities=17% Similarity=0.303 Sum_probs=84.6
Q ss_pred CccccccCchhHHHHHHHHh--CCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhcc
Q 044535 1 FRGEDTRSNFTSHLYAALCR--AKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECKD 77 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~--~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~~ 77 (1085)
|+|+|++ |+.||+.+|++ +|+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.|+..++.+..
T Consensus 17 y~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~ 94 (146)
T 3ub2_A 17 HSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAP 94 (146)
T ss_dssp CCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSS
T ss_pred CChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHh
Confidence 7899976 79999999998 699999999 999999999999999999999999999999999999999999999874
Q ss_pred cCCCCcEEEEEEeeecCcc----ccccccchhHHHHHHHHhcCCChhHHHHHHHHH
Q 044535 78 TTDMGQIVLPVFYHVNPSD----VRKQTGSFGEALAKHEKYSSKTKPKVLKWRAAL 129 (1085)
Q Consensus 78 ~~~~~~~v~pvfy~v~p~~----vr~~~g~~~~~~~~~~~~~~~~~~~v~~w~~al 129 (1085)
. ..+ .||||||+|++++ +|....... ..++..|....+.|.+|++|+
T Consensus 95 ~-~~~-~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 95 G-AEG-CTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp S-SSS-EEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred h-cCC-cEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence 1 333 6789999998554 454432211 123444444557788888764
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=4.3e-18 Score=187.41 Aligned_cols=197 Identities=26% Similarity=0.321 Sum_probs=110.0
Q ss_pred CccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccc
Q 044535 660 SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAI 739 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i 739 (1085)
++++++++++.+..+|..+. ++|+.|++++|......|..+..+++|++|+|++|. +
T Consensus 11 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~---------------------l 67 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---------------------L 67 (290)
T ss_dssp TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC---------------------C
T ss_pred CccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc---------------------c
Confidence 34444444555555555443 455666666654443334445555566665555532 2
Q ss_pred cccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-cc
Q 044535 740 EELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-ID 818 (1085)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~ 818 (1085)
..++.. ..+++|+.|++++|.+. .+|..+..+++|+.|++++|......+..+..+++|++|++++|.++.+|.. +.
T Consensus 68 ~~~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 68 TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CEEECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CcccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 222221 34555566666555433 4444455555666666665554444445556666666666666666655543 35
Q ss_pred CCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCC
Q 044535 819 HLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 819 ~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 886 (1085)
.+++|+.|+|++|. ++.+|...+..+++|+.|+|++|+++.+|..+..+++|+.|+|++|.+.
T Consensus 146 ~l~~L~~L~L~~N~-----l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 146 PTPKLEKLSLANNN-----LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCTTCCEEECTTSC-----CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCCCEEECCCCc-----CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 56666666666666 5556655556666666666666666666666666666666666666553
No 82
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=1.4e-20 Score=230.67 Aligned_cols=393 Identities=15% Similarity=0.125 Sum_probs=248.5
Q ss_pred ccccccccccEEEEecCCcccCcccc--c-ceee---cccccccCCceeEEEeeCCCCCCCC-CCC--CCCCceEEecCC
Q 044535 531 DAFVGMHQLRLLKFFSSSYREGYVEE--D-KVHL---CQGLEILSNELRYLHWHRYPLKSLP-SNF--NPENLVELDMHH 601 (1085)
Q Consensus 531 ~~f~~~~~Lr~L~l~~~~~~~~~~~~--~-~~~~---~~~l~~l~~~Lr~L~l~~~~l~~lp-~~~--~l~~L~~L~L~~ 601 (1085)
..+..+++|+.|++.++......... . .... ...+....++|++|+++++.+.... ..+ .+++|++|+|++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 34667899999999987531100000 0 0000 0111222357999999998754321 112 467999999998
Q ss_pred C-Cchh--hhHhhhhccccceecccCCCCCCCCC----C-CCCCCcccEEeccCcc-cc-----cccCCCCCCccEEecC
Q 044535 602 S-NLEH--LWEEMQHALNLRRIDLSYSLHLNETP----D-LSSARNLEIMVLDGCY-SL-----IKFPKTSWSITELDLG 667 (1085)
Q Consensus 602 ~-~i~~--l~~~~~~l~~L~~L~Ls~~~~~~~~~----~-l~~l~~L~~L~L~~~~-~l-----~~~~~~~~~L~~L~Ls 667 (1085)
| .+.. ++.....+++|++|++++|.+....+ . ...+++|++|++++|. .+ ..+.....+|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 5553 56666789999999999887443322 2 2367899999999885 11 1112234688899988
Q ss_pred CC-ccccccccccCCCcccEEEccCCCC------CCccCCcccCCCCccEE-EecccCCCccCCC---CCCCccccCccc
Q 044535 668 ET-AIEEVPPAIESLGKLVVLRLDNCRR------LKNLPSSICNLTSLTEL-ALHGCSNITKFPD---ISGDMKYLSLSE 736 (1085)
Q Consensus 668 ~~-~i~~lp~~i~~l~~L~~L~L~~~~~------~~~lp~~l~~l~~L~~L-~L~~~~~~~~~p~---~~~~L~~L~L~~ 736 (1085)
+| .+..++..+..+++|+.|+++.|.. +..++..+.++++|+.| .+.+. ....++. ...+|+.|++++
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTT
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccC
Confidence 87 5666777788888899888776542 12233456677888877 33322 1223333 346788888888
Q ss_pred ccccc--cCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCC--------CCCCC--cchhhcCCCCccEEE
Q 044535 737 TAIEE--LPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGC--------SKLEG--LPEILESMERLETLY 804 (1085)
Q Consensus 737 ~~i~~--lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~--------~~l~~--lp~~l~~l~~L~~L~ 804 (1085)
|.+.. ++..+..+++|+.|++++|.....++.....+++|++|++++| ..... +......+++|+.|.
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~ 378 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVL 378 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHH
Confidence 88652 3344668899999999988322233333345888999999553 22221 122233578899998
Q ss_pred ccCCCCccc-Cccc-cCCCCCCEEEcc-----CCCchhhhccCCch-----hhhcCCCCccEEecCCCCCCC-CCcccC-
Q 044535 805 LAGTPIKEL-PSSI-DHLPQLSLLSLE-----NCKNILVFLTNLPL-----ALLSGLCSLTELHLNDCNLLE-LPSALT- 870 (1085)
Q Consensus 805 L~~~~i~~l-p~~l-~~l~~L~~L~L~-----~~~~l~~~l~~l~~-----~~~~~l~~L~~L~Ls~n~l~~-lp~~l~- 870 (1085)
+..+.++.. +..+ ..+++|+.|+|+ +|.. ++..|. ..+..+++|+.|+|++ .++. .+..+.
T Consensus 379 ~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~----l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 379 YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY----LTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp EEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT----TTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred HhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc----ccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 888887632 2233 358899999998 3443 332221 1356788999999977 5552 223333
Q ss_pred CCCCCCEEECCCCCCCcCC----CCCCCCCCEeeccccccccc-cC-CCCCCCCCCeEEEeCCCC
Q 044535 871 CLSSLEILGLSGNIFESLN----LKPFSCLTHLNVSYCKRLQS-LQ-EFPSPLRLVNLQAHECIY 929 (1085)
Q Consensus 871 ~l~~L~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~~L~~-lp-~l~~~~~L~~L~i~~c~~ 929 (1085)
.+++|+.|++++|.+++.. ...+++|+.|+|++|+.-.. +. ....+.+|+.|++++|+.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3788999999999887654 25688999999999986211 11 123356788999999975
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=4.5e-18 Score=181.98 Aligned_cols=204 Identities=21% Similarity=0.255 Sum_probs=112.2
Q ss_pred ccccCCCCCCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCC-cccCCCCccEEEecccCCCccCCCCCCC
Q 044535 651 LIKFPKTSWSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPS-SICNLTSLTELALHGCSNITKFPDISGD 728 (1085)
Q Consensus 651 l~~~~~~~~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 728 (1085)
+..+|....+|++|++++|.+..+|. .+..+++|++|++++|..+..++. .+.++++|++|++++|+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~---------- 92 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN---------- 92 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT----------
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC----------
Confidence 43444422245555555555555554 355555566666655543333332 344555555555554211
Q ss_pred ccccCcccccccccC-cccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCcc---EEE
Q 044535 729 MKYLSLSETAIEELP-SSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLE---TLY 804 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~---~L~ 804 (1085)
+..+| ..+..+++|+.|++++|.+.+ +|. +..+++|+ .|+
T Consensus 93 ----------l~~i~~~~f~~l~~L~~L~l~~n~l~~-------------------------lp~-~~~l~~L~~L~~L~ 136 (239)
T 2xwt_C 93 ----------LTYIDPDALKELPLLKFLGIFNTGLKM-------------------------FPD-LTKVYSTDIFFILE 136 (239)
T ss_dssp ----------CCEECTTSEECCTTCCEEEEEEECCCS-------------------------CCC-CTTCCBCCSEEEEE
T ss_pred ----------eeEcCHHHhCCCCCCCEEeCCCCCCcc-------------------------ccc-cccccccccccEEE
Confidence 12222 223444445555554444322 333 34444444 555
Q ss_pred ccCC-CCcccCc-cccCCCCCC-EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCC-CCCCC-cccCCC-CCCCEE
Q 044535 805 LAGT-PIKELPS-SIDHLPQLS-LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCN-LLELP-SALTCL-SSLEIL 878 (1085)
Q Consensus 805 L~~~-~i~~lp~-~l~~l~~L~-~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L 878 (1085)
+++| .++.+|. .+..+++|+ .|++++|. ++.+|...+.. ++|+.|+|++|+ +..+| ..+..+ ++|+.|
T Consensus 137 l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-----l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-----FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EESCTTCCEECTTTTTTTBSSEEEEECCSCC-----CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred CCCCcchhhcCcccccchhcceeEEEcCCCC-----CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 5555 5555543 255556666 66666665 44555544444 677777777774 77664 456777 788888
Q ss_pred ECCCCCCCcCCCCCCCCCCEeecccccc
Q 044535 879 GLSGNIFESLNLKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 879 ~L~~n~l~~l~~~~l~~L~~L~l~~c~~ 906 (1085)
++++|.++.++...+++|+.|++.++..
T Consensus 211 ~l~~N~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 211 DVSQTSVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp ECTTCCCCCCCCTTCTTCSEEECTTC--
T ss_pred ECCCCccccCChhHhccCceeeccCccC
Confidence 8888888888766788888888887754
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.7e-17 Score=180.91 Aligned_cols=172 Identities=28% Similarity=0.370 Sum_probs=132.8
Q ss_pred ccccCcccccccccCc-ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccC
Q 044535 729 MKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAG 807 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 807 (1085)
++.|++++|.+..+|. .+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|++|++++
T Consensus 39 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 118 (270)
T 2o6q_A 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDR 118 (270)
T ss_dssp CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCC
Confidence 4444444455555554 577888999999988877655445567888899999988876665556678888899999988
Q ss_pred CCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCC
Q 044535 808 TPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIF 885 (1085)
Q Consensus 808 ~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l 885 (1085)
|.++.++. .+..+++|++|+|++|. ++.++...+..+++|+.|+|++|.++.++. .+..+++|+.|++++|.+
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 119 NQLKSLPPRVFDSLTKLTYLSLGYNE-----LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccCeeCHHHhCcCcCCCEEECCCCc-----CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 88887765 46788888888888887 777877778888888888888888887765 477888888888888888
Q ss_pred CcCC---CCCCCCCCEeeccccc
Q 044535 886 ESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 886 ~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
+.++ +..+++|+.|+|++|+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CcCCHHHhccccCCCEEEecCCC
Confidence 8876 5567778888887765
No 85
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=1.8e-20 Score=229.49 Aligned_cols=355 Identities=17% Similarity=0.149 Sum_probs=241.6
Q ss_pred cccccccEEEEecCCcccCcccccceeecccccccCCceeEEEeeCC-CCCC--CCCCC-CCCCceEEecCCCCchh---
Q 044535 534 VGMHQLRLLKFFSSSYREGYVEEDKVHLCQGLEILSNELRYLHWHRY-PLKS--LPSNF-NPENLVELDMHHSNLEH--- 606 (1085)
Q Consensus 534 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~Lr~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~~~i~~--- 606 (1085)
..+++|+.|+++++.+.. ..+..+....++|++|++++| .+.. ++... .+++|++|+|++|.+..
T Consensus 102 ~~~~~L~~L~L~~~~~~~--------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTD--------DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHCTTCCEEEEESCBCCH--------HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCG
T ss_pred HhCCCCCeEEeeCcEEcH--------HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcch
Confidence 467899999999875421 111222212358999999998 4443 44444 68899999999998653
Q ss_pred --hhHhhhhccccceecccCCCCCCCCC-----C-CCCCCcccEEeccCcccccccCC---CCCCccEEecCCC------
Q 044535 607 --LWEEMQHALNLRRIDLSYSLHLNETP-----D-LSSARNLEIMVLDGCYSLIKFPK---TSWSITELDLGET------ 669 (1085)
Q Consensus 607 --l~~~~~~l~~L~~L~Ls~~~~~~~~~-----~-l~~l~~L~~L~L~~~~~l~~~~~---~~~~L~~L~Ls~~------ 669 (1085)
++.....+++|++|++++|. ..+. . +..+++|++|++++|..+..++. ...+|++|+++.+
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 251 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRP 251 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCH
T ss_pred HHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccch
Confidence 33344578899999999986 2222 1 24579999999999955443332 3468999995544
Q ss_pred -ccccccccccCCCcccEE-EccCCCCCCccCCcccCCCCccEEEecccCCCcc-C---CCCCCCccccCccccccc--c
Q 044535 670 -AIEEVPPAIESLGKLVVL-RLDNCRRLKNLPSSICNLTSLTELALHGCSNITK-F---PDISGDMKYLSLSETAIE--E 741 (1085)
Q Consensus 670 -~i~~lp~~i~~l~~L~~L-~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~-~---p~~~~~L~~L~L~~~~i~--~ 741 (1085)
.+..++..+.++++|+.| .+.+. ....+|..+..+++|++|+|++|..... + .....+|+.|+++++ +. .
T Consensus 252 ~~~~~l~~~l~~~~~L~~Ls~~~~~-~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~ 329 (594)
T 2p1m_B 252 DVYSGLSVALSGCKELRCLSGFWDA-VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAG 329 (594)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCBTC-CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHH
T ss_pred hhHHHHHHHHhcCCCcccccCCccc-chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHH
Confidence 455677788899999999 44432 2344555555789999999999873221 1 224568899999887 43 2
Q ss_pred cCcccccCCCCCEEEccCC--------cccc-cccccc-cCCCCCcEEEeeCCCCCCCcchhhc-CCCCccEEEcc--C-
Q 044535 742 LPSSVECLTELTVLRLQKC--------KRLK-RVSSSI-CKLKSLEILYLFGCSKLEGLPEILE-SMERLETLYLA--G- 807 (1085)
Q Consensus 742 lp~~l~~l~~L~~L~L~~~--------~~~~-~l~~~l-~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~--~- 807 (1085)
++.....+++|+.|++.+| ...+ .....+ ..+++|+.|.+..+......+..+. .+++|+.|+++ +
T Consensus 330 l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~ 409 (594)
T 2p1m_B 330 LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESST
T ss_pred HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccC
Confidence 3333456899999999543 2221 111122 3489999998776655544444443 68999999999 4
Q ss_pred ---CCCcccCc------cccCCCCCCEEEccCCCchhhhccCCchhhhc-CCCCccEEecCCCCCCC--CCcccCCCCCC
Q 044535 808 ---TPIKELPS------SIDHLPQLSLLSLENCKNILVFLTNLPLALLS-GLCSLTELHLNDCNLLE--LPSALTCLSSL 875 (1085)
Q Consensus 808 ---~~i~~lp~------~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~-~l~~L~~L~Ls~n~l~~--lp~~l~~l~~L 875 (1085)
+.++..|. .+..+++|+.|+|++ . ++......+. .+++|+.|+|++|.++. ++.....+++|
T Consensus 410 ~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~-----l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L 483 (594)
T 2p1m_B 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-L-----LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSL 483 (594)
T ss_dssp TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-S-----CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTC
T ss_pred CCcccccCCchhhHHHHHHhhCCCccEEeecC-c-----ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCc
Confidence 55664432 356789999999977 3 2222222333 48899999999999873 22223668999
Q ss_pred CEEECCCCCCCcCC----CCCCCCCCEeecccccc
Q 044535 876 EILGLSGNIFESLN----LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~----~~~l~~L~~L~l~~c~~ 906 (1085)
+.|+|++|.++..+ ...+++|+.|++++|+.
T Consensus 484 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 484 RKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 99999999996543 45689999999999986
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=7.7e-18 Score=184.47 Aligned_cols=208 Identities=24% Similarity=0.301 Sum_probs=159.5
Q ss_pred ccCCCC-CCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCcc
Q 044535 653 KFPKTS-WSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMK 730 (1085)
Q Consensus 653 ~~~~~~-~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~ 730 (1085)
.+|..+ .+|++|++++|.+..++. .+.++++|++|++++|......+..+.++++|++|++++|.
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~------------- 87 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP------------- 87 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-------------
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-------------
Confidence 344433 357777777777777766 67788888888888876544444567778888888887753
Q ss_pred ccCcccccccccC-cccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCC-CcchhhcCCCCccEEEccCC
Q 044535 731 YLSLSETAIEELP-SSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLE-GLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 731 ~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~ 808 (1085)
+..++ ..+..+++|+.|++++|......+..+..+++|++|++++|.... .+|..+..+++|++|++++|
T Consensus 88 --------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 88 --------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp --------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred --------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 33333 457788899999999988777666678889999999999987765 36888999999999999999
Q ss_pred CCcccCc-cccCCCCCC----EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcc-cCCCCCCCEEECCC
Q 044535 809 PIKELPS-SIDHLPQLS----LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSA-LTCLSSLEILGLSG 882 (1085)
Q Consensus 809 ~i~~lp~-~l~~l~~L~----~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 882 (1085)
.++.++. .+..+++|+ .|++++|. ++.++...+.. .+|+.|+|++|.++.+|.. +..+++|+.|++++
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-----l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-----MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSC-----CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCc-----ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 9987763 455555555 89999998 66776654443 4899999999999988765 68899999999999
Q ss_pred CCCCc
Q 044535 883 NIFES 887 (1085)
Q Consensus 883 n~l~~ 887 (1085)
|.++.
T Consensus 234 N~~~c 238 (276)
T 2z62_A 234 NPWDC 238 (276)
T ss_dssp SCBCC
T ss_pred Ccccc
Confidence 98874
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=3.6e-18 Score=182.68 Aligned_cols=204 Identities=21% Similarity=0.302 Sum_probs=162.0
Q ss_pred CccCCCCCCCccccCcccccccccCc-ccccCCCCCEEEccCCcccccc-cccccCCCCCcEEEeeCCCCCCCc-chhhc
Q 044535 719 ITKFPDISGDMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRV-SSSICKLKSLEILYLFGCSKLEGL-PEILE 795 (1085)
Q Consensus 719 ~~~~p~~~~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l-~~~l~~l~~L~~L~L~~~~~l~~l-p~~l~ 795 (1085)
++.+|....+++.|++++|.++.+|. .+..+++|+.|++++|..++.+ +..+.++++|++|++++|+.+..+ +..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 44444433356666666677777766 6889999999999999744444 457889999999999984444444 46788
Q ss_pred CCCCccEEEccCCCCcccCccccCCCCCC---EEEccCC-CchhhhccCCchhhhcCCCCcc-EEecCCCCCCCCCcccC
Q 044535 796 SMERLETLYLAGTPIKELPSSIDHLPQLS---LLSLENC-KNILVFLTNLPLALLSGLCSLT-ELHLNDCNLLELPSALT 870 (1085)
Q Consensus 796 ~l~~L~~L~L~~~~i~~lp~~l~~l~~L~---~L~L~~~-~~l~~~l~~l~~~~~~~l~~L~-~L~Ls~n~l~~lp~~l~ 870 (1085)
.+++|++|++++|.++.+|. +..+++|+ .|++++| . ++.++...+.++++|+ .|++++|.+..+|....
T Consensus 103 ~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~-----l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPY-----MTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp CCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTT-----CCEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred CCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcc-----hhhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 99999999999999999997 88888888 9999999 6 7778887889999999 99999999999887655
Q ss_pred CCCCCCEEECCCCC-CCcCC---CCCC-CCCCEeeccccccccccCCCCCCCCCCeEEEeCCCCC
Q 044535 871 CLSSLEILGLSGNI-FESLN---LKPF-SCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAHECIYL 930 (1085)
Q Consensus 871 ~l~~L~~L~L~~n~-l~~l~---~~~l-~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~~c~~L 930 (1085)
..++|+.|++++|. ++.++ +..+ ++|+.|++++|+ ++.+|.. ...+|+.|++.++..|
T Consensus 177 ~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh-HhccCceeeccCccCC
Confidence 55899999999994 99886 6777 899999999854 5677754 4556778988887653
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.3e-17 Score=181.50 Aligned_cols=168 Identities=26% Similarity=0.280 Sum_probs=115.5
Q ss_pred cccCccccccccc-CcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCC
Q 044535 730 KYLSLSETAIEEL-PSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 730 ~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 808 (1085)
+.|++++|.+..+ |..+..+++|+.|++++|.+... +.. ..+++|++|++++|.. ..+|..+..+++|+.|++++|
T Consensus 34 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N 110 (290)
T 1p9a_G 34 TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFN 110 (290)
T ss_dssp CEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCC-SSCCCCTTTCTTCCEEECCSS
T ss_pred CEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcC-CcCchhhccCCCCCEEECCCC
Confidence 3333334445444 34577778888888888775543 322 5677788888877644 456667777777888888888
Q ss_pred CCcccC-ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcc-cCCCCCCCEEECCCCCCC
Q 044535 809 PIKELP-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSA-LTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 809 ~i~~lp-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~ 886 (1085)
.++.+| ..+..+++|+.|+|++|. ++.++...+..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+++
T Consensus 111 ~l~~l~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 111 RLTSLPLGALRGLGELQELYLKGNE-----LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCCCCSSTTTTCTTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCcccCHHHHcCCCCCCEEECCCCC-----CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 777776 356777778888888777 6677776677777788888887777777654 466777777777777777
Q ss_pred cCC--CCCCCCCCEeeccccc
Q 044535 887 SLN--LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 887 ~l~--~~~l~~L~~L~l~~c~ 905 (1085)
.+| +..+++|+.|+|.+|+
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCC
T ss_pred ccChhhcccccCCeEEeCCCC
Confidence 776 4445566666666654
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.2e-17 Score=183.67 Aligned_cols=190 Identities=23% Similarity=0.403 Sum_probs=96.2
Q ss_pred cEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccc
Q 044535 662 TELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEE 741 (1085)
Q Consensus 662 ~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~ 741 (1085)
++|+++++.+..++ .+..+++|++|++++|. +..++. +..+++|++|++++|. +..
T Consensus 44 ~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~---------------------l~~ 99 (308)
T 1h6u_A 44 TTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNP---------------------LKN 99 (308)
T ss_dssp CEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCC---------------------CSC
T ss_pred CEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCc---------------------CCC
Confidence 33333333444444 45566666666666653 333443 5556666666665542 222
Q ss_pred cCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCC
Q 044535 742 LPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLP 821 (1085)
Q Consensus 742 lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~ 821 (1085)
++ .+..+++|+.|++++|.... ++. +..+++|++|++++|.... ++. +..+++|+.|++++|.++.++. +..++
T Consensus 100 ~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 173 (308)
T 1h6u_A 100 VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTP-LANLS 173 (308)
T ss_dssp CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChh-hcCCC
Confidence 22 34555566666666655433 222 4555555555555554332 222 4455555555555555555444 55555
Q ss_pred CCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC
Q 044535 822 QLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 822 ~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
+|+.|++++|. ++.++. +..+++|+.|+|++|.+..++. +..+++|+.|++++|.++..+
T Consensus 174 ~L~~L~l~~n~-----l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 174 KLTTLKADDNK-----ISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp TCCEEECCSSC-----CCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCC
T ss_pred CCCEEECCCCc-----cCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCC
Confidence 55555555555 444443 4455555555555555555442 455555555555555544443
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.2e-18 Score=196.76 Aligned_cols=251 Identities=19% Similarity=0.238 Sum_probs=163.5
Q ss_pred CceEEecCCCCchhhhHhhhhc--cccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCCc
Q 044535 593 NLVELDMHHSNLEHLWEEMQHA--LNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGETA 670 (1085)
Q Consensus 593 ~L~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~~ 670 (1085)
.++.|+++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|....
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~------------------ 107 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV------------------ 107 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECH------------------
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCH------------------
Confidence 4677888877776 4556666 88999999998877777777777888888777765220
Q ss_pred cccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCC
Q 044535 671 IEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLT 750 (1085)
Q Consensus 671 i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~ 750 (1085)
..++..+..+++|++|++++|......|..++.+++|++|++++|..++. ..++..+..++
T Consensus 108 -~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~------------------~~l~~~~~~~~ 168 (336)
T 2ast_B 108 -STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------------FALQTLLSSCS 168 (336)
T ss_dssp -HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH------------------HHHHHHHHHCT
T ss_pred -HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH------------------HHHHHHHhcCC
Confidence 12666677888888888888865556666677788888888887632221 02445566778
Q ss_pred CCCEEEccCC-ccccc-ccccccCCC-CCcEEEeeCCC--CC-CCcchhhcCCCCccEEEccCCC-Cc-ccCccccCCCC
Q 044535 751 ELTVLRLQKC-KRLKR-VSSSICKLK-SLEILYLFGCS--KL-EGLPEILESMERLETLYLAGTP-IK-ELPSSIDHLPQ 822 (1085)
Q Consensus 751 ~L~~L~L~~~-~~~~~-l~~~l~~l~-~L~~L~L~~~~--~l-~~lp~~l~~l~~L~~L~L~~~~-i~-~lp~~l~~l~~ 822 (1085)
+|++|++++| ..... ++..+..++ +|++|++++|. .. ..+|..+..+++|+.|++++|. ++ ..+..+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 8888888887 54432 455667777 88888888773 22 4456666777888888888877 44 45556777778
Q ss_pred CCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCC-CCCCEEECCCCCCCcCC
Q 044535 823 LSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCL-SSLEILGLSGNIFESLN 889 (1085)
Q Consensus 823 L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l-~~L~~L~L~~n~l~~l~ 889 (1085)
|+.|+|++|.. +.......+..+++|+.|++++| +.. ..+..+ .+|..|++++|.+++..
T Consensus 249 L~~L~l~~~~~----~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 249 LQHLSLSRCYD----IIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp CCEEECTTCTT----CCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTT
T ss_pred CCEeeCCCCCC----CCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCcccc
Confidence 88888877752 11111123556777777777777 221 011111 12444445666666543
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.74 E-value=3.2e-19 Score=205.74 Aligned_cols=211 Identities=18% Similarity=0.184 Sum_probs=100.2
Q ss_pred CceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCC-----CCCCCCcccEEeccCcccc--c-ccCCCCCCccEE
Q 044535 593 NLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETP-----DLSSARNLEIMVLDGCYSL--I-KFPKTSWSITEL 664 (1085)
Q Consensus 593 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~-----~l~~l~~L~~L~L~~~~~l--~-~~~~~~~~L~~L 664 (1085)
.|+...+....+..++..+..+++|++|+|++|.+....+ .+..+++|++|+|++|..- . .+|.
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~-------- 81 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-------- 81 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH--------
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhH--------
Confidence 3444455555566666777777777777777775544321 2445566666666554211 0 0000
Q ss_pred ecCCCccccccccccCCCcccEEEccCCCCCC----ccCCcccCCCCccEEEecccCCCccCCCCCCCccccCccccccc
Q 044535 665 DLGETAIEEVPPAIESLGKLVVLRLDNCRRLK----NLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIE 740 (1085)
Q Consensus 665 ~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~----~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~ 740 (1085)
.+..+...+..+++|++|+|++|.... .+|..+.++++|++|+|++|..... ...
T Consensus 82 -----~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----------------~~~ 140 (386)
T 2ca6_A 82 -----ALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ----------------AGA 140 (386)
T ss_dssp -----HHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH----------------HHH
T ss_pred -----HHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH----------------HHH
Confidence 001122223566666666666655433 2444455566666666655532110 001
Q ss_pred ccCcccccC---------CCCCEEEccCCccc-cccc---ccccCCCCCcEEEeeCCCCCC-----CcchhhcCCCCccE
Q 044535 741 ELPSSVECL---------TELTVLRLQKCKRL-KRVS---SSICKLKSLEILYLFGCSKLE-----GLPEILESMERLET 802 (1085)
Q Consensus 741 ~lp~~l~~l---------~~L~~L~L~~~~~~-~~l~---~~l~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~ 802 (1085)
.++..+..+ ++|++|++++|.+. ..++ ..+..+++|++|++++|.... ..+..+..+++|+.
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~ 220 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCE
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccE
Confidence 122222222 55555555555543 2222 234445555555555553331 11224444555555
Q ss_pred EEccCCCC-----cccCccccCCCCCCEEEccCCC
Q 044535 803 LYLAGTPI-----KELPSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 803 L~L~~~~i-----~~lp~~l~~l~~L~~L~L~~~~ 832 (1085)
|+|++|.+ ..+|..+..+++|+.|+|++|.
T Consensus 221 L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred EECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 55555555 2344444455555555555554
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=1.5e-17 Score=181.56 Aligned_cols=202 Identities=23% Similarity=0.302 Sum_probs=147.6
Q ss_pred ccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEc
Q 044535 678 IESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRL 757 (1085)
Q Consensus 678 i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L 757 (1085)
...+++|+.|++++|. +..++. +..+++|++|++++|. +..++ .+..+++|++|++
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~~~~-l~~l~~L~~L~l~~n~---------------------l~~~~-~l~~l~~L~~L~L 92 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVRYLALGGNK---------------------LHDIS-ALKELTNLTYLIL 92 (272)
T ss_dssp HHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECTTSC---------------------CCCCG-GGTTCTTCCEEEC
T ss_pred cccccceeeeeeCCCC-cccccc-cccCCCCcEEECCCCC---------------------CCCch-hhcCCCCCCEEEC
Confidence 4466777777777754 344443 6667777777777653 22332 4667788888888
Q ss_pred cCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEccCCCchhh
Q 044535 758 QKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-IDHLPQLSLLSLENCKNILV 836 (1085)
Q Consensus 758 ~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~ 836 (1085)
++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---- 168 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ---- 168 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC----
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC----
Confidence 88877666666677888888888888776665566677888888888888888877654 5778888888888887
Q ss_pred hccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeeccccccccccCC
Q 044535 837 FLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNVSYCKRLQSLQE 912 (1085)
Q Consensus 837 ~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l~~c~~L~~lp~ 912 (1085)
++.+++..+..+++|+.|+|++|.+..++. .+..+++|+.|++++|.+.. .+++|+.|+++.|.....+|.
T Consensus 169 -l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 169 -LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp -CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----CTTTTHHHHHHHHHTGGGBBC
T ss_pred -cCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc----cCcHHHHHHHHHHhCCCcccC
Confidence 677777777888888888888888887654 46788888888888887653 466777787777766666664
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.72 E-value=7e-17 Score=179.53 Aligned_cols=189 Identities=25% Similarity=0.368 Sum_probs=118.8
Q ss_pred ccCCCCccEEEecccCCCccCCCC--CCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEE
Q 044535 702 ICNLTSLTELALHGCSNITKFPDI--SGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEIL 779 (1085)
Q Consensus 702 l~~l~~L~~L~L~~~~~~~~~p~~--~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 779 (1085)
...+++|++|++++|. +..+|.. +.+|+.|++++|.+..++. +..+++|+.|++++|.... ++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 4568889999998874 3334422 3456666666666666665 6666666666666666433 23 45666666666
Q ss_pred EeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCC
Q 044535 780 YLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLND 859 (1085)
Q Consensus 780 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~ 859 (1085)
++++|.... ++. +..+++|+.|++++|.++.++. +..+++|+.|+|++|. ++.++. +..+++|+.|++++
T Consensus 113 ~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-----l~~~~~--l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 113 DLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-----VSDLTP--LANLSKLTTLKADD 182 (308)
T ss_dssp ECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-----CCCCGG--GTTCTTCCEEECCS
T ss_pred ECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-----CCCChh--hcCCCCCCEEECCC
Confidence 666665433 332 5666666666666666666554 5666666666666666 555554 56666666666666
Q ss_pred CCCCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccccc
Q 044535 860 CNLLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 860 n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~c~ 905 (1085)
|.+..++. +..+++|+.|++++|.++.++ +..+++|+.|++++|+
T Consensus 183 n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 183 NKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CccCcChh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 66666554 566666666666666666654 5666666666666654
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.72 E-value=9.5e-18 Score=187.01 Aligned_cols=201 Identities=18% Similarity=0.137 Sum_probs=110.8
Q ss_pred CCcccEEEccCCCCCCccCCcc--cCCCCccEEEecccCCCccCCCCCCCccccCcccccccccC-cccccCCCCCEEEc
Q 044535 681 LGKLVVLRLDNCRRLKNLPSSI--CNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELP-SSVECLTELTVLRL 757 (1085)
Q Consensus 681 l~~L~~L~L~~~~~~~~lp~~l--~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L 757 (1085)
+++|++|++++|...+..|..+ ..+++|++|+|++|......+. ++ ..+..+++|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-----------------~~~~~~~~~~~L~~L~L 152 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-----------------LAELQQWLKPGLKVLSI 152 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-----------------HHHHHTTBCSCCCEEEE
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-----------------hHHHHhhhccCCCEEEe
Confidence 4568888888877776777666 7788888888887654432221 00 12234556666666
Q ss_pred cCCcccccccccccCCCCCcEEEeeCCCCCCC--cc--hhhcCCCCccEEEccCCCCcccCcc----ccCCCCCCEEEcc
Q 044535 758 QKCKRLKRVSSSICKLKSLEILYLFGCSKLEG--LP--EILESMERLETLYLAGTPIKELPSS----IDHLPQLSLLSLE 829 (1085)
Q Consensus 758 ~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~L~~~~i~~lp~~----l~~l~~L~~L~L~ 829 (1085)
++|.+.+..+..+..+++|++|++++|..... ++ ..+..+++|++|++++|.++.++.. +..+++|++|+|+
T Consensus 153 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls 232 (310)
T 4glp_A 153 AQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLS 232 (310)
T ss_dssp ECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECT
T ss_pred eCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECC
Confidence 66655555555555566666666665544321 11 1224455566666666655544331 3455566666666
Q ss_pred CCCchhhhccCCchhhhcCC---CCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccccc
Q 044535 830 NCKNILVFLTNLPLALLSGL---CSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 830 ~~~~l~~~l~~l~~~~~~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~c~ 905 (1085)
+|. ++...+..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|++|++++++ +..+++|+.|++++|+
T Consensus 233 ~N~-----l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 233 HNS-----LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TSC-----CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECSSTT
T ss_pred CCC-----CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECcCCC
Confidence 655 333311122222 466666666666666555443 56666666666666554 4555566666665554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.2e-16 Score=181.41 Aligned_cols=228 Identities=18% Similarity=0.202 Sum_probs=119.0
Q ss_pred ccccCCCC-CCccEEecCCCccccccc-cccCCCcccEEEccCCCCCCccCC-cccCCCCccEEEecccCCCccCCCCCC
Q 044535 651 LIKFPKTS-WSITELDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLPS-SICNLTSLTELALHGCSNITKFPDISG 727 (1085)
Q Consensus 651 l~~~~~~~-~~L~~L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~~~ 727 (1085)
+..+|..+ .++++|+|++|.|+.+|+ .+.++++|++|+|++|...+.+|. .+.++++|.++.+.
T Consensus 21 Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~------------- 87 (350)
T 4ay9_X 21 VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE------------- 87 (350)
T ss_dssp CCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE-------------
T ss_pred CCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc-------------
Confidence 33444433 245555555555555554 245555555555555544444432 23444444433322
Q ss_pred CccccCccccccccc-CcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch-hhcCC-CCccEEE
Q 044535 728 DMKYLSLSETAIEEL-PSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESM-ERLETLY 804 (1085)
Q Consensus 728 ~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l-~~L~~L~ 804 (1085)
..|.+..+ |..+..+++|+.|++++|.+....+..+....++..|++.++..+..++. .+..+ ..|+.|+
T Consensus 88 -------~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~ 160 (350)
T 4ay9_X 88 -------KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160 (350)
T ss_dssp -------EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred -------cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhc
Confidence 22444444 34466677777777777765554444444555666677766555554443 23333 2466666
Q ss_pred ccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCC
Q 044535 805 LAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNI 884 (1085)
Q Consensus 805 L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 884 (1085)
+++|.|+.+|.......+|+.|++++|.. ++.+|...+ ..+++|+.|++++|+
T Consensus 161 L~~N~i~~i~~~~f~~~~L~~l~l~~~n~----l~~i~~~~f-----------------------~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNN----LEELPNDVF-----------------------HGASGPVILDISRTR 213 (350)
T ss_dssp CCSSCCCEECTTSSTTEEEEEEECTTCTT----CCCCCTTTT-----------------------TTEECCSEEECTTSC
T ss_pred cccccccCCChhhccccchhHHhhccCCc----ccCCCHHHh-----------------------ccCcccchhhcCCCC
Confidence 66666666665544445555555543321 334444334 455555555555555
Q ss_pred CCcCCCCCCCCCCEeeccccccccccCCCCCCCCCCeEEEe
Q 044535 885 FESLNLKPFSCLTHLNVSYCKRLQSLQEFPSPLRLVNLQAH 925 (1085)
Q Consensus 885 l~~l~~~~l~~L~~L~l~~c~~L~~lp~l~~~~~L~~L~i~ 925 (1085)
++.+|...+.+|+.|.+.+|..++.+|.+....+|+.+++.
T Consensus 214 l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 214 IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 55555455555555555555556666655555555555543
No 96
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=1.2e-16 Score=174.50 Aligned_cols=177 Identities=24% Similarity=0.339 Sum_probs=142.8
Q ss_pred ccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEe
Q 044535 702 ICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYL 781 (1085)
Q Consensus 702 l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L 781 (1085)
+..+++|+.|++++| .+..++ .+..+++|+.|++++|...+ + ..+..+++|++|++
T Consensus 37 ~~~l~~L~~L~l~~~---------------------~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 37 QNELNSIDQIIANNS---------------------DIKSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHTTCCEEECTTS---------------------CCCCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEEC
T ss_pred cccccceeeeeeCCC---------------------Cccccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEEC
Confidence 445777777777664 333333 47788999999999988665 3 36788999999999
Q ss_pred eCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCC
Q 044535 782 FGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDC 860 (1085)
Q Consensus 782 ~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n 860 (1085)
++|......+..+..+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+++..+..+++|+.|++++|
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~l~~n 167 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-----LQSLPKGVFDKLTNLTELDLSYN 167 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-----cCccCHHHhccCccCCEEECCCC
Confidence 99877766666788899999999999999877754 6889999999999998 77888777888999999999999
Q ss_pred CCCCCCcc-cCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccccc
Q 044535 861 NLLELPSA-LTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKRL 907 (1085)
Q Consensus 861 ~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~L 907 (1085)
+++.++.. +..+++|+.|++++|.++.++ +..+++|+.|++++|+..
T Consensus 168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 99887654 688999999999999998876 577888888888887643
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=1.4e-18 Score=200.47 Aligned_cols=250 Identities=16% Similarity=0.124 Sum_probs=121.5
Q ss_pred cCCCccccccccccCCCcccEEEccCCCCCCc----cCCcccCCCCccEEEecccCCC---ccCCCCCCCccccCccccc
Q 044535 666 LGETAIEEVPPAIESLGKLVVLRLDNCRRLKN----LPSSICNLTSLTELALHGCSNI---TKFPDISGDMKYLSLSETA 738 (1085)
Q Consensus 666 Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~---~~~p~~~~~L~~L~L~~~~ 738 (1085)
++...+..++..+..+++|++|+|++|..... ++..+..+++|++|+|++|... ..+|. .
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~-------------~ 82 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE-------------A 82 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH-------------H
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhH-------------H
Confidence 33444456666677777777777777654433 2333556777777777765321 11111 1
Q ss_pred ccccCcccccCCCCCEEEccCCcccc----cccccccCCCCCcEEEeeCCCCCCC----cchhhcCC---------CCcc
Q 044535 739 IEELPSSVECLTELTVLRLQKCKRLK----RVSSSICKLKSLEILYLFGCSKLEG----LPEILESM---------ERLE 801 (1085)
Q Consensus 739 i~~lp~~l~~l~~L~~L~L~~~~~~~----~l~~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l---------~~L~ 801 (1085)
+..+...+..+++|++|+|++|.+.. .+|..+..+++|++|+|++|..... ++..+..+ ++|+
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCc
Confidence 11122223455555555555555444 2444455555555555555544221 12222222 5555
Q ss_pred EEEccCCCCc--ccC---ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-----CCCcccCC
Q 044535 802 TLYLAGTPIK--ELP---SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-----ELPSALTC 871 (1085)
Q Consensus 802 ~L~L~~~~i~--~lp---~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-----~lp~~l~~ 871 (1085)
+|++++|.++ .+| ..+..+++|++|+|++|......+..+.+..+..+++|+.|+|++|.++ .+|..+..
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 5555555554 223 2344555555555555541100000011113445555666666665552 34555555
Q ss_pred CCCCCEEECCCCCCCcC-----C--C--CCCCCCCEeecccccccc----ccCC-C-CCCCCCCeEEEeCCC
Q 044535 872 LSSLEILGLSGNIFESL-----N--L--KPFSCLTHLNVSYCKRLQ----SLQE-F-PSPLRLVNLQAHECI 928 (1085)
Q Consensus 872 l~~L~~L~L~~n~l~~l-----~--~--~~l~~L~~L~l~~c~~L~----~lp~-l-~~~~~L~~L~i~~c~ 928 (1085)
+++|+.|+|++|.++.. + + ..+++|+.|+|++|..-. .+|. + ..+.+|+.|++.+|+
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 55666666666655543 1 2 235556666666554322 2432 2 223455566666664
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=1.9e-16 Score=170.64 Aligned_cols=168 Identities=26% Similarity=0.329 Sum_probs=116.7
Q ss_pred ccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 731 YLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 731 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
.++++++.+..+|..+. ++|+.|+|++|.+.+..+..+.++++|++|++++|......+..+..+++|++|+|++|.+
T Consensus 18 ~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 18 EVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 34444555566665443 5677777777776666666677777777777777766665566677777777777777777
Q ss_pred cccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCcC
Q 044535 811 KELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 811 ~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l 888 (1085)
+.+|. .+..+++|++|+|++|. ++.++...+..+++|+.|+|++|.+..+|. .+..+++|+.|+|++|.++.+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQ-----LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred cccChhHhcccCCCCEEEcCCCc-----CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 76654 45677777777777776 666776666777777777777777777665 567777777777777777776
Q ss_pred C---CCCCCCCCEeeccccc
Q 044535 889 N---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 889 ~---~~~l~~L~~L~l~~c~ 905 (1085)
+ +..+++|+.|++++|+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCC
T ss_pred CHHHHhCCCCCCEEEeeCCc
Confidence 5 5566677777777665
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=4.8e-18 Score=191.96 Aligned_cols=200 Identities=21% Similarity=0.243 Sum_probs=105.5
Q ss_pred CcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCc
Q 044535 682 GKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCK 761 (1085)
Q Consensus 682 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 761 (1085)
++++.|++++|......+. +..+++|++|++++|.... ..+|..+..+++|++|++++|.
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~-------------------~~~~~~~~~~~~L~~L~L~~~~ 129 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV-------------------STLHGILSQCSKLQNLSLEGLR 129 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH-------------------HHHHHHHTTBCCCSEEECTTCB
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH-------------------HHHHHHHhhCCCCCEEeCcCcc
Confidence 5555666655443333332 4445666666665542110 0133344555566666666665
Q ss_pred ccccccccccCCCCCcEEEeeCCCCCC--CcchhhcCCCCccEEEccCC-CCcc--cCccccCCC-CCCEEEccCCC-ch
Q 044535 762 RLKRVSSSICKLKSLEILYLFGCSKLE--GLPEILESMERLETLYLAGT-PIKE--LPSSIDHLP-QLSLLSLENCK-NI 834 (1085)
Q Consensus 762 ~~~~l~~~l~~l~~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~L~~~-~i~~--lp~~l~~l~-~L~~L~L~~~~-~l 834 (1085)
.....+..+..+++|++|++++|.... .++..+..+++|++|++++| .++. ++..+..++ +|++|+|++|. .+
T Consensus 130 l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 554555555556666666666653333 24555555666666666666 5552 455555566 66666666663 11
Q ss_pred hhhccCCchhhhcCCCCccEEecCCCC-CC-CCCcccCCCCCCCEEECCCCC-CCcC---CCCCCCCCCEeecccc
Q 044535 835 LVFLTNLPLALLSGLCSLTELHLNDCN-LL-ELPSALTCLSSLEILGLSGNI-FESL---NLKPFSCLTHLNVSYC 904 (1085)
Q Consensus 835 ~~~l~~l~~~~~~~l~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~L~~n~-l~~l---~~~~l~~L~~L~l~~c 904 (1085)
.. ..++ ..+..+++|+.|+|++|. ++ ..+..+..+++|+.|++++|. +... .+..+++|+.|++++|
T Consensus 210 ~~--~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 210 QK--SDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CH--HHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CH--HHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 00 1122 134456666666666666 33 344455666666666666663 3222 1445666666666666
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=175.17 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=137.5
Q ss_pred CCceEEecCCCCchh--hhH--hhhhccccceecccCCCCCCCCCC-C--CCCCcccEEeccCcccccccCCCCCCccEE
Q 044535 592 ENLVELDMHHSNLEH--LWE--EMQHALNLRRIDLSYSLHLNETPD-L--SSARNLEIMVLDGCYSLIKFPKTSWSITEL 664 (1085)
Q Consensus 592 ~~L~~L~L~~~~i~~--l~~--~~~~l~~L~~L~Ls~~~~~~~~~~-l--~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L 664 (1085)
..++.|.+.++.+.. +.. ....+++|++|++++|.+....|. + ..+++|++|++++|......+
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--------- 134 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS--------- 134 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS---------
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh---------
Confidence 456777777776641 211 133457799999999988777764 4 788888888888775431111
Q ss_pred ecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCcc--CCCCCCCccccCcccccccc
Q 044535 665 DLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITK--FPDISGDMKYLSLSETAIEE 741 (1085)
Q Consensus 665 ~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~--~p~~~~~L~~L~L~~~~i~~ 741 (1085)
.++ ..+..+++|++|++++|......|..++.+++|++|+|++|...+. ++
T Consensus 135 --------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------ 188 (310)
T 4glp_A 135 --------WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM------------------ 188 (310)
T ss_dssp --------SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH------------------
T ss_pred --------hhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh------------------
Confidence 111 2345678888888888777666666777888888888888754321 10
Q ss_pred cCcccccCCCCCEEEccCCcccccccc----cccCCCCCcEEEeeCCCCCCCcchhhcCC---CCccEEEccCCCCcccC
Q 044535 742 LPSSVECLTELTVLRLQKCKRLKRVSS----SICKLKSLEILYLFGCSKLEGLPEILESM---ERLETLYLAGTPIKELP 814 (1085)
Q Consensus 742 lp~~l~~l~~L~~L~L~~~~~~~~l~~----~l~~l~~L~~L~L~~~~~l~~lp~~l~~l---~~L~~L~L~~~~i~~lp 814 (1085)
.+..+..+++|++|++++|.+. .++. .+..+++|++|++++|......|..+..+ ++|++|+|++|.++.+|
T Consensus 189 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 189 AALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp TTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred HHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchh
Confidence 0111234445555555555432 1111 12445555555555555444444444443 56777777777777666
Q ss_pred ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC
Q 044535 815 SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 815 ~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 863 (1085)
..+. ++|+.|+|++|. ++.+|. +..+++|+.|+|++|+++
T Consensus 268 ~~~~--~~L~~L~Ls~N~-----l~~~~~--~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNR-----LNRAPQ--PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SCCC--SCCSCEECCSCC-----CCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred hhhc--CCCCEEECCCCc-----CCCCch--hhhCCCccEEECcCCCCC
Confidence 6553 677777777776 555543 566677777777777765
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=9.6e-17 Score=182.07 Aligned_cols=239 Identities=23% Similarity=0.231 Sum_probs=167.8
Q ss_pred eEEEeeCCCCCCCCCCCCCCCceEEecCCCCchhhhHh-hhhccccceecccCCCCCCCCCC--CCCCCcccEEeccCcc
Q 044535 573 RYLHWHRYPLKSLPSNFNPENLVELDMHHSNLEHLWEE-MQHALNLRRIDLSYSLHLNETPD--LSSARNLEIMVLDGCY 649 (1085)
Q Consensus 573 r~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~~--l~~l~~L~~L~L~~~~ 649 (1085)
+.++.+++.++.+|..+ ++++++|+|++|+|+.+|.. +.++++|++|+|++|.+...+|. |.++++|+++...+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46788888999999876 57899999999999999864 78999999999999988776663 6777777665444433
Q ss_pred cccccCCCCCCccEEecCCCcccccc-ccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCC
Q 044535 650 SLIKFPKTSWSITELDLGETAIEEVP-PAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGD 728 (1085)
Q Consensus 650 ~l~~~~~~~~~L~~L~Ls~~~i~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~ 728 (1085)
.+..++ ..+..+++|++|++++|......+..+....++..|++.++..+..++..
T Consensus 91 --------------------~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~--- 147 (350)
T 4ay9_X 91 --------------------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN--- 147 (350)
T ss_dssp --------------------TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT---
T ss_pred --------------------cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc---
Confidence 335554 45778888999998887554433334455667777888776555444321
Q ss_pred ccccCcccccccccCcccccC-CCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcch-hhcCCCCccEEEcc
Q 044535 729 MKYLSLSETAIEELPSSVECL-TELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPE-ILESMERLETLYLA 806 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l-~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~L~ 806 (1085)
.+..+ ..|+.|++++|.+. .++.......+|+.|++.+|+.++.+|. .|..+++|+.|+++
T Consensus 148 ----------------~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 148 ----------------SFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp ----------------SSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred ----------------chhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 12222 35667777776644 3444444566777888877777777764 56788888888888
Q ss_pred CCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCC
Q 044535 807 GTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDC 860 (1085)
Q Consensus 807 ~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n 860 (1085)
+|.++.+|.. .+.+|+.|.+.+|.+ +..+|. +..+++|+.++++++
T Consensus 211 ~N~l~~lp~~--~~~~L~~L~~l~~~~----l~~lP~--l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 211 RTRIHSLPSY--GLENLKKLRARSTYN----LKKLPT--LEKLVALMEASLTYP 256 (350)
T ss_dssp TSCCCCCCSS--SCTTCCEEECTTCTT----CCCCCC--TTTCCSCCEEECSCH
T ss_pred CCCcCccChh--hhccchHhhhccCCC----cCcCCC--chhCcChhhCcCCCC
Confidence 8888888763 366777777777764 455664 677888888888764
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=8.2e-16 Score=165.62 Aligned_cols=177 Identities=27% Similarity=0.366 Sum_probs=144.8
Q ss_pred cccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccC-cccccCCCCCEEEccCCc
Q 044535 683 KLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELP-SSVECLTELTVLRLQKCK 761 (1085)
Q Consensus 683 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~ 761 (1085)
..++++++++ .+..+|..+. ++|+.|+|++ |.+..++ ..+..+++|+.|+|++|.
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~---------------------n~l~~~~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQS---------------------TGLATLSDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTT---------------------SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccC---------------------CCcCccCHhHhcCcccCCEEECCCCc
Confidence 4556666653 3445554433 4555555555 5555444 357889999999999999
Q ss_pred ccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEccCCCchhhhccC
Q 044535 762 RLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-IDHLPQLSLLSLENCKNILVFLTN 840 (1085)
Q Consensus 762 ~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~ 840 (1085)
+.+..+..+..+++|++|++++|......+..+..+++|++|+|++|.++.+|.. +..+++|+.|+|++|. ++.
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~ 145 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-----LQS 145 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCC
T ss_pred CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-----CCc
Confidence 8887777889999999999999988776677889999999999999999988875 5889999999999998 888
Q ss_pred CchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCcC
Q 044535 841 LPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 841 l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l 888 (1085)
++...+..+++|+.|+|++|.+..+|. .+..+++|+.|++++|.+...
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 888889999999999999999998775 688999999999999998764
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=8.1e-18 Score=191.94 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCCCEEEccCCcccc----cccccccCCC-CCcEEEeeCCCCCCCcch----hhcCC-CCccEEEccCCCCcc-----cC
Q 044535 750 TELTVLRLQKCKRLK----RVSSSICKLK-SLEILYLFGCSKLEGLPE----ILESM-ERLETLYLAGTPIKE-----LP 814 (1085)
Q Consensus 750 ~~L~~L~L~~~~~~~----~l~~~l~~l~-~L~~L~L~~~~~l~~lp~----~l~~l-~~L~~L~L~~~~i~~-----lp 814 (1085)
++|++|+|++|.+.. .++..+..++ +|++|++++|......+. .+..+ ++|+.|+|++|.++. ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 355555555554432 2222233333 555555555544433332 22233 356666666666554 44
Q ss_pred ccccC-CCCCCEEEccCCCchhhhccCCch----hhhcCCCCccEEecCCCCCCC--------CCcccCCCCCCCEEECC
Q 044535 815 SSIDH-LPQLSLLSLENCKNILVFLTNLPL----ALLSGLCSLTELHLNDCNLLE--------LPSALTCLSSLEILGLS 881 (1085)
Q Consensus 815 ~~l~~-l~~L~~L~L~~~~~l~~~l~~l~~----~~~~~l~~L~~L~Ls~n~l~~--------lp~~l~~l~~L~~L~L~ 881 (1085)
..+.. .++|++|+|++|. ++..+. ..+..+++|+.|+|++|.+.. ++..+..+++|+.|+++
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~ 292 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNC-----LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKN 292 (362)
T ss_dssp HHHHHSCTTCCEEECCSSC-----CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTT
T ss_pred HHHhcCCCCceEEECcCCC-----CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecC
Confidence 44443 2366666666665 444332 123455666666666665332 23345666667777777
Q ss_pred CCCCCcC
Q 044535 882 GNIFESL 888 (1085)
Q Consensus 882 ~n~l~~l 888 (1085)
+|.+...
T Consensus 293 ~N~l~~~ 299 (362)
T 3goz_A 293 GKEIHPS 299 (362)
T ss_dssp SCBCCGG
T ss_pred CCcCCCc
Confidence 7766543
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.65 E-value=3.1e-17 Score=187.11 Aligned_cols=244 Identities=18% Similarity=0.161 Sum_probs=123.2
Q ss_pred EecCCCccccccc-cccCCCcccEEEccCCCCCCccC----CcccCCC-CccEEEecccCCCccCCCCCCCccccCcccc
Q 044535 664 LDLGETAIEEVPP-AIESLGKLVVLRLDNCRRLKNLP----SSICNLT-SLTELALHGCSNITKFPDISGDMKYLSLSET 737 (1085)
Q Consensus 664 L~Ls~~~i~~lp~-~i~~l~~L~~L~L~~~~~~~~lp----~~l~~l~-~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~ 737 (1085)
++++.|.+....+ .+...++|++|++++|......+ ..+..++ +|++|+|++|......+.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------------- 69 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD------------- 69 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-------------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-------------
Confidence 4566666664433 34444557777777765433332 4455666 777777777633221111
Q ss_pred cccccCcccccC-CCCCEEEccCCccccccccc----ccCC-CCCcEEEeeCCCCCCCcchhh----cC-CCCccEEEcc
Q 044535 738 AIEELPSSVECL-TELTVLRLQKCKRLKRVSSS----ICKL-KSLEILYLFGCSKLEGLPEIL----ES-MERLETLYLA 806 (1085)
Q Consensus 738 ~i~~lp~~l~~l-~~L~~L~L~~~~~~~~l~~~----l~~l-~~L~~L~L~~~~~l~~lp~~l----~~-l~~L~~L~L~ 806 (1085)
.+...+... ++|++|+|++|......+.. +..+ ++|++|++++|......+..+ .. +++|++|+|+
T Consensus 70 ---~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 146 (362)
T 3goz_A 70 ---ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR 146 (362)
T ss_dssp ---HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT
T ss_pred ---HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc
Confidence 111111121 55666666666544433332 2223 556666666655443333222 22 2466666666
Q ss_pred CCCCc-----ccCccccCCC-CCCEEEccCCCchhhhccCCchh----hhcCC-CCccEEecCCCCCCC-----CCcccC
Q 044535 807 GTPIK-----ELPSSIDHLP-QLSLLSLENCKNILVFLTNLPLA----LLSGL-CSLTELHLNDCNLLE-----LPSALT 870 (1085)
Q Consensus 807 ~~~i~-----~lp~~l~~l~-~L~~L~L~~~~~l~~~l~~l~~~----~~~~l-~~L~~L~Ls~n~l~~-----lp~~l~ 870 (1085)
+|.++ .++..+..++ +|++|+|++|. ++..... .+..+ ++|+.|+|++|.+.. ++..+.
T Consensus 147 ~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 147 GNDLGIKSSDELIQILAAIPANVNSLNLRGNN-----LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp TSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-----GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCccccEeeecCCC-----CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 66655 2333344444 66666666665 3333322 22333 366666666666664 444444
Q ss_pred C-CCCCCEEECCCCCCCcCC-------CCCCCCCCEeeccccc-------cccccC-CCCCCCCCCeEEEeCCC
Q 044535 871 C-LSSLEILGLSGNIFESLN-------LKPFSCLTHLNVSYCK-------RLQSLQ-EFPSPLRLVNLQAHECI 928 (1085)
Q Consensus 871 ~-l~~L~~L~L~~n~l~~l~-------~~~l~~L~~L~l~~c~-------~L~~lp-~l~~~~~L~~L~i~~c~ 928 (1085)
. .++|+.|+|++|.++..+ +..+++|+.|++++|. .+..++ .++...+|+.|+++++.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 4 346666666666666543 2555666666666664 112222 24444455566665554
No 105
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.64 E-value=1.7e-17 Score=161.03 Aligned_cols=93 Identities=14% Similarity=0.276 Sum_probs=83.1
Q ss_pred CccccccCchhHH-HHHHHHhC--CCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHH-h
Q 044535 1 FRGEDTRSNFTSH-LYAALCRA--KIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILE-C 75 (1085)
Q Consensus 1 frg~d~r~~f~~~-l~~~L~~~--gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~-~ 75 (1085)
|+|+|+ .|+.| |+.+|+++ |+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.||..++. +
T Consensus 12 y~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~ 89 (149)
T 1fyx_A 12 YSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRL 89 (149)
T ss_dssp CCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTT
T ss_pred CCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHH
Confidence 789997 79997 99999987 99999999 999999999999999999999999999999999999999999985 3
Q ss_pred cccCCCCcEEEEEEee-ecCccc
Q 044535 76 KDTTDMGQIVLPVFYH-VNPSDV 97 (1085)
Q Consensus 76 ~~~~~~~~~v~pvfy~-v~p~~v 97 (1085)
.+ ..++.||||||+ +++.++
T Consensus 90 ~~--~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 90 FD--ENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp CG--GGTTCCEEEESSCCCTTTS
T ss_pred Hh--cCCCEEEEEEecCCChhhc
Confidence 34 556789999997 555444
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.64 E-value=2.2e-15 Score=179.68 Aligned_cols=181 Identities=19% Similarity=0.225 Sum_probs=97.1
Q ss_pred CccEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccc
Q 044535 660 SITELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAI 739 (1085)
Q Consensus 660 ~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i 739 (1085)
+++.|++++|.+..+|..+. ++|++|+|++|.. ..+| ..+++|++|++++|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l-~~ip---~~l~~L~~L~Ls~N~---------------------l 112 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNAL-ISLP---ELPASLEYLDACDNR---------------------L 112 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCC-SCCC---CCCTTCCEEECCSSC---------------------C
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCC-cccc---cccCCCCEEEccCCC---------------------C
Confidence 34555555555555665442 5666666666543 3555 235566666665543 3
Q ss_pred cccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccC
Q 044535 740 EELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDH 819 (1085)
Q Consensus 740 ~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~ 819 (1085)
..+|. +.. +|+.|+|++|.+.+ +|. .+++|+.|++++|.... +|. .+++|+.|+|++|.++.+|. +.
T Consensus 113 ~~ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~- 179 (571)
T 3cvr_A 113 STLPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP- 179 (571)
T ss_dssp SCCCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC-
T ss_pred CCcch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh-
Confidence 33333 222 44444444444333 333 34455555555543322 333 34555566666665555555 33
Q ss_pred CCCCCEEEccCCCchhhhccCCchhhhcC-----CCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcC
Q 044535 820 LPQLSLLSLENCKNILVFLTNLPLALLSG-----LCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 820 l~~L~~L~L~~~~~l~~~l~~l~~~~~~~-----l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 888 (1085)
++|+.|+|++|. ++.+|. +.. .+.|+.|+|++|.++.+|..+..+++|+.|+|++|.+++.
T Consensus 180 -~~L~~L~Ls~N~-----L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 180 -ESLEALDVSTNL-----LESLPA--VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -TTCCEEECCSSC-----CSSCCC--CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -CCCCEEECcCCC-----CCchhh--HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 556666666665 444443 221 1223777777777777777777777777777777777653
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.7e-15 Score=166.69 Aligned_cols=145 Identities=30% Similarity=0.376 Sum_probs=71.0
Q ss_pred cCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEE
Q 044535 748 CLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLS 827 (1085)
Q Consensus 748 ~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~ 827 (1085)
.+++|+.|++++|...+..+ +..+++|+.|++++|.... ++ .+..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~ 140 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY 140 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEE
T ss_pred cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEE
Confidence 33444444444443332211 3444444444444443222 22 2444555555555555555442 344555555555
Q ss_pred ccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccccc
Q 044535 828 LENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 828 L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~c~ 905 (1085)
+++|. ++.++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.++ +..+++|+.|++++|+
T Consensus 141 l~~n~-----l~~~~--~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 141 LGNNK-----ITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCSSC-----CCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred ccCCc-----CCcch--hhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 55555 34442 34555555555555555555544 555555566666555555554 5555566666666554
No 108
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.62 E-value=1.3e-16 Score=156.17 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=83.6
Q ss_pred Cccccc---------cCchhHHHHH-HHH-hCCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCcc-CchhhHH
Q 044535 1 FRGEDT---------RSNFTSHLYA-ALC-RAKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYA-SSSWCLD 67 (1085)
Q Consensus 1 frg~d~---------r~~f~~~l~~-~L~-~~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~-~s~wcl~ 67 (1085)
|+|+|+ |++||.||+. +|+ ++|+++|+|+ ++.+|+.|.++|.+||++|+.+|+|+|++|+ .|.||+.
T Consensus 9 y~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~ 88 (159)
T 1t3g_A 9 YTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIF 88 (159)
T ss_dssp CCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHH
T ss_pred CccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHH
Confidence 788997 6899999887 599 7999999999 9999999999999999999999999999996 9999999
Q ss_pred HHHHHHHhc-ccCCCCcEEEEEEeeecCc
Q 044535 68 ELLKILECK-DTTDMGQIVLPVFYHVNPS 95 (1085)
Q Consensus 68 El~~i~~~~-~~~~~~~~v~pvfy~v~p~ 95 (1085)
|+..++.+. + ..++.||||||.-.+.
T Consensus 89 El~~a~~~~~~--~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 89 ELETRLRNMLV--TGEIKVILIECSELRG 115 (159)
T ss_dssp HHSHHHHHHHH--TTSSEEEEEECSCCCS
T ss_pred HHHHHHHHHHh--cCCCEEEEEEeccccc
Confidence 999999986 4 6678999999885554
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=5.4e-15 Score=162.75 Aligned_cols=176 Identities=24% Similarity=0.346 Sum_probs=119.7
Q ss_pred ccCCCCccEEEecccCCCccCCCC--CCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEE
Q 044535 702 ICNLTSLTELALHGCSNITKFPDI--SGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEIL 779 (1085)
Q Consensus 702 l~~l~~L~~L~L~~~~~~~~~p~~--~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L 779 (1085)
+..+++|+.|++++|. +..++.. +.+|+.|++++|.+..++. +..+++|+.|++++|.... ++ .+..+++|++|
T Consensus 42 ~~~l~~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 3457777777777764 3333332 3567777777777777766 7777777777777776543 33 36677777777
Q ss_pred EeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCC
Q 044535 780 YLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLND 859 (1085)
Q Consensus 780 ~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~ 859 (1085)
++++|.... + ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|. ++.+++ +..+++|+.|+|++
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-----l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-----ISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-----CCCCGG--GTTCTTCCEEECCS
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-----cccchh--hcCCCccCEEECCC
Confidence 777765443 3 3466677777777777777766 456777777777777776 566654 67777777777777
Q ss_pred CCCCCCCcccCCCCCCCEEECCCCCCCcCCCCC
Q 044535 860 CNLLELPSALTCLSSLEILGLSGNIFESLNLKP 892 (1085)
Q Consensus 860 n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~ 892 (1085)
|.++.++. +..+++|+.|++++|.++..+...
T Consensus 188 N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~~~ 219 (291)
T 1h6t_A 188 NHISDLRA-LAGLKNLDVLELFSQECLNKPINH 219 (291)
T ss_dssp SCCCBCGG-GTTCTTCSEEEEEEEEEECCCEEC
T ss_pred CcCCCChh-hccCCCCCEEECcCCcccCCcccc
Confidence 77777654 677777777777777776655433
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=3.5e-15 Score=178.04 Aligned_cols=179 Identities=22% Similarity=0.236 Sum_probs=138.7
Q ss_pred cccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcc
Q 044535 683 KLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKR 762 (1085)
Q Consensus 683 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 762 (1085)
+|+.|++++|. +..+|..+ +++|++|+|++ |.+..+| ..+++|+.|++++|.+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l--~~~L~~L~Ls~---------------------N~l~~ip---~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL--PPQITVLEITQ---------------------NALISLP---ELPASLEYLDACDNRL 112 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC--CTTCSEEECCS---------------------SCCSCCC---CCCTTCCEEECCSSCC
T ss_pred CccEEEeCCCC-CCccCHhH--cCCCCEEECcC---------------------CCCcccc---cccCCCCEEEccCCCC
Confidence 66667776654 33455544 24555555555 5566666 4578999999999987
Q ss_pred cccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCc
Q 044535 763 LKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLP 842 (1085)
Q Consensus 763 ~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~ 842 (1085)
.+ +|. +.+ +|+.|++++|.... +|. .+++|+.|++++|.++.+|. .+++|+.|+|++|. ++.+|
T Consensus 113 ~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-----L~~lp 176 (571)
T 3cvr_A 113 ST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-----LTFLP 176 (571)
T ss_dssp SC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-----CSCCC
T ss_pred CC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-----CCCcc
Confidence 66 777 654 99999999986555 766 68999999999999999887 67899999999998 77777
Q ss_pred hhhhcCCCCccEEecCCCCCCCCCcccCCCCCC-------CEEECCCCCCCcCC--CCCCCCCCEeeccccccccccC
Q 044535 843 LALLSGLCSLTELHLNDCNLLELPSALTCLSSL-------EILGLSGNIFESLN--LKPFSCLTHLNVSYCKRLQSLQ 911 (1085)
Q Consensus 843 ~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L-------~~L~L~~n~l~~l~--~~~l~~L~~L~l~~c~~L~~lp 911 (1085)
. +. ++|+.|+|++|.++.+|. +.. +| +.|+|++|.++.+| +..+++|+.|+|++|+.-..+|
T Consensus 177 ~--l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 177 E--LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp C--CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred h--hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 6 44 899999999999999988 554 77 99999999999998 6668999999999987655444
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=2.6e-15 Score=181.34 Aligned_cols=197 Identities=25% Similarity=0.352 Sum_probs=134.0
Q ss_pred ecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCc
Q 044535 665 DLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPS 744 (1085)
Q Consensus 665 ~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~ 744 (1085)
.++.+.+..++. +..+++|+.|++++|. +..+|. +..+++|+.|+|++|. +..+|.
T Consensus 27 ~l~~~~i~~~~~-~~~L~~L~~L~l~~n~-i~~l~~-l~~l~~L~~L~Ls~N~---------------------l~~~~~ 82 (605)
T 1m9s_A 27 NLKKKSVTDAVT-QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK---------------------LTDIKP 82 (605)
T ss_dssp HTTCSCTTSEEC-HHHHTTCCCCBCTTCC-CCCCTT-GGGCTTCCEEECTTSC---------------------CCCCGG
T ss_pred hccCCCcccccc-hhcCCCCCEEECcCCC-CCCChH-HccCCCCCEEEeeCCC---------------------CCCChh
Confidence 333333343332 4456667777777654 344443 6666777777666642 333333
Q ss_pred ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCC
Q 044535 745 SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLS 824 (1085)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 824 (1085)
+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|.++.+ ..+..+++|+
T Consensus 83 -l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~ 156 (605)
T 1m9s_A 83 -LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLD 156 (605)
T ss_dssp -GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCS
T ss_pred -hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCC
Confidence 6667777777777776543 33 56777778888887776543 3 3467788888888888888877 5677888888
Q ss_pred EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCCCCCCCEe
Q 044535 825 LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFSCLTHL 899 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L 899 (1085)
.|+|++|. +..+++ +..+++|+.|+|++|.+..+| .+..+++|+.|+|++|.+...|+..+..|..+
T Consensus 157 ~L~Ls~N~-----l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~ 223 (605)
T 1m9s_A 157 TLSLEDNQ-----ISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223 (605)
T ss_dssp EEECCSSC-----CCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCCCSSCEEE
T ss_pred EEECcCCc-----CCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccccccEEec
Confidence 88888887 666665 778888888888888888775 47888888888888888887775555554443
No 112
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.60 E-value=1.3e-16 Score=158.84 Aligned_cols=89 Identities=18% Similarity=0.299 Sum_probs=76.6
Q ss_pred CccccccCchhH-HHHHHHHh--CCCeEEecC-CCCCCCcccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHHHhc
Q 044535 1 FRGEDTRSNFTS-HLYAALCR--AKIETFIDY-QLRRGDEVSPALLKAIEDSNISIVILSKDYASSSWCLDELLKILECK 76 (1085)
Q Consensus 1 frg~d~r~~f~~-~l~~~L~~--~gi~~f~d~-~~~~g~~i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~~~~ 76 (1085)
|+|+|+ +|+. ||+.+|++ +|+++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|.||+.||..++.+.
T Consensus 42 ys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~ 119 (178)
T 2j67_A 42 YSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNL 119 (178)
T ss_dssp CCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-
T ss_pred CCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHH
Confidence 789996 7998 59999998 999999999 99999999999999999999999999999999999999999999754
Q ss_pred ccCCCCcEEEEEEeee
Q 044535 77 DTTDMGQIVLPVFYHV 92 (1085)
Q Consensus 77 ~~~~~~~~v~pvfy~v 92 (1085)
. ...++.||||||+-
T Consensus 120 ~-~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 120 F-HENSDHIILILLEP 134 (178)
T ss_dssp -------CEEEEESSC
T ss_pred H-hcCCCEEEEEEecC
Confidence 2 15567899999983
No 113
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=1.5e-14 Score=164.08 Aligned_cols=291 Identities=14% Similarity=0.072 Sum_probs=171.0
Q ss_pred cccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh---hhcHH
Q 044535 165 TSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA---KRGVH 241 (1085)
Q Consensus 165 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~---~~~~~ 241 (1085)
.++..+..|+||+.++++|.+++..+ +++.|+|++|+|||||+++++++. . .+|+... .... .....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~~-~~~~~~~~~~~~ 75 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER----P-GILIDCR-ELYAERGHITRE 75 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEHH-HHHHTTTCBCHH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEee-cccccccCCCHH
Confidence 44556678999999999999998643 689999999999999999999875 1 5555432 2110 01222
Q ss_pred HHHHHHHHHHhc---------------CCCCC--CCCCccchHHHHHhhcC-CceEEEEeCCCCHH--------H-HHHH
Q 044535 242 RLQEELFSRLLE---------------DGDLS--LGASGLGHTFMNTRLRR-KTVLIVLDDVENSQ--------Q-LKNL 294 (1085)
Q Consensus 242 ~l~~~ll~~~~~---------------~~~~~--~~~~~~~~~~l~~~l~~-kr~LlVLDdv~~~~--------~-~~~l 294 (1085)
.+...+...+.. ..... ..........+.+.... ++++|||||++... + +..+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L 155 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF 155 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH
Confidence 333333322211 00000 01112222334333332 48999999997632 2 2333
Q ss_pred hcCCCCCCCCCEEEEEeCChhhhh------c-------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 044535 295 AGDHGWFGLGSRIIITSRDKQVLK------T-------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVV 361 (1085)
Q Consensus 295 ~~~~~~~~~gs~IiiTTR~~~v~~------~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 361 (1085)
...... .++.++|+|++...+.. . .....+++.+|+.+|+.+++....-..... ...+.+.+++
T Consensus 156 ~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 156 AYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 221111 24788999998754311 1 113478999999999999997653211111 1235678999
Q ss_pred HHhcCCchHHHHHhhhhcC-CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCC---CHhHHHHHhhhhcccCCCCHHHHHH
Q 044535 362 HYAKGIPLALKVLGCFLFG-RSKRDWESALNKLRKNPNMEIQNVLRITYDTL---DDEEKAIFLDIACFFKGDNRDHVTT 437 (1085)
Q Consensus 362 ~~~~glPLal~~~g~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~a~f~~~~~~~~l~~ 437 (1085)
..++|+|+++..++..+.. .+...+.. .+.. .+...+.-.+..+ ++..+.++..+|+ .......+..
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~ 303 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRD 303 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHH---HHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHH
Confidence 9999999999999875432 22222211 1110 1111111112222 7888999999998 2334455555
Q ss_pred HHhhC--CCC---cchhhHHHhhccceEEcCCceee-chHHHHHhc
Q 044535 438 ILDGC--GFS---TEIGISVLIDKCLITVTDDRLLM-HDLLQEMGW 477 (1085)
Q Consensus 438 ~~~~~--g~~---~~~~i~~L~~~~Li~~~~~~~~m-Hdli~~~~~ 477 (1085)
.+... +.. ...+++.|.+.++|...++.|.+ |++++++.+
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 54322 332 24568999999999987666654 777777653
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.5e-17 Score=199.69 Aligned_cols=196 Identities=19% Similarity=0.219 Sum_probs=108.7
Q ss_pred CCccEEecCCCccccccccccCCCcccEEEccCCC-------------CCCccCCcccCCCCccEEE-ecccCCCccCCC
Q 044535 659 WSITELDLGETAIEEVPPAIESLGKLVVLRLDNCR-------------RLKNLPSSICNLTSLTELA-LHGCSNITKFPD 724 (1085)
Q Consensus 659 ~~L~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~-------------~~~~lp~~l~~l~~L~~L~-L~~~~~~~~~p~ 724 (1085)
.+|+.|+|++|.+..+|..++++++|+.|++++|. ..+..|..++++++|+.|+ ++.+.
T Consensus 349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~------- 421 (567)
T 1dce_A 349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY------- 421 (567)
T ss_dssp TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-------
T ss_pred ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-------
Confidence 45666777777888999999999999999987653 2333344445555555555 33221
Q ss_pred CCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEE
Q 044535 725 ISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLY 804 (1085)
Q Consensus 725 ~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~ 804 (1085)
+.+|..+.+++|.+..+|. ..|+.|+|++|.+. .+|. ++.+++|+.|+
T Consensus 422 -~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~-------------------------~lp~-~~~l~~L~~L~ 469 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLT-------------------------VLCH-LEQLLLVTHLD 469 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCS-------------------------SCCC-GGGGTTCCEEE
T ss_pred -cchhhhhhhhcccccccCc-----cCceEEEecCCCCC-------------------------CCcC-ccccccCcEee
Confidence 1123334444444444432 13445555544332 2343 44555555555
Q ss_pred ccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC--CcccCCCCCCCEEECCC
Q 044535 805 LAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL--PSALTCLSSLEILGLSG 882 (1085)
Q Consensus 805 L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L~~ 882 (1085)
|++|.++.+|..++.+++|+.|+|++|. ++.+| .+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++
T Consensus 470 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-----l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 470 LSHNRLRALPPALAALRCLEVLQASDNA-----LENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CCSSCCCCCCGGGGGCTTCCEEECCSSC-----CCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cCcccccccchhhhcCCCCCEEECCCCC-----CCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 5555555555555555555555555555 44444 355555666666666666554 55566666666666666
Q ss_pred CCCCcCC------CCCCCCCCEee
Q 044535 883 NIFESLN------LKPFSCLTHLN 900 (1085)
Q Consensus 883 n~l~~l~------~~~l~~L~~L~ 900 (1085)
|.+++++ ...+++|+.|+
T Consensus 543 N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 543 NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CcCCCCccHHHHHHHHCcccCccC
Confidence 6665554 11245555554
No 115
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.59 E-value=1.5e-16 Score=155.95 Aligned_cols=91 Identities=18% Similarity=0.229 Sum_probs=81.7
Q ss_pred CccccccCchhHHHHHHHHhC--CCeEEecC-CCCCCCcccHHHHHhhc-cccEEEEEeccCccCchhhHHHHHHHHHhc
Q 044535 1 FRGEDTRSNFTSHLYAALCRA--KIETFIDY-QLRRGDEVSPALLKAIE-DSNISIVILSKDYASSSWCLDELLKILECK 76 (1085)
Q Consensus 1 frg~d~r~~f~~~l~~~L~~~--gi~~f~d~-~~~~g~~i~~~l~~ai~-~s~~~ivv~S~~y~~s~wcl~El~~i~~~~ 76 (1085)
|+|+| ..|+.+|+.+|+++ |+++|+|+ ++.+|+.|.++|.+||+ +|+++|+|+|++|++|.||+.||..++++.
T Consensus 23 ys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~ 100 (160)
T 2js7_A 23 YCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLS 100 (160)
T ss_dssp CCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHC
T ss_pred ccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHH
Confidence 78999 57999999999985 69999999 99999999999999999 799999999999999999999999999976
Q ss_pred ccCCCCcEEEEEEeeecC
Q 044535 77 DTTDMGQIVLPVFYHVNP 94 (1085)
Q Consensus 77 ~~~~~~~~v~pvfy~v~p 94 (1085)
.. ..++.||||||+.-+
T Consensus 101 ~~-~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 101 PG-AHQKRLIPIKYKAMK 117 (160)
T ss_dssp TT-HHHHTEEEEESSCCC
T ss_pred Hc-cCCCEEEEEEEcccc
Confidence 31 345689999998643
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=1.2e-14 Score=175.37 Aligned_cols=165 Identities=28% Similarity=0.359 Sum_probs=140.8
Q ss_pred ccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCC
Q 044535 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 808 (1085)
|+.|+++++.+..+| .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|... .+| .+..+++|+.|+|++|
T Consensus 45 L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp CCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTS
T ss_pred CCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCC
Confidence 333444445566665 48889999999999998766544 889999999999998654 344 6889999999999999
Q ss_pred CCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcC
Q 044535 809 PIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 809 ~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 888 (1085)
.+..++ .+..+++|+.|+|++|. +..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.++.+
T Consensus 120 ~l~~l~-~l~~l~~L~~L~Ls~N~-----l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 120 GISDIN-GLVHLPQLESLYLGNNK-----ITDIT--VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCCCCG-GGGGCTTCSEEECCSSC-----CCCCG--GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCc-cccCCCccCEEECCCCc-----cCCch--hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC
Confidence 999875 58899999999999998 77773 58899999999999999998876 99999999999999999998
Q ss_pred C-CCCCCCCCEeeccccccc
Q 044535 889 N-LKPFSCLTHLNVSYCKRL 907 (1085)
Q Consensus 889 ~-~~~l~~L~~L~l~~c~~L 907 (1085)
+ +..+++|+.|+|++|+..
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEE
T ss_pred hHHccCCCCCEEEccCCcCc
Confidence 7 899999999999998753
No 117
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=3.4e-14 Score=161.69 Aligned_cols=290 Identities=17% Similarity=0.176 Sum_probs=168.1
Q ss_pred cccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhh------hhhh
Q 044535 165 TSSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREE------SAKR 238 (1085)
Q Consensus 165 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~------s~~~ 238 (1085)
.++..+..|+||+.++++|.+ +.. +++.|+|++|+|||||+++++++.... .+|+... .. +...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 76 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLR-KFEERNYISYKD 76 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGG-GGTTCSCCCHHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEch-hhccccCCCHHH
Confidence 444566789999999999999 753 589999999999999999999886532 4555432 21 1111
Q ss_pred cHHHHHHHHHH---------HHhcC------CCC--CCCC---CccchHHHHHhhcC---CceEEEEeCCCCHH-----H
Q 044535 239 GVHRLQEELFS---------RLLED------GDL--SLGA---SGLGHTFMNTRLRR---KTVLIVLDDVENSQ-----Q 290 (1085)
Q Consensus 239 ~~~~l~~~ll~---------~~~~~------~~~--~~~~---~~~~~~~l~~~l~~---kr~LlVLDdv~~~~-----~ 290 (1085)
....+.+.+.. ..... ... .... .......+.+.+.. ++++|||||++... +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 11222222211 01000 000 0000 01112222233321 48999999996532 1
Q ss_pred -HHHHhcCCCCCCCCCEEEEEeCChhhhh-----------c-C-CCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHH
Q 044535 291 -LKNLAGDHGWFGLGSRIIITSRDKQVLK-----------T-G-VDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGL 356 (1085)
Q Consensus 291 -~~~l~~~~~~~~~gs~IiiTTR~~~v~~-----------~-~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 356 (1085)
+..+..... ..++.++|+|+|...... . + ....+++.+|+.+|+.+++...+.......+..
T Consensus 157 ~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--- 232 (357)
T 2fna_A 157 LLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--- 232 (357)
T ss_dssp CHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH---
T ss_pred HHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH---
Confidence 222211111 124679999999764321 1 1 136789999999999999987542111122222
Q ss_pred HHHHHHHhcCCchHHHHHhhhhcC-CCHHHHHHH-HHhhhcCCCchHHHHHH-hhcC--CCCHhHHHHHhhhhcccCCCC
Q 044535 357 SNQVVHYAKGIPLALKVLGCFLFG-RSKRDWESA-LNKLRKNPNMEIQNVLR-ITYD--TLDDEEKAIFLDIACFFKGDN 431 (1085)
Q Consensus 357 ~~~i~~~~~glPLal~~~g~~L~~-~~~~~w~~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~~a~f~~~~~ 431 (1085)
..++..++|+|+++..++..+.. .+..+|... .+... ..+...+. ..++ .|++..+.++..+|+ . . .
T Consensus 233 -~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 233 -EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp -HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-C
T ss_pred -HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-C
Confidence 78999999999999999877642 233333221 11110 01111122 2221 688999999999998 2 2 5
Q ss_pred HHHHHHHHh-hCC--CC---cchhhHHHhhccceEEcCCcee-echHHHHHh
Q 044535 432 RDHVTTILD-GCG--FS---TEIGISVLIDKCLITVTDDRLL-MHDLLQEMG 476 (1085)
Q Consensus 432 ~~~l~~~~~-~~g--~~---~~~~i~~L~~~~Li~~~~~~~~-mHdli~~~~ 476 (1085)
...+...+. ..| .. ....++.|.+.++|...++.|. .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 555554332 223 22 3457899999999998766665 588888764
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.9e-14 Score=150.05 Aligned_cols=171 Identities=22% Similarity=0.285 Sum_probs=135.2
Q ss_pred ccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 731 YLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 731 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
.++.+++.+..+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|......+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3445556666777544 46889999998887765556678889999999988876655555678889999999999999
Q ss_pred cccCcc-ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcc-cCCCCCCCEEECCCCCCCcC
Q 044535 811 KELPSS-IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSA-LTCLSSLEILGLSGNIFESL 888 (1085)
Q Consensus 811 ~~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l 888 (1085)
+.+|.. +..+++|++|+|++|. ++.++...+..+++|+.|+|++|.++.++.. +..+++|+.|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQ-----LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CccCHhHhcCccCCCEEEcCCCc-----CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--
Confidence 887764 6788999999999998 7778877788899999999999999887764 788999999999999765
Q ss_pred CCCCCCCCCEeeccccccccccCC
Q 044535 889 NLKPFSCLTHLNVSYCKRLQSLQE 912 (1085)
Q Consensus 889 ~~~~l~~L~~L~l~~c~~L~~lp~ 912 (1085)
..+++|+.|+++.+..-..+|.
T Consensus 162 --~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 --CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp --CCTTTTHHHHHHHHHCTTTBBC
T ss_pred --cCCCCHHHHHHHHHhCCceeec
Confidence 3567888888888776667764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=1.4e-14 Score=156.77 Aligned_cols=164 Identities=22% Similarity=0.242 Sum_probs=137.8
Q ss_pred CccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccC
Q 044535 728 DMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAG 807 (1085)
Q Consensus 728 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~ 807 (1085)
++..++++.+.+..++ .+..+++|+.|++++|... .++ .+..+++|+.|++++|.... ++. +..+++|+.|++++
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCC
Confidence 4555677778888777 5788999999999998654 455 68889999999999986554 444 88999999999999
Q ss_pred CCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCc
Q 044535 808 TPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 808 ~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 887 (1085)
|.++.+|.... ++|+.|+|++|. ++.++. +..+++|+.|+|++|+++.++ .+..+++|+.|++++|.+++
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N~-----l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNNE-----LRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSSC-----CSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred CccCCcCcccc--CcccEEEccCCc-----cCCChh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 99998876444 999999999998 777753 889999999999999999886 68889999999999999998
Q ss_pred CC-CCCCCCCCEeecccccc
Q 044535 888 LN-LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 888 l~-~~~l~~L~~L~l~~c~~ 906 (1085)
++ +..+++|+.|++++|+.
T Consensus 165 ~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 165 TGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CTTSTTCCCCCEEEEEEEEE
T ss_pred hHHhccCCCCCEEeCCCCcc
Confidence 87 88899999999998764
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.9e-16 Score=190.11 Aligned_cols=215 Identities=18% Similarity=0.186 Sum_probs=123.0
Q ss_pred CCCCceEEecCCCCchhhhHhhhhccccceecccCCCCCCCCCCCCCCCcccEEeccCcccccccCCCCCCccEEecCCC
Q 044535 590 NPENLVELDMHHSNLEHLWEEMQHALNLRRIDLSYSLHLNETPDLSSARNLEIMVLDGCYSLIKFPKTSWSITELDLGET 669 (1085)
Q Consensus 590 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~l~~l~~L~~L~L~~~~~l~~~~~~~~~L~~L~Ls~~ 669 (1085)
..++|+.|+|++|.+..+|..++++++|+.|++++|..+...+. .+..+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~-------------------- 396 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALD-------------------- 396 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHC--------------------
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcc--------------------
Confidence 56789999999999999999999999999999976632111110 000000
Q ss_pred ccccccccccCCCcccEEE-ccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCccccc
Q 044535 670 AIEEVPPAIESLGKLVVLR-LDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVEC 748 (1085)
Q Consensus 670 ~i~~lp~~i~~l~~L~~L~-L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~ 748 (1085)
.....|..++.+++|+.|+ ++.+ . +.+|+.+.+++|.. ..+|. ..|+.|++++|.+..+|. ++.
T Consensus 397 ~~~~~~~~l~~l~~L~~L~~l~~n-~----------~~~L~~l~l~~n~i-~~l~~--~~L~~L~Ls~n~l~~lp~-~~~ 461 (567)
T 1dce_A 397 PLLYEKETLQYFSTLKAVDPMRAA-Y----------LDDLRSKFLLENSV-LKMEY--ADVRVLHLAHKDLTVLCH-LEQ 461 (567)
T ss_dssp TGGGHHHHHHHHHHHHHHCGGGHH-H----------HHHHHHHHHHHHHH-HHHHH--TTCSEEECTTSCCSSCCC-GGG
T ss_pred cccCCHHHHHHHHhcccCcchhhc-c----------cchhhhhhhhcccc-cccCc--cCceEEEecCCCCCCCcC-ccc
Confidence 0123344455555555555 3321 1 11222222333211 11110 123444444455555554 666
Q ss_pred CCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCccc--CccccCCCCCCEE
Q 044535 749 LTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKEL--PSSIDHLPQLSLL 826 (1085)
Q Consensus 749 l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l--p~~l~~l~~L~~L 826 (1085)
+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.... +| .++.+++|+.|+|++|.++.+ |..+..+++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 666666666666554 556666666666666666654443 55 566677777777777777666 6667777777777
Q ss_pred EccCCCchhhhccCCch---hhhcCCCCccEEec
Q 044535 827 SLENCKNILVFLTNLPL---ALLSGLCSLTELHL 857 (1085)
Q Consensus 827 ~L~~~~~l~~~l~~l~~---~~~~~l~~L~~L~L 857 (1085)
+|++|. ++.+|+ ..+..+++|+.|++
T Consensus 539 ~L~~N~-----l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNS-----LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSG-----GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCc-----CCCCccHHHHHHHHCcccCccCC
Confidence 777776 444433 12344677777754
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.5e-14 Score=147.65 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=109.2
Q ss_pred ccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc-cCccccCCCCCCE
Q 044535 747 ECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE-LPSSIDHLPQLSL 825 (1085)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~ 825 (1085)
..+++|+.|++++|.+. .+| .+..+++|++|++++| ....+ ..+..+++|++|++++|.++. .|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55677788888777654 455 5777788888888877 33333 356777888888888888774 5667778888888
Q ss_pred EEccCCCchhhhccCCchhhhcCCCCccEEecCCCC-CCCCCcccCCCCCCCEEECCCCCCCcCC-CCCCCCCCEeeccc
Q 044535 826 LSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCN-LLELPSALTCLSSLEILGLSGNIFESLN-LKPFSCLTHLNVSY 903 (1085)
Q Consensus 826 L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~l~-~~~l~~L~~L~l~~ 903 (1085)
|++++|. ++...+..+..+++|+.|+|++|. +..+| .+..+++|+.|++++|.+++++ +..+++|+.|++++
T Consensus 117 L~Ls~n~-----i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 117 LDISHSA-----HDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp EECCSSB-----CBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECB
T ss_pred EEecCCc-----cCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeC
Confidence 8888887 555444567788888888888887 66776 5777888888888888887775 77777888888877
Q ss_pred cc
Q 044535 904 CK 905 (1085)
Q Consensus 904 c~ 905 (1085)
|+
T Consensus 191 N~ 192 (197)
T 4ezg_A 191 QT 192 (197)
T ss_dssp C-
T ss_pred cc
Confidence 65
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.54 E-value=3.3e-14 Score=149.42 Aligned_cols=150 Identities=24% Similarity=0.337 Sum_probs=111.1
Q ss_pred ccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 731 YLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 731 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
.++++++.+..+|..+. ++|+.|++++|.+....+..+..+++|+.|+|++|......|..+..+++|++|+|++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34555566677776543 6788888888877666566677788888888888776666677788888888888888888
Q ss_pred cccCcc-ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCc
Q 044535 811 KELPSS-IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 811 ~~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 887 (1085)
+.+|.. +..+++|+.|+|++|. ++.+++..+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|.+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANK-----INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCHhHccCCCCCCEEECCCCC-----CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 877764 4677888888888887 677766677777888888888888877654 46777778888887777643
No 123
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.1e-14 Score=148.33 Aligned_cols=154 Identities=18% Similarity=0.243 Sum_probs=123.1
Q ss_pred cCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEee
Q 044535 703 CNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLF 782 (1085)
Q Consensus 703 ~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~ 782 (1085)
..+++|++|++++| .+..+| .+..+++|+.|++++|.. ..+ ..+..+++|++|+++
T Consensus 41 ~~l~~L~~L~l~~n---------------------~i~~l~-~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~ 96 (197)
T 4ezg_A 41 AQMNSLTYITLANI---------------------NVTDLT-GIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIM 96 (197)
T ss_dssp HHHHTCCEEEEESS---------------------CCSCCT-TGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEE
T ss_pred hhcCCccEEeccCC---------------------CccChH-HHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeE
Confidence 45677777777764 455566 578889999999999843 333 367889999999999
Q ss_pred CCCCCCCcchhhcCCCCccEEEccCCCCcc-cCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCC
Q 044535 783 GCSKLEGLPEILESMERLETLYLAGTPIKE-LPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCN 861 (1085)
Q Consensus 783 ~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~ 861 (1085)
+|......+..+..+++|++|++++|.++. .|..+..+++|+.|+|++|. .++.++ .+..+++|+.|++++|.
T Consensus 97 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~----~i~~~~--~l~~l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG----AITDIM--PLKTLPELKSLNIQFDG 170 (197)
T ss_dssp CTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT----BCCCCG--GGGGCSSCCEEECTTBC
T ss_pred CCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC----CccccH--hhcCCCCCCEEECCCCC
Confidence 988777677888899999999999999984 67778899999999999997 245565 48889999999999999
Q ss_pred CCCCCcccCCCCCCCEEECCCCCCCc
Q 044535 862 LLELPSALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 862 l~~lp~~l~~l~~L~~L~L~~n~l~~ 887 (1085)
+..++ .+..+++|+.|++++|++..
T Consensus 171 i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 171 VHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCCT-TGGGCSSCCEEEECBC----
T ss_pred CcChH-HhccCCCCCEEEeeCcccCC
Confidence 99887 78889999999999998764
No 124
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.53 E-value=3.9e-14 Score=147.71 Aligned_cols=177 Identities=21% Similarity=0.181 Sum_probs=105.9
Q ss_pred cEEecCCCccccccccccCCCcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccc
Q 044535 662 TELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEE 741 (1085)
Q Consensus 662 ~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~ 741 (1085)
+.++++++.+..+|..+ .++|++|++++|......+..+..+++|++|++++|. +..
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~~ 66 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK---------------------LQS 66 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC---------------------CCC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc---------------------cCc
Confidence 45666666677777554 3577777777765443333345667777777776642 223
Q ss_pred cCc-ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-ccC
Q 044535 742 LPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-IDH 819 (1085)
Q Consensus 742 lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~ 819 (1085)
+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|......+..+..+++|+.|++++|.++.+|.. +..
T Consensus 67 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 332 245666777777777665544444456667777777766655444444456666777777777766666543 556
Q ss_pred CCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC-CCCcccCCCC
Q 044535 820 LPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL-ELPSALTCLS 873 (1085)
Q Consensus 820 l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~ 873 (1085)
+++|+.|+|++|+ + ...+++|+.|+++.|+++ .+|..++.++
T Consensus 147 l~~L~~L~l~~N~-----~-------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 147 LTSLQYIWLHDNP-----W-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CTTCCEEECCSCC-----B-------CCCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CCCccEEEecCCC-----e-------ecCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 6667777776665 1 223455666666666666 4555554443
No 125
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.53 E-value=2.3e-13 Score=158.16 Aligned_cols=284 Identities=13% Similarity=0.026 Sum_probs=166.1
Q ss_pred CCCCccccchhHHHHHHhh-cc--CC--CceEEEEE--EecCCCcHHHHHHHHHHHHhcc-----Ccc-eEEEeehhhhh
Q 044535 169 ALDGLIGIESRVEKVESLL-CI--GL--VDVHIVGI--WGMGGIGKTTIARAIFDRIANQ-----FEG-CCFLENVREES 235 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~v~~~~~~~-----F~~-~~~~~~~~~~s 235 (1085)
.+..++||+.+++++.+++ .. .. ...+.+.| +|++|+||||||+++++..... +.. ++|+...
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF---- 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG----
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC----
Confidence 3478999999999999988 42 11 23455666 9999999999999999877553 232 3455321
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc--CCceEEEEeCCCCH--------HHHHHHhcCCCCC---C
Q 044535 236 AKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR--RKTVLIVLDDVENS--------QQLKNLAGDHGWF---G 302 (1085)
Q Consensus 236 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~--------~~~~~l~~~~~~~---~ 302 (1085)
.......+..+++..+.................+.+.+. +++++|||||++.. +.+..+...+... +
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 223455666677666643211001111223344555554 67999999999764 3333333222111 2
Q ss_pred --CCCEEEEEeCChhhh-------h---cCCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc-----
Q 044535 303 --LGSRIIITSRDKQVL-------K---TGVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAK----- 365 (1085)
Q Consensus 303 --~gs~IiiTTR~~~v~-------~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~----- 365 (1085)
....||+||+...+. . ......+++++|+.+++.++|...+.....+..-..+....+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 255 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTS
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccC
Confidence 334578888765432 1 11233499999999999999976532111111222466788999999
Q ss_pred -CCchHHHHHhhhh------cC---CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccC----CCC
Q 044535 366 -GIPLALKVLGCFL------FG---RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFK----GDN 431 (1085)
Q Consensus 366 -glPLal~~~g~~L------~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~----~~~ 431 (1085)
|.|..+..++... .+ .+.+.+..++..... ...+.-++..||+.++.++..+|++.. ...
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 9997655544321 11 134444444433210 234556778999999999999997642 123
Q ss_pred HHHHHH----HH-hhCCCC------cchhhHHHhhccceEEc
Q 044535 432 RDHVTT----IL-DGCGFS------TEIGISVLIDKCLITVT 462 (1085)
Q Consensus 432 ~~~l~~----~~-~~~g~~------~~~~i~~L~~~~Li~~~ 462 (1085)
...+.. +. ...|.. ....++.|.+.+||...
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 333222 22 233322 23568889999999865
No 126
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=2.4e-14 Score=162.93 Aligned_cols=172 Identities=23% Similarity=0.237 Sum_probs=86.3
Q ss_pred cEEEecccCCCccCCCC-CCCccccCcccccccccCcc-cc-cCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCC
Q 044535 709 TELALHGCSNITKFPDI-SGDMKYLSLSETAIEELPSS-VE-CLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCS 785 (1085)
Q Consensus 709 ~~L~L~~~~~~~~~p~~-~~~L~~L~L~~~~i~~lp~~-l~-~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~ 785 (1085)
+.++++++ .+..+|.. ...++.|+|++|.+..++.. +. .+++|+.|+|++|.+....+..+..+++|+.|+|++|.
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 45666553 34444432 23455556666665555443 22 55555555555555544444445555555555555554
Q ss_pred CCCCcchhhcCCCCccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhh---cCCCCccEEecCCCC
Q 044535 786 KLEGLPEILESMERLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALL---SGLCSLTELHLNDCN 861 (1085)
Q Consensus 786 ~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~---~~l~~L~~L~Ls~n~ 861 (1085)
.....+..+..+++|+.|+|++|.++.+ |..+..+++|+.|+|++|. ++.+|...+ ..+++|+.|+|++|+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-----l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-----ISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-----CCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 4333333455555555555555555544 3345555555555555555 444554443 345555555555555
Q ss_pred CCCCCc-ccCCCCC--CCEEECCCCCCC
Q 044535 862 LLELPS-ALTCLSS--LEILGLSGNIFE 886 (1085)
Q Consensus 862 l~~lp~-~l~~l~~--L~~L~L~~n~l~ 886 (1085)
+..+|. .+..++. |+.|+|++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 555442 2333443 244555555443
No 127
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=8.5e-14 Score=146.28 Aligned_cols=149 Identities=20% Similarity=0.242 Sum_probs=79.4
Q ss_pred ccCcccccccccCcccccCCCCCEEEccCCccccccc-ccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCC
Q 044535 731 YLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVS-SSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTP 809 (1085)
Q Consensus 731 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~-~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 809 (1085)
.++++++.++.+|..+ .+.++.|+|++|.+.+..+ ..+..+++|+.|++++|......+..+..+++|++|+|++|.
T Consensus 15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 3444445555555543 2345666666665544433 234555556666665554443333455555555555555555
Q ss_pred CcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCCCCCCCEEECCCCCCC
Q 044535 810 IKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 810 i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~ 886 (1085)
++.++. .+..+++|++|+|++|. +..+++..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNR-----ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSC-----CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCc-----CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555443 24555555555555555 4444444455555555555555555554 445555555555555555544
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.9e-13 Score=144.70 Aligned_cols=127 Identities=32% Similarity=0.451 Sum_probs=69.4
Q ss_pred CCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCc
Q 044535 774 KSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSL 852 (1085)
Q Consensus 774 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L 852 (1085)
++|+.|++++|......|..+..+++|+.|+|++|.++.+|. .+..+++|+.|+|++|. ++.++...+..+++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-----l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-----LTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-----CCccChhHhCcchhh
Confidence 344444444444444444444455555555555555555443 23455555555555555 455555455556666
Q ss_pred cEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccc
Q 044535 853 TELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 853 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
+.|+|++|++..+|..+..+++|+.|+|++|+++.++ +..+++|+.|++.+|+
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 6666666666666655666666666666666666554 4445555555555544
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=3e-14 Score=154.23 Aligned_cols=135 Identities=24% Similarity=0.290 Sum_probs=97.3
Q ss_pred cccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCE
Q 044535 746 VECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSL 825 (1085)
Q Consensus 746 l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~ 825 (1085)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.... +|.... ++|+.|++++|.++.++ .+..+++|+.
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~ 132 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEI 132 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCE
T ss_pred HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCCCh-hhcCcccccE
Confidence 4555566666666655443322 5666666666666654432 333222 78888888888888775 4788889999
Q ss_pred EEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCcccCCCCCCCEEECCCCCCCcCCCCCCC
Q 044535 826 LSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPSALTCLSSLEILGLSGNIFESLNLKPFS 894 (1085)
Q Consensus 826 L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l~~~~l~ 894 (1085)
|+|++|. ++.++ .+..+++|+.|+|++|.+..+ ..+..+++|+.|++++|.++..+...++
T Consensus 133 L~Ls~N~-----i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~~~~ 193 (263)
T 1xeu_A 133 LSIRNNK-----LKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVKYQP 193 (263)
T ss_dssp EECTTSC-----CCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEECCS
T ss_pred EECCCCc-----CCCCh--HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcccccc
Confidence 9999888 67775 478889999999999999887 6688899999999999998887644333
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=157.06 Aligned_cols=174 Identities=24% Similarity=0.301 Sum_probs=129.0
Q ss_pred cEEecCCCccccccccccCCCcccEEEccCCCCCCccCCccc-CCCCccEEEecccCCCccCCCCCCCccccCccccccc
Q 044535 662 TELDLGETAIEEVPPAIESLGKLVVLRLDNCRRLKNLPSSIC-NLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIE 740 (1085)
Q Consensus 662 ~~L~Ls~~~i~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~ 740 (1085)
+.++++++.+..+|..+. ..++.|+|++|......+..+. ++++|++|+|++| .+.
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N---------------------~i~ 77 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN---------------------HLN 77 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS---------------------CCC
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC---------------------cCC
Confidence 456777777777776553 3577778877654433334444 6777777777664 334
Q ss_pred ccC-cccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccc--
Q 044535 741 ELP-SSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSI-- 817 (1085)
Q Consensus 741 ~lp-~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l-- 817 (1085)
.++ ..+..+++|+.|+|++|.+....+..+..+++|+.|+|++|......|..+..+++|+.|+|++|.++.+|..+
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 157 (361)
T 2xot_A 78 FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC
T ss_pred ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc
Confidence 443 34677888888888888876665666788888889998888777666778888899999999999999888765
Q ss_pred --cCCCCCCEEEccCCCchhhhccCCchhhhcCCCC--ccEEecCCCCCC
Q 044535 818 --DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCS--LTELHLNDCNLL 863 (1085)
Q Consensus 818 --~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~--L~~L~Ls~n~l~ 863 (1085)
..+++|+.|+|++|. ++.+|...+..++. |+.|+|++|.+.
T Consensus 158 ~~~~l~~L~~L~L~~N~-----l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNK-----LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CTTCCEEECCSSC-----CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CcccCCcCCEEECCCCC-----CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 578999999999998 78888877888887 488999999876
No 131
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=4.3e-13 Score=141.90 Aligned_cols=148 Identities=28% Similarity=0.307 Sum_probs=105.6
Q ss_pred cCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc
Q 044535 732 LSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK 811 (1085)
Q Consensus 732 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~ 811 (1085)
++.+++.+..+|..+. ++|+.|+|++|.+.+..|..+..+++|+.|+|++|......+..+..+++|+.|+|++|.++
T Consensus 24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence 3444455556665443 67777777777776666666777777777777777654444455677788888888888877
Q ss_pred ccCcc-ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCc
Q 044535 812 ELPSS-IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 812 ~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 887 (1085)
.+|.. +..+++|+.|+|++|. +..+|. .+..+++|+.|+|++|++..+|. .+..+++|+.|++++|.+..
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~-----l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNK-----LTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-----CCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccChhHhCcchhhCeEeccCCc-----ccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 77654 5677888888888887 666665 35777888888888888887764 57788888888888887764
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=140.41 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=110.2
Q ss_pred ccccCcccccccccC--cccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEcc
Q 044535 729 MKYLSLSETAIEELP--SSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLA 806 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp--~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 806 (1085)
++.|++++|.+..++ ..+..+++|+.|+|++|.+.+..+..+..+++|++|+|++|......+..+..+++|++|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 444555556666663 347889999999999999877777789999999999999998877777789999999999999
Q ss_pred CCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC
Q 044535 807 GTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 807 ~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 863 (1085)
+|.++.+ |..+..+++|+.|+|++|. ++.+++..+..+++|+.|+|++|.+.
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQ-----ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSC-----CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCc-----CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 9999977 5678899999999999998 78887778899999999999999877
No 133
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=6.3e-13 Score=139.59 Aligned_cols=131 Identities=23% Similarity=0.328 Sum_probs=110.8
Q ss_pred CccccCcccccccccCc-ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEcc
Q 044535 728 DMKYLSLSETAIEELPS-SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLA 806 (1085)
Q Consensus 728 ~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~ 806 (1085)
+++.|++++|.+..+|. .+..+++|+.|+|++|.+.+..|..+.++++|++|+|++|......+..+..+++|+.|+|+
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44555555566666655 67889999999999999888888889999999999999987765555667889999999999
Q ss_pred CCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC
Q 044535 807 GTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 807 ~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 863 (1085)
+|.++.+ |..+..+++|+.|+|++|. ++.++...+..+++|+.|+|++|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNK-----LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-----CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCc-----CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9999977 4578899999999999999 88888888899999999999999876
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=1.1e-11 Score=142.30 Aligned_cols=277 Identities=14% Similarity=0.009 Sum_probs=170.8
Q ss_pred CCccccchhHHHHHHhhcc--CCCceEEEEEEecCCCcHHHHHHHHHHHHhcc------C--cceEEEeehhhhhhhh-c
Q 044535 171 DGLIGIESRVEKVESLLCI--GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ------F--EGCCFLENVREESAKR-G 239 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F--~~~~~~~~~~~~s~~~-~ 239 (1085)
+.++||+.+++++..++.. .....+.+.|+|++|+||||||+++++..... + ...+|+.. .... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC----REVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH----HHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC----ccCCCC
Confidence 7899999999999887753 23345689999999999999999999876443 2 23344432 2222 4
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CCCccchHHHHHhhcCCceEEEEeCCCCHHH-------HHHHhcCCCCCCCCCEEEEEe
Q 044535 240 VHRLQEELFSRLLEDGDLSL-GASGLGHTFMNTRLRRKTVLIVLDDVENSQQ-------LKNLAGDHGWFGLGSRIIITS 311 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~-~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~~~gs~IiiTT 311 (1085)
...+..+++..+.+...... .........+.+.+..++.+|||||++.... +..+.... .+..||+||
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t 171 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMIS 171 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEE
Confidence 45566666666644321111 1122334556666766666999999976542 33333332 678899999
Q ss_pred CChhhh----hc---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc---CCch-HHHHHhhhh--
Q 044535 312 RDKQVL----KT---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAK---GIPL-ALKVLGCFL-- 378 (1085)
Q Consensus 312 R~~~v~----~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---glPL-al~~~g~~L-- 378 (1085)
+..... .. .....+++++++.++..+++...+...-....-..+..+.++++++ |.|. |+..+-...
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 875321 11 2234899999999999999998753111111112345677888888 8886 443332221
Q ss_pred c----CCCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccCCCCH-HHHHHHHhhCCCC------cc
Q 044535 379 F----GRSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFKGDNR-DHVTTILDGCGFS------TE 447 (1085)
Q Consensus 379 ~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~~-~~l~~~~~~~g~~------~~ 447 (1085)
. ..+.+++..++.... ...+..++..|++.++..+..++....+.+. +....+....|.. ..
T Consensus 252 a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 324 (384)
T 2qby_B 252 ASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFS 324 (384)
T ss_dssp TTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred hcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHH
Confidence 1 236777877776653 2456667788999999888878761110111 1233333333322 13
Q ss_pred hhhHHHhhccceEEc
Q 044535 448 IGISVLIDKCLITVT 462 (1085)
Q Consensus 448 ~~i~~L~~~~Li~~~ 462 (1085)
..+..|.++|+|...
T Consensus 325 ~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 325 DIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCEEEE
Confidence 457778899998763
No 135
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4.7e-13 Score=134.22 Aligned_cols=120 Identities=28% Similarity=0.321 Sum_probs=62.9
Q ss_pred ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccC--cccc
Q 044535 741 ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELP--SSID 818 (1085)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp--~~l~ 818 (1085)
.+|..+..+++|+.|++++|.+... ..+..+++|++|++++|.....+|..+..+++|+.|++++|.++.+| ..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4444455555566666665554332 44555555555655555544445555555555555555555555544 3455
Q ss_pred CCCCCCEEEccCCCchhhhccCCch---hhhcCCCCccEEecCCCCCCCCCc
Q 044535 819 HLPQLSLLSLENCKNILVFLTNLPL---ALLSGLCSLTELHLNDCNLLELPS 867 (1085)
Q Consensus 819 ~l~~L~~L~L~~~~~l~~~l~~l~~---~~~~~l~~L~~L~Ls~n~l~~lp~ 867 (1085)
.+++|+.|++++|. ++.++. ..+..+++|+.|++++|.+.++|.
T Consensus 118 ~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 118 KLECLKSLDLFNCE-----VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp SCSCCCEEECCSSG-----GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCCCCEEEeeCCc-----CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 55555555555555 444443 344455555555555555544443
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=4.6e-13 Score=134.30 Aligned_cols=135 Identities=23% Similarity=0.311 Sum_probs=100.7
Q ss_pred cCCCCCEEEccCCccc-ccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc-cCccccCCCCCCE
Q 044535 748 CLTELTVLRLQKCKRL-KRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE-LPSSIDHLPQLSL 825 (1085)
Q Consensus 748 ~l~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~ 825 (1085)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.++. +|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888888888866 5777777788888888888876443 3 667778888888888888876 6666666888888
Q ss_pred EEccCCCchhhhccCCch-hhhcCCCCccEEecCCCCCCCCCc----ccCCCCCCCEEECCCCCCCcCC
Q 044535 826 LSLENCKNILVFLTNLPL-ALLSGLCSLTELHLNDCNLLELPS----ALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 826 L~L~~~~~l~~~l~~l~~-~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
|+|++|. ++.++. ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..++
T Consensus 100 L~Ls~N~-----l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNK-----LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSS-----CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCc-----cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 8888887 666653 457777788888888887777765 6777777777777777766654
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.9e-13 Score=169.27 Aligned_cols=113 Identities=22% Similarity=0.196 Sum_probs=62.9
Q ss_pred ccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCC
Q 044535 697 NLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSL 776 (1085)
Q Consensus 697 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L 776 (1085)
..|..+..+++|+.|+|++| .+..+|..+..+++|+.|+|++|.+. .+|..++++++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n---------------------~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 272 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL---------------------QIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272 (727)
T ss_dssp -------CCCCCCEEECTTS---------------------CCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred cChhhhccCCCCcEEECCCC---------------------CCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence 34445556666666666654 33344444555556666666665544 555555666666
Q ss_pred cEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCC
Q 044535 777 EILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 777 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 832 (1085)
++|+|++|... .+|..++.+++|++|+|++|.++.+|..+..+++|+.|+|++|.
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 66666665543 55555666666666666666666666666666666666666665
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=2e-11 Score=140.25 Aligned_cols=282 Identities=16% Similarity=0.092 Sum_probs=164.3
Q ss_pred CCCCccccchhHHHHHHhhccC--CCceEEEEEEecCCCcHHHHHHHHHHHHhccCc---ceEEEeehhhhhhhhcHHHH
Q 044535 169 ALDGLIGIESRVEKVESLLCIG--LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE---GCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---~~~~~~~~~~~s~~~~~~~l 243 (1085)
.++.++||+.+++++.+++... ....+.+.|+|++|+||||||+++++.....+. ..+|+.. ........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCCCCHHHH
Confidence 4578999999999999988642 334568899999999999999999998766542 3444432 122233444
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhc--CCceEEEEeCCCCHH------HHHHHhcCCCC-CCCCCEEEEEeCCh
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLR--RKTVLIVLDDVENSQ------QLKNLAGDHGW-FGLGSRIIITSRDK 314 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~~------~~~~l~~~~~~-~~~gs~IiiTTR~~ 314 (1085)
...++..+.................+.+.+. +++.+||||+++... .+..+...... ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 4444443321110000011122333444444 458999999986543 23333322211 13456778888866
Q ss_pred hhhhc--------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhc---CCchHHHHH-hhhh----
Q 044535 315 QVLKT--------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAK---GIPLALKVL-GCFL---- 378 (1085)
Q Consensus 315 ~v~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---glPLal~~~-g~~L---- 378 (1085)
..... .....+++++++.++..+++...+........-..+..+.++++++ |.|..+..+ ....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 43221 1225899999999999999987643111112223456677888888 999744332 2221
Q ss_pred -cC---CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccC-CCC---HHHH----HHHHhhCCCC-
Q 044535 379 -FG---RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFK-GDN---RDHV----TTILDGCGFS- 445 (1085)
Q Consensus 379 -~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~-~~~---~~~l----~~~~~~~g~~- 445 (1085)
.+ -+.++++.++.... ...+.-++..+++.++..+..++.+.. +.. ...+ ..+....|..
T Consensus 254 ~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~ 326 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEA 326 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCC
Confidence 11 25566666665542 235666778899999999888886543 221 2222 2222333322
Q ss_pred -----cchhhHHHhhccceEE
Q 044535 446 -----TEIGISVLIDKCLITV 461 (1085)
Q Consensus 446 -----~~~~i~~L~~~~Li~~ 461 (1085)
....++.|.+.|+|..
T Consensus 327 ~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 327 VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHhCCCEEE
Confidence 2345778888888875
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2.5e-12 Score=126.03 Aligned_cols=111 Identities=29% Similarity=0.307 Sum_probs=58.2
Q ss_pred ccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccC--cccc
Q 044535 741 ELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELP--SSID 818 (1085)
Q Consensus 741 ~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp--~~l~ 818 (1085)
.+|..+..+++|+.|++++|..... ..+..+++|++|++++|.....+|..+..+++|++|++++|.++.+| ..+.
T Consensus 33 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 33 KLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp BCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred HHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 4444455556666666666554333 34555555666666555554445555555555555555555555443 4455
Q ss_pred CCCCCCEEEccCCCchhhhccCCch---hhhcCCCCccEEecC
Q 044535 819 HLPQLSLLSLENCKNILVFLTNLPL---ALLSGLCSLTELHLN 858 (1085)
Q Consensus 819 ~l~~L~~L~L~~~~~l~~~l~~l~~---~~~~~l~~L~~L~Ls 858 (1085)
.+++|++|++++|. ++.++. ..+..+++|+.|+++
T Consensus 111 ~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 111 KLENLKSLDLFNCE-----VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GCTTCCEEECTTCG-----GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hCCCCCEEeCcCCc-----ccchHHHHHHHHHHCCCcccccCC
Confidence 55555555555554 333433 334445555555443
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=3e-11 Score=138.81 Aligned_cols=280 Identities=14% Similarity=0.091 Sum_probs=165.4
Q ss_pred CCCCccccchhHHHHHHhhccC--CCceEEEEEEecCCCcHHHHHHHHHHHHhccC-----c-ceEEEeehhhhhhhhcH
Q 044535 169 ALDGLIGIESRVEKVESLLCIG--LVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-----E-GCCFLENVREESAKRGV 240 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-----~-~~~~~~~~~~~s~~~~~ 240 (1085)
.++.++||+.+++++..++... ....+.+.|+|++|+||||+|+++++.....+ . ..+|+.. ......
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA----RHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET----TTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC----CcCCCH
Confidence 3478999999999999988532 34456889999999999999999998765431 2 2334432 222344
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh--cCCceEEEEeCCCCHHH-------HHHHhcCCCCC--CCCCEEEE
Q 044535 241 HRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL--RRKTVLIVLDDVENSQQ-------LKNLAGDHGWF--GLGSRIII 309 (1085)
Q Consensus 241 ~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdv~~~~~-------~~~l~~~~~~~--~~gs~Iii 309 (1085)
..+...++..+.................+.+.+ .+++.+||||+++.... +..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 455566666553321111111122234444455 34688999999987542 22223222111 34667888
Q ss_pred EeCChhhh--------hcCCCeEEEeecCCHHHHHHHHHHhhc---cCCCCCCCHHHHHHHHHHHhc---CCch-HHHHH
Q 044535 310 TSRDKQVL--------KTGVDEMYEVEELNCREALQLFSLNAF---KLNHPTEDYMGLSNQVVHYAK---GIPL-ALKVL 374 (1085)
Q Consensus 310 TTR~~~v~--------~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---glPL-al~~~ 374 (1085)
||+..... .......+.+++++.++..+++...+. ...... .+..+.++++++ |.|- |+..+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 88765321 111225789999999999999987743 222222 234667888888 9993 33333
Q ss_pred hhhhc-----C---CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccCCCC---HH----HHHHHH
Q 044535 375 GCFLF-----G---RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFKGDN---RD----HVTTIL 439 (1085)
Q Consensus 375 g~~L~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~~---~~----~l~~~~ 439 (1085)
..... + -+.+++..++.... ...+.-++..|++.++..++.+++...+.+ .. ....+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 22211 2 25677777766542 234566788999999999888885544432 22 122222
Q ss_pred hhCCCC------cchhhHHHhhccceEEc
Q 044535 440 DGCGFS------TEIGISVLIDKCLITVT 462 (1085)
Q Consensus 440 ~~~g~~------~~~~i~~L~~~~Li~~~ 462 (1085)
...|.. ....++.|...|++...
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 333322 23457778888888763
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.33 E-value=2.6e-12 Score=144.17 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=91.2
Q ss_pred CCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCC
Q 044535 772 KLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLC 850 (1085)
Q Consensus 772 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~ 850 (1085)
...++..+.+.++-....+......+++|+.|+|++|.++.+|. .+..+++|+.|+|.+| +..++...|.+++
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n------i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN------LKTIGQRVFSNCG 273 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT------CCEECTTTTTTCT
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc------cceehHHHhhCCh
Confidence 34567777777642222222222347889999999988888876 5788899999999886 4567777888999
Q ss_pred Ccc-EEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEee
Q 044535 851 SLT-ELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLN 900 (1085)
Q Consensus 851 ~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~ 900 (1085)
+|+ .|++.+ .++.++ ..|.++++|+.|++++|+++.++ +..+++|+.|+
T Consensus 274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 998 999988 777775 57888999999999888888887 66666777664
No 142
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=1.8e-12 Score=127.09 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=70.8
Q ss_pred CCCCEEEccCCccc-ccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcc-cCccccCCCCCCEEE
Q 044535 750 TELTVLRLQKCKRL-KRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKE-LPSSIDHLPQLSLLS 827 (1085)
Q Consensus 750 ~~L~~L~L~~~~~~-~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~-lp~~l~~l~~L~~L~ 827 (1085)
++|+.|++++|... +.+|..+..+++|+.|++++|..... ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56667777776655 45666566666666666666544332 445556666666666666654 444444556666666
Q ss_pred ccCCCchhhhccCCch-hhhcCCCCccEEecCCCCCCCCCc----ccCCCCCCCEEECC
Q 044535 828 LENCKNILVFLTNLPL-ALLSGLCSLTELHLNDCNLLELPS----ALTCLSSLEILGLS 881 (1085)
Q Consensus 828 L~~~~~l~~~l~~l~~-~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~ 881 (1085)
+++|. ++.++. ..+..+++|+.|++++|.++.+|. .+..+++|+.|+++
T Consensus 95 ls~N~-----i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-----IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-----CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-----CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66665 444331 345555556666666555555443 34555555555544
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=1e-12 Score=162.74 Aligned_cols=113 Identities=26% Similarity=0.314 Sum_probs=50.9
Q ss_pred CcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCC
Q 044535 743 PSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQ 822 (1085)
Q Consensus 743 p~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~ 822 (1085)
|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|++|... .+|..+..+++|+.|+|++|.|+.+|..+..+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 334444455555555554433 34444444455555555444333 4444444445555555555554444444444444
Q ss_pred CCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCC
Q 044535 823 LSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 823 L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 863 (1085)
|++|+|++|. ++.+|.. +..+++|+.|+|++|.++
T Consensus 295 L~~L~L~~N~-----l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 295 LKYFYFFDNM-----VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CSEEECCSSC-----CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCEEECCCCC-----CCccChh-hhcCCCccEEeCCCCccC
Confidence 4444444444 3344432 444444444444444444
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=5.4e-12 Score=127.44 Aligned_cols=101 Identities=24% Similarity=0.311 Sum_probs=52.1
Q ss_pred CccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc--ccCCCCCCC
Q 044535 799 RLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS--ALTCLSSLE 876 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~ 876 (1085)
+|+.|++++|.++.+ ..+..+++|++|+|++|. ++.+|+..+..+++|+.|+|++|.+..+|. .+..+++|+
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-----ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-----CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-----ccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCC
Confidence 455555555555444 344455555555555555 444444334555555555555555555554 455555555
Q ss_pred EEECCCCCCCcCC------CCCCCCCCEeeccccc
Q 044535 877 ILGLSGNIFESLN------LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 877 ~L~L~~n~l~~l~------~~~l~~L~~L~l~~c~ 905 (1085)
.|++++|.++.++ +..+++|+.|++++|+
T Consensus 117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5555555555443 2344555555555543
No 145
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=2.5e-11 Score=124.33 Aligned_cols=89 Identities=24% Similarity=0.399 Sum_probs=53.1
Q ss_pred hcCCCCccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCC-CcccCC
Q 044535 794 LESMERLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLEL-PSALTC 871 (1085)
Q Consensus 794 l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~ 871 (1085)
+..+++|++|+|++|.++.+ |..+..+++|++|+|++|. ++.+++..+.++++|+.|+|++|+++.+ |..+..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-----IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-----CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-----CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 44445555555555555544 3445555555555555555 4444444456666677777777766653 556777
Q ss_pred CCCCCEEECCCCCCCc
Q 044535 872 LSSLEILGLSGNIFES 887 (1085)
Q Consensus 872 l~~L~~L~L~~n~l~~ 887 (1085)
+++|+.|+|++|.++.
T Consensus 125 l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNC 140 (192)
T ss_dssp CTTCCEEECTTCCBCC
T ss_pred CCCCCEEEeCCCCccC
Confidence 7777777777777664
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=4.8e-11 Score=122.25 Aligned_cols=102 Identities=24% Similarity=0.369 Sum_probs=54.6
Q ss_pred CccEEEccCCCCcccCcc--ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCCc-ccCCCCCC
Q 044535 799 RLETLYLAGTPIKELPSS--IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELPS-ALTCLSSL 875 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~lp~~--l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L 875 (1085)
+|+.|++++|.++.++.. +..+++|++|+|++|. ++.+++..+.++++|+.|+|++|+++.++. .+..+++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 104 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-----LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-----CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-----CCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 455555555555555432 4555555555555555 444544445555555555555555554432 35555555
Q ss_pred CEEECCCCCCCcCC---CCCCCCCCEeeccccc
Q 044535 876 EILGLSGNIFESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 876 ~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
+.|+|++|+++.+. +..+++|+.|++++|+
T Consensus 105 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 105 KTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 55555555555442 4455555555555544
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=5e-11 Score=122.16 Aligned_cols=107 Identities=28% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCcc
Q 044535 775 SLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLT 853 (1085)
Q Consensus 775 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~ 853 (1085)
+|++|++++|.. ..+|..+..+++|+.|+|++|.++.++. .+..+++|++|+|++|. ++.+++..+.++++|+
T Consensus 32 ~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-----l~~i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 32 DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-----LRCIPPRTFDGLKSLR 105 (193)
T ss_dssp TCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCBCCTTTTTTCTTCC
T ss_pred CCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-----cCEeCHHHhCCCCCCC
Confidence 455555555433 2445556666666666666666665553 46677777777777776 6666666677777888
Q ss_pred EEecCCCCCCCCCc-ccCCCCCCCEEECCCCCCCc
Q 044535 854 ELHLNDCNLLELPS-ALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 854 ~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 887 (1085)
.|+|++|.++.+|. .+..+++|+.|++++|.+..
T Consensus 106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 88888888887765 47778888888888887653
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=2.2e-10 Score=122.21 Aligned_cols=198 Identities=14% Similarity=0.068 Sum_probs=119.1
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|.....++||+..++.+..++..+. ..+.+.|+|++|+||||+|+++++.....+..... ... ..... ..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~-~~~-------~~~~~-~~ 88 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT-PCG-------VCDNC-RE 88 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS-CCS-------CSHHH-HH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-CCc-------ccHHH-HH
Confidence 3345679999999999999987542 23478899999999999999999877654321100 000 00000 00
Q ss_pred HHHHHhcCCCCCCC-CCccchHHHHH---h-----hcCCceEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 044535 247 LFSRLLEDGDLSLG-ASGLGHTFMNT---R-----LRRKTVLIVLDDVEN--SQQLKNLAGDHGWFGLGSRIIITSRDKQ 315 (1085)
Q Consensus 247 ll~~~~~~~~~~~~-~~~~~~~~l~~---~-----l~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 315 (1085)
+...... .-.... ........+.. . ..+++.+||+||++. ...++.+...+.....+.++|+||+...
T Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 89 IEQGRFV-DLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHTTCCS-SEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HhccCCc-ceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 0000000 000000 00000111111 1 134679999999965 4556666554443456788999987654
Q ss_pred hhhc---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhh
Q 044535 316 VLKT---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCF 377 (1085)
Q Consensus 316 v~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~ 377 (1085)
.... .....+++++++.++..+++...+..... .-..+..+.+++.++|.|..+..+...
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3221 33568999999999999999887754322 122456788999999999988876543
No 149
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.19 E-value=3.1e-11 Score=121.81 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=52.0
Q ss_pred CCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccc-cCCCCCCEEEccCCCchhhhccCCch-hhhcCCCCc
Q 044535 775 SLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSI-DHLPQLSLLSLENCKNILVFLTNLPL-ALLSGLCSL 852 (1085)
Q Consensus 775 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l-~~l~~L~~L~L~~~~~l~~~l~~l~~-~~~~~l~~L 852 (1085)
+|+.|++++|.... + ..+..+++|++|++++|.++.+|..+ ..+++|+.|+|++|. ++.+|. ..+..+++|
T Consensus 43 ~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-----i~~~~~~~~l~~l~~L 115 (176)
T 1a9n_A 43 QFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-----LVELGDLDPLASLKSL 115 (176)
T ss_dssp CCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-----CCCGGGGGGGGGCTTC
T ss_pred CCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-----CCcchhhHhhhcCCCC
Confidence 44444444443322 1 33444555555555555555544332 455555555555554 344432 234455555
Q ss_pred cEEecCCCCCCCCCcc----cCCCCCCCEEECCCCCCC
Q 044535 853 TELHLNDCNLLELPSA----LTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 853 ~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~n~l~ 886 (1085)
+.|++++|.+..+|.. +..+++|+.|++++|...
T Consensus 116 ~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 116 TYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555555555543 555556666666555443
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1e-10 Score=118.13 Aligned_cols=109 Identities=28% Similarity=0.387 Sum_probs=69.0
Q ss_pred CCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCc
Q 044535 774 KSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSL 852 (1085)
Q Consensus 774 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L 852 (1085)
++|+.|++++|......+..+..+++|++|++++|.++.+|.. +..+++|+.|+|++|. ++.++...+..+++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~~~l~~L 102 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-----LQSLPNGVFDKLTQL 102 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-----ccccCHHHhhCCccc
Confidence 3445555555443333333445566666666666666655543 4666677777777766 566666566677777
Q ss_pred cEEecCCCCCCCCCcc-cCCCCCCCEEECCCCCCCc
Q 044535 853 TELHLNDCNLLELPSA-LTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 853 ~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~ 887 (1085)
+.|+|++|.++.+|.. +..+++|+.|++++|.+..
T Consensus 103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7777777777776654 4667888888888887654
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=119.19 Aligned_cols=104 Identities=20% Similarity=0.247 Sum_probs=53.7
Q ss_pred ccccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCC
Q 044535 729 MKYLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGT 808 (1085)
Q Consensus 729 L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~ 808 (1085)
++.|++++|.+..+|..+..+++|+.|+|++|.+....+..+.++++|++|+|++|......+..+..+++|+.|+|++|
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 33334444445555555555666666666665555444444555555555555555444444444555555555555555
Q ss_pred CCcccCc-cccCCCCCCEEEccCCC
Q 044535 809 PIKELPS-SIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 809 ~i~~lp~-~l~~l~~L~~L~L~~~~ 832 (1085)
.++.+|. .+..+++|+.|+|++|+
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCeeChhhhhcCccccEEEeCCCC
Confidence 5554443 24445555555555444
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=4.3e-11 Score=134.12 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=77.7
Q ss_pred CCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-cccCCCCCC-EEEccCCCchhhhccCCchhhhcCCC
Q 044535 773 LKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SIDHLPQLS-LLSLENCKNILVFLTNLPLALLSGLC 850 (1085)
Q Consensus 773 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~-~L~L~~~~~l~~~l~~l~~~~~~~l~ 850 (1085)
+++|+.|+|++|.....-+..|.++++|+.|++.+| ++.++. .+.++++|+ .|++.+ . ++.++...|.+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-----l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-----VTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-----CCEECTTTTTTCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-----ceEEchhhhhCCc
Confidence 677888888776544444456778888888888876 776664 577888888 888887 4 5667777888999
Q ss_pred CccEEecCCCCCCCCCc-ccCCCCCCCEEEC
Q 044535 851 SLTELHLNDCNLLELPS-ALTCLSSLEILGL 880 (1085)
Q Consensus 851 ~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 880 (1085)
+|+.|++++|++..++. .|.++++|+.+..
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998888888765 6888889988864
No 153
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.15 E-value=4.1e-10 Score=129.44 Aligned_cols=282 Identities=13% Similarity=0.036 Sum_probs=163.2
Q ss_pred CCCccccchhHHHHHHhhcc----CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-cceEEEeehhhhhhhhcHHHHH
Q 044535 170 LDGLIGIESRVEKVESLLCI----GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
++.++||+.+++++..++.. .....+.+.|+|++|+||||||+++++...... ...+++.. ........+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~----~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING----FIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET----TTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC----ccCCCHHHHH
Confidence 47899999999999988864 222334899999999999999999999876542 23445432 2223344555
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhc--CCceEEEEeCCCCH--HHHHHHhcCCCCCC----CCCEEEEEeCChhh
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLR--RKTVLIVLDDVENS--QQLKNLAGDHGWFG----LGSRIIITSRDKQV 316 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVLDdv~~~--~~~~~l~~~~~~~~----~gs~IiiTTR~~~v 316 (1085)
..++..+.................+.+.+. +++.+||||+++.. ..+..+........ .+..||+||++...
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 565555432110001111222333444443 56889999999763 44555544332211 36778888887643
Q ss_pred hhc--------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHh---------cCCchHHHHHhhh-h
Q 044535 317 LKT--------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYA---------KGIPLALKVLGCF-L 378 (1085)
Q Consensus 317 ~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~glPLal~~~g~~-L 378 (1085)
... .....+.+++++.++..+++...+........-..+..+.+++++ +|.|-.+..+... .
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 322 122479999999999999998765321111122346678889999 7887544433222 1
Q ss_pred c-----C---CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhccc---CC--CCHHHHHHH----Hhh
Q 044535 379 F-----G---RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFF---KG--DNRDHVTTI----LDG 441 (1085)
Q Consensus 379 ~-----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~---~~--~~~~~l~~~----~~~ 441 (1085)
. + .+.+....+........ + .-.+..|+++++.++..++.+. .+ .....+... ...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~~~---~----~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLFGI---S----EEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSCCC---C----HHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhhhh---H----HHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 1 1 13444444444432211 1 2224567888888888787664 22 222333222 222
Q ss_pred CCCC------cchhhHHHhhccceEEc
Q 044535 442 CGFS------TEIGISVLIDKCLITVT 462 (1085)
Q Consensus 442 ~g~~------~~~~i~~L~~~~Li~~~ 462 (1085)
.|.. ....+..|.++++|...
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 325 YGERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 2321 12457888899998864
No 154
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=4e-10 Score=113.76 Aligned_cols=122 Identities=25% Similarity=0.339 Sum_probs=80.4
Q ss_pred cEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEE
Q 044535 777 EILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSS-IDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTEL 855 (1085)
Q Consensus 777 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~-l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L 855 (1085)
+.++++++. +..+|..+ .++|+.|++++|.++.+|.. +..+++|++|++++|. ++.++...+..+++|+.|
T Consensus 10 ~~l~~~~~~-l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-----IQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSC-CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCEE
T ss_pred CEEEecCCC-CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-----ceEeChhHccCCCccCEE
Confidence 455555543 33344332 35677777777777766643 4667777777777776 666666666777777777
Q ss_pred ecCCCCCCCCCcc-cCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeecccccc
Q 044535 856 HLNDCNLLELPSA-LTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCKR 906 (1085)
Q Consensus 856 ~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~~ 906 (1085)
+|++|.++.+|.. +..+++|+.|++++|.++.++ +..+++|+.|++++|+.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 7777777766543 567777777777777777766 35567777777777653
No 155
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.10 E-value=6.7e-10 Score=116.61 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=115.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-cceEEEeehhhhhhhhcHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
|.....++|++..++++.+++.... .+.+.|+|++|+|||++|+.+++.+.... ...+...+. +...+...+..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 87 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA---SDERGIDVVRH 87 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET---TCTTCHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc---ccccChHHHHH
Confidence 4445779999999999999987543 23488999999999999999998764432 222222111 11122222221
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhhhc---C
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVLKT---G 320 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~---~ 320 (1085)
.+........ ....++.+||+||++.. ...+.+...+.....+.++|+||+....... .
T Consensus 88 -~~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 88 -KIKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp -HHHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred -HHHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence 1111111100 01256889999999764 3344444333333467889999886542211 3
Q ss_pred CCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 321 VDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 321 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
....+++++++.++..+++...+...... -..+..+.+++.++|.|..+..+
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34589999999999999998776432221 22356678889999999865544
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=5.1e-13 Score=137.94 Aligned_cols=109 Identities=24% Similarity=0.244 Sum_probs=52.1
Q ss_pred cccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcC
Q 044535 769 SICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSG 848 (1085)
Q Consensus 769 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~ 848 (1085)
.+..+++|++|++++|.... +| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|. ++.+| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-----l~~l~--~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-----IASLS--GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-----CCCHH--HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-----CCcCC--cccc
Confidence 34444444444444443222 33 4444445555555555554444444444555555555554 33333 2444
Q ss_pred CCCccEEecCCCCCCCCCc--ccCCCCCCCEEECCCCCCC
Q 044535 849 LCSLTELHLNDCNLLELPS--ALTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 849 l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~~n~l~ 886 (1085)
+++|+.|++++|.+..++. .+..+++|+.|++++|.++
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 4555555555555554432 4455555555555555543
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=2.2e-12 Score=133.13 Aligned_cols=133 Identities=26% Similarity=0.291 Sum_probs=104.9
Q ss_pred cccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccc
Q 044535 738 AIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSI 817 (1085)
Q Consensus 738 ~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l 817 (1085)
.++.+|..+..+++|+.|++++|.+.. +| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 455666688888999999999887655 66 7888889999999887654 67777777888999999999888877 57
Q ss_pred cCCCCCCEEEccCCCchhhhccCCch-hhhcCCCCccEEecCCCCCCCCCc-----------ccCCCCCCCEEE
Q 044535 818 DHLPQLSLLSLENCKNILVFLTNLPL-ALLSGLCSLTELHLNDCNLLELPS-----------ALTCLSSLEILG 879 (1085)
Q Consensus 818 ~~l~~L~~L~L~~~~~l~~~l~~l~~-~~~~~l~~L~~L~Ls~n~l~~lp~-----------~l~~l~~L~~L~ 879 (1085)
..+++|+.|++++|. ++.++. ..+..+++|+.|++++|.+...++ .+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~-----i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNK-----ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEE-----CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCc-----CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 788899999999988 666554 467888999999999998875422 266777888776
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=3.4e-09 Score=118.26 Aligned_cols=185 Identities=15% Similarity=0.214 Sum_probs=114.7
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-Ccc-eEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-FEG-CCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~-~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|...+.++|++..++.+.+++..+. .+.+.|+|++|+||||+|+.+++.+... +.. .+++.. +...+...+
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~----~~~~~~~~i- 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA----SDDRGIDVV- 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT----TSCCSHHHH-
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC----ccccChHHH-
Confidence 3445779999999999999987543 2338899999999999999999976432 221 222211 111122221
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhh-cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhh-hc-
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRL-RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVL-KT- 319 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~- 319 (1085)
.+++..+.... ..+ .+++.++|+||++.. ...+.+...+....+++++|+||+...-. ..
T Consensus 90 ~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 90 RNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 12222221100 001 345889999999763 33444443333334678888888765322 11
Q ss_pred -CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch-HHHHHh
Q 044535 320 -GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL-ALKVLG 375 (1085)
Q Consensus 320 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~g 375 (1085)
.....+++++++.++..+++...+...+.. -..+....+++.++|.|. |+..+.
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345689999999999999998776432211 223567789999999995 444443
No 159
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.9e-09 Score=106.88 Aligned_cols=102 Identities=29% Similarity=0.455 Sum_probs=48.7
Q ss_pred cEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEE
Q 044535 777 EILYLFGCSKLEGLPEILESMERLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTEL 855 (1085)
Q Consensus 777 ~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L 855 (1085)
+.++++++. +..+|..+. ++|+.|+|++|.++.+ |..+..+++|+.|+|++|. ++.+|...+..+++|+.|
T Consensus 15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-----LTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-----CCccChhHhCCcchhhEE
Confidence 344444432 233443331 4455555555555544 2344455555555555554 444444444455555555
Q ss_pred ecCCCCCCCCCcc-cCCCCCCCEEECCCCCCC
Q 044535 856 HLNDCNLLELPSA-LTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 856 ~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~ 886 (1085)
+|++|++..+|.. +..+++|+.|+|++|.+.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555555544432 444555555555555443
No 160
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2.9e-09 Score=106.54 Aligned_cols=103 Identities=35% Similarity=0.466 Sum_probs=54.5
Q ss_pred CcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCccc-CccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccE
Q 044535 776 LEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTE 854 (1085)
Q Consensus 776 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~ 854 (1085)
.+.+++++|. +..+|..+ .++|+.|+|++|.++.+ |..+..+++|++|+|++|. ++.++...+..+++|+.
T Consensus 11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-----LTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-----cCccChhhccCCCCCCE
Confidence 3455555533 33344433 24555556665555554 3345555555555555555 45555555555555555
Q ss_pred EecCCCCCCCCCc-ccCCCCCCCEEECCCCCCC
Q 044535 855 LHLNDCNLLELPS-ALTCLSSLEILGLSGNIFE 886 (1085)
Q Consensus 855 L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 886 (1085)
|+|++|++..+|. .+..+++|+.|+|++|.++
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555555555544 2555555555555555544
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=3.4e-08 Score=113.07 Aligned_cols=80 Identities=18% Similarity=0.260 Sum_probs=43.8
Q ss_pred cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCC---CC
Q 044535 816 SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLN---LK 891 (1085)
Q Consensus 816 ~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~---~~ 891 (1085)
.+..+++|+.+.|.++ +..++...|.++++|+.+.|.++ ++.+. ..|.++ +|+.+++.+|.+..++ +.
T Consensus 295 aF~~c~~L~~l~l~~~------i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 295 CLEGCPKLARFEIPES------IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp TTTTCTTCCEECCCTT------CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred HhhCCccCCeEEeCCc------eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 4555566666666532 34455555666666666666443 44443 345666 6667776666665554 33
Q ss_pred CCC-CCCEeeccc
Q 044535 892 PFS-CLTHLNVSY 903 (1085)
Q Consensus 892 ~l~-~L~~L~l~~ 903 (1085)
.++ ++..|.+-.
T Consensus 367 ~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 367 GFPDDITVIRVPA 379 (401)
T ss_dssp CSCTTCCEEEECG
T ss_pred CCCCCccEEEeCH
Confidence 332 455555543
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.91 E-value=5.7e-08 Score=111.15 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=71.2
Q ss_pred ccCCCCCcEEEeeCCCCCCCcc-hhhcCCCCccEEEccCCCCcccC-ccccCCCCCCEEEccCCCchhhhccCCchhhhc
Q 044535 770 ICKLKSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTPIKELP-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLS 847 (1085)
Q Consensus 770 l~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~lp-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~ 847 (1085)
|.++++|+.+.+..+ +..++ ..|.+ .+|+.+.+. +.++.++ ..+..+++|+.+.+.++.........++...|.
T Consensus 222 F~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 222 FLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 444555555555432 22222 22333 455555552 3344443 345666666666666654110011245666677
Q ss_pred CCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeecccc
Q 044535 848 GLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYC 904 (1085)
Q Consensus 848 ~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c 904 (1085)
++++|+.+.|.+ .+..++ ..|.++++|+.+.|..| ++.++ +..+ +|+.|.+.++
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 777888888773 466654 35677777888877543 55554 5666 7777777765
No 163
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=7e-09 Score=104.05 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=44.0
Q ss_pred cCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCc
Q 044535 732 LSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIK 811 (1085)
Q Consensus 732 L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~ 811 (1085)
++++++.+..+|..+. ++|+.|+|++|.+.+..|..+.++++|+.|+|++|......+..+..+++|+.|+|++|.++
T Consensus 17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 3444455555554432 45555555555544444444444444444444444332222222344444444444444444
Q ss_pred ccCcc-ccCCCCCCEEEccCCC
Q 044535 812 ELPSS-IDHLPQLSLLSLENCK 832 (1085)
Q Consensus 812 ~lp~~-l~~l~~L~~L~L~~~~ 832 (1085)
.+|.. +..+++|+.|+|++|+
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSC
T ss_pred eeCHHHhccccCCCEEEeCCCC
Confidence 44332 3334444444444443
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.87 E-value=5.3e-08 Score=111.80 Aligned_cols=145 Identities=11% Similarity=0.079 Sum_probs=89.9
Q ss_pred ccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCCEE
Q 044535 747 ECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLSLL 826 (1085)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L 826 (1085)
....+|+.+.+.... ...-...+..+.+|+.+.+..+ ........+..+..|+.+....+.+. ...+..+.+|+.+
T Consensus 227 ~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i 302 (394)
T 4fs7_A 227 LSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEV 302 (394)
T ss_dssp TTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEE
T ss_pred cccCCCceEEECCCc-eecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec--ccccccccccccc
Confidence 344567777665432 1111234556777777777553 22222345566777777766554321 1245677788888
Q ss_pred EccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeecc
Q 044535 827 SLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVS 902 (1085)
Q Consensus 827 ~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~ 902 (1085)
.+.++ +..++...|.++.+|+.++|.++ ++.+. ..|.++++|+.+.+..+ ++.++ +..+++|+.+++.
T Consensus 303 ~l~~~------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 303 KLLDS------VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp EECTT------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccc------cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 77654 34566666788888888888643 66664 46778888888888765 66665 6777788888776
Q ss_pred c
Q 044535 903 Y 903 (1085)
Q Consensus 903 ~ 903 (1085)
.
T Consensus 375 ~ 375 (394)
T 4fs7_A 375 K 375 (394)
T ss_dssp G
T ss_pred C
Confidence 4
No 165
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.86 E-value=6.8e-09 Score=103.79 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=52.0
Q ss_pred ccCcccccccccCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 731 YLSLSETAIEELPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 731 ~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
.++++++.+..+|..+ .++|+.|+|++|.+.+..|..+..+++|++|+|++|......+..+..+++|++|+|++|.+
T Consensus 13 ~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 13 TVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 3444555555565544 25566666666655555455555555555555555544433333345555555555555555
Q ss_pred cccCc-cccCCCCCCEEEccCCC
Q 044535 811 KELPS-SIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 811 ~~lp~-~l~~l~~L~~L~L~~~~ 832 (1085)
+.+|. .+..+++|+.|+|++|+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhcCCCCCCEEEeCCCC
Confidence 54443 24445555555555544
No 166
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=1.8e-08 Score=112.52 Aligned_cols=185 Identities=17% Similarity=0.159 Sum_probs=114.0
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-cc-eEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EG-CCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~-~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|...+.++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.+.... .. .+.+ +. +...+...+.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~-~~---~~~~~~~~~~ 94 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLEL-NA---SDERGINVIR 94 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEE-ET---TCHHHHHTTH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEe-ec---cccCchHHHH
Confidence 4456789999999999999987543 33488999999999999999999764332 11 1222 11 1111111111
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhhh-hc--
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQVL-KT-- 319 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v~-~~-- 319 (1085)
..+....... ....+++.++|+|+++.. ...+.+.........+.++|+||....-. ..
T Consensus 95 -~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 95 -EKVKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp -HHHHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 1111111000 001256789999999753 44555554443334678899988765322 11
Q ss_pred CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 320 GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 320 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
.....+++++++.++..+++...+...+. .-..+..+.+++.++|.|-.+..+.
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 23357899999999999999877643221 1223567789999999998655443
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.76 E-value=8.6e-10 Score=125.10 Aligned_cols=139 Identities=22% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCCCEEEccCCccccccccc-ccCCCCCcEEEeeCCCCCCCcchhh-----cCCCCccEEEccCCCCcc-----cCcccc
Q 044535 750 TELTVLRLQKCKRLKRVSSS-ICKLKSLEILYLFGCSKLEGLPEIL-----ESMERLETLYLAGTPIKE-----LPSSID 818 (1085)
Q Consensus 750 ~~L~~L~L~~~~~~~~l~~~-l~~l~~L~~L~L~~~~~l~~lp~~l-----~~l~~L~~L~L~~~~i~~-----lp~~l~ 818 (1085)
++|+.|+|++|.+....... ...+++|+.|+|++|.....-...+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 46666666666543321111 1234466677776665443222222 235667777777777652 344455
Q ss_pred CCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-----CCcccCCCCCCCEEECCCCCCCcCC
Q 044535 819 HLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-----LPSALTCLSSLEILGLSGNIFESLN 889 (1085)
Q Consensus 819 ~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l~ 889 (1085)
.+++|++|+|++|.-.......+ ...+...++|+.|+|++|.++. ++..+..+++|++|+|++|.++..+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L-~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELL-AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHH-HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHH-HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 66777777777776111111111 1234455677777777777763 3344555667777777777766543
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.70 E-value=2.4e-07 Score=103.26 Aligned_cols=262 Identities=16% Similarity=0.076 Sum_probs=149.3
Q ss_pred cCCCCCccccchhHHHHHHhhccC---CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIG---LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|...+.++|++..++++..++... ......+.|+|++|+|||++|+++++.....| .++. .... .....+
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~---~~~~~l 80 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAI---EKPGDL 80 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTC---CSHHHH
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-cccc---CChHHH
Confidence 345678999999999988877521 12335688999999999999999998774332 2221 1111 111111
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcCCCC------------------CCC
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--QLKNLAGDHGW------------------FGL 303 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~------------------~~~ 303 (1085)
...+. .. ..++.+|+||+++... ..+.+...+.. ..+
T Consensus 81 ----~~~l~------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 81 ----AAILA------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp ----HHHHT------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred ----HHHHH------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 11110 00 1356789999997642 22323211110 012
Q ss_pred CCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhhc
Q 044535 304 GSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFLF 379 (1085)
Q Consensus 304 gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L~ 379 (1085)
+.++|.||........ .....+.+++++.+|..+++...+..... .-..+....++++++|.|-.+..+...+.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4567777764432221 23368999999999999999877643322 22246678899999999987776654332
Q ss_pred C---------CCHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccCC--CCHHHHHHHHhhCCCCc--
Q 044535 380 G---------RSKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFKG--DNRDHVTTILDGCGFST-- 446 (1085)
Q Consensus 380 ~---------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~--~~~~~l~~~~~~~g~~~-- 446 (1085)
. -+.+....++.. +...+..+++.++..+..++....+ .....+...+ |...
T Consensus 216 ~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~t 280 (324)
T 1hqc_A 216 DFAQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGT 280 (324)
T ss_dssp TTSTTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHH
Confidence 1 133344333332 2234566788888888776654433 2344444433 3221
Q ss_pred -chhhH-HHhhccceEEcCCceeechHHHHH
Q 044535 447 -EIGIS-VLIDKCLITVTDDRLLMHDLLQEM 475 (1085)
Q Consensus 447 -~~~i~-~L~~~~Li~~~~~~~~mHdli~~~ 475 (1085)
...++ .+++.++|+.......+-+...++
T Consensus 281 l~~~l~~~~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 281 LEEVHEPYLIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp HHHHTHHHHHHTTSEEEETTEEEECHHHHHH
T ss_pred HHHHHhHHHHHhcchhcCCccceecHHHHHH
Confidence 12223 377888988765444444444433
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=4.2e-08 Score=110.62 Aligned_cols=103 Identities=24% Similarity=0.212 Sum_probs=70.9
Q ss_pred EEeeCCCCCCCcchhhcCCCCccEEEccC-CCCcccC-ccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEe
Q 044535 779 LYLFGCSKLEGLPEILESMERLETLYLAG-TPIKELP-SSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELH 856 (1085)
Q Consensus 779 L~L~~~~~l~~lp~~l~~l~~L~~L~L~~-~~i~~lp-~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~ 856 (1085)
+++++++.+..+|. +..+++|+.|+|++ |.++.+| ..+..+++|+.|+|++|. ++.+++..|.++++|+.|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-----LRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-----CCEECTTGGGSCSCCCEEE
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-----cceeCHHHhcCCcCCCEEe
Confidence 45555435556666 77777777777775 7777666 356777777777777777 6667666677777777777
Q ss_pred cCCCCCCCCCcccCCCCCCCEEECCCCCCCc
Q 044535 857 LNDCNLLELPSALTCLSSLEILGLSGNIFES 887 (1085)
Q Consensus 857 Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 887 (1085)
|++|+++.+|..+....+|+.|+|.+|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 7777777776543333337888888777764
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=2.4e-09 Score=121.45 Aligned_cols=156 Identities=19% Similarity=0.135 Sum_probs=111.2
Q ss_pred CCCCCEEEccCCccccccccc----cc-CCCCCcEEEeeCCCCCCCcc-hhhcCCCCccEEEccCCCCccc-----Cccc
Q 044535 749 LTELTVLRLQKCKRLKRVSSS----IC-KLKSLEILYLFGCSKLEGLP-EILESMERLETLYLAGTPIKEL-----PSSI 817 (1085)
Q Consensus 749 l~~L~~L~L~~~~~~~~l~~~----l~-~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~L~~~~i~~l-----p~~l 817 (1085)
+++|+.|+|++|.+....... +. ..++|++|+|++|....... .....+++|+.|+|++|.++.. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999875433222 33 23799999999997654322 2334567899999999998732 2223
Q ss_pred -cCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCC-----CCcccCCCCCCCEEECCCCCCCcCC--
Q 044535 818 -DHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLE-----LPSALTCLSSLEILGLSGNIFESLN-- 889 (1085)
Q Consensus 818 -~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~l~-- 889 (1085)
...++|++|+|++|.-.......++ ..+..+++|++|+|++|.+.. ++..+..+++|+.|+|++|.++..+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLM-EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHH-HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHH-HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3578999999999982111111122 234678999999999999884 4566778889999999999998754
Q ss_pred -----CCCCCCCCEeeccccc
Q 044535 890 -----LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 890 -----~~~l~~L~~L~l~~c~ 905 (1085)
+...++|+.|+|++|+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 3456889999999875
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.63 E-value=8e-07 Score=101.93 Aligned_cols=166 Identities=14% Similarity=0.140 Sum_probs=110.0
Q ss_pred ccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCccccCCCCCC
Q 044535 745 SVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPSSIDHLPQLS 824 (1085)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~ 824 (1085)
.+..+..|+.+.+..+. ..+........+|+.+.+... ....-...+..+..|+.+.+..+...--...+..+..|+
T Consensus 203 ~F~~~~~L~~i~~~~~~--~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 203 CFAECILLENMEFPNSL--YYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTTCTTCCBCCCCTTC--CEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCC
T ss_pred hhccccccceeecCCCc--eEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccc
Confidence 35666777777665543 223333445678888888642 222223456778899999988765543345677888898
Q ss_pred EEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEee
Q 044535 825 LLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLN 900 (1085)
Q Consensus 825 ~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~ 900 (1085)
.+.+.... ++...+..+.+|+.+.+.++ +..++ ..|.++++|+.++|..+ ++.++ +..+.+|+.+.
T Consensus 280 ~~~~~~~~--------i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~ 349 (394)
T 4fs7_A 280 KVIYGSVI--------VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNIN 349 (394)
T ss_dssp EEEECSSE--------ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEEC
T ss_pred eeccCcee--------eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEE
Confidence 88876553 44456788899999999764 66664 46888999999999754 66665 77778888888
Q ss_pred ccccccccccCC--CCCCCCCCeEEEe
Q 044535 901 VSYCKRLQSLQE--FPSPLRLVNLQAH 925 (1085)
Q Consensus 901 l~~c~~L~~lp~--l~~~~~L~~L~i~ 925 (1085)
+..+ ++.++. +..+.+|+.+++.
T Consensus 350 lp~~--l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 350 FPLS--LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCTT--CCEECTTTBTTCTTCCEEEEE
T ss_pred ECcc--ccEehHHHhhCCCCCCEEEEC
Confidence 8643 556653 3444445555543
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.61 E-value=3.6e-08 Score=110.72 Aligned_cols=140 Identities=16% Similarity=0.230 Sum_probs=74.4
Q ss_pred cCcccccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhc--CCCCccEEEccCC--C------Cc
Q 044535 742 LPSSVECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILE--SMERLETLYLAGT--P------IK 811 (1085)
Q Consensus 742 lp~~l~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~--~l~~L~~L~L~~~--~------i~ 811 (1085)
++..+..+|+|+.|.|++|... .++. + .+++|++|+|..|.........+. .+++|+.|+|+.+ . +.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4445566777777777776322 2222 2 367777777776654332222232 5677777776421 1 11
Q ss_pred ccCccc--cCCCCCCEEEccCCCchhhhccCCchhhh--cCCCCccEEecCCCCCCC-----CCcccCCCCCCCEEECCC
Q 044535 812 ELPSSI--DHLPQLSLLSLENCKNILVFLTNLPLALL--SGLCSLTELHLNDCNLLE-----LPSALTCLSSLEILGLSG 882 (1085)
Q Consensus 812 ~lp~~l--~~l~~L~~L~L~~~~~l~~~l~~l~~~~~--~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~ 882 (1085)
.+...+ ..+|+|+.|+|.+|..... .+.... ..+++|++|+|+.|.+.. ++..+..+++|+.|+|++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~----~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNV----VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHH----HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchH----HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 221222 2467777777777762111 011111 245677777777776663 333444566777777776
Q ss_pred CCCCcC
Q 044535 883 NIFESL 888 (1085)
Q Consensus 883 n~l~~l 888 (1085)
|.++..
T Consensus 317 n~i~d~ 322 (362)
T 2ra8_A 317 NYLSDE 322 (362)
T ss_dssp BBCCHH
T ss_pred CcCCHH
Confidence 665543
No 173
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.58 E-value=5.7e-07 Score=99.89 Aligned_cols=179 Identities=12% Similarity=0.116 Sum_probs=114.1
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc-cCcc-eEEEeehhhhhhhhcHHHH
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN-QFEG-CCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~-~~~~~~~~~~s~~~~~~~l 243 (1085)
.|...+.++|++..++.+.+++..+ ..+.+.++|++|+||||+|+.+++.+.. .+.. .+.+ +. +...+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~-~~---~~~~~~--- 82 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-NA---SDERGI--- 82 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE-ET---TSTTCT---
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE-eC---ccccCh---
Confidence 3445577999999999999988654 2333889999999999999999987632 2221 1122 11 110000
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHh-----h-cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTR-----L-RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQ 315 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~-----l-~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~ 315 (1085)
......+... + .+++.++|+|+++.. ...+.+...+....++.++|+||....
T Consensus 83 -------------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 83 -------------------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (319)
T ss_dssp -------------------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGG
T ss_pred -------------------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 0011111111 1 256789999999753 445666666655566788888887654
Q ss_pred h-hhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 316 V-LKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 316 v-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
- ... .....+++.+++.++..+++...+...+. .-..+....+++.++|.+-.+...
T Consensus 144 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 144 RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 221 34468999999999999999877643222 122456678888999998755443
No 174
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.7e-07 Score=105.49 Aligned_cols=99 Identities=17% Similarity=0.104 Sum_probs=71.0
Q ss_pred Ccccc-cccccCcccccCCCCCEEEccC-CcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCC
Q 044535 733 SLSET-AIEELPSSVECLTELTVLRLQK-CKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPI 810 (1085)
Q Consensus 733 ~L~~~-~i~~lp~~l~~l~~L~~L~L~~-~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i 810 (1085)
+++++ .+..+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|......|..|.++++|+.|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44455 6777777 77888888888886 666555556677888888888888766665666777788888888888888
Q ss_pred cccCccccCCCCCCEEEccCCC
Q 044535 811 KELPSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 811 ~~lp~~l~~l~~L~~L~L~~~~ 832 (1085)
+.+|..+.....|+.|+|.+|.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSC
T ss_pred ceeCHHHcccCCceEEEeeCCC
Confidence 7777654433337777777776
No 175
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.53 E-value=5.3e-08 Score=109.32 Aligned_cols=181 Identities=17% Similarity=0.185 Sum_probs=95.5
Q ss_pred ccccccCCCcccEEEccCCCC---------CCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCc
Q 044535 674 VPPAIESLGKLVVLRLDNCRR---------LKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPS 744 (1085)
Q Consensus 674 lp~~i~~l~~L~~L~L~~~~~---------~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~ 744 (1085)
+..++..+++|+.|.+.+... ...++..+..+++|+.|.|++|..+ .++.
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l---------------------~l~~ 189 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL---------------------SIGK 189 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC---------------------BCCS
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc---------------------eecc
Confidence 344556677888887754321 0123333455778888888775211 1122
Q ss_pred ccccCCCCCEEEccCCccccccccccc--CCCCCcEEEeeCCCC-------CCCcchhh--cCCCCccEEEccCCCCcc-
Q 044535 745 SVECLTELTVLRLQKCKRLKRVSSSIC--KLKSLEILYLFGCSK-------LEGLPEIL--ESMERLETLYLAGTPIKE- 812 (1085)
Q Consensus 745 ~l~~l~~L~~L~L~~~~~~~~l~~~l~--~l~~L~~L~L~~~~~-------l~~lp~~l--~~l~~L~~L~L~~~~i~~- 812 (1085)
+ .+++|+.|+|..|.........+. .+|+|+.|+|+.+.. ...+...+ ..+++|+.|+|.+|.+..
T Consensus 190 -~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~ 267 (362)
T 2ra8_A 190 -K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV 267 (362)
T ss_dssp -C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred -c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence 2 256777777766654332222232 567777777653211 11111222 246778888887777652
Q ss_pred cCccc---cCCCCCCEEEccCCCchhhhccCCch----hhhcCCCCccEEecCCCCCCC-CCcccCC-CCCCCEEECCCC
Q 044535 813 LPSSI---DHLPQLSLLSLENCKNILVFLTNLPL----ALLSGLCSLTELHLNDCNLLE-LPSALTC-LSSLEILGLSGN 883 (1085)
Q Consensus 813 lp~~l---~~l~~L~~L~L~~~~~l~~~l~~l~~----~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~L~~n 883 (1085)
.+..+ ..+++|++|+|+.|. ++.... ..+..+++|+.|+|++|.+++ .-..+.. + ...++++++
T Consensus 268 ~~~~la~a~~~~~L~~LdLs~n~-----L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 268 VVEMFLESDILPQLETMDISAGV-----LTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp HHHHHHHCSSGGGCSEEECCSSC-----CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred HHHHHHhCccCCCCCEEECCCCC-----CChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 11111 346778888887776 322111 112456788888888887763 1111111 1 345777776
Q ss_pred C
Q 044535 884 I 884 (1085)
Q Consensus 884 ~ 884 (1085)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.52 E-value=5.7e-07 Score=102.38 Aligned_cols=195 Identities=14% Similarity=0.070 Sum_probs=113.0
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEEL 247 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~l 247 (1085)
...+.++|++..++.+...+..+. ..+.+.|+|++|+||||+|+.+++.+....... ...+. . ... ...+
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~~----~---~~~-~~~~ 82 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATPCG----V---CDN-CREI 82 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSCCS----S---SHH-HHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCCCc----c---cHH-HHHH
Confidence 345679999999999999886542 234678999999999999999998764322100 00000 0 000 0000
Q ss_pred HHH----HhcCCCCCCCCCccchHHHHHhh-----cCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 044535 248 FSR----LLEDGDLSLGASGLGHTFMNTRL-----RRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQV 316 (1085)
Q Consensus 248 l~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~v 316 (1085)
... +...........+. ...+.+.+ .+++.++|+||++.. ...+.+...+.....+..+|++|....-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred hccCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 000 00000000001111 12222222 246789999999653 4455554443333456777877765432
Q ss_pred -hhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 317 -LKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 317 -~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
... .....+++++++.++..+++...+-..+. .-..+....+++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 221 34578999999999999999876532221 1123556789999999998776554
No 177
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=1.8e-07 Score=95.17 Aligned_cols=51 Identities=29% Similarity=0.436 Sum_probs=42.2
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...+.++||+..++++.+.+... ..+.+.|+|++|+||||+|+++++.+..
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34577999999999999988653 3456789999999999999999987644
No 178
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=7.7e-06 Score=93.66 Aligned_cols=124 Identities=16% Similarity=0.173 Sum_probs=66.9
Q ss_pred cccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhc
Q 044535 769 SICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLS 847 (1085)
Q Consensus 769 ~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~ 847 (1085)
.+.++.+|+.+.+... ....-...+.++++|+.+.+. +.++.++. .+..+.+|+.+.|..+ ++.+....|.
T Consensus 260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~------v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG------ITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT------CCEECTTTTT
T ss_pred eeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc------ccEehHhHhh
Confidence 3455566666665432 111122345566667776664 34555543 4566677777777543 3455555677
Q ss_pred CCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCCCCCCCCCCEeec
Q 044535 848 GLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLNLKPFSCLTHLNV 901 (1085)
Q Consensus 848 ~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~~~~l~~L~~L~l 901 (1085)
++.+|+.+.|..+ ++.+. ..|.++++|+.+++.++....-.+..+.+|+.+.+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPV 385 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-----
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEe
Confidence 7777777777543 55554 35777777777777765422212334444554444
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.41 E-value=5.9e-06 Score=92.50 Aligned_cols=248 Identities=16% Similarity=0.095 Sum_probs=138.3
Q ss_pred cCCCCCccccchhHHHHHHhhccC---CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIG---LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|...+.++|++..++++..++... ......|.|+|++|+|||++|++++++....|- .+. .... ....
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~-~~~~---~~~~-- 95 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA-APMI---EKSG-- 95 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE-GGGC---CSHH--
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec-chhc---cchh--
Confidence 335678999999999998888642 233456889999999999999999887644432 121 1000 0111
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhh--cCCceEEEEeCCCCH--HHHHHHhcCCCC------------------C
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRL--RRKTVLIVLDDVENS--QQLKNLAGDHGW------------------F 301 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVLDdv~~~--~~~~~l~~~~~~------------------~ 301 (1085)
.+...+ ..+..+|+||+++.. .....+...+.. .
T Consensus 96 ------------------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 96 ------------------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp ------------------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred ------------------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecC
Confidence 111111 235678999999753 222233221110 0
Q ss_pred CCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhh
Q 044535 302 GLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCF 377 (1085)
Q Consensus 302 ~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~ 377 (1085)
.++.++|.||........ .....+.+++++.++..+++...+-.... .-..+..+.+++.+.|.|-.+..+...
T Consensus 152 ~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 152 LPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp CCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 123566666665332211 34478999999999999999877643221 122456678888899998554433322
Q ss_pred h------cCC---CHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccCCC--CHHHHHHHHhhCCCCc
Q 044535 378 L------FGR---SKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFKGD--NRDHVTTILDGCGFST 446 (1085)
Q Consensus 378 L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~ 446 (1085)
+ .+. +.+....++.. +..+...++..+++.+..++-. .+. ....+...+.-..-..
T Consensus 230 ~~~~a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl 296 (338)
T 3pfi_A 230 VRDFADVNDEEIITEKRANEALNS------------LGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTI 296 (338)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHH
T ss_pred HHHHHHhhcCCccCHHHHHHHHHH------------hCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHH
Confidence 1 111 23333332222 3334455666666666666554 322 2444444332111112
Q ss_pred chhhH-HHhhccceEEc
Q 044535 447 EIGIS-VLIDKCLITVT 462 (1085)
Q Consensus 447 ~~~i~-~L~~~~Li~~~ 462 (1085)
...++ .|++.++|...
T Consensus 297 ~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 297 EDVIEPYLLANGYIERT 313 (338)
T ss_dssp HHTTHHHHHHTTSEEEE
T ss_pred HHHHhHHHHHcCceecC
Confidence 22344 78888998776
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=8.7e-06 Score=91.70 Aligned_cols=195 Identities=14% Similarity=0.130 Sum_probs=110.6
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc--cCcceEEEeehhhhhhhhcHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN--QFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
|.....++|++..++.+..++..+.. +.+.|+|++|+||||+|+.+++.+.. .+...+.-.+. +...+...+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~---~~~~~~~~~~ 107 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA---SDERGISIVR 107 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS---SSCCCHHHHT
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc---ccccchHHHH
Confidence 44567899999999999999865432 23889999999999999999987642 12211111111 1111222221
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhc--
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQ-VLKT-- 319 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~-- 319 (1085)
+.+.......... .. .......-..++-+|++|+++.. .....+...+.......++|++|.... +...
T Consensus 108 -~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 108 -EKVKNFARLTVSK--PS---KHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp -THHHHHHHSCCCC--CC---TTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred -HHHHHHhhhcccc--cc---hhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 1111111111000 00 00011111235579999998653 333444333322234677888775443 2111
Q ss_pred CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 320 GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 320 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
.....+++++++.++..+.+...+..... .-..+..+.+++.++|.|-.+..+
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENV--KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22347899999999999999876633221 122456788999999998764443
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.35 E-value=6.4e-06 Score=92.64 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=113.7
Q ss_pred cHHHHHHHHHHHHhhcccccccCCCCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHH
Q 044535 146 SEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 146 ~e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~ 215 (1085)
.+..+++.+...+..+. ++...+.++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||++++
T Consensus 62 ~~~~~~~~i~~~i~~~~---~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG---PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp SCHHHHHHHHHHTBCCS---CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC---CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHH
Confidence 45666777776665443 344557899999999999887642 11234678899999999999999999
Q ss_pred HHHhccCcceEEEeehhhhhhhh-c-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH-----
Q 044535 216 DRIANQFEGCCFLENVREESAKR-G-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----- 288 (1085)
Q Consensus 216 ~~~~~~F~~~~~~~~~~~~s~~~-~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----- 288 (1085)
+.....| +.+ +........ + ..... ...+......++.+|+||+++..
T Consensus 139 ~~~~~~~---~~i-~~~~l~~~~~g~~~~~~---------------------~~~~~~a~~~~~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 139 SQSGATF---FSI-SASSLTSKWVGEGEKMV---------------------RALFAVARCQQPAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp HHTTCEE---EEE-EGGGGCCSSTTHHHHHH---------------------HHHHHHHHHTCSEEEEEETHHHHTBC--
T ss_pred HHcCCeE---EEE-ehHHhhccccchHHHHH---------------------HHHHHHHHhcCCeEEEEeCchhhhccCC
Confidence 8764322 122 211111000 0 00000 11112222356789999998533
Q ss_pred --------HHHHHHh----cCCCCCCCCCEEEEEeCChhhhh-c---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCC
Q 044535 289 --------QQLKNLA----GDHGWFGLGSRIIITSRDKQVLK-T---GVDEMYEVEELNCREALQLFSLNAFKLNHPTED 352 (1085)
Q Consensus 289 --------~~~~~l~----~~~~~~~~gs~IiiTTR~~~v~~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 352 (1085)
..+..+. +.......+..||.||....... . .....+.++..+.++..+++...+-..... -
T Consensus 194 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l 271 (357)
T 3d8b_A 194 DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--L 271 (357)
T ss_dssp ----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--C
T ss_pred CCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--c
Confidence 1122222 21111123445555665443221 1 344678899999999999987766332211 1
Q ss_pred HHHHHHHHHHHhcC-CchHHHHHhh
Q 044535 353 YMGLSNQVVHYAKG-IPLALKVLGC 376 (1085)
Q Consensus 353 ~~~~~~~i~~~~~g-lPLal~~~g~ 376 (1085)
..+....+++.+.| .+-.+..+..
T Consensus 272 ~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23456778888888 4555665543
No 182
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=4.1e-06 Score=99.23 Aligned_cols=191 Identities=16% Similarity=0.188 Sum_probs=106.3
Q ss_pred cCCCCCccccchhHHHHHHhhccCC---------------CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeeh
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGL---------------VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENV 231 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~---------------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~ 231 (1085)
|.....++|++..++++.+++.... +..+.+.|+|++|+||||+|+++++... +. .+.+. .
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-A 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-T
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-C
Confidence 3456789999999999999986410 1346889999999999999999998872 22 22221 1
Q ss_pred hhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--------HHHHHHhcCCCCCCC
Q 044535 232 REESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--------QQLKNLAGDHGWFGL 303 (1085)
Q Consensus 232 ~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--------~~~~~l~~~~~~~~~ 303 (1085)
+..... ......+.......... ........ ......++.+||+|+|+.. ..+..+... .
T Consensus 111 ---s~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~-----~ 178 (516)
T 1sxj_A 111 ---SDVRSK-TLLNAGVKNALDNMSVV-GYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK-----T 178 (516)
T ss_dssp ---TSCCCH-HHHHHTGGGGTTBCCST-TTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH-----C
T ss_pred ---CCcchH-HHHHHHHHHHhccccHH-HHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh-----c
Confidence 111111 11222221111111000 00000000 0012357889999999643 223333322 2
Q ss_pred CCEEEEEeCChh---hhhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHHh
Q 044535 304 GSRIIITSRDKQ---VLKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVLG 375 (1085)
Q Consensus 304 gs~IiiTTR~~~---v~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~g 375 (1085)
+..||+++.+.. +... .....+++++++.++..+.+...+....... ..+....|++.++|.+ -++..+.
T Consensus 179 ~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 179 STPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp SSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 345666655432 2222 4456889999999999999877664322211 1234678888998854 4555543
No 183
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.33 E-value=4.1e-06 Score=91.23 Aligned_cols=181 Identities=16% Similarity=0.249 Sum_probs=102.4
Q ss_pred ccCCCCCccccchhHHHHHHhhccC-----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhh
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIG-----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREE 234 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~ 234 (1085)
+....+.++|++..+++|.+.+... ....+.+.|+|++|+|||+||+++++.....|- .+ .....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~---~v-~~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFI---RV-VGSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE---EE-EGGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EE-ehHHH
Confidence 3345678999999999998877421 123456889999999999999999987644332 12 11111
Q ss_pred hhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCC
Q 044535 235 SAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDH 298 (1085)
Q Consensus 235 s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~ 298 (1085)
.... .... .. .....+......++.+|+||+++.. ..+..+....
T Consensus 88 ~~~~-~~~~-~~-----------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 88 VKKF-IGEG-AS-----------------LVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp CCCS-TTHH-HH-----------------HHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred HHhc-cchH-HH-----------------HHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 0000 0000 00 0011122223346689999999654 1122232221
Q ss_pred C--CCCCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCCC-CCHHHHHHHHHHHhcC-Cc
Q 044535 299 G--WFGLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHPT-EDYMGLSNQVVHYAKG-IP 368 (1085)
Q Consensus 299 ~--~~~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~g-lP 368 (1085)
. ....+..||.||........ .....+.++..+.++..+++..++....... .. ...++..+.| .|
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~ 224 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVG 224 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCH
Confidence 1 11245677777775433321 2345789999999999999988764433221 12 3456666666 34
Q ss_pred hHHHH
Q 044535 369 LALKV 373 (1085)
Q Consensus 369 Lal~~ 373 (1085)
-.+..
T Consensus 225 ~~i~~ 229 (285)
T 3h4m_A 225 AELKA 229 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 34443
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.31 E-value=9.5e-06 Score=87.64 Aligned_cols=168 Identities=18% Similarity=0.117 Sum_probs=90.4
Q ss_pred CCccccchhHHHHHH-------hhcc-CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHH
Q 044535 171 DGLIGIESRVEKVES-------LLCI-GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHR 242 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~ 242 (1085)
..++|....++++.. .+.. .....+.+.|+|++|+|||++|+++++.....| +.+....... ......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~-g~~~~~ 108 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI-GFSETA 108 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT-TCCHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc-CCchHH
Confidence 457787777666554 2221 234567889999999999999999999754332 1221111000 000000
Q ss_pred HHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH------------HHHHHHhc---CCCCCCCCCEE
Q 044535 243 LQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS------------QQLKNLAG---DHGWFGLGSRI 307 (1085)
Q Consensus 243 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~------------~~~~~l~~---~~~~~~~gs~I 307 (1085)
... .....+......+..+|+||+++.. ..++.+.. .....+....|
T Consensus 109 ~~~------------------~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 109 KCQ------------------AMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp HHH------------------HHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred HHH------------------HHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 000 0111222233356789999998653 12333332 22212334456
Q ss_pred EEEeCChhhhhc-----CCCeEEEeecCCH-HHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC
Q 044535 308 IITSRDKQVLKT-----GVDEMYEVEELNC-REALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 308 iiTTR~~~v~~~-----~~~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 367 (1085)
|.||........ .....+++++++. ++-.+++.... . -..+....+++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~----~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N----FKDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C----SCHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C----CCHHHHHHHHHHhcCC
Confidence 777776644321 2356789999988 55555554421 1 1234567788888773
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=9.4e-07 Score=93.59 Aligned_cols=173 Identities=12% Similarity=0.069 Sum_probs=99.5
Q ss_pred CCCCCccccc---hhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHH
Q 044535 168 GALDGLIGIE---SRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 168 ~~~~~~vGr~---~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
...+.++|.+ ..++.+..+.... ..+.+.|+|++|+||||+|+.+++........+.|+... ..... +
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~-~~~~~--~---- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG-IHASI--S---- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG-GGGGS--C----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH-HHHHH--H----
Confidence 3456788743 4556666665432 346788999999999999999999776554445555321 11100 0
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHH----HHHHhcCCCC-CCCCC-EEEEEeCChhh--
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQ----LKNLAGDHGW-FGLGS-RIIITSRDKQV-- 316 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~----~~~l~~~~~~-~~~gs-~IiiTTR~~~v-- 316 (1085)
... + +.+ .++.+||+||++.... .+.+...+.. ...+. ++|+||+...-
T Consensus 96 ------------------~~~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 96 ------------------TAL---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ------------------GGG---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ------------------HHH---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 000 0 011 3467899999864311 2222211100 01122 58888774321
Q ss_pred -------hhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 044535 317 -------LKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVL 374 (1085)
Q Consensus 317 -------~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 374 (1085)
... .....+++++++.++..+++...+..... .-..+..+.+++.++|.+-.+..+
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 111 12278999999999999999877643221 223456778888999887665544
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.28 E-value=2.6e-05 Score=86.45 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=103.3
Q ss_pred ccCCCCCccccchhHHHHHHhhc----------cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhh
Q 044535 166 SSGALDGLIGIESRVEKVESLLC----------IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s 235 (1085)
++...+.++|.+..+++|.+++. ......+-|.|+|++|+|||+||+++++.....|- .+ +.....
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~---~v-~~~~l~ 88 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF---SV-SSSDLV 88 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE---EE-EHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE---EE-chHHHh
Confidence 34455789999999999988762 11122456889999999999999999998654331 12 211110
Q ss_pred hh-h-cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhc---C
Q 044535 236 AK-R-GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-------------QLKNLAG---D 297 (1085)
Q Consensus 236 ~~-~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~---~ 297 (1085)
.. . ......+ ..+......++.+|+||+++... ....+.. .
T Consensus 89 ~~~~g~~~~~~~---------------------~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 89 SKWMGESEKLVK---------------------QLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG 147 (322)
T ss_dssp TTTGGGHHHHHH---------------------HHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG
T ss_pred hcccchHHHHHH---------------------HHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc
Confidence 00 0 0001111 11222223467899999997431 1222221 1
Q ss_pred CCCCCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-chHHH
Q 044535 298 HGWFGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI-PLALK 372 (1085)
Q Consensus 298 ~~~~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~ 372 (1085)
......+..||.||.....+.. .....+.++..+.++..+++..++...... ........+++.+.|. +-.|.
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 148 VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp GGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHH
T ss_pred ccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHH
Confidence 1122345566667765433221 345678899999999999998877432211 1223456777777763 43444
Q ss_pred HH
Q 044535 373 VL 374 (1085)
Q Consensus 373 ~~ 374 (1085)
.+
T Consensus 226 ~l 227 (322)
T 3eie_A 226 VV 227 (322)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 187
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.26 E-value=3.5e-06 Score=91.75 Aligned_cols=162 Identities=11% Similarity=0.113 Sum_probs=94.7
Q ss_pred CccccchhHHHHHHhhcc--CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc-------ceEEEeehhhhhhhhcHHH
Q 044535 172 GLIGIESRVEKVESLLCI--GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE-------GCCFLENVREESAKRGVHR 242 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-------~~~~~~~~~~~s~~~~~~~ 242 (1085)
.+.||++++++|...|.. .......+.|+|++|+|||++|+++++++..... ..+++.+.. ......
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHHH
Confidence 388999999999877753 2345677889999999999999999998754221 234443322 223344
Q ss_pred HHHHHHHHHhcCCCCCCCCCccchHHHHHhh------cCCceEEEEeCCCCHH---HHHHHhcCCCCCCCCCEE--EEEe
Q 044535 243 LQEELFSRLLEDGDLSLGASGLGHTFMNTRL------RRKTVLIVLDDVENSQ---QLKNLAGDHGWFGLGSRI--IITS 311 (1085)
Q Consensus 243 l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l------~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~I--iiTT 311 (1085)
+...+..++.+.. ... ......+.+.+ .++++++|||+++... .+-.+..... ...+++ |.++
T Consensus 97 ~~~~I~~~L~g~~-~~~---~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~--~~~s~~~vI~i~ 170 (318)
T 3te6_A 97 LYEKIWFAISKEN-LCG---DISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS--SKNSKLSIICVG 170 (318)
T ss_dssp HHHHHHHHHSCCC---C---CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH--CSSCCEEEEEEC
T ss_pred HHHHHHHHhcCCC-CCc---hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc--ccCCcEEEEEEe
Confidence 5556666665442 111 11222333222 4578999999997642 2322221100 123333 3334
Q ss_pred CChh----hh-h----cCCCeEEEeecCCHHHHHHHHHHhh
Q 044535 312 RDKQ----VL-K----TGVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 312 R~~~----v~-~----~~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
...+ .+ . ......+.+++++.+|-.+++..++
T Consensus 171 n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 171 GHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred cCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 3221 11 1 1223578999999999999998765
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=6.4e-06 Score=92.83 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=105.8
Q ss_pred cCCCCCccccchhHHHHHHhh-ccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehh-------------
Q 044535 167 SGALDGLIGIESRVEKVESLL-CIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVR------------- 232 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~------------- 232 (1085)
|...+.++|.+..++.+.+++ ..+. ... +.|+|+.|+||||+|+.++..+...-.+.+++....
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 445678999999999999988 5432 223 889999999999999999986532222111111000
Q ss_pred ---------hhhhh-hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCC
Q 044535 233 ---------EESAK-RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGW 300 (1085)
Q Consensus 233 ---------~~s~~-~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~ 300 (1085)
..+.. .......++++..+...... ... . .+. .+..++-++|||+++.. ...+.+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~---~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV--DFQ---D-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc--ccc---c-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 00000 00000111222221111000 000 0 000 02346679999999763 223333332222
Q ss_pred CCCCCEEEEEeCChh-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHH
Q 044535 301 FGLGSRIIITSRDKQ-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKV 373 (1085)
Q Consensus 301 ~~~gs~IiiTTR~~~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 373 (1085)
..++..+|++|.+.. +... .....+++++++.++..+.+...+...+..-+ ..+....+++.++|.+-.+..
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHH
Confidence 235678888887543 2222 34478999999999999999876643221111 025567888999998855443
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=7.4e-06 Score=94.69 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=101.3
Q ss_pred CCCcc-ccchhH--HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcc--eEEEeehhhhhhhhcHHHHH
Q 044535 170 LDGLI-GIESRV--EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEG--CCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 170 ~~~~v-Gr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~--~~~~~~~~~~s~~~~~~~l~ 244 (1085)
.+.|| |..... ..+..+...... ...+.|+|++|+||||||+++++.+...++. .+++... .+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~----------~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE----------KFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH----------HHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH----------HHH
Confidence 45566 654443 333433333222 5678899999999999999999988666532 3344211 112
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----HHHHHhcCCCC-CCCCCEEEEEeCChhh---
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----QLKNLAGDHGW-FGLGSRIIITSRDKQV--- 316 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IiiTTR~~~v--- 316 (1085)
.++...+... ....+.+.++.+.-+|+|||++... ..+.+...+.. ...|..||+||....-
T Consensus 173 ~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 173 NDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 2232222211 1223344444467799999995432 22222221110 1347789999886321
Q ss_pred ------hhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 317 ------LKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 317 ------~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
... .....+.+++++.++..+++...+....... ..+....|++.+.|.+-.+.
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 111 2235788999999999999987764222111 12345677888888875443
No 190
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=2.9e-05 Score=83.29 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=98.4
Q ss_pred CCCCccccchhHHHHHHhhcc---C-------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI---G-------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
..++++|.+..++++.+++.. . ....+.+.|+|++|+|||++|+++++.....| +.+. ........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhc
Confidence 356789998888887665431 1 12335678999999999999999999765432 1221 11110000
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-----------------HHHHHhcCCCC-
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-----------------QLKNLAGDHGW- 300 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~- 300 (1085)
.-. ... .....+.......+.+|+||+++... .+..+......
T Consensus 80 ~~~--~~~-----------------~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 80 GGL--GAA-----------------RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp TTH--HHH-----------------HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred cCh--hHH-----------------HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 000 000 01112222233467899999998641 12233322111
Q ss_pred -CCCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch-HHH
Q 044535 301 -FGLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL-ALK 372 (1085)
Q Consensus 301 -~~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~ 372 (1085)
...+..||.||........ .....+.++..+.++..+++..++...... .........+++.+.|.+- .+.
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCHHHHH
Confidence 1234566667765432221 234678899999999999998776433221 1222234677777777654 343
Q ss_pred HH
Q 044535 373 VL 374 (1085)
Q Consensus 373 ~~ 374 (1085)
.+
T Consensus 220 ~l 221 (262)
T 2qz4_A 220 NI 221 (262)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 191
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=0.00018 Score=82.16 Aligned_cols=105 Identities=14% Similarity=0.275 Sum_probs=74.6
Q ss_pred hhhcCCCCccEEEccCCCCcccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccC
Q 044535 792 EILESMERLETLYLAGTPIKELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALT 870 (1085)
Q Consensus 792 ~~l~~l~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~ 870 (1085)
..|.++.+|+.+.+..+...--...+.++++|+.+.+... +..++...|.++.+|+.+.|..+ ++.+. ..|.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR------ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCCc------ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 3567788888888866543322345677888888888643 55677777888888888888754 55554 4678
Q ss_pred CCCCCCEEECCCCCCCcCC---CCCCCCCCEeecccc
Q 044535 871 CLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYC 904 (1085)
Q Consensus 871 ~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c 904 (1085)
++.+|+.+.+..+ ++.++ +..+++|+.+++.++
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 8888888888653 66665 777788888887764
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.16 E-value=3.5e-05 Score=86.46 Aligned_cols=183 Identities=14% Similarity=0.138 Sum_probs=101.6
Q ss_pred cCCCCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh
Q 044535 167 SGALDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA 236 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 236 (1085)
+....+++|.+..++.|.+.+.. .....+-|.|+|++|+|||+||+++++.....| +..+....
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~----~~v~~~~l-- 120 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDL-- 120 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE----EEEEHHHH--
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEeeHHHH--
Confidence 34457899999999999877621 112234578999999999999999999874332 11111111
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCccch-HHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhcCC---C
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASGLGH-TFMNTRLRRKTVLIVLDDVENSQ-------------QLKNLAGDH---G 299 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~---~ 299 (1085)
..... ....... ..+......++.+|+||+++... ....+...+ .
T Consensus 121 -----------~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 182 (355)
T 2qp9_X 121 -----------VSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG 182 (355)
T ss_dssp -----------HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC
T ss_pred -----------hhhhc-------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc
Confidence 00000 0011111 11222223578899999997531 122222211 1
Q ss_pred CCCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-chHHHHH
Q 044535 300 WFGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI-PLALKVL 374 (1085)
Q Consensus 300 ~~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 374 (1085)
....+..||.||........ .....+.++..+.++..+++..++...... -.......|++.+.|. +-.|..+
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV--LTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 11234556656664432211 455778899999999999998776432211 1123456777888774 4344444
Q ss_pred h
Q 044535 375 G 375 (1085)
Q Consensus 375 g 375 (1085)
.
T Consensus 261 ~ 261 (355)
T 2qp9_X 261 V 261 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.16 E-value=2.3e-05 Score=88.72 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=104.9
Q ss_pred CCCccccchhHHHHH---HhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 170 LDGLIGIESRVEKVE---SLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~---~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
.+.+||++..++.+. ..+..+....+.+.|+|++|+|||++|+++++......+.. .+....-.+..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHHH
Confidence 578999999877744 44443333336788999999999999999999886443321 12111111111122222222
Q ss_pred HHHHHhcCC--------------------C-----CCCCC----CccchHHHHHhh-----cCC----ceEEEEeCCCCH
Q 044535 247 LFSRLLEDG--------------------D-----LSLGA----SGLGHTFMNTRL-----RRK----TVLIVLDDVENS 288 (1085)
Q Consensus 247 ll~~~~~~~--------------------~-----~~~~~----~~~~~~~l~~~l-----~~k----r~LlVLDdv~~~ 288 (1085)
.+....+.. . ..... .......+.... .++ +.+|+||+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 222211100 0 00000 111111111111 123 359999999764
Q ss_pred --HHHHHHhcCCCCCCCCCEEEEEeCC------------h-hhhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCC
Q 044535 289 --QQLKNLAGDHGWFGLGSRIIITSRD------------K-QVLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTE 351 (1085)
Q Consensus 289 --~~~~~l~~~~~~~~~gs~IiiTTR~------------~-~v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 351 (1085)
+....+...+..... ..++++|.. . .+... .....+.+++++.++..+++...+-.... .
T Consensus 202 ~~~~~~~L~~~le~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~--~ 278 (368)
T 3uk6_A 202 DIESFSFLNRALESDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV--E 278 (368)
T ss_dssp BHHHHHHHHHHTTCTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--C
T ss_pred ChHHHHHHHHHhhCcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 334444444333222 344545431 1 11111 23345899999999999999877644222 2
Q ss_pred CHHHHHHHHHHHhc-CCchHHHHH
Q 044535 352 DYMGLSNQVVHYAK-GIPLALKVL 374 (1085)
Q Consensus 352 ~~~~~~~~i~~~~~-glPLal~~~ 374 (1085)
-..+..+.+++++. |.|-.+..+
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 23456778888887 777555443
No 194
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.12 E-value=6.3e-05 Score=83.45 Aligned_cols=176 Identities=16% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCCCcc-ccchh--HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHH
Q 044535 169 ALDGLI-GIESR--VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQE 245 (1085)
Q Consensus 169 ~~~~~v-Gr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~ 245 (1085)
..+.|| |.... ...+..+..........+.|+|++|+||||||+.+++.....-...+++.. .. +..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~-~~---------~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA-DD---------FAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH-HH---------HHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH-HH---------HHH
Confidence 345665 54433 334455444332234678899999999999999999977543222344421 11 112
Q ss_pred HHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----HHHHHhcCCC-CCCCCCEEEEEeCChhh----
Q 044535 246 ELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----QLKNLAGDHG-WFGLGSRIIITSRDKQV---- 316 (1085)
Q Consensus 246 ~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----~~~~l~~~~~-~~~~gs~IiiTTR~~~v---- 316 (1085)
.+...+... ....+..... +.-+|+|||++... ..+.+...+. ....|.+||+||.....
T Consensus 79 ~~~~~~~~~----------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 79 AMVEHLKKG----------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHT----------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHcC----------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 222222111 1112222232 36789999996532 1222221110 01246688888864321
Q ss_pred -----hhc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch
Q 044535 317 -----LKT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL 369 (1085)
Q Consensus 317 -----~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 369 (1085)
... .....+++++ +.++..+++...+..... .-..+....+++++ |..-
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~--~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL--ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHC-SSHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHhC-CCHH
Confidence 111 2336789999 999999999887743222 12245567788888 7653
No 195
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.11 E-value=3.4e-05 Score=84.50 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=107.3
Q ss_pred HHHHHhhcccc-cccCCCCCccccchhHHHHHHhhccC----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 154 IVKDVLKKLNH-TSSGALDGLIGIESRVEKVESLLCIG----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 154 i~~~i~~~l~~-~~~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+++.+.+.+.. .++...+.++|.+..++.+.+++... ....+.+.|+|++|+||||+|+++++.....|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 44455444433 33445678999999999998876321 11245788999999999999999998764332
Q ss_pred cceEEEeehhhhhhh-h-cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH------------
Q 044535 223 EGCCFLENVREESAK-R-GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS------------ 288 (1085)
Q Consensus 223 ~~~~~~~~~~~~s~~-~-~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~------------ 288 (1085)
- .+.. ...... . ......+ ..+......++.+|+||+++..
T Consensus 83 ~---~i~~-~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~ 137 (297)
T 3b9p_A 83 L---NISA-ASLTSKYVGDGEKLVR---------------------ALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137 (297)
T ss_dssp E---EEES-TTTSSSSCSCHHHHHH---------------------HHHHHHHHTCSEEEEEETGGGTSBCC-----CCS
T ss_pred E---EeeH-HHHhhcccchHHHHHH---------------------HHHHHHHHcCCcEEEeccHHHhccccccCcchHH
Confidence 1 1211 110000 0 0001111 1112222356789999998543
Q ss_pred -HHHHHHhc---CCCC--CCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHH
Q 044535 289 -QQLKNLAG---DHGW--FGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSN 358 (1085)
Q Consensus 289 -~~~~~l~~---~~~~--~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~ 358 (1085)
.....+.. .... .+.+..||.||........ .....+.++..+.++..+++...+-..... -......
T Consensus 138 ~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~ 215 (297)
T 3b9p_A 138 RRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALR 215 (297)
T ss_dssp HHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHH
T ss_pred HHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHH
Confidence 11112221 1111 1234556667765432211 234677888888888888887765332211 1234567
Q ss_pred HHHHHhcCCch-HHHHHh
Q 044535 359 QVVHYAKGIPL-ALKVLG 375 (1085)
Q Consensus 359 ~i~~~~~glPL-al~~~g 375 (1085)
.+++.+.|.+- ++..+.
T Consensus 216 ~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 216 RLAKITDGYSGSDLTALA 233 (297)
T ss_dssp HHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHH
Confidence 78888888775 554443
No 196
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=7.4e-05 Score=84.93 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=39.9
Q ss_pred hcCCCCccEEEccCCCCcccCc-cccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCC
Q 044535 794 LESMERLETLYLAGTPIKELPS-SIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTC 871 (1085)
Q Consensus 794 l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~ 871 (1085)
+.++.+|+.+.+..+ ++.++. .+..+++|+.+.+.++. +..++...|.++.+|+.+.|..+ ++.+. .+|.+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-----i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-----IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-----CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccc-----cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 344444554444322 333332 34455555555555444 44444445555556666655432 44443 24555
Q ss_pred CCCCCEEECCC
Q 044535 872 LSSLEILGLSG 882 (1085)
Q Consensus 872 l~~L~~L~L~~ 882 (1085)
+++|+.+.+..
T Consensus 332 C~~L~~i~ip~ 342 (379)
T 4h09_A 332 CKALSTISYPK 342 (379)
T ss_dssp CTTCCCCCCCT
T ss_pred CCCCCEEEECC
Confidence 66666665543
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=1.2e-05 Score=81.09 Aligned_cols=50 Identities=24% Similarity=0.367 Sum_probs=41.7
Q ss_pred CCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 169 ALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..+.++|++.+++++.+.+... ..+.+.|+|++|+||||+|+++++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999988643 3456689999999999999999987754
No 198
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.09 E-value=6.9e-05 Score=86.69 Aligned_cols=185 Identities=13% Similarity=0.160 Sum_probs=104.1
Q ss_pred ccCCCCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhh
Q 044535 166 SSGALDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s 235 (1085)
++...++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.... ..++..+...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~-- 203 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD-- 203 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH--
Confidence 344557899999999998876621 1123467889999999999999999987611 1111111110
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcCCCCC-
Q 044535 236 AKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS-------------QQLKNLAGDHGWF- 301 (1085)
Q Consensus 236 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~~~- 301 (1085)
+ .....+.. .......+......++.+|+||+++.. .....+...+...
T Consensus 204 -------l----~~~~~g~~------~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 204 -------L----VSKWLGES------EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------------C------CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred -------H----HhhhcchH------HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 0 01111111 111122222233457789999999754 1234454444322
Q ss_pred --CCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-chHHHHH
Q 044535 302 --GLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI-PLALKVL 374 (1085)
Q Consensus 302 --~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 374 (1085)
..+..||.||........ .....+.++..+.++..++|..++...... -.......+++.+.|. +-.|..+
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345666667765433221 345678899999999999998776332211 1123456777777774 3344443
No 199
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.08 E-value=6.7e-05 Score=82.86 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=99.5
Q ss_pred CCCCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHH-hccCcceEEEeehhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRI-ANQFEGCCFLENVREESA 236 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~-~~~F~~~~~~~~~~~~s~ 236 (1085)
...++++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.. ...| +.+. ......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHh
Confidence 3456788999888888765521 11224678899999999999999999876 2222 1121 110000
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCccch-HHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcCCC---
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASGLGH-TFMNTRLRRKTVLIVLDDVENS-------------QQLKNLAGDHG--- 299 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~--- 299 (1085)
. .....+... ..+......++.+|+||+++.. .....+...+.
T Consensus 85 ~--------------------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 85 K--------------------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp S--------------------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred h--------------------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 0 000011111 1112222356789999999764 11222222211
Q ss_pred CCCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc-hHHHHH
Q 044535 300 WFGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP-LALKVL 374 (1085)
Q Consensus 300 ~~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 374 (1085)
....+..||.||........ .....+.++..+.++..+++..++-..... -.......+++.+.|.. -.|..+
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 11234455556654322211 455778899999999999998776332211 12234567777777763 334444
Q ss_pred h
Q 044535 375 G 375 (1085)
Q Consensus 375 g 375 (1085)
.
T Consensus 223 ~ 223 (322)
T 1xwi_A 223 V 223 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=1.7e-05 Score=88.05 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=102.4
Q ss_pred cCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHH
Q 044535 167 SGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
|...+.++|.+..++.+.+++..+. ...++.+.|++|+|||++|+++++.+... .+.+. . + ..+...+ +.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~-~---~-~~~~~~i-~~ 91 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVN-G---S-DCKIDFV-RG 91 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEE-T---T-TCCHHHH-HT
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEc-c---c-ccCHHHH-HH
Confidence 3456789999999999999987442 23567788999999999999999877422 22232 1 1 1122222 12
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH---HHHHHhcCCCCCCCCCEEEEEeCChhhhh-c--C
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ---QLKNLAGDHGWFGLGSRIIITSRDKQVLK-T--G 320 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~---~~~~l~~~~~~~~~gs~IiiTTR~~~v~~-~--~ 320 (1085)
.+....... ...+++-+||+|+++... ..+.+...+.....+.++|+||....-.. . .
T Consensus 92 ~~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 92 PLTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp HHHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred HHHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 122111110 012367899999998754 34444433322234678888887654221 1 2
Q ss_pred CCeEEEeecCCHHHHHHHHH-------HhhccCCCCCCCHHHHHHHHHHHhcCCchH
Q 044535 321 VDEMYEVEELNCREALQLFS-------LNAFKLNHPTEDYMGLSNQVVHYAKGIPLA 370 (1085)
Q Consensus 321 ~~~~~~l~~L~~~ea~~Lf~-------~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 370 (1085)
....+++++++.++..+++. ..+.......+ ..+....+++.++|.+-.
T Consensus 156 R~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 156 RCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIA-DMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBS-CHHHHHHHHHHTCSCTTH
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHhCCCCHHH
Confidence 23578999999888543322 22211111111 125667788888887653
No 201
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.07 E-value=2.5e-05 Score=90.04 Aligned_cols=176 Identities=16% Similarity=0.200 Sum_probs=103.0
Q ss_pred cCCCCCccccchhH---HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 167 SGALDGLIGIESRV---EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
|...+.+||.+..+ ..+...+..+ ..+.+.|+|++|+||||+|+.+++.....|.. +.. ...+...+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a-----~~~~~~~i 91 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVER---ISA-----VTSGVKEI 91 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EET-----TTCCHHHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEe-----ccCCHHHH
Confidence 34567899999888 6777777644 34678899999999999999999987544421 111 11122221
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH--HHHHHhcCCCCCCCCCEEEE-EeCChh--hhh
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ--QLKNLAGDHGWFGLGSRIII-TSRDKQ--VLK 318 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~Iii-TTR~~~--v~~ 318 (1085)
. .++... .......++.+|+||+++... +.+.+...+.. ....+|. ||.+.. +..
T Consensus 92 r-~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 92 R-EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNS 151 (447)
T ss_dssp H-HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCH
T ss_pred H-HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCH
Confidence 1 111110 011123577899999997643 33333333321 1233443 444442 111
Q ss_pred c--CCCeEEEeecCCHHHHHHHHHHhhccCC-----CCCCCHHHHHHHHHHHhcCCchHHH
Q 044535 319 T--GVDEMYEVEELNCREALQLFSLNAFKLN-----HPTEDYMGLSNQVVHYAKGIPLALK 372 (1085)
Q Consensus 319 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~glPLal~ 372 (1085)
. ....++.+++++.++..+++...+-... ....-..+..+.++++++|.+-.+.
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1 3456889999999999999987654311 1111234567788888999875444
No 202
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.05 E-value=7.4e-05 Score=85.15 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=100.8
Q ss_pred ccCCCCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhh
Q 044535 166 SSGALDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s 235 (1085)
.+...+.++|.+..++.|..++.. .....+-|.|+|++|+|||+||++++++....| +..+.....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhh
Confidence 344567899999999999887731 011235788999999999999999988754322 221111100
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCCCccc-hHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhc----C
Q 044535 236 AKRGVHRLQEELFSRLLEDGDLSLGASGLG-HTFMNTRLRRKTVLIVLDDVENS-------------QQLKNLAG----D 297 (1085)
Q Consensus 236 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~-~~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~----~ 297 (1085)
... .+ ..... ...+......++.+|+||+++.. .....+.. .
T Consensus 186 ~~~-------------~g-------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 245 (389)
T 3vfd_A 186 SKY-------------VG-------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV 245 (389)
T ss_dssp --------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH
T ss_pred ccc-------------cc-------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc
Confidence 000 00 00000 11112222345679999999654 01112221 1
Q ss_pred CCCCCCCCEEEEEeCChhhhhc----CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCch-HHH
Q 044535 298 HGWFGLGSRIIITSRDKQVLKT----GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPL-ALK 372 (1085)
Q Consensus 298 ~~~~~~gs~IiiTTR~~~v~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~ 372 (1085)
.........||.||........ .....+.++..+.++..+++...+-..... -..+....+++.+.|..- ++.
T Consensus 246 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 246 QSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp C-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHH
Confidence 1111223455556654332221 344578899999999999998776432221 223456788888888554 555
Q ss_pred HHh
Q 044535 373 VLG 375 (1085)
Q Consensus 373 ~~g 375 (1085)
.+.
T Consensus 324 ~L~ 326 (389)
T 3vfd_A 324 ALA 326 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 203
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.05 E-value=0.00027 Score=80.23 Aligned_cols=145 Identities=13% Similarity=0.158 Sum_probs=87.4
Q ss_pred ccCCCCCEEEccCCcccccccccccCCCCCcEEEeeCCCCCCCcchhhcCCCCccEEEccCCCCcccCc-cccCCCCCCE
Q 044535 747 ECLTELTVLRLQKCKRLKRVSSSICKLKSLEILYLFGCSKLEGLPEILESMERLETLYLAGTPIKELPS-SIDHLPQLSL 825 (1085)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~i~~lp~-~l~~l~~L~~ 825 (1085)
.....+..+.+.... .......+....+|+.+.+..+ ....-...+.++.+|+.+.+..+ ++.+.. .+..+.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 334445555544322 1112233455667777776442 11122245566777888877654 555543 5667788888
Q ss_pred EEccCCCchhhhccCCchhhhcCCCCccEEecCCCCCCCCC-cccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeec
Q 044535 826 LSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLLELP-SALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNV 901 (1085)
Q Consensus 826 L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l 901 (1085)
+.+..+ +..++...+.++++|+.+.+.++.+..++ ..|.++.+|+.+.|..+ ++.++ +..+++|+.+.+
T Consensus 268 i~l~~~------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 268 LNFYAK------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEECCC------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccc------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 887654 34566666788888888888887777765 45778888888888643 55554 455555555554
No 204
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.02 E-value=1.8e-05 Score=87.20 Aligned_cols=149 Identities=11% Similarity=0.069 Sum_probs=86.0
Q ss_pred CccccchhHHHHHHhhcc-------------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc----ceEEEeehhhh
Q 044535 172 GLIGIESRVEKVESLLCI-------------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE----GCCFLENVREE 234 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~----~~~~~~~~~~~ 234 (1085)
.++|.+..++.|.+++.. .......+.|+|++|+|||++|+++++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 478888887777765431 0223456889999999999999999987654321 122221 1110
Q ss_pred hhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc-CCceEEEEeCCC-----------CHHHHHHHhcCCCCCC
Q 044535 235 SAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR-RKTVLIVLDDVE-----------NSQQLKNLAGDHGWFG 302 (1085)
Q Consensus 235 s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVLDdv~-----------~~~~~~~l~~~~~~~~ 302 (1085)
... . .......+...+. .+.-+|+||+++ .......+...+....
T Consensus 111 ~~~--------------------~---~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~ 167 (309)
T 3syl_A 111 VGQ--------------------Y---IGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR 167 (309)
T ss_dssp CCS--------------------S---TTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT
T ss_pred hhh--------------------c---ccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC
Confidence 000 0 0000111111111 134589999997 3344455544433334
Q ss_pred CCCEEEEEeCChhhh------h---cCCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 303 LGSRIIITSRDKQVL------K---TGVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 303 ~gs~IiiTTR~~~v~------~---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
.+..||.||...... . ......+.+++++.++..+++...+-
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 567888888643211 0 12347889999999999999987764
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.00 E-value=9.7e-05 Score=80.86 Aligned_cols=154 Identities=13% Similarity=0.225 Sum_probs=90.5
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA 236 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 236 (1085)
...++++|.+..+++|.+++.. +-...+.|.|+|++|+|||+||+++++.....| +.+ +.
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v-~~----- 82 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI-KG----- 82 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE-CH-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE-Eh-----
Confidence 3456799999988888776642 112345788999999999999999998764322 122 11
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHH----------------HHHHhcCCCC
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQ----------------LKNLAGDHGW 300 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~----------------~~~l~~~~~~ 300 (1085)
..+ .....+.. .......+.......+.+|+||+++.... ...+...+..
T Consensus 83 ----~~l----~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 83 ----PEL----LTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp ----HHH----HHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred ----HHH----HhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 111 11222211 11122233333445778999999975321 1222221111
Q ss_pred --CCCCCEEEEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 301 --FGLGSRIIITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 301 --~~~gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
...+..||.||...... .. .....+.++..+.++..+++..+.-
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHc
Confidence 12345677777654322 11 2456789999999999999877653
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.84 E-value=4.7e-06 Score=84.14 Aligned_cols=116 Identities=18% Similarity=0.078 Sum_probs=56.2
Q ss_pred cccCCCCCcEEEeeCC-CCCC----CcchhhcCCCCccEEEccCCCCcc-----cCccccCCCCCCEEEccCCCchhhhc
Q 044535 769 SICKLKSLEILYLFGC-SKLE----GLPEILESMERLETLYLAGTPIKE-----LPSSIDHLPQLSLLSLENCKNILVFL 838 (1085)
Q Consensus 769 ~l~~l~~L~~L~L~~~-~~l~----~lp~~l~~l~~L~~L~L~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~l~~~l 838 (1085)
.+...++|++|+|++| .... .+...+...++|++|+|++|.+.. +...+...++|++|+|++|.-.....
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455666777777666 4332 133344455666666666666541 23334444556666666655111100
Q ss_pred cCCchhhhcCCCCccEEec--CCCCCCC-----CCcccCCCCCCCEEECCCCCC
Q 044535 839 TNLPLALLSGLCSLTELHL--NDCNLLE-----LPSALTCLSSLEILGLSGNIF 885 (1085)
Q Consensus 839 ~~l~~~~~~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~L~~n~l 885 (1085)
..+. ..+...++|++|+| ++|.+.. +...+...++|+.|+|++|.+
T Consensus 111 ~~l~-~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALV-EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHH-HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHH-HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 0011 12334455555555 4555552 333344445555555555544
No 207
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.84 E-value=0.00022 Score=79.20 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=99.4
Q ss_pred hhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCc---------------------ceEEEeehhhhhh
Q 044535 178 SRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFE---------------------GCCFLENVREESA 236 (1085)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~---------------------~~~~~~~~~~~s~ 236 (1085)
...+.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+..... ...++... ....
T Consensus 9 ~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~ 86 (334)
T 1a5t_A 9 PDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGKN 86 (334)
T ss_dssp HHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTCS
T ss_pred HHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccCC
Confidence 3445566655433 22456889999999999999999987643321 01111000 0000
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK 314 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~ 314 (1085)
..++..+ +++...+... -..+++-++|+|+++.. ...+.+...+....+++.+|++|.+.
T Consensus 87 ~~~i~~i-r~l~~~~~~~-----------------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEH-----------------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHHH-HHHHHHTTSC-----------------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 0111111 1111111000 01245778999999763 34555555444445577888777765
Q ss_pred h-hhhc--CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHh
Q 044535 315 Q-VLKT--GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLG 375 (1085)
Q Consensus 315 ~-v~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g 375 (1085)
. +... .....+++++++.++..+.+.... .-..+....+++.++|.|..+..+.
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3 3332 455789999999999999998765 1123455788999999997665443
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=0.0002 Score=79.94 Aligned_cols=181 Identities=13% Similarity=0.167 Sum_probs=103.7
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEeehhhhhhhhcHHHHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLENVREESAKRGVHRLQEE 246 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ 246 (1085)
.....++|.+..++.+...+..+ ..+.+.++|++|+||||+|+.++..+... +...+.-.+ .+...+...+.+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~~~ir~- 95 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGIDVVRN- 95 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHHHHHT-
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccHHHHHH-
Confidence 34567889988888888888654 23338899999999999999999876432 211111111 111122222221
Q ss_pred HHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCChh-hhhc--CC
Q 044535 247 LFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDKQ-VLKT--GV 321 (1085)
Q Consensus 247 ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~~-v~~~--~~ 321 (1085)
.+........ ...+.+-++|+|+++.. ...+.+...+.......++|++|.... +... ..
T Consensus 96 ~i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 96 QIKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp HHHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 1111111100 01134678899998642 333444333222235667777776442 2221 33
Q ss_pred CeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHH
Q 044535 322 DEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLAL 371 (1085)
Q Consensus 322 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 371 (1085)
...+++.+++.++..+.+...+-.... .-..+..+.+++.++|.+--+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 457899999999988888765522211 112345678888999987643
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=4.8e-06 Score=84.12 Aligned_cols=118 Identities=12% Similarity=0.070 Sum_probs=67.6
Q ss_pred ccccCCCCCEEEccCC-cccc----cccccccCCCCCcEEEeeCCCCCCC----cchhhcCCCCccEEEccCCCCcc---
Q 044535 745 SVECLTELTVLRLQKC-KRLK----RVSSSICKLKSLEILYLFGCSKLEG----LPEILESMERLETLYLAGTPIKE--- 812 (1085)
Q Consensus 745 ~l~~l~~L~~L~L~~~-~~~~----~l~~~l~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~L~~~~i~~--- 812 (1085)
.+...++|++|+|++| .+.. .+...+...++|++|+|++|..... +...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455677777777776 4432 2334455567777777777665432 33445555677777777777762
Q ss_pred --cCccccCCCCCCEEEc--cCCCchhhhccCCchhhhcCCCCccEEecCCCCCC
Q 044535 813 --LPSSIDHLPQLSLLSL--ENCKNILVFLTNLPLALLSGLCSLTELHLNDCNLL 863 (1085)
Q Consensus 813 --lp~~l~~l~~L~~L~L--~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~l~ 863 (1085)
+...+...++|++|+| ++|.-.......+. ..+...++|++|+|++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~-~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA-NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH-HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH-HHHHhCCCcCEEeccCCCCC
Confidence 4455666677777777 55651111111111 13445567777777777654
No 210
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.79 E-value=0.00049 Score=76.44 Aligned_cols=264 Identities=16% Similarity=0.156 Sum_probs=131.7
Q ss_pred CCCCCccccchhHHHHHHhhccC---CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIG---LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQ 244 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~ 244 (1085)
...+.++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|.. . . .... .....+.
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~-s-g~~~--~~~~~l~ 94 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV---T-S-GPVL--VKQGDMA 94 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE---E-E-TTTC--CSHHHHH
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---E-e-chHh--cCHHHHH
Confidence 34567889888888777666432 2234578999999999999999999987543321 1 0 0000 0000000
Q ss_pred HHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCC--------C----------CC
Q 044535 245 EELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWF--------G----------LG 304 (1085)
Q Consensus 245 ~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~--------~----------~g 304 (1085)
.+ ...+ .++-++++|+++.. ...+.+....... + +.
T Consensus 95 -~~----------------------~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~ 150 (334)
T 1in4_A 95 -AI----------------------LTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP 150 (334)
T ss_dssp -HH----------------------HHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CC
T ss_pred -HH----------------------HHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence 00 0111 23446777887542 2223222111000 0 11
Q ss_pred CEEEE-EeCChhhhhc---CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCchHHHHHhhhh--
Q 044535 305 SRIII-TSRDKQVLKT---GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKVLGCFL-- 378 (1085)
Q Consensus 305 s~Iii-TTR~~~v~~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~g~~L-- 378 (1085)
-.++- |++...+... .....+.+++.+.++-.+++.+.+-... .....+.+..|++.+.|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRD 228 (334)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 22332 4443322211 3445689999999999999987763222 12334668899999999996443332211
Q ss_pred ----cCC---CHHHHHHHHHhhhcCCCchHHHHHHhhcCCCCHhHHHHHhhhhcccCCC--CHHHHHHHHhhCCCCcchh
Q 044535 379 ----FGR---SKRDWESALNKLRKNPNMEIQNVLRITYDTLDDEEKAIFLDIACFFKGD--NRDHVTTILDGCGFSTEIG 449 (1085)
Q Consensus 379 ----~~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~a~f~~~~--~~~~l~~~~~~~g~~~~~~ 449 (1085)
.+. +.+.-+.++..+. ....+++...+..+..++-.+.+. ..+.+...........+..
T Consensus 229 ~a~~~~~~~It~~~v~~al~~~~------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~ 296 (334)
T 1in4_A 229 MLTVVKADRINTDIVLKTMEVLN------------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEV 296 (334)
T ss_dssp HHHHHTCSSBCHHHHHHHHHHHT------------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHhC------------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHH
Confidence 111 3344444444332 112345555555554443332222 2333333322211001111
Q ss_pred hH-HHhhccceEEc-CCceeechHHHHHh
Q 044535 450 IS-VLIDKCLITVT-DDRLLMHDLLQEMG 476 (1085)
Q Consensus 450 i~-~L~~~~Li~~~-~~~~~mHdli~~~~ 476 (1085)
.+ .|...++|+.. .+++....-.+.++
T Consensus 297 ~~~~l~~~g~i~~~~~gr~~~~~~~~~~~ 325 (334)
T 1in4_A 297 YEPYLLQAGFLARTPRGRIVTEKAYKHLK 325 (334)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTT
T ss_pred HHHHHHHcCCeecccccHHhhHHHHHHhC
Confidence 12 78889999887 45544443333333
No 211
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.78 E-value=0.00015 Score=84.58 Aligned_cols=148 Identities=15% Similarity=0.145 Sum_probs=83.2
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------cceEEEeehhhhhhhhcHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------EGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~ 241 (1085)
...+.+|||+.+++.+...+.... ..-+.|+|++|+|||++|+.+++.+...+ ...++..+..
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 345679999999999999986532 23457999999999999999999875432 1122221111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh-----
Q 044535 242 RLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQV----- 316 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v----- 316 (1085)
....+. ........+...-..++.+|++| ...+....+...+. ...-++|.+|.....
T Consensus 246 -------~~~~g~------~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 -------TKYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp --------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred -------ccccch------HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhh
Confidence 000000 00111223333334567899999 22222233444433 123455555554331
Q ss_pred -hhc--CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 317 -LKT--GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 317 -~~~--~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
... .....+.++..+.++..+++...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111 223468999999999999998654
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.00067 Score=75.64 Aligned_cols=172 Identities=19% Similarity=0.299 Sum_probs=99.3
Q ss_pred CCCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA 236 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 236 (1085)
...+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- .........
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~s 220 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI----RVSGAELVQ 220 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE----EEEGGGGSC
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce----EEEhHHhhc
Confidence 3447789999999998775532 2233567889999999999999999998765542 111111111
Q ss_pred hh-c-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCC
Q 044535 237 KR-G-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDH 298 (1085)
Q Consensus 237 ~~-~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~ 298 (1085)
.+ + -....+++ +...-...+.+|++|+++... .+..++..+
T Consensus 221 k~vGese~~vr~l---------------------F~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~l 279 (405)
T 4b4t_J 221 KYIGEGSRMVREL---------------------FVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQL 279 (405)
T ss_dssp SSTTHHHHHHHHH---------------------HHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHH---------------------HHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhh
Confidence 10 0 01111111 122223568899999986421 122333222
Q ss_pred CCC--CCCCEEEEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCCc
Q 044535 299 GWF--GLGSRIIITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 299 ~~~--~~gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~glP 368 (1085)
..+ ..+-.||.||-....+ .. ..+..++++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 280 Dg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 280 DGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred hccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 211 2344456666544332 22 457789999999999999998776433222 122 345666676643
No 213
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=1.4e-05 Score=78.59 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=14.6
Q ss_pred CccEEEccCCCCccc-CccccCCCCCCEEEccCCC
Q 044535 799 RLETLYLAGTPIKEL-PSSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 799 ~L~~L~L~~~~i~~l-p~~l~~l~~L~~L~L~~~~ 832 (1085)
.|+.|++++|.++.. -..+..+++|+.|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 355555555544311 1223344444444444444
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.62 E-value=3.8e-05 Score=74.00 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=34.9
Q ss_pred CccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 172 GLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+++|+...++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999998887764322222346799999999999999998753
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.61 E-value=0.00015 Score=72.58 Aligned_cols=50 Identities=20% Similarity=0.146 Sum_probs=33.1
Q ss_pred CCCcccc----chhHHHHHHhhccCC-CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 170 LDGLIGI----ESRVEKVESLLCIGL-VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 170 ~~~~vGr----~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+.+++. ...++.+.+++..-. .....++|+|++|+||||||+.+++.+.
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455543 333444444443211 2346789999999999999999999775
No 216
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.00027 Score=80.07 Aligned_cols=172 Identities=15% Similarity=0.240 Sum_probs=97.1
Q ss_pred cCCCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhh
Q 044535 167 SGALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s 235 (1085)
....+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- ........
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~----~v~~s~l~ 252 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL----KLAAPQLV 252 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGC
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE----EEehhhhh
Confidence 33457799999999988765421 2234577889999999999999999998765432 22211111
Q ss_pred hhh-c-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcC
Q 044535 236 AKR-G-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGD 297 (1085)
Q Consensus 236 ~~~-~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~ 297 (1085)
..+ + -....+.++ ...-...+.+|++|+++... .+..++..
T Consensus 253 ~~~vGese~~ir~lF---------------------~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ 311 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAF---------------------ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQ 311 (434)
T ss_dssp SSCSSHHHHHHHHHH---------------------HHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHH---------------------HHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHH
Confidence 110 0 011111111 11123468899999985321 12233333
Q ss_pred CCCCC--CCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCC
Q 044535 298 HGWFG--LGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 298 ~~~~~--~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~gl 367 (1085)
+..+. .+-.||.||.....+.. ..+..++++..+.++..++|..+.-+.... .-++ ..+++.+.|.
T Consensus 312 ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 312 LDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp HTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred hhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 33222 23345556665443321 345678999999999999998765432221 1222 4556666654
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.58 E-value=0.00064 Score=72.39 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=82.5
Q ss_pred cCCCCCccccchhHHHHHHhhcc---C-------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh
Q 044535 167 SGALDGLIGIESRVEKVESLLCI---G-------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA 236 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 236 (1085)
+...++++|.+..++++.+++.. . ....+-+.|+|++|+||||||+++++.....| +.+.. .....
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~-~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG-SDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECS-CSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeH-HHHHH
Confidence 34457789999888877665421 0 01134578999999999999999998764332 22211 00000
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCc-cchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCCC
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASG-LGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDHG 299 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~-~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~ 299 (1085)
. ...... .....+.......+.++++|+++.. ..+..+...+.
T Consensus 84 ~--------------------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (257)
T 1lv7_A 84 M--------------------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 143 (257)
T ss_dssp S--------------------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH
T ss_pred H--------------------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh
Confidence 0 000000 0111222223345678999998321 11222322111
Q ss_pred C--CCCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 300 W--FGLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 300 ~--~~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
. ...+..||.||........ .....+.++..+.++..+++..+.
T Consensus 144 ~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 1 1234566667765432211 234678888888888888887665
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.58 E-value=0.00058 Score=79.47 Aligned_cols=179 Identities=14% Similarity=0.184 Sum_probs=97.4
Q ss_pred CCCccccchhHHHHHHhhccC-----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 170 LDGLIGIESRVEKVESLLCIG-----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
...++|.+..+++|.+++... ....+-|.|+|++|+|||++|+++++.....| +.+ +........
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~v-n~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEE-EHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEE-EchHhhhhh
Confidence 457999999999998877531 23345688999999999999999988763222 122 211111100
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH-------------HHHHHHhcCCC--CCCC
Q 044535 239 GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS-------------QQLKNLAGDHG--WFGL 303 (1085)
Q Consensus 239 ~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~-------------~~~~~l~~~~~--~~~~ 303 (1085)
.... .......+.....+++.+|+||+++.. .....|...+. ....
T Consensus 279 -~g~~------------------~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 279 -AGES------------------ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp -TTHH------------------HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred -cchh------------------HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 0000 000112233334466789999998321 11122222111 1123
Q ss_pred CCEEEEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCC-chHHHHH
Q 044535 304 GSRIIITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGI-PLALKVL 374 (1085)
Q Consensus 304 gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 374 (1085)
+.+||.||...... .. .....+.++..+.++..+++..++-......+. ...+++..+.|. +-.+..+
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~---~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV---DLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC---CHHHHHHTCTTCCHHHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh---hHHHHHHHccCCcHHHHHHH
Confidence 44556666644321 11 234578999999999999998876432221111 124555666654 4334433
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00092 Score=75.82 Aligned_cols=171 Identities=20% Similarity=0.333 Sum_probs=98.5
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- ..........
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~----~v~~s~l~sk 254 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI----FSPASGIVDK 254 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGTCCS
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehhhhccc
Confidence 346788999999888775532 2234577889999999999999999998765432 2221111111
Q ss_pred h-c-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCC
Q 044535 238 R-G-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHG 299 (1085)
Q Consensus 238 ~-~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~ 299 (1085)
+ + .....+. .+...-...+.+|++|+++... .+..++..+.
T Consensus 255 ~~Gese~~ir~---------------------~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 313 (437)
T 4b4t_L 255 YIGESARIIRE---------------------MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMD 313 (437)
T ss_dssp SSSHHHHHHHH---------------------HHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHH---------------------HHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhh
Confidence 0 0 0011111 1122223578999999986320 1223332221
Q ss_pred C--CCCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCCc
Q 044535 300 W--FGLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 300 ~--~~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~glP 368 (1085)
. ...+..||.||-....+.. ..+..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.-
T Consensus 314 g~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 314 GFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred cccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 1 1234567777765543322 245678899999999999998776433221 2222 45666666643
No 220
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.51 E-value=4.2e-05 Score=75.22 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=45.4
Q ss_pred CcccEEEccCCCCCCccCCcccCCCCccEEEecccCCCccCCCCCCCccccCcccccccccCcccccCCCCCEEEccCCc
Q 044535 682 GKLVVLRLDNCRRLKNLPSSICNLTSLTELALHGCSNITKFPDISGDMKYLSLSETAIEELPSSVECLTELTVLRLQKCK 761 (1085)
Q Consensus 682 ~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~~~~L~~L~L~~~~i~~lp~~l~~l~~L~~L~L~~~~ 761 (1085)
.+|+.||+++|.....--..+..+++|++|+|++|..++. ..+..+...-...++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD---------------~gL~~L~~~~~~~~~L~~L~Ls~C~ 125 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED---------------GCLERLSQLENLQKSMLEMEIISCG 125 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH---------------HHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH---------------HHHHHHHhcccccCCCCEEEcCCCC
Confidence 3566666666653332223345566666676666653322 1111111000001356666666665
Q ss_pred cccc-ccccccCCCCCcEEEeeCCCCCCC
Q 044535 762 RLKR-VSSSICKLKSLEILYLFGCSKLEG 789 (1085)
Q Consensus 762 ~~~~-l~~~l~~l~~L~~L~L~~~~~l~~ 789 (1085)
..+. --..+..+++|++|++++|+.+..
T Consensus 126 ~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 126 NVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred cCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 3322 112345566677777776665543
No 221
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.51 E-value=0.00027 Score=88.98 Aligned_cols=51 Identities=29% Similarity=0.449 Sum_probs=42.1
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...+.+|||+.+++++.+.+.... ...+.++|++|+||||+|+.+++++..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 445779999999999999886532 345689999999999999999998744
No 222
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0013 Score=74.38 Aligned_cols=170 Identities=16% Similarity=0.258 Sum_probs=96.7
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||+||+++++.....|- ..........
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi----~vs~s~L~sk 282 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI----RVIGSELVQK 282 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE----EEEGGGGCCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE----EEEhHHhhcc
Confidence 346789999999998775431 2234577889999999999999999998765442 1111111110
Q ss_pred -hc-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCC
Q 044535 238 -RG-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHG 299 (1085)
Q Consensus 238 -~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~ 299 (1085)
.+ -....+. .+...-...+.+|++|+++... .+..++..+.
T Consensus 283 ~vGesek~ir~---------------------lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 341 (467)
T 4b4t_H 283 YVGEGARMVRE---------------------LFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLD 341 (467)
T ss_dssp SSSHHHHHHHH---------------------HHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH---------------------HHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhh
Confidence 00 0111111 1222224578999999986421 1222222221
Q ss_pred CC--CCCCEEEEEeCChhhh-----hc-CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCC
Q 044535 300 WF--GLGSRIIITSRDKQVL-----KT-GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 300 ~~--~~gs~IiiTTR~~~v~-----~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~gl 367 (1085)
.+ ..+-.||.||-....+ .. ..+..++++..+.++..++|..+.-+.... .-++ ..+++.+.|.
T Consensus 342 g~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 342 GFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNS 414 (467)
T ss_dssp SSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSC
T ss_pred ccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCC
Confidence 11 1233445566433322 22 467789999999999999998776433221 1222 4566667664
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.47 E-value=0.00016 Score=79.50 Aligned_cols=50 Identities=26% Similarity=0.242 Sum_probs=37.1
Q ss_pred CCccccchhHHHHHHhhcc------------CCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 171 DGLIGIESRVEKVESLLCI------------GLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..++|.+..++.+...+.. .......+.|+|++|+|||++|+.+++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578888888887766643 0112346779999999999999999987743
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.46 E-value=1.8e-05 Score=84.03 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=19.8
Q ss_pred CCCCccEEEccCCCCcccC---ccccCCCCCCEEEccCCC
Q 044535 796 SMERLETLYLAGTPIKELP---SSIDHLPQLSLLSLENCK 832 (1085)
Q Consensus 796 ~l~~L~~L~L~~~~i~~lp---~~l~~l~~L~~L~L~~~~ 832 (1085)
++++|+.|+|++|.++.++ ..+..+++|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~ 207 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 207 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence 4556666666666655432 333445555555555554
No 225
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.45 E-value=0.00062 Score=78.51 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=96.2
Q ss_pred CCCCccccchhHHHHHHhhcc--C--------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI--G--------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKR 238 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~ 238 (1085)
..++++|.+..++++.++... . ..-.+-|.|+|++|+||||||++++.+....|- .+ +.......+
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~---~i-s~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF---HI-SGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE---EE-EGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee---eC-CHHHHHHHH
Confidence 456789999888777665431 1 011234789999999999999999997654331 22 111111100
Q ss_pred -cHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCCCCC
Q 044535 239 -GVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDHGWF 301 (1085)
Q Consensus 239 -~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~ 301 (1085)
+.. .......+.......+.+|+||+++.. ..+..+...+..+
T Consensus 90 ~g~~--------------------~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 90 VGVG--------------------AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp TTHH--------------------HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred hccc--------------------HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 000 000112233344467889999998542 1133333222111
Q ss_pred --CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCCCCCHHHHHHHHHHHhcCCc
Q 044535 302 --GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHPTEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 302 --~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 368 (1085)
..+..||.||.....+.. ..+..+.++..+.++..+++..++-......+. + ...+++.+.|..
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~-l~~la~~t~G~s 221 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--N-LEIIAKRTPGFV 221 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--C-HHHHHHTCTTCC
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--h-HHHHHHhcCCCc
Confidence 235566777766543321 244578899999888888887766432211111 1 234677777776
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.45 E-value=0.00036 Score=71.30 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCCCccccch----hHHHHHHhhccCCCc--eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 169 ALDGLIGIES----RVEKVESLLCIGLVD--VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 169 ~~~~~vGr~~----~~~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..+.|++.+. .++.+.+++...... .+.+.|+|++|+||||||+++++........++|+
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4466776553 334455555433221 26788999999999999999999876655555555
No 227
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.41 E-value=8.9e-05 Score=79.71 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=83.7
Q ss_pred CCCCCccccchhHHHHHHhhcc----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
...+.++|.+..++++.+++.. +....+-+.|+|++|+|||+||+++++.....|-. +. ......
T Consensus 8 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~- 82 (268)
T 2r62_A 8 VRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE- 82 (268)
T ss_dssp CCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT-
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH-
Confidence 3457899999998888776541 11112337799999999999999999977544321 11 000000
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-----------------HHHHHhcCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-----------------QLKNLAGDHGW 300 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~~ 300 (1085)
...+.. .......+......++.+|+||+++... .+..+...+..
T Consensus 83 ------------~~~~~~------~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 83 ------------MFVGLG------ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp ------------SCSSSC------SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred ------------hhcchH------HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 000111 0111122333334567899999996531 12223333322
Q ss_pred CC---CCCEEEEEeCChhhhh-----c-CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 301 FG---LGSRIIITSRDKQVLK-----T-GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 301 ~~---~gs~IiiTTR~~~v~~-----~-~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
.. ....||.||....... . .....+.++..+.++..+++...+
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 11 1245666666543221 1 223557778888888777776554
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.39 E-value=0.00088 Score=83.42 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=88.0
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc------CcceEEEeehhhhhhhhcHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ------FEGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~~~~~~s~~~~~~ 241 (1085)
...+.++||+.+++++.+.|... ...-+.|+|.+|+||||+|+.+++++... ....+|..+.....
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------ 254 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------ 254 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---------
T ss_pred CCCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh------
Confidence 34567999999999999988654 23456799999999999999999876432 12233322211100
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccch-HHHHHhhcCCceEEEEeCCCCH----------HHH-HHHhcCCCCCCCCCEEEE
Q 044535 242 RLQEELFSRLLEDGDLSLGASGLGH-TFMNTRLRRKTVLIVLDDVENS----------QQL-KNLAGDHGWFGLGSRIII 309 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVLDdv~~~----------~~~-~~l~~~~~~~~~gs~Iii 309 (1085)
.+. ......+... ..+......++.+|++|+++.. .+. ..+...+. ..+.++|.
T Consensus 255 ----------~~~--~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~ 320 (758)
T 1r6b_X 255 ----------AGT--KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIG 320 (758)
T ss_dssp ----------CCC--CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEE
T ss_pred ----------ccc--cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEE
Confidence 000 0001111111 1122222345789999999754 222 23333332 23456666
Q ss_pred EeCChhhhhc--------CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 310 TSRDKQVLKT--------GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 310 TTR~~~v~~~--------~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
+|........ .....+.++..+.++..+++...+
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6654432111 122368999999999998887543
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.39 E-value=0.00078 Score=83.76 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=84.2
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC------cceEEEeehhhhhhhhcHH
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF------EGCCFLENVREESAKRGVH 241 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F------~~~~~~~~~~~~s~~~~~~ 241 (1085)
...+.+||++.+++++...+.... ..-+.++|++|+|||++|+.+++.+.... ...++..+.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---------- 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---------- 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------
Confidence 345679999999999999986532 23467999999999999999999874321 122222111
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh-----
Q 044535 242 RLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQV----- 316 (1085)
Q Consensus 242 ~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v----- 316 (1085)
.....+. ........+......++.+|++| ...+....+.+.+. ...-++|.||.....
T Consensus 245 ------g~~~~G~------~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 ------GTKYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp --------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred ------cccccch------HHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 0000000 01112233344444678899999 22222333444433 224566666654431
Q ss_pred -hhc--CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 317 -LKT--GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 317 -~~~--~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
... .....+.++..+.++..+++...+
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111 122568999999999999998554
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.0009 Score=73.51 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=37.9
Q ss_pred CccccchhHHHHHHhhccC-------CCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 172 GLIGIESRVEKVESLLCIG-------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
.++|.+..++.+...+... ......+.++|++|+||||+|+.+++.....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 4778888888877766432 1123578999999999999999999976543
No 231
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.0013 Score=73.56 Aligned_cols=170 Identities=16% Similarity=0.258 Sum_probs=95.4
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+++.|.+..+++|.+.+.. +-...+-|.++|++|.|||.||+++++.....|- ..........
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi----~v~~s~l~sk 255 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL----RIVGSELIQK 255 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE----EEESGGGCCS
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE----EEEHHHhhhc
Confidence 346688999999888775431 1233567889999999999999999998765442 2111111111
Q ss_pred h-c-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCCC
Q 044535 238 R-G-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDHG 299 (1085)
Q Consensus 238 ~-~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~ 299 (1085)
+ + .....+.+ +...-...+.+|++|+++.. ..+..++....
T Consensus 256 ~vGesek~ir~l---------------------F~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 256 YLGDGPRLCRQI---------------------FKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SSSHHHHHHHHH---------------------HHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHH---------------------HHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 0 0 01111111 11222356889999988632 11222322221
Q ss_pred C--CCCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCC
Q 044535 300 W--FGLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGI 367 (1085)
Q Consensus 300 ~--~~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~gl 367 (1085)
. ...+-.||.||-..+.+.. ..+..++++..+.++..++|..+.-+.... ..++ ..+++.+.|.
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 1 1234455666655444322 235568888889999999998776433221 1222 4556666654
No 232
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.33 E-value=0.00081 Score=73.19 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=87.2
Q ss_pred ccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh---ccCcceEEEeehhhhhhhhcHHHHHHHHHHHH
Q 044535 175 GIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA---NQFEGCCFLENVREESAKRGVHRLQEELFSRL 251 (1085)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~ 251 (1085)
|-+..++.+...+..+. .+...++|+.|+||||+|+.+++... ..++....+... ....++..+ +++....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~i-r~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHH-HHHHHHH
Confidence 34556677777776553 67888999999999999999987532 112333333211 012233222 2233332
Q ss_pred hcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCCCCCCCCEEEEEeCCh-hhhhc-CCCeEEEe
Q 044535 252 LEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHGWFGLGSRIIITSRDK-QVLKT-GVDEMYEV 327 (1085)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IiiTTR~~-~v~~~-~~~~~~~l 327 (1085)
...+ ..+++-++|+|+++.. ...++|...+....+.+.+|++|.+. .+... ... .+++
T Consensus 75 ~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 75 NYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp TSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred hhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 2111 1235678899999753 44555655444445678888877654 33333 223 8999
Q ss_pred ecCCHHHHHHHHHHhh
Q 044535 328 EELNCREALQLFSLNA 343 (1085)
Q Consensus 328 ~~L~~~ea~~Lf~~~a 343 (1085)
+++++++..+.+...+
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999997765
No 233
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0015 Score=73.99 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=41.6
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
..+++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 346789999999888775531 223456788999999999999999999876544
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.22 E-value=9.1e-05 Score=71.08 Aligned_cols=48 Identities=15% Similarity=0.064 Sum_probs=33.1
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..++|++..++++.+.+..-.....-|.|+|.+|+|||++|+++++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 357899999888877764311122347799999999999999988754
No 235
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.11 E-value=0.0016 Score=75.67 Aligned_cols=50 Identities=28% Similarity=0.315 Sum_probs=38.2
Q ss_pred CCCccccchhHHHHHHhh---ccCCCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 170 LDGLIGIESRVEKVESLL---CIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L---~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+.++|.+..++.+..++ ..+....+-+.++|++|+|||++|+++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 478999999888665544 23322335688999999999999999998775
No 236
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.10 E-value=0.0013 Score=70.40 Aligned_cols=50 Identities=24% Similarity=0.118 Sum_probs=33.9
Q ss_pred CCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 170 LDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+.++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 45689999988887765542111224577999999999999999998643
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=0.0067 Score=64.23 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=79.0
Q ss_pred CCCCCccccchhHHHHHHhhcc--C-------C-CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 168 GALDGLIGIESRVEKVESLLCI--G-------L-VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
...++++|.+....++.++... . + .-.+-+.|+|++|+||||||+.++..... ..+.+... .....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~~-~~~~~ 88 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGS-DFVEM 88 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHH-HHHHS
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEeeHH-HHHHH
Confidence 3446788887776666554321 0 0 00122889999999999999999987642 22233211 11000
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGWF 301 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 301 (1085)
. ....... ....++..-.....++++|+++... .+..+...+...
T Consensus 89 ~-~~~~~~~------------------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~ 149 (254)
T 1ixz_A 89 F-VGVGAAR------------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 149 (254)
T ss_dssp C-TTHHHHH------------------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC
T ss_pred H-hhHHHHH------------------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCC
Confidence 0 0000000 0011111112346789999984321 122232222111
Q ss_pred --CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 302 --GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 302 --~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
.....++.||........ .....+.++..+.++-.+++..++
T Consensus 150 ~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 150 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 122344456666554432 245678899999998888887665
No 238
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.09 E-value=0.00048 Score=66.35 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=26.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
-..++|+|+.|+|||||++.++......-...+|+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 35789999999999999999998765421114555
No 239
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.09 E-value=0.00038 Score=73.84 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=18.1
Q ss_pred ccCCCCCEEEccCCcccc--cccccccCCCCCcEEEeeCC
Q 044535 747 ECLTELTVLRLQKCKRLK--RVSSSICKLKSLEILYLFGC 784 (1085)
Q Consensus 747 ~~l~~L~~L~L~~~~~~~--~l~~~l~~l~~L~~L~L~~~ 784 (1085)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 345666666666665443 22333334444444444443
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.03 E-value=0.0068 Score=65.20 Aligned_cols=155 Identities=15% Similarity=0.192 Sum_probs=81.4
Q ss_pred ccCCCCCccccchhHHHHHHhhcc--C-------C-CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhh
Q 044535 166 SSGALDGLIGIESRVEKVESLLCI--G-------L-VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREES 235 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s 235 (1085)
+....++++|.+..++++.++... . + .-.+-+.|+|++|+||||||+.++..... ..+.+... ...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~~~-~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITASGS-DFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHH-HHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEecHH-HHH
Confidence 334456788988877777654321 0 0 00122889999999999999999987642 22333211 110
Q ss_pred hhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCCC
Q 044535 236 AKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDHG 299 (1085)
Q Consensus 236 ~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~ 299 (1085)
... ....... ....++..-...+.++|+|+++.. ..+..+...+.
T Consensus 111 ~~~-~~~~~~~------------------i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 111 EMF-VGVGAAR------------------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp HST-TTHHHHH------------------HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred HHH-hhHHHHH------------------HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 000 0000000 001111111235678999998421 11223332222
Q ss_pred CCC--CCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 300 WFG--LGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 300 ~~~--~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
... ....++.||....+... .....++++..+.++-.+++..++
T Consensus 172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 111 12344446665544321 245678899999998888887665
No 241
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.98 E-value=0.0046 Score=73.19 Aligned_cols=51 Identities=25% Similarity=0.431 Sum_probs=36.9
Q ss_pred CccccchhHHHHHHhhcc----CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 172 GLIGIESRVEKVESLLCI----GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+++|.+...+.+.+.+.. .......+.++|++|+||||||+.++......|
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 478888777776544321 112346899999999999999999999875443
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.92 E-value=0.0058 Score=70.88 Aligned_cols=151 Identities=15% Similarity=0.224 Sum_probs=84.1
Q ss_pred cCCCCCccccchhHHHHHHhhcc--CC--------CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhh
Q 044535 167 SGALDGLIGIESRVEKVESLLCI--GL--------VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESA 236 (1085)
Q Consensus 167 ~~~~~~~vGr~~~~~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~ 236 (1085)
....++++|.+..+.++.++... .. .-.+-|.|+|++|+||||||++++...... .+.+.. .....
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~g-~~~~~ 102 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASG-SDFVE 102 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEEG-GGGTS
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeh-hHHHH
Confidence 34457899999887777665421 10 011238899999999999999999876422 222321 11111
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhc----CCceEEEEeCCCCH----------------HHHHHHhc
Q 044535 237 KRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLR----RKTVLIVLDDVENS----------------QQLKNLAG 296 (1085)
Q Consensus 237 ~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVLDdv~~~----------------~~~~~l~~ 296 (1085)
.+ .......+...++ ..+.++++|+++.. ..+..+..
T Consensus 103 ~~-----------------------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 103 MF-----------------------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp SC-----------------------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred hh-----------------------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 00 0001111222222 23578999998431 11333333
Q ss_pred CCCCC--CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhc
Q 044535 297 DHGWF--GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAF 344 (1085)
Q Consensus 297 ~~~~~--~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~ 344 (1085)
.+..+ ..+..|+.||.....+.. ..+..+.++..+.++-.+++..++-
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 22211 223455556666554332 2346789999999999999987763
No 243
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.92 E-value=0.0037 Score=76.27 Aligned_cols=170 Identities=16% Similarity=0.236 Sum_probs=94.9
Q ss_pred CCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhh-hhh
Q 044535 170 LDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREE-SAK 237 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~-s~~ 237 (1085)
.+++.|.+..+++|.+++.. +-...+-|.++|++|+|||+||+++++....+| +..+.... +..
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk~ 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSSC
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhccc
Confidence 46688999999988876531 112356788999999999999999998764432 22221111 110
Q ss_pred hc-HHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCHH-------------HHHHHhcCCCCC--
Q 044535 238 RG-VHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENSQ-------------QLKNLAGDHGWF-- 301 (1085)
Q Consensus 238 ~~-~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-- 301 (1085)
.+ .... ....+....+..+.+|+||+++... ....+.......
T Consensus 279 ~gese~~---------------------lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 279 AGESESN---------------------LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp TTHHHHH---------------------HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred chHHHHH---------------------HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 00 0011 1112223334678999999985421 122222211111
Q ss_pred CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhhccCCCC-CCCHHHHHHHHHHHhcCCc
Q 044535 302 GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNAFKLNHP-TEDYMGLSNQVVHYAKGIP 368 (1085)
Q Consensus 302 ~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~glP 368 (1085)
..+-.||.||........ ..+..++++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 123334445554332221 345678999999999999998776332211 122 345666676653
No 244
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.91 E-value=0.0025 Score=69.55 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=36.7
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+.++|....+.++.+.+..-......|.|+|.+|+|||++|+++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999988887765322223457799999999999999999854
No 245
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.84 E-value=0.005 Score=66.73 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=25.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
..+.+.++|++|+|||+||+++++.....|
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 346788999999999999999999885443
No 246
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.83 E-value=0.0032 Score=78.21 Aligned_cols=148 Identities=20% Similarity=0.200 Sum_probs=81.1
Q ss_pred CCccccchhHHHHHHhhccCC-------CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIGL-------VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRL 243 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l 243 (1085)
..++|.+..++.+...+.... .....+.++|++|+|||++|+++++.....-...+.+. ...........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 468999998888877664211 12346889999999999999999997644323333332 22211111100
Q ss_pred HHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH--HHHHHHhcCCC-----C------CCCCCEEEEE
Q 044535 244 QEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS--QQLKNLAGDHG-----W------FGLGSRIIIT 310 (1085)
Q Consensus 244 ~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~--~~~~~l~~~~~-----~------~~~gs~IiiT 310 (1085)
.......++ +...-+|+||+++.. +....|...+. . .....+||+|
T Consensus 568 ------------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ------------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ------------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 001111111 233458999999653 22333322111 0 1135688888
Q ss_pred eCChh-------------hhh---cCCCeEEEeecCCHHHHHHHHHHh
Q 044535 311 SRDKQ-------------VLK---TGVDEMYEVEELNCREALQLFSLN 342 (1085)
Q Consensus 311 TR~~~-------------v~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 342 (1085)
|.... +.. ...+.++.+++++.++-.+++...
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 87210 111 133468889999988888777644
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.032 Score=59.58 Aligned_cols=124 Identities=15% Similarity=0.129 Sum_probs=66.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCC
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRK 276 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~k 276 (1085)
++|+|++|.||||||+.++...... .+++... ...... .....+. +.. .....-...
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~---~i~i~g~-~l~~~~-~~~~~~~-i~~-----------------vf~~a~~~~ 103 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLN---FISVKGP-ELLNMY-VGESERA-VRQ-----------------VFQRAKNSA 103 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCE---EEEEETT-TTCSST-THHHHHH-HHH-----------------HHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCC---EEEEEcH-HHHhhh-hhHHHHH-HHH-----------------HHHHHHhcC
Confidence 8999999999999999999875432 2333211 110000 0000000 000 011111235
Q ss_pred ceEEEEeCCCCHH-------------HHHHHhcCCCC--CCCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHH
Q 044535 277 TVLIVLDDVENSQ-------------QLKNLAGDHGW--FGLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREA 335 (1085)
Q Consensus 277 r~LlVLDdv~~~~-------------~~~~l~~~~~~--~~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea 335 (1085)
+.++++|+++... ....+...+.. .....-++.+|....+... ..+..+.++..+.++.
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 6788889886420 11222211111 1123445567766655432 3467788999999999
Q ss_pred HHHHHHhh
Q 044535 336 LQLFSLNA 343 (1085)
Q Consensus 336 ~~Lf~~~a 343 (1085)
.++|..+.
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998765
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.52 E-value=0.0081 Score=74.55 Aligned_cols=151 Identities=15% Similarity=0.234 Sum_probs=84.0
Q ss_pred CCCCccccchhHHHHHHhhcc-----------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhh
Q 044535 169 ALDGLIGIESRVEKVESLLCI-----------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAK 237 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~ 237 (1085)
..+.++|.+..+++|.+++.. .-.....|.|+|++|+||||||++++......| +.+. .......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhhh
Confidence 446799999999998887643 122345688999999999999999988764333 2221 1111000
Q ss_pred hcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhhcCCceEEEEeCCCCH----------------HHHHHHhcCCCCC
Q 044535 238 RGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRLRRKTVLIVLDDVENS----------------QQLKNLAGDHGWF 301 (1085)
Q Consensus 238 ~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVLDdv~~~----------------~~~~~l~~~~~~~ 301 (1085)
. ..... ......+.......+.++++|+++.. .++-.+......
T Consensus 278 ~-~g~~~------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~- 337 (806)
T 1ypw_A 278 L-AGESE------------------SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ- 337 (806)
T ss_dssp S-TTHHH------------------HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-
T ss_pred h-hhhHH------------------HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-
Confidence 0 00000 00111222223346789999998421 112222222221
Q ss_pred CCCCEEEEEeCChhhhhc------CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 302 GLGSRIIITSRDKQVLKT------GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 302 ~~gs~IiiTTR~~~v~~~------~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
..+..+|.||........ .....+.+...+.++..+++..++
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 234455556655432221 233567788888899888887665
No 249
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.21 E-value=0.0049 Score=69.63 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+.++|++|+|||++|+.+++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998774
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.21 E-value=0.0062 Score=62.79 Aligned_cols=33 Identities=18% Similarity=0.147 Sum_probs=25.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
-.+++|+|.+|+||||||..++. . .-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 35899999999999999999987 2 223456664
No 251
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.21 E-value=0.048 Score=58.97 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=32.3
Q ss_pred hhHHHHHHhhccC------CCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 178 SRVEKVESLLCIG------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 178 ~~~~~l~~~L~~~------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
.-.++|.+.+... .....+++|+|++|+||||++..++..++..
T Consensus 82 ~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 82 SLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp HHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 3445566666432 1346899999999999999999999877654
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.04 E-value=0.0076 Score=74.94 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCccccchhHHHHHHhhccC-------CCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 171 DGLIGIESRVEKVESLLCIG-------LVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45889998888877765421 12235788999999999999999998773
No 253
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.00 E-value=0.0096 Score=64.92 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=37.8
Q ss_pred CCCccccc----hhHHHHHHhhccCCC-ceEEEEEEecCCCcHHHHHHHHHHHHh-ccCcceEEE
Q 044535 170 LDGLIGIE----SRVEKVESLLCIGLV-DVHIVGIWGMGGIGKTTIARAIFDRIA-NQFEGCCFL 228 (1085)
Q Consensus 170 ~~~~vGr~----~~~~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~ 228 (1085)
.+.|++.. ..++.+.+++..... ....+.|+|++|+|||+||.++++... ..-..+.|+
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 45566533 233444555543221 246788999999999999999999776 543344555
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.92 E-value=0.023 Score=62.04 Aligned_cols=104 Identities=20% Similarity=0.138 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHh-cCCChhHHHHHHHHHHHHhhcccccccCCCCcHHHHHHHHHHHHhhcccccccCCCCCccccchhH
Q 044535 102 GSFGEALAKHEKY-SSKTKPKVLKWRAALTQVANLSGWHLDKQLGSEAELVEKIVKDVLKKLNHTSSGALDGLIGIESRV 180 (1085)
Q Consensus 102 g~~~~~~~~~~~~-~~~~~~~v~~w~~al~~~~~~~g~~~~~~~~~e~~~i~~i~~~i~~~l~~~~~~~~~~~vGr~~~~ 180 (1085)
..+...+.+.... -.-+.+.++.++++|-+. +. ..+.++++++.+.++........ . =++.-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----dv--------~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ 79 (320)
T 1zu4_A 16 FNFSKDIKKLSKKYKQADDEFFEELEDVLIQT----DM--------GMKMVLKVSNLVRKKTKRDTSFE--N--IKDALV 79 (320)
T ss_dssp HHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHT----TC--------CHHHHHHHHHHHHHHCCTTCCHH--H--HHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHc----CC--------CHHHHHHHHHHHHHHHhhchhHH--H--HHHHHH
Confidence 3445555544432 122344455666666532 11 23456667776665543221100 0 111222
Q ss_pred HHHHHhhccC------------CCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 181 EKVESLLCIG------------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 181 ~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
++|.+++... .....+++|+|.+|+||||++..++..+...
T Consensus 80 ~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 80 ESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp HHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3444444322 1346899999999999999999999877654
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.85 E-value=0.02 Score=63.20 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=35.6
Q ss_pred HHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 180 VEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 180 ~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
...|..+|. .+-..-.++.|+|++|+||||||..++......-..++|+.
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345666664 23234479999999999999999999987654434466774
No 256
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.72 E-value=0.016 Score=57.66 Aligned_cols=131 Identities=17% Similarity=0.101 Sum_probs=63.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCC-CCC---------CCCcc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGD-LSL---------GASGL 264 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~-~~~---------~~~~~ 264 (1085)
..|.|++-.|.||||.|-..+-+...+=-.+.++.-... ....+-..+.+.+--.+..... ... .....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-TWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-CCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 456677777799999999998876555444555532211 0112222222222000000000 000 00011
Q ss_pred chHHHHHhhcCCc-eEEEEeCCCC--------HHHHHHHhcCCCCCCCCCEEEEEeCChhhhhc-CCCeEEEeec
Q 044535 265 GHTFMNTRLRRKT-VLIVLDDVEN--------SQQLKNLAGDHGWFGLGSRIIITSRDKQVLKT-GVDEMYEVEE 329 (1085)
Q Consensus 265 ~~~~l~~~l~~kr-~LlVLDdv~~--------~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~~~-~~~~~~~l~~ 329 (1085)
.....++.+...+ =|||||++.. .+++-.+.... .....||||+|...-.-. ..+.+-++..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 2233445555444 4999999832 23333333332 357899999997632222 3455555544
No 257
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.63 E-value=0.0066 Score=65.31 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
-+++.|+|++|+||||||.+++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 356789999999999999999876
No 258
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.60 E-value=0.0068 Score=60.63 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=5.4
Q ss_pred CCCCCEEEccC
Q 044535 749 LTELTVLRLQK 759 (1085)
Q Consensus 749 l~~L~~L~L~~ 759 (1085)
-+.|+.|+|++
T Consensus 40 n~~L~~L~L~~ 50 (197)
T 1pgv_A 40 DTDLKEVNINN 50 (197)
T ss_dssp CSSCCEEECTT
T ss_pred CCCccEEECCC
Confidence 34455555544
No 259
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.56 E-value=0.011 Score=59.22 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=17.3
Q ss_pred CCCCCcEEEeeCCCCCC-----CcchhhcCCCCccEEEccCCCCc
Q 044535 772 KLKSLEILYLFGCSKLE-----GLPEILESMERLETLYLAGTPIK 811 (1085)
Q Consensus 772 ~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~L~~~~i~ 811 (1085)
+-++|+.|+|++|+.+. .+-+.+..-+.|+.|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34455555555432211 12233334444555555555544
No 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.52 E-value=0.035 Score=54.57 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.6
Q ss_pred EEEEEEecCCCcHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAI 214 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v 214 (1085)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 261
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.51 E-value=0.014 Score=60.70 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=26.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.+++|.|.+|+|||||++.++......-..+.|+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 5889999999999999999997554333345555
No 262
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.45 E-value=0.048 Score=58.85 Aligned_cols=35 Identities=20% Similarity=0.141 Sum_probs=27.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..+++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67899999999999999999998776543334444
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.44 E-value=0.046 Score=59.74 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=33.2
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
...|..++ .+-..-.++.|.|.+|+||||+|..++.....+-..++|+.
T Consensus 55 ~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 55 FTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp CHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred hHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 34444444 22233468889999999999999999876654435566663
No 264
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.10 E-value=0.036 Score=69.58 Aligned_cols=49 Identities=16% Similarity=0.286 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHhhccC-------CCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 172 GLIGIESRVEKVESLLCIG-------LVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.++|.+..++.+...+... ......+.|+|++|+|||++|+++++....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5789999888887766421 112357889999999999999999987643
No 265
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.08 E-value=0.03 Score=58.01 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.-.+++|+|+.|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998754
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.02 E-value=0.17 Score=57.17 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=27.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..++|+++|.+|+||||++..++..++..=..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998776543333333
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.95 E-value=0.011 Score=65.48 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=39.6
Q ss_pred CCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 170 LDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 170 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
.+.++|++..++.+...+..+ .-+.++|++|+|||+||+.+++.....|
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 356899999998888777643 3577999999999999999998775443
No 268
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.95 E-value=0.024 Score=57.77 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.5
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
....+|+|+|+.|.|||||++.+...+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999998765
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.94 E-value=0.16 Score=57.40 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=25.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+|.++|.+|+||||++.+++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999999877654
No 270
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.90 E-value=0.11 Score=59.03 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=25.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++|.++|.+|+||||+|..++..++..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999877665
No 271
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.88 E-value=0.079 Score=57.92 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=24.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+++|+|+.|+||||+++.++..++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999866543
No 272
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.76 E-value=0.04 Score=55.78 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=30.9
Q ss_pred chhHHHHHHhhcc-CCCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 177 ESRVEKVESLLCI-GLVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 177 ~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++.++++.+.+.. ......+|+|.|..|.||||+|+.+...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555544432 223457999999999999999999988664
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.73 E-value=0.013 Score=58.02 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|.|.|++|+||||+|+.+.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4788999999999999999998764
No 274
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.70 E-value=0.066 Score=56.07 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=28.4
Q ss_pred HHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 181 EKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 181 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.-+..++....+....+.++|++|.|||++|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34566665432334568999999999999999998853
No 275
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.69 E-value=0.013 Score=60.23 Aligned_cols=112 Identities=16% Similarity=0.055 Sum_probs=58.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcC-CCCCCCCCccchHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLED-GDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~-~~~~~~~~~~~~~~l~~~ 272 (1085)
-.++.|+|..|+||||+|..++++...+-..+.++..... .. +.. ++...+.-. .........+....+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d--~r-~~~----~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID--TR-SIR----NIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--GG-GCS----SCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC--ch-HHH----HHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 4688899999999999999999887665444444422111 11 111 111111100 001111111222233333
Q ss_pred hcCC-ceEEEEeCCCC--HHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 044535 273 LRRK-TVLIVLDDVEN--SQQLKNLAGDHGWFGLGSRIIITSRDKQ 315 (1085)
Q Consensus 273 l~~k-r~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 315 (1085)
+.+. .-+||+|.+.. .++++.+..... .|-.||+|.++.+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 3333 44999999853 344444432111 2678999998543
No 276
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.67 E-value=0.063 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+|.|.|++|+||||.|+.+++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47789999999999999999875
No 277
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.66 E-value=0.022 Score=69.58 Aligned_cols=149 Identities=15% Similarity=0.256 Sum_probs=76.6
Q ss_pred CCccccchhHHHHHHhhccC-----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhc
Q 044535 171 DGLIGIESRVEKVESLLCIG-----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRG 239 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~ 239 (1085)
..+.|.+...++|.+.+... ....+-|.++|++|.|||.+|+++++.....| +.....
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~------- 545 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGP------- 545 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHH-------
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccc-------
Confidence 56778888888887765321 12234577999999999999999998764332 111110
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCccch-HHHHHhhcCCceEEEEeCCCCHH----------------HHHHHhcCCCCCC
Q 044535 240 VHRLQEELFSRLLEDGDLSLGASGLGH-TFMNTRLRRKTVLIVLDDVENSQ----------------QLKNLAGDHGWFG 302 (1085)
Q Consensus 240 ~~~l~~~ll~~~~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~~ 302 (1085)
+++....+ ..+... ..+...-+..+.+|++|+++... .+..|+..+....
T Consensus 546 ------~l~s~~vG-------ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 546 ------ELLTMWFG-------ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ------HHHTTTCS-------SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ------hhhccccc-------hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 11111111 111111 22222234578999999985320 1233333222222
Q ss_pred C-CCEEEE-EeCChh-----hhhc-CCCeEEEeecCCHHHHHHHHHHhh
Q 044535 303 L-GSRIII-TSRDKQ-----VLKT-GVDEMYEVEELNCREALQLFSLNA 343 (1085)
Q Consensus 303 ~-gs~Iii-TTR~~~-----v~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 343 (1085)
. ...+|| ||-... +... ..+..+.++..+.++..++|..+.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 2 223444 443222 2222 346778888878888888887665
No 278
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.65 E-value=0.019 Score=64.38 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=33.9
Q ss_pred ccccchhHHHHHHhhc-------------cCCCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 173 LIGIESRVEKVESLLC-------------IGLVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++|.+..++.+...+. ........|.++|++|+|||++|+++++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5777777776666552 1111235688999999999999999998774
No 279
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.62 E-value=0.06 Score=59.84 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=36.1
Q ss_pred chhHHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 177 ESRVEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 177 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
..-...|..+|. .+-..-.++.|+|.+|+||||||..++......-..++|+..
T Consensus 56 ~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 56 STGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 333445555564 222233578889999999999999998766544445777753
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.55 E-value=0.018 Score=56.65 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998764
No 281
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.46 E-value=0.086 Score=57.01 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=27.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+++|+|++|+||||+++.++..+... .+.+++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l 135 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMF 135 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEE
Confidence 35699999999999999999999876543 334444
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.38 E-value=0.039 Score=59.34 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=25.4
Q ss_pred CCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 191 LVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 191 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345689999999999999999999886653
No 283
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.37 E-value=0.095 Score=59.92 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+++|+|..|+|||||++.++..+... .+.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 35799999999999999999999876543 344444
No 284
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.36 E-value=0.041 Score=58.20 Aligned_cols=111 Identities=12% Similarity=0.115 Sum_probs=61.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
-.+++|+|+.|.|||||++.+...+...+.+.+++....-........ .+......... .......+.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~--------~~v~q~~~gl~-~~~l~~~la~aL 95 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK--------SIVNQREVGED-TKSFADALRAAL 95 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS--------SEEEEEEBTTT-BSCHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc--------eeeeHHHhCCC-HHHHHHHHHHHH
Confidence 468999999999999999999886655444555443210000000000 00000000000 112345566777
Q ss_pred cCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhh
Q 044535 274 RRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQV 316 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v 316 (1085)
..++=++++|...+.+....+.... ..|.-|++||-+..+
T Consensus 96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 6677789999998766654443321 246678888876543
No 285
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.31 E-value=0.063 Score=49.93 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=24.0
Q ss_pred EEEccCCCCc--ccCccccCCCCCCEEEccCCCchhhhccCCchhhhcCCCCccEEecCCCC
Q 044535 802 TLYLAGTPIK--ELPSSIDHLPQLSLLSLENCKNILVFLTNLPLALLSGLCSLTELHLNDCN 861 (1085)
Q Consensus 802 ~L~L~~~~i~--~lp~~l~~l~~L~~L~L~~~~~l~~~l~~l~~~~~~~l~~L~~L~Ls~n~ 861 (1085)
.++.+++.++ .+|..+ .++|+.|+|++|. ++.++...|..+++|+.|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~-----l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNN-----LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSC-----CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCc-----CCccChhhhhhccccCEEEecCCC
Confidence 4455555555 555322 1234444444444 444444444444444444444443
No 286
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.29 E-value=0.024 Score=62.86 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=64.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceE-EEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHhh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCC-FLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTRL 273 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~l 273 (1085)
.+++|+|+.|.||||+.+.+...+.......+ .+.+..+...... . ......... .........+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-~--------~~v~q~~~~-~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-K--------CLVNQREVH-RDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-S--------SEEEEEEBT-TTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-c--------cceeeeeec-cccCCHHHHHHHHh
Confidence 48999999999999999999887655433333 3322111000000 0 000000000 01122345788888
Q ss_pred cCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChhhh
Q 044535 274 RRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQVL 317 (1085)
Q Consensus 274 ~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~v~ 317 (1085)
...+=+|++|.+.+.+.++.+.... ..|.-||+||-.....
T Consensus 194 ~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 8899999999999887766654432 2466788888866543
No 287
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.28 E-value=0.019 Score=57.18 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+.|.|+|++|+||||+|+.++.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999998763
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.26 E-value=0.023 Score=57.50 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|+|++|+||||+|+.++....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998773
No 289
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.24 E-value=0.18 Score=57.94 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=41.8
Q ss_pred ccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccC-cceEEEeehhhhhhhhcHHHHHHHHHHHHh
Q 044535 175 GIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF-EGCCFLENVREESAKRGVHRLQEELFSRLL 252 (1085)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F-~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~ 252 (1085)
|...-...|..++ .+-..-.++.|.|.+|+||||+|..++..+.... ..++|+.. .....++...++....
T Consensus 182 ~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 182 GVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCSEA 253 (444)
T ss_dssp -CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHHHT
T ss_pred cccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHHHc
Confidence 3333334444444 2323346888999999999999999998765432 34566532 2334455555554433
No 290
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.22 E-value=0.058 Score=50.20 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=26.3
Q ss_pred EEecCCCCCC--CCCcccCCCCCCCEEECCCCCCCcCC---CCCCCCCCEeeccccc
Q 044535 854 ELHLNDCNLL--ELPSALTCLSSLEILGLSGNIFESLN---LKPFSCLTHLNVSYCK 905 (1085)
Q Consensus 854 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~l~---~~~l~~L~~L~l~~c~ 905 (1085)
.++.+++.++ .+|..+. ++|+.|+|++|+|+.++ +..+++|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5554322 34556666666666555 3444555555555543
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.01 E-value=0.05 Score=54.45 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.+|.|.|++|+||||+|+.+++++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998764
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.99 E-value=0.017 Score=57.54 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=23.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
|.|.|+|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999877654443
No 293
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.97 E-value=0.039 Score=60.30 Aligned_cols=48 Identities=25% Similarity=0.202 Sum_probs=32.6
Q ss_pred ccchhHHHHHHhhcc--CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 175 GIESRVEKVESLLCI--GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 175 Gr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+.+...+++.+.+.. ..+....|.|+|++|.||||+|+.++..+...|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444444444431 233456789999999999999999998766544
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.87 E-value=0.028 Score=55.03 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=23.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...+|+|.|+.|+||||+|+.++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998764
No 295
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=93.82 E-value=0.29 Score=54.11 Aligned_cols=153 Identities=13% Similarity=0.008 Sum_probs=95.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh-ccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA-NQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
.++..++|..|.||++.|+.+...+. ..|+....+ ... ...++..+...+-. .-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~---------------------~p 72 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTF-SID---PNTDWNAIFSLCQA---------------------MS 72 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEE-ECC---TTCCHHHHHHHHHH---------------------HH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEE-Eec---CCCCHHHHHHHhcC---------------------cC
Confidence 46888999999999999999988654 345422111 111 12334443333211 11
Q ss_pred hcCCceEEEEeCCCC---HHHHHHHhcCCCCCCCCCEEEEEeCC-------hhhhhc--CCCeEEEeecCCHHHHHHHHH
Q 044535 273 LRRKTVLIVLDDVEN---SQQLKNLAGDHGWFGLGSRIIITSRD-------KQVLKT--GVDEMYEVEELNCREALQLFS 340 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gs~IiiTTR~-------~~v~~~--~~~~~~~l~~L~~~ea~~Lf~ 340 (1085)
+.+.+-++|+|+++. ....+.+...+....+++.+|++|.. ..+.+. .....++..+++.++..+.+.
T Consensus 73 lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred CccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 234567888899865 34455565544444568888877643 234333 456789999999999988887
Q ss_pred HhhccCCCCCCCHHHHHHHHHHHhcCCchHHHH
Q 044535 341 LNAFKLNHPTEDYMGLSNQVVHYAKGIPLALKV 373 (1085)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 373 (1085)
..+-..+. .-..+.+..+++.++|...++..
T Consensus 153 ~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 153 ARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 76533221 12235677888889998876654
No 296
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.82 E-value=0.029 Score=62.45 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=36.6
Q ss_pred ccCCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 166 SSGALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 166 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++...+.++|.+..++.+...+.... ..-+.|+|++|+|||++|+++++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34456779999886665444332211 22388999999999999999998654
No 297
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.81 E-value=0.15 Score=55.06 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l 133 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 133 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEE
Confidence 35799999999999999999999876543 334444
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.80 E-value=0.058 Score=54.50 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...+|+|.|+.|.||||+|+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999998775
No 299
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.76 E-value=0.062 Score=57.50 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=27.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccC--cceEEEee
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQF--EGCCFLEN 230 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F--~~~~~~~~ 230 (1085)
++-|+|++|+||||||..++......+ ..++|++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 689999999999999999987665543 35677753
No 300
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.72 E-value=0.085 Score=56.84 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=24.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...+++|+|.+|+||||++..++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999987753
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.64 E-value=0.037 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.60 E-value=0.043 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+|.|.|++|+||||+|+.+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 303
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.59 E-value=0.17 Score=55.86 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=27.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...+++|+|+.|+||||+++.++..+... .+.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l 190 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLM 190 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEE
Confidence 35799999999999999999999876543 334444
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.54 E-value=0.028 Score=55.31 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|+|+.|.||||+|+.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988753
No 305
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.54 E-value=0.038 Score=55.30 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
..+++|+|+.|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999864
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.51 E-value=0.21 Score=52.60 Aligned_cols=23 Identities=48% Similarity=0.472 Sum_probs=20.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 307
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.49 E-value=0.044 Score=63.58 Aligned_cols=44 Identities=25% Similarity=0.198 Sum_probs=36.7
Q ss_pred CCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 171 DGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 171 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+.++|.+..++.+...+..+ .-|.|+|++|+|||+||+++++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 35899999998888777544 357799999999999999998865
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.49 E-value=0.027 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.++|.|.|++|+||||+|+.+++++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.44 E-value=0.07 Score=53.14 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=24.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...+|.|.|++|+||||+|+.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3478999999999999999999987754
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.44 E-value=0.058 Score=52.52 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=24.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++++|.|..|+|||||+..+...+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35789999999999999999999877654
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.38 E-value=0.041 Score=58.01 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 312
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.37 E-value=0.064 Score=61.07 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=24.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++|+|+|.+|+||||+|..++...+.+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999866543
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.37 E-value=0.054 Score=56.72 Aligned_cols=26 Identities=19% Similarity=0.027 Sum_probs=23.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
....|+|.|++|+||||+|+.+.+++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.36 E-value=0.046 Score=54.63 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=23.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.+|.|.|++|+||||+|+.++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997764
No 315
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.30 E-value=0.039 Score=54.40 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 316
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.30 E-value=0.13 Score=56.72 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc------cCcceEEEe
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN------QFEGCCFLE 229 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 229 (1085)
.|..+|..+-..-.++.|+|.+|+||||||..++..... .-..++|+.
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344555433344578999999999999999999876432 123566774
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.27 E-value=0.039 Score=55.82 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|+|.|+.|+||||+|+.+++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998765
No 318
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.26 E-value=0.037 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+|+|.|+.|+||||+|+.++..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 319
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.20 E-value=0.04 Score=54.68 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++++|+|+.|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988654
No 320
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.20 E-value=0.13 Score=56.82 Aligned_cols=51 Identities=22% Similarity=0.228 Sum_probs=35.1
Q ss_pred hHHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 179 RVEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 179 ~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
-...|..+|. .+-..-+++.|+|.+|+||||||..++......=..++|+.
T Consensus 45 G~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 45 GSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3445555554 23233468999999999999999999876654434566764
No 321
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.13 E-value=0.055 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+++|+|+.|.||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 322
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.12 E-value=0.081 Score=57.50 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.2
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
++.+||+|.|-|||||||.|..++--+...=..+.-+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4679999999999999999999887665543334434
No 323
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.10 E-value=0.035 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+|+|.|++|+||||+|+.++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998764
No 324
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.90 E-value=0.038 Score=55.17 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=23.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 325
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.89 E-value=0.057 Score=54.57 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+|+|.|+.|.||||+|+.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999876
No 326
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.86 E-value=0.15 Score=57.06 Aligned_cols=109 Identities=13% Similarity=0.149 Sum_probs=61.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceE-EEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCCCCCccchHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCC-FLENVREESAKRGVHRLQEELFSRLLEDGDLSLGASGLGHTFMNTR 272 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~-~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~~~~~~~~~~l~~~ 272 (1085)
-.+++|+|+.|.||||+++.+...+.......+ ++....+ .... ..+ ....+..... +.......++..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e----~~~~---~~~--~~v~Q~~~g~-~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE----YVFK---HKK--SIVNQREVGE-DTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC----SCCC---CSS--SEEEEEEBTT-TBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh----hhhc---cCc--eEEEeeecCC-CHHHHHHHHHHH
Confidence 468999999999999999999987655433444 3321100 0000 000 0000000000 112334567778
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCCEEEEEeCChh
Q 044535 273 LRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGSRIIITSRDKQ 315 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~ 315 (1085)
++..+=+|++|.+.+.+.+....... ..|..|+.|+-...
T Consensus 206 L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 87778899999998777655443322 24666777766543
No 327
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=92.86 E-value=0.17 Score=55.53 Aligned_cols=29 Identities=24% Similarity=0.075 Sum_probs=24.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
-..++|+|.+|+|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 35789999999999999999998765543
No 328
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.85 E-value=0.13 Score=58.33 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=24.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccCcce
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQFEGC 225 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~ 225 (1085)
.++|+|.+|+||||||..+......++..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 588999999999999999998766555433
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.83 E-value=0.057 Score=52.68 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 330
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.80 E-value=0.14 Score=56.53 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=36.5
Q ss_pred chhHHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEee
Q 044535 177 ESRVEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLEN 230 (1085)
Q Consensus 177 ~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~ 230 (1085)
..-...|..+|. .+-..-+++.|.|.+|+||||||..++......-..++|+..
T Consensus 45 ~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 45 STGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 333445555554 222234689999999999999999998866544445777753
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.79 E-value=0.059 Score=53.61 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...|+|.|+.|+||||+|+.++++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 332
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.78 E-value=0.16 Score=55.60 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=40.6
Q ss_pred ccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHH
Q 044535 175 GIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSR 250 (1085)
Q Consensus 175 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~ 250 (1085)
|...-...|..++. +-..-.++.|.|.+|+||||+|..++.....+=..++|+. -.-...++...++..
T Consensus 28 gi~TG~~~LD~~~g-Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS-GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSD 96 (338)
T ss_dssp SBCCSCHHHHHHHC-SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHH
Confidence 33333344444442 2222357889999999999999999887654333455553 223344555555444
No 333
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.77 E-value=0.68 Score=49.35 Aligned_cols=36 Identities=14% Similarity=0.100 Sum_probs=26.6
Q ss_pred ccHHHHHhhccccEEEEEeccCccCchhhHHHHHHHH
Q 044535 37 VSPALLKAIEDSNISIVILSKDYASSSWCLDELLKIL 73 (1085)
Q Consensus 37 i~~~l~~ai~~s~~~ivv~S~~y~~s~wcl~El~~i~ 73 (1085)
...++.+.++++.+.|.|+.-.-..+..+ .++.+++
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~-~~l~~~l 48 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRN-PMIEDIL 48 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSC-HHHHHHC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCC-HHHHHHH
Confidence 34588999999999999998766666665 3455555
No 334
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.77 E-value=0.065 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=22.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+|+|.|++|+||||+|+.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998865
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.76 E-value=0.039 Score=56.23 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..+++|+|+.|+|||||++.+......
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999876543
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.73 E-value=0.092 Score=53.40 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=24.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
.+|+|.|+.|+||||+|+.+++++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5789999999999999999999876543
No 337
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.72 E-value=0.056 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..+|+|.|+.|+||||+|+.++++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 338
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.71 E-value=0.059 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|.|++|+||||+|+.+++++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 339
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.70 E-value=0.069 Score=53.31 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=30.8
Q ss_pred hhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 178 SRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.-+..+..++.. -+....+.|+|++|+||||+|.++++.+..
T Consensus 43 ~f~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 445666666653 222346899999999999999999987643
No 340
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.68 E-value=0.45 Score=54.38 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...|..++. +-..-.++.|.|.+|+||||+|..++.....+=..++|+
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 334444442 222346788999999999999999998765543345565
No 341
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.68 E-value=0.093 Score=53.53 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=24.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
..+|+|.|+.|+||||+|+.+.+++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999876543
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.65 E-value=0.071 Score=53.92 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+|+|.|+.|+||||+|+.++++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998764
No 343
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.64 E-value=0.063 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|.|+.|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 344
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.63 E-value=0.049 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=22.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|.|+.|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.60 E-value=0.043 Score=54.46 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=18.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|.|.|+.|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987654
No 346
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.59 E-value=0.064 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
...|+|+|+.|+||||+|+.++++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999886
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.51 E-value=0.077 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|.|+.|+||||+|+.++++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988763
No 348
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.50 E-value=0.066 Score=54.12 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|.|++|+||||+|+.++.++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 349
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.48 E-value=0.068 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|+|+.|.||||+|+.++..+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 350
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.44 E-value=0.075 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=23.0
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
....+|+|.|+.|.||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34678999999999999999999875
No 351
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.42 E-value=0.068 Score=56.27 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=24.0
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
....+|+|.|+.|.||||+|+.+...+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3467899999999999999999988654
No 352
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.41 E-value=0.082 Score=53.91 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=24.3
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999875
No 353
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.40 E-value=0.052 Score=55.07 Aligned_cols=26 Identities=19% Similarity=0.476 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.++|+|+|++|+||||+++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46789999999999999999988763
No 354
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.35 E-value=0.069 Score=54.05 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.9
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
+|+|.|+.|+||||+|+.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 355
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.34 E-value=0.051 Score=54.45 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=23.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987654
No 356
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.31 E-value=0.082 Score=53.84 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=24.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..+|+|.|+.|+||||+|+.+.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 357
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.30 E-value=0.087 Score=59.73 Aligned_cols=51 Identities=27% Similarity=0.276 Sum_probs=34.2
Q ss_pred CccccchhHHHHHHhhcc------------CCCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 172 GLIGIESRVEKVESLLCI------------GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 172 ~~vGr~~~~~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+++|.+..++.+...+.. .....+-+.++|++|+||||+|+.++......|
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 466666666665444311 011235588999999999999999998775443
No 358
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.28 E-value=0.083 Score=55.90 Aligned_cols=26 Identities=19% Similarity=0.524 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 359
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.27 E-value=0.089 Score=53.57 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...+|+|.|+.|.|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988764
No 360
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.26 E-value=0.069 Score=54.04 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+++|+|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998764
No 361
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.25 E-value=0.18 Score=59.34 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 183 VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+..+|..+-..-.+++|.|..|+|||||++.++.....
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 44444322223468999999999999999999976554
No 362
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.23 E-value=0.19 Score=55.89 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=29.5
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
++...+........+|+|+|.+|+|||||+..+.......
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3333343334467899999999999999999998766543
No 363
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.21 E-value=0.83 Score=52.48 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCc-ceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFE-GCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~ 228 (1085)
-.++.|.|.+|+||||||..++..+..... .++|+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~ 238 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIF 238 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 358899999999999999999987654322 45665
No 364
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.21 E-value=0.061 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998763
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.17 E-value=0.08 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=22.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987743
No 366
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.14 E-value=0.087 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.++|+|+.|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998664
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.12 E-value=0.11 Score=56.39 Aligned_cols=46 Identities=17% Similarity=0.195 Sum_probs=31.6
Q ss_pred cccchhHHHHHHhhccC--CCceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 174 IGIESRVEKVESLLCIG--LVDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 174 vGr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+|-...+..+...+... .....+|||.|..|.||||+|+.+...+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444444444333222 34567999999999999999999987665
No 368
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.95 E-value=0.079 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+++|+|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.94 E-value=0.097 Score=53.14 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
...+|+|+|++|.||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998764
No 370
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.94 E-value=0.46 Score=53.61 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=25.3
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877655
No 371
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.93 E-value=0.086 Score=55.26 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|+|+.|+|||||++.+++++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 372
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.90 E-value=0.095 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.-.+|+|.|+.|.||||+|+.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 373
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.87 E-value=0.07 Score=52.38 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.8
Q ss_pred eEEEEEEecCCCcHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAI 214 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v 214 (1085)
-.+++|+|+.|.|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999964
No 374
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.79 E-value=0.15 Score=58.88 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=24.6
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...++|+|+|.+|+||||++.+++..++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 346799999999999999999999877654
No 375
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.79 E-value=0.086 Score=53.45 Aligned_cols=22 Identities=55% Similarity=0.581 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 376
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.67 E-value=0.097 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 377
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.52 E-value=0.079 Score=55.48 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|+|+.|.||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998764
No 378
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.49 E-value=0.084 Score=55.54 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=23.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998763
No 379
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.47 E-value=0.078 Score=54.07 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987753
No 380
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.47 E-value=0.11 Score=52.20 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.|+|.|+.|+||||+|+.+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987744
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.45 E-value=0.11 Score=55.83 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999998765
No 382
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.41 E-value=0.083 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999987653
No 383
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.40 E-value=0.084 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998865
No 384
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.28 E-value=0.16 Score=53.03 Aligned_cols=36 Identities=19% Similarity=0.152 Sum_probs=27.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358899999999999999998876544434566663
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.27 E-value=0.13 Score=50.80 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
..+|+|.|+.|.||||+|+.+...+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999987643
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.22 E-value=0.13 Score=52.40 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=23.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..+|.|.|+.|.||||+|+.++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998765
No 387
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.19 E-value=0.1 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.17 E-value=0.097 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..|.|.|++|+||||+|+.+++++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999998764
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.17 E-value=0.11 Score=56.56 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 390
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.11 E-value=0.12 Score=52.47 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+|+|.|+.|+||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999998764
No 391
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.08 E-value=0.15 Score=55.85 Aligned_cols=101 Identities=22% Similarity=0.185 Sum_probs=57.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEeehhhhhhhhcHHHHHHHHHHHHhcCCCCCC--CCCccchHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLENVREESAKRGVHRLQEELFSRLLEDGDLSL--GASGLGHTFMNTR 272 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~~~~~~s~~~~~~~l~~~ll~~~~~~~~~~~--~~~~~~~~~l~~~ 272 (1085)
.+++|+|+.|.|||||++.+...+.. -.+.+.+....+.... .. ...... ..-......+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~-~~-------------~~~i~~~~ggg~~~r~~la~a 236 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFK-HH-------------KNYTQLFFGGNITSADCLKSC 236 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCS-SC-------------SSEEEEECBTTBCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccc-cc-------------hhEEEEEeCCChhHHHHHHHH
Confidence 47999999999999999998875533 3455655433211000 00 000000 0111223456777
Q ss_pred hcCCceEEEEeCCCCHHHHHHHhcCCCCCCCCC-EEEEEeCCh
Q 044535 273 LRRKTVLIVLDDVENSQQLKNLAGDHGWFGLGS-RIIITSRDK 314 (1085)
Q Consensus 273 l~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs-~IiiTTR~~ 314 (1085)
+..++=++++|.+...+.++.+... . .|. -+|+||-..
T Consensus 237 L~~~p~ilildE~~~~e~~~~l~~~-~---~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 237 LRMRPDRIILGELRSSEAYDFYNVL-C---SGHKGTLTTLHAG 275 (330)
T ss_dssp TTSCCSEEEECCCCSTHHHHHHHHH-H---TTCCCEEEEEECS
T ss_pred hhhCCCEEEEcCCChHHHHHHHHHH-h---cCCCEEEEEEccc
Confidence 8888889999999876555544332 1 232 256666543
No 392
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.07 E-value=0.14 Score=55.67 Aligned_cols=29 Identities=31% Similarity=0.412 Sum_probs=24.9
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
....+|+|.|..|.|||||++.+...+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34679999999999999999999886653
No 393
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.99 E-value=0.1 Score=62.56 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=40.5
Q ss_pred CCCCCccccchhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 168 GALDGLIGIESRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 168 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+.++|.+..++.+...+..+ ..+.|+|++|+||||||+.++......
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 34467999998888888877644 478999999999999999999865443
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.95 E-value=0.12 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|+|.|++|.||||+|+.++.++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998763
No 395
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.91 E-value=0.87 Score=52.44 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=23.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
.+.|.|.+|.||||++.++...+...-.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 7889999999999999999987655433
No 396
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.91 E-value=0.19 Score=51.36 Aligned_cols=42 Identities=31% Similarity=0.325 Sum_probs=30.3
Q ss_pred hhHHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 178 SRVEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 178 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+.+...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 16 ~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 344444444432 256899999999999999999998876544
No 397
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.88 E-value=0.14 Score=53.54 Aligned_cols=26 Identities=23% Similarity=0.476 Sum_probs=23.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+|+|.|+.|.||||||+.+...+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998865
No 398
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.85 E-value=0.31 Score=50.02 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=24.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+|+|+|.+|+|||||+..+.......
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 46889999999999999999998765443
No 399
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.78 E-value=0.14 Score=54.86 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999983
No 400
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.78 E-value=0.12 Score=52.57 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+++|+|+.|.|||||++.+....
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999998765
No 401
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.75 E-value=0.17 Score=52.55 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhc------cCcceEEEe
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIAN------QFEGCCFLE 229 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~F~~~~~~~ 229 (1085)
.|..+|..+-..-.+++|+|++|+||||||+.++..... .-..++|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 344444322223368999999999999999999875322 124566764
No 402
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.69 E-value=0.14 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999876
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.62 E-value=0.11 Score=56.21 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++|.|+|+.|+||||||+.++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5889999999999999999998653
No 404
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.55 E-value=0.15 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|+|.|++|+||||+|+.+++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 405
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.55 E-value=0.14 Score=49.27 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=23.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.-.+++|.|+.|.|||||++.++...
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999999866
No 406
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.55 E-value=0.11 Score=54.57 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=23.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...+|.|.|++|.||||+|+.+..+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999988754
No 407
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.45 E-value=0.23 Score=48.65 Aligned_cols=27 Identities=19% Similarity=0.428 Sum_probs=23.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 408
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.45 E-value=0.39 Score=64.06 Aligned_cols=37 Identities=27% Similarity=0.455 Sum_probs=29.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
.-+.+.|+|.+|.||||||.++......+=..+.|+.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit 1116 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1116 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3468899999999999999999886665555567773
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.44 E-value=0.14 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
..|.|.|+.|+||||+|+.+++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999999999999999998764
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.39 E-value=0.36 Score=52.03 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=26.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc-ceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE-GCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~-~~~~~ 228 (1085)
.+++|.|.+|+|||||++.++..+...-. .+.|+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999999987654433 34455
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.38 E-value=0.15 Score=52.38 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 412
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.37 E-value=0.14 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHHHh
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999988654
No 413
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.34 E-value=0.089 Score=57.13 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998765
No 414
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.33 E-value=0.2 Score=52.44 Aligned_cols=35 Identities=31% Similarity=0.212 Sum_probs=25.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh-ccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA-NQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~F~~~~~~ 228 (1085)
-.+++|+|+.|+|||||++.++.... ..-..++++
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 36899999999999999999985322 223344554
No 415
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.30 E-value=0.11 Score=50.94 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.+++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886654
No 416
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.30 E-value=0.11 Score=53.15 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=22.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
-.+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998755
No 417
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.29 E-value=0.14 Score=51.58 Aligned_cols=24 Identities=29% Similarity=0.399 Sum_probs=21.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
..|+|.|+.|+||||+|+.+.+++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999998866
No 418
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.05 E-value=0.17 Score=51.86 Aligned_cols=23 Identities=43% Similarity=0.462 Sum_probs=20.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
..+|+|.|+.|.||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 419
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.04 E-value=0.14 Score=54.79 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
++|+|.|+.|+||||||..++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 688999999999999999998764
No 420
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=90.03 E-value=0.54 Score=53.21 Aligned_cols=52 Identities=25% Similarity=0.415 Sum_probs=33.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc-CcceEEEeehhhhhhhhcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ-FEGCCFLENVREESAKRGVHRLQEELFS 249 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-F~~~~~~~~~~~~s~~~~~~~l~~~ll~ 249 (1085)
+.++|.|.+|+|||+|+..+.+.+... -+.++|+ .+++ .......+.+++..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-GVGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-EESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-ECCC--cchHHHHHHHHhhh
Confidence 578999999999999999999876443 2444554 2222 22344455555543
No 421
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.96 E-value=0.28 Score=49.89 Aligned_cols=27 Identities=22% Similarity=0.052 Sum_probs=22.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347789999999999999998876544
No 422
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.94 E-value=0.27 Score=53.38 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=27.9
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
...++|+|+|-||+||||+|..++..+...=..++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568898899999999999999998776543334444
No 423
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.93 E-value=0.11 Score=55.96 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.5
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 424
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.91 E-value=0.15 Score=52.12 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999988654
No 425
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.88 E-value=0.3 Score=51.69 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=26.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
++|+|.|-||+||||+|..++..+...=..+..+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 5788899999999999999998776543334444
No 426
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.76 E-value=0.86 Score=49.12 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=24.3
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHH
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
++++...+.. .+++|+|+.|+|||||.+.+..
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhcc
Confidence 4455555531 4789999999999999998875
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.66 E-value=0.3 Score=51.48 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999998766
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.64 E-value=0.18 Score=53.93 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.++|.|.|+.|+||||||..++.++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4789999999999999999999874
No 429
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=89.60 E-value=0.46 Score=54.06 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=34.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc-cCcceEEEeehhhhhhhhcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN-QFEGCCFLENVREESAKRGVHRLQEELFS 249 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~-~F~~~~~~~~~~~~s~~~~~~~l~~~ll~ 249 (1085)
+.++|.|.+|+|||+|+..+.+.+.. +-+.++|+ .+++ .......+.+++..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~-~iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE-EESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE-Eccc--CcHHHHHHHHhhhc
Confidence 56899999999999999999998654 33455555 3322 22334455555543
No 430
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.54 E-value=0.74 Score=54.48 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=23.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
+++.|.|.+|.||||++..+...+...-
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g 232 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLG 232 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 5788999999999999999988665443
No 431
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.51 E-value=0.59 Score=49.23 Aligned_cols=29 Identities=3% Similarity=-0.038 Sum_probs=22.9
Q ss_pred ccHHHHHhhccccEEEEEeccCccCchhh
Q 044535 37 VSPALLKAIEDSNISIVILSKDYASSSWC 65 (1085)
Q Consensus 37 i~~~l~~ai~~s~~~ivv~S~~y~~s~wc 65 (1085)
...++.+.++.+.+.|.|+.-.-..+..+
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~ 39 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSA 39 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSC
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcC
Confidence 34588999999999999998765555554
No 432
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.38 E-value=0.33 Score=52.09 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=24.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
.++|+|.|-||+||||+|..++..+...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 3678889999999999999999877654
No 433
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.37 E-value=0.23 Score=53.96 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=24.4
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
....+|+|.|+.|.|||||++.+...+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988765
No 434
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=89.23 E-value=0.33 Score=52.21 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=25.0
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
...+++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999877654
No 435
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.14 E-value=0.25 Score=54.97 Aligned_cols=27 Identities=26% Similarity=0.143 Sum_probs=23.4
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
....+++|+|+.|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445689999999999999999999754
No 436
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.02 E-value=0.14 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=16.0
Q ss_pred EEEEEEecCCCcHHHHHHHHH-HHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIF-DRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~-~~~ 218 (1085)
.+++|+|+.|+|||||++.+. ...
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999998 654
No 437
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.84 E-value=0.18 Score=51.09 Aligned_cols=23 Identities=39% Similarity=0.244 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998864
No 438
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.81 E-value=1 Score=48.45 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHHHHhhccCCCceEEEEEEecCCCcHHHHHHHHH
Q 044535 180 VEKVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIF 215 (1085)
Q Consensus 180 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~ 215 (1085)
++++.+.+. -.+++|.|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 455555553 1478999999999999999988
No 439
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.79 E-value=0.55 Score=51.69 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=25.3
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
....+|+|+|.+|+|||||+..+.......
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 456899999999999999999998766543
No 440
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.71 E-value=0.26 Score=54.76 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998764
No 441
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.61 E-value=0.23 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+|.|.|++|+||||+|+.+.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.61 E-value=0.19 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+.|.|.|+.|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998754
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.55 E-value=0.21 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.2
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
...+|+|.|+.|.||||+++.++.++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998866
No 444
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.52 E-value=0.4 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.+++|+|.+|+||||||..++..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 58999999999999999999875543
No 445
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.44 E-value=0.2 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 446
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.40 E-value=0.23 Score=51.66 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999875
No 447
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.38 E-value=0.41 Score=47.38 Aligned_cols=26 Identities=23% Similarity=0.036 Sum_probs=21.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
.++.|+|+.|+||||+|..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47789999999999999877776543
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.21 E-value=0.31 Score=48.60 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3567899999999999999998863
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.16 E-value=0.3 Score=50.40 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.7
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
....|+|.|+.|+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468899999999999999999998765
No 450
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.15 E-value=0.21 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998874
No 451
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=87.73 E-value=3.6 Score=46.84 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
+...|+|+|.+|+|||||...+...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998753
No 452
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.58 E-value=0.25 Score=61.27 Aligned_cols=54 Identities=24% Similarity=0.361 Sum_probs=41.1
Q ss_pred CCCCccccchhHHHHHHhhccC-----------CCceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 169 ALDGLIGIESRVEKVESLLCIG-----------LVDVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 169 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
...+++|.+...+.+.+.+... -.....+.++|++|+||||||++++......|
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3467889999989888876421 01235688999999999999999999875544
No 453
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.57 E-value=0.32 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
+.|+|+|.+|+|||||+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999875
No 454
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.55 E-value=0.39 Score=55.52 Aligned_cols=28 Identities=4% Similarity=0.043 Sum_probs=24.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
...+|.+.|+.|.||||+|++++.++..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3478999999999999999999998864
No 455
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.52 E-value=0.24 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|+.|.|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999753
No 456
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.49 E-value=0.53 Score=62.04 Aligned_cols=48 Identities=27% Similarity=0.432 Sum_probs=36.2
Q ss_pred HHHHhhcc-CCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 182 KVESLLCI-GLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 182 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
.|..+|-. +-+.-++|-|+|+.|+||||||.++.......=..++|+.
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~ 1466 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1466 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34455542 2234479999999999999999999987777767778884
No 457
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.47 E-value=0.41 Score=52.30 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHHhcc------CcceEEEe
Q 044535 182 KVESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQ------FEGCCFLE 229 (1085)
Q Consensus 182 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------F~~~~~~~ 229 (1085)
.+..+|..+-..-.++.|+|.+|+||||||..++...... -..++|+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3444443222233689999999999999999998765322 23566764
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.42 E-value=0.24 Score=52.60 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||++.++.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999863
No 459
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.41 E-value=0.28 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=20.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999876
No 460
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.40 E-value=0.35 Score=53.41 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=27.2
Q ss_pred HHHhhccCCCceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 183 VESLLCIGLVDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 183 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
+..+|..+-..-.++.|+|+.|+|||||++.++...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334443332345899999999999999999998765
No 461
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.28 E-value=0.68 Score=50.81 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=24.6
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
....+++|+|++|+|||||.+.+......
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 45689999999999999999999876543
No 462
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.24 E-value=0.32 Score=49.03 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=23.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
.+|.|.|+.|.||||+|+.+++++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999874
No 463
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.24 E-value=0.25 Score=52.15 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 464
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.20 E-value=0.37 Score=46.61 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.17 E-value=0.37 Score=50.12 Aligned_cols=26 Identities=19% Similarity=0.242 Sum_probs=22.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHh
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIA 219 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 219 (1085)
...|+|.|..|+||||+|+.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 36789999999999999999998764
No 466
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.14 E-value=0.29 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998863
No 467
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.08 E-value=0.26 Score=52.13 Aligned_cols=33 Identities=33% Similarity=0.581 Sum_probs=24.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.+++|+|+.|.|||||++.++.-.. ...+.+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLS-PSHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSC-CSSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC-CCCcEEEE
Confidence 5899999999999999999875332 22344444
No 468
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.03 E-value=0.34 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+||.|++|+||||+|+.+++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998876
No 469
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.01 E-value=0.26 Score=51.22 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 470
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.92 E-value=0.23 Score=50.57 Aligned_cols=22 Identities=41% Similarity=0.673 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 471
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=86.90 E-value=0.27 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||++.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5899999999999999999874
No 472
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.85 E-value=0.38 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998863
No 473
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.84 E-value=0.27 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999874
No 474
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.79 E-value=0.51 Score=47.45 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=25.7
Q ss_pred EEEEEE-ecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIW-GMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~-G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
++|+|+ +-||+||||+|..++..+...-..+..+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 577777 7899999999999998776643344444
No 475
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.75 E-value=0.55 Score=54.83 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=25.4
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHHhccC
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRIANQF 222 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F 222 (1085)
...+|.++|++|.||||+|++++..+...|
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 346899999999999999999998775444
No 476
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.74 E-value=0.3 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.320 Sum_probs=20.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHH
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
-.+++|+|+.|.|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999874
No 477
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.72 E-value=0.28 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|+.|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.70 E-value=1 Score=59.30 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 173 LIGIESRVEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
..+...-..+|..+|. .+-..-.++.|.|.+|+||||||..++......-..++|+
T Consensus 710 ~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 710 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 3344444556666664 2223346889999999999999999998766543356666
No 479
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.69 E-value=0.34 Score=52.10 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=22.9
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 480
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.68 E-value=0.14 Score=57.69 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=22.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIAN 220 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 220 (1085)
+.++|.|.+|+|||+|+..+++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 45789999999999999999887654
No 481
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.65 E-value=0.28 Score=51.22 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999864
No 482
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.64 E-value=0.43 Score=49.71 Aligned_cols=35 Identities=29% Similarity=0.225 Sum_probs=25.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHH-HhccCcceEEE
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDR-IANQFEGCCFL 228 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~-~~~~F~~~~~~ 228 (1085)
-.++.|.|.+|+||||+|..++.. ....-..++|+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~ 65 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceee
Confidence 358889999999999999997654 33333445555
No 483
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.57 E-value=0.29 Score=51.42 Aligned_cols=22 Identities=45% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.35 E-value=0.23 Score=56.39 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.1
Q ss_pred CceEEEEEEecCCCcHHHHHHHHHHHH
Q 044535 192 VDVHIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 192 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
....+|.|+|++|.||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999988654
No 485
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.33 E-value=0.52 Score=55.26 Aligned_cols=28 Identities=36% Similarity=0.481 Sum_probs=24.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 194 VHIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 194 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
-.+++|+|+.|.|||||++.++..+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 4789999999999999999999987643
No 486
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.32 E-value=0.3 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDR 217 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~ 217 (1085)
.+++|+|+.|.|||||++.++.-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998753
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=86.23 E-value=1.9 Score=49.22 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCCcHHHHHHHHHH
Q 044535 193 DVHIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 193 ~~~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
+...|+|+|.+|+|||||...+..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHT
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhC
Confidence 457788999999999999998875
No 488
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.17 E-value=0.31 Score=50.91 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=25.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
.+++|+|+.|.|||||.+.++.-+... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 579999999999999999988655443 55555
No 489
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.12 E-value=0.31 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999874
No 490
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.01 E-value=0.3 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+|+|.|+.|.||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998765
No 491
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=85.97 E-value=0.74 Score=47.76 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.0
Q ss_pred ceEEEEEE-ecCCCcHHHHHHHHHHHHhcc
Q 044535 193 DVHIVGIW-GMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 193 ~~~vv~I~-G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..++|+|+ +-||+||||+|..++..+...
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~ 32 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQE 32 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhC
Confidence 35778777 569999999999999988765
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.96 E-value=0.66 Score=46.78 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=25.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhccCc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQFE 223 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~F~ 223 (1085)
..|+|-|.-|+||||+++.+++++...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998876555
No 493
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.95 E-value=1.5 Score=58.53 Aligned_cols=57 Identities=25% Similarity=0.336 Sum_probs=40.1
Q ss_pred ccccchhHHHHHHhhc-cCCCceEEEEEEecCCCcHHHHHHHHHHHHhccCcceEEEe
Q 044535 173 LIGIESRVEKVESLLC-IGLVDVHIVGIWGMGGIGKTTIARAIFDRIANQFEGCCFLE 229 (1085)
Q Consensus 173 ~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~~ 229 (1085)
..+...-...|..+|. .+-..-+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455555566666664 22233468999999999999999999987765544567774
No 494
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=85.92 E-value=0.74 Score=46.72 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=24.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHHhcc
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRIANQ 221 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 221 (1085)
..|.|-|+.|+||||+++.+++.+...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999987654
No 495
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.91 E-value=0.32 Score=51.43 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999874
No 496
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.89 E-value=0.32 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFDRI 218 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~~~ 218 (1085)
.+++|+|+.|.|||||.+.++.-.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 589999999999999999987543
No 497
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.88 E-value=0.32 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHH
Q 044535 195 HIVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 195 ~vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.+++|+|+.|.|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999875
No 498
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=85.88 E-value=0.34 Score=47.84 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 499
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.87 E-value=0.41 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.580 Sum_probs=19.1
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 044535 196 IVGIWGMGGIGKTTIARAIFD 216 (1085)
Q Consensus 196 vv~I~G~gGiGKTtLA~~v~~ 216 (1085)
.|+++|.+|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999876
No 500
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.81 E-value=0.56 Score=48.85 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=24.5
Q ss_pred EEEEecCCCcHHHHHHHHHHHHhccCcceEEE
Q 044535 197 VGIWGMGGIGKTTIARAIFDRIANQFEGCCFL 228 (1085)
Q Consensus 197 v~I~G~gGiGKTtLA~~v~~~~~~~F~~~~~~ 228 (1085)
|+|.|-||+||||+|..++..+...=..+..+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999998876553334433
Done!