BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044538
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+ F YP ++++++ + + +A++GPN GKS L N+L
Sbjct: 677 MEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 12/62 (19%)
Query: 108 IANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDS 155
I LSGGQKV+++ + +LD S+ A++ L EF GGV++++H +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 156 RL 157
Sbjct: 959 EF 960
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 32/165 (19%)
Query: 23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR------RQKLRI--- 73
FS I L+ + + I GPN GKS L +A + +++ R
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV 500
Query: 74 -----GRHSRH------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122
G HS E + +EA+ KL +FG PI+ LSGG K+++
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALA 560
Query: 123 LVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDS 155
+ HLDT ++ + L+ + +SHDS
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDS 605
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of
Human Tap1
Length = 260
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+SF+YPN D+ L + + G A+VGPN +GKS + LL
Sbjct: 20 VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 63
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
++F+YP + L N+++ I G VA+VG + +GKS + +L+
Sbjct: 347 VTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 35.0 bits (79), Expect = 0.017, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
F YP ++++++ + + +A++GPN GKS L N+L
Sbjct: 673 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 713
Score = 34.7 bits (78), Expect = 0.021, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 108 IANLSGGQKVRVMFT--------LVSM----YHLDTQSIVAVAVTLDEFAGGVVLVSHDS 155
I LSGGQKV+++ L+ + +LD S+ A++ L EF GGV++++H +
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 156 RL 157
Sbjct: 953 EF 954
Score = 33.9 bits (76), Expect = 0.043, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 32/165 (19%)
Query: 23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------VRRRQKLRI--- 73
FS I L+ + + I GPN GKS L +A +++ R
Sbjct: 435 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 494
Query: 74 -----GRHSRH------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122
G HS E + +EA+ KL +FG PI+ LSGG K ++
Sbjct: 495 EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALA 554
Query: 123 LVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDS 155
+ HLDT ++ + L+ + +SHDS
Sbjct: 555 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDS 599
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 35.0 bits (79), Expect = 0.017, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
F YP ++++++ + + +A++GPN GKS L N+L
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVL 719
Score = 34.7 bits (78), Expect = 0.020, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 12/62 (19%)
Query: 108 IANLSGGQKVRVMFT--------LVSM----YHLDTQSIVAVAVTLDEFAGGVVLVSHDS 155
I LSGGQKV+++ L+ + +LD S+ A++ L EF GGV++++H +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 156 RL 157
Sbjct: 959 EF 960
Score = 33.9 bits (76), Expect = 0.044, Method: Composition-based stats.
Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 32/165 (19%)
Query: 23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------VRRRQKLRI--- 73
FS I L+ + + I GPN GKS L +A +++ R
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 500
Query: 74 -----GRHSRH------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122
G HS E + +EA+ KL +FG PI+ LSGG K ++
Sbjct: 501 EHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALA 560
Query: 123 LVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDS 155
+ HLDT ++ + L+ + +SHDS
Sbjct: 561 RAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDS 605
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
++ ++F+Y + LS+V I G VA+VG + +GKS + NL
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF 389
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+SF+YPN +++ L + + G A+VGPN +GKS + LL
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+SF+YPN +++ L + + G A+VGPN +GKS + LL
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+SF+YPN +++ L + + G A+VGPN +GKS + LL
Sbjct: 22 VSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 34.3 bits (77), Expect = 0.033, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 2 KYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN 61
K+ P E P + +EV+ NL+ NV + I +GT VA+ G + +GKS L N
Sbjct: 614 KFIPIPAERRRPDGRWLEVVGAREHNLK-----NVSVKIPLGTFVAVTGVSGSGKSTLVN 668
Query: 62 LLAVR------RRQKLRIGRHS-----RHLEDLLTMEEA 89
+ + R K + G H HL+ ++ ++++
Sbjct: 669 EVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQS 707
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 2 KYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN 61
K+ P E P + +EV+ NL+ NV + I +GT VA+ G + +GKS L N
Sbjct: 312 KFIPIPAERRRPDGRWLEVVGAREHNLK-----NVSVKIPLGTFVAVTGVSGSGKSTLVN 366
Query: 62 LLAVR------RRQKLRIGRHS-----RHLEDLLTMEEA 89
+ + R K + G H HL+ ++ ++++
Sbjct: 367 EVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQS 405
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
++F+YP L N+++ I G VA+VG + +GKS + +L+
Sbjct: 347 VTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 33.5 bits (75), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 16/99 (16%)
Query: 2 KYFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN 61
K+ P E P + +EV+ NL+ NV + I +GT VA+ G + +GKS L N
Sbjct: 614 KFIPIPAERRRPDGRWLEVVGAREHNLK-----NVSVKIPLGTFVAVTGVSGSGKSTLVN 668
Query: 62 LLAVR------RRQKLRIGRHS-----RHLEDLLTMEEA 89
+ + R K + G H HL+ ++ ++++
Sbjct: 669 EVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQS 707
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
L+E Y Q +++V + I G VAI+GPN GKS L LL
Sbjct: 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLL 57
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I+ +SF Y + + L ++++ I+ G VA VG + GKS L NL+
Sbjct: 342 IDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI 387
>pdb|2GXA|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
pdb|2GXA|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
With Ssdna And Mgadp
Length = 274
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 23 FSYPNLQDIRLSNVDM----GIDMGTCVAIVGPNDTGKSPLPN-LLAVRRRQKLRIGRHS 77
F+Y N++ I N GI C+A +GP +TGKS L N L+ L H
Sbjct: 99 FNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHK 158
Query: 78 RH-----LEDLLT--MEEAVHAKLRKF 97
H L D +++A HA R F
Sbjct: 159 SHFWLASLADTRAALVDDATHACWRYF 185
>pdb|2V9P|A Chain A, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|B Chain B, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|C Chain C, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|D Chain D, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|E Chain E, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|F Chain F, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|G Chain G, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|H Chain H, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|I Chain I, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|J Chain J, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|K Chain K, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
pdb|2V9P|L Chain L, Crystal Structure Of Papillomavirus E1 Hexameric Helicase
Dna-Free Form
Length = 305
Score = 32.7 bits (73), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 23 FSYPNLQDIRLSNVDM----GIDMGTCVAIVGPNDTGKSPLPN-LLAVRRRQKLRIGRHS 77
F+Y N++ I N GI C+A +GP +TGKS L N L+ L H
Sbjct: 102 FNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHK 161
Query: 78 RH-----LEDLLT--MEEAVHAKLRKF 97
H L D +++A HA R F
Sbjct: 162 SHFWLASLADTRAALVDDATHACWRYF 188
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
E + F Y D LS V+ + G+ VA++G +GKS L NL+
Sbjct: 345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI 389
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 18 IEVISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+E + F+YP+ D+ L +++ ++ G VA+VG + GKS + +LL
Sbjct: 418 VENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL 464
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+ F+YP +I L + ++ G +A+VGP+ GKS + LL
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL 1125
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
++FSYP + R L +++ I GT A+VG +GKS + LL
Sbjct: 23 VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65
L NV++ I G V+I+GP+ +GKS + N++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65
L NV++ I G V+I+GP+ +GKS + N++
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC 53
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG + +GKS L L+
Sbjct: 9 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 51
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 60/192 (31%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKS-----------PL--------- 59
I FSYP+ ++++ L +++ + G VA+VG + GKS PL
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 60 --------------------PNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGL 99
P L A + +R GR ++++ + +A L
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 100 PGHNHLTPI----ANLSGGQKVRVMFTLV------------SMYHLDTQSIVAVAVTLDE 143
P H T + A LSGGQK R+ + LDT+S V LD+
Sbjct: 513 P-HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 144 FAGG--VVLVSH 153
G ++++H
Sbjct: 572 AREGRTTIVIAH 583
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 72/192 (37%), Gaps = 60/192 (31%)
Query: 21 ISFSYPNLQDIR-LSNVDMGIDMGTCVAIVGPNDTGKS-----------PL--------- 59
I FSYP+ ++++ L +++ + G VA+VG + GKS PL
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 60 --------------------PNLLAVRRRQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGL 99
P L A + +R GR ++++ + +A L
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 100 PGHNHLTPI----ANLSGGQKVRVMFTLV------------SMYHLDTQSIVAVAVTLDE 143
P H T + A LSGGQK R+ + LDT+S V LD+
Sbjct: 513 P-HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 144 FAGG--VVLVSH 153
G ++++H
Sbjct: 572 AREGRTTIVIAH 583
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG + +GKS L L+
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG + +GKS L L+
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG + +GKS L L+
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER
OF HLYB-Nbd
Length = 241
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG + +GKS L L+
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 49
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of
Hlyb With Bound Atp
Length = 247
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG + +GKS L L+
Sbjct: 13 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA----VRRRQKL----- 71
+ FSY + + L ++ I G VA+VGP +GK+ + NLL V R Q L
Sbjct: 360 VWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 72 --RIGRHSRH------LEDLLTMEEAVHAKLRKFGLPG 101
+I R S L+D + V L K+G PG
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENL-KYGNPG 455
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
I F Y + L N+++ I G + IVG +GKS L L+
Sbjct: 9 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI 51
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 29.6 bits (65), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65
L NV++ I G V+I GP+ +GKS N++
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGC 53
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIRL-SNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+ F+YP ++ + + + I G+ A+VGP+ +GKS + +LL
Sbjct: 378 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 21 ISFSYPNLQDIRL-SNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
+ F+YP ++ + + + I G+ A+VGP+ +GKS + +LL
Sbjct: 347 VHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
L V + ++ G I+GPN +GKS L N++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
L V + ++ G I+GPN +GKS L N++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVIT 54
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 14 MLQLIEV-ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPL 59
M+QL V I+ S + L N+++ ++ G V I+GPN +GK+ L
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTL 46
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 69/191 (36%), Gaps = 57/191 (29%)
Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA------------- 64
IE+ S S+ D L +V+ + G +VG N +GK+ L +LA
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDG 71
Query: 65 -------VRRRQKLRIGRHSRHL------EDLL-----------TMEEAVHAKLRKFGLP 100
+R+ S + ED+ M + + L GL
Sbjct: 72 SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLS 131
Query: 101 GHNHLTPIANLSGGQKVRVMFTLVSMYHLDT-----------------QSIVAVAVTLDE 143
G P+ NLSGGQK R+ + SM DT + I V +L
Sbjct: 132 GLAAADPL-NLSGGQKQRL--AIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKN 188
Query: 144 FAGGVVLVSHD 154
G++LV+H+
Sbjct: 189 EGKGIILVTHE 199
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 43 GTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTM 86
G AI+GPN +GKS L LA R ++ G +DLL +
Sbjct: 27 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 43 GTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLEDLLTM 86
G AI+GPN +GKS L LA R ++ G +DLL +
Sbjct: 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
>pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQB|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium
pdb|3AQC|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
pdb|3AQC|D Chain D, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate
Synthase In Complex With Magnesium And Fpp Analogue
Length = 325
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Query: 112 SGGQKVRVMFTLVSMYHLDTQ--SIVAVAVTLD 142
SGG++VR MF L+S + DTQ ++ AV+L+
Sbjct: 42 SGGKRVRPMFVLLSGFLNDTQKDDLIRTAVSLE 74
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
E + FSY + ++ L +V + G +A+VGP+ GKS + LL
Sbjct: 56 FENVHFSYADGRET-LQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|1ZAU|A Chain A, Adenylation Domain Of Nad+ Dependent Dna Ligase From
M.Tuberculosis
Length = 328
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLR 72
P+ +++EV + L D + N + ++ G N S AV R++LR
Sbjct: 174 PVPEVLEVRGEVFFRLDDFQALNASL-VEEGKAPFANPRNSAAGSLRQKDPAVTARRRLR 232
Query: 73 IGRHS-RHLEDL--LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYHL 129
+ H H+E T+ +A A LR +GLP H T +L+G ++ R+ + + +
Sbjct: 233 MICHGLGHVEGFRPATLHQAYLA-LRAWGLPVSEHTTLATDLAGVRE-RIDYWGEHRHEV 290
Query: 130 DTQSIVAVAVTLDEFA 145
D I V V +DE A
Sbjct: 291 D-HEIDGVVVKVDEVA 305
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPL 59
L+N+++ I G +A++GP+ +GKS L
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTL 45
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 43 GTCVAIVGPNDTGKSPLPNLLA 64
G V IVGPN TGKS +LA
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILA 68
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 18 IEVISFSY-----PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
IEV++ S+ L+ L NV + I+ G C+ + G +GKS L ++A
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA 54
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 18 IEVISFSY-----PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
IEV++ S+ L+ L NV + I+ G C+ + G +GKS L ++A
Sbjct: 5 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVA 56
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 12 SPMLQLIEV--ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKS 57
S MLQ+I+V + S+ +L+ ++ NV I G V ++GP+ +GKS
Sbjct: 19 SHMLQMIDVHQLKKSFGSLEVLKGINVH--IREGEVVVVIGPSGSGKS 64
>pdb|3SGI|A Chain A, Crystal Structure Of Dna Ligase A Brct Domain Deleted
Mutant Of Mycobacterium Tuberculosis
Length = 615
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 64 AVRRRQKLRIGRHSR-HLEDL--LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM 120
AV R++LR+ H H+E T+ +A A LR +GLP H T +L+G ++ R+
Sbjct: 224 AVTARRRLRMICHGLGHVEGFRPATLHQAYLA-LRAWGLPVSEHTTLATDLAGVRE-RID 281
Query: 121 FTLVSMYHLDTQSIVAVAVTLDEFA 145
+ + +D I V V +DE A
Sbjct: 282 YWGEHRHEVD-HEIDGVVVKVDEVA 305
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
L V + + G I+GPN +GKS L N++
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVIT 54
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase
Sufc From Thermus Thermophilus Hb8
Length = 250
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
L V++ + G A++GPN GKS L +LA
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILA 50
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 43 GTCVAIVGPNDTGKSPLPNLLA 64
G V IVGPN TGK+ +LA
Sbjct: 103 GMVVGIVGPNGTGKTTAVKILA 124
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 43 GTCVAIVGPNDTGKSPLPNLLA 64
G V IVGPN TGK+ +LA
Sbjct: 117 GMVVGIVGPNGTGKTTAVKILA 138
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
+++ +S + + + L NV++ I+ G I+GP+ GK+ ++A
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA 52
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 26.6 bits (57), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64
+++ +S + + + L NV++ I+ G I+GP+ GK+ ++A
Sbjct: 5 IVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIA 52
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
L N+++ I+ G +AI G +GK+ L L+
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
L N+++ I+ G +AI G +GK+ L L+
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPL------PNLLAVRRRQKLRIG 74
L N+D+ I +G V + G + +GKS L P L+ + + KL G
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAG 647
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
L N+++ I+ G +AI G +GK+ L L+
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator
(Cftr) Nucleotide- Binding Domain One (Nbd1) With Atp,
I4122 Space Group
Length = 286
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
L N+++ I+ G +AI G +GK+ L L+
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLL 63
L N+++ I+ G +AI G +GK+ L L+
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLI 84
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---VRRRQKLRIGRHSRHLEDLLTMEEAV 90
++++ I G V VGP+ GKS L ++A L IG + + D E V
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAERGV 77
Query: 91 HAKLRKFGLPGHNHLTPIANLSGGQKV 117
+ + L + HL+ N+S G K+
Sbjct: 78 GMVFQSYAL--YPHLSVAENMSFGLKL 102
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---VRRRQKLRIGRHSRHLEDLLTMEEAV 90
++++ I G V VGP+ GKS L ++A L IG + + D E V
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAERGV 77
Query: 91 HAKLRKFGLPGHNHLTPIANLSGGQKV 117
+ + L + HL+ N+S G K+
Sbjct: 78 GMVFQSYAL--YPHLSVAENMSFGLKL 102
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA---VRRRQKLRIGRHSRHLEDLLTMEEAV 90
++++ I G V VGP+ GKS L ++A L IG + + D E V
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG--EKRMNDTPPAERGV 77
Query: 91 HAKLRKFGLPGHNHLTPIANLSGGQKV 117
+ + L + HL+ N+S G K+
Sbjct: 78 GMVFQSYAL--YPHLSVAENMSFGLKL 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,557,916
Number of Sequences: 62578
Number of extensions: 170456
Number of successful extensions: 564
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 88
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)