Query 044538
Match_columns 158
No_of_seqs 243 out of 1665
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 1.2E-36 2.6E-41 222.6 10.4 141 14-158 2-199 (240)
2 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.3E-36 7.2E-41 227.1 11.4 141 13-157 3-201 (254)
3 COG1116 TauB ABC-type nitrate/ 100.0 5.9E-36 1.3E-40 223.6 11.5 139 15-157 4-193 (248)
4 COG1136 SalX ABC-type antimicr 100.0 2.9E-35 6.2E-40 219.0 11.8 142 15-157 2-205 (226)
5 COG2884 FtsE Predicted ATPase 100.0 2.1E-35 4.6E-40 212.2 8.9 141 14-157 1-199 (223)
6 COG1125 OpuBA ABC-type proline 100.0 4.6E-35 9.9E-40 218.9 8.3 141 14-157 1-198 (309)
7 COG1135 AbcC ABC-type metal io 100.0 1.7E-34 3.7E-39 220.8 10.3 142 14-157 1-204 (339)
8 COG1124 DppF ABC-type dipeptid 100.0 4E-34 8.8E-39 212.6 8.6 144 13-157 2-204 (252)
9 COG1120 FepC ABC-type cobalami 100.0 9.1E-34 2E-38 214.7 10.4 140 14-157 2-201 (258)
10 COG3842 PotA ABC-type spermidi 100.0 4.5E-33 9.8E-38 219.1 9.5 141 13-157 4-199 (352)
11 COG3638 ABC-type phosphate/pho 100.0 7.2E-33 1.6E-37 205.0 7.5 142 13-157 2-210 (258)
12 COG3839 MalK ABC-type sugar tr 100.0 5.5E-32 1.2E-36 211.9 10.9 138 15-156 4-195 (338)
13 COG1122 CbiO ABC-type cobalt t 100.0 4.9E-32 1.1E-36 204.2 9.4 141 14-157 3-201 (235)
14 COG1117 PstB ABC-type phosphat 100.0 8.2E-32 1.8E-36 196.9 8.5 141 13-156 6-209 (253)
15 TIGR00960 3a0501s02 Type II (G 100.0 9E-31 1.9E-35 195.4 12.1 141 15-157 2-200 (216)
16 TIGR02314 ABC_MetN D-methionin 100.0 1E-30 2.2E-35 207.1 12.6 142 14-157 1-203 (343)
17 COG1127 Ttg2A ABC-type transpo 100.0 7.1E-31 1.5E-35 194.9 10.1 143 12-157 6-208 (263)
18 COG1118 CysA ABC-type sulfate/ 100.0 8.4E-31 1.8E-35 200.3 8.9 133 22-157 9-200 (345)
19 cd03226 ABC_cobalt_CbiO_domain 100.0 5.1E-30 1.1E-34 190.0 12.9 136 19-157 4-188 (205)
20 PRK11629 lolD lipoprotein tran 100.0 5E-30 1.1E-34 193.5 12.2 143 13-157 4-208 (233)
21 PRK13537 nodulation ABC transp 100.0 3.9E-30 8.4E-35 201.4 11.7 142 12-157 5-200 (306)
22 PRK11650 ugpC glycerol-3-phosp 100.0 3.7E-30 8.1E-35 205.0 11.6 141 14-157 3-197 (356)
23 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.6E-30 1.2E-34 191.3 11.8 139 17-157 3-203 (218)
24 PRK11308 dppF dipeptide transp 100.0 3.9E-30 8.4E-35 202.9 11.2 145 12-157 3-217 (327)
25 PRK13543 cytochrome c biogenes 100.0 1.2E-29 2.5E-34 189.4 13.2 148 6-157 3-199 (214)
26 TIGR03265 PhnT2 putative 2-ami 100.0 4.6E-30 9.9E-35 204.3 11.6 140 14-157 4-197 (353)
27 PRK11432 fbpC ferric transport 100.0 5.4E-30 1.2E-34 203.7 11.9 141 13-157 5-199 (351)
28 cd03259 ABC_Carb_Solutes_like 100.0 6.1E-30 1.3E-34 190.5 11.5 137 17-157 3-193 (213)
29 PRK11247 ssuB aliphatic sulfon 100.0 6.7E-30 1.5E-34 195.6 11.9 142 12-157 10-196 (257)
30 TIGR01288 nodI ATP-binding ABC 100.0 4E-30 8.7E-35 201.0 10.7 141 13-157 3-197 (303)
31 PRK15079 oligopeptide ABC tran 100.0 7.5E-30 1.6E-34 201.5 12.2 148 9-157 3-224 (331)
32 PRK13536 nodulation factor exp 100.0 7.1E-30 1.5E-34 202.3 12.0 141 13-157 40-234 (340)
33 PRK13651 cobalt transporter AT 100.0 8E-30 1.7E-34 199.5 11.9 142 15-157 3-227 (305)
34 cd03225 ABC_cobalt_CbiO_domain 100.0 6.9E-30 1.5E-34 189.9 11.0 136 21-157 5-196 (211)
35 cd03261 ABC_Org_Solvent_Resist 100.0 9.2E-30 2E-34 192.2 11.8 137 17-157 3-199 (235)
36 PRK13637 cbiO cobalt transport 100.0 1.3E-29 2.7E-34 196.9 12.7 141 15-157 3-207 (287)
37 PRK13634 cbiO cobalt transport 100.0 1.2E-29 2.7E-34 197.2 12.6 142 15-157 3-208 (290)
38 TIGR02673 FtsE cell division A 100.0 9.4E-30 2E-34 189.6 11.4 140 15-157 2-199 (214)
39 PRK13643 cbiO cobalt transport 100.0 1.2E-29 2.7E-34 197.0 12.4 143 14-157 1-206 (288)
40 PRK10636 putative ABC transpor 100.0 5.2E-30 1.1E-34 217.4 11.2 144 11-157 309-489 (638)
41 PRK09452 potA putrescine/sperm 100.0 8.5E-30 1.9E-34 204.0 11.7 142 12-157 12-207 (375)
42 TIGR02211 LolD_lipo_ex lipopro 100.0 1.3E-29 2.9E-34 189.6 11.8 140 16-157 3-204 (221)
43 COG4608 AppF ABC-type oligopep 100.0 1.2E-29 2.7E-34 191.8 11.5 143 14-157 4-172 (268)
44 PRK11248 tauB taurine transpor 100.0 1.1E-29 2.4E-34 194.2 11.3 139 15-157 2-191 (255)
45 PRK11153 metN DL-methionine tr 100.0 1.4E-29 3E-34 201.0 12.2 142 14-157 1-203 (343)
46 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.9E-29 4.1E-34 188.8 12.1 139 17-157 3-194 (220)
47 PRK13647 cbiO cobalt transport 100.0 1.7E-29 3.8E-34 194.9 12.1 141 14-157 4-200 (274)
48 TIGR03258 PhnT 2-aminoethylpho 100.0 1E-29 2.2E-34 202.8 11.0 139 15-157 6-201 (362)
49 COG1123 ATPase components of v 100.0 6.5E-30 1.4E-34 209.3 9.7 146 11-157 277-492 (539)
50 cd03301 ABC_MalK_N The N-termi 100.0 1.9E-29 4.1E-34 187.8 11.3 137 17-157 3-193 (213)
51 PRK13635 cbiO cobalt transport 100.0 2.8E-29 6.2E-34 194.2 12.5 143 13-157 4-203 (279)
52 PRK13650 cbiO cobalt transport 100.0 2.3E-29 5E-34 194.7 12.0 142 14-157 4-203 (279)
53 COG1131 CcmA ABC-type multidru 100.0 2E-29 4.4E-34 196.1 11.7 140 15-157 5-199 (293)
54 cd03265 ABC_DrrA DrrA is the A 100.0 1.8E-29 3.9E-34 188.9 10.9 137 17-157 3-194 (220)
55 PRK13646 cbiO cobalt transport 100.0 2.6E-29 5.6E-34 195.0 12.2 142 15-157 3-208 (286)
56 PRK13631 cbiO cobalt transport 100.0 3.9E-29 8.5E-34 196.7 13.4 144 12-157 19-238 (320)
57 TIGR02315 ABC_phnC phosphonate 100.0 2.5E-29 5.4E-34 190.6 11.8 140 15-157 2-208 (243)
58 cd03235 ABC_Metallic_Cations A 100.0 1.1E-29 2.4E-34 189.1 9.5 136 18-157 3-194 (213)
59 COG4181 Predicted ABC-type tra 100.0 2.6E-29 5.7E-34 178.5 10.9 142 14-157 6-209 (228)
60 PRK11022 dppD dipeptide transp 100.0 1.4E-29 3.1E-34 199.7 10.5 143 14-157 3-216 (326)
61 PRK11831 putative ABC transpor 100.0 2.2E-29 4.8E-34 193.9 11.2 142 12-157 5-206 (269)
62 TIGR01166 cbiO cobalt transpor 100.0 6.7E-29 1.5E-33 182.0 13.2 128 30-158 5-190 (190)
63 PRK09536 btuD corrinoid ABC tr 100.0 1.9E-29 4.1E-34 203.3 11.1 140 14-157 3-201 (402)
64 PRK13648 cbiO cobalt transport 100.0 7.5E-29 1.6E-33 190.9 13.9 144 12-157 5-205 (269)
65 PRK13640 cbiO cobalt transport 100.0 4.3E-29 9.4E-34 193.4 12.6 143 13-157 4-206 (282)
66 PRK13538 cytochrome c biogenes 100.0 3.7E-29 8E-34 185.4 11.5 140 15-158 2-192 (204)
67 PRK13641 cbiO cobalt transport 100.0 3.9E-29 8.5E-34 194.1 12.2 142 15-157 3-207 (287)
68 COG4525 TauB ABC-type taurine 100.0 3.6E-29 7.8E-34 181.1 11.0 142 14-157 3-195 (259)
69 cd03266 ABC_NatA_sodium_export 100.0 2.9E-29 6.4E-34 187.4 10.9 141 15-157 2-198 (218)
70 PRK13632 cbiO cobalt transport 100.0 7.2E-29 1.6E-33 191.2 13.4 143 13-157 6-205 (271)
71 COG0488 Uup ATPase components 100.0 1.3E-29 2.8E-34 209.6 9.8 146 11-158 318-499 (530)
72 PRK11000 maltose/maltodextrin 100.0 2.9E-29 6.3E-34 200.8 11.4 139 15-157 4-196 (369)
73 PRK10584 putative ABC transpor 100.0 4.4E-29 9.5E-34 187.7 11.6 143 13-157 5-209 (228)
74 PRK13633 cobalt transporter AT 100.0 6.6E-29 1.4E-33 192.2 12.8 143 13-157 3-207 (280)
75 PRK15112 antimicrobial peptide 100.0 3.7E-29 8E-34 192.4 11.2 144 13-157 3-212 (267)
76 cd03296 ABC_CysA_sulfate_impor 100.0 3.6E-29 7.9E-34 189.5 11.0 139 15-157 3-199 (239)
77 PRK11607 potG putrescine trans 100.0 4.1E-29 9E-34 200.2 11.9 142 12-157 17-212 (377)
78 PRK15093 antimicrobial peptide 100.0 3.5E-29 7.6E-34 197.8 11.3 143 14-157 3-221 (330)
79 cd03292 ABC_FtsE_transporter F 100.0 5.7E-29 1.2E-33 185.2 11.8 138 17-157 3-198 (214)
80 PRK09473 oppD oligopeptide tra 100.0 3.3E-29 7.1E-34 197.9 11.0 145 12-157 10-224 (330)
81 PRK09544 znuC high-affinity zi 100.0 3.4E-29 7.4E-34 191.1 10.7 141 13-157 3-183 (251)
82 cd03256 ABC_PhnC_transporter A 100.0 8E-29 1.7E-33 187.5 12.5 138 17-157 3-207 (241)
83 cd03263 ABC_subfamily_A The AB 100.0 5E-29 1.1E-33 186.3 11.1 139 17-157 3-194 (220)
84 PRK10247 putative ABC transpor 100.0 9.1E-29 2E-33 185.9 12.5 143 12-157 5-200 (225)
85 PRK15064 ABC transporter ATP-b 100.0 4.1E-29 9E-34 208.2 11.8 142 13-157 318-497 (530)
86 cd03269 ABC_putative_ATPase Th 100.0 3.7E-29 7.9E-34 186.0 10.3 137 17-157 3-190 (210)
87 PRK15064 ABC transporter ATP-b 100.0 3.7E-29 8.1E-34 208.5 11.0 140 15-157 2-214 (530)
88 PRK10575 iron-hydroxamate tran 100.0 8.2E-29 1.8E-33 190.3 12.0 144 10-157 7-210 (265)
89 cd03268 ABC_BcrA_bacitracin_re 100.0 4.2E-29 9.1E-34 185.4 10.1 137 17-157 3-188 (208)
90 PRK13636 cbiO cobalt transport 100.0 9.1E-29 2E-33 191.7 12.3 142 13-157 4-204 (283)
91 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-28 2.2E-33 186.7 12.2 139 15-157 2-195 (236)
92 COG3840 ThiQ ABC-type thiamine 100.0 7.2E-29 1.6E-33 177.7 10.7 136 15-156 2-191 (231)
93 PRK13638 cbiO cobalt transport 100.0 5.5E-29 1.2E-33 191.8 10.8 140 14-157 1-198 (271)
94 PRK13649 cbiO cobalt transport 100.0 1.1E-28 2.4E-33 190.8 12.4 142 15-157 3-207 (280)
95 TIGR02769 nickel_nikE nickel i 100.0 6.2E-29 1.3E-33 190.9 10.8 143 14-157 2-213 (265)
96 COG0444 DppD ABC-type dipeptid 100.0 5.1E-29 1.1E-33 192.1 10.3 141 16-157 3-216 (316)
97 PRK11147 ABC transporter ATPas 100.0 5.9E-29 1.3E-33 211.0 11.7 143 12-157 317-499 (635)
98 PRK11701 phnK phosphonate C-P 100.0 1.2E-28 2.5E-33 188.7 12.1 142 13-157 5-214 (258)
99 cd03257 ABC_NikE_OppD_transpor 100.0 7.4E-29 1.6E-33 186.2 10.8 142 15-157 2-208 (228)
100 cd03260 ABC_PstB_phosphate_tra 100.0 1.4E-28 3.1E-33 184.7 12.3 138 17-157 3-202 (227)
101 PRK10636 putative ABC transpor 100.0 5.5E-29 1.2E-33 211.2 11.2 140 15-157 2-208 (638)
102 PRK15134 microcin C ABC transp 100.0 7.8E-29 1.7E-33 206.5 11.9 145 12-157 3-219 (529)
103 PRK10851 sulfate/thiosulfate t 100.0 9.1E-29 2E-33 196.8 11.7 139 15-157 3-199 (353)
104 COG0488 Uup ATPase components 100.0 4.1E-29 8.9E-34 206.6 9.9 139 14-157 3-212 (530)
105 PRK10619 histidine/lysine/argi 100.0 1.2E-28 2.7E-33 188.4 11.7 143 12-157 3-214 (257)
106 TIGR01978 sufC FeS assembly AT 100.0 1.2E-28 2.7E-33 186.7 11.6 138 17-157 3-206 (243)
107 PRK13639 cbiO cobalt transport 100.0 1.8E-28 3.9E-33 189.3 12.6 140 15-157 2-199 (275)
108 PRK10908 cell division protein 100.0 1.6E-28 3.5E-33 184.0 11.9 140 15-157 2-199 (222)
109 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-28 2.8E-33 185.7 11.5 141 15-157 2-203 (233)
110 PRK13644 cbiO cobalt transport 100.0 1.4E-28 3E-33 189.9 11.8 140 15-157 2-198 (274)
111 TIGR01186 proV glycine betaine 100.0 1.1E-28 2.3E-33 196.8 11.4 127 30-157 6-192 (363)
112 cd03219 ABC_Mj1267_LivG_branch 100.0 1.1E-28 2.3E-33 186.4 10.8 137 17-157 3-205 (236)
113 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-28 2.3E-33 183.6 10.6 137 17-157 3-197 (213)
114 TIGR01188 drrA daunorubicin re 100.0 1E-28 2.3E-33 193.0 11.0 126 31-157 7-186 (302)
115 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.1E-28 2.5E-33 206.4 11.7 143 12-157 320-502 (552)
116 TIGR03411 urea_trans_UrtD urea 100.0 1.6E-28 3.5E-33 186.1 11.4 140 14-157 2-204 (242)
117 PRK11264 putative amino-acid A 100.0 1.3E-28 2.7E-33 187.5 10.9 140 14-157 3-206 (250)
118 PRK13645 cbiO cobalt transport 100.0 2.3E-28 4.9E-33 190.0 12.5 143 14-157 6-213 (289)
119 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-28 2.8E-33 192.3 11.2 139 15-157 3-194 (301)
120 PRK13539 cytochrome c biogenes 100.0 1.9E-28 4.2E-33 182.0 11.5 140 14-157 2-189 (207)
121 PRK11819 putative ABC transpor 100.0 1.9E-28 4.2E-33 205.2 12.8 142 12-157 4-222 (556)
122 COG1123 ATPase components of v 100.0 1.3E-28 2.8E-33 201.7 11.4 144 13-157 4-217 (539)
123 TIGR02323 CP_lyasePhnK phospho 100.0 1.6E-28 3.4E-33 187.4 11.1 142 13-157 2-211 (253)
124 PRK13549 xylose transporter AT 100.0 1.2E-28 2.7E-33 204.3 11.3 141 13-157 4-205 (506)
125 PLN03073 ABC transporter F fam 100.0 1.4E-28 3E-33 210.4 11.8 143 13-157 507-686 (718)
126 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.1E-28 4.5E-33 185.6 11.5 138 17-157 3-198 (242)
127 cd03238 ABC_UvrA The excision 100.0 1.4E-28 3.1E-33 178.4 10.2 127 28-157 6-151 (176)
128 PRK13652 cbiO cobalt transport 100.0 2.8E-28 6.2E-33 188.4 12.5 141 14-157 3-200 (277)
129 PRK11300 livG leucine/isoleuci 100.0 1.8E-28 3.9E-33 187.2 11.1 141 13-157 4-216 (255)
130 PRK11819 putative ABC transpor 100.0 1.6E-28 3.4E-33 205.7 11.7 143 12-157 322-504 (556)
131 PRK10261 glutathione transport 100.0 1.8E-28 4E-33 207.6 12.2 148 9-157 7-231 (623)
132 PRK09984 phosphonate/organopho 100.0 2E-28 4.3E-33 187.7 11.3 141 13-157 3-215 (262)
133 COG4604 CeuD ABC-type enteroch 100.0 2.4E-29 5.3E-34 182.2 5.8 141 14-158 1-199 (252)
134 PRK10938 putative molybdenum t 100.0 1.1E-28 2.5E-33 203.8 10.7 140 14-157 3-197 (490)
135 PRK09493 glnQ glutamine ABC tr 100.0 1.9E-28 4.1E-33 185.6 11.0 139 15-157 2-198 (240)
136 PRK15439 autoinducer 2 ABC tra 100.0 2.6E-28 5.7E-33 202.6 12.9 142 12-157 9-202 (510)
137 TIGR02324 CP_lyasePhnL phospho 100.0 2.7E-28 5.8E-33 183.0 11.7 142 15-157 2-211 (224)
138 PRK15056 manganese/iron transp 100.0 2.5E-28 5.3E-33 188.3 11.8 141 14-157 6-204 (272)
139 cd03214 ABC_Iron-Siderophores_ 100.0 2.7E-28 5.9E-33 177.5 11.4 135 19-157 4-160 (180)
140 TIGR03608 L_ocin_972_ABC putat 100.0 5.6E-28 1.2E-32 179.0 13.2 133 22-157 5-196 (206)
141 cd03218 ABC_YhbG The ABC trans 100.0 2.4E-28 5.3E-33 184.0 11.3 136 17-156 3-194 (232)
142 cd03264 ABC_drug_resistance_li 100.0 1.5E-28 3.3E-33 182.7 9.9 136 17-157 3-191 (211)
143 cd03223 ABCD_peroxisomal_ALDP 100.0 4.1E-28 8.9E-33 174.6 11.6 126 17-157 3-150 (166)
144 cd03231 ABC_CcmA_heme_exporter 100.0 6.6E-28 1.4E-32 178.3 13.0 136 17-156 3-186 (201)
145 PRK14250 phosphate ABC transpo 100.0 2.7E-28 5.9E-33 185.0 11.2 140 15-157 4-194 (241)
146 PRK11231 fecE iron-dicitrate t 100.0 2.9E-28 6.2E-33 186.2 11.2 140 14-157 2-200 (255)
147 PRK13540 cytochrome c biogenes 100.0 8.8E-28 1.9E-32 177.5 13.4 140 15-158 2-190 (200)
148 TIGR01189 ccmA heme ABC export 100.0 6.5E-28 1.4E-32 177.9 12.6 135 18-156 4-188 (198)
149 PRK13642 cbiO cobalt transport 100.0 5E-28 1.1E-32 187.0 12.5 142 14-157 4-203 (277)
150 PRK14254 phosphate ABC transpo 100.0 4.5E-28 9.7E-33 188.0 12.1 144 11-157 36-241 (285)
151 PRK09700 D-allose transporter 100.0 3E-28 6.6E-33 202.2 11.7 141 13-157 4-207 (510)
152 PRK14242 phosphate transporter 100.0 4.7E-28 1E-32 184.7 11.7 143 12-157 4-210 (253)
153 PRK11124 artP arginine transpo 100.0 4.6E-28 1E-32 183.7 11.6 139 15-157 3-203 (242)
154 PRK10261 glutathione transport 100.0 2.8E-28 6E-33 206.5 11.3 145 12-157 311-526 (623)
155 TIGR00972 3a0107s01c2 phosphat 100.0 3.8E-28 8.2E-33 184.7 10.9 139 15-157 2-205 (247)
156 TIGR03005 ectoine_ehuA ectoine 100.0 4.9E-28 1.1E-32 184.6 11.5 137 17-157 3-209 (252)
157 PRK10762 D-ribose transporter 100.0 3.2E-28 6.9E-33 201.7 11.2 141 13-157 3-203 (501)
158 PRK14273 phosphate ABC transpo 100.0 4.2E-28 9.2E-33 185.1 11.1 143 12-157 5-211 (254)
159 PRK10938 putative molybdenum t 100.0 3.4E-28 7.3E-33 201.0 11.3 143 12-158 258-465 (490)
160 PRK14247 phosphate ABC transpo 100.0 4.2E-28 9E-33 184.7 10.9 141 14-157 3-207 (250)
161 CHL00131 ycf16 sulfate ABC tra 100.0 8.2E-28 1.8E-32 183.2 12.4 143 12-157 5-213 (252)
162 PRK14248 phosphate ABC transpo 100.0 6.8E-28 1.5E-32 185.4 12.0 144 11-157 18-225 (268)
163 TIGR02633 xylG D-xylose ABC tr 100.0 4.1E-28 8.9E-33 200.9 11.5 140 15-157 2-203 (500)
164 COG4555 NatA ABC-type Na+ tran 100.0 7.6E-29 1.6E-33 180.0 6.2 141 14-157 1-195 (245)
165 cd03294 ABC_Pro_Gly_Bertaine T 100.0 4.5E-28 9.8E-33 186.6 10.9 133 22-157 31-223 (269)
166 PRK10253 iron-enterobactin tra 100.0 4.1E-28 8.9E-33 186.4 10.6 141 13-157 6-206 (265)
167 PRK09580 sufC cysteine desulfu 100.0 8.3E-28 1.8E-32 182.7 12.2 140 15-157 2-207 (248)
168 PRK10418 nikD nickel transport 100.0 5.8E-28 1.3E-32 184.5 11.2 140 14-157 4-203 (254)
169 TIGR03410 urea_trans_UrtE urea 100.0 2.5E-28 5.5E-33 183.7 9.0 137 17-157 3-194 (230)
170 PRK14235 phosphate transporter 100.0 6.3E-28 1.4E-32 185.6 11.3 143 12-157 17-224 (267)
171 COG0411 LivG ABC-type branched 100.0 1.4E-28 3.1E-33 183.0 7.3 142 13-158 3-213 (250)
172 COG4598 HisP ABC-type histidin 100.0 5.5E-28 1.2E-32 173.2 10.0 142 13-158 5-215 (256)
173 PRK14268 phosphate ABC transpo 100.0 6.7E-28 1.4E-32 184.5 11.2 143 12-157 10-215 (258)
174 PRK13549 xylose transporter AT 100.0 5.1E-28 1.1E-32 200.7 11.4 145 12-157 257-467 (506)
175 TIGR03269 met_CoM_red_A2 methy 100.0 8.7E-28 1.9E-32 199.8 12.6 145 12-157 277-490 (520)
176 PRK13541 cytochrome c biogenes 100.0 2E-27 4.3E-32 175.0 13.1 139 15-158 2-186 (195)
177 cd03224 ABC_TM1139_LivF_branch 100.0 6.8E-28 1.5E-32 180.4 10.7 137 17-157 3-194 (222)
178 PRK11288 araG L-arabinose tran 100.0 6.9E-28 1.5E-32 199.7 11.7 141 13-157 3-202 (501)
179 PRK10895 lipopolysaccharide AB 100.0 6.2E-28 1.3E-32 182.9 10.5 139 14-156 3-198 (241)
180 COG1119 ModF ABC-type molybden 100.0 6.9E-28 1.5E-32 179.5 10.1 144 11-158 28-236 (257)
181 PRK13548 hmuV hemin importer A 100.0 8.6E-28 1.9E-32 184.0 11.0 140 14-157 2-203 (258)
182 TIGR03269 met_CoM_red_A2 methy 100.0 6.7E-28 1.5E-32 200.5 11.2 137 17-157 3-231 (520)
183 PRK15134 microcin C ABC transp 100.0 6.6E-28 1.4E-32 200.9 11.1 145 12-157 273-488 (529)
184 PRK14259 phosphate ABC transpo 100.0 1E-27 2.2E-32 184.6 11.4 143 12-157 11-215 (269)
185 TIGR02633 xylG D-xylose ABC tr 99.9 8.6E-28 1.9E-32 199.0 11.6 144 13-157 256-465 (500)
186 PRK11144 modC molybdate transp 99.9 1.1E-27 2.4E-32 190.7 11.8 133 19-157 5-191 (352)
187 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.3E-27 2.9E-32 177.7 11.3 135 17-157 3-191 (211)
188 PRK11147 ABC transporter ATPas 99.9 8.9E-28 1.9E-32 203.9 11.7 138 14-157 3-215 (635)
189 cd03245 ABCC_bacteriocin_expor 99.9 1.3E-27 2.9E-32 178.6 11.1 141 16-157 4-201 (220)
190 TIGR03873 F420-0_ABC_ATP propo 99.9 1.5E-27 3.3E-32 182.3 11.6 138 16-157 3-199 (256)
191 PRK14267 phosphate ABC transpo 99.9 1.1E-27 2.3E-32 182.8 10.7 142 13-157 3-210 (253)
192 TIGR03740 galliderm_ABC gallid 99.9 1.1E-27 2.3E-32 179.7 10.5 137 17-157 3-186 (223)
193 PRK14265 phosphate ABC transpo 99.9 2.3E-27 5E-32 183.1 12.6 144 11-157 17-222 (274)
194 PRK10070 glycine betaine trans 99.9 1.3E-27 2.9E-32 192.5 11.7 126 31-157 42-227 (400)
195 PRK14241 phosphate transporter 99.9 1.4E-27 3.1E-32 182.7 11.1 141 14-157 4-209 (258)
196 PLN03073 ABC transporter F fam 99.9 7.7E-28 1.7E-32 205.9 10.6 141 14-157 177-403 (718)
197 PRK10771 thiQ thiamine transpo 99.9 1.5E-27 3.1E-32 180.0 10.9 137 15-157 2-192 (232)
198 PRK10419 nikE nickel transport 99.9 1.4E-27 2.9E-32 183.8 10.8 143 14-157 3-214 (268)
199 COG4175 ProV ABC-type proline/ 99.9 1.2E-27 2.5E-32 183.8 10.1 126 32-158 43-228 (386)
200 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 1.3E-27 2.9E-32 179.5 10.3 139 15-157 23-204 (224)
201 PRK14237 phosphate transporter 99.9 2.9E-27 6.3E-32 181.9 12.3 143 12-157 18-224 (267)
202 PRK14245 phosphate ABC transpo 99.9 2.1E-27 4.5E-32 180.9 11.3 142 13-157 2-207 (250)
203 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 1.5E-27 3.3E-32 199.7 11.5 141 13-157 3-220 (552)
204 PRK14275 phosphate ABC transpo 99.9 1.6E-27 3.4E-32 185.0 10.8 144 11-157 36-243 (286)
205 cd03252 ABCC_Hemolysin The ABC 99.9 2.9E-27 6.3E-32 178.7 11.8 139 17-157 3-199 (237)
206 cd03267 ABC_NatA_like Similar 99.9 1.5E-27 3.2E-32 180.5 10.1 127 30-157 34-216 (236)
207 cd03299 ABC_ModC_like Archeal 99.9 3.2E-27 7E-32 178.5 11.8 136 17-157 3-192 (235)
208 PRK14271 phosphate ABC transpo 99.9 3.2E-27 6.9E-32 182.5 12.0 143 12-157 19-224 (276)
209 PRK14251 phosphate ABC transpo 99.9 2.1E-27 4.5E-32 180.9 10.8 141 14-157 4-208 (251)
210 PRK09700 D-allose transporter 99.9 1.3E-27 2.8E-32 198.4 10.3 139 13-157 264-471 (510)
211 cd03244 ABCC_MRP_domain2 Domai 99.9 2.4E-27 5.3E-32 177.3 10.8 141 16-157 4-200 (221)
212 cd03248 ABCC_TAP TAP, the Tran 99.9 4.8E-27 1E-31 176.4 12.4 144 12-157 9-211 (226)
213 PRK14239 phosphate transporter 99.9 2.8E-27 6E-32 180.3 11.3 142 13-157 4-209 (252)
214 TIGR02982 heterocyst_DevA ABC 99.9 6.1E-27 1.3E-31 175.3 12.8 139 16-156 3-203 (220)
215 PRK10744 pstB phosphate transp 99.9 2.9E-27 6.3E-32 181.2 11.2 143 12-157 11-217 (260)
216 PRK14262 phosphate ABC transpo 99.9 3E-27 6.5E-32 180.0 11.1 141 14-157 3-207 (250)
217 TIGR01277 thiQ thiamine ABC tr 99.9 4.3E-27 9.3E-32 175.3 11.7 135 17-157 3-191 (213)
218 PRK14255 phosphate ABC transpo 99.9 3.3E-27 7.2E-32 180.0 11.3 143 12-157 3-209 (252)
219 PRK14274 phosphate ABC transpo 99.9 4.3E-27 9.3E-32 180.1 11.9 143 12-157 10-216 (259)
220 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 1.8E-27 4E-32 203.5 10.8 141 15-156 452-646 (686)
221 PRK14240 phosphate transporter 99.9 3.9E-27 8.4E-32 179.4 11.4 140 15-157 4-207 (250)
222 PRK11614 livF leucine/isoleuci 99.9 1.9E-27 4.2E-32 179.8 9.6 141 13-157 4-199 (237)
223 cd03247 ABCC_cytochrome_bd The 99.9 4.3E-27 9.4E-32 170.9 11.1 134 17-157 3-159 (178)
224 PRK14270 phosphate ABC transpo 99.9 3.6E-27 7.8E-32 179.7 11.1 143 12-157 2-208 (251)
225 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.4E-27 3E-32 181.8 8.7 133 23-157 1-178 (246)
226 PRK13547 hmuV hemin importer A 99.9 3.8E-27 8.3E-32 181.7 11.3 139 15-157 2-217 (272)
227 PRK14269 phosphate ABC transpo 99.9 4.7E-27 1E-31 178.6 11.5 140 15-157 3-203 (246)
228 COG4559 ABC-type hemin transpo 99.9 4.4E-27 9.6E-32 172.0 10.8 139 15-157 2-203 (259)
229 PRK13409 putative ATPase RIL; 99.9 2.3E-27 5E-32 199.5 10.7 141 12-157 338-516 (590)
230 TIGR02868 CydC thiol reductant 99.9 4.9E-27 1.1E-31 195.6 12.6 139 15-155 335-529 (529)
231 PRK14264 phosphate ABC transpo 99.9 6E-27 1.3E-31 183.3 12.2 143 12-157 43-261 (305)
232 COG4987 CydC ABC-type transpor 99.9 4.4E-27 9.4E-32 190.7 11.5 143 14-157 336-535 (573)
233 TIGR02142 modC_ABC molybdenum 99.9 4.8E-27 1E-31 187.2 11.7 131 22-157 6-194 (354)
234 cd03250 ABCC_MRP_domain1 Domai 99.9 7.6E-27 1.6E-31 172.9 11.9 139 17-157 3-190 (204)
235 COG2274 SunT ABC-type bacterio 99.9 3.6E-27 7.9E-32 200.6 11.5 142 15-157 472-670 (709)
236 PRK14243 phosphate transporter 99.9 5.9E-27 1.3E-31 179.9 11.5 144 11-157 7-212 (264)
237 cd03300 ABC_PotA_N PotA is an 99.9 6.6E-27 1.4E-31 176.4 11.6 137 17-157 3-193 (232)
238 PRK14256 phosphate ABC transpo 99.9 6.8E-27 1.5E-31 178.3 11.5 140 15-157 5-209 (252)
239 TIGR02770 nickel_nikD nickel i 99.9 3.9E-27 8.4E-32 177.5 10.0 126 32-157 1-188 (230)
240 cd03251 ABCC_MsbA MsbA is an e 99.9 9.7E-27 2.1E-31 175.5 12.2 139 17-157 3-199 (234)
241 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 4.5E-27 9.7E-32 201.8 11.6 143 14-157 477-674 (710)
242 PRK14236 phosphate transporter 99.9 8E-27 1.7E-31 179.9 11.8 143 12-157 23-229 (272)
243 PRK13545 tagH teichoic acids e 99.9 5.9E-27 1.3E-31 192.5 11.7 144 12-157 19-205 (549)
244 PRK14261 phosphate ABC transpo 99.9 7.2E-27 1.6E-31 178.2 11.4 143 12-157 4-210 (253)
245 COG4619 ABC-type uncharacteriz 99.9 3.8E-27 8.1E-32 167.1 9.0 135 23-157 9-196 (223)
246 TIGR03415 ABC_choXWV_ATP choli 99.9 6.3E-27 1.4E-31 187.5 11.1 127 30-157 37-227 (382)
247 PRK10982 galactose/methyl gala 99.9 7.1E-27 1.5E-31 193.2 11.7 133 22-157 5-196 (491)
248 PRK14260 phosphate ABC transpo 99.9 7.2E-27 1.6E-31 178.9 11.0 141 14-157 7-211 (259)
249 PRK14257 phosphate ABC transpo 99.9 1.2E-26 2.5E-31 183.2 12.4 144 13-157 79-286 (329)
250 PRK14253 phosphate ABC transpo 99.9 6.7E-27 1.5E-31 178.0 10.7 141 14-157 3-206 (249)
251 PRK14246 phosphate ABC transpo 99.9 1.2E-26 2.6E-31 177.6 11.8 144 11-157 7-214 (257)
252 TIGR00968 3a0106s01 sulfate AB 99.9 1.2E-26 2.5E-31 175.6 11.4 137 17-157 3-193 (237)
253 PRK14272 phosphate ABC transpo 99.9 8.1E-27 1.8E-31 177.7 10.5 141 14-157 4-209 (252)
254 cd03289 ABCC_CFTR2 The CFTR su 99.9 9.9E-27 2.1E-31 179.6 11.0 140 16-157 4-199 (275)
255 COG1137 YhbG ABC-type (unclass 99.9 5.2E-28 1.1E-32 175.5 3.6 139 15-157 5-201 (243)
256 PRK14249 phosphate ABC transpo 99.9 1.2E-26 2.5E-31 176.9 11.3 142 13-157 3-208 (251)
257 cd03216 ABC_Carb_Monos_I This 99.9 3.6E-27 7.9E-32 169.2 7.9 125 17-156 3-143 (163)
258 PRK14258 phosphate ABC transpo 99.9 1.5E-26 3.3E-31 177.3 11.8 141 14-157 7-213 (261)
259 TIGR01184 ntrCD nitrate transp 99.9 7.1E-27 1.5E-31 176.2 9.8 124 33-157 1-177 (230)
260 cd03215 ABC_Carb_Monos_II This 99.9 8.6E-27 1.9E-31 169.9 9.9 123 13-157 3-166 (182)
261 cd03234 ABCG_White The White s 99.9 2.9E-26 6.3E-31 172.3 12.9 139 15-155 4-203 (226)
262 cd03254 ABCC_Glucan_exporter_l 99.9 1.2E-26 2.6E-31 174.4 10.6 139 16-157 4-200 (229)
263 cd03297 ABC_ModC_molybdenum_tr 99.9 1.3E-26 2.9E-31 172.7 10.6 132 19-157 5-194 (214)
264 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.2E-26 2.7E-31 163.3 9.8 113 18-157 4-129 (144)
265 PRK14238 phosphate transporter 99.9 1.6E-26 3.5E-31 178.1 11.0 142 12-157 22-228 (271)
266 cd03290 ABCC_SUR1_N The SUR do 99.9 3.4E-26 7.3E-31 171.0 12.4 138 18-157 4-204 (218)
267 cd03246 ABCC_Protease_Secretio 99.9 2E-26 4.3E-31 166.8 10.8 135 17-157 3-158 (173)
268 cd03232 ABC_PDR_domain2 The pl 99.9 4.5E-26 9.7E-31 167.5 12.8 129 15-156 4-169 (192)
269 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 2.9E-26 6.2E-31 173.4 11.9 139 17-157 3-200 (238)
270 KOG0057 Mitochondrial Fe/S clu 99.9 1.7E-26 3.8E-31 187.5 11.3 142 14-157 351-548 (591)
271 PRK11160 cysteine/glutathione 99.9 2.6E-26 5.7E-31 193.0 12.8 143 14-157 338-536 (574)
272 COG4988 CydD ABC-type transpor 99.9 2.2E-26 4.9E-31 188.3 11.9 137 19-157 325-517 (559)
273 PRK11176 lipid transporter ATP 99.9 2.1E-26 4.6E-31 193.6 12.1 142 15-157 342-541 (582)
274 PRK14244 phosphate ABC transpo 99.9 2.8E-26 6E-31 174.8 11.4 138 17-157 8-210 (251)
275 TIGR00954 3a01203 Peroxysomal 99.9 2.3E-26 5E-31 195.8 12.2 141 14-157 451-641 (659)
276 TIGR01257 rim_protein retinal- 99.9 2.5E-26 5.3E-31 210.9 12.9 142 14-157 928-1122(2272)
277 TIGR02857 CydD thiol reductant 99.9 1.8E-26 3.9E-31 192.2 11.0 142 14-156 320-518 (529)
278 PRK14252 phosphate ABC transpo 99.9 4.3E-26 9.3E-31 175.1 12.2 143 12-157 14-222 (265)
279 cd03213 ABCG_EPDR ABCG transpo 99.9 7.5E-26 1.6E-30 166.6 12.6 129 15-156 4-172 (194)
280 PRK10982 galactose/methyl gala 99.9 2.4E-26 5.2E-31 190.0 11.1 140 13-157 249-453 (491)
281 cd03228 ABCC_MRP_Like The MRP 99.9 5.6E-26 1.2E-30 164.1 11.6 135 17-157 3-157 (171)
282 cd03369 ABCC_NFT1 Domain 2 of 99.9 9.8E-26 2.1E-30 167.3 13.1 137 14-157 6-186 (207)
283 cd03230 ABC_DR_subfamily_A Thi 99.9 3.3E-26 7.3E-31 165.6 10.3 131 18-157 4-157 (173)
284 TIGR03375 type_I_sec_LssB type 99.9 3.2E-26 6.8E-31 196.1 11.2 142 15-157 464-662 (694)
285 COG0410 LivF ABC-type branched 99.9 2.8E-26 6.1E-31 169.6 9.3 142 13-157 2-199 (237)
286 PRK14263 phosphate ABC transpo 99.9 8.3E-26 1.8E-30 173.3 12.2 138 18-157 11-210 (261)
287 TIGR02203 MsbA_lipidA lipid A 99.9 4.3E-26 9.3E-31 191.3 11.2 142 15-157 331-530 (571)
288 KOG0058 Peptide exporter, ABC 99.9 5.1E-26 1.1E-30 189.7 11.3 142 14-157 465-665 (716)
289 cd03253 ABCC_ATM1_transporter 99.9 1.2E-25 2.6E-30 169.8 12.1 138 17-157 3-198 (236)
290 PRK11288 araG L-arabinose tran 99.9 4.6E-26 1E-30 188.8 10.7 127 31-157 267-458 (501)
291 PRK13546 teichoic acids export 99.9 8.6E-26 1.9E-30 173.5 11.4 127 30-157 37-205 (264)
292 PRK11174 cysteine/glutathione 99.9 8E-26 1.7E-30 190.4 12.2 139 15-156 350-545 (588)
293 COG4161 ArtP ABC-type arginine 99.9 8.8E-26 1.9E-30 159.6 10.3 133 22-157 9-203 (242)
294 cd03217 ABC_FeS_Assembly ABC-t 99.9 6.2E-26 1.3E-30 167.7 10.0 126 17-157 3-166 (200)
295 TIGR01257 rim_protein retinal- 99.9 5.1E-26 1.1E-30 208.8 11.5 142 14-157 1937-2132(2272)
296 COG1129 MglA ABC-type sugar tr 99.9 7.7E-26 1.7E-30 184.3 11.1 142 12-157 6-207 (500)
297 cd03229 ABC_Class3 This class 99.9 6.2E-26 1.4E-30 164.8 9.5 136 18-157 4-163 (178)
298 PRK14266 phosphate ABC transpo 99.9 1.1E-25 2.3E-30 171.5 11.0 140 15-157 4-207 (250)
299 PRK15439 autoinducer 2 ABC tra 99.9 9.2E-26 2E-30 187.4 11.3 125 32-157 278-465 (510)
300 PRK03695 vitamin B12-transport 99.9 1E-25 2.2E-30 171.6 10.6 125 32-157 11-195 (248)
301 PRK10790 putative multidrug tr 99.9 1.9E-25 4.2E-30 188.3 12.9 140 15-156 341-536 (592)
302 PRK13409 putative ATPase RIL; 99.9 1.1E-25 2.3E-30 189.4 11.3 137 18-157 76-273 (590)
303 cd03236 ABC_RNaseL_inhibitor_d 99.9 1.1E-25 2.5E-30 172.1 10.4 133 22-157 7-201 (255)
304 COG4107 PhnK ABC-type phosphon 99.9 1.3E-25 2.9E-30 160.4 9.9 143 11-156 3-213 (258)
305 PRK10762 D-ribose transporter 99.9 1.2E-25 2.7E-30 186.2 11.1 125 32-157 267-457 (501)
306 TIGR00958 3a01208 Conjugate Tr 99.9 1.4E-25 3.1E-30 192.5 11.6 142 14-156 478-675 (711)
307 cd03233 ABC_PDR_domain1 The pl 99.9 4.4E-25 9.6E-30 163.4 12.6 132 16-154 5-178 (202)
308 cd03288 ABCC_SUR2 The SUR doma 99.9 4.2E-25 9E-30 169.0 12.4 143 13-157 18-217 (257)
309 TIGR01842 type_I_sec_PrtD type 99.9 3.4E-25 7.5E-30 185.2 12.9 141 14-156 316-515 (544)
310 PRK13657 cyclic beta-1,2-gluca 99.9 2E-25 4.4E-30 188.0 11.5 139 15-156 335-531 (588)
311 TIGR01193 bacteriocin_ABC ABC- 99.9 2.4E-25 5.2E-30 191.1 11.6 140 15-157 474-671 (708)
312 TIGR02204 MsbA_rel ABC transpo 99.9 5.2E-25 1.1E-29 185.0 13.1 142 15-157 338-537 (576)
313 PRK10789 putative multidrug tr 99.9 8E-25 1.7E-29 183.9 14.0 141 15-157 314-512 (569)
314 cd03222 ABC_RNaseL_inhibitor T 99.9 1.7E-25 3.8E-30 162.4 8.7 111 22-157 7-134 (177)
315 TIGR01194 cyc_pep_trnsptr cycl 99.9 5.4E-25 1.2E-29 184.4 12.9 141 15-156 338-532 (555)
316 COG4172 ABC-type uncharacteriz 99.9 4.9E-25 1.1E-29 174.1 11.4 144 13-157 275-489 (534)
317 PRK10522 multidrug transporter 99.9 8.2E-25 1.8E-29 183.0 13.2 141 14-156 322-511 (547)
318 COG4172 ABC-type uncharacteriz 99.9 4.8E-25 1E-29 174.2 10.5 145 12-157 4-220 (534)
319 cd03291 ABCC_CFTR1 The CFTR su 99.9 5.6E-25 1.2E-29 170.4 10.7 140 13-157 38-221 (282)
320 TIGR01846 type_I_sec_HlyB type 99.9 4.5E-25 9.8E-30 189.0 11.2 141 15-157 456-654 (694)
321 COG4152 ABC-type uncharacteriz 99.9 3.6E-25 7.9E-30 165.0 9.2 140 14-157 2-192 (300)
322 TIGR01192 chvA glucan exporter 99.9 1.1E-24 2.3E-29 183.7 12.1 140 15-157 335-532 (585)
323 COG4674 Uncharacterized ABC-ty 99.9 1.1E-25 2.5E-30 162.9 5.3 142 13-158 4-209 (249)
324 KOG0927 Predicted transporter 99.9 2.1E-25 4.6E-30 180.9 7.0 146 11-158 386-569 (614)
325 COG4133 CcmA ABC-type transpor 99.9 2.9E-24 6.3E-29 154.5 12.0 131 24-155 9-190 (209)
326 PRK15177 Vi polysaccharide exp 99.9 6.1E-25 1.3E-29 164.0 8.9 125 32-157 2-165 (213)
327 KOG0066 eIF2-interacting prote 99.9 6.8E-25 1.5E-29 175.3 9.3 154 3-158 575-764 (807)
328 COG4586 ABC-type uncharacteriz 99.9 8.8E-25 1.9E-29 165.1 9.1 127 30-157 37-219 (325)
329 PTZ00265 multidrug resistance 99.9 1.6E-24 3.6E-29 196.5 12.4 141 15-156 1166-1420(1466)
330 PLN03211 ABC transporter G-25; 99.9 3E-24 6.4E-29 182.7 13.1 127 30-156 81-267 (659)
331 TIGR03771 anch_rpt_ABC anchore 99.9 1.5E-24 3.2E-29 162.9 9.8 119 38-157 1-175 (223)
332 PLN03232 ABC transporter C fam 99.9 1.5E-24 3.2E-29 197.7 11.7 143 14-157 1234-1432(1495)
333 COG1132 MdlB ABC-type multidru 99.9 2.7E-24 5.9E-29 180.5 12.1 139 15-156 329-525 (567)
334 cd03270 ABC_UvrA_I The excisio 99.9 3.3E-24 7.1E-29 161.4 10.9 129 29-157 7-201 (226)
335 PRK10535 macrolide transporter 99.9 2.7E-24 5.8E-29 183.0 11.6 143 13-157 3-206 (648)
336 COG4618 ArpD ABC-type protease 99.9 2.2E-24 4.8E-29 174.1 10.3 141 14-156 334-533 (580)
337 PLN03130 ABC transporter C fam 99.9 3.1E-24 6.8E-29 196.2 11.8 143 14-157 1237-1435(1622)
338 PTZ00265 multidrug resistance 99.9 2.6E-24 5.6E-29 195.3 11.1 142 15-157 383-642 (1466)
339 COG0396 sufC Cysteine desulfur 99.9 3.1E-24 6.7E-29 158.6 9.1 141 14-156 3-205 (251)
340 PTZ00243 ABC transporter; Prov 99.9 4.4E-24 9.6E-29 194.8 11.7 142 14-156 1308-1506(1560)
341 COG4136 ABC-type uncharacteriz 99.9 9.1E-24 2E-28 147.6 10.2 139 15-157 3-197 (213)
342 COG3845 ABC-type uncharacteriz 99.9 3.4E-24 7.3E-29 172.5 9.1 140 14-157 4-202 (501)
343 KOG0055 Multidrug/pheromone ex 99.9 4.7E-24 1E-28 186.5 9.9 142 14-157 350-550 (1228)
344 TIGR00957 MRP_assoc_pro multi 99.9 6.9E-24 1.5E-28 193.5 11.1 143 14-157 1284-1482(1522)
345 TIGR01271 CFTR_protein cystic 99.9 2.3E-23 5E-28 189.7 12.4 142 14-156 1217-1413(1490)
346 cd00267 ABC_ATPase ABC (ATP-bi 99.9 9E-24 2E-28 150.5 7.7 122 21-157 5-142 (157)
347 PLN03232 ABC transporter C fam 99.9 2.9E-23 6.3E-28 189.2 11.7 143 14-157 614-802 (1495)
348 TIGR00957 MRP_assoc_pro multi 99.9 4E-23 8.6E-28 188.6 11.8 143 14-157 636-824 (1522)
349 KOG0055 Multidrug/pheromone ex 99.9 4.5E-23 9.7E-28 180.4 11.6 140 15-156 988-1186(1228)
350 COG4148 ModC ABC-type molybdat 99.9 9.7E-24 2.1E-28 160.1 6.0 122 35-157 16-191 (352)
351 PLN03130 ABC transporter C fam 99.9 4.6E-23 9.9E-28 188.6 11.1 143 14-157 614-802 (1622)
352 TIGR00956 3a01205 Pleiotropic 99.9 1.6E-22 3.4E-27 183.3 14.1 140 15-156 760-963 (1394)
353 cd03278 ABC_SMC_barmotin Barmo 99.9 5.2E-23 1.1E-27 151.9 9.0 119 34-157 14-178 (197)
354 TIGR00955 3a01204 The Eye Pigm 99.9 9E-23 2E-27 172.9 11.5 127 29-156 37-227 (617)
355 COG1134 TagH ABC-type polysacc 99.9 4.6E-23 9.9E-28 153.8 8.4 128 29-157 39-209 (249)
356 COG4778 PhnL ABC-type phosphon 99.9 2.1E-23 4.5E-28 148.4 6.2 127 30-156 24-213 (235)
357 COG1101 PhnK ABC-type uncharac 99.9 5.7E-23 1.2E-27 150.8 7.6 126 30-156 19-210 (263)
358 KOG0062 ATPase component of AB 99.9 3.8E-23 8.2E-28 167.1 7.3 135 22-158 87-258 (582)
359 KOG0056 Heavy metal exporter H 99.9 3.1E-22 6.7E-27 161.6 11.7 141 14-156 537-734 (790)
360 COG4167 SapF ABC-type antimicr 99.9 2.4E-22 5.2E-27 144.7 9.7 142 14-156 4-211 (267)
361 PLN03140 ABC transporter G fam 99.9 3.5E-22 7.7E-27 181.1 12.5 126 30-156 893-1080(1470)
362 PTZ00243 ABC transporter; Prov 99.9 1.6E-21 3.4E-26 178.2 12.1 127 30-157 673-844 (1560)
363 TIGR01187 potA spermidine/putr 99.9 8E-22 1.7E-26 155.6 8.6 109 48-157 1-163 (325)
364 KOG0062 ATPase component of AB 99.9 7.3E-22 1.6E-26 159.7 7.5 147 11-158 359-542 (582)
365 cd03271 ABC_UvrA_II The excisi 99.9 3.9E-21 8.5E-26 147.2 9.8 69 89-157 148-234 (261)
366 TIGR01271 CFTR_protein cystic 99.8 2E-21 4.3E-26 177.2 9.3 126 31-157 440-610 (1490)
367 TIGR00956 3a01205 Pleiotropic 99.8 8.8E-21 1.9E-25 172.0 13.2 126 30-155 74-270 (1394)
368 PF00005 ABC_tran: ABC transpo 99.8 3.8E-21 8.3E-26 133.6 8.5 97 33-129 1-127 (137)
369 PLN03140 ABC transporter G fam 99.8 2.8E-21 6E-26 175.4 9.4 126 30-155 178-397 (1470)
370 KOG0927 Predicted transporter 99.8 5.3E-21 1.2E-25 155.5 9.6 140 16-158 77-282 (614)
371 KOG0059 Lipid exporter ABCA1 a 99.8 3.7E-21 8E-26 168.3 8.6 135 21-157 570-760 (885)
372 KOG0054 Multidrug resistance-a 99.8 3E-20 6.6E-25 165.4 11.6 144 13-157 517-705 (1381)
373 KOG0061 Transporter, ABC super 99.8 1.2E-19 2.7E-24 153.3 13.2 127 29-156 42-231 (613)
374 COG4178 ABC-type uncharacteriz 99.8 5.6E-20 1.2E-24 152.8 10.6 141 13-156 391-575 (604)
375 cd03279 ABC_sbcCD SbcCD and ot 99.8 6.5E-20 1.4E-24 136.8 8.9 123 34-157 18-195 (213)
376 COG4615 PvdE ABC-type sideroph 99.8 2E-19 4.4E-24 142.2 11.9 140 15-156 323-510 (546)
377 COG4138 BtuD ABC-type cobalami 99.8 1.3E-20 2.8E-25 134.8 4.8 123 33-156 15-193 (248)
378 cd03272 ABC_SMC3_euk Eukaryoti 99.8 7.8E-19 1.7E-23 133.0 11.0 120 31-155 16-221 (243)
379 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.2E-18 2.7E-23 128.6 11.2 121 33-158 12-179 (198)
380 COG5265 ATM1 ABC-type transpor 99.8 4.7E-19 1E-23 140.8 9.2 140 16-157 264-460 (497)
381 COG1245 Predicted ATPase, RNas 99.8 3E-19 6.4E-24 143.3 8.0 133 23-157 343-518 (591)
382 KOG0060 Long-chain acyl-CoA tr 99.8 2.2E-18 4.8E-23 141.2 11.8 141 13-155 432-627 (659)
383 KOG0054 Multidrug resistance-a 99.8 2.1E-18 4.6E-23 153.8 11.5 142 14-157 1138-1336(1381)
384 KOG2355 Predicted ABC-type tra 99.8 1.4E-18 3E-23 127.3 8.0 137 14-155 13-208 (291)
385 cd03274 ABC_SMC4_euk Eukaryoti 99.8 7.5E-19 1.6E-23 131.1 5.7 121 30-156 17-191 (212)
386 COG1245 Predicted ATPase, RNas 99.7 4.5E-18 9.7E-23 136.5 8.2 131 22-156 81-274 (591)
387 cd03240 ABC_Rad50 The catalyti 99.7 8E-18 1.7E-22 124.9 8.7 119 36-157 16-185 (204)
388 TIGR00630 uvra excinuclease AB 99.7 1.2E-17 2.7E-22 145.8 11.2 68 90-157 808-893 (924)
389 KOG0066 eIF2-interacting prote 99.7 2.2E-18 4.7E-23 138.3 5.9 137 22-158 269-472 (807)
390 cd03273 ABC_SMC2_euk Eukaryoti 99.7 1.6E-17 3.4E-22 126.8 9.3 69 88-156 125-230 (251)
391 COG2401 ABC-type ATPase fused 99.7 1.6E-17 3.5E-22 132.3 9.5 127 31-157 397-570 (593)
392 PRK00349 uvrA excinuclease ABC 99.7 5.9E-17 1.3E-21 141.9 12.8 67 91-157 811-895 (943)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.7 3.8E-17 8.3E-22 124.4 8.6 69 88-156 112-220 (247)
394 PRK00635 excinuclease ABC subu 99.7 9.5E-17 2.1E-21 146.5 10.9 66 92-157 791-874 (1809)
395 KOG0064 Peroxisomal long-chain 99.7 1.5E-16 3.2E-21 129.8 10.6 133 22-156 488-670 (728)
396 COG4170 SapD ABC-type antimicr 99.7 2.1E-16 4.7E-21 116.4 6.5 131 26-156 16-220 (330)
397 cd03280 ABC_MutS2 MutS2 homolo 99.6 1.7E-16 3.6E-21 117.4 5.1 119 33-156 17-152 (200)
398 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.3E-15 2.8E-20 113.0 5.5 121 30-157 16-153 (204)
399 cd03277 ABC_SMC5_euk Eukaryoti 99.6 7.5E-15 1.6E-19 109.6 9.4 124 33-157 14-194 (213)
400 cd03239 ABC_SMC_head The struc 99.6 5.3E-15 1.2E-19 107.6 8.2 118 35-156 14-159 (178)
401 cd03227 ABC_Class2 ABC-type Cl 99.5 1.8E-14 3.8E-19 103.2 6.5 110 34-157 12-143 (162)
402 COG0178 UvrA Excinuclease ATPa 99.5 1.1E-13 2.4E-18 117.6 12.2 68 91-158 803-888 (935)
403 KOG0065 Pleiotropic drug resis 99.5 5.8E-15 1.3E-19 130.5 4.6 129 27-156 801-991 (1391)
404 cd03243 ABC_MutS_homologs The 99.5 7.9E-15 1.7E-19 108.5 4.7 119 33-157 19-153 (202)
405 cd03285 ABC_MSH2_euk MutS2 hom 99.5 2.3E-14 5E-19 107.6 6.5 116 31-155 18-153 (222)
406 PRK00635 excinuclease ABC subu 99.5 7.3E-14 1.6E-18 127.9 9.4 67 91-157 1680-1764(1809)
407 cd03241 ABC_RecN RecN ATPase i 99.5 2.8E-13 6.2E-18 104.8 10.6 48 109-156 169-234 (276)
408 COG1129 MglA ABC-type sugar tr 99.4 7.3E-13 1.6E-17 108.7 9.1 126 32-157 274-463 (500)
409 PF02463 SMC_N: RecF/RecN/SMC 99.4 1.8E-12 3.9E-17 96.8 10.4 61 88-155 121-199 (220)
410 COG3845 ABC-type uncharacteriz 99.4 4E-12 8.7E-17 103.2 10.5 144 12-157 255-465 (501)
411 TIGR01069 mutS2 MutS2 family p 99.3 1.5E-12 3.2E-17 112.9 5.9 117 35-156 313-446 (771)
412 cd03283 ABC_MutS-like MutS-lik 99.3 4.4E-12 9.6E-17 93.8 6.7 34 31-66 15-48 (199)
413 KOG0063 RNAse L inhibitor, ABC 99.3 6.7E-12 1.4E-16 100.8 5.4 131 23-155 343-517 (592)
414 cd00820 PEPCK_HprK Phosphoenol 99.2 6.4E-12 1.4E-16 83.8 3.9 34 31-64 3-36 (107)
415 cd03284 ABC_MutS1 MutS1 homolo 99.2 1.7E-11 3.7E-16 91.8 6.0 34 31-65 19-52 (216)
416 smart00534 MUTSac ATPase domai 99.2 3.4E-12 7.4E-17 93.3 1.9 106 45-156 1-123 (185)
417 cd03242 ABC_RecF RecF is a rec 99.2 1.5E-10 3.3E-15 89.3 10.1 47 108-155 181-248 (270)
418 KOG0063 RNAse L inhibitor, ABC 99.2 3.7E-11 8E-16 96.6 4.7 116 41-157 98-275 (592)
419 cd03287 ABC_MSH3_euk MutS3 hom 99.1 8.9E-11 1.9E-15 88.2 4.3 35 31-65 19-53 (222)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.1 5.6E-10 1.2E-14 83.4 8.1 31 35-65 19-51 (213)
421 PRK00409 recombination and DNA 99.0 1.6E-10 3.4E-15 100.6 3.7 117 35-156 318-451 (782)
422 PRK00064 recF recombination pr 99.0 3.3E-09 7.2E-14 85.1 10.9 48 109-156 272-340 (361)
423 PRK07721 fliI flagellum-specif 99.0 2.1E-09 4.6E-14 87.9 9.3 36 31-67 147-182 (438)
424 KOG0065 Pleiotropic drug resis 99.0 4.9E-10 1.1E-14 99.9 5.9 124 31-154 129-320 (1391)
425 TIGR03238 dnd_assoc_3 dnd syst 99.0 2.9E-10 6.3E-15 93.0 2.5 31 31-61 20-50 (504)
426 PRK00349 uvrA excinuclease ABC 98.9 1.6E-09 3.6E-14 95.6 6.7 65 93-157 472-553 (943)
427 TIGR00630 uvra excinuclease AB 98.9 2.9E-09 6.3E-14 93.9 7.6 65 93-157 470-551 (924)
428 PF13555 AAA_29: P-loop contai 98.9 1.9E-09 4E-14 64.9 3.8 33 33-65 12-45 (62)
429 cd03286 ABC_MSH6_euk MutS6 hom 98.8 3.8E-09 8.2E-14 79.2 4.2 35 31-65 18-52 (218)
430 TIGR02655 circ_KaiC circadian 98.8 1E-09 2.2E-14 91.2 1.0 116 39-156 17-168 (484)
431 cd01128 rho_factor Transcripti 98.8 1.4E-08 3E-13 77.6 6.6 32 35-66 8-39 (249)
432 COG3910 Predicted ATPase [Gene 98.7 1.2E-07 2.6E-12 69.1 9.7 49 108-156 127-189 (233)
433 PRK13695 putative NTPase; Prov 98.7 8.3E-09 1.8E-13 74.5 3.7 110 45-155 2-136 (174)
434 PRK08533 flagellar accessory p 98.7 2.4E-07 5.1E-12 70.0 10.2 28 39-66 20-48 (230)
435 TIGR01026 fliI_yscN ATPase Fli 98.7 1.2E-07 2.5E-12 77.9 8.9 36 31-67 152-187 (440)
436 PRK07196 fliI flagellum-specif 98.6 1E-07 2.2E-12 77.9 7.1 37 31-68 144-180 (434)
437 PRK06793 fliI flagellum-specif 98.6 1.8E-07 3.9E-12 76.4 7.7 100 22-126 137-237 (432)
438 TIGR00767 rho transcription te 98.6 9.9E-08 2.1E-12 77.0 5.6 50 15-66 131-191 (415)
439 TIGR02858 spore_III_AA stage I 98.5 6.3E-07 1.4E-11 69.2 8.7 25 44-68 112-136 (270)
440 cd01124 KaiC KaiC is a circadi 98.5 1E-06 2.2E-11 63.8 9.4 20 46-65 2-21 (187)
441 PF13476 AAA_23: AAA domain; P 98.5 8.8E-08 1.9E-12 69.7 3.5 31 33-64 10-40 (202)
442 PRK06995 flhF flagellar biosyn 98.5 1.1E-06 2.3E-11 72.9 9.6 36 32-67 245-280 (484)
443 cd01130 VirB11-like_ATPase Typ 98.5 5.8E-08 1.2E-12 70.9 1.3 35 33-67 15-49 (186)
444 PRK10078 ribose 1,5-bisphospho 98.5 1.2E-07 2.5E-12 69.3 2.9 25 43-67 2-26 (186)
445 TIGR00235 udk uridine kinase. 98.4 1.1E-07 2.3E-12 70.6 2.5 27 41-67 4-30 (207)
446 cd01136 ATPase_flagellum-secre 98.4 9.4E-07 2E-11 69.9 7.3 45 22-68 50-94 (326)
447 PRK09825 idnK D-gluconate kina 98.4 2E-07 4.2E-12 67.7 3.1 26 42-67 2-27 (176)
448 PRK06067 flagellar accessory p 98.4 7.2E-06 1.6E-10 61.8 11.6 113 39-156 21-166 (234)
449 PRK06002 fliI flagellum-specif 98.4 4.6E-07 1E-11 74.3 4.8 50 15-67 140-189 (450)
450 PRK08972 fliI flagellum-specif 98.4 1.5E-06 3.3E-11 71.1 7.5 35 32-67 152-186 (444)
451 PRK00300 gmk guanylate kinase; 98.3 3.4E-07 7.3E-12 67.5 3.1 27 41-67 3-29 (205)
452 PRK08149 ATP synthase SpaL; Va 98.3 4.9E-07 1.1E-11 73.8 4.1 36 31-67 140-175 (428)
453 TIGR03263 guanyl_kin guanylate 98.3 4.5E-07 9.8E-12 65.5 3.0 24 43-66 1-24 (180)
454 TIGR02322 phosphon_PhnN phosph 98.3 5.7E-07 1.2E-11 65.0 2.9 24 43-66 1-24 (179)
455 PRK05922 type III secretion sy 98.3 3.9E-06 8.4E-11 68.7 8.0 35 32-67 147-181 (434)
456 COG3950 Predicted ATP-binding 98.2 7.6E-07 1.6E-11 70.3 3.2 32 33-64 14-45 (440)
457 cd01120 RecA-like_NTPases RecA 98.2 1.2E-05 2.6E-10 56.2 9.1 23 45-67 1-23 (165)
458 TIGR03498 FliI_clade3 flagella 98.2 2.9E-06 6.3E-11 69.3 6.3 36 32-68 130-165 (418)
459 PRK07594 type III secretion sy 98.2 1.1E-06 2.3E-11 72.0 3.7 44 22-67 136-179 (433)
460 PRK14721 flhF flagellar biosyn 98.2 9.1E-07 2E-11 72.2 3.2 27 40-66 188-214 (420)
461 PLN03210 Resistant to P. syrin 98.2 8.4E-07 1.8E-11 80.7 3.3 31 36-66 200-230 (1153)
462 PRK05688 fliI flagellum-specif 98.2 1.2E-06 2.6E-11 71.9 3.8 36 31-67 157-192 (451)
463 PHA02562 46 endonuclease subun 98.2 3.6E-06 7.7E-11 71.0 6.8 51 107-157 465-539 (562)
464 TIGR03496 FliI_clade1 flagella 98.2 5.4E-06 1.2E-10 67.6 7.3 45 22-68 118-162 (411)
465 PRK14723 flhF flagellar biosyn 98.2 9.6E-07 2.1E-11 76.5 2.8 35 32-66 174-208 (767)
466 PRK06936 type III secretion sy 98.2 1.8E-06 4E-11 70.6 4.2 36 31-67 151-186 (439)
467 PRK14722 flhF flagellar biosyn 98.2 1.2E-06 2.6E-11 70.5 2.9 35 32-66 126-160 (374)
468 TIGR03497 FliI_clade2 flagella 98.2 7E-06 1.5E-10 67.0 7.3 36 31-67 126-161 (413)
469 PRK08472 fliI flagellum-specif 98.1 1.5E-06 3.2E-11 71.2 3.1 35 31-66 146-180 (434)
470 PRK09099 type III secretion sy 98.1 1.9E-06 4.1E-11 70.7 3.7 36 31-67 152-187 (441)
471 cd01125 repA Hexameric Replica 98.1 8.2E-06 1.8E-10 61.8 6.9 22 43-64 1-22 (239)
472 TIGR02546 III_secr_ATP type II 98.1 1.5E-06 3.3E-11 71.1 3.1 36 31-67 134-169 (422)
473 PRK09270 nucleoside triphospha 98.1 1.6E-06 3.4E-11 65.4 2.8 28 40-67 30-57 (229)
474 PLN02796 D-glycerate 3-kinase 98.1 5.2E-07 1.1E-11 71.7 0.1 37 31-67 80-124 (347)
475 TIGR02168 SMC_prok_B chromosom 98.1 1.8E-06 4E-11 77.9 3.6 28 36-64 17-44 (1179)
476 PRK05480 uridine/cytidine kina 98.1 1.7E-06 3.7E-11 64.1 2.8 27 41-67 4-30 (209)
477 PRK05399 DNA mismatch repair p 98.1 5E-06 1.1E-10 73.5 6.0 33 32-65 597-629 (854)
478 cd02025 PanK Pantothenate kina 98.1 1.4E-06 3.1E-11 65.4 2.2 23 45-67 1-23 (220)
479 PRK15494 era GTPase Era; Provi 98.1 2.4E-06 5.3E-11 68.1 3.4 49 15-65 19-74 (339)
480 PRK06315 type III secretion sy 98.1 2.7E-06 5.8E-11 69.8 3.3 36 31-67 153-188 (442)
481 cd02023 UMPK Uridine monophosp 98.1 2.1E-06 4.5E-11 63.1 2.3 23 45-67 1-23 (198)
482 PRK10246 exonuclease subunit S 98.1 3.2E-06 7E-11 76.2 3.8 31 35-65 19-52 (1047)
483 COG0178 UvrA Excinuclease ATPa 98.1 1.3E-05 2.8E-10 69.5 7.1 63 94-156 465-544 (935)
484 TIGR00554 panK_bact pantothena 98.0 2.7E-06 5.9E-11 66.3 2.7 25 42-66 61-85 (290)
485 PRK06820 type III secretion sy 98.0 4.3E-06 9.3E-11 68.6 4.0 36 31-67 152-187 (440)
486 TIGR00750 lao LAO/AO transport 98.0 2.2E-06 4.7E-11 67.2 2.2 35 31-65 22-56 (300)
487 TIGR00611 recf recF protein. A 98.0 4.9E-06 1.1E-10 67.0 4.1 49 109-157 274-343 (365)
488 TIGR00150 HI0065_YjeE ATPase, 98.0 3.9E-06 8.4E-11 58.2 3.0 27 39-65 18-44 (133)
489 TIGR00634 recN DNA repair prot 98.0 4.8E-06 1E-10 70.6 4.2 48 109-156 439-504 (563)
490 TIGR02788 VirB11 P-type DNA tr 98.0 1.9E-06 4E-11 67.8 1.6 33 36-68 137-169 (308)
491 cd00879 Sar1 Sar1 subfamily. 98.0 1.8E-06 3.8E-11 62.7 1.4 33 32-65 9-41 (190)
492 PRK10869 recombination and rep 98.0 5.7E-06 1.2E-10 70.0 4.6 47 110-156 430-494 (553)
493 PRK09183 transposase/IS protei 98.0 2.8E-06 6.1E-11 65.3 2.5 34 32-66 92-125 (259)
494 PRK13477 bifunctional pantoate 98.0 6.3E-06 1.4E-10 68.9 4.6 42 22-66 266-307 (512)
495 PF13207 AAA_17: AAA domain; P 98.0 3.4E-06 7.4E-11 56.8 2.4 22 45-66 1-22 (121)
496 PRK02224 chromosome segregatio 98.0 4.4E-06 9.6E-11 74.0 3.5 30 34-64 15-44 (880)
497 PF03193 DUF258: Protein of un 98.0 5E-06 1.1E-10 59.5 3.1 33 33-66 26-58 (161)
498 PRK07960 fliI flagellum-specif 98.0 4.6E-06 1E-10 68.4 3.3 36 32-68 165-200 (455)
499 COG0419 SbcC ATPase involved i 98.0 4.4E-06 9.5E-11 74.4 3.4 30 35-64 16-46 (908)
500 smart00382 AAA ATPases associa 98.0 5.3E-06 1.2E-10 55.9 3.1 27 42-68 1-27 (148)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=222.63 Aligned_cols=141 Identities=25% Similarity=0.368 Sum_probs=109.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~ 72 (158)
|+++.++ +++|+.. .+|++||++|.+||+++|+||||||||||+|+|.+.... +..
T Consensus 2 mi~i~~l-~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNL-SKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEee-eEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5566666 8888754 589999999999999999999999999999999853211 112
Q ss_pred eeccccch--hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHL--EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~--~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+|.++|.+ ++.++ .++.+.++|+++|+.+..+. ++.+|||||||||+||||+..
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~-yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADA-YPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhh-CccccCcHHHHHHHHHHHHcCCCCE
Confidence 44444432 11111 23667889999999988775 558999999999999999865
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
.|||+...++++.++++ +.|+|+|||++.|+
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FA 199 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFA 199 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHH
Confidence 69999998888777654 57999999999763
No 2
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-36 Score=227.06 Aligned_cols=141 Identities=29% Similarity=0.475 Sum_probs=113.8
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-----------------cceeeec
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-----------------QKLRIGR 75 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-----------------~~~~~~~ 75 (158)
+++++.++ +++|.+. ++|+||||++++|++++|+||||||||||+|++.+... ...++||
T Consensus 3 ~~i~v~nl-~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENL-TVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeee-EEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 45666666 9999865 48999999999999999999999999999999997321 1246888
Q ss_pred cccchh----------hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 76 HSRHLE----------DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 76 ~~~~~~----------~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++|... +.. ...+.+.++|+.+|+.+..+ +++.+|||||+|||.||||++.
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-r~i~~LSGGQ~QRV~lARAL~~~p 158 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-RQIGELSGGQKQRVLLARALAQNP 158 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-CcccccCcHHHHHHHHHHHhccCC
Confidence 887421 111 01377899999999997665 7889999999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
++|+.++..+.++|+++ ++||++||||++.
T Consensus 159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~ 201 (254)
T COG1121 159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL 201 (254)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence 68999998888888655 5799999999864
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-36 Score=223.57 Aligned_cols=139 Identities=29% Similarity=0.331 Sum_probs=105.0
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRH 79 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~ 79 (158)
+.+.++ ++.|+. ..+|+|+||+|.+||+++|+||||||||||+|+++|.... ...+++.+|.
T Consensus 4 l~i~~v-~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 4 LEIEGV-SKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred EEEEee-EEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 444444 888876 4689999999999999999999999999999999975321 1123444443
Q ss_pred h--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 80 L--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 80 ~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
. .+..+ ..+++.++++.+|+.+..+. ++++|||||||||+||||++.
T Consensus 81 ~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~-~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 81 DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDK-YPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhc-CccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1 11111 13568889999999987774 569999999999999999875
Q ss_pred CCCHHHHHHHHH----HHhhcCCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAV----TLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~----~l~~~~~tvi~vtHd~~~ 157 (158)
.||..++..+.+ +.++.+.||++||||.++
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E 193 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDE 193 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 588877665554 445667899999999865
No 4
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.9e-35 Score=219.00 Aligned_cols=142 Identities=32% Similarity=0.407 Sum_probs=107.7
Q ss_pred hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------------
Q 044538 15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------------ 68 (158)
Q Consensus 15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------------ 68 (158)
+++.++ .+.|..+. ..+|+++||+|++||+++|+||||||||||++++.+...
T Consensus 2 i~~~~v-~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 2 IELKNV-SKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred cEEeee-EEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 344555 77775432 368999999999999999999999999999999985321
Q ss_pred cceeeeccccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 69 QKLRIGRHSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 69 ~~~~~~~~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
.+..+|+.+|.+ .+.++ ..+.+..+++.+|+.+...++++.+|||||||||+||||++.
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 122356555542 11111 234566788899998766656779999999999999999875
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||.++...+++.+.+. +.|+|+||||.+.
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~l 205 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPEL 205 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 69999999999988765 4699999999753
No 5
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-35 Score=212.21 Aligned_cols=141 Identities=26% Similarity=0.383 Sum_probs=111.3
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------c
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------K 70 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~ 70 (158)
|+.+.++ +++|+++ .++|+||||+|++||++.|+||||||||||+|+|...... +
T Consensus 1 mI~f~~V-~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENV-SKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred Ceeehhh-hhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 4566777 9999988 5699999999999999999999999999999999853221 1
Q ss_pred eeeeccccchh--------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 71 LRIGRHSRHLE--------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 71 ~~~~~~~~~~~--------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
..+|.++|++. ++. ...+++.++|+++|+.+..+. -+.+|||||||||+||||+..
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~-lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhc-CccccCchHHHHHHHHHHHccCCC
Confidence 23555555421 111 124778899999999887764 458999999999999999765
Q ss_pred ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+....++++++.++ +.|||+.|||.++
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l 199 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL 199 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH
Confidence 79999988888887665 5799999999754
No 6
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-35 Score=218.87 Aligned_cols=141 Identities=23% Similarity=0.314 Sum_probs=107.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------------------cceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------------------QKLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------------------~~~~~ 73 (158)
|+++.++ ++.|.+. .+++|+||+|++||+++++|||||||||++++|..... -+..+
T Consensus 1 MI~~~nv-sk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENV-SKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred Cceeeee-ehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 4566676 8888853 58999999999999999999999999999999984211 12345
Q ss_pred eccccc--hhhHh------------------hHHHHHHHHHHHcCCCC-CCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 74 GRHSRH--LEDLL------------------TMEEAVHAKLRKFGLPG-HNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 74 ~~~~~~--~~~~~------------------~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
||.-|. +++.+ ...+++.++++.+|+++ ...++++++|||||+|||.+|||+..
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 554432 11111 23467889999999986 23446679999999999999998765
Q ss_pred -------CCCHHHHHHHHHHHh----hcCCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~~ 157 (158)
.|||-++..+.+.+. +++.||||||||+++
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidE 198 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDE 198 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 599988887776664 456899999999875
No 7
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=220.81 Aligned_cols=142 Identities=27% Similarity=0.394 Sum_probs=110.2
Q ss_pred hhhhheeeeEEcCCC---CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh----------------------
Q 044538 14 MLQLIEVISFSYPNL---QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------------------- 68 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~---~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------------------- 68 (158)
|+++.++ ++.|... ...+++||||+|++||++||+|.||||||||+|++.....
T Consensus 1 mI~l~~v-sK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr 79 (339)
T COG1135 1 MIELENV-SKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR 79 (339)
T ss_pred CeEEEee-eeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH
Confidence 4556666 8888752 2468999999999999999999999999999999984321
Q ss_pred -cceeeeccccchh--------hH------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 69 -QKLRIGRHSRHLE--------DL------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 69 -~~~~~~~~~~~~~--------~~------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
.+..+|..+|++. ++ -...+++.++++.+|++++.+ +++.+|||||||||+||||+..
T Consensus 80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~-~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc-cCchhcCcchhhHHHHHHHHhc
Confidence 1223555555431 11 112467889999999998766 4568999999999999999875
Q ss_pred ------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~ 157 (158)
+|||+..+.+++.|++ ++.||++|||.|+.
T Consensus 159 ~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V 204 (339)
T COG1135 159 NPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV 204 (339)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 6999999999888865 46799999999874
No 8
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-34 Score=212.56 Aligned_cols=144 Identities=26% Similarity=0.291 Sum_probs=109.6
Q ss_pred hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538 13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------- 70 (158)
+++.+.|+ ++.|+.+. .+++++|||+|.+||++||+|+||||||||.+++++.....
T Consensus 2 ~~l~v~nl-~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 2 TLLSVRNL-SIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred ceEEEece-EEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 35666666 99997653 14899999999999999999999999999999999753211
Q ss_pred -eeeeccccchh----hHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 71 -LRIGRHSRHLE----DLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 71 -~~~~~~~~~~~----~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
..+...+|+.. +..+ .++++.++++.+|+++...++++++|||||+||+|||||+..
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~P 160 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEP 160 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCC
Confidence 11222233321 1111 124578899999999877777789999999999999999764
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.||...+..+++.+.+. +.|+||||||+..
T Consensus 161 klLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~ 204 (252)
T COG1124 161 KLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL 204 (252)
T ss_pred CEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH
Confidence 69999999999888654 4699999999753
No 9
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.1e-34 Score=214.69 Aligned_cols=140 Identities=30% Similarity=0.410 Sum_probs=108.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
++.+.++ ++.|++ +++++|+||++++|++++|+||||||||||+|+|++.... ...+
T Consensus 2 ~L~~~~l-s~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENL-SFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEE-EEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3455555 888874 4689999999999999999999999999999999853211 1124
Q ss_pred eccccch----------------------hhHhh--HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL----------------------EDLLT--MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~----------------------~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. +...+ ..+.+.++++.+++.+... +++.+|||||||||.||+|+..
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-RPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-CcccccChhHHHHHHHHHHHhcCC
Confidence 4444321 11111 2246888999999998766 6789999999999999998765
Q ss_pred ----------CCCHHHHHHHHHHHhhcC----CeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEFA----GGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~~----~tvi~vtHd~~~ 157 (158)
+||...+.++++.++++. .|+|+|+||+++
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~ 201 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL 201 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 699999999999887654 799999999875
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-33 Score=219.06 Aligned_cols=141 Identities=26% Similarity=0.354 Sum_probs=106.2
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIG 74 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~ 74 (158)
+.+++.++ ++.|+. ..+++|+||+|++||+++|+|||||||||+||+|+|.... +..+|
T Consensus 4 ~~l~i~~v-~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNV-SKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEee-eeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 45666666 999983 4689999999999999999999999999999999975321 12244
Q ss_pred ccccch--hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 75 RHSRHL--EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 75 ~~~~~~--~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
.++|.+ ++.++ ..+++.++++.+++.+... +++++|||||||||++|||+..
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~-R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD-RKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh-hChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 444432 11111 2357889999999998776 5669999999999999998754
Q ss_pred ------CCCHHHHHHHHHH----HhhcCCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVT----LDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~----l~~~~~tvi~vtHd~~~ 157 (158)
+||..-+..+... .++.+.|.|+||||.++
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeE 199 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEE 199 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 6887666555544 45567899999999764
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.2e-33 Score=205.03 Aligned_cols=142 Identities=27% Similarity=0.369 Sum_probs=109.6
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-----------------------c
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-----------------------Q 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-----------------------~ 69 (158)
.|+++.++ +++|+++. .+|++|||+|++||+++|+||||||||||+|++.+... .
T Consensus 2 ~~i~~~nl-~k~yp~~~-~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNL-SKTYPGGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeee-eeecCCCc-eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 35677776 99997654 69999999999999999999999999999999985321 1
Q ss_pred ceeeeccccchh--------------------------hHhh--HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Q 044538 70 KLRIGRHSRHLE--------------------------DLLT--MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 70 ~~~~~~~~~~~~--------------------------~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 121 (158)
+..+|+.+|.+. ..++ ....+.++|+++|+.+... ++.++|||||+|||+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-qra~~LSGGQQQRVaI 158 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-QRASTLSGGQQQRVAI 158 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-HHhccCCcchhHHHHH
Confidence 122444443320 0011 1245678899999988766 5679999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||+++. .|||.+...+++.|++. +.|+|+..|++++
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl 210 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL 210 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH
Confidence 999875 59999999999988764 5799999999864
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.97 E-value=5.5e-32 Score=211.93 Aligned_cols=138 Identities=25% Similarity=0.358 Sum_probs=105.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+++.++ ++.|++.. +++++||+|++||+++|+||||||||||||+|+|.... ...++++
T Consensus 4 i~l~~v-~K~yg~~~--~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 4 LELKNV-RKSFGSFE--VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EEEeee-EEEcCCce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 455565 88898643 79999999999999999999999999999999975421 1224444
Q ss_pred ccch--hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 77 SRHL--EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 77 ~~~~--~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
+|.+ ++.+ ..+++++++.+.+++.+..++ ++.+|||||||||++|||+..
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r-~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNR-KPLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhc-CcccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 4432 1111 124678899999999988774 569999999999999999765
Q ss_pred ---CCCHHHHHHHHHHHhh----cCCeEEEEeecCC
Q 044538 128 ---HLDTQSIVAVAVTLDE----FAGGVVLVSHDSR 156 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~ 156 (158)
+||...+..+...+++ ++.|+|+||||..
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH
Confidence 6888777766665544 5679999999964
No 13
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.9e-32 Score=204.17 Aligned_cols=141 Identities=33% Similarity=0.475 Sum_probs=110.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~ 72 (158)
++.+.++ +++|++. ..+++++||++++|++++|+|+||||||||++++++...+ +..
T Consensus 3 ~i~~~~l-~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENL-SFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEE-EEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 4455555 9999876 5689999999999999999999999999999999864221 112
Q ss_pred eeccccchhhHh---------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHLEDLL---------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+|+.+|+....+ ...+++.++++.+++....+ +++.+|||||||||+||.++..
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~-r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLD-RPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhcc-CCccccCCcceeeHHhhHHHHcCCCE
Confidence 455444321111 13467889999999988755 6779999999999999877654
Q ss_pred --------CCCHHHHHHHHHHHhhcC----CeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEFA----GGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~~----~tvi~vtHd~~~ 157 (158)
+||+.+..++++.++++. .|+|++|||+++
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 699999999999987763 599999999875
No 14
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.2e-32 Score=196.92 Aligned_cols=141 Identities=23% Similarity=0.355 Sum_probs=102.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------------ 68 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------------ 68 (158)
+.+.+.++ ++.|+.. .+|++||++|++++++|++||||||||||+|++.....
T Consensus 6 ~~~~~~~l-~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDL-NLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecce-eEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 34555565 8999854 58999999999999999999999999999999972100
Q ss_pred ---cceeeeccccch-------hhH------------hhHHHHHHHHHHHcCCCCCCC---CCCCCCCChHHHHHHHHHH
Q 044538 69 ---QKLRIGRHSRHL-------EDL------------LTMEEAVHAKLRKFGLPGHNH---LTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 69 ---~~~~~~~~~~~~-------~~~------------~~~~~~~~~~l~~~~l~~~~~---~~~~~~LSgGqkqrv~ia~ 123 (158)
-+.++|.++|.. .++ ...++.++..|+...|.+... ++....||||||||+||||
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIAR 162 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHH
Confidence 011234433321 111 122456777777777654221 1345689999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 156 (158)
++.. .|||.+...+.+++.+++ -|||+|||+|.
T Consensus 163 alAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmq 209 (253)
T COG1117 163 ALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQ 209 (253)
T ss_pred HHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHH
Confidence 8764 699999999999888875 59999999974
No 15
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.97 E-value=9e-31 Score=195.38 Aligned_cols=141 Identities=29% Similarity=0.418 Sum_probs=105.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~ 71 (158)
+.+.++ +++|++...++++++||+|++|++++|+||||||||||+++|++.... +.
T Consensus 2 l~~~~l-~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQV-SKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEE-EEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 445555 888865333589999999999999999999999999999999864211 01
Q ss_pred eeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 72 RIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.+++.++.. .+.+. ..+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~l 159 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAH-ALPMQLSGGEQQRVAIARAIVHKPPL 159 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 133333221 11110 1245677899999976554 5678999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||+||||+++
T Consensus 160 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 160 LLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999988765 5799999999764
No 16
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.97 E-value=1e-30 Score=207.15 Aligned_cols=142 Identities=24% Similarity=0.347 Sum_probs=107.3
Q ss_pred hhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 14 MLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
|+.+.++ +++|+.. ..++|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 1 mI~~~~l-sk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~ 79 (343)
T TIGR02314 1 MIKLSNI-TKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTK 79 (343)
T ss_pred CEEEEEE-EEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3555566 8999632 23689999999999999999999999999999999853211
Q ss_pred -ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 70 -KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+..+++.+|.+ .+.. ...+++.++++.+|+.+..+ +++.+|||||||||+||+|++.
T Consensus 80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-~~~~~LSgGqkQRV~IARAL~~~ 158 (343)
T TIGR02314 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-SYPSNLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHhC
Confidence 11244444321 0111 01245678899999987655 5679999999999999999875
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+++.+++. +.|||+||||++.
T Consensus 159 P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~ 203 (343)
T TIGR02314 159 PKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDV 203 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999998888764 5799999999864
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=7.1e-31 Score=194.91 Aligned_cols=143 Identities=29% Similarity=0.378 Sum_probs=105.6
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
.+.+++.++ +++|++. .+++|+||+|++||+++|+||||||||||+|.|.+...+
T Consensus 6 ~~~I~vr~v-~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGV-TKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeee-eeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 456666665 8888654 589999999999999999999999999999999864321
Q ss_pred -ceeeeccccc--hhhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 70 -KLRIGRHSRH--LEDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 70 -~~~~~~~~~~--~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
+.++|..+|. ++..++ ..+.+..-++.+|+.....+..+++|||||++|++||||+..
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 1123433332 111111 234556678999998874445679999999999999999765
Q ss_pred ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+|||.+...+.++++++ +.|+++||||++.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s 208 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS 208 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH
Confidence 69998877777666544 5799999999864
No 18
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=8.4e-31 Score=200.34 Aligned_cols=133 Identities=26% Similarity=0.343 Sum_probs=101.4
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL 80 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~ 80 (158)
++.|+.. .+++|||++|+.||.++|+||||||||||+|+|+|...+ ...+|+.+|++
T Consensus 9 ~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y 86 (345)
T COG1118 9 KKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY 86 (345)
T ss_pred hhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence 6666654 478999999999999999999999999999999974321 12356555542
Q ss_pred h--hH--------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 81 E--DL--------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 81 ~--~~--------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
. +. .....++.++|+.+.++.... +++.+|||||||||++|||+..
T Consensus 87 ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf 165 (345)
T COG1118 87 ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-RYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165 (345)
T ss_pred hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-cCchhcChHHHHHHHHHHHhhcCCCeEeecCCc
Confidence 1 11 123467888999999998776 4568999999999999998764
Q ss_pred -CCCHHHHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTL----DEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l----~~~~~tvi~vtHd~~~ 157 (158)
.||...+.++...| .+++.|.|+||||.++
T Consensus 166 ~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ee 200 (345)
T COG1118 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE 200 (345)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHH
Confidence 58887766665555 4557899999999865
No 19
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.97 E-value=5.1e-30 Score=189.97 Aligned_cols=136 Identities=25% Similarity=0.382 Sum_probs=103.4
Q ss_pred eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------ceeeeccccch-
Q 044538 19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRIGRHSRHL- 80 (158)
Q Consensus 19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~~~~~~~~- 80 (158)
++ ++.|++. ..+|+++||++++|++++|+||||||||||+++|++.... ...+++.++..
T Consensus 4 ~l-~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 4 NI-SFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cE-EEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 44 8888652 3589999999999999999999999999999999964211 01244444431
Q ss_pred ---h-----hHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 81 ---E-----DLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 81 ---~-----~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
. +.+. ..+++.++++.+++.+..+ +++.+||||||||++||++++. +||+.
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 160 (205)
T cd03226 82 YQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKE-RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYK 160 (205)
T ss_pred hhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcC-CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHH
Confidence 0 1110 1135678899999987654 5679999999999999988775 69999
Q ss_pred HHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 133 SIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 133 ~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
++..+.+.++++ +.|+|++|||+++
T Consensus 161 ~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 161 NMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 999999988765 4799999999753
No 20
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5e-30 Score=193.51 Aligned_cols=143 Identities=25% Similarity=0.328 Sum_probs=107.5
Q ss_pred hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538 13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------- 69 (158)
|++.+.++ ++.|+... .++|+++||+|++||+++|+||||||||||+++|++....
T Consensus 4 ~~l~~~~l-~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 4 ILLQCDNL-CKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred ceEEEEeE-EEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 56777666 99997432 3589999999999999999999999999999999864210
Q ss_pred ---ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 ---KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 ---~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
+..+++.++.. .+.+ ...+++.++++.+|+.+... +++.+||||||||++||++++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrl~la~al~ 161 (233)
T PRK11629 83 ELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-HRPSELSGGERQRVAIARALV 161 (233)
T ss_pred HHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHh
Confidence 01244433321 1111 01245678899999976554 567899999999999998877
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~ 208 (233)
T PRK11629 162 NNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208 (233)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 5 69999999999888764 4699999999764
No 21
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.97 E-value=3.9e-30 Score=201.35 Aligned_cols=142 Identities=20% Similarity=0.298 Sum_probs=108.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------cee
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLR 72 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~ 72 (158)
.+++.+.++ +++|+. ..+|+|+||+|++|++++|+||||||||||+++|++.... +..
T Consensus 5 ~~~i~i~~l-~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 5 VAPIDFRNV-EKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred CceEEEEeE-EEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 356777666 999975 3589999999999999999999999999999999964211 112
Q ss_pred eeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 73 IGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 73 ~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
+|+.++.. .+.+ ...+++.++++.+++....+ +++.+||||||||++||++++.
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-AKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-CchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 45444321 1111 01234567889999976544 5789999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||++||++++
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 79999999999998775 4799999999864
No 22
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.7e-30 Score=204.98 Aligned_cols=141 Identities=25% Similarity=0.315 Sum_probs=105.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR 75 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~ 75 (158)
++.+.++ ++.|++. ..+|+++||++++||+++|+||||||||||+++|++.... ...+++
T Consensus 3 ~l~i~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAV-RKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeE-EEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3555565 8888422 3589999999999999999999999999999999974321 112444
Q ss_pred cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.+|.. + +++ ...+++.++++.+++.+..+ +++.+|||||||||+||||++.
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLD-RKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 44321 1 111 01245678899999987655 5679999999999999998775
Q ss_pred ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.+++. +.|+|+||||.++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 197 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVE 197 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 79999998888877643 5799999999753
No 23
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.97 E-value=5.6e-30 Score=191.26 Aligned_cols=139 Identities=31% Similarity=0.391 Sum_probs=103.0
Q ss_pred hheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------c
Q 044538 17 LIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------K 70 (158)
Q Consensus 17 ~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~ 70 (158)
+.++ ++.|+... ..+++++||+|++|++++|+||||||||||+++|++.... .
T Consensus 3 ~~~l-~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (218)
T cd03255 3 LKNL-SKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRR 81 (218)
T ss_pred Eeee-EEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHh
Confidence 3444 88886521 3589999999999999999999999999999999864210 0
Q ss_pred eeeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 71 LRIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 71 ~~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
..+++.++.. .+.+. ..+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 82 RHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-HYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-cChhhcCHHHHHHHHHHHHHccCCC
Confidence 1233333221 01100 1245677899999976554 5678999999999999998775
Q ss_pred ---------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||+||||+++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 203 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 69999999999888764 4699999999764
No 24
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=3.9e-30 Score=202.91 Aligned_cols=145 Identities=26% Similarity=0.339 Sum_probs=107.8
Q ss_pred chhhhhheeeeEEcCCC--------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------
Q 044538 12 SPMLQLIEVISFSYPNL--------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~--------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------- 69 (158)
.+++++.++ ++.|+.. ...+|+||||+|++||+++|+|+||||||||+++|++....
T Consensus 3 ~~~l~v~nl-~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~ 81 (327)
T PRK11308 3 QPLLQAIDL-KKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81 (327)
T ss_pred CceEEEeee-EEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCc
Confidence 356777776 8888631 23689999999999999999999999999999999853210
Q ss_pred ---------ceeeeccccchh----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538 70 ---------KLRIGRHSRHLE----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV 117 (158)
Q Consensus 70 ---------~~~~~~~~~~~~----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 117 (158)
+..+++.+|... +.+ ...+++.++++.+|+++...++++++|||||+|
T Consensus 82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q 161 (327)
T PRK11308 82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ 161 (327)
T ss_pred CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence 112444444310 000 012457788999999643334567999999999
Q ss_pred HHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|++||+|++. +||..++..+++.|.++ +.|+|+||||+++
T Consensus 162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~ 217 (327)
T PRK11308 162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSV 217 (327)
T ss_pred HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999998875 69999999998888654 5799999999764
No 25
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.2e-29 Score=189.37 Aligned_cols=148 Identities=23% Similarity=0.325 Sum_probs=110.5
Q ss_pred CCCCCCchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------
Q 044538 6 EPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------- 69 (158)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------- 69 (158)
+|....++++.+.++ ++.|+.. .+++++||++++|++++|+||||||||||+++|++....
T Consensus 3 ~~~~~~~~~l~~~~l-~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 3 EPLHTAPPLLAAHAL-AFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79 (214)
T ss_pred cCCCCCcceEEEeeE-EEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchh
Confidence 444555577877776 8888653 589999999999999999999999999999999964211
Q ss_pred -ceeeeccccch--------hhHh---------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 70 -KLRIGRHSRHL--------EDLL---------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
...+++.++.. .+.. ...+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 158 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYED-TLVRQLSAGQKKRLALARLWLSPAPL 158 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhcc-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00133332211 1111 12244567889999976544 5678999999999999988774
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|++|||.++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (214)
T PRK13543 159 WLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYA 199 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 69999999999888765 5799999999865
No 26
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.97 E-value=4.6e-30 Score=204.28 Aligned_cols=140 Identities=24% Similarity=0.375 Sum_probs=107.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeec
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGR 75 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~ 75 (158)
++.+.++ +++|++. .+|+++||++++|++++|+||||||||||+++|+|.... ...+++
T Consensus 4 ~l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNI-RKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEE-EEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4566666 8888753 479999999999999999999999999999999975321 112444
Q ss_pred cccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.+|.. + +++ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-KYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 43321 1 111 11346778999999987665 5679999999999999999875
Q ss_pred ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||...+..+.+.+++. +.|+|+||||.++
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~e 197 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE 197 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 69999998888877653 6799999999764
No 27
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=5.4e-30 Score=203.68 Aligned_cols=141 Identities=21% Similarity=0.330 Sum_probs=107.6
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIG 74 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~ 74 (158)
+++.+.++ ++.|+. ..+|+++||++++||+++|+||||||||||+++|++.... +..++
T Consensus 5 ~~l~~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNI-TKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeE-EEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46776666 999964 3589999999999999999999999999999999964321 11244
Q ss_pred ccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 75 RHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 75 ~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
+.+|.. .++. ...+++.++++.+++.+..+ +++.+|||||||||+|||+++.
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-RYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 443321 1111 11356778899999987655 5679999999999999999875
Q ss_pred -----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+.++.+.++++ +.|+|+||||.++
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 199 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 69999999888877653 5799999999764
No 28
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=6.1e-30 Score=190.51 Aligned_cols=137 Identities=26% Similarity=0.348 Sum_probs=102.6
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|++ .++++++||++++|++++|+||||||||||+++|++.... ...+++.++
T Consensus 3 ~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 3 LKGL-SKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eeee-EEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 3444 888865 3589999999999999999999999999999999964211 012344333
Q ss_pred ch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. .+.+ ...+++.++++.+++..... +++.+||||||||++||++++.
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt 158 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-RYPHELSGGQQQRVALARALAREPSLLLLDEPL 158 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 21 0111 01234667889999976544 5678999999999999988775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 193 (213)
T cd03259 159 SALDAKLREELREELKELQRELGITTIYVTHDQEE 193 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 69999999999988764 5799999999753
No 29
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.97 E-value=6.7e-30 Score=195.60 Aligned_cols=142 Identities=29% Similarity=0.300 Sum_probs=107.6
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------------eeeecc
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------LRIGRH 76 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------~~~~~~ 76 (158)
.+++.+.++ ++.|++. .+|+++||+|.+|++++|+||||||||||+++|++.... . ..+++.
T Consensus 10 ~~~l~i~~l-~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v 86 (257)
T PRK11247 10 GTPLLLNAV-SKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLM 86 (257)
T ss_pred CCcEEEEEE-EEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEE
Confidence 456777666 9998753 589999999999999999999999999999999975321 0 113333
Q ss_pred ccch--------hhHhh------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 77 SRHL--------EDLLT------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 77 ~~~~--------~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
++.. .+.+. ..+++.++++.+++.+... +++.+||||||||++||++++. +||
T Consensus 87 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 87 FQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-EWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred ecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 3321 11111 1345677899999976554 5678999999999999988775 699
Q ss_pred HHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 131 TQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+.++..+.+.+.+. +.|||+||||+++
T Consensus 166 ~~~~~~l~~~L~~~~~~~~~tviivsHd~~~ 196 (257)
T PRK11247 166 ALTRIEMQDLIESLWQQHGFTVLLVTHDVSE 196 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999998888653 5799999999754
No 30
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.97 E-value=4e-30 Score=201.01 Aligned_cols=141 Identities=23% Similarity=0.351 Sum_probs=105.9
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI 73 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~ 73 (158)
.++.+.++ ++.|++ ..+|+++||+|++|++++|+||||||||||+++|++.... +..+
T Consensus 3 ~~i~~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGV-SKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeE-EEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 35666666 888875 3589999999999999999999999999999999964211 1123
Q ss_pred eccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.++.. .+.+. ..+.+.++++.+++.+... +++.+||||||||++||++++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-VRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4433321 11110 1134556788999976544 5679999999999999988775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||++|||+++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~ 197 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 197 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 79999999999988775 5799999999864
No 31
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.97 E-value=7.5e-30 Score=201.55 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=108.4
Q ss_pred CCCchhhhhheeeeEEcCCC-----------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------
Q 044538 9 ESTSPMLQLIEVISFSYPNL-----------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------- 69 (158)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~-----------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------- 69 (158)
+...+++++.++ ++.|+.. ...+++|+||+|.+||+++|+|+||||||||+++|++....
T Consensus 3 ~~~~~~l~v~~l-~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~ 81 (331)
T PRK15079 3 EGKKVLLEVADL-KVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWL 81 (331)
T ss_pred CCCCceEEEeCe-EEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEEC
Confidence 344567777777 8888631 23589999999999999999999999999999999853210
Q ss_pred ---------------ceeeeccccch----h------hHh-----------h---HHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538 70 ---------------KLRIGRHSRHL----E------DLL-----------T---MEEAVHAKLRKFGLPGHNHLTPIAN 110 (158)
Q Consensus 70 ---------------~~~~~~~~~~~----~------~~~-----------~---~~~~~~~~l~~~~l~~~~~~~~~~~ 110 (158)
+..+++.+|.. . +.+ + ..+.+.++++.+++.+...++++++
T Consensus 82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~ 161 (331)
T PRK15079 82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE 161 (331)
T ss_pred CEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence 11244443331 1 000 1 1234567889999954333456799
Q ss_pred CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 111 LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|||||+|||+||+|++. +||+.++..+++.|+++ +.|+|+||||+++
T Consensus 162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~ 224 (331)
T PRK15079 162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV 224 (331)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999999999998875 69999999888887654 5799999999864
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.96 E-value=7.1e-30 Score=202.29 Aligned_cols=141 Identities=22% Similarity=0.339 Sum_probs=107.2
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI 73 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~ 73 (158)
+++.+.++ +++|+.. .+|+|+||+|++|++++|+||||||||||+++|++...+ +..+
T Consensus 40 ~~i~i~nl-~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 40 VAIDLAGV-SKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred eeEEEEEE-EEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 35666666 8888753 589999999999999999999999999999999964211 1124
Q ss_pred eccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.++.. .+.+. ..+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~-~~~~~LS~G~kqrv~lA~aL~~~P~lLi 195 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKAD-ARVSDLSGGMKRRLTLARALINDPQLLI 195 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhC-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4443321 11110 1234567889999986554 5679999999999999988775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||++|||+++
T Consensus 196 LDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e 234 (340)
T PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEE 234 (340)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 79999999999998775 5799999999864
No 33
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8e-30 Score=199.46 Aligned_cols=142 Identities=22% Similarity=0.283 Sum_probs=105.2
Q ss_pred hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
+.+.++ +++|+... ..+|+|+||+|.+||+++|+||||||||||+++|++....
T Consensus 3 i~~~~l-~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNI-VKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEE-EEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 445555 89997532 2589999999999999999999999999999999964210
Q ss_pred ----------------------ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCCCCCCCC
Q 044538 70 ----------------------KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLPGHNHLT 106 (158)
Q Consensus 70 ----------------------~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~~~~~~~ 106 (158)
+..+|+.+|.. . +.+ ...+++.++++.+|+.....++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 01134444421 0 101 0124577889999996323346
Q ss_pred CCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 107 PIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 107 ~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
++.+||||||||++||++++. +||+.++..+++.++++ +.|||+||||+++
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~ 227 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDN 227 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHH
Confidence 779999999999999988775 69999999998888654 5799999999864
No 34
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.96 E-value=6.9e-30 Score=189.92 Aligned_cols=136 Identities=33% Similarity=0.458 Sum_probs=100.9
Q ss_pred eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeeccccch
Q 044538 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRHSRHL 80 (158)
Q Consensus 21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~~~~~ 80 (158)
+++.|++....+++++||+|++|++++|+||||||||||+++|++.... ...+++.++..
T Consensus 5 l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (211)
T cd03225 5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84 (211)
T ss_pred EEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecCh
Confidence 3888865223589999999999999999999999999999999964211 01133333321
Q ss_pred ---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 81 ---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 81 ---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
.+.+. ..+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 85 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 85 DDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred hhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 01100 1234567888999976544 5679999999999999998775
Q ss_pred CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~ 196 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDL 196 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999988765 4699999999754
No 35
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=9.2e-30 Score=192.23 Aligned_cols=137 Identities=28% Similarity=0.354 Sum_probs=102.1
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ceee
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KLRI 73 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~~~ 73 (158)
+.++ ++.|+. ..+++|+||+|++|++++|+||||||||||+++|++.... +..+
T Consensus 3 ~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGL-TKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 3444 888864 3589999999999999999999999999999999964210 0113
Q ss_pred eccccch--------hhHh----------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 74 GRHSRHL--------EDLL----------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~----------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.++.. .+.+ . ..+++.++++.+++..... +++.+|||||||||+||++++.
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~ia~al~~~p~ll 158 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-LYPAELSGGMKKRVALARALALDPELL 158 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3333321 0100 0 1234567889999976554 5679999999999999988775
Q ss_pred -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|||+||||+++
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~ 199 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDT 199 (235)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 69999999999888764 5799999999764
No 36
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.3e-29 Score=196.90 Aligned_cols=141 Identities=25% Similarity=0.314 Sum_probs=105.1
Q ss_pred hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
+.+.++ ++.|+... .++|+|+||+|.+||+++|+||||||||||+++|++....
T Consensus 3 l~~~~l-~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENL-THIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEE-EEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 445555 88886421 3589999999999999999999999999999999964210
Q ss_pred ceeeeccccchh---------hHhh------------HHHHHHHHHHHcCCC--CCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 KLRIGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLP--GHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 ~~~~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
...+++.++... +.+. ..+++.++++.+|+. ... ++++.+||||||||++||++++
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYK-DKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhc-cCCcccCCHHHHHHHHHHHHHH
Confidence 112454444310 1000 124567889999996 333 4667999999999999999887
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 207 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED 207 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5 69999999999888654 5799999999764
No 37
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=197.18 Aligned_cols=142 Identities=23% Similarity=0.263 Sum_probs=105.0
Q ss_pred hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
+.+.++ +++|++.. .++|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 3 l~~~~l-~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKV-EHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEE-EEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 445555 89996421 3589999999999999999999999999999999864210
Q ss_pred --ceeeeccccch----hh-----Hh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 --KLRIGRHSRHL----ED-----LL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 --~~~~~~~~~~~----~~-----~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
...+++.++.. .+ .+ ...+++.++++.+++.....++++.+||||||||++||++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 01245544431 10 00 012356778899999633334677999999999999999877
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.+...+++.++++ +.|||++|||+++
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~ 208 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMED 208 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5 69999999998888654 5799999999764
No 38
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.96 E-value=9.4e-30 Score=189.56 Aligned_cols=140 Identities=26% Similarity=0.374 Sum_probs=103.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~ 71 (158)
+.+.++ ++.|+.. ..+|+|+||+|++|++++|+||||||||||+++|++.... ..
T Consensus 2 l~~~~l-~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNV-SKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEee-eEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 445555 8888522 3589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 72 RIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.+++.++.. .+.+ ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~l 158 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKAD-AFPEQLSGGEQQRVAIARAIVNSPPL 158 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 133333221 0110 01245677889999976544 5678999999999999988775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 199 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSL 199 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999988764 5799999999754
No 39
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-29 Score=197.00 Aligned_cols=143 Identities=23% Similarity=0.301 Sum_probs=104.9
Q ss_pred hhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538 14 MLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------- 69 (158)
|+.+.++ ++.|+... ..+|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 1 mi~~~~v-~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 79 (288)
T PRK13643 1 MIKFEKV-NYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEI 79 (288)
T ss_pred CEEEEEE-EEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccH
Confidence 3455566 89996432 2489999999999999999999999999999999964210
Q ss_pred ---ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 70 ---KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 70 ---~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
+..+++.++.. . +.+ ...+++.++++.+++.....++++.+||||||||++||+++
T Consensus 80 ~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 80 KPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 01234444321 0 000 01234667888999964233467799999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~ 206 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDD 206 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 75 69999999998888654 5799999999764
No 40
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.2e-30 Score=217.44 Aligned_cols=144 Identities=31% Similarity=0.522 Sum_probs=111.9
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE 81 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~ 81 (158)
..+++.+.++ ++.|++ ..+|+|+||+|.+|++++|+||||||||||+++|++...+ ...+++.++...
T Consensus 309 ~~~~l~~~~l-~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~ 385 (638)
T PRK10636 309 PNPLLKMEKV-SAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQL 385 (638)
T ss_pred CCceEEEEee-EEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcch
Confidence 3456776666 888864 3589999999999999999999999999999999975321 224566555310
Q ss_pred ----------hHh------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538 82 ----------DLL------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS 133 (158)
Q Consensus 82 ----------~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~ 133 (158)
+.+ ...+.+..+++.|++.....++++.+|||||||||+||++++. +||+.+
T Consensus 386 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~ 465 (638)
T PRK10636 386 EFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDM 465 (638)
T ss_pred hhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 000 0124567789999996433346789999999999999988764 799999
Q ss_pred HHHHHHHHhhcCCeEEEEeecCCC
Q 044538 134 IVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 134 ~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
...+.+.|.++++|||+||||+++
T Consensus 466 ~~~l~~~L~~~~gtvi~vSHd~~~ 489 (638)
T PRK10636 466 RQALTEALIDFEGALVVVSHDRHL 489 (638)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHH
Confidence 999999999998899999999865
No 41
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.96 E-value=8.5e-30 Score=203.97 Aligned_cols=142 Identities=24% Similarity=0.327 Sum_probs=107.6
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceee
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRI 73 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~ 73 (158)
.+++.+.++ ++.|+. ..+|+++||++++||+++|+||||||||||+++|+|.... ...+
T Consensus 12 ~~~L~l~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~i 88 (375)
T PRK09452 12 SPLVELRGI-SKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHV 88 (375)
T ss_pred CceEEEEEE-EEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 456776666 888874 3589999999999999999999999999999999974321 1124
Q ss_pred eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.+|.. .+++ ...+++.++++.+++.+..+ +++.+|||||||||+|||+++.
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQ-RKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4443321 1111 01245677899999987655 5679999999999999998775
Q ss_pred ------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||...+..+.+.|++. +.|+|+||||.++
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~e 207 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEE 207 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999998888887653 5799999999764
No 42
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.96 E-value=1.3e-29 Score=189.56 Aligned_cols=140 Identities=25% Similarity=0.314 Sum_probs=103.5
Q ss_pred hhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538 16 QLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------ 69 (158)
Q Consensus 16 ~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------ 69 (158)
.+.++ ++.|+... .++++++||+|++|++++|+||||||||||+++|++....
T Consensus 3 ~~~~v-~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 3 KCENL-GKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEee-eEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 44455 88886421 3589999999999999999999999999999999863210
Q ss_pred ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 70 KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 70 ~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
...+++.++.. .+.+ ...+.+.++++.+++++..+ +++.+||||||||++||++++.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-HRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhCCC
Confidence 01234433321 1111 01234667889999976544 5678999999999999998775
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 204 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 79999999999888654 5799999999764
No 43
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.96 E-value=1.2e-29 Score=191.81 Aligned_cols=143 Identities=22% Similarity=0.272 Sum_probs=107.5
Q ss_pred hhhhheeeeEEcCCCC-------CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhh--H
Q 044538 14 MLQLIEVISFSYPNLQ-------DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLED--L 83 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~-------~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~--~ 83 (158)
++++.++ ++.|.-.. ..+++||||+|++||+++|+|+|||||||+-|++.+..... ..+-+....... .
T Consensus 4 ll~v~~l-~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~ 82 (268)
T COG4608 4 LLEVKNL-KKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSK 82 (268)
T ss_pred eEEEecc-EEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcch
Confidence 4555555 77775321 36899999999999999999999999999999999766532 122222222111 1
Q ss_pred hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCe
Q 044538 84 LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGG 147 (158)
Q Consensus 84 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~t 147 (158)
....+++.++++.+|+......+++++|||||+||++||||+.. .||...+.++++++.++ +.|
T Consensus 83 ~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt 162 (268)
T COG4608 83 EERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLT 162 (268)
T ss_pred hHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCe
Confidence 12346788999999998755567779999999999999999875 58888888888887654 579
Q ss_pred EEEEeecCCC
Q 044538 148 VVLVSHDSRL 157 (158)
Q Consensus 148 vi~vtHd~~~ 157 (158)
.++||||+..
T Consensus 163 ~lFIsHDL~v 172 (268)
T COG4608 163 YLFISHDLSV 172 (268)
T ss_pred EEEEEEEHHh
Confidence 9999999865
No 44
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-29 Score=194.23 Aligned_cols=139 Identities=27% Similarity=0.353 Sum_probs=104.2
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------------eeeeccccc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------LRIGRHSRH 79 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------~~~~~~~~~ 79 (158)
+.+.++ ++.|++ ..+++|+||+|++|++++|+||||||||||+++|++.... . ..+++.++.
T Consensus 2 l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHL-YADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEE-EEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 445555 888865 3589999999999999999999999999999999975321 0 013333322
Q ss_pred h--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 80 L--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 80 ~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
. .+.+. ..+++.++++.+++..... +++.+||||||||++||++++.
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 1 11110 1234677899999976544 5678999999999999998775
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~ 191 (255)
T PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEE 191 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999988764 4799999999764
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=201.02 Aligned_cols=142 Identities=27% Similarity=0.386 Sum_probs=106.0
Q ss_pred hhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 14 MLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
|+.+.++ +++|+. ....+|+|+||+|++|++++|+||||||||||+++|++....
T Consensus 1 mi~i~~l-~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 79 (343)
T PRK11153 1 MIELKNI-SKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRK 79 (343)
T ss_pred CEEEEeE-EEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3455555 889972 134689999999999999999999999999999999864210
Q ss_pred -ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 70 -KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+..+++.++.. .+.+ ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qRv~lAraL~~~ 158 (343)
T PRK11153 80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-RYPAQLSGGQKQRVAIARALASN 158 (343)
T ss_pred HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHHcC
Confidence 11244433321 0111 01245677899999986554 5678999999999999998775
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~ 203 (343)
T PRK11153 159 PKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDV 203 (343)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999988764 5799999999764
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.9e-29 Score=188.82 Aligned_cols=139 Identities=27% Similarity=0.320 Sum_probs=103.2
Q ss_pred hheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccc
Q 044538 17 LIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRH 79 (158)
Q Consensus 17 ~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~ 79 (158)
+.++ ++.|++.. .++++++||+|++|++++|+||||||||||+++|++.... ...+++.++.
T Consensus 3 ~~~l-~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~ 81 (220)
T cd03293 3 VRNV-SKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQ 81 (220)
T ss_pred EEEE-EEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecc
Confidence 3444 88886421 3589999999999999999999999999999999975321 0123333322
Q ss_pred h--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 80 L--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 80 ~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
. .+.+. ..+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 82 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 82 DALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred cccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 1 11110 1245677889999976544 5678999999999999998775
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|||++|||+++
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 194 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDE 194 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 69999999999988754 4799999999763
No 47
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.7e-29 Score=194.92 Aligned_cols=141 Identities=26% Similarity=0.347 Sum_probs=106.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
++.+.++ ++.|+.. ..+|+|+||+|.+||+++|+||||||||||+++|++.... ...+
T Consensus 4 ~l~~~~l-~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDL-HFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEE-EEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5666666 8888643 3589999999999999999999999999999999964211 1124
Q ss_pred eccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 74 GRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 74 ~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.++... +.+ ...+++.++++.+++.+... +++.+|||||+||++||+|++.
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRD-KPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 44443310 011 01245677889999976554 5679999999999999998875
Q ss_pred -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~ 200 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDL 200 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999888765 5799999999864
No 48
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.96 E-value=1e-29 Score=202.81 Aligned_cols=139 Identities=20% Similarity=0.292 Sum_probs=104.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~ 74 (158)
+.+.++ ++.|+. ..+|+++||+|.+|++++|+||||||||||+++|++..... ..++
T Consensus 6 l~~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 6 IRIDHL-RVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred EEEEEE-EEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 344555 888865 35899999999999999999999999999999999753211 1133
Q ss_pred ccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 75 RHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 75 ~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
+.+|.. .+++ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAA-HLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 333321 1111 11245778899999987655 5679999999999999999875
Q ss_pred -----CCCHHHHHHHHHHHhhc-----CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF-----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~-----~~tvi~vtHd~~~ 157 (158)
+||+..+.++.+.+++. +.|+|+||||+++
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~e 201 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDD 201 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 69999998888877543 5799999999864
No 49
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=6.5e-30 Score=209.31 Aligned_cols=146 Identities=23% Similarity=0.295 Sum_probs=107.6
Q ss_pred CchhhhhheeeeEEcCC---------CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------
Q 044538 11 TSPMLQLIEVISFSYPN---------LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------ 69 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~---------~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------ 69 (158)
.+|++.+.++ ++.|.. +...+++||||++.+||++||+|+||||||||.|+|++...+
T Consensus 277 ~~~ll~V~~l-~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~ 355 (539)
T COG1123 277 AEPLLSVRNL-SKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355 (539)
T ss_pred cCceeEeeee-eeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc
Confidence 3456667676 888863 124689999999999999999999999999999999864221
Q ss_pred ------------ceeeeccccc--hhhHh-------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538 70 ------------KLRIGRHSRH--LEDLL-------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQK 116 (158)
Q Consensus 70 ------------~~~~~~~~~~--~~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 116 (158)
+.++.++..+ +.+.. ...+++.++++.++++.....+++++||||||
T Consensus 356 ~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred ccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchh
Confidence 1111111111 00111 11245778899999987444467799999999
Q ss_pred HHHHHHHHHhh------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538 117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL 157 (158)
Q Consensus 117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~ 157 (158)
||+|||+|+.. .||+..+..+.++|.+ ++.|.||||||+.+
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v 492 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV 492 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 99999998765 6999999988888865 46899999999865
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.96 E-value=1.9e-29 Score=187.79 Aligned_cols=137 Identities=22% Similarity=0.310 Sum_probs=102.1
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|++. ++++|+||+|++|++++|+||||||||||+++|++.... ...+++.++
T Consensus 3 ~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 3 LENV-TKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred EEee-EEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 3444 8888653 589999999999999999999999999999999964211 012344332
Q ss_pred ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. .+... ..+++.++++.+++....+ +++.+||||||||++||++++.
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~laral~~~p~llllDEPt 158 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPL 158 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 21 01110 1234567789999976544 5678999999999999988775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~ 193 (213)
T cd03301 159 SNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVE 193 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999888654 5799999999753
No 51
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.8e-29 Score=194.20 Aligned_cols=143 Identities=30% Similarity=0.398 Sum_probs=108.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
+++.+.++ ++.|+....++|+++||+|.+||+++|+||||||||||+++|++.... ...
T Consensus 4 ~~l~~~~l-~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHI-SFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEE-EEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 46676666 999975444689999999999999999999999999999999964210 112
Q ss_pred eeccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++.. .+.+. ..+++.++++.+++..... +++.+||||||||++||++++.
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLN-REPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 44444322 01110 1234677889999986554 5678999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 69999999999988754 4699999999764
No 52
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-29 Score=194.72 Aligned_cols=142 Identities=25% Similarity=0.378 Sum_probs=106.3
Q ss_pred hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
++.+.++ +++|+.. ...+|+|+||+|++||+++|+||||||||||+++|++.... +..
T Consensus 4 ~l~~~~l-~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 4 IIEVKNL-TFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred eEEEEeE-EEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 5666666 9999642 23589999999999999999999999999999999964210 012
Q ss_pred eeccccchh---------hHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHLE---------DLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~~---------~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++... +.+ . ..+++.++++.+++.+..+ +++.+|||||+||++||++++.
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKE-REPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 344333210 100 0 1245678899999986554 5678999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 69999999998887654 5799999999754
No 53
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=2e-29 Score=196.14 Aligned_cols=140 Identities=26% Similarity=0.372 Sum_probs=107.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~ 75 (158)
+.+.++ ++.|+. ...+|+||||+|++|+++||+||||||||||+++|++...+ +..+|+
T Consensus 5 i~~~~l-~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 5 IEVRNL-TKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred eeecce-EEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 344555 888873 23589999999999999999999999999999999964321 112555
Q ss_pred cccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.++.. .+.++ ..++++++++.++++... ++++.+||+|||||+.||.+++.
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD 161 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-NKKVRTLSGGMKQRLSIALALLHDPELLILD 161 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-CcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 54431 11111 135688899999998744 46789999999999999988775
Q ss_pred ----CCCHHHHHHHHHHHhhc---C-CeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF---A-GGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~---~-~tvi~vtHd~~~ 157 (158)
+||+.++.++++.++++ + .||+++||.++.
T Consensus 162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e 199 (293)
T COG1131 162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEE 199 (293)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHH
Confidence 79999999999998765 3 599999998764
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.8e-29 Score=188.94 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=102.2
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS 77 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~ 77 (158)
+.++ ++.|+. ..+++|+||++.+||+++|+||||||||||+++|++.... ...+++.+
T Consensus 3 ~~~~-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENL-VKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEE-EEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 3444 888864 3589999999999999999999999999999999964211 01233333
Q ss_pred cch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 78 RHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 78 ~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
+.. .+.+ ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qr~~la~al~~~p~llllDEP 158 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP 158 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 221 0100 01235677899999976544 5679999999999999988775
Q ss_pred --CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||.++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~ 194 (220)
T cd03265 159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEE 194 (220)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999998888653 5799999999764
No 55
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.6e-29 Score=195.04 Aligned_cols=142 Identities=24% Similarity=0.314 Sum_probs=104.7
Q ss_pred hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
+.+.++ ++.|+... .++|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 3 l~~~~l-~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNV-SYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEE-EEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 444555 88996422 3589999999999999999999999999999999863210
Q ss_pred --ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 --KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 --~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
+..+++.++.. . +.+ ...+++.++++.+|+.....++++.+||||||||++||++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 11244444431 0 000 012456678899999632233567999999999999999887
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++ +.|||+||||+++
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~ 208 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNE 208 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 5 69999999999888764 5799999999764
No 56
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.9e-29 Score=196.70 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=106.7
Q ss_pred chhhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------
Q 044538 12 SPMLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------- 69 (158)
++++.+.++ ++.|+... .++|+|+||+|++|++++|+||||||||||+++|++....
T Consensus 19 ~~~l~~~nl-~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 19 DIILRVKNL-YCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CceEEEEeE-EEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 457777666 99997431 3589999999999999999999999999999999863210
Q ss_pred -----------------ceeeeccccch----h-----hHh------------hHHHHHHHHHHHcCCC-CCCCCCCCCC
Q 044538 70 -----------------KLRIGRHSRHL----E-----DLL------------TMEEAVHAKLRKFGLP-GHNHLTPIAN 110 (158)
Q Consensus 70 -----------------~~~~~~~~~~~----~-----~~~------------~~~~~~~~~l~~~~l~-~~~~~~~~~~ 110 (158)
+..+++.++.. . +.. ...+++.++++.++++ .... +++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-~~~~~ 176 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE-RSPFG 176 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc-CCccc
Confidence 01133333321 0 000 0123566788999996 3343 56789
Q ss_pred CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 111 LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||||||||++||++++. +||+.++..+.+.+.+. +.|||+||||+++
T Consensus 177 LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~ 238 (320)
T PRK13631 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEH 238 (320)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 99999999999998875 69999999999888654 5799999999863
No 57
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.96 E-value=2.5e-29 Score=190.58 Aligned_cols=140 Identities=29% Similarity=0.385 Sum_probs=102.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~ 71 (158)
+.+.++ ++.|+. ..++++++||++.+|++++|+||||||||||+++|++.... +.
T Consensus 2 l~~~~l-~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENL-SKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEee-eeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 444555 888862 23589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHH
Q 044538 72 RIGRHSRHL--------EDLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. .+.+ ...+++.++++.+++....+ +++.+||||||||++||+
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-QRADQLSGGQQQRVAIAR 158 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHH
Confidence 133332221 0111 01235667889999976544 567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+++. +||+.++..+.+.+++. +.|||++|||+++
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8775 69999999998888664 4699999999864
No 58
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.96 E-value=1.1e-29 Score=189.11 Aligned_cols=136 Identities=28% Similarity=0.420 Sum_probs=101.9
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccch--
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRHL-- 80 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~~-- 80 (158)
.++ ++.|++ ..+++++||+|++|++++|+||||||||||+++|++.... +..+++.++..
T Consensus 3 ~~l-~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 3 EDL-TVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred ccc-eeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 344 888864 3589999999999999999999999999999999964321 11233333221
Q ss_pred --------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 81 --------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 81 --------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
.+.+ ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-RQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 0100 01235667889999976444 5679999999999999988775
Q ss_pred ---CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~ 194 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGL 194 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999988765 3699999999764
No 59
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.6e-29 Score=178.49 Aligned_cols=142 Identities=29% Similarity=0.294 Sum_probs=105.1
Q ss_pred hhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 14 MLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
++++.++ +++.+. ....+|++|+|.|++||.++|+||||||||||+-++++....
T Consensus 6 ii~~~~l-~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 6 IIEVHHL-SKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred eeehhhh-hhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 4455444 555543 345689999999999999999999999999999999864321
Q ss_pred --ceeeeccccch--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 70 --KLRIGRHSRHL--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 70 --~~~~~~~~~~~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
...+|+++|.+ .+.++ ....+.++++.+|+..... +++.+|||||+|||+||||+..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~-HyP~qLSGGEQQRVAiARAfa~ 163 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-HYPAQLSGGEQQRVALARAFAG 163 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccc-cCccccCchHHHHHHHHHHhcC
Confidence 11244444432 11111 2355788999999987666 4568999999999999998764
Q ss_pred ------------CCCHHHHHHHHHHHh----hcCCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~~ 157 (158)
+||.+.-..+.+++- +.+.|+|+||||..+
T Consensus 164 ~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~L 209 (228)
T COG4181 164 RPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL 209 (228)
T ss_pred CCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHH
Confidence 799988888887774 456799999999753
No 60
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=199.67 Aligned_cols=143 Identities=22% Similarity=0.256 Sum_probs=105.1
Q ss_pred hhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------c--------------
Q 044538 14 MLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------K-------------- 70 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~-------------- 70 (158)
++.+.++ ++.|+... ..+|+||||+|++||+++|+|+||||||||+++|++.... .
T Consensus 3 ~L~v~~l-~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~ 81 (326)
T PRK11022 3 LLNVDKL-SVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81 (326)
T ss_pred eEEEeCe-EEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence 3566565 88886532 3589999999999999999999999999999999874320 0
Q ss_pred -------eeeeccccch----hh------H----h---------hHHHHHHHHHHHcCCCCC--CCCCCCCCCChHHHHH
Q 044538 71 -------LRIGRHSRHL----ED------L----L---------TMEEAVHAKLRKFGLPGH--NHLTPIANLSGGQKVR 118 (158)
Q Consensus 71 -------~~~~~~~~~~----~~------~----~---------~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqr 118 (158)
..+++.+|.. .+ . + ...+++.++++.+|+.+. ..++++++|||||+||
T Consensus 82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence 0134433321 00 0 0 012456788999999742 1234679999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|+||+|++. +||+.++..+++.|+++ +.|+|+||||+++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~ 216 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLAL 216 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999998875 69999999998888654 5799999999864
No 61
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.96 E-value=2.2e-29 Score=193.85 Aligned_cols=142 Identities=24% Similarity=0.318 Sum_probs=105.3
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
.+++.+.++ ++.|+. ..+|+++||+|++|++++|+||||||||||+++|++....
T Consensus 5 ~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (269)
T PRK11831 5 ANLVDMRGV-SFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81 (269)
T ss_pred cceEEEeCe-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHH
Confidence 356777776 888864 3589999999999999999999999999999999864210
Q ss_pred -ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 70 -KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
...+++.++.. .+.+. ..+.+.++++.+++....+ +++.+||||||||++||++++.
T Consensus 82 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-LMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred HhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence 01133332221 11110 0124556789999976544 5679999999999999988775
Q ss_pred ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||+||||+++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 206 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPE 206 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 69999999998888764 4699999999753
No 62
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.96 E-value=6.7e-29 Score=182.00 Aligned_cols=128 Identities=27% Similarity=0.329 Sum_probs=97.1
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ceeeeccccch----h--
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLRIGRHSRHL----E-- 81 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~~~~~~~~~----~-- 81 (158)
..+|+++||+|.+|++++|+||||||||||+++|++.... +..+++.++.. .
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 3589999999999999999999999999999999863210 01133333321 0
Q ss_pred ---hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538 82 ---DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134 (158)
Q Consensus 82 ---~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~ 134 (158)
+.+. ..+++.++++.+++.+..+ +++.+||||||||++||++++. +||+.+.
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 163 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGR 163 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 0000 1234567888999976544 5678999999999999988775 6999999
Q ss_pred HHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 135 VAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 135 ~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
..+.+.++++ +.|||++|||++++
T Consensus 164 ~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 164 EQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 9999988765 47999999999874
No 63
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.96 E-value=1.9e-29 Score=203.29 Aligned_cols=140 Identities=24% Similarity=0.398 Sum_probs=106.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
++.+.++ ++.|++ ..+|+++||+|++||+++|+||||||||||+++|++.... ...+
T Consensus 3 ~L~~~nl-s~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDL-SVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeE-EEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5666666 888875 3589999999999999999999999999999999964210 1123
Q ss_pred eccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.++.. .+.. ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-RPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCC
Confidence 4333211 0000 11346778999999986554 6789999999999999998875
Q ss_pred ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+..+..+++.|+++ +.|||++|||+++
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~ 201 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDL 201 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 69999999888888765 4699999999864
No 64
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.5e-29 Score=190.85 Aligned_cols=144 Identities=24% Similarity=0.317 Sum_probs=107.9
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ce
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KL 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~ 71 (158)
.+++.+.++ ++.|++....+++|+||+|++||+++|+||||||||||+++|++.... +.
T Consensus 5 ~~~l~i~~l-~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (269)
T PRK13648 5 NSIIVFKNV-SFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83 (269)
T ss_pred CceEEEEEE-EEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHh
Confidence 457777776 999975434589999999999999999999999999999999964211 01
Q ss_pred eeeccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 72 RIGRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 72 ~~~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
.+++.++... +.. ...+++.++++.+++.+... +++.+||||||||++||++++.
T Consensus 84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-YEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1333333210 000 01234667889999976554 5678999999999999998875
Q ss_pred ---------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||+++
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 69999999998888764 4699999999865
No 65
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.3e-29 Score=193.43 Aligned_cols=143 Identities=26% Similarity=0.384 Sum_probs=107.3
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------ce---------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------KL--------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------~~--------------- 71 (158)
+++.+.++ ++.|++...++++++||+|++|++++|+||||||||||+++|++.... .+
T Consensus 4 ~~l~i~~l-~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHV-SFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEE-EEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 35666666 999965334589999999999999999999999999999999975321 11
Q ss_pred --eeeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 72 --RIGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 72 --~~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
.+++.++... +.+. ..+++.++++.+++.+..+ +++.+|||||+||++||++++.
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-SEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHcC
Confidence 1333333210 1110 1134667899999986554 5679999999999999998775
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 206 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE 206 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 69999999998888664 4799999999764
No 66
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=3.7e-29 Score=185.39 Aligned_cols=140 Identities=26% Similarity=0.395 Sum_probs=104.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------eeeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------LRIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------~~~~~ 75 (158)
+.+.++ ++.|+. ..+++++||+|++||+++|+||||||||||+++|++.... . ..+++
T Consensus 2 l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNL-ACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEE-EEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 445555 888865 3589999999999999999999999999999999964211 0 01222
Q ss_pred cccc--------hhhHh---------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 76 HSRH--------LEDLL---------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 76 ~~~~--------~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.++. ..+.+ ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-VPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 2211 00111 11245677899999976544 5779999999999999988775
Q ss_pred -CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
+||+.+...+.+.++++ +.|+|++|||.+++
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 192 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhh
Confidence 69999999999988765 57999999998763
No 67
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=3.9e-29 Score=194.09 Aligned_cols=142 Identities=23% Similarity=0.311 Sum_probs=104.2
Q ss_pred hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
+.+.++ ++.|++.. ..+++|+||+|++||+++|+||||||||||+++|++....
T Consensus 3 i~~~~l-~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENV-DYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEE-EEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 344455 88997421 3589999999999999999999999999999999864210
Q ss_pred --ceeeeccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 --KLRIGRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 --~~~~~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
+..+++.++.. .+.+. ..+++.++++.+++......+++.+||||||||++||++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 01244444321 01110 12346778899999632233677999999999999999877
Q ss_pred h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 162 ~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~ 207 (287)
T PRK13641 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDD 207 (287)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 5 79999999999888765 4699999999764
No 68
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=3.6e-29 Score=181.13 Aligned_cols=142 Identities=30% Similarity=0.387 Sum_probs=103.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceee------------ecccc
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRI------------GRHSR 78 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~------------~~~~~ 78 (158)
++.+.++ +.+|++....+|+|+|++|.+||.++++||||||||||++++++...+ .+.+ |.++|
T Consensus 3 ~l~~~~~-sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 3 MLNVSHL-SLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred eeehhhe-EEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 3455555 899988766799999999999999999999999999999999975321 1111 11222
Q ss_pred c--hhhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 H--LEDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~--~~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
. +.+.++ ..+.+.+.+..+|+.+..+ +++.+|||||||||.||||+..
T Consensus 82 ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred cCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-cceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 1 111111 1256778899999988765 5678999999999999998765
Q ss_pred -CCCHHHHHHHHH----HHhhcCCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAV----TLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~----~l~~~~~tvi~vtHd~~~ 157 (158)
.||.-.++.+.+ ..++.+..+++||||+++
T Consensus 161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE 195 (259)
T COG4525 161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 366555554444 445667899999999875
No 69
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.96 E-value=2.9e-29 Score=187.38 Aligned_cols=141 Identities=15% Similarity=0.245 Sum_probs=104.6
Q ss_pred hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceee
Q 044538 15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~ 73 (158)
+.+.++ ++.|++.. .++++++||++++|++++|+||||||||||+++|++.... ...+
T Consensus 2 l~~~~v-~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADAL-TKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEE-EEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 445555 88887531 1589999999999999999999999999999999964311 0113
Q ss_pred eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.++.. .+.. ...+++.++++.+++.+... +++.+||||||||++||++++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~ill 159 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-RRVGGFSTGMRQKVAIARALVHDPPVLL 159 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-hhhhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 3333221 1111 01245677899999976544 5678999999999999998775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||+||||.++
T Consensus 160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 198 (218)
T cd03266 160 LDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198 (218)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999988765 4799999999753
No 70
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=7.2e-29 Score=191.15 Aligned_cols=143 Identities=29% Similarity=0.437 Sum_probs=107.2
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
+|+.+.++ ++.|+....++|+++||++.+|++++|+||||||||||+++|++.... +..
T Consensus 6 ~~l~~~nl-~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENV-SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeE-EEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 46777676 999964334689999999999999999999999999999999964210 112
Q ss_pred eeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++... +.+. ..+.+.++++.+++.+..+ +++.+|||||+||++||++++.
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-KEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 344333210 1100 1124567888999976554 5678999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 69999999999988765 3699999999864
No 71
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=1.3e-29 Score=209.56 Aligned_cols=146 Identities=37% Similarity=0.583 Sum_probs=118.8
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---------hcceeeeccccchh
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---------RQKLRIGRHSRHLE 81 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---------~~~~~~~~~~~~~~ 81 (158)
..+++.+.++ ++.|++. +.+++++||.|.+|+.+||+||||+|||||+++|++.. .....+||+.|...
T Consensus 318 g~~vl~~~~~-~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENV-SKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEecc-ccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 3456777776 9999765 46899999999999999999999999999999996532 23456777766532
Q ss_pred hHh---h------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538 82 DLL---T------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134 (158)
Q Consensus 82 ~~~---~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~ 134 (158)
... + .+..++.+|..|++......+++..||||||-|+.+|+.++. |||.+++
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~ 475 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHH
Confidence 110 0 136678899999998877778999999999999999877654 7999999
Q ss_pred HHHHHHHhhcCCeEEEEeecCCCC
Q 044538 135 VAVAVTLDEFAGGVVLVSHDSRLI 158 (158)
Q Consensus 135 ~~l~~~l~~~~~tvi~vtHd~~~~ 158 (158)
..+.+.|.++.+|||+||||.+|+
T Consensus 476 ~aLe~aL~~f~Gtvl~VSHDr~Fl 499 (530)
T COG0488 476 EALEEALLDFEGTVLLVSHDRYFL 499 (530)
T ss_pred HHHHHHHHhCCCeEEEEeCCHHHH
Confidence 999999999999999999998763
No 72
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.9e-29 Score=200.83 Aligned_cols=139 Identities=22% Similarity=0.314 Sum_probs=104.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+.+.++ ++.|++ ..+|+++||+|++|++++|+||||||||||+++|++.... ...+++.
T Consensus 4 l~i~~l-~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v 80 (369)
T PRK11000 4 VTLRNV-TKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMV 80 (369)
T ss_pred EEEEEE-EEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEE
Confidence 455555 888865 3589999999999999999999999999999999974321 1124444
Q ss_pred ccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 77 SRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 77 ~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
+|.. .+.+ ...+++.++++.+++....+ +++.+|||||||||+||++++.
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-RKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3321 1111 01245778899999986554 5679999999999999998775
Q ss_pred ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|+|+||||+++
T Consensus 160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~ 196 (369)
T PRK11000 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196 (369)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH
Confidence 69999999888877654 5799999999754
No 73
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.96 E-value=4.4e-29 Score=187.67 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=106.5
Q ss_pred hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538 13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------- 69 (158)
+++.+.++ ++.|++.. ..+++++||+|++|++++|+||||||||||+++|++....
T Consensus 5 ~~l~~~~l-~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 5 NIVEVHHL-KKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred ceEEEeee-EEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 56777666 99997532 2489999999999999999999999999999999964210
Q ss_pred ---ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 ---KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 ---~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
...+++.++.. .+.. ...+++.++++.+++..... +++.+||||||||++||++++
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrl~la~al~ 162 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLD-HLPAQLSGGEQQRVALARAFN 162 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHHHh
Confidence 01233333221 0111 01245677899999976544 567899999999999998877
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.+...+.+.++++ +.|||++|||.++
T Consensus 163 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 209 (228)
T PRK10584 163 GRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209 (228)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 5 69999999999888654 5699999999753
No 74
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=6.6e-29 Score=192.22 Aligned_cols=143 Identities=24% Similarity=0.361 Sum_probs=107.6
Q ss_pred hhhhhheeeeEEcCCC----CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------
Q 044538 13 PMLQLIEVISFSYPNL----QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~----~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------- 69 (158)
+|+.+.++ +++|+.. .+++|+++||+|++||+++|+||||||||||+++|++....
T Consensus 3 ~~l~~~~l-~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 81 (280)
T PRK13633 3 EMIKCKNV-SYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 (280)
T ss_pred ceEEEeee-EEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHH
Confidence 46676666 9999742 23589999999999999999999999999999999864210
Q ss_pred --ceeeeccccch---------hhHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 --KLRIGRHSRHL---------EDLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 --~~~~~~~~~~~---------~~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
...+++.++.. .+.+ . ..+++.++++.+|+..... +++.+||||||||++||++++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 82 DIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR-HAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHH
Confidence 11234433321 0000 0 1245677889999976554 567999999999999999877
Q ss_pred h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~ 207 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 5 69999999999888764 5799999999865
No 75
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.96 E-value=3.7e-29 Score=192.40 Aligned_cols=144 Identities=21% Similarity=0.239 Sum_probs=106.0
Q ss_pred hhhhhheeeeEEcCCC-------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------
Q 044538 13 PMLQLIEVISFSYPNL-------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------- 69 (158)
+|+.+.++ +++|++. ..++|+++||+|++|++++|+||||||||||+++|++....
T Consensus 3 ~~l~~~~l-~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 3 TLLEVRNL-SKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred ceEEEece-EEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 56777776 9888631 23589999999999999999999999999999999964211
Q ss_pred ----ceeeeccccch----h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 70 ----KLRIGRHSRHL----E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 70 ----~~~~~~~~~~~----~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
...+++.++.. . +.+ ...+.+.++++.+++.....++++.+||||||||++||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 01234433321 0 000 01234667899999953333356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.+.++ +.|||++|||+++
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 88775 69999999999888764 5799999999754
No 76
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.6e-29 Score=189.45 Aligned_cols=139 Identities=27% Similarity=0.347 Sum_probs=103.2
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+.+.++ ++.|++ ..+|+++||+|++|++++|+||||||||||+++|++.... ...+++.
T Consensus 3 l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNV-SKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeE-EEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 445555 888875 3589999999999999999999999999999999964211 0123333
Q ss_pred ccch--------hhHh-------------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 77 SRHL--------EDLL-------------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 77 ~~~~--------~~~~-------------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.. .+.+ . ..+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-RYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 2221 0100 0 1234567889999976544 5678999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 199 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999888764 5799999999753
No 77
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=4.1e-29 Score=200.21 Aligned_cols=142 Identities=22% Similarity=0.304 Sum_probs=106.1
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceee
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRI 73 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~ 73 (158)
.+++.+.++ ++.|++ ..+|+++||++++|++++|+||||||||||+++|++.... +..+
T Consensus 17 ~~~l~l~~v-~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNL-TKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeE-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 346776666 888864 3589999999999999999999999999999999964321 1124
Q ss_pred eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.+|.. .+++ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-RKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4444321 1111 01245678899999987655 5679999999999999998775
Q ss_pred ------CCCHHHHHHHHHHH----hhcCCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTL----DEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l----~~~~~tvi~vtHd~~~ 157 (158)
+||...+..+.+.+ ++.+.|+|+||||.++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e 212 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEE 212 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 69999988777554 3446899999999764
No 78
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.5e-29 Score=197.78 Aligned_cols=143 Identities=15% Similarity=0.251 Sum_probs=105.0
Q ss_pred hhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-------cc--------------
Q 044538 14 MLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-------QK-------------- 70 (158)
Q Consensus 14 ~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-------~~-------------- 70 (158)
++.+.++ ++.|+. +...+++|+||+|.+||+++|+|+||||||||+++|++... ..
T Consensus 3 ~L~v~~l-~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 3 LLDIRNL-TIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred eEEEeee-EEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 5566666 888853 22358999999999999999999999999999999987532 00
Q ss_pred -------eeeeccccchh----h------Hh------------------hHHHHHHHHHHHcCCCCCC--CCCCCCCCCh
Q 044538 71 -------LRIGRHSRHLE----D------LL------------------TMEEAVHAKLRKFGLPGHN--HLTPIANLSG 113 (158)
Q Consensus 71 -------~~~~~~~~~~~----~------~~------------------~~~~~~~~~l~~~~l~~~~--~~~~~~~LSg 113 (158)
..+++.+|... + .+ ...+++.++++.+|+.+.. .++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 02344333210 0 00 0123566789999997521 2356689999
Q ss_pred HHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 114 GQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 114 Gqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||+|||+||+|++. +||+.++.++++.|+++ +.|+|+||||+++
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~ 221 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM 221 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 99999999998875 69999999998888763 5799999999764
No 79
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.96 E-value=5.7e-29 Score=185.24 Aligned_cols=138 Identities=28% Similarity=0.425 Sum_probs=101.9
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ceee
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KLRI 73 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~~~ 73 (158)
+.++ ++.|++. ..+++++||++++|++++|+||||||||||+++|++.... +..+
T Consensus 3 ~~~l-~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 3 FINV-TKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEE-EEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 3444 8888643 3589999999999999999999999999999999964211 0012
Q ss_pred eccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.++.. .+.+ ...+++.++++.++++...+ +++.+||||||||++||++++.
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-ALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-CChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 3322211 0100 01234667889999976544 5678999999999999998775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||.++
T Consensus 160 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 160 ADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 79999999999988765 4799999999753
No 80
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.96 E-value=3.3e-29 Score=197.89 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=106.3
Q ss_pred chhhhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------
Q 044538 12 SPMLQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------------------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------------------- 70 (158)
.+++++.++ ++.|.. +...+++|+||+|++||+++|+|+||||||||+++|++.....
T Consensus 10 ~~~L~i~~l-~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 10 DALLDVKDL-RVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CceEEEeCe-EEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 456777776 888853 2235899999999999999999999999999999998643210
Q ss_pred --------eeeeccccchh----------hH----h------h---HHHHHHHHHHHcCCCCCC--CCCCCCCCChHHHH
Q 044538 71 --------LRIGRHSRHLE----------DL----L------T---MEEAVHAKLRKFGLPGHN--HLTPIANLSGGQKV 117 (158)
Q Consensus 71 --------~~~~~~~~~~~----------~~----~------~---~~~~~~~~l~~~~l~~~~--~~~~~~~LSgGqkq 117 (158)
..+++.+|... .. . . ..+++.++++.+++++.. ..+++++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 02344333311 00 0 0 123566788999997421 13466999999999
Q ss_pred HHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||+||++++. +||..++..+++.|+++ +.|+|+||||+++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~ 224 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV 224 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 9999998875 69999999888877654 5799999999764
No 81
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.96 E-value=3.4e-29 Score=191.12 Aligned_cols=141 Identities=29% Similarity=0.448 Sum_probs=106.9
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--h
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--E 81 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--~ 81 (158)
+++.+.++ ++.|++. .+|+++||+|++|++++|+||||||||||+++|++.... ...+++.++.. .
T Consensus 3 ~~l~~~~l-~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~ 79 (251)
T PRK09544 3 SLVSLENV-SVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLD 79 (251)
T ss_pred cEEEEece-EEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccc
Confidence 35666666 8888753 589999999999999999999999999999999975321 11244444321 1
Q ss_pred --------hHhh-----HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHH
Q 044538 82 --------DLLT-----MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVA 136 (158)
Q Consensus 82 --------~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~ 136 (158)
+... ..+++.++++.+++.+..+ +++.+|||||+||++||++++. +||+.+...
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~ 158 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVA 158 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1100 1245677889999976544 5678999999999999988774 699999999
Q ss_pred HHHHHhhc----CCeEEEEeecCCC
Q 044538 137 VAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 137 l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+.+.+++. +.|||++|||+++
T Consensus 159 l~~~L~~~~~~~g~tiiivsH~~~~ 183 (251)
T PRK09544 159 LYDLIDQLRRELDCAVLMVSHDLHL 183 (251)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHH
Confidence 98888653 5799999999864
No 82
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=8e-29 Score=187.51 Aligned_cols=138 Identities=28% Similarity=0.352 Sum_probs=101.6
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ceee
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KLRI 73 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~~~ 73 (158)
+.++ ++.|+.. ..+++++||++.+|++++|+||||||||||+++|++.... ...+
T Consensus 3 ~~~l-~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 3 VENL-SKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EeeE-EEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 3444 8888642 3589999999999999999999999999999999864210 0113
Q ss_pred eccccch--------hhHhh--------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 74 GRHSRHL--------EDLLT--------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 74 ~~~~~~~--------~~~~~--------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
++.++.. .+.+. ..+++.++++.+++..... +++.+||||||||++||+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY-QRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC-CCcccCCHHHHHHHHHHHHH
Confidence 3332210 01110 1234567889999976544 56789999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+. +||+.+...+.+.+++. +.|||++|||+++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~ 207 (241)
T cd03256 160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDL 207 (241)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 75 69999999999888764 5799999999764
No 83
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.96 E-value=5e-29 Score=186.34 Aligned_cols=139 Identities=20% Similarity=0.309 Sum_probs=103.0
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS 77 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~ 77 (158)
+.++ ++.|++...++|+++||++++|++++|+||||||||||+++|++.... ...+++.+
T Consensus 3 ~~~l-~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~ 81 (220)
T cd03263 3 IRNL-TKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCP 81 (220)
T ss_pred EEee-EEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEec
Confidence 3444 888865324589999999999999999999999999999999964211 01133333
Q ss_pred cch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 78 RHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 78 ~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
+.. .+.+ ...+++.++++.+++.+..+ +++.+|||||+||++||++++.
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 82 QFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-KRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred CcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-ChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 210 1111 01234667889999976544 5678999999999999988775
Q ss_pred --CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++. .|+|++|||+++
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 194 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRKGRSIILTTHSMDE 194 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 699999999999887754 699999999764
No 84
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.96 E-value=9.1e-29 Score=185.85 Aligned_cols=143 Identities=27% Similarity=0.367 Sum_probs=105.6
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ce
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KL 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~ 71 (158)
.+++.+.++ ++.|++ .++++|+||+|++||+++|+||||||||||+++|++.... ..
T Consensus 5 ~~~i~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 5 SPLLQLQNV-GYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred CceEEEecc-EEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 356777666 888864 3589999999999999999999999999999999964210 01
Q ss_pred eeeccccch-------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 72 RIGRHSRHL-------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 72 ~~~~~~~~~-------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
.+++.++.. .+.+. ..+++.++++.+++.....++++.+|||||+||++||++++.
T Consensus 82 ~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 82 QVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred ccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 123332221 11111 123456788999996322335779999999999999988775
Q ss_pred -----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||.++
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~ 200 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE 200 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH
Confidence 69999999998888764 5699999999864
No 85
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=4.1e-29 Score=208.18 Aligned_cols=142 Identities=26% Similarity=0.431 Sum_probs=109.5
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch---
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL--- 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~--- 80 (158)
+++.+.++ ++.|++. .+|+++||+|++|++++|+||||||||||+++|++...+ ...+++.++..
T Consensus 318 ~~l~~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENL-TKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEee-EEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 46776666 8888653 489999999999999999999999999999999975321 12345544431
Q ss_pred -------hhHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538 81 -------EDLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134 (158)
Q Consensus 81 -------~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~ 134 (158)
.+.+. ..+++.++++.+++.....++++.+||||||||++||++++. +||+.+.
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 474 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESI 474 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 11110 123567789999985322346789999999999999988764 7999999
Q ss_pred HHHHHHHhhcCCeEEEEeecCCC
Q 044538 135 VAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 135 ~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
..+.+.+++++.|||+||||.++
T Consensus 475 ~~l~~~l~~~~~tvi~vsHd~~~ 497 (530)
T PRK15064 475 ESLNMALEKYEGTLIFVSHDREF 497 (530)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHH
Confidence 99999999988899999999764
No 86
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=3.7e-29 Score=185.96 Aligned_cols=137 Identities=20% Similarity=0.321 Sum_probs=102.0
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------ceeeeccccch
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------KLRIGRHSRHL 80 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------~~~~~~~~~~~ 80 (158)
+.++ ++.|+. ..+++++||++.+|++++|+||||||||||+++|++.... ...+++.++..
T Consensus 3 ~~~l-~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 3 VENV-TKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred EEEE-EEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 3344 788864 3589999999999999999999999999999999974321 11233333221
Q ss_pred --------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 81 --------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 81 --------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
.+.+ ...+.+.++++.+++..... +++.+||||||||++||++++. +
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-CcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 1111 01245677889999976544 5678999999999999988765 6
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||+.++..+.+.++++ +.|||++|||.++
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~ 190 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMEL 190 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 9999999999888765 4699999999753
No 87
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.7e-29 Score=208.46 Aligned_cols=140 Identities=21% Similarity=0.365 Sum_probs=106.1
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------eeeeccccch-----
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------LRIGRHSRHL----- 80 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------~~~~~~~~~~----- 80 (158)
+.+.++ +++|+. .++|+++||+|.+|++++|+||||||||||+++|++.... . ..+++.++..
T Consensus 2 l~i~~l-s~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANI-TMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEE-EEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 455555 888864 3589999999999999999999999999999999975321 1 1234333211
Q ss_pred ---hhHh--------------------------------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCCh
Q 044538 81 ---EDLL--------------------------------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSG 113 (158)
Q Consensus 81 ---~~~~--------------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 113 (158)
.+.. ...+++.++++.+|++....++++.+|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 0000 01234667889999975433356799999
Q ss_pred HHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 114 GQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 114 Gqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
||||||+||++++. +||+.++.++.+.+.+.+.|||+||||+++
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~ 214 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHF 214 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 99999999988775 799999999999998888899999999764
No 88
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=8.2e-29 Score=190.25 Aligned_cols=144 Identities=23% Similarity=0.376 Sum_probs=107.1
Q ss_pred CCchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------
Q 044538 10 STSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------- 69 (158)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------- 69 (158)
-+++++.+.++ ++.|++ ..+|+++||+|++|++++|+||||||||||+++|++....
T Consensus 7 ~~~~~l~i~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 83 (265)
T PRK10575 7 HSDTTFALRNV-SFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 (265)
T ss_pred CCCceEEEeeE-EEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHH
Confidence 34467777776 888864 3589999999999999999999999999999999964210
Q ss_pred ceeeeccccc--------hhhHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 70 KLRIGRHSRH--------LEDLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 70 ~~~~~~~~~~--------~~~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
...+++.++. ..+.+. ..+++.++++.+++..... +++.+|||||+||++||+++
T Consensus 84 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral 162 (265)
T PRK10575 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH-RLVDSLSGGERQRAWIAMLV 162 (265)
T ss_pred hhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCCHHHHHHHHHHHHH
Confidence 0113333321 011110 1234677889999976444 56789999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+. +||+.+...+.+.+.++ +.|||++|||+++
T Consensus 163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~ 210 (265)
T PRK10575 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM 210 (265)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 75 69999999888888654 5799999999764
No 89
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.96 E-value=4.2e-29 Score=185.39 Aligned_cols=137 Identities=19% Similarity=0.235 Sum_probs=102.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ +++|++ .++++++||++++|++++|+||||||||||+++|++.... ...+++.++
T Consensus 3 ~~~l-~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDL-TKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEE-EEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 3444 888864 3589999999999999999999999999999999964211 011333332
Q ss_pred ch--h------hHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 79 HL--E------DLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 79 ~~--~------~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.. . +.+. ..+++.++++.+++..... +++.+||||||||++||++++. +||
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 21 1 1110 1245677889999976544 5678999999999999988775 699
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 131 TQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+.++..+.+.+++. +.|+|++|||+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~~ 188 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLSE 188 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 99999999888764 4799999999764
No 90
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=9.1e-29 Score=191.71 Aligned_cols=142 Identities=24% Similarity=0.346 Sum_probs=106.9
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------c
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------K 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~ 70 (158)
+++.+.++ ++.|+.+ ..+++++||+|.+||+++|+||||||||||+++|++.... +
T Consensus 4 ~~l~~~~l-~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEEL-NYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeE-EEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 46777666 9999632 3589999999999999999999999999999999964210 0
Q ss_pred eeeeccccchh---------hHh---------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 71 LRIGRHSRHLE---------DLL---------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 71 ~~~~~~~~~~~---------~~~---------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
..+++.++... +.+ . ..+++.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LS~G~~qrl~laraL~~~p 160 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-KPTHCLSFGQKKRVAIAGVLVMEP 160 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-CCcccCCHHHHHHHHHHHHHHcCC
Confidence 12444433210 000 0 1245677889999976554 6779999999999999998875
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~ 204 (283)
T PRK13636 161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDI 204 (283)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 69999999888887654 5799999999764
No 91
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.96 E-value=1e-28 Score=186.66 Aligned_cols=139 Identities=27% Similarity=0.381 Sum_probs=103.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------eeeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------LRIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------~~~~~ 75 (158)
+.+.++ +++|++ ..+|+++||+|.+|++++|+||||||||||+++|++.... . ..+++
T Consensus 2 l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGL-SFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEee-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 344555 888864 3589999999999999999999999999999999964211 0 01333
Q ss_pred cccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.++.. .+.+. ..+.+.++++.+|+....+ +++.+|||||+||++||++++.
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERAD-DKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 32211 01110 1234667889999976554 5678999999999999998775
Q ss_pred ----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||+++
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 195 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE 195 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh
Confidence 69999999999888654 4699999999875
No 92
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=7.2e-29 Score=177.69 Aligned_cols=136 Identities=30% Similarity=0.400 Sum_probs=98.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---ee---------------eecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LR---------------IGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~---------------~~~~ 76 (158)
+.+.++ .+.|+.. + =.++++|++||+++|+||||||||||+++++|...+. +. ++..
T Consensus 2 l~L~~V-~~~y~~~--~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDV-RFSYGHL--P--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccce-EEeeCcc--e--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 344444 7777543 2 2689999999999999999999999999999753211 11 1111
Q ss_pred cc--chhhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 77 SR--HLEDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 77 ~~--~~~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
+| +++..++ ..++++.++.++|+.+... +.+.+|||||||||++||.++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~-RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhh-hCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 11 1111111 1367888999999998776 4558999999999999988765
Q ss_pred ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
.|||.-+.++..++.+. +.|++||||..+
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 59998888888777554 479999999875
No 93
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=5.5e-29 Score=191.79 Aligned_cols=140 Identities=24% Similarity=0.331 Sum_probs=103.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ce
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KL 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~ 71 (158)
|+.+.++ ++.|++ ..+|+++||+|.+|++++|+||||||||||+++|++.... +.
T Consensus 1 ml~~~~l-~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDL-WFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEE-EEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 3455555 888864 3589999999999999999999999999999999863210 01
Q ss_pred eeeccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 72 RIGRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 72 ~~~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
.+++.++.. .+.+. ..+.+.++++.+++.+... +++.+||||||||++||++++.
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-QPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-CCchhCCHHHHHHHHHHHHHHcCCC
Confidence 234433321 00000 1134556888899876544 5678999999999999988775
Q ss_pred ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~ 198 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDL 198 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999888765 4699999999754
No 94
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.1e-28 Score=190.81 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=103.3
Q ss_pred hhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 15 LQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
+.+.++ ++.|++.. .++|+++||+|++|++++|+||||||||||+++|++....
T Consensus 3 l~~~~l-~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNV-SYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEE-EEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 445555 88886432 3589999999999999999999999999999999864210
Q ss_pred --ceeeeccccch----h-----hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 --KLRIGRHSRHL----E-----DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 --~~~~~~~~~~~----~-----~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
+..+++.++.. . +.+. ..+.+.++++.+++.....++++.+||||||||++||++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 01234443321 0 1000 11235567888999643334577999999999999998877
Q ss_pred h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~ 207 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDD 207 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 5 69999999999988765 4799999999753
No 95
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.96 E-value=6.2e-29 Score=190.94 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=104.0
Q ss_pred hhhhheeeeEEcCCC-------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------
Q 044538 14 MLQLIEVISFSYPNL-------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------- 69 (158)
|+.+.++ ++.|+.. ...+|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 2 ~l~~~~l-~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~ 80 (265)
T TIGR02769 2 LLEVRDV-THTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDR 80 (265)
T ss_pred eEEEEeE-EEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCH
Confidence 3455555 8888631 24689999999999999999999999999999999864210
Q ss_pred ------ceeeeccccch----h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538 70 ------KLRIGRHSRHL----E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 70 ------~~~~~~~~~~~----~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 120 (158)
+..+++.++.. . +.+ ...+++.++++.+++.....++++.+||||||||++
T Consensus 81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence 01244433321 0 000 012356778899999633333567899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 213 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL 213 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 9998875 69999998888888654 5799999999754
No 96
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.1e-29 Score=192.10 Aligned_cols=141 Identities=22% Similarity=0.302 Sum_probs=102.7
Q ss_pred hhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-c--c--------------------
Q 044538 16 QLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-Q--K-------------------- 70 (158)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-~--~-------------------- 70 (158)
++.|+ ++.|... ...+++||||++++||++||+|+|||||||+.+.|++... . .
T Consensus 3 ~v~nL-~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 3 EVKNL-SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred eEeee-EEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 44454 7777542 3468999999999999999999999999999999885332 1 0
Q ss_pred ------eeeeccccchhhH----h--------------------hHHHHHHHHHHHcCCCCC--CCCCCCCCCChHHHHH
Q 044538 71 ------LRIGRHSRHLEDL----L--------------------TMEEAVHAKLRKFGLPGH--NHLTPIANLSGGQKVR 118 (158)
Q Consensus 71 ------~~~~~~~~~~~~~----~--------------------~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqr 118 (158)
..+++.+|+.... + ...+++.++|+.+|+++. ..+.++++|||||+||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 0133333331110 0 012457788999999864 2345679999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|.||.|++. +||...+.+++++|+++ +.++|+||||+..
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v 216 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV 216 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999988765 59999888888887654 5799999999864
No 97
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=5.9e-29 Score=211.04 Aligned_cols=143 Identities=25% Similarity=0.452 Sum_probs=109.9
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL-- 80 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~-- 80 (158)
.+++.+.++ ++.|+. .++|+++||+|.+|++++|+||||||||||+++|++...+ ...++++++..
T Consensus 317 ~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENV-NYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeee-EEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 456776666 888865 3589999999999999999999999999999999975321 22355554421
Q ss_pred -------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 81 -------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 81 -------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
.+.+. ....+..++..+++......+++.+|||||||||+||++++. +||+
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 11110 023456778888886433346789999999999999988764 7999
Q ss_pred HHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 132 QSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
.+...+.+.+++++.|||+||||.++
T Consensus 474 ~~~~~l~~~l~~~~~tvi~vSHd~~~ 499 (635)
T PRK11147 474 ETLELLEELLDSYQGTVLLVSHDRQF 499 (635)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 99999999999988899999999764
No 98
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.96 E-value=1.2e-28 Score=188.69 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=104.6
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------c------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------K------------ 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~------------ 70 (158)
+++.+.++ ++.|++ ..+++++||+|++|++++|+||||||||||+++|++.... .
T Consensus 5 ~~l~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 5 PLLSVRGL-TKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred ceEEEeee-EEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 46777666 888865 3589999999999999999999999999999999964210 0
Q ss_pred -------eeeeccccchh----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538 71 -------LRIGRHSRHLE----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 71 -------~~~~~~~~~~~----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 120 (158)
..+++.++... +.. ...+.+.++++.+++.....++++.+|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~ 161 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQ 161 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHH
Confidence 01344333210 000 012345678889999642223567999999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.+++. +.|||++|||.++
T Consensus 162 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~ 214 (258)
T PRK11701 162 IARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV 214 (258)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 9998775 69999999998887653 5799999999764
No 99
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.96 E-value=7.4e-29 Score=186.18 Aligned_cols=142 Identities=23% Similarity=0.296 Sum_probs=100.8
Q ss_pred hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538 15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------- 69 (158)
+.+.++ ++.|+... .++++++||+|++|++++|+||||||||||+++|++....
T Consensus 2 l~~~~v-~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNL-SVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEee-eEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 344555 88886431 2589999999999999999999999999999999864210
Q ss_pred ceeeeccccch----h------hHhh----------HH---HH-HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 70 KLRIGRHSRHL----E------DLLT----------ME---EA-VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 70 ~~~~~~~~~~~----~------~~~~----------~~---~~-~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
+..+++.++.. . +.+. .. +. +.++++.+++.....++++.+||||||||++||+++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 01234333321 0 1100 00 11 136778888853222356789999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 75 69999999999888664 5799999999753
No 100
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.96 E-value=1.4e-28 Score=184.75 Aligned_cols=138 Identities=26% Similarity=0.356 Sum_probs=102.2
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh-----hcc---e-----------------
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR-----RQK---L----------------- 71 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~-----~~~---~----------------- 71 (158)
+.++ ++.|+.. ++|+++||+|.+||+++|+||||||||||+++|++.. ... +
T Consensus 3 ~~~l-~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 3 LRDL-NVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred EEEE-EEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 3444 8888653 5899999999999999999999999999999999865 210 0
Q ss_pred --eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCC-CCCCChHHHHHHHHHHHHhh-
Q 044538 72 --RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTP-IANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 72 --~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~-~~~LSgGqkqrv~ia~~~l~- 127 (158)
.+++.++.. .+.+. ..+++.++++.+++.......+ +.+||||||||++||++++.
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 123322221 01100 1234567889999976544333 58999999999999988775
Q ss_pred -----------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++.. .|||++|||+++
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 202 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQ 202 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHH
Confidence 699999999999987764 599999999764
No 101
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=211.18 Aligned_cols=140 Identities=24% Similarity=0.399 Sum_probs=105.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccc------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRH------ 79 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~------ 79 (158)
+.+.++ +++|+.. .+|+|+||+|.+|++++|+||||||||||+++|++.... ...+++..+.
T Consensus 2 i~i~nl-s~~~g~~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSL-QIRRGVR--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEE-EEEeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 455555 8888653 589999999999999999999999999999999975321 1112222110
Q ss_pred -----hhh------Hh-----------------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538 80 -----LED------LL-----------------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV 119 (158)
Q Consensus 80 -----~~~------~~-----------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 119 (158)
... .+ ....++..+++.+|+.....++++.+|||||||||
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv 158 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRL 158 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHH
Confidence 000 00 01235667788999963333467899999999999
Q ss_pred HHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 120 MFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+||++++. +||+.+..++.+.|++++.|||+||||+++
T Consensus 159 ~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~ 208 (638)
T PRK10636 159 NLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDF 208 (638)
T ss_pred HHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 99988774 799999999999999998999999999865
No 102
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.96 E-value=7.8e-29 Score=206.50 Aligned_cols=145 Identities=20% Similarity=0.310 Sum_probs=108.2
Q ss_pred chhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------c-----------
Q 044538 12 SPMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------K----------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~----------- 70 (158)
.||+++.++ ++.|+.. ...+|+++||+|.+||+++|+||||||||||+++|++.... .
T Consensus 3 ~~~l~~~~l-~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 3 QPLLAIENL-SVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred CceEEEece-EEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 357777776 9999632 23589999999999999999999999999999999875321 0
Q ss_pred ----------eeeeccccch----hhHh-------------------hHHHHHHHHHHHcCCCCCC--CCCCCCCCChHH
Q 044538 71 ----------LRIGRHSRHL----EDLL-------------------TMEEAVHAKLRKFGLPGHN--HLTPIANLSGGQ 115 (158)
Q Consensus 71 ----------~~~~~~~~~~----~~~~-------------------~~~~~~~~~l~~~~l~~~~--~~~~~~~LSgGq 115 (158)
..+++.+|.. .+.. ...+++.++++.+++.+.. .++++.+|||||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe 161 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE 161 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence 1244444331 0000 0124567789999997521 235679999999
Q ss_pred HHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 116 KVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 116 kqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||||+||++++. +||+.+..++.+.++++ +.|||+||||+++
T Consensus 162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~ 219 (529)
T PRK15134 162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI 219 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHH
Confidence 999999998875 69999999999888763 5799999999864
No 103
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.96 E-value=9.1e-29 Score=196.83 Aligned_cols=139 Identities=26% Similarity=0.340 Sum_probs=104.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+.+.++ ++.|++ ..+++++||+|.+||+++|+||||||||||+++|++.... ...+++.
T Consensus 3 L~i~~l-~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v 79 (353)
T PRK10851 3 IEIANI-KKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFV 79 (353)
T ss_pred EEEEEE-EEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEE
Confidence 444455 888865 3589999999999999999999999999999999964211 1124443
Q ss_pred ccch--h------hHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 77 SRHL--E------DLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 77 ~~~~--~------~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
+|.. . +++ ...+++.++++.+++++..+ +++.+|||||||||+||++++.
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-RYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 3321 0 000 01246778899999987655 5679999999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.+++. +.|+|+||||+++
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~e 199 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE 199 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999998888887654 5799999999864
No 104
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=4.1e-29 Score=206.63 Aligned_cols=139 Identities=32% Similarity=0.480 Sum_probs=108.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---------cceeeeccccchhhH-
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------QKLRIGRHSRHLEDL- 83 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------~~~~~~~~~~~~~~~- 83 (158)
++.+.++ ++.|+. +++|+++||+|.+|+++||||+||||||||+++|++... ...++++..|.....
T Consensus 3 ~i~~~~l-s~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENL-SLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeee-EEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 4555555 888854 358999999999999999999999999999999997532 223455554431100
Q ss_pred -------------------------------------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChH
Q 044538 84 -------------------------------------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGG 114 (158)
Q Consensus 84 -------------------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 114 (158)
++.+.++..++..+|++.. .+++++||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG 157 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGG 157 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHH
Confidence 0012345667777888765 4788999999
Q ss_pred HHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 115 QKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 115 qkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
||.||+||++++. |||..++.++.+.|.++.+|+|+||||.+|
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~F 212 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYF 212 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence 9999999988774 799999999999999998899999999876
No 105
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=188.44 Aligned_cols=143 Identities=21% Similarity=0.320 Sum_probs=106.4
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
++++.+.++ ++.|++ ..+++++||+|++|++++|+||||||||||+++|++....
T Consensus 3 ~~~l~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDL-HKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeee-EEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 346676666 899874 3589999999999999999999999999999999864210
Q ss_pred -----------ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538 70 -----------KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV 117 (158)
Q Consensus 70 -----------~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 117 (158)
...+++.++.. .+.+. ..+++.++++.+|+......+++.+|||||||
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~q 159 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQ 159 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHH
Confidence 01133332221 11110 12346678999999765323567899999999
Q ss_pred HHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
|++||++++. +||+.+...+.+.++++ +.|||+||||.++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~ 214 (257)
T PRK10619 160 RVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGF 214 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999998875 69999999999887664 5799999999764
No 106
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.96 E-value=1.2e-28 Score=186.69 Aligned_cols=138 Identities=22% Similarity=0.324 Sum_probs=100.2
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---h--cc------------------eee
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---R--QK------------------LRI 73 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~--~~------------------~~~ 73 (158)
+.++ ++.|++ ..+|+|+||+|++|++++|+||||||||||+++|++.. . .. ..+
T Consensus 3 ~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 3 IKDL-HVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred EeeE-EEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 3444 888864 35899999999999999999999999999999999862 1 00 012
Q ss_pred eccccch--------hhHh----------------h---HHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHHHHHHH
Q 044538 74 GRHSRHL--------EDLL----------------T---MEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVMFTLVS 125 (158)
Q Consensus 74 ~~~~~~~--------~~~~----------------~---~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ia~~~ 125 (158)
++.++.. .+.+ . ..+++.++++.++++....++++. +||||||||++||+++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 3322221 0000 0 023456788889997432334555 5999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~ 206 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206 (243)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHH
Confidence 75 69999999999988776 4699999999764
No 107
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-28 Score=189.32 Aligned_cols=140 Identities=26% Similarity=0.418 Sum_probs=104.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------cee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLR 72 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~ 72 (158)
+.+.++ ++.|++. ..+++++||+|.+||+++|+||||||||||+++|++.... ...
T Consensus 2 l~~~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDL-KYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEE-EEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 445555 8888643 3589999999999999999999999999999999864210 011
Q ss_pred eeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++... +.+. ..+++.++++.+++.+..+ +++.+|||||+||++||++++.
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-KPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 344333310 0000 1235667889999976554 5779999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~ 199 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL 199 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 69999999999888765 4799999999764
No 108
>PRK10908 cell division protein FtsE; Provisional
Probab=99.96 E-value=1.6e-28 Score=183.99 Aligned_cols=140 Identities=26% Similarity=0.321 Sum_probs=102.5
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------ce
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------KL 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~~ 71 (158)
+.+.++ ++.|+.. ..+++++||+|++|++++|+||||||||||+++|++.... +.
T Consensus 2 l~~~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHV-SKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEee-EEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 445555 8888432 3589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 72 RIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.+++.++.. .+.+. ..+.+.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 158 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-NFPIQLSGGEQQRVGIARAVVNKPAV 158 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 133332221 01110 1124567889999976544 5678999999999999988775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999888888765 4799999999764
No 109
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=1.3e-28 Score=185.67 Aligned_cols=141 Identities=27% Similarity=0.368 Sum_probs=103.5
Q ss_pred hhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------
Q 044538 15 LQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------- 69 (158)
+.+.++ ++.|++.. .++++++||+|++|++++|+||||||||||+++|++....
T Consensus 2 i~~~~l-~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNV-SKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecc-eEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 445555 88886531 2589999999999999999999999999999999864210
Q ss_pred ceeeeccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 70 KLRIGRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 70 ~~~~~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
...+++.++.. .+.+. ..+.+.++++.+++.+... +++.+|||||+||++||++++.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-AYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-cChhhCCHHHHHHHHHHHHHhcCC
Confidence 01133332221 11110 1234667889999976544 5678999999999999988775
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||.++
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~ 203 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEV 203 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999888654 5699999999754
No 110
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.4e-28 Score=189.87 Aligned_cols=140 Identities=29% Similarity=0.395 Sum_probs=103.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~ 73 (158)
+.+.++ ++.|+.. ..+|+|+||+|++|++++|+||||||||||+++|++.... ...+
T Consensus 2 l~~~~l-~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENV-SYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEE-EEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 445555 8888543 3489999999999999999999999999999999964210 0113
Q ss_pred eccccchh---------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 74 GRHSRHLE---------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 74 ~~~~~~~~---------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.++... +.+ ...+.+.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-RSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 33333210 100 01245667889999976544 5679999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||++|||+++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~ 198 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE 198 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 69999999999888654 4799999999764
No 111
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.96 E-value=1.1e-28 Score=196.76 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=97.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccccch-----
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHSRHL----- 80 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~~~~----- 80 (158)
+.+++|+||+|++||+++|+||||||||||+++|++.... +..+++.+|..
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 3589999999999999999999999999999999853210 12344443321
Q ss_pred ---hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538 81 ---EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS 133 (158)
Q Consensus 81 ---~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~ 133 (158)
.++. ...+++.++++.++++.... +++.+|||||||||+||+|++. +||+..
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~-~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~ 164 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEH-RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLI 164 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 1111 11355778899999987655 5679999999999999998775 699999
Q ss_pred HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 134 IVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 134 ~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+..+.+.+.+. +.|||+||||+++
T Consensus 165 r~~l~~~l~~l~~~~~~Tii~vTHd~~e 192 (363)
T TIGR01186 165 RDSMQDELKKLQATLQKTIVFITHDLDE 192 (363)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99998887643 5799999999864
No 112
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.96 E-value=1.1e-28 Score=186.36 Aligned_cols=137 Identities=25% Similarity=0.348 Sum_probs=101.9
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR 75 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~ 75 (158)
+.++ ++.|+. ..+|+++||+|++|++++|+||||||||||+++|++.... +..+++
T Consensus 3 ~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 3 VRGL-TKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred eeee-EEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 3444 888864 3589999999999999999999999999999999864210 011333
Q ss_pred cccch--------hhHh----------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 044538 76 HSRHL--------EDLL----------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 76 ~~~~~--------~~~~----------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
.++.. .+.+ ...+.+.++++.+++..... +++.+||||||||++||+++
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al 158 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD-RPAGELSYGQQRRLEIARAL 158 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh-CChhhCCHHHHHHHHHHHHH
Confidence 33221 0100 01234667889999976544 56799999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 205 (236)
T cd03219 159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDV 205 (236)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 75 69999999999988764 4799999999764
No 113
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.96 E-value=1.1e-28 Score=183.65 Aligned_cols=137 Identities=24% Similarity=0.370 Sum_probs=101.5
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------ceeee
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLRIG 74 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~~~ 74 (158)
+.++ ++.|+. ..+++++||++++|++++|+||||||||||+++|++.... ...++
T Consensus 3 ~~~l-~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNL-HKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEE-EEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 3444 888865 3589999999999999999999999999999999964211 01123
Q ss_pred ccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 75 RHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 75 ~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
+.++.. .+.. ...+++.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 158 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-AYPAQLSGGQQQRVAIARALAMNPKVML 158 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-hCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence 322211 0111 01234567888999976544 5678999999999999988775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~ 197 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGF 197 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999888765 4699999999754
No 114
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.96 E-value=1e-28 Score=192.97 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=96.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccccch--------hhH
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHSRHL--------EDL 83 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~~~~--------~~~ 83 (158)
.+|+++||+|++|++++|+||||||||||+++|++.... +..+++.++.. .+.
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 589999999999999999999999999999999964211 01234433321 011
Q ss_pred hh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHH
Q 044538 84 LT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAV 139 (158)
Q Consensus 84 ~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~ 139 (158)
+. ..+++.++++.+++..... +++.+||||||||++||++++. +||+.++..+++
T Consensus 87 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 87 LEMMGRLYGLPKDEAEERAEELLELFELGEAAD-RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 10 1235677899999976544 5779999999999999998775 799999999999
Q ss_pred HHhhc---CCeEEEEeecCCC
Q 044538 140 TLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 140 ~l~~~---~~tvi~vtHd~~~ 157 (158)
.++++ +.|||++|||+++
T Consensus 166 ~l~~~~~~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 166 YIRALKEEGVTILLTTHYMEE 186 (302)
T ss_pred HHHHHHhCCCEEEEECCCHHH
Confidence 88765 4799999999864
No 115
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.96 E-value=1.1e-28 Score=206.42 Aligned_cols=143 Identities=23% Similarity=0.415 Sum_probs=109.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL-- 80 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~-- 80 (158)
++++.+.++ ++.|++. .+|+++||+|.+|++++|+||||||||||+++|++.... ...+++.++..
T Consensus 320 ~~~l~~~~l-~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 396 (552)
T TIGR03719 320 DKVIEAENL-SKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396 (552)
T ss_pred CeEEEEeeE-EEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence 457777666 8888653 589999999999999999999999999999999975321 12355554431
Q ss_pred -hhHhhH----------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 81 -EDLLTM----------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 81 -~~~~~~----------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
.+..+. .....++++.+++.....++++.+|||||||||+||++++. +||+
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 110010 12345688999996433345779999999999999988765 7999
Q ss_pred HHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 132 QSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
.+...+.+.+++++.|||+||||+++
T Consensus 477 ~~~~~l~~~l~~~~~~viivsHd~~~ 502 (552)
T TIGR03719 477 ETLRALEEALLEFAGCAVVISHDRWF 502 (552)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 99999999999987899999999864
No 116
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.96 E-value=1.6e-28 Score=186.09 Aligned_cols=140 Identities=25% Similarity=0.365 Sum_probs=104.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~ 72 (158)
++.+.++ ++.|++ .++++++||++++|++++|+||||||||||+++|++.... ...
T Consensus 2 ~i~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGL-SVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEee-EEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4555565 888865 3589999999999999999999999999999999964210 011
Q ss_pred eeccccch--------hhHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538 73 IGRHSRHL--------EDLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 73 ~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
+++.++.. .+.+ ...+++.++++.+++.+..+ +++.+|||||+||++||++
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEAD-RLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHH
Confidence 33322210 1100 01235677889999976544 5678999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
++. +||+.++..+.+.++++. .|||++|||+++
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 204 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEF 204 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 775 699999999999988753 699999999764
No 117
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.96 E-value=1.3e-28 Score=187.51 Aligned_cols=140 Identities=22% Similarity=0.372 Sum_probs=103.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------ 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------ 69 (158)
|+.+.++ ++.|++. .+++|+||+|++|++++|+||||||||||+++|++....
T Consensus 3 ~l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNL-VKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEece-EEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5666666 8888643 589999999999999999999999999999999864210
Q ss_pred ----ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538 70 ----KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 70 ----~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
+..+++.++.. .+.+. ..+.+.++++.+++....+ +++.+||||||||++||++
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKET-SYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-CChhhCChHHHHHHHHHHH
Confidence 01133322211 11110 1234567888999976544 5679999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
++. +||+.++..+.+.++++ +.|||++|||.++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~ 206 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSF 206 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 775 69999999999888654 5799999999753
No 118
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.3e-28 Score=189.97 Aligned_cols=143 Identities=20% Similarity=0.233 Sum_probs=103.5
Q ss_pred hhhhheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538 14 MLQLIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------- 69 (158)
.+.+.++ +++|+... ..+|+++||+|++|++++|+||||||||||+++|++....
T Consensus 6 ~l~i~nl-~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 6 DIILDNV-SYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred eEEEEEE-EEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4566666 88887532 2489999999999999999999999999999999863210
Q ss_pred ----ceeeeccccch----hh-----Hhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538 70 ----KLRIGRHSRHL----ED-----LLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 70 ----~~~~~~~~~~~----~~-----~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
+..+++.++.. .. .+. ..+.+.++++.++++....++++.+||||||||++||++
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 01234433321 00 000 013355678889995322345779999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
++. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~ 213 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 213 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 875 69999999998887654 5799999999753
No 119
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.96 E-value=1.3e-28 Score=192.34 Aligned_cols=139 Identities=22% Similarity=0.342 Sum_probs=105.3
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~ 75 (158)
+.+.++ +++|++ ..+|+|+||++++||+++|+||||||||||+++|++.... +..+++
T Consensus 3 l~~~~l-~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSL-TKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEE-EEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 344455 888864 3589999999999999999999999999999999964211 012344
Q ss_pred cccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.++.. .+.+. ..+++.++++.+++.+..+ +++..||||||||++||++++.
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-KKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 33321 11110 1245677899999987654 5679999999999999988775
Q ss_pred ----CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.++++ +.|||++||++++
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~ 194 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQE 194 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 69999999999998876 4799999999864
No 120
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.96 E-value=1.9e-28 Score=181.95 Aligned_cols=140 Identities=23% Similarity=0.290 Sum_probs=104.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce--------------eeecc
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL--------------RIGRH 76 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~--------------~~~~~ 76 (158)
|+.+.++ ++.|++. .+++++||+|++||+++|+||||||||||+++|++.... .+ .+++.
T Consensus 2 ~l~~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDL-ACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEEeE-EEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 3455555 8888653 589999999999999999999999999999999964321 00 12222
Q ss_pred ccc--------hhhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 77 SRH--------LEDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 77 ~~~--------~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
++. ..+.+. ..+.+.++++.+++.... ++++.+|||||+||++||++++. +
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 211 011110 123467789999997643 46778999999999999988775 6
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||+.+...+.+.++++ +.|+|++|||.++
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 9999999999888765 5799999999875
No 121
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.9e-28 Score=205.21 Aligned_cols=142 Identities=22% Similarity=0.373 Sum_probs=108.4
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL-- 80 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~-- 80 (158)
.+|+++.++ ++.|++. .++|+|+||+|++|++++|+||||||||||+++|++.... ...+++.+|..
T Consensus 4 ~~~l~i~~l-~~~y~~~-~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~ 81 (556)
T PRK11819 4 QYIYTMNRV-SKVVPPK-KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQL 81 (556)
T ss_pred cEEEEEeeE-EEEeCCC-CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC
Confidence 457777776 9999722 3589999999999999999999999999999999975321 12345444321
Q ss_pred ------hhHhh------------------------------------------------HHHHHHHHHHHcCCCCCCCCC
Q 044538 81 ------EDLLT------------------------------------------------MEEAVHAKLRKFGLPGHNHLT 106 (158)
Q Consensus 81 ------~~~~~------------------------------------------------~~~~~~~~l~~~~l~~~~~~~ 106 (158)
.+.+. ..+++.++++.+|++. . ++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-W-DA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-c-cC
Confidence 00000 0123456778888853 3 46
Q ss_pred CCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 107 PIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 107 ~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
++.+|||||||||+||++++. +||+.+..++.+.++++..|||+||||+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~ 222 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYF 222 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 789999999999999988775 799999999999999988899999999864
No 122
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=201.69 Aligned_cols=144 Identities=22% Similarity=0.316 Sum_probs=108.2
Q ss_pred hhhhhheeeeEEcCCCC--CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538 13 PMLQLIEVISFSYPNLQ--DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~--~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------- 70 (158)
+++++.|+ ++.|.... ..+++||||++.+||++||+|+|||||||+.+.+.+.....
T Consensus 4 ~lL~V~nL-~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 4 PLLEVENL-TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred ceEEEece-EEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 36666666 87776432 35899999999999999999999999999999998532111
Q ss_pred --------eeeeccccchhhH----h-------------------hHHHHHHHHHHHcCCCCCCCC-CCCCCCChHHHHH
Q 044538 71 --------LRIGRHSRHLEDL----L-------------------TMEEAVHAKLRKFGLPGHNHL-TPIANLSGGQKVR 118 (158)
Q Consensus 71 --------~~~~~~~~~~~~~----~-------------------~~~~~~~~~l~~~~l~~~~~~-~~~~~LSgGqkqr 118 (158)
..+++.+|..... + ...+++.++++.+++++.... +++++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 1234444432111 1 123567789999999876553 4679999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|.||+|++. .||+..+.++++.|+++ +.++|+||||++.
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V 217 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV 217 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH
Confidence 999998775 59999999999888654 5799999999864
No 123
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.96 E-value=1.6e-28 Score=187.35 Aligned_cols=142 Identities=23% Similarity=0.253 Sum_probs=104.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------c------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------K------------ 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~------------ 70 (158)
+++.+.++ ++.|+.. .+++|+||+|++|++++|+||||||||||+++|++.... .
T Consensus 2 ~~l~~~~l-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (253)
T TIGR02323 2 PLLQVSGL-SKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78 (253)
T ss_pred ceEEEeee-EEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHH
Confidence 46666666 8888653 479999999999999999999999999999999864210 0
Q ss_pred -------eeeeccccchh----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538 71 -------LRIGRHSRHLE----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 71 -------~~~~~~~~~~~----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 120 (158)
..+++.++... +.. ...+.+.++++.+++.....++++.+||||||||++
T Consensus 79 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~ 158 (253)
T TIGR02323 79 ERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQ 158 (253)
T ss_pred HHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHH
Confidence 01333332210 010 012455678899999632233567899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.+++. +.|+|+||||.++
T Consensus 159 laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 159 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9998775 79999999998887653 5799999999754
No 124
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.2e-28 Score=204.33 Aligned_cols=141 Identities=20% Similarity=0.243 Sum_probs=107.3
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----c-----------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----K----------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----~----------------- 70 (158)
+|+++.++ +++|++ ..+|+|+||+|++|++++|+||||||||||+++|++.... .
T Consensus 4 ~~l~~~nl-~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNI-TKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeee-EEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 56777776 899864 3589999999999999999999999999999999975331 0
Q ss_pred -eeeeccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 71 -LRIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 71 -~~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
..+++.+|.. .+.+ ...+++.++++.+++..... +++.+||||||||++||++++
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA-TPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHHHh
Confidence 1133333221 0000 01245678899999976544 677999999999999999877
Q ss_pred h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.+.++ +.|||+||||+++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~ 205 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNE 205 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 4 79999999999888665 4699999999764
No 125
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.4e-28 Score=210.43 Aligned_cols=143 Identities=39% Similarity=0.679 Sum_probs=110.5
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchhh-
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLED- 82 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~~- 82 (158)
+++.+.++ ++.|++.. .+|+++||+|.+|++++|+||||||||||+++|++...+ +..+++.+|....
T Consensus 507 ~~L~~~~l-s~~y~~~~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~ 584 (718)
T PLN03073 507 PIISFSDA-SFGYPGGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDG 584 (718)
T ss_pred ceEEEEee-EEEeCCCC-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccccc
Confidence 56776666 88886432 589999999999999999999999999999999975321 2235555443210
Q ss_pred -------Hh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538 83 -------LL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV 135 (158)
Q Consensus 83 -------~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~ 135 (158)
.. ...+.+..+++.+++......+++.+||||||||++||++++. +||+.+..
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~ 664 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVE 664 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence 00 0134567889999997433346789999999999999988774 79999999
Q ss_pred HHHHHHhhcCCeEEEEeecCCC
Q 044538 136 AVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 136 ~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
.+.+.+.++..|||+||||+++
T Consensus 665 ~l~~~L~~~~gtvIivSHd~~~ 686 (718)
T PLN03073 665 ALIQGLVLFQGGVLMVSHDEHL 686 (718)
T ss_pred HHHHHHHHcCCEEEEEECCHHH
Confidence 9999998877799999999764
No 126
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-28 Score=185.63 Aligned_cols=138 Identities=21% Similarity=0.296 Sum_probs=101.7
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeecc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRH 76 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~ 76 (158)
+.++ ++.|++. ..+|+++||+|++|++++|+||||||||||+++|++.... ...+++.
T Consensus 3 ~~~l-~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 3 FENV-TKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEE-EEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 3444 8888752 3589999999999999999999999999999999964211 0113333
Q ss_pred ccch--------hhHh------------hHHHHHHHHHHHcCCCC--CCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 77 SRHL--------EDLL------------TMEEAVHAKLRKFGLPG--HNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 77 ~~~~--------~~~~------------~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
++.. .+.+ ...+.+.++++.+++.. .. ++++.+|||||+||++||++++.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFA-DRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHH-hcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 3221 0111 01235677899999975 33 35678999999999999998775
Q ss_pred -----CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||.++
T Consensus 160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~ 198 (242)
T cd03295 160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198 (242)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHH
Confidence 69999999999888764 5799999999753
No 127
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.96 E-value=1.4e-28 Score=178.41 Aligned_cols=127 Identities=23% Similarity=0.277 Sum_probs=92.2
Q ss_pred CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeeccccchhh--HhhHHHHHHHHHHHcCCCCCCCC
Q 044538 28 LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRHSRHLED--LLTMEEAVHAKLRKFGLPGHNHL 105 (158)
Q Consensus 28 ~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~ 105 (158)
..+++|+|+||++++|++++|+||||||||||++++.+. .....+......... .....+ .++++.+++.....+
T Consensus 6 ~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~-~G~v~~~~~~~~~~~~~~~~~~q--~~~l~~~~L~~~~~~ 82 (176)
T cd03238 6 ANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA-SGKARLISFLPKFSRNKLIFIDQ--LQFLIDVGLGYLTLG 82 (176)
T ss_pred eeeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc-CCcEEECCcccccccccEEEEhH--HHHHHHcCCCccccC
Confidence 345689999999999999999999999999999998642 112222111000000 000111 468899999754234
Q ss_pred CCCCCCChHHHHHHHHHHHHhhC--------------CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 106 TPIANLSGGQKVRVMFTLVSMYH--------------LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l~~--------------lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+++.+||||||||++||++++.+ ||+.+...+.+.++++ +.|||++|||+++
T Consensus 83 ~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~ 151 (176)
T cd03238 83 QKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDV 151 (176)
T ss_pred CCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 56799999999999999988764 8899999888888764 5799999999753
No 128
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=2.8e-28 Score=188.41 Aligned_cols=141 Identities=23% Similarity=0.342 Sum_probs=104.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
++.+.++ ++.|+... .+|+++||++++||+++|+||||||||||+++|++.... ...+
T Consensus 3 ~l~~~~l-~~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDL-CYSYSGSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEE-EEEeCCCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 3555555 88886432 489999999999999999999999999999999964211 0013
Q ss_pred eccccch---------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 74 GRHSRHL---------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 74 ~~~~~~~---------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.++.. .+.+. ..+.+.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-RVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 3333221 01110 1134677889999976554 5678999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||+++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~ 200 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL 200 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 69999999998888653 5799999999764
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.96 E-value=1.8e-28 Score=187.15 Aligned_cols=141 Identities=22% Similarity=0.359 Sum_probs=104.3
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+++.+.++ ++.|++ .++|+++||++.+|++++|+||||||||||+++|++.... +.
T Consensus 4 ~~l~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGL-MMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeE-EEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 46777676 888864 3589999999999999999999999999999999964210 11
Q ss_pred eeeccccch--------hhHhh---------------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538 72 RIGRHSRHL--------EDLLT---------------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQK 116 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 116 (158)
.+++.++.. .+.+. ..+.+.++++.+++..... +++.+||||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~ 159 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN-RQAGNLAYGQQ 159 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhh-CChhhCCHHHH
Confidence 123222210 11000 0124566788899976544 56799999999
Q ss_pred HHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||++||++++. +||+.++..+.+.|.++ +.|||++|||+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~ 216 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKL 216 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence 99999998775 69999999998888653 5799999999754
No 130
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.6e-28 Score=205.72 Aligned_cols=143 Identities=23% Similarity=0.407 Sum_probs=109.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch--
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL-- 80 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~-- 80 (158)
++++.+.++ ++.|++. .+|+|+||+|.+|++++|+||||||||||+++|++.... ...+++.++..
T Consensus 322 ~~~l~~~~l-~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 398 (556)
T PRK11819 322 DKVIEAENL-SKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA 398 (556)
T ss_pred CeEEEEEeE-EEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence 457777666 8888653 589999999999999999999999999999999975321 12355555432
Q ss_pred -hhHhhH----------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 81 -EDLLTM----------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 81 -~~~~~~----------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
....+. ......+++.+++.....++++.+||||||||++||++++. +||+
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 110111 12345688999996433346779999999999999988764 7999
Q ss_pred HHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 132 QSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
.++..+.+.|.++..|||+||||+++
T Consensus 479 ~~~~~l~~~l~~~~~tvi~vtHd~~~ 504 (556)
T PRK11819 479 ETLRALEEALLEFPGCAVVISHDRWF 504 (556)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 99999999999987799999999764
No 131
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.8e-28 Score=207.62 Aligned_cols=148 Identities=19% Similarity=0.243 Sum_probs=108.6
Q ss_pred CCCchhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-------------
Q 044538 9 ESTSPMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------- 70 (158)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------- 70 (158)
-...+|+.+.++ ++.|+.. ..++++|+||+|++||+++|+||||||||||+++|++.... .
T Consensus 7 ~~~~~~l~v~~l-~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 7 LDARDVLAVENL-NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred CCCCceEEEece-EEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccc
Confidence 344568887777 9999632 23589999999999999999999999999999999864210 0
Q ss_pred ------------------eeeeccccch----hhHhh-------------------HHHHHHHHHHHcCCCCC--CCCCC
Q 044538 71 ------------------LRIGRHSRHL----EDLLT-------------------MEEAVHAKLRKFGLPGH--NHLTP 107 (158)
Q Consensus 71 ------------------~~~~~~~~~~----~~~~~-------------------~~~~~~~~l~~~~l~~~--~~~~~ 107 (158)
..+++.+|.. .+.++ ..+++.++++.+|+++. ..+++
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 165 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRY 165 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCC
Confidence 1244444421 11000 12456678999999641 22356
Q ss_pred CCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 108 IANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 108 ~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+.+|||||||||+||+|++. +||+.++..+++.++++ +.|||+||||+++
T Consensus 166 ~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~ 231 (623)
T PRK10261 166 PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGV 231 (623)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 79999999999999998875 69999988888877653 5799999999864
No 132
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.96 E-value=2e-28 Score=187.75 Aligned_cols=141 Identities=25% Similarity=0.359 Sum_probs=105.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------ce---------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------KL--------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------~~--------------- 71 (158)
+++.+.++ ++.|+. ..+++++||++.+||+++|+||||||||||+++|++.... .+
T Consensus 3 ~~l~~~nl-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~ 79 (262)
T PRK09984 3 TIIRVEKL-AKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79 (262)
T ss_pred cEEEEeeE-EEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch
Confidence 46777676 888864 3589999999999999999999999999999999975421 00
Q ss_pred -------eeeccccch--------hhHhh--------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538 72 -------RIGRHSRHL--------EDLLT--------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQK 116 (158)
Q Consensus 72 -------~~~~~~~~~--------~~~~~--------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 116 (158)
.+++.++.. .+.+. ..+++.++++.+++....+ +++.+||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~ 158 (262)
T PRK09984 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-QRVSTLSGGQQ 158 (262)
T ss_pred hHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-CCccccCHHHH
Confidence 123322210 00000 1235677889999975444 56789999999
Q ss_pred HHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||++||++++. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~ 215 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDY 215 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999988775 69999999999888764 4799999999864
No 133
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.4e-29 Score=182.16 Aligned_cols=141 Identities=26% Similarity=0.392 Sum_probs=102.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c--------------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-------------------- 70 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-------------------- 70 (158)
|+.+.++ +++|+.. .+++++|++|++|.+++++||||||||||+.+++...+. .
T Consensus 1 MI~i~nv-~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENV-SKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred Ceeehhh-hHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 4555666 8888754 589999999999999999999999999999998732110 0
Q ss_pred ------------------eeeeccccchh-hHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 71 ------------------LRIGRHSRHLE-DLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 71 ------------------~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
..+|+++..-. .....+..+.++++.+++.+..+ ++..+||||||||..||+.+..
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d-ryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD-RYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH-HhHHhcccchhhhhhhheeeeccCcE
Confidence 01222221100 01123466888999999987655 6789999999999999765442
Q ss_pred --------CCCHHHHHHHHHHHh----hcCCeEEEEeecCCCC
Q 044538 128 --------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSRLI 158 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~~~ 158 (158)
+||..-...+++.|+ +++.||++|-||.+|+
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA 199 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA 199 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH
Confidence 788777666666664 5678999999999874
No 134
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.1e-28 Score=203.81 Aligned_cols=140 Identities=21% Similarity=0.202 Sum_probs=105.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------ee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------RI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------~~ 73 (158)
|+.+.++ +++|+.. .+|+++||+|.+|++++|+||||||||||+++|++.... .+ .+
T Consensus 3 ~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQG-TFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeE-EEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4566666 8888653 489999999999999999999999999999999964211 00 12
Q ss_pred eccccchh-----h-----Hhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 GRHSRHLE-----D-----LLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ~~~~~~~~-----~-----~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
++.++... . ..+ ..+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLD-RRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22222110 0 011 1245678899999976544 6779999999999999998775
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++.++.+.++++ +.|||++|||+++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~ 197 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDE 197 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 79999999999998776 4699999999864
No 135
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.96 E-value=1.9e-28 Score=185.58 Aligned_cols=139 Identities=26% Similarity=0.375 Sum_probs=102.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------cee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------KLR 72 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------~~~ 72 (158)
+.+.++ ++.|++ ..+++|+||++++||+++|+||||||||||+++|++.... +..
T Consensus 2 l~~~~l-~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNV-SKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeE-EEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 445555 888864 3589999999999999999999999999999999964210 011
Q ss_pred eeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++.. .+.+ ...+.+.++++.++++...+ +++.+||||||||++||++++.
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-HYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-cChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 33332210 0110 01234567889999976544 5678999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||+++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 198 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGF 198 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999888654 5799999999764
No 136
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=2.6e-28 Score=202.57 Aligned_cols=142 Identities=20% Similarity=0.220 Sum_probs=108.0
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------c
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------K 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~ 70 (158)
.+++.+.++ ++.|++ ..+|+++||+|++|++++|+||||||||||+++|++.... +
T Consensus 9 ~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 9 PPLLCARSI-SKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred CceEEEEeE-EEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 356777666 888875 3589999999999999999999999999999999864211 0
Q ss_pred eeeeccccch--------hhHh--------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 71 LRIGRHSRHL--------EDLL--------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 71 ~~~~~~~~~~--------~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
..+++.++.. .+.+ ...+++.++++.+++....+ +++.+|||||||||+||++++.
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLD-SSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcccc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1234433321 1111 11345678899999986544 5779999999999999998775
Q ss_pred -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++.++.+.|+++ +.|||++|||+++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~ 202 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPE 202 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999988765 5799999999764
No 137
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.96 E-value=2.7e-28 Score=182.97 Aligned_cols=142 Identities=25% Similarity=0.363 Sum_probs=103.6
Q ss_pred hhhheeeeEEcCC----C-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------
Q 044538 15 LQLIEVISFSYPN----L-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K---------------- 70 (158)
Q Consensus 15 l~~~~~~~~~~~~----~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~---------------- 70 (158)
+.+.++ ++.|+. . ...+++|+||+|.+||+++|+||||||||||+++|++.... .
T Consensus 2 l~~~~l-~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 2 LEVEDL-SKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred EEEEee-EEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 445555 888853 1 13589999999999999999999999999999999864210 0
Q ss_pred ---------eeeeccccchh--------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Q 044538 71 ---------LRIGRHSRHLE--------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 71 ---------~~~~~~~~~~~--------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 121 (158)
..+++.++... +.+ ...+.+.++++.+++.....++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 11333333210 000 0124556788999997543345779999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.++++ +.|||++|||.++
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~ 211 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEV 211 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 998775 69999999999888764 5799999999753
No 138
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.5e-28 Score=188.29 Aligned_cols=141 Identities=24% Similarity=0.308 Sum_probs=105.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------ceeeecc
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------KLRIGRH 76 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------~~~~~~~ 76 (158)
++.+.++ ++.|+++ .++++|+||+|++|++++|+||||||||||+++|++.... ...+++.
T Consensus 6 ~l~~~~l-~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDV-TVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeE-EEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 4556565 8888633 3589999999999999999999999999999999964211 0124443
Q ss_pred ccch----------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 77 SRHL----------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 77 ~~~~----------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.. .+.. ...+.+.++++.+++.+... +++.+|||||+||++||++++.
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~laraL~~~p~ 162 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-RQIGELSGGQKKRVFLARAIAQQGQ 162 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-CCcccCCHHHHHHHHHHHHHhcCCC
Confidence 3221 0100 01234567889999976544 5779999999999999998775
Q ss_pred ---------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 163 llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~ 204 (272)
T PRK15056 163 VILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGS 204 (272)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 69999999999988765 4699999999753
No 139
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.96 E-value=2.7e-28 Score=177.53 Aligned_cols=135 Identities=30% Similarity=0.408 Sum_probs=98.2
Q ss_pred eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccch---h-hHh-hHHHHHHH
Q 044538 19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHL---E-DLL-TMEEAVHA 92 (158)
Q Consensus 19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~---~-~~~-~~~~~~~~ 92 (158)
++ ++.|+. ..+|+++||++.+|++++|+||||||||||+++|++..... ..+-...... . ... .....+.+
T Consensus 4 ~l-~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 4 NL-SVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred EE-EEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 44 788865 35899999999999999999999999999999999864321 1111111110 0 000 00111223
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
+++.+++.+... +++.+|||||+||++||++++. +||+.+...+.+.+.++ +.|+|++|||++
T Consensus 81 ~l~~~gl~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 81 ALELLGLAHLAD-RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred HHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 788899976544 5678999999999999988775 69999999998888654 469999999976
Q ss_pred C
Q 044538 157 L 157 (158)
Q Consensus 157 ~ 157 (158)
+
T Consensus 160 ~ 160 (180)
T cd03214 160 L 160 (180)
T ss_pred H
Confidence 4
No 140
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.96 E-value=5.6e-28 Score=178.97 Aligned_cols=133 Identities=27% Similarity=0.412 Sum_probs=100.3
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------c--------------eeeeccc
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------K--------------LRIGRHS 77 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------~--------------~~~~~~~ 77 (158)
++.|+. .++++++||++++||+++|+||||||||||+++|++.... . ..+++.+
T Consensus 5 ~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 82 (206)
T TIGR03608 5 SKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLF 82 (206)
T ss_pred EEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEe
Confidence 788864 3589999999999999999999999999999999964211 0 0133322
Q ss_pred cch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 78 RHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 78 ~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
+.. .+... ..+++.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 83 q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qr~~laral~~~p~llllDEP 161 (206)
T TIGR03608 83 QNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-QKIYELSGGEQQRVALARAILKDPPLILADEP 161 (206)
T ss_pred cchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 211 01110 1245677899999976544 5678999999999999988775
Q ss_pred --CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|+|++|||+++
T Consensus 162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 196 (206)
T TIGR03608 162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEV 196 (206)
T ss_pred cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999988765 4799999999753
No 141
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.96 E-value=2.4e-28 Score=183.98 Aligned_cols=136 Identities=21% Similarity=0.348 Sum_probs=100.8
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR 75 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~ 75 (158)
+.++ ++.|++. .+|+++||++.+|++++|+||||||||||+++|++.... +..+++
T Consensus 3 ~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENL-SKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEE-EEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 3444 8888643 589999999999999999999999999999999864210 012333
Q ss_pred cccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------
Q 044538 76 HSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 76 ~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.++.. .+.+. ..+++.++++.+++..... +++.+||||||||++||++++.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllD 158 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRK-SKASSLSGGERRRVEIARALATNPKFLLLD 158 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 33221 01100 1234567888999976544 5678999999999999988775
Q ss_pred ----CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 ----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||+.++..+.+.+++. +.|+|++|||++
T Consensus 159 EPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~ 194 (232)
T cd03218 159 EPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR 194 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 69999999988888654 469999999975
No 142
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.5e-28 Score=182.73 Aligned_cols=136 Identities=25% Similarity=0.346 Sum_probs=101.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS 77 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~ 77 (158)
+.++ ++.|++. ++++++||++++| +++|+||||||||||+++|++.... ...+++.+
T Consensus 3 ~~~~-~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENL-TKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEE-EEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 3444 8888653 5899999999999 9999999999999999999964210 01133333
Q ss_pred cch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 78 RHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 78 ~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
+.. .+.+. ..+.+.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEP 157 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-KKIGSLSGGMRRRVGIAQALVGDPSILIVDEP 157 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 221 11110 1234667889999976544 5678999999999999988775
Q ss_pred --CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||+++
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 191 (211)
T cd03264 158 TAGLDPEERIRFRNLLSELGEDRIVILSTHIVED 191 (211)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 69999999999999776 3799999999764
No 143
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.95 E-value=4.1e-28 Score=174.61 Aligned_cols=126 Identities=27% Similarity=0.250 Sum_probs=94.4
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh-hHhhH
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE-DLLTM 86 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~-~~~~~ 86 (158)
+.++ +++|+.. +++++++||++.+|++++|+||||||||||+++|++.... ...+++.++... ...+.
T Consensus 3 ~~~~-~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv 80 (166)
T cd03223 3 LENL-SLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTL 80 (166)
T ss_pred EEEE-EEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccH
Confidence 3444 8888643 3589999999999999999999999999999999976432 113445444321 11122
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeec
Q 044538 87 EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHD 154 (158)
Q Consensus 87 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd 154 (158)
.+.+ ... ++.+||||||||++||++++. +||+.+...+.+.+++++.|+|++|||
T Consensus 81 ~~nl----~~~---------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~ 147 (166)
T cd03223 81 REQL----IYP---------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHR 147 (166)
T ss_pred HHHh----hcc---------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 2222 110 347899999999999998775 699999999999999888899999999
Q ss_pred CCC
Q 044538 155 SRL 157 (158)
Q Consensus 155 ~~~ 157 (158)
.++
T Consensus 148 ~~~ 150 (166)
T cd03223 148 PSL 150 (166)
T ss_pred hhH
Confidence 753
No 144
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.95 E-value=6.6e-28 Score=178.33 Aligned_cols=136 Identities=25% Similarity=0.362 Sum_probs=101.8
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----------------eeeeccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----------------LRIGRHS 77 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----------------~~~~~~~ 77 (158)
+.++ ++.|+.. .+++++||+|++|++++|+|+||||||||+++|++.... . ..+++.+
T Consensus 3 i~~l-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADEL-TCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEE-EEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 3444 8888653 579999999999999999999999999999999964311 0 0123322
Q ss_pred cch--------hhHh------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 78 RHL--------EDLL------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 78 ~~~--------~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
+.. .+.. ...+++.++++.+++.+..+ +++.+||||||||++||++++. +||+
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 211 1111 01345677889999976544 5678999999999999998774 6999
Q ss_pred HHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 132 QSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 132 ~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
.+...+.+.+.++ +.|+|++|||..
T Consensus 159 ~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 159 AGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 9999999988765 579999999865
No 145
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.7e-28 Score=184.98 Aligned_cols=140 Identities=24% Similarity=0.307 Sum_probs=102.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+.+.++ +++|+. ..+++|+||+|.+|++++|+||||||||||+++|++.... +..++
T Consensus 4 l~~~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 4 IEFKEV-SYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred EEEEeE-EEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 445555 888864 3589999999999999999999999999999999964211 01133
Q ss_pred ccccch-------hhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 75 RHSRHL-------EDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
+.++.. .+.+. ..+++.++++.+++......+++.+||||||||++||++++.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 160 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS 160 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 333221 01110 123566788999996322335678999999999999988775
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|||++|||+++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~ 194 (241)
T PRK14250 161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 69999999988888653 5799999999864
No 146
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=2.9e-28 Score=186.21 Aligned_cols=140 Identities=24% Similarity=0.352 Sum_probs=103.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
|+.+.++ +++|+. ..+|+++||++++|++++|+||||||||||+++|++.... ...+
T Consensus 2 ~l~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENL-TVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeE-EEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 3455555 888864 3589999999999999999999999999999999964210 0113
Q ss_pred eccccch--------hhHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL--------EDLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.++.. .+... ..+.+.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-RRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-CCcccCCHHHHHHHHHHHHHhcCC
Confidence 3332210 01110 1234667888899976544 5678999999999999998775
Q ss_pred ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~ 200 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQ 200 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 69999999999888664 4799999999764
No 147
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=8.8e-28 Score=177.51 Aligned_cols=140 Identities=24% Similarity=0.320 Sum_probs=103.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~ 75 (158)
+.+.++ +++|+. .++++++||++++||+++|+||||||||||+++|++.... ...+++
T Consensus 2 l~~~~l-~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIEL-DFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEE-EEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 455555 888865 3589999999999999999999999999999999964311 001232
Q ss_pred cccch--------hhHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 76 HSRHL--------EDLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 76 ~~~~~--------~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
.++.. .+... ....+.++++.+++.... ++++.+|||||+||++||++++. +
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-DYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 22210 11111 123467788999987544 36778999999999999988775 6
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
||+.++..+.+.+++. +.|+|++|||.+++
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 190 (200)
T PRK13540 158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190 (200)
T ss_pred cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhc
Confidence 9999999999988764 57999999998753
No 148
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.95 E-value=6.5e-28 Score=177.89 Aligned_cols=135 Identities=24% Similarity=0.344 Sum_probs=100.8
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeecccc
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHSR 78 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~~ 78 (158)
.++ ++.|+. ..+++++||++.+|++++|+||||||||||+++|++.... ...+++.++
T Consensus 4 ~~l-~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 4 RNL-ACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEE-EEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 344 778864 3589999999999999999999999999999999964211 011233322
Q ss_pred ch--------hhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 79 HL--------EDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 79 ~~--------~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.. .+... ..+.+.++++.+++.+... +++.+||||||||++||++++. +||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 10 11110 0134677889999976544 5679999999999999988775 699
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 131 TQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+.+...+.+.+.++ +.|+|++|||..
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~ 188 (198)
T TIGR01189 160 KAGVALLAGLLRAHLARGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence 99999999988765 579999999865
No 149
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5e-28 Score=187.04 Aligned_cols=142 Identities=25% Similarity=0.333 Sum_probs=105.6
Q ss_pred hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
++.+.++ ++.|+.. ...+++++||++.+||+++|+|+||||||||+++|++.... ...
T Consensus 4 ~l~~~~l-~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENL-VFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEE-EEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 5666666 9999743 23589999999999999999999999999999999864210 112
Q ss_pred eeccccchh---------hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHLE---------DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~~---------~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++... +.+. ..+++.++++.+++..... +++.+|||||+||++||++++.
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-REPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-CCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 344333210 1010 1234567888899976544 5679999999999999998775
Q ss_pred --------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999998888654 5799999999764
No 150
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.5e-28 Score=188.04 Aligned_cols=144 Identities=24% Similarity=0.321 Sum_probs=105.7
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL----------- 71 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~----------- 71 (158)
.++++.+.++ ++.|+.. .+|+++||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 36 ~~~~l~i~~l-~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~ 112 (285)
T PRK14254 36 GETVIEARDL-NVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD 112 (285)
T ss_pred CCceEEEEEE-EEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence 4567777666 8888653 58999999999999999999999999999999997532 111
Q ss_pred --------eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538 72 --------RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 --------~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+++.++++.+++... ...+++.+||||||||++||
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA 192 (285)
T PRK14254 113 VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA 192 (285)
T ss_pred cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence 122322221 11111 12346677888887521 12356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.++++ ..|||++|||+++
T Consensus 193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~ 241 (285)
T PRK14254 193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQ 241 (285)
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 98875 79999999999999876 3699999999764
No 151
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-28 Score=202.16 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=106.4
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+|+++.++ ++.|++ ..+++|+||+|++||+++|+||||||||||+++|++.... +.
T Consensus 4 ~~l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGI-GKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeee-EEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 56777666 888864 3589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHh-------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 044538 72 RIGRHSRHL--------EDLL-------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~-------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
.+++.++.. .+.+ ...+++.++++.+++....+ +++.+|||||||||+||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAKT 159 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcc-cchhhCCHHHHHHHHHHHH
Confidence 234433221 0100 11245677899999976544 6779999999999999988
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
++. +||+.++..+.+.++++ +.|||+||||+++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~ 207 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAE 207 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 775 79999999999888664 4799999999754
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.7e-28 Score=184.71 Aligned_cols=143 Identities=21% Similarity=0.335 Sum_probs=104.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.|++.+.++ +++|+.. .+|+++||+|++|++++|+||||||||||+++|++... ..+
T Consensus 4 ~~~l~~~~l-~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 4 PPKMEARGL-SFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CcEEEEeee-EEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 467777776 9999643 58999999999999999999999999999999997521 110
Q ss_pred -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+.+. ..+++.++++.+++.+. ...+++.+||||||||++|
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 133332221 01110 12345567788887431 1235678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.++++. .|||++|||+++
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~ 210 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQ 210 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHH
Confidence 988775 699999999999887653 699999999754
No 153
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=4.6e-28 Score=183.65 Aligned_cols=139 Identities=22% Similarity=0.308 Sum_probs=102.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------- 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------- 69 (158)
+.+.++ ++.|++. .+++++||++++||+++|+||||||||||+++|++....
T Consensus 3 l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGI-NCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEee-EEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 444555 8888653 589999999999999999999999999999999964211
Q ss_pred -ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 70 -KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 70 -~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
+..+++.++.. .+... ..+.+.++++.+|++...+ +++.+||||||||++||++++.
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-RFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhc
Confidence 00133333221 11110 1234567788999976544 5678999999999999998774
Q ss_pred ------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|+|++|||.++
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 203 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999998888754 5799999999753
No 154
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.8e-28 Score=206.53 Aligned_cols=145 Identities=21% Similarity=0.250 Sum_probs=106.7
Q ss_pred chhhhhheeeeEEcCCC---------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------
Q 044538 12 SPMLQLIEVISFSYPNL---------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~---------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------- 69 (158)
++++++.++ ++.|+.. ...+|+++||+|++||+++|+||||||||||+++|++....
T Consensus 311 ~~~L~~~~l-~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 311 EPILQVRNL-VTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred CceEEEeee-EEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 357777666 8888621 13589999999999999999999999999999999853210
Q ss_pred ----------ceeeeccccch----h------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538 70 ----------KLRIGRHSRHL----E------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQK 116 (158)
Q Consensus 70 ----------~~~~~~~~~~~----~------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 116 (158)
+..+++.+|.. . +.+ ...+++.++++.+|++....++++++||||||
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqr 469 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHH
Confidence 11244444431 0 000 01135667899999963223356799999999
Q ss_pred HHHHHHHHHhh------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538 117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL 157 (158)
Q Consensus 117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~ 157 (158)
|||+||++++. +||+.++..+++.+++ .+.|||+||||+++
T Consensus 470 QRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~ 526 (623)
T PRK10261 470 QRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAV 526 (623)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999998875 6999999999988854 35799999999864
No 155
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.95 E-value=3.8e-28 Score=184.70 Aligned_cols=139 Identities=24% Similarity=0.339 Sum_probs=102.1
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce---------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL--------------- 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~--------------- 71 (158)
+.+.++ ++.|+.. .+++|+||+|++||+++|+||||||||||+++|++.... .+
T Consensus 2 l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENL-NLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEE-EEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 445555 8888753 489999999999999999999999999999999875421 11
Q ss_pred ----eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCC----CCCCCCCCCCCChHHHHHHHHHH
Q 044538 72 ----RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLP----GHNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 ----~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. .+.+. ..+.+.++++.+++. ... ++++.+||||||||++||+
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRL-HDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHh-hCCcccCCHHHHHHHHHHH
Confidence 122222210 01100 123456788889996 333 3567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+++. +||+.+...+.+.+++.. .|||++|||+++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 205 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQ 205 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHH
Confidence 8775 699999999999887653 699999999763
No 156
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.95 E-value=4.9e-28 Score=184.56 Aligned_cols=137 Identities=24% Similarity=0.333 Sum_probs=101.2
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------------
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------------- 69 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------------- 69 (158)
+.++ ++.|+. ..+++|+||+|++||+++|+||||||||||+++|++....
T Consensus 3 ~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDV-TKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEE-EEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 3444 888864 3589999999999999999999999999999999964211
Q ss_pred ------ceeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 70 ------KLRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 70 ------~~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
+..+++.++.. .+.+. ..+.+.++++.+++.+... +++.+|||||+||++||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~la 158 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-HMPAQLSGGQQQRVAIA 158 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-cChhhcCHHHHHHHHHH
Confidence 01123222210 01110 1234667889999976544 56689999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.+++. +.|+|++|||+++
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 98775 69999999998888654 5799999999754
No 157
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.95 E-value=3.2e-28 Score=201.68 Aligned_cols=141 Identities=23% Similarity=0.318 Sum_probs=106.2
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+|+.+.++ +++|++ ..+|+|+||+|.+|++++|+||||||||||+++|++.... +.
T Consensus 3 ~~i~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 79 (501)
T PRK10762 3 ALLQLKGI-DKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79 (501)
T ss_pred ceEEEeee-EEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 46777666 888864 3589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 72 RIGRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
.+++.++.. .+.+ ...+++.++++.+++.+..+ +++.+|||||||||+||++++.
T Consensus 80 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD-KLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred CEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHhc
Confidence 234433321 0100 01245677899999986554 5779999999999999988775
Q ss_pred ------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++.++.+.++++ +.|||+||||+++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~ 203 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKE 203 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 79999999998877654 5699999999764
No 158
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.2e-28 Score=185.12 Aligned_cols=143 Identities=22% Similarity=0.312 Sum_probs=103.7
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------ 71 (158)
++++.+.++ ++.|++. .+++++||+|++||+++|+||||||||||+++|++.... .+
T Consensus 5 ~~~l~~~~l-~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 81 (254)
T PRK14273 5 EAIIETENL-NLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNF 81 (254)
T ss_pred CceEEEeee-EEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccc
Confidence 457777776 8888753 589999999999999999999999999999999975321 11
Q ss_pred -------eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+.+ ...+.+.++++.+++.. ...++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred cHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 122222210 0100 01234556777777731 11235678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.++++. .|||++|||+++
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~ 211 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQ 211 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 998875 699999999998887764 699999999764
No 159
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.95 E-value=3.4e-28 Score=200.99 Aligned_cols=143 Identities=26% Similarity=0.315 Sum_probs=106.9
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------- 69 (158)
.+++.+.++ ++.|++. .+|+|+||+|++||+++|+||||||||||+++|++....
T Consensus 258 ~~~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 258 EPRIVLNNG-VVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CceEEEece-EEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 457777666 8888643 489999999999999999999999999999999974321
Q ss_pred ceeeeccccch----------hhHh--------------h--HHHHHHHHHHHcCCCC-CCCCCCCCCCChHHHHHHHHH
Q 044538 70 KLRIGRHSRHL----------EDLL--------------T--MEEAVHAKLRKFGLPG-HNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 70 ~~~~~~~~~~~----------~~~~--------------~--~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~ia 122 (158)
+..+++.++.. .+.. . ..+.+.++++.+++.. .. ++++.+|||||||||+||
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-DAPFHSLSWGQQRLALIV 413 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-cCchhhCCHHHHHHHHHH
Confidence 01133333211 0000 0 1234677889999976 44 467799999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc---C-CeEEEEeecCCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF---A-GGVVLVSHDSRLI 158 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~---~-~tvi~vtHd~~~~ 158 (158)
++++. +||+.+...+.+.|+++ + .|||+||||++++
T Consensus 414 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 414 RALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 88775 69999999999988765 2 4699999998753
No 160
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.2e-28 Score=184.72 Aligned_cols=141 Identities=23% Similarity=0.311 Sum_probs=103.3
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-------------- 71 (158)
++.+.++ ++.|++. .+++++||+|++|++++|+||||||||||+++|++... ..+
T Consensus 3 ~l~~~~l-~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDL-KVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEee-EEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3555565 8888653 58999999999999999999999999999999997642 111
Q ss_pred ---eeeccccch--------hhHhh--------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538 72 ---RIGRHSRHL--------EDLLT--------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 ---~~~~~~~~~--------~~~~~--------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. .+.+. ..+.+.++++.+++... ..++++.+||||||||++||+
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 159 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIAR 159 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHH
Confidence 123322211 01110 12345677888888531 223567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+++. +||+.++..+.+.+++. +.|+|++|||+++
T Consensus 160 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14247 160 ALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQ 207 (250)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8775 69999999999988765 3799999999764
No 161
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.95 E-value=8.2e-28 Score=183.22 Aligned_cols=143 Identities=24% Similarity=0.398 Sum_probs=102.8
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--h---cce---------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--R---QKL--------------- 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--~---~~~--------------- 71 (158)
++++.+.++ ++.|++. .+|+++||++++||+++|+||||||||||+++|++.. . ..+
T Consensus 5 ~~~l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T CHL00131 5 KPILEIKNL-HASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81 (252)
T ss_pred CceEEEEeE-EEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhh
Confidence 346777666 8888743 5899999999999999999999999999999999741 1 100
Q ss_pred ---eeeccccch--------hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHH
Q 044538 72 ---RIGRHSRHL--------EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVM 120 (158)
Q Consensus 72 ---~~~~~~~~~--------~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ 120 (158)
.+++.++.. .+.+. ..+.+.++++.+++.+...++++. .|||||+||++
T Consensus 82 ~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred heeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 122222210 00000 013356678899996322234555 59999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 9998775 69999999999888765 5799999999763
No 162
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.8e-28 Score=185.40 Aligned_cols=144 Identities=22% Similarity=0.335 Sum_probs=104.0
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL----------- 71 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~----------- 71 (158)
.++++.+.++ ++.|++ ..+|+++||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 18 ~~~~l~~~~l-~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 18 KEHILEVKDL-SIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCceEEEEEE-EEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457777776 999874 358999999999999999999999999999999987421 111
Q ss_pred --------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHH
Q 044538 72 --------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 72 --------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ 120 (158)
.+++.++.. .+.+. ..+.+.+.++.+++... ..++++.+||||||||++
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~ 174 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC 174 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence 123322221 11110 11234556777777421 123567899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
||++++. +||+.++..+.+.++++. .|||++|||+++
T Consensus 175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 225 (268)
T PRK14248 175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225 (268)
T ss_pred HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHH
Confidence 9998875 699999999999887763 699999999753
No 163
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=4.1e-28 Score=200.92 Aligned_cols=140 Identities=21% Similarity=0.292 Sum_probs=104.1
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c--------------------e
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K--------------------L 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~--------------------~ 71 (158)
+++.++ ++.|++ ..+|+++||++++|++++|+||||||||||+++|++.... . .
T Consensus 2 l~i~~l-~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGI-VKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeE-EEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 344455 888864 3589999999999999999999999999999999975321 0 1
Q ss_pred eeeccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 72 RIGRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
.+++.++.. .+.+ ...+++.++++.+++.....++++.+|||||||||+||++++.
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~ 158 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK 158 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence 133433321 0000 0123567789999997644345679999999999999988775
Q ss_pred ------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+..++.+.++++ +.|||+||||+++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~ 203 (500)
T TIGR02633 159 QARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNE 203 (500)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHH
Confidence 79999999998887664 5699999999764
No 164
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.6e-29 Score=179.99 Aligned_cols=141 Identities=18% Similarity=0.243 Sum_probs=103.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG 74 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~ 74 (158)
|+++..+ +++|+.. ..+++||||++++|+++||+|||||||||++|+|+....+ +..+|
T Consensus 1 Ml~v~~l-~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDL-TKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred Ceeeeeh-hhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 3455555 8888763 3489999999999999999999999999999999853211 01122
Q ss_pred cccc--chhhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 75 RHSR--HLEDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 75 ~~~~--~~~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
..+. .+...+ ..+.++.++.+.+++.+..+ +++.+||-||||||+||+|++.
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-RRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-HHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 1110 011111 12356777888999987666 5679999999999999999774
Q ss_pred -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||..+...+.+.+++. +.+|||+||++++
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~E 195 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQE 195 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHH
Confidence 69998888888877665 4699999999864
No 165
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=4.5e-28 Score=186.59 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=100.0
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccc
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHS 77 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~ 77 (158)
++.|+. ..+|+++||++++|++++|+||||||||||+++|++.... ...+++.+
T Consensus 31 ~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 31 LKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred hhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 777764 3589999999999999999999999999999999864211 01234333
Q ss_pred cch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 78 RHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 78 ~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
+.. .+.+. ..+++.++++.+++.+... +++.+||||||||++||++++.
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~lAral~~~p~illLDEP 187 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELSGGMQQRVGLARALAVDPDILLMDEA 187 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 221 11110 1234667889999976544 5678999999999999998775
Q ss_pred --CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+.++ +.|||++|||+++
T Consensus 188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~ 223 (269)
T cd03294 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDE 223 (269)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999988664 4799999999753
No 166
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.1e-28 Score=186.39 Aligned_cols=141 Identities=27% Similarity=0.359 Sum_probs=105.2
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
.++.+.++ ++.|+.. .+|+++||++.+|++++|+||||||||||+++|++.... ...
T Consensus 6 ~~l~i~~l-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQL-TLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEE-EEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 45666666 8888743 589999999999999999999999999999999964211 011
Q ss_pred eeccccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 73 IGRHSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 73 ~~~~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+++.++.. .+.. ...+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-QSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-CCcccCChHHHHHHHHHHHHhcC
Confidence 33332210 0110 01235667889999976544 5679999999999999998775
Q ss_pred -----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.++ +.|||++|||+++
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~ 206 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQ 206 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999998888664 4699999999863
No 167
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.95 E-value=8.3e-28 Score=182.71 Aligned_cols=140 Identities=22% Similarity=0.324 Sum_probs=99.5
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hcc--------------------e
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQK--------------------L 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~~--------------------~ 71 (158)
+.+.++ ++.|++. ++++++||+|++|++++|+||||||||||+++|++.. ... .
T Consensus 2 i~~~nl-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDL-HVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEE-EEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 455555 8888753 5899999999999999999999999999999999862 110 0
Q ss_pred eeeccccchh---------------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHHHHH
Q 044538 72 RIGRHSRHLE---------------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVMFTL 123 (158)
Q Consensus 72 ~~~~~~~~~~---------------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ia~ 123 (158)
.+++.++... ... ...+.+.+.++.+++++....+++. +||||||||++||+
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 1232222110 000 0123345677788885333334554 79999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~ 207 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 8775 69999999998877654 4799999999753
No 168
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.95 E-value=5.8e-28 Score=184.49 Aligned_cols=140 Identities=21% Similarity=0.267 Sum_probs=103.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------c---------------e
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------K---------------L 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~---------------~ 71 (158)
++.+.++ +++| . .++|+++||+|.+||+++|+||||||||||+++|++.... . .
T Consensus 4 ~l~~~~l-~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNI-ALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCe-EEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 4556666 8888 2 3589999999999999999999999999999999975321 0 1
Q ss_pred eeeccccch----hhHh----------------hHHHHHHHHHHHcCCCCC--CCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 72 RIGRHSRHL----EDLL----------------TMEEAVHAKLRKFGLPGH--NHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 72 ~~~~~~~~~----~~~~----------------~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
.+++.++.. .+.. ...+++.++++.+++.+. ..++++.+|||||+||++||++++.
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p 159 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA 159 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence 133333321 1000 012456778899999752 1235678999999999999998775
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~ 203 (254)
T PRK10418 160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGV 203 (254)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHH
Confidence 69999999888888654 4799999999753
No 169
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.95 E-value=2.5e-28 Score=183.75 Aligned_cols=137 Identities=16% Similarity=0.168 Sum_probs=98.7
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR 75 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~ 75 (158)
+.++ ++.|+.. ++++|+||++++||+++|+||||||||||+++|++.... ...+++
T Consensus 3 ~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNL-NVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeE-EEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 3444 8888643 589999999999999999999999999999999964210 112343
Q ss_pred cccch--h------hHhh---------HHHHHHHHHHHcC-CCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 76 HSRHL--E------DLLT---------MEEAVHAKLRKFG-LPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 76 ~~~~~--~------~~~~---------~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
.++.. . +.+. ..+...++++.++ +.... ++++.+|||||+||++||++++.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEML-GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHh-hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 33321 0 1110 1123455677776 44433 35678999999999999988775
Q ss_pred --CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+.+. +.|+|++|||+++
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence 69999999999988764 5799999999764
No 170
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.3e-28 Score=185.55 Aligned_cols=143 Identities=28% Similarity=0.357 Sum_probs=104.7
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|+. ..+|+|+||+|++|++++|+||||||||||+++|++... ..+
T Consensus 17 ~~~l~~~nl-~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDV-SVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeE-EEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 456777676 888874 358999999999999999999999999999999997532 110
Q ss_pred -------eeeccccch-------hhHh--------------hHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLL--------------TMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~--------------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ 120 (158)
.+++.++.. .+.+ ...+++.++++.+++... ...+++.+||||||||++
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 123322210 0111 012345667888898531 123467899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++. .|||++|||+++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~ 224 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ 224 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence 9998775 699999999999887653 699999999754
No 171
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.4e-28 Score=183.04 Aligned_cols=142 Identities=26% Similarity=0.385 Sum_probs=105.4
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---------------------e
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------L 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------~ 71 (158)
+++.+.++ +++|++- .+++||||++.+||+++|||||||||||++|++++..++. .
T Consensus 3 ~lL~v~~l-~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~ 79 (250)
T COG0411 3 PLLEVRGL-SKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79 (250)
T ss_pred ceeeeccc-eeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhc
Confidence 45556666 8999764 5899999999999999999999999999999998532210 1
Q ss_pred eeeccccch---------h-----------------------hHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538 72 RIGRHSRHL---------E-----------------------DLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV 119 (158)
Q Consensus 72 ~~~~~~~~~---------~-----------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 119 (158)
.+.+-+|.. . ..-...+++.++|+.+|+.+..+ .+..+||+|||+|+
T Consensus 80 Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~-~~A~~LsyG~qR~L 158 (250)
T COG0411 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELAD-RPAGNLSYGQQRRL 158 (250)
T ss_pred cceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhc-chhhcCChhHhHHH
Confidence 111111110 0 01112366788999999998766 67899999999999
Q ss_pred HHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCCC
Q 044538 120 MFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRLI 158 (158)
Q Consensus 120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~ 158 (158)
.||+|++. ++.+....++.+.+++. +.||++|.||++++
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V 213 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV 213 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence 99999875 46677777777777654 37999999999764
No 172
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=5.5e-28 Score=173.21 Aligned_cols=142 Identities=23% Similarity=0.341 Sum_probs=106.2
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------- 70 (158)
+.+.+.++ .++|+.. .+|++||++-.+|+++.|||.|||||||++|+|.....+.
T Consensus 5 ~~l~v~dl-HK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDL-HKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHH-Hhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 34666666 8888765 4799999999999999999999999999999997432110
Q ss_pred -----------eeeeccccch--hhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHH
Q 044538 71 -----------LRIGRHSRHL--EDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVR 118 (158)
Q Consensus 71 -----------~~~~~~~~~~--~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 118 (158)
-+.+..+|.+ +..++ ..++++.+|.++|+.+..+ .++..|||||+||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~-~YP~~LSGGQQQR 160 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKAD-AYPAHLSGGQQQR 160 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhh-cCccccCchHHHH
Confidence 0122222221 11111 1266788999999988766 4558999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRLI 158 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~~ 158 (158)
++||||+.. .|||+-.-++++.++++ +.|+++|||.|.|+
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FA 215 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFA 215 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHH
Confidence 999998764 69999888877776554 68999999998763
No 173
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.7e-28 Score=184.53 Aligned_cols=143 Identities=24% Similarity=0.336 Sum_probs=104.0
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|+. ..+|+|+||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 10 ~~~l~~~~l-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 10 QPQIKVENL-NLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred ceeEEEeee-EEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 457777666 888864 358999999999999999999999999999999997532 100
Q ss_pred -------eeeccccch--h-----hHhh------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538 72 -------RIGRHSRHL--E-----DLLT------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 -------~~~~~~~~~--~-----~~~~------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. . +.+. ..+.+.++++.+++.. ...++++.+|||||+||++||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 166 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIA 166 (258)
T ss_pred hHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHH
Confidence 122222211 0 1010 1123566788888742 122356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 167 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~ 215 (258)
T PRK14268 167 RTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQ 215 (258)
T ss_pred HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 98875 69999999999988765 3799999999754
No 174
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=5.1e-28 Score=200.67 Aligned_cols=145 Identities=13% Similarity=0.196 Sum_probs=105.5
Q ss_pred chhhhhheeeeEEcCC-CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh----cc----------------
Q 044538 12 SPMLQLIEVISFSYPN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR----QK---------------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~----~~---------------- 70 (158)
.+++.+.++ ++.|+. +...+++|+||+|++|++++|+||||||||||+++|++... ..
T Consensus 257 ~~~l~~~~l-~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~ 335 (506)
T PRK13549 257 EVILEVRNL-TAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQA 335 (506)
T ss_pred CceEEEecC-ccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence 356777666 888842 22358999999999999999999999999999999997532 00
Q ss_pred --eeeeccccch-----h------hHh--------------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538 71 --LRIGRHSRHL-----E------DLL--------------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 71 --~~~~~~~~~~-----~------~~~--------------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 120 (158)
..+++.++.. . +.+ . ..+.+.++++.+++.....++++.+|||||||||+
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~ 415 (506)
T PRK13549 336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV 415 (506)
T ss_pred HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence 0133333321 0 000 0 11346678899999632234677999999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~ 467 (506)
T PRK13549 416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPE 467 (506)
T ss_pred HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 9988775 69999999988887654 5799999999864
No 175
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=8.7e-28 Score=199.82 Aligned_cols=145 Identities=23% Similarity=0.300 Sum_probs=106.6
Q ss_pred chhhhhheeeeEEcCC---CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---cce--------------
Q 044538 12 SPMLQLIEVISFSYPN---LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---QKL-------------- 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~---~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~~~-------------- 71 (158)
.+|+.+.++ ++.|++ +...+|+++||+|++|++++|+||||||||||+++|++... ..+
T Consensus 277 ~~~l~~~~l-~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 277 EPIIKVRNV-SKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CceEEEecc-EEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 457777776 888853 22358999999999999999999999999999999986421 011
Q ss_pred ----------eeeccccch--------hhHhh-----------HHHHHHHHHHHcCCCCC----CCCCCCCCCChHHHHH
Q 044538 72 ----------RIGRHSRHL--------EDLLT-----------MEEAVHAKLRKFGLPGH----NHLTPIANLSGGQKVR 118 (158)
Q Consensus 72 ----------~~~~~~~~~--------~~~~~-----------~~~~~~~~l~~~~l~~~----~~~~~~~~LSgGqkqr 118 (158)
.+++.++.. .+.+. ..+++.++++.+++... ..++++.+||||||||
T Consensus 356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 134433321 01110 12345678899999642 2246779999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhh----cCCeEEEEeecCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDE----FAGGVVLVSHDSRL 157 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~----~~~tvi~vtHd~~~ 157 (158)
|+||++++. +||+.+...+.+.+++ .+.|||+||||+++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~ 490 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDF 490 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 999988775 6999999999998854 35799999999764
No 176
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.95 E-value=2e-27 Score=174.97 Aligned_cols=139 Identities=20% Similarity=0.163 Sum_probs=100.6
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------eeeecccc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK----------------LRIGRHSR 78 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~----------------~~~~~~~~ 78 (158)
+.+.++ +++|+. ..++ ++||+|++||+++|+||||||||||+++|++..... ..+++.++
T Consensus 2 l~~~~l-~~~~~~--~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQL-QFNIEQ--KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEe-eEEECC--cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 445555 888864 2345 599999999999999999999999999999753210 01222222
Q ss_pred ch--------hhHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 79 HL--------EDLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 79 ~~--------~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
.. .+... ..+.+.++++.+++.+... +++.+||||||||++||++++. +||+
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-EKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11 11111 1235667788899876544 5678999999999999988775 6999
Q ss_pred HHHHHHHHHHhh---cCCeEEEEeecCCCC
Q 044538 132 QSIVAVAVTLDE---FAGGVVLVSHDSRLI 158 (158)
Q Consensus 132 ~~~~~l~~~l~~---~~~tvi~vtHd~~~~ 158 (158)
.+...+.+.+++ .+.|+|++|||.+++
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i 186 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESSI 186 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 999999988863 357999999998753
No 177
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.95 E-value=6.8e-28 Score=180.37 Aligned_cols=137 Identities=20% Similarity=0.263 Sum_probs=98.9
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeec
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGR 75 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~ 75 (158)
+.++ +++|++. ++++++||++.+|++++|+||||||||||+++|++.... +..+++
T Consensus 3 ~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENL-NAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeE-EeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 3444 7888643 589999999999999999999999999999999864210 011333
Q ss_pred cccch--------hhHhh----------HHHHHHHHHHHc-CCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 76 HSRHL--------EDLLT----------MEEAVHAKLRKF-GLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 76 ~~~~~--------~~~~~----------~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
.++.. .+.+. ..+.+.++++.+ +++.... +++.+||||||||++||++++.
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRK-QLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhh-CchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 33221 01110 112345567777 4654433 5678999999999999988774
Q ss_pred ---CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||+++
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 194 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARF 194 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999988765 4699999999753
No 178
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.9e-28 Score=199.68 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=106.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
|++.+.++ ++.|++. .+|+|+||++++|++++|+||||||||||+++|++.... +.
T Consensus 3 ~~l~~~~l-~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGI-GKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeee-EEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 56777666 8888643 589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 72 RIGRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
.+++.+|.. .+.+ ...+++.++++.+++..... +++.+||||||||++||++++.
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPD-TPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcC-CchhhCCHHHHHHHHHHHHHHhC
Confidence 234433321 0000 11245677899999976544 5679999999999999988775
Q ss_pred -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+..++.+.++++ +.|||+||||+++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~ 202 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEE 202 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 69999999999888764 4799999999754
No 179
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=6.2e-28 Score=182.86 Aligned_cols=139 Identities=20% Similarity=0.330 Sum_probs=102.3
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~ 72 (158)
++.+.++ ++.|+. ..+++++||++++|++++|+||||||||||+++|++.... +..
T Consensus 3 ~l~~~~l-~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNL-AKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCc-EEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 4555565 888864 3589999999999999999999999999999999964210 112
Q ss_pred eeccccch--------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 73 IGRHSRHL--------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 73 ~~~~~~~~--------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+++.++.. .+.+ .....+.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRD-SMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhh-cchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 33333221 0110 01234667889999876544 5678999999999999988764
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||+.++..+.+.+++. +.|+|++|||++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 198 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR 198 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH
Confidence 69999998888777543 579999999975
No 180
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.9e-28 Score=179.54 Aligned_cols=144 Identities=28% Similarity=0.353 Sum_probs=108.2
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------- 69 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------- 69 (158)
.++++.+.++ ++.|.++ .+|+|+|++|++||.++|+||||||||||++++++...+
T Consensus 28 ~~~li~l~~v-~v~r~gk--~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNV-SVRRNGK--KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecce-EEEECCE--eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3455677776 8888764 589999999999999999999999999999999853211
Q ss_pred ceeeeccccch------------------------hh-Hh--hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 70 KLRIGRHSRHL------------------------ED-LL--TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 70 ~~~~~~~~~~~------------------------~~-~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
+..+|+..... .. .. ...+++..+++.+|+..... ++..+||-||||||.||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~-r~~~~LS~Ge~rrvLia 183 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLAD-RPFGSLSQGEQRRVLIA 183 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhcc-CchhhcCHhHHHHHHHH
Confidence 01122111000 00 01 12356778999999987554 78899999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcC-----CeEEEEeecCCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFA-----GGVVLVSHDSRLI 158 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~-----~tvi~vtHd~~~~ 158 (158)
||++. +||..++..+.+.+.+.. .++|+|||..+++
T Consensus 184 RALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi 236 (257)
T COG1119 184 RALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI 236 (257)
T ss_pred HHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc
Confidence 99875 699999999999888764 4699999987753
No 181
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=8.6e-28 Score=183.99 Aligned_cols=140 Identities=28% Similarity=0.323 Sum_probs=103.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
|+.+.++ ++.|+. ..+|+++||+|++|++++|+||||||||||+++|++.... ...+
T Consensus 2 ~l~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNL-SVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeE-EEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3455555 888875 3589999999999999999999999999999999964211 0113
Q ss_pred eccccch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh------h
Q 044538 74 GRHSRHL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM------Y 127 (158)
Q Consensus 74 ~~~~~~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l------~ 127 (158)
++.++.. .+.+. ..+.+.++++.+++..... +.+.+||||||||++||++++ .
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-RDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 3332211 11110 1234667889999976544 567899999999999999988 2
Q ss_pred ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 203 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNL 203 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 59999999888888654 4699999999754
No 182
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.95 E-value=6.7e-28 Score=200.50 Aligned_cols=137 Identities=24% Similarity=0.279 Sum_probs=102.0
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hc--ce--------------------
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQ--KL-------------------- 71 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~--~~-------------------- 71 (158)
+.++ +++|+. ..+|+++||+|.+|++++|+||||||||||+++|++.. .. .+
T Consensus 3 ~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNL-TKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEE-EEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 3444 888864 35899999999999999999999999999999999863 11 11
Q ss_pred ------------------------------eeeccccc---hh------hHh------------hHHHHHHHHHHHcCCC
Q 044538 72 ------------------------------RIGRHSRH---LE------DLL------------TMEEAVHAKLRKFGLP 100 (158)
Q Consensus 72 ------------------------------~~~~~~~~---~~------~~~------------~~~~~~~~~l~~~~l~ 100 (158)
.+++.++. .. +.+ ...+++.++++.++++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 12222221 00 000 0124566789999997
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 101 GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 101 ~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.... +++.+|||||||||+||++++. +||+.++.++.+.++++ +.|||+||||+++
T Consensus 160 ~~~~-~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~ 231 (520)
T TIGR03269 160 HRIT-HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231 (520)
T ss_pred hhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 6544 5679999999999999998775 69999999998877654 5799999999864
No 183
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.95 E-value=6.6e-28 Score=200.93 Aligned_cols=145 Identities=21% Similarity=0.342 Sum_probs=107.2
Q ss_pred chhhhhheeeeEEcCC---------CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------
Q 044538 12 SPMLQLIEVISFSYPN---------LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~---------~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------- 69 (158)
.+++.+.++ ++.|+. +...+|+++||+|++||+++|+||||||||||+++|++....
T Consensus 273 ~~~l~~~~l-~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQL-QVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCc-EEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccc
Confidence 457887777 998852 123589999999999999999999999999999999864210
Q ss_pred ---------ceeeeccccch----h------hHh-----------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHH
Q 044538 70 ---------KLRIGRHSRHL----E------DLL-----------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQK 116 (158)
Q Consensus 70 ---------~~~~~~~~~~~----~------~~~-----------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 116 (158)
+..+++.+|.. . +.+ . ..+++.++++.+++.....++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 11244444331 0 000 0 1234667889999963222357799999999
Q ss_pred HHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 117 VRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 117 qrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|||+||++++. +||+.+...+.+.++++ +.|||+||||+++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~ 488 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHV 488 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence 99999988775 69999999999888753 5799999999764
No 184
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1e-27 Score=184.59 Aligned_cols=143 Identities=27% Similarity=0.330 Sum_probs=103.7
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|+. ..+|+++||+|++|++++|+||||||||||+++|++... ..+
T Consensus 11 ~~~l~i~nl-~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNV-TISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeE-EEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 356777776 888865 358999999999999999999999999999999987532 100
Q ss_pred -------eeeccccch--h-----hHhh-----------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHH
Q 044538 72 -------RIGRHSRHL--E-----DLLT-----------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 -------~~~~~~~~~--~-----~~~~-----------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. . +.+. ..+.+.++++.+++.. ...++++.+||||||||++||+
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar 167 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR 167 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence 133333221 0 1010 1234456677777632 1223567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+++. +||+.+...+.+.++++. .|||++|||+++
T Consensus 168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 215 (269)
T PRK14259 168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ 215 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8775 699999999999887653 699999999764
No 185
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.95 E-value=8.6e-28 Score=199.01 Aligned_cols=144 Identities=13% Similarity=0.202 Sum_probs=104.1
Q ss_pred hhhhhheeeeEEcCC-CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----ce----------------
Q 044538 13 PMLQLIEVISFSYPN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----KL---------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----~~---------------- 71 (158)
+++.+.++ ++.|+. +...+++++||+|.+||+++|+||||||||||+++|++...+ .+
T Consensus 256 ~~l~~~~l-~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 256 VILEARNL-TCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred ceEEEeCC-cccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 46666666 777732 123589999999999999999999999999999999975321 00
Q ss_pred --eeeccccch-----hh------H--------h------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHH
Q 044538 72 --RIGRHSRHL-----ED------L--------L------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 --~~~~~~~~~-----~~------~--------~------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+ . . . ..+.+.++++.+++.....++++.+||||||||++|
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHH
Confidence 133333321 00 0 0 0 123466789999996433346779999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
|++++. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~ 465 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAE 465 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 988774 69999999888776554 5799999999864
No 186
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=190.67 Aligned_cols=133 Identities=23% Similarity=0.230 Sum_probs=99.2
Q ss_pred eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeee
Q 044538 19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIG 74 (158)
Q Consensus 19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~ 74 (158)
++ +++|++. .+ |+||++++||+++|+||||||||||+++|++.... ...++
T Consensus 5 ~l-~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NF-KQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EE-EEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 55 7888642 23 89999999999999999999999999999964211 01233
Q ss_pred ccccch--h------hHhh------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 75 RHSRHL--E------DLLT------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 75 ~~~~~~--~------~~~~------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
+.++.. . +.+. ..+++.++++.+++.+..+ +++.+|||||||||+||++++. +
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLD-RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 333321 1 1111 1245678899999986554 5679999999999999998775 6
Q ss_pred CCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 129 LDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||+..+..+.+.++++ +.|+|+||||+++
T Consensus 159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 159 LDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 9999999888888654 5799999999753
No 187
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=1.3e-27 Score=177.69 Aligned_cols=135 Identities=27% Similarity=0.348 Sum_probs=99.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|++. . .++||++.+|++++|+||||||||||+++|++.... +..+++.++
T Consensus 3 ~~~l-~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 3 LDKI-RFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred EEeE-EEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 3444 8888642 2 399999999999999999999999999999864211 012333332
Q ss_pred ch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. .+.+ ...+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~ 156 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEK-RLPGELSGGERQRVALARVLVRDKPVLLLDEPF 156 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 21 1111 01235677899999976544 5678999999999999988775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||+++
T Consensus 157 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 191 (211)
T cd03298 157 AALDPALRAEMLDLVLDLHAETKMTVLMVTHQPED 191 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 69999999999888754 5799999999764
No 188
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=8.9e-28 Score=203.87 Aligned_cols=138 Identities=25% Similarity=0.414 Sum_probs=104.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce------eeeccccc-----
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL------RIGRHSRH----- 79 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~------~~~~~~~~----- 79 (158)
|+.+.++ +++|+. ..+|+|+||+|++|++++|+||||||||||+++|++.... .+ .+++..+.
T Consensus 3 ~l~i~~l-s~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGA-WLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeE-EEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 4566666 888875 3589999999999999999999999999999999975321 11 11111100
Q ss_pred ---hhhH------------------------------h----------------hHHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538 80 ---LEDL------------------------------L----------------TMEEAVHAKLRKFGLPGHNHLTPIAN 110 (158)
Q Consensus 80 ---~~~~------------------------------~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 110 (158)
..+. + ....++.++++.+|+.. ++++.+
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~ 156 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSS 156 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhh
Confidence 0000 0 01234566788888862 367899
Q ss_pred CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 111 LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 111 LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
|||||||||+||++++. +||+.++.++.+.|++++.|||+||||.++
T Consensus 157 LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~ 215 (635)
T PRK11147 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSF 215 (635)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 99999999999988775 799999999999999998899999999865
No 189
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.95 E-value=1.3e-27 Score=178.65 Aligned_cols=141 Identities=28% Similarity=0.377 Sum_probs=100.6
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
.+.++ ++.|+.....+++|+||+|++|++++|+||||||||||+++|++.... +..+++
T Consensus 4 ~~~~l-~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 4 EFRNV-SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEE-EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 34455 888865334589999999999999999999999999999999964321 011333
Q ss_pred cccch-------hhHhh------HHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh-----
Q 044538 76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
.++.. .+... ..+.+.++++.+++.+..... ++.+||||||||++||++++.
T Consensus 83 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 162 (220)
T cd03245 83 VPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPIL 162 (220)
T ss_pred eCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 33221 11110 113455667777775433221 246999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++. .|||++|||+++
T Consensus 163 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 201 (220)
T cd03245 163 LLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSL 201 (220)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 799999999999998764 599999999753
No 190
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.95 E-value=1.5e-27 Score=182.28 Aligned_cols=138 Identities=28% Similarity=0.361 Sum_probs=102.4
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
.+.++ ++.|+. ..+|+++||++++||+++|+||||||||||+++|++.... ...+++
T Consensus 3 ~~~~l-~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 3 RLSRV-SWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred eEEeE-EEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 34454 888864 3589999999999999999999999999999999964210 011333
Q ss_pred cccch--------hhHh----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 76 HSRHL--------EDLL----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 76 ~~~~~--------~~~~----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.++.. .+.+ ...+++.++++.+++....+ +++.+|||||+||++||++++.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-RDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 33221 0111 01134667889999976544 5678999999999999988775
Q ss_pred --------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||+++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999888765 5799999999764
No 191
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.1e-27 Score=182.78 Aligned_cols=142 Identities=23% Similarity=0.285 Sum_probs=102.5
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce-------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------- 71 (158)
+++.+.++ ++.|+. .++|+|+||+|.+||+++|+||||||||||+++|++.... .+
T Consensus 3 ~~l~~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (253)
T PRK14267 3 FAIETVNL-RVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79 (253)
T ss_pred ceEEEEeE-EEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccC
Confidence 35666666 888865 3589999999999999999999999999999999976321 11
Q ss_pred ------eeeccccch--------hhHhh--------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHH
Q 044538 72 ------RIGRHSRHL--------EDLLT--------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 72 ------~~~~~~~~~--------~~~~~--------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ 120 (158)
.+++.++.. .+.+. ..+.+.++++.+++... ..++++.+||||||||++
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred hHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 122222210 01000 01235567788887421 123567899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++. .|||++|||+++
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 210 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQ 210 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHH
Confidence 9998775 699999999999887753 699999999764
No 192
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.95 E-value=1.1e-27 Score=179.66 Aligned_cols=137 Identities=20% Similarity=0.268 Sum_probs=102.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-------------eeeeccccch
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-------------LRIGRHSRHL 80 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-------------~~~~~~~~~~ 80 (158)
+.++ ++.|+. ..+++++||++.+|++++|+||||||||||+++|++.... . ..+++.++..
T Consensus 3 l~~v-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 3 TKNL-SKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEeE-EEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 3444 788864 3589999999999999999999999999999999974211 0 1233332211
Q ss_pred --------hhHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 81 --------EDLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 81 --------~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
.+... ..+++.++++.+++.+..+ +++.+|||||+||++||++++. +||+.
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~ 158 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI 158 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence 11111 1245677889999976544 5678999999999999988775 69999
Q ss_pred HHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 133 SIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 133 ~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
++..+.+.+.++ +.|||++|||.++
T Consensus 159 ~~~~l~~~L~~~~~~~~tiii~sH~~~~ 186 (223)
T TIGR03740 159 GIQELRELIRSFPEQGITVILSSHILSE 186 (223)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 999999988765 4699999999764
No 193
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.3e-27 Score=183.09 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=103.0
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL----------- 71 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~----------- 71 (158)
..+++.+.++ ++.|+.. .+|+++||+|++||+++|+||||||||||+++|++... ..+
T Consensus 17 ~~~~l~~~nl-~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 17 DHSVFEVEGV-KVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCceEEEeeE-EEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 3457777666 8888753 58999999999999999999999999999999996421 110
Q ss_pred --------eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538 72 --------RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 --------~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.++++.+++.. ....+++.+|||||+||++||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 123333221 11110 1123345667777631 112356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.|.++ +.|||++|||.++
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 222 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQ 222 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 98775 69999999999999776 3699999999754
No 194
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.3e-27 Score=192.54 Aligned_cols=126 Identities=24% Similarity=0.301 Sum_probs=96.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccccch------
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHSRHL------ 80 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~~~~------ 80 (158)
.+++++||+|++||+++|+||||||||||+++|++.... +..+++.+|..
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999863210 01244443321
Q ss_pred --hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538 81 --EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134 (158)
Q Consensus 81 --~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~ 134 (158)
.+.+. ..+++.++++.+++.+..+ +++.+||||||||++||++++. +||+.++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~-~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAH-SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 11110 1245677899999987554 5679999999999999998775 6999999
Q ss_pred HHHHHHHhhc----CCeEEEEeecCCC
Q 044538 135 VAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 135 ~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
..+.+.+.++ +.|||+||||+++
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~ 227 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDE 227 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence 9998888654 5799999999764
No 195
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=182.66 Aligned_cols=141 Identities=23% Similarity=0.353 Sum_probs=102.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-------------- 71 (158)
++.+.++ +++|++. .+|+++||+|++|++++|+||||||||||+++|++... ..+
T Consensus 4 ~l~i~~v-~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDL-NIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeE-EEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4566666 8888653 58999999999999999999999999999999997532 111
Q ss_pred -----eeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538 72 -----RIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 -----~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.++++.+++.. ...++++.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 122222210 01100 1234556788888742 122356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~ 209 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQ 209 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 98774 79999999999988765 3699999999754
No 196
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=7.7e-28 Score=205.86 Aligned_cols=141 Identities=18% Similarity=0.295 Sum_probs=104.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh----hcceeeeccccc-------h--
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR----RQKLRIGRHSRH-------L-- 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~----~~~~~~~~~~~~-------~-- 80 (158)
++.+.++ +++|++. .+|+|+||+|.+|+++||+||||||||||+++|++.. .....+.+..|. .
T Consensus 177 ~I~i~nl-s~~y~~~--~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENF-SISVGGR--DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceE-EEEeCCC--EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5666666 9999643 4899999999999999999999999999999998632 111222221110 0
Q ss_pred --------------------h------------------------hH-----------------hhHHHHHHHHHHHcCC
Q 044538 81 --------------------E------------------------DL-----------------LTMEEAVHAKLRKFGL 99 (158)
Q Consensus 81 --------------------~------------------------~~-----------------~~~~~~~~~~l~~~~l 99 (158)
. +. +..++++..++..+|+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 0 00 0011344556777777
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 100 PGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 100 ~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
.....++++.+||||||||++||++++. +||+.++.++.+.|++++.|||+||||.++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 5433446779999999999999988775 799999999999999999999999999764
No 197
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.5e-27 Score=179.96 Aligned_cols=137 Identities=26% Similarity=0.344 Sum_probs=100.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecc
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRH 76 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~ 76 (158)
+.+.++ ++.|+.. ..++||++.+|++++|+||||||||||+++|++.... ...+++.
T Consensus 2 l~~~~l-~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDI-TWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEE-EEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 445555 8888642 2389999999999999999999999999999864211 0123333
Q ss_pred ccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 77 SRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 77 ~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
++.. .+.+ ...+++.++++.++++...+ +++.+||||||||++||++++.
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-RLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3211 1110 01245677899999976544 5678999999999999988775
Q ss_pred ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|+|++|||+++
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~ 192 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLED 192 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 69999999998888654 4699999999864
No 198
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.95 E-value=1.4e-27 Score=183.84 Aligned_cols=143 Identities=24% Similarity=0.311 Sum_probs=103.6
Q ss_pred hhhhheeeeEEcCCC-------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------
Q 044538 14 MLQLIEVISFSYPNL-------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------- 69 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------- 69 (158)
++.+.++ ++.|+.. .+.+++|+||+|.+|++++|+||||||||||+++|++....
T Consensus 3 ~l~~~nl-~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 3 LLNVSGL-SHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred eEEEece-EEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 4666666 8888731 24689999999999999999999999999999999864210
Q ss_pred ------ceeeeccccch----------hhHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHH
Q 044538 70 ------KLRIGRHSRHL----------EDLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 70 ------~~~~~~~~~~~----------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 120 (158)
...+++.++.. .+.. .....+.++++.+++.....++++.+|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 01233333221 0000 011346778899999632233567899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++ +.|+|++|||+++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~ 214 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRL 214 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHH
Confidence 9998775 69999988888877654 5799999999754
No 199
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-27 Score=183.85 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=93.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccccch--hhH--
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHSRHL--EDL-- 83 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~~~~--~~~-- 83 (158)
-++|+||+++.||++.|+|-||||||||+|++.....+ +..++.++|.+ .+.
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999743211 11222233322 111
Q ss_pred ----------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538 84 ----------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV 135 (158)
Q Consensus 84 ----------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~ 135 (158)
....+++.++++.+||..+.+ +++++|||||||||.+|||+.. .|||--+.
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~-~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD-KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh-cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 112467888999999998877 4569999999999999999765 57875554
Q ss_pred H----HHHHHhhcCCeEEEEeecCCCC
Q 044538 136 A----VAVTLDEFAGGVVLVSHDSRLI 158 (158)
Q Consensus 136 ~----l~~~l~~~~~tvi~vtHd~~~~ 158 (158)
+ ++++-+++++||||||||++++
T Consensus 202 ~mQdeLl~Lq~~l~KTIvFitHDLdEA 228 (386)
T COG4175 202 EMQDELLELQAKLKKTIVFITHDLDEA 228 (386)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCHHHH
Confidence 4 4444456678999999998763
No 200
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.95 E-value=1.3e-27 Score=179.50 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=100.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee------------eecccc-
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR------------IGRHSR- 78 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~------------~~~~~~- 78 (158)
+.+.++ ++.|+. .++++++||+|++|++++|+||||||||||++++++.... .+. .++.+.
T Consensus 23 l~~~~~-~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGR-KGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhh-hhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 344444 777765 3589999999999999999999999999999999975321 110 011110
Q ss_pred chhhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538 79 HLEDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134 (158)
Q Consensus 79 ~~~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~ 134 (158)
...+.+ ...+++.++++.+++.+... +++.+||||||||++||++++. +||+.++
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~ 178 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFID-LPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQ 178 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 001111 01234566788889976544 5779999999999999988775 6999999
Q ss_pred HHHHHHHhhc---CCeEEEEeecCCC
Q 044538 135 VAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 135 ~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
..+.+.+++. +.|||++|||.++
T Consensus 179 ~~~~~~l~~~~~~~~tiii~sH~~~~ 204 (224)
T cd03220 179 EKCQRRLRELLKQGKTVILVSHDPSS 204 (224)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9888888664 4699999999754
No 201
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=181.87 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=104.0
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|+. +++|+++||++.+||+++|+||||||||||+++|++... ..+
T Consensus 18 ~~~l~~~nl-~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDL-HVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeE-EEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 456777776 888864 358999999999999999999999999999999997542 100
Q ss_pred -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+.+. ..+++.++++.+++.. ....+++.+|||||+||++|
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 123322211 01000 1233456678888742 12235678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.+++.. .|||++|||+++
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 224 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQ 224 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 998775 699999999998887653 699999999754
No 202
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=180.94 Aligned_cols=142 Identities=23% Similarity=0.307 Sum_probs=102.8
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--------hcce-------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--------RQKL------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--------~~~~------------- 71 (158)
+++.+.++ ++.|+. ..+++++||+|.+|++++|+||||||||||+++|++.. ...+
T Consensus 2 ~~l~~~~~-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDV-NFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEE-EEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 46666666 888865 35899999999999999999999999999999998631 1100
Q ss_pred ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538 72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.++++.+++.+. ...+++.+||||||||++||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 123322210 01110 11345677888888531 12356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.++++. .|||++|||+++
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 207 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 88775 699999999999887753 699999999753
No 203
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=1.5e-27 Score=199.66 Aligned_cols=141 Identities=23% Similarity=0.386 Sum_probs=105.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh--
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE-- 81 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~-- 81 (158)
.|+.+.++ +++|++. .++|+|+||+|++|++++|+||||||||||+++|++...+ ...+++.++...
T Consensus 3 ~~i~~~nl-s~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 3 YIYTMNRV-SKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEEeeE-EEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 46666666 9999732 3589999999999999999999999999999999975321 123444433210
Q ss_pred ------hHhh------------------------------------------------HHHHHHHHHHHcCCCCCCCCCC
Q 044538 82 ------DLLT------------------------------------------------MEEAVHAKLRKFGLPGHNHLTP 107 (158)
Q Consensus 82 ------~~~~------------------------------------------------~~~~~~~~l~~~~l~~~~~~~~ 107 (158)
+... ...++.++++.++++. . +++
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~ 158 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-W-DAD 158 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-c-cCc
Confidence 0000 0012344566677753 2 357
Q ss_pred CCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 108 IANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 108 ~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+.+|||||||||+||++++. +||+.+..++.+.+++++.|||+||||+++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~ 220 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYF 220 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 79999999999999988775 799999999999999988899999999764
No 204
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=185.05 Aligned_cols=144 Identities=24% Similarity=0.292 Sum_probs=103.2
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL----------- 71 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~----------- 71 (158)
.++++.+.++ ++.|+.. .+|+|+||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 36 ~~~~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~ 112 (286)
T PRK14275 36 GKPHVVAKNF-SIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF 112 (286)
T ss_pred CceEEEEeee-EEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc
Confidence 3456676666 8888643 48999999999999999999999999999999998421 100
Q ss_pred --------eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHH
Q 044538 72 --------RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 72 --------~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 120 (158)
.+++.++.. .+.+ ...+.+.++++.+++.. ...++++.+||||||||++
T Consensus 113 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~ 192 (286)
T PRK14275 113 TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLC 192 (286)
T ss_pred cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHH
Confidence 123322221 0000 01233456677777632 1223567899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++. .|||++|||.++
T Consensus 193 LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~ 243 (286)
T PRK14275 193 VARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQ 243 (286)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 9998775 799999999999997763 589999999764
No 205
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.95 E-value=2.9e-27 Score=178.72 Aligned_cols=139 Identities=24% Similarity=0.324 Sum_probs=96.0
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeecc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRH 76 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~ 76 (158)
+.++ ++.|+....++++++||++++|++++|+||||||||||+++|++.... +..+++.
T Consensus 3 ~~~l-~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (237)
T cd03252 3 FEHV-RFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVV 81 (237)
T ss_pred EEEE-EEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEE
Confidence 3444 888865334689999999999999999999999999999999964211 0123443
Q ss_pred ccch--h-----hHhhH------HHHHH---------HHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 77 SRHL--E-----DLLTM------EEAVH---------AKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 77 ~~~~--~-----~~~~~------~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.. . +.+.. .+.+. +.++.+ ++..... +++.+|||||||||+||++++.
T Consensus 82 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 82 LQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred cCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhh-cCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 3321 0 11000 11122 223333 3333222 4678999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 199 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLST 199 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 69999999999988765 4699999999864
No 206
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.95 E-value=1.5e-27 Score=180.52 Aligned_cols=127 Identities=24% Similarity=0.299 Sum_probs=95.2
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeeccc-cc--hh------
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRHS-RH--LE------ 81 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~~-~~--~~------ 81 (158)
.++|+++||+|++|++++|+||||||||||+++|++...+ ...+++.+ +. +.
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 4689999999999999999999999999999999964211 01233322 11 10
Q ss_pred hHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 82 DLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 82 ~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
+.+. ..+.+.++++.+++.+... +++.+||||||||++||++++. +||+.+...+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEELLD-TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 1110 1234566788889976544 5678999999999999988775 6999999999
Q ss_pred HHHHhhc----CCeEEEEeecCCC
Q 044538 138 AVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 138 ~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.+.+.++ +.|||++|||+++
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~~~ 216 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYMKD 216 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHH
Confidence 9988765 4699999999764
No 207
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.2e-27 Score=178.47 Aligned_cols=136 Identities=23% Similarity=0.299 Sum_probs=101.0
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|+. .+++++||+|.+||+++|+||||||||||+++|++.... ...+++.++
T Consensus 3 ~~~l-~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 3 VENL-SKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred eEeE-EEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 3344 778864 279999999999999999999999999999999864211 012333222
Q ss_pred ch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. . +.+ ...+.+.++++.+++..... +++.+|||||+||++||++++.
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt 157 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-RKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 10 0 111 01234567889999976554 5678999999999999998775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.+++. +.|+|++|||+++
T Consensus 158 ~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~ 192 (235)
T cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 69999999999988764 5799999999754
No 208
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.2e-27 Score=182.51 Aligned_cols=143 Identities=19% Similarity=0.316 Sum_probs=103.9
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------ 71 (158)
++++.+.++ +++|+. .++++|+||+|++||+++|+||||||||||+++|++.... .+
T Consensus 19 ~~~l~i~nl-~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 95 (276)
T PRK14271 19 APAMAAVNL-TLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95 (276)
T ss_pred CcEEEEeeE-EEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch
Confidence 567777776 999974 3589999999999999999999999999999999975321 00
Q ss_pred ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538 72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.++++.+++... ...+++.+|||||+||++||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred hHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 122322211 11110 01223456788888532 12245789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.|+++ ..|||++|||+++
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 224 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQ 224 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 98775 69999999999888765 3699999999764
No 209
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.1e-27 Score=180.95 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=102.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-------------- 71 (158)
++.+.++ +++|+. .++|+++||+|.+||+++|+||||||||||+++|++... ..+
T Consensus 4 ~l~~~~l-~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDV-HLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEee-EEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5666666 888864 358999999999999999999999999999999997642 100
Q ss_pred -----eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHH
Q 044538 72 -----RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 -----~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. .+.+. ..+.+.++++.+++.. ...++++.+|||||+||++||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 122222210 01110 1124556778888842 1123567899999999999998
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 208 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQ 208 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 8765 69999999999988776 4699999999764
No 210
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.95 E-value=1.3e-27 Score=198.44 Aligned_cols=139 Identities=13% Similarity=0.203 Sum_probs=102.3
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+++.+.++ ++.|. .+|+|+||+|++|++++|+||||||||||+++|++.... +.
T Consensus 264 ~~l~~~~l-~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 264 TVFEVRNV-TSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred cEEEEeCc-cccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 46666555 65542 279999999999999999999999999999999864210 01
Q ss_pred eeeccccc-----h------hhHh---------------------hHHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHH
Q 044538 72 RIGRHSRH-----L------EDLL---------------------TMEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVR 118 (158)
Q Consensus 72 ~~~~~~~~-----~------~~~~---------------------~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqr 118 (158)
.+++.++. + .+.+ ...+.+.++++.+++. +.. ++++.+||||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGq~qr 417 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSV-NQNITELSGGNQQK 417 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCc-cCccccCChHHHHH
Confidence 24444432 1 0000 0112456789999996 444 46789999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
|+||++++. +||+.+...+.+.++++ +.|||+||||+++
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~ 471 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPE 471 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 999988764 69999999999988654 5799999999764
No 211
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.95 E-value=2.4e-27 Score=177.34 Aligned_cols=141 Identities=23% Similarity=0.240 Sum_probs=99.2
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
.+.++ ++.|+.....+++++||+|++|++++|+||||||||||+++|++.... +..+++
T Consensus 4 ~~~~l-~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 4 EFKNV-SLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEE-EEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 34455 888875434689999999999999999999999999999999964211 011333
Q ss_pred cccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh------
Q 044538 76 HSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 76 ~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
.++.. .+.+. ..+++.+.++.+++.+... ..++..|||||+||++||++++.
T Consensus 83 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 162 (221)
T cd03244 83 IPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILV 162 (221)
T ss_pred ECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 33221 01100 1133445555555543211 13568999999999999988775
Q ss_pred ------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|||++|||.++
T Consensus 163 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (221)
T cd03244 163 LDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDT 200 (221)
T ss_pred EeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 69999999999999775 3689999999754
No 212
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.95 E-value=4.8e-27 Score=176.38 Aligned_cols=144 Identities=24% Similarity=0.380 Sum_probs=103.5
Q ss_pred chhhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------c
Q 044538 12 SPMLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------K 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~ 70 (158)
.+++.+.++ ++.|++.. ..+++++||+|++|++++|+||||||||||+++|++.... .
T Consensus 9 ~~~l~~~~l-~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 9 KGIVKFQNV-TFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred CceEEEEEE-EEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 457777776 99997532 3589999999999999999999999999999999964211 0
Q ss_pred eeeeccccch--h-----hHhh-------H---HH-----HHHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 71 LRIGRHSRHL--E-----DLLT-------M---EE-----AVHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 71 ~~~~~~~~~~--~-----~~~~-------~---~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
..+++.++.. . +.+. . .+ .+.++++.+ |+..... .++.+|||||+||++||++++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~-~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVG-EKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHh
Confidence 1133332221 0 0000 0 01 123456667 6765444 457899999999999998877
Q ss_pred h------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++. .|+|++|||+++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 211 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLST 211 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 5 699999999999887653 699999999764
No 213
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.8e-27 Score=180.31 Aligned_cols=142 Identities=25% Similarity=0.303 Sum_probs=101.9
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--------hcce-------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--------RQKL------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--------~~~~------------- 71 (158)
+++.+.++ ++.|+.. .+++++||+|++||+++|+||||||||||+++|++.. ...+
T Consensus 4 ~~l~~~~l-~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 4 PILQVSDL-SVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred ceEEEEee-EEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 46776666 8888743 5899999999999999999999999999999998641 1110
Q ss_pred ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538 72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.++++.+++... ...+++.+||||||||++||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 123322211 01110 11234456777776421 12356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~ 209 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQ 209 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHH
Confidence 88775 69999999999988775 3699999999753
No 214
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.95 E-value=6.1e-27 Score=175.29 Aligned_cols=139 Identities=27% Similarity=0.368 Sum_probs=102.1
Q ss_pred hhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----------------------c
Q 044538 16 QLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----------------------K 70 (158)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----------------------~ 70 (158)
.+.++ ++.|+.+ ...+++++||++++|++++|+||||||||||+++|++.... +
T Consensus 3 ~~~~l-~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 3 SIRNL-NHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEE-EEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 34455 8888643 14589999999999999999999999999999999964210 0
Q ss_pred eeeeccccch--------hhHh----------h---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 71 LRIGRHSRHL--------EDLL----------T---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 71 ~~~~~~~~~~--------~~~~----------~---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
..+++.++.. .+.. . ..+.+.++++.+++.+... +++.+||+|||||++||++++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-YYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-cChhhCCHHHHHHHHHHHHHhcCC
Confidence 1233332221 0000 0 1235678889999976544 5678999999999999988774
Q ss_pred ----------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
+||+.++..+.+.++++ +.|+|++|||++
T Consensus 161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~ 203 (220)
T TIGR02982 161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR 203 (220)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 69999998888888654 579999999975
No 215
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=2.9e-27 Score=181.16 Aligned_cols=143 Identities=24% Similarity=0.315 Sum_probs=104.1
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|+.. .+|+|+||+|++|++++|+||||||||||+++|++... ..+
T Consensus 11 ~~~l~~~~l-~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNL-NFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEE-EEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456776666 8888643 58999999999999999999999999999999997632 111
Q ss_pred -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+.+. ..+++.++++.+++.. ...++++.+|||||+||++|
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 122322211 01000 1234567788888742 11234668999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~ 217 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQ 217 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 998775 69999999999988776 3699999999753
No 216
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3e-27 Score=180.01 Aligned_cols=141 Identities=24% Similarity=0.313 Sum_probs=101.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc---------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK--------------- 70 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~--------------- 70 (158)
|+.+.++ ++.|+. .++++++||++++||+++|+||||||||||+++|++... ..
T Consensus 3 ~l~~~~l-~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENF-SAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEee-EEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5566666 888864 358999999999999999999999999999999996432 10
Q ss_pred ----eeeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538 71 ----LRIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 71 ----~~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~ 123 (158)
..+++.++.. .+.+. ..+.+.++++.+++... ...+++.+|||||+||++||+
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 0122222210 01110 11234556777887532 123567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+++. +||+.++..+.+.+.++ +.|+|++|||++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~ 207 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQ 207 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8775 69999999999988765 3699999999763
No 217
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.95 E-value=4.3e-27 Score=175.31 Aligned_cols=135 Identities=23% Similarity=0.289 Sum_probs=99.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|+. .+.++||++++|++++|+||||||||||+++|++.... +..+++.++
T Consensus 3 ~~~l-~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 3 LDKV-RYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred EEee-eEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 3444 888862 36799999999999999999999999999999964211 011333322
Q ss_pred ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. .+... ..+++.++++.+++.+..+ +++.+|||||+||++||++++.
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt 156 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLD-RLPEQLSGGQRQRVALARCLVRPNPILLLDEPF 156 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 21 11110 1235667899999976544 5678999999999999988765
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|||+||||.++
T Consensus 157 ~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~ 191 (213)
T TIGR01277 157 SALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191 (213)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999988888664 4699999999754
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.3e-27 Score=179.95 Aligned_cols=143 Identities=22% Similarity=0.296 Sum_probs=102.0
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc-------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK------------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~------------- 70 (158)
.+|+.+.++ ++.|+. ..+|+++||+|.+|++++|+||||||||||+++|++... ..
T Consensus 3 ~~~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14255 3 KKIITSSDV-HLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE 79 (252)
T ss_pred cceEEEEeE-EEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence 356777666 899874 358999999999999999999999999999999987421 10
Q ss_pred ------eeeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHH
Q 044538 71 ------LRIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 71 ------~~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~i 121 (158)
..+++.++.. .+.+. ..+.+.+.++.+++.. ....+++.+||||||||++|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 80 DVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred cHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 0133333221 00000 0123344566676531 11234678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.++++ +.|+|++|||+++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 209 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 988775 69999999999988776 3699999999764
No 219
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.3e-27 Score=180.09 Aligned_cols=143 Identities=23% Similarity=0.303 Sum_probs=103.8
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
++++.+.++ ++.|+.. .+|+++||+|++||+++|+||||||||||+++|++... ..+
T Consensus 10 ~~~l~i~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 10 QEVYQINGM-NLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CceEEEeeE-EEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 457777776 8888743 58999999999999999999999999999999987532 111
Q ss_pred -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+.+. ..+++.++++.+++.+. ...+++.+||||||||++|
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~l 166 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCI 166 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHH
Confidence 122222210 01000 01234556778887531 1235678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.+.++ +.|+|++|||++.
T Consensus 167 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~ 216 (259)
T PRK14274 167 ARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQ 216 (259)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 988775 69999999999988776 3699999999753
No 220
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.95 E-value=1.8e-27 Score=203.46 Aligned_cols=141 Identities=24% Similarity=0.331 Sum_probs=105.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+.+.++ +|+|+...+++|+|+||++++||.++|+||||||||||+++|++...+ +..++
T Consensus 452 I~~~nv-sf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 452 IEVDRV-TFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred EEEEEE-EEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 556666 999975545789999999999999999999999999999999864321 11244
Q ss_pred ccccch-------hhHh-----hHHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh-----
Q 044538 75 RHSRHL-------EDLL-----TMEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~-----~~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
+.+|+. .++. ..++++.++++..++.+... + .....||||||||++||||++.
T Consensus 531 ~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 531 VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 444431 1111 12456677777777653211 1 1235799999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 128 -------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+++.+.|+|+|||+++
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~ 646 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLS 646 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChH
Confidence 69999999999999988889999999875
No 221
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.9e-27 Score=179.39 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=100.0
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce---------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------- 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------- 71 (158)
+.+.++ ++.|++. .+++|+||+|++||+++|+||||||||||+++|++... ..+
T Consensus 4 l~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 4 ISVKDL-DLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred EEEEEE-EEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 445555 8888653 58999999999999999999999999999999997421 100
Q ss_pred ----eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHHH
Q 044538 72 ----RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 72 ----~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
.+++.++.. .+.+ ...+.+.++++.+++.. ...++++.+|||||+||++||++
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARA 160 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 123322221 0000 01234455677777642 11235678999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++. +||+.++..+.+.++++ +.|||++|||++.
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 207 (250)
T PRK14240 161 LAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQ 207 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 775 69999999999988765 3699999999763
No 222
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.95 E-value=1.9e-27 Score=179.77 Aligned_cols=141 Identities=22% Similarity=0.283 Sum_probs=100.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+|+.+.++ ++.|+. ..+++++||+|.+||+++|+||||||||||+++|++.... ..
T Consensus 4 ~~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKV-SAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeE-EEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 46666666 888864 3589999999999999999999999999999999864210 01
Q ss_pred eeeccccch--------hhHhh----------HHHHHHHHHHHc-CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 72 RIGRHSRHL--------EDLLT----------MEEAVHAKLRKF-GLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 72 ~~~~~~~~~--------~~~~~----------~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
.+++.++.. .+.+. ..+.+.++++.+ ++.+... .++.+||||||||++||++++.
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~-~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRI-QRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHh-CchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 133332210 11110 122345566666 4654333 4678999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQ 199 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence 69999999998887654 5799999999753
No 223
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.95 E-value=4.3e-27 Score=170.88 Aligned_cols=134 Identities=22% Similarity=0.311 Sum_probs=90.2
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR 95 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (158)
+.++ +++|+....++++++||++++||+++|+||||||||||+++|++..... ..+-......... ....+ .
T Consensus 3 ~~~~-~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~---~~~~~---~ 75 (178)
T cd03247 3 INNV-SFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL---EKALS---S 75 (178)
T ss_pred EEEE-EEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH---HHHHH---h
Confidence 3444 8888754335899999999999999999999999999999999864321 1111111111000 00001 1
Q ss_pred HcCCCC--------CCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEee
Q 044538 96 KFGLPG--------HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSH 153 (158)
Q Consensus 96 ~~~l~~--------~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtH 153 (158)
.+++-. ...+..+.+|||||+||++||++++. +||+.+...+.+.+++. +.|+|++||
T Consensus 76 ~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 155 (178)
T cd03247 76 LISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155 (178)
T ss_pred hEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 111100 00000157899999999999998775 69999999999988765 479999999
Q ss_pred cCCC
Q 044538 154 DSRL 157 (158)
Q Consensus 154 d~~~ 157 (158)
|.++
T Consensus 156 ~~~~ 159 (178)
T cd03247 156 HLTG 159 (178)
T ss_pred CHHH
Confidence 9764
No 224
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=3.6e-27 Score=179.71 Aligned_cols=143 Identities=21% Similarity=0.291 Sum_probs=103.2
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
+|++.+.++ ++.|+. ..+|+++||+|++||+++|+||||||||||+++|++... ..+
T Consensus 2 ~~~l~~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 78 (251)
T PRK14270 2 KIKMESKNL-NLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV 78 (251)
T ss_pred ccEEEEEEe-EEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc
Confidence 356776666 888864 358999999999999999999999999999999997531 111
Q ss_pred -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. .+.+. ..+++.++++.+++.+. ...+++.+||||||||++|
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 79 DVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred cHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 122222211 01110 01234567888887421 1235678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
|++++. +||+.+...+.+.++++ +.|+|++|||+++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~ 208 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQ 208 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHH
Confidence 988764 69999999999988765 3699999999764
No 225
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=1.4e-27 Score=181.79 Aligned_cols=133 Identities=20% Similarity=0.362 Sum_probs=97.0
Q ss_pred EEcCCCCCcceeeeeEEee-----CCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----eeeccccch--------h
Q 044538 23 FSYPNLQDIRLSNVDMGID-----MGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----RIGRHSRHL--------E 81 (158)
Q Consensus 23 ~~~~~~~~~~l~~isl~i~-----~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----~~~~~~~~~--------~ 81 (158)
|+|++..+ .+++++|++. +|++++|+||||||||||+++|++..... + .+++.++.. .
T Consensus 1 ~~y~~~~~-~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~ 79 (246)
T cd03237 1 YTYPTMKK-TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVR 79 (246)
T ss_pred CCCccccc-ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHH
Confidence 35665443 6788888886 79999999999999999999999753211 1 344443321 1
Q ss_pred hHhh--------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538 82 DLLT--------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141 (158)
Q Consensus 82 ~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l 141 (158)
+.+. ......++++.+++....+ +++.+||||||||++||++++. +||+.++..+.+.+
T Consensus 80 e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 80 DLLSSITKDFYTHPYFKTEIAKPLQIEQILD-REVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHhhhccccHHHHHHHHHHcCCHHHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 1111 0123456788899976544 5679999999999999988775 69999999998888
Q ss_pred hhc----CCeEEEEeecCCC
Q 044538 142 DEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 142 ~~~----~~tvi~vtHd~~~ 157 (158)
+++ +.|||+||||+++
T Consensus 159 ~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 159 RRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred HHHHHhcCCEEEEEeCCHHH
Confidence 765 5799999999754
No 226
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.95 E-value=3.8e-27 Score=181.72 Aligned_cols=139 Identities=23% Similarity=0.259 Sum_probs=102.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-----------ee-----------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-----------LR----------- 72 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-----------~~----------- 72 (158)
+.+.++ ++.|++. .+|+++||+|.+|++++|+||||||||||+++|++..... +.
T Consensus 2 l~~~nl-~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHL-HVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEE-EEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 455565 8888653 5899999999999999999999999999999999753211 11
Q ss_pred ------eeccccch--------hhHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 73 ------IGRHSRHL--------EDLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 73 ------~~~~~~~~--------~~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
+++.++.. .+.+. ..+.+.++++.+++..... +++.+|||||+|||+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVG-RDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhc-CCcccCCHHHHHHHHHH
Confidence 12222210 01000 1134567888999976554 56799999999999999
Q ss_pred HHHh---------h------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 123 LVSM---------Y------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l---------~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
++++ . +||+.+...+.+.++++ +.|||+||||+++
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~ 217 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 9988 2 59999999999888654 5799999999753
No 227
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.95 E-value=4.7e-27 Score=178.64 Aligned_cols=140 Identities=21% Similarity=0.262 Sum_probs=101.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------cce-----------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKL----------------- 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~----------------- 71 (158)
+.+.++ ++.|+. ..+|+|+||++.+|++++|+||||||||||+++|++... ..+
T Consensus 3 ~~~~~l-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 3 AKTTNL-NLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred eeeeee-EEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 344555 888874 358999999999999999999999999999999997531 100
Q ss_pred eeeccccch-------hhHh--------------hHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHHHhh
Q 044538 72 RIGRHSRHL-------EDLL--------------TMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 72 ~~~~~~~~~-------~~~~--------------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
.+++.++.. .+.+ ...+++.++++.+++.+. ..++++.+|||||+||++||++++.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 159 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI 159 (246)
T ss_pred hEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 133333221 1111 011245678899998531 1234668999999999999998775
Q ss_pred ------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.++ +.|+|++|||+++
T Consensus 160 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 160 KPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 69999999999888764 5799999999763
No 228
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.4e-27 Score=172.02 Aligned_cols=139 Identities=24% Similarity=0.325 Sum_probs=99.1
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeee-----------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIG----------------- 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~----------------- 74 (158)
+...|+ +++..++ .+++++||++.+||+.+|+||||||||||++.++|..... ..++
T Consensus 2 i~a~nl-s~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENL-SYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeee-EEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 444455 6665543 4799999999999999999999999999999999743211 0000
Q ss_pred ccccc--------hhhH------------h--hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 75 RHSRH--------LEDL------------L--TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 75 ~~~~~--------~~~~------------~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
..+|+ ..+. . ...+.+++++...++..... +-+.+|||||||||.+||.+..
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-R~y~~LSGGEqQRVqlARvLaQl~~~v 157 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-RDYRTLSGGEQQRVQLARVLAQLWPPV 157 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-cchhhcCchHHHHHHHHHHHHHccCCC
Confidence 01110 0010 0 11233678899999987765 4457999999999999887653
Q ss_pred -------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
.||..-+..++++.+++ +..|+.|-||+++
T Consensus 158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL 203 (259)
T COG4559 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL 203 (259)
T ss_pred CCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH
Confidence 58888888777777766 4689999999986
No 229
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=2.3e-27 Score=199.49 Aligned_cols=141 Identities=24% Similarity=0.342 Sum_probs=107.7
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----eeeeccccchh---
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----LRIGRHSRHLE--- 81 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----~~~~~~~~~~~--- 81 (158)
.+++.+.++ ++.|++. .|+++||+|.+||+++|+||||||||||+++|++.... . ..+++.+|...
T Consensus 338 ~~~l~~~~l-s~~~~~~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDL-TKKLGDF---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEEcce-EEEECCE---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCC
Confidence 356777666 8888642 48999999999999999999999999999999975431 1 23455544321
Q ss_pred -----hHhh-------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 82 -----DLLT-------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 82 -----~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
+.+. ....+.++++.+++.+.. ++++.+|||||||||+||++++. +||+.++..+
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l 492 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLL-DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAV 492 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHH-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 1111 112456788999997644 46789999999999999988764 7999999999
Q ss_pred HHHHhhc----CCeEEEEeecCCC
Q 044538 138 AVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 138 ~~~l~~~----~~tvi~vtHd~~~ 157 (158)
.+.++++ +.|+|+||||+++
T Consensus 493 ~~~l~~l~~~~g~tviivsHD~~~ 516 (590)
T PRK13409 493 AKAIRRIAEEREATALVVDHDIYM 516 (590)
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9988765 5799999999764
No 230
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=4.9e-27 Score=195.60 Aligned_cols=139 Identities=31% Similarity=0.419 Sum_probs=102.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----------------eeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----------------RIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----------------~~~~ 75 (158)
+.+.++ +|+|++.. ++|+|+||++++|+.++|+||||||||||++++++...+ .+ .+++
T Consensus 335 I~~~~v-sf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 335 LELRDL-SFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred EEEEEE-EEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 556665 99997643 589999999999999999999999999999999864321 11 2445
Q ss_pred cccch-------hhHhh------HHHHHHHHHHHcCCCCCCC------CC----CCCCCChHHHHHHHHHHHHhh-----
Q 044538 76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH------LT----PIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~------~~----~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
.+|.. .++.. .++++.++++..++++... +. ....||||||||++||||++.
T Consensus 413 V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 413 FAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred EccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 44432 11111 2356777787777643211 11 235799999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDS 155 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~ 155 (158)
+||+++...+.+.+.+. +.|+|+|||++
T Consensus 493 iLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 69999999999999876 47999999984
No 231
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6e-27 Score=183.30 Aligned_cols=143 Identities=23% Similarity=0.291 Sum_probs=103.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc-------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK------------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~------------- 70 (158)
++++.+.++ ++.|+.. .+|+++||+|.+|++++|+||||||||||+++|++... ..
T Consensus 43 ~~~l~i~nl-~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDL-DVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEE-EEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346676666 8888753 58999999999999999999999999999999997632 10
Q ss_pred ------eeeeccccchh-------hHhh-------------------------HHHHHHHHHHHcCCCC---CCCCCCCC
Q 044538 71 ------LRIGRHSRHLE-------DLLT-------------------------MEEAVHAKLRKFGLPG---HNHLTPIA 109 (158)
Q Consensus 71 ------~~~~~~~~~~~-------~~~~-------------------------~~~~~~~~l~~~~l~~---~~~~~~~~ 109 (158)
..+++.++... +.+. ..+.+.++++.+++.. ....+++.
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 199 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNAL 199 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccc
Confidence 01233332210 0000 0233556777787742 11234668
Q ss_pred CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 110 NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 110 ~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+|||||+||++||++++. +||+.+...+.+.|+++ +.|||++|||+++
T Consensus 200 ~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 261 (305)
T PRK14264 200 GLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQ 261 (305)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHH
Confidence 999999999999998775 69999999999999876 3699999999754
No 232
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.4e-27 Score=190.72 Aligned_cols=143 Identities=31% Similarity=0.388 Sum_probs=107.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee-----------------e
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR-----------------I 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~-----------------~ 73 (158)
.+++.++ +|+|++.+.++|+|+||++.+||.++|+|++|||||||+.++.+.... .+. +
T Consensus 336 ~l~~~~v-sF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNV-SFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eeeeccc-eeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHH
Confidence 4566666 999999887899999999999999999999999999999999853221 111 1
Q ss_pred eccccc--h-----hhHhh------HHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRH--L-----EDLLT------MEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~--~-----~~~~~------~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+...|. + .+++. .++++.++++++|+.+..... -...|||||+||++|||+++.
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap 494 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP 494 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence 111111 0 11111 146788889998886533322 235899999999999999886
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+..++++.+.+. ++|+|+|||++..
T Consensus 495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~ 535 (573)
T COG4987 495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRG 535 (573)
T ss_pred eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 69999999999999765 4799999999753
No 233
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.94 E-value=4.8e-27 Score=187.23 Aligned_cols=131 Identities=24% Similarity=0.249 Sum_probs=97.9
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeeeccc
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIGRHS 77 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~~~~ 77 (158)
+++|++. .+ ++||++++|++++|+||||||||||+++|++.... +..+++.+
T Consensus 6 ~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 6 SKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 7788642 25 99999999999999999999999999999964211 01133333
Q ss_pred cch--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 78 RHL--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 78 ~~~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
+.. .+.+. ..+++.++++.+++.+..+ +++.+||||||||++||++++.
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts 160 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 221 11111 1234678899999986554 5679999999999999998775
Q ss_pred CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|+||||+++
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~ 194 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE 194 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 69999999988888654 5799999999754
No 234
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=7.6e-27 Score=172.86 Aligned_cols=139 Identities=24% Similarity=0.283 Sum_probs=94.4
Q ss_pred hheeeeEEcCCCC---CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e----eeeccccchh-----
Q 044538 17 LIEVISFSYPNLQ---DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----RIGRHSRHLE----- 81 (158)
Q Consensus 17 ~~~~~~~~~~~~~---~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----~~~~~~~~~~----- 81 (158)
+.++ ++.|++.. .++++++||+|++|++++|+||||||||||+++|++..... + .+++.++...
T Consensus 3 ~~~l-~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t 81 (204)
T cd03250 3 VEDA-SFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGT 81 (204)
T ss_pred EeEE-EEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCc
Confidence 4455 88887542 35899999999999999999999999999999999754321 1 2444433310
Q ss_pred --hHhh-----HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 82 --DLLT-----MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 82 --~~~~-----~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
+.+. ..+...+.++.+++ ..... +++.+||+|||||++||++++. +||+
T Consensus 82 ~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 82 IRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred HHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 1110 01222333333332 22222 3568999999999999988775 6999
Q ss_pred HHHHHHHH-HHhhc---CCeEEEEeecCCC
Q 044538 132 QSIVAVAV-TLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~-~l~~~---~~tvi~vtHd~~~ 157 (158)
.+...+.+ .+++. +.|||++||+.+.
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~ 190 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQL 190 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHH
Confidence 99888877 44432 4799999999754
No 235
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.94 E-value=3.6e-27 Score=200.57 Aligned_cols=142 Identities=24% Similarity=0.303 Sum_probs=105.2
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+.+.++ +|+|+....++|+|+||+|++||++||+|+||||||||+|++++...+ +..+|
T Consensus 472 I~~~nv-sf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 472 IEFENV-SFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred EEEEEE-EEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 566676 999988766799999999999999999999999999999999964321 11244
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh----
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.|+. .++.+ ..+++.+++...|..+.... .....||||||||++|||+++.
T Consensus 551 ~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 551 YVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred EEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 444431 11111 12455555555544322111 1236899999999999999775
Q ss_pred --------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||+++.+.+.+.|.+.. .|+|+|||+...
T Consensus 631 LlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~t 670 (709)
T COG2274 631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLST 670 (709)
T ss_pred EEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchH
Confidence 799999999999999886 899999998753
No 236
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=5.9e-27 Score=179.93 Aligned_cols=144 Identities=24% Similarity=0.329 Sum_probs=102.7
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL----------- 71 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~----------- 71 (158)
..|++.+.++ ++.|+.. ++|+|+||+|++||+++|+||||||||||+++|++... ..+
T Consensus 7 ~~~~l~i~~v-~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 83 (264)
T PRK14243 7 TETVLRTENL-NVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD 83 (264)
T ss_pred CceEEEEeee-EEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence 3467777776 8888653 58999999999999999999999999999999996421 110
Q ss_pred --------eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538 72 --------RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 --------~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+++.++++.+++.. ....+++.+|||||+||++||
T Consensus 84 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~la 163 (264)
T PRK14243 84 VDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIA 163 (264)
T ss_pred cChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHH
Confidence 123222211 01110 1123444566667632 112346789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.+.++. .|||++|||+++
T Consensus 164 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~ 212 (264)
T PRK14243 164 RAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQ 212 (264)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 98875 699999999999887653 699999999764
No 237
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=6.6e-27 Score=176.42 Aligned_cols=137 Identities=26% Similarity=0.339 Sum_probs=101.9
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|+.. .+++++||++.+|++++|+||||||||||+++|++.... +..+++.++
T Consensus 3 ~~~l-~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENV-SKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeE-EEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 3444 8888653 589999999999999999999999999999999964321 011233222
Q ss_pred ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. .+.+. ..+.+..+++.+++.+... +.+.+||+||+||++||++++.
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYAN-RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11 11111 1235667889999976554 5668999999999999998775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|||++|||+++
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~ 193 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE 193 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 69999999999888664 5799999999764
No 238
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.8e-27 Score=178.30 Aligned_cols=140 Identities=21% Similarity=0.348 Sum_probs=101.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce---------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------- 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------- 71 (158)
+.+.++ ++.|+. ..+|+|+||+|++||+++|+||||||||||+++|++... ..+
T Consensus 5 l~~~nl-~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 5 VKLEQL-NVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred EEEEEE-EEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 455555 888864 358999999999999999999999999999999998632 100
Q ss_pred ----eeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538 72 ----RIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 ----~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. .+.+. ..+++.++++.+++... ....++.+||||||||++||+
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 161 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR 161 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence 122222210 01110 11345667788887531 122467899999999999998
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+++. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 209 (252)
T PRK14256 162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQ 209 (252)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHH
Confidence 8764 69999999999988776 4699999999754
No 239
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.94 E-value=3.9e-27 Score=177.49 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=93.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----c-----------------eeeeccccch----hhHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----K-----------------LRIGRHSRHL----EDLLT 85 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----~-----------------~~~~~~~~~~----~~~~~ 85 (158)
+++|+||+|++|++++|+||||||||||+++|++.... . ..+++.++.. .+..+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999975432 1 1233333221 00000
Q ss_pred ------------------HHHHHHHHHHHcCCCC--CCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538 86 ------------------MEEAVHAKLRKFGLPG--HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS 133 (158)
Q Consensus 86 ------------------~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~ 133 (158)
..+++.++++.+++.. ...++++.+|||||||||+||++++. +||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 1234667889999973 12235678999999999999988775 699999
Q ss_pred HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 134 IVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 134 ~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
...+.+.+++. +.|||++|||+++
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~ 188 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGV 188 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99888888653 4699999999753
No 240
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=9.7e-27 Score=175.47 Aligned_cols=139 Identities=27% Similarity=0.389 Sum_probs=96.4
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeecc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRH 76 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~ 76 (158)
+.++ ++.|++....+++++||++++|++++|+||||||||||+++|++.... +..+++.
T Consensus 3 ~~~l-~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (234)
T cd03251 3 FKNV-TFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLV 81 (234)
T ss_pred EEEE-EEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEe
Confidence 3444 888865433589999999999999999999999999999999864211 0113332
Q ss_pred ccch-------hhHhh------HHHH---------HHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 77 SRHL-------EDLLT------MEEA---------VHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 77 ~~~~-------~~~~~------~~~~---------~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.. .+.+. ..+. +.+.++.+ ++..... .++.+||||||||++||++++.
T Consensus 82 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 82 SQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIG-ERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred CCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeec-cCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2210 11110 0011 22333444 4444333 4578999999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||+++
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 199 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLST 199 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 69999999999988765 4699999999864
No 241
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.94 E-value=4.5e-27 Score=201.75 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=105.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+++.++ +|+|+...+++|+|+||+|++||.++|+||||||||||+++|++...+ +..+
T Consensus 477 ~I~~~~v-sf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 477 YVELRNI-TFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred eEEEEEE-EEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 3556666 999986555789999999999999999999999999999999864321 1124
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|+. .++.. .++++.++++..++.+... + .....||||||||++|||+++.
T Consensus 556 ~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ 635 (710)
T TIGR03796 556 AMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 (710)
T ss_pred eEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 4444431 11111 1355666676666543111 0 1236799999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++.+.|+|+|||+++.
T Consensus 636 iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~ 674 (710)
T TIGR03796 636 ILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLST 674 (710)
T ss_pred EEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 699999999999998878899999999753
No 242
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8e-27 Score=179.89 Aligned_cols=143 Identities=23% Similarity=0.310 Sum_probs=103.4
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc-------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK------------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~------------- 70 (158)
.+++.+.++ ++.|++. .+|+++||+|++|++++|+||||||||||+++|++... ..
T Consensus 23 ~~~l~~~nl-~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNL-NLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEE-EEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 457777676 8988643 58999999999999999999999999999999987632 10
Q ss_pred ------eeeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538 71 ------LRIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 71 ------~~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i 121 (158)
..+++.++.. .+.+. ..+.+.++++.+++... ...+++.+|||||+||++|
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 0122222210 01110 01235566777887531 1234668999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
|++++. +||+.++..+.+.++++ +.|+|++|||+++
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~ 229 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQ 229 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHH
Confidence 998775 69999999999988765 3699999999754
No 243
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.94 E-value=5.9e-27 Score=192.53 Aligned_cols=144 Identities=21% Similarity=0.285 Sum_probs=105.8
Q ss_pred chhhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee-------eec----c
Q 044538 12 SPMLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR-------IGR----H 76 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~-------~~~----~ 76 (158)
.+|+.+.++ ++.|+.+. .++|+++||+|++|++++|+||||||||||+++|+|...+ .+. ++. .
T Consensus 19 ~~mL~lknL-~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~ 97 (549)
T PRK13545 19 KPFDKLKDL-FFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLN 97 (549)
T ss_pred cceeEEEEE-EEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccC
Confidence 457777776 88887642 3589999999999999999999999999999999976421 111 111 0
Q ss_pred cc-chhhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 77 SR-HLEDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 77 ~~-~~~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
.. ...+.+ ...+.+.++++.+++.+... +++.+||||||||++||++++. +||+
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 00 011110 01233556788899976544 5679999999999999988775 6999
Q ss_pred HHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 132 QSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
.++..+.+.++++ +.|||++|||+++
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~~ 205 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLSQ 205 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 9999998888665 5799999999754
No 244
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.2e-27 Score=178.24 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=102.3
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|++. .+|+|+||+|++||+++|+||||||||||+++|++... ..+
T Consensus 4 ~~~i~~~~l-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 80 (253)
T PRK14261 4 EIILSTKNL-NLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGA 80 (253)
T ss_pred cceEEEeee-EEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccccc
Confidence 457777666 8888643 58999999999999999999999999999999986421 100
Q ss_pred -------eeeccccch--h-----hHh-------------hHHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHH
Q 044538 72 -------RIGRHSRHL--E-----DLL-------------TMEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMF 121 (158)
Q Consensus 72 -------~~~~~~~~~--~-----~~~-------------~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~i 121 (158)
.+++.++.. . +.+ ...+.+.++++.+++.+. ..++++.+||||||||++|
T Consensus 81 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 81 DVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred chhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 123322221 0 000 012235566777777421 1235678999999999999
Q ss_pred HHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 122 TLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 122 a~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
|++++. +||+.++..+.+.++++ +.|||++|||+++
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~ 210 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQ 210 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHH
Confidence 998775 69999999998888765 3699999999753
No 245
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3.8e-27 Score=167.06 Aligned_cols=135 Identities=24% Similarity=0.381 Sum_probs=100.2
Q ss_pred EEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeeccccc---
Q 044538 23 FSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGRHSRH--- 79 (158)
Q Consensus 23 ~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~~~~~--- 79 (158)
+.|.....++|+++||++.+||+++|+||||||||||+++++..... +.+++|..|.
T Consensus 9 ~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paL 88 (223)
T COG4619 9 VGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPAL 88 (223)
T ss_pred HHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccc
Confidence 35555555789999999999999999999999999999999843211 1112222111
Q ss_pred ----hhhHh----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538 80 ----LEDLL----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS 133 (158)
Q Consensus 80 ----~~~~~----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~ 133 (158)
..+++ .....+...+++|++++....+++.+|||||+||++|+|-+.. .||+.+
T Consensus 89 fg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~n 168 (223)
T COG4619 89 FGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168 (223)
T ss_pred cccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhh
Confidence 11111 1235677899999999877778899999999999999876543 699999
Q ss_pred HHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 134 IVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 134 ~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
...+.+++.++ ..++++||||.+.
T Consensus 169 kr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 169 KRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred HHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 98888877654 4689999999753
No 246
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.94 E-value=6.3e-27 Score=187.53 Aligned_cols=127 Identities=22% Similarity=0.275 Sum_probs=96.6
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------------------ceeeeccccch-
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------------------KLRIGRHSRHL- 80 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------------------~~~~~~~~~~~- 80 (158)
..+++|+||+|++||+++|+||||||||||+++|++.... +..+++.+|.+
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 3579999999999999999999999999999999853210 01244433321
Q ss_pred -------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CC
Q 044538 81 -------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HL 129 (158)
Q Consensus 81 -------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~l 129 (158)
.+.. ...+++.++++.+|+.+..+ +++.+||||||||++||++++. +|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 1111 01245678899999987554 5678999999999999998775 69
Q ss_pred CHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 130 DTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 130 D~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|+..+..+.+.+.++ +.|||+||||+++
T Consensus 196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 999999998888653 5799999999864
No 247
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.1e-27 Score=193.20 Aligned_cols=133 Identities=22% Similarity=0.258 Sum_probs=100.5
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL 80 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~ 80 (158)
++.|++ .++|+|+||+|++||+++|+||||||||||+++|++.... +..+++.++..
T Consensus 5 ~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 5 SKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred EEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 788864 3589999999999999999999999999999999864210 01233333321
Q ss_pred --------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 81 --------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 81 --------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
.+.+ ...+++.++++.+++....+ +++.+|||||||||+||++++.
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPR-AKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCcc-CchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 0000 01235677889999976544 5679999999999999998774
Q ss_pred --CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.++++ +.|||++|||+++
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~ 196 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 79999999998888664 5799999999764
No 248
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=7.2e-27 Score=178.89 Aligned_cols=141 Identities=21% Similarity=0.304 Sum_probs=101.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-------------- 71 (158)
++.+.++ ++.|+. ..+++++||++.+||+++|+|+||||||||+++|++... ..+
T Consensus 7 ~l~~~~l-~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDL-SFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEE-EEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5666666 888864 358999999999999999999999999999999997532 100
Q ss_pred -----eeeccccch-------hhHh-------------hHHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHHH
Q 044538 72 -----RIGRHSRHL-------EDLL-------------TMEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 -----~~~~~~~~~-------~~~~-------------~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++.. .+.+ ...+.+.++++.+++.. ...++++.+|||||+||++||+
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 163 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIAR 163 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 122222211 0111 01133456777788732 1223567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+++. +||+.+...+.+.++++. .|||++|||+++
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 211 (259)
T PRK14260 164 ALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQ 211 (259)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8774 699999999999887653 699999999864
No 249
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=183.24 Aligned_cols=144 Identities=21% Similarity=0.264 Sum_probs=103.6
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cc--------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QK-------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~-------------- 70 (158)
+++.+.++ +++|.....++|+++||+|++|++++|+||||||||||+++|++... ..
T Consensus 79 ~~i~~~nl-s~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 79 NVFEIRNF-NFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred ceEEEEee-EEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 36666666 99997544568999999999999999999999999999999986531 11
Q ss_pred -----eeeeccccch-------hhHhh---------HH----HHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538 71 -----LRIGRHSRHL-------EDLLT---------ME----EAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 71 -----~~~~~~~~~~-------~~~~~---------~~----~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia 122 (158)
..+++.++.. .+.+. .. +.+..+++.+++... ....++.+||||||||++||
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 1133333221 01111 01 124556778776421 12246689999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
||++. +||+.+...+.+.+++.. .|+|+|||++++
T Consensus 238 RAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~ 286 (329)
T PRK14257 238 RAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286 (329)
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99875 699999999888887654 799999999864
No 250
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=6.7e-27 Score=177.97 Aligned_cols=141 Identities=22% Similarity=0.318 Sum_probs=100.3
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~-------------- 71 (158)
++.+.++ ++.|+. +.+++++||+|.+|++++|+||||||||||+++|++.... .+
T Consensus 3 ~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENL-DLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEecc-EEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4555565 888874 3589999999999999999999999999999999875321 00
Q ss_pred ----eeeccccch--h-----hHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH
Q 044538 72 ----RIGRHSRHL--E-----DLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 72 ----~~~~~~~~~--~-----~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
.+++.++.. . +.+. ..+++.+.++.+++.+. ..++++.+|||||+||++||++
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 122222210 0 0000 01233456677776431 1235678999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++. +||+.+...+.+.+++. +.|||++|||+++
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 206 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQ 206 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 774 69999999999988776 3699999999764
No 251
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=177.59 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=105.1
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------- 70 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------- 70 (158)
..|++.+.++ +++|++. .+++|+||++.+|++++|+||||||||||+++|++.....
T Consensus 7 ~~~~i~~~~~-~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~ 83 (257)
T PRK14246 7 AEDVFNISRL-YLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQI 83 (257)
T ss_pred hhhheeeeeE-EEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccC
Confidence 4577777777 8888753 5899999999999999999999999999999999643210
Q ss_pred ------eeeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHH
Q 044538 71 ------LRIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 71 ------~~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ 120 (158)
..+++.++.. .+.+. ..+.+.++++.+++.. ....+++..||+|||||++
T Consensus 84 ~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~ 163 (257)
T PRK14246 84 DAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLT 163 (257)
T ss_pred CHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHH
Confidence 0122222210 11110 0133566788888853 1223466899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.+.++. .|||++|||.++
T Consensus 164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~ 214 (257)
T PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQ 214 (257)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHH
Confidence 9998875 699999999999887654 799999999754
No 252
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.94 E-value=1.2e-26 Score=175.64 Aligned_cols=137 Identities=26% Similarity=0.372 Sum_probs=101.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------ceeeecccc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSR 78 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~ 78 (158)
+.++ ++.|+.. .+|+++||++.+|++++|+||||||||||+++|++.... +..+++.++
T Consensus 3 i~~l-~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 3 IANI-SKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEE-EEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 3444 8888753 589999999999999999999999999999999964211 011333222
Q ss_pred ch--------hhHhh------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 79 HL--------EDLLT------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 79 ~~--------~~~~~------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.. .+.+. ..+.+.++++.+++....+ +++.+||+||+||++||++++.
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-RYPNQLSGGQRQRVALARALAVEPQVLLLDEPF 158 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11 01110 1234567888999975544 5668999999999999988775
Q ss_pred -CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 -HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.+. +.|||++||++++
T Consensus 159 ~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~ 193 (237)
T TIGR00968 159 GALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 69999999999888764 5799999999753
No 253
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=8.1e-27 Score=177.73 Aligned_cols=141 Identities=23% Similarity=0.370 Sum_probs=98.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~-------------- 71 (158)
++.+.++ ++.|+. ..+++++||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 4 ~l~~~~l-~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDV-NIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeee-EEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4555555 888864 358999999999999999999999999999999997532 111
Q ss_pred -----eeeccccch--------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHHHHH
Q 044538 72 -----RIGRHSRHL--------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 -----~~~~~~~~~--------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.+.++.+++.. ...++++.+|||||+||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 122222211 01110 0122333455565431 112356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
++++. +||+.+...+.+.++++. .|+|++|||.++
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~ 209 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQ 209 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 88775 699999999999887764 799999999764
No 254
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.94 E-value=9.9e-27 Score=179.61 Aligned_cols=140 Identities=20% Similarity=0.259 Sum_probs=102.8
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeeecc
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIGRH 76 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~~~ 76 (158)
.+.++ +++|+.....+|+|+||+|++||+++|+||||||||||+++|++.... +..+++.
T Consensus 4 ~~~nl-s~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v 82 (275)
T cd03289 4 TVKDL-TAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVI 82 (275)
T ss_pred EEEEE-EEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEE
Confidence 44555 889964444689999999999999999999999999999999864211 0123333
Q ss_pred ccch-------hhHhh-----HHHHHHHHHHHcCCCCCCCCCCCCC-----------CChHHHHHHHHHHHHhh------
Q 044538 77 SRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNHLTPIAN-----------LSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 77 ~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqkqrv~ia~~~l~------ 127 (158)
++.. .+.+. ..+++.++++.+|+..... +.+.. ||||||||++||++++.
T Consensus 83 ~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~-~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ill 161 (275)
T cd03289 83 PQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIE-QFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILL 161 (275)
T ss_pred CCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHH-hCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3321 11111 1345677888888875443 33343 99999999999999875
Q ss_pred ------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||+||||+++
T Consensus 162 lDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 199 (275)
T cd03289 162 LDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEA 199 (275)
T ss_pred EECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHH
Confidence 69999999999988764 4799999999764
No 255
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=5.2e-28 Score=175.48 Aligned_cols=139 Identities=24% Similarity=0.353 Sum_probs=102.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---------------------hcceee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---------------------RQKLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---------------------~~~~~~ 73 (158)
+.+.++ .++|.. +.+++++||+|++||+++|+|||||||||.+.++.|.. +.+..+
T Consensus 5 L~a~~l-~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 5 LVAENL-AKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEehhh-hHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 445555 777764 35899999999999999999999999999998887431 223456
Q ss_pred eccccch--hhHhh--------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL--EDLLT--------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~--~~~~~--------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
||.+|.. +..++ ..+++.++++.|.+.+..+ .+..+||||||+|+.||||+..
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~-~~a~sLSGGERRR~EIARaLa~~P~f 160 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRD-SKAYSLSGGERRRVEIARALAANPKF 160 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhc-CcccccccchHHHHHHHHHHhcCCCE
Confidence 7776642 11111 0134668899999987655 5778999999999999999775
Q ss_pred --------CCCHHHHHHHHHH---HhhcCCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVT---LDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~---l~~~~~tvi~vtHd~~~ 157 (158)
+.||-+..++.++ |++.+.+|+++.|+.++
T Consensus 161 iLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE 201 (243)
T COG1137 161 ILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE 201 (243)
T ss_pred EEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH
Confidence 5788776655554 55567899999999653
No 256
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.2e-26 Score=176.89 Aligned_cols=142 Identities=27% Similarity=0.363 Sum_probs=100.8
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce-------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------- 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------- 71 (158)
+++.+.++ ++.|+. ..+++++||+|.+|++++|+||||||||||+++|++.... .+
T Consensus 3 ~~l~~~~l-~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGV-NFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEE-EEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 45666665 888864 3589999999999999999999999999999999975321 11
Q ss_pred ------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHH
Q 044538 72 ------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 ------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. .+.+. ..+.+.++++.+++... ...+++.+|||||+||++||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 122222211 01000 01234445666776421 12356789999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~ 208 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQ 208 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 98875 69999999998888765 4799999999753
No 257
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=3.6e-27 Score=169.21 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=87.9
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR 95 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (158)
+.++ ++.|++. ++++++||++++||+++|+||||||||||+++|++..... ..+-....... .....+. .-.
T Consensus 3 ~~~l-~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~-~~~~~~~---~~~ 75 (163)
T cd03216 3 LRGI-TKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS-FASPRDA---RRA 75 (163)
T ss_pred EEEE-EEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC-cCCHHHH---Hhc
Confidence 3444 8888653 5899999999999999999999999999999999865432 11111111110 0010010 001
Q ss_pred HcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 96 KFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 96 ~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
.++ .+.+|||||+||++||++++. +||+.++..+.+.++++ +.|+|++|||.+
T Consensus 76 ~i~--------~~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 76 GIA--------MVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred CeE--------EEEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 111 123499999999999988775 69999999999988765 479999999975
No 258
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=177.35 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=101.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce--------------
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL-------------- 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~-------------- 71 (158)
++.+.++ +++|+.. .+|+|+||++++|++++|+||||||||||+++|++.... .+
T Consensus 7 ~l~~~nl-~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNL-SFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeE-EEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5666666 8888643 589999999999999999999999999999999975321 00
Q ss_pred -----eeeccccc-------hhhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHH
Q 044538 72 -----RIGRHSRH-------LEDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 -----~~~~~~~~-------~~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+++.++. ..+.+. ..+.+.++++.+++... ...+++.+|||||+||++||+
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 02222221 001110 11335567778887431 223567899999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+++. +||+.+...+.+.++++ +.|||+||||+++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~ 213 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQ 213 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 8775 69999999998888652 5799999999764
No 259
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.94 E-value=7.1e-27 Score=176.16 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=92.0
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee------------eeccccc--------hhhHh-----
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR------------IGRHSRH--------LEDLL----- 84 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~------------~~~~~~~--------~~~~~----- 84 (158)
++++||+|++|++++|+||||||||||+++|++.... .+. .++.++. ..+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 4689999999999999999999999999999965321 000 1222211 01110
Q ss_pred ---------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh
Q 044538 85 ---------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE 143 (158)
Q Consensus 85 ---------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~ 143 (158)
...+.+.++++.+++..... +++.+||||||||++||++++. +||+.+...+.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence 01234667889999976444 5678999999999999988775 7999999999988865
Q ss_pred c----CCeEEEEeecCCC
Q 044538 144 F----AGGVVLVSHDSRL 157 (158)
Q Consensus 144 ~----~~tvi~vtHd~~~ 157 (158)
+ +.|||++|||+++
T Consensus 160 ~~~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 160 IWEEHRVTVLMVTHDVDE 177 (230)
T ss_pred HHHhcCCEEEEEeCCHHH
Confidence 3 5799999999754
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.94 E-value=8.6e-27 Score=169.92 Aligned_cols=123 Identities=21% Similarity=0.276 Sum_probs=87.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L------------------ 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~------------------ 71 (158)
+++.+.++ ++.| +++++||++++|++++|+||||||||||+++|++..... +
T Consensus 3 ~~l~~~~l-~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 3 PVLEVRGL-SVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred cEEEEecc-EEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhC
Confidence 45666665 7776 699999999999999999999999999999999753211 1
Q ss_pred eeeccccc-----hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHH
Q 044538 72 RIGRHSRH-----LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSI 134 (158)
Q Consensus 72 ~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~ 134 (158)
.+++.++. +.+..+..+.+... ..||||||||++||++++. +||+.++
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~---------------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 140 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALS---------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAK 140 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHH---------------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHH
Confidence 11222211 01111111111100 1199999999999998775 6999999
Q ss_pred HHHHHHHhhc---CCeEEEEeecCCC
Q 044538 135 VAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 135 ~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
..+.+.++++ +.|+|++|||+++
T Consensus 141 ~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 141 AEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 9999988765 4799999999753
No 261
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.94 E-value=2.9e-26 Score=172.26 Aligned_cols=139 Identities=22% Similarity=0.348 Sum_probs=100.9
Q ss_pred hhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-c----------------ee
Q 044538 15 LQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-K----------------LR 72 (158)
Q Consensus 15 l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-~----------------~~ 72 (158)
+.+.++ +++|++. .+++++++||+|.+||+++|+||||||||||+++|++... . . ..
T Consensus 4 ~~~~~~-~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDV-GLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecc-eeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 345555 8888764 2568999999999999999999999999999999997543 1 1 11
Q ss_pred eeccccch--------hhHhh-----------H----HHHHHH-HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 73 IGRHSRHL--------EDLLT-----------M----EEAVHA-KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 73 ~~~~~~~~--------~~~~~-----------~----~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+++.++.. .+.+. . ...+.+ .++.+++..... +++.+|||||+||++||++++.
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~ 161 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGG-NLVKGISGGERRRVSIAVQLLWD 161 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhc-ccccCcCHHHHHHHHHHHHHHhC
Confidence 33332211 01000 0 012333 677788865443 5678999999999999988775
Q ss_pred -----------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS 155 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~ 155 (158)
+||+.+...+.+.+++. +.|+|++||+.
T Consensus 162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 162 PKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 69999999999888764 46999999997
No 262
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.2e-26 Score=174.41 Aligned_cols=139 Identities=23% Similarity=0.312 Sum_probs=95.7
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
.+.++ ++.|+.. ..+++++||++++|++++|+||||||||||+++|++.... +..+++
T Consensus 4 ~~~~l-~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 4 EFENV-NFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEE-EEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 44455 8888642 2489999999999999999999999999999999964321 011333
Q ss_pred cccch--hh-----Hhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 76 HSRHL--ED-----LLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 76 ~~~~~--~~-----~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.++.. .+ ... ..+.+.+.++.++ +..... +++.+||||||||++||++++.
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhh-cCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 33321 00 000 0122333333333 332222 3468999999999999988775
Q ss_pred --------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.++. .|||++|||.++
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 200 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLST 200 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 699999999998887763 699999999754
No 263
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=1.3e-26 Score=172.74 Aligned_cols=132 Identities=24% Similarity=0.315 Sum_probs=97.8
Q ss_pred eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceeee
Q 044538 19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRIG 74 (158)
Q Consensus 19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~~ 74 (158)
++ +++|++. . + |+||+|++ ++++|+||||||||||+++|++.... ...++
T Consensus 5 ~l-~~~~~~~--~-~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DI-EKRLPDF--T-L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred ee-eEecCCe--e-e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 44 8888764 2 3 99999999 99999999999999999999864210 01133
Q ss_pred ccccch--------hhHhh----------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------
Q 044538 75 RHSRHL--------EDLLT----------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 75 ~~~~~~--------~~~~~----------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
+.++.. .+.+. ..+++.++++.+++..... +++.+||||||||++||++++.
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~p~llllDE 157 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLN-RYPAQLSGGEKQRVALARALAAQPELLLLDE 157 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhh-cCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 333221 11110 1235677899999976444 5678999999999999988775
Q ss_pred ---CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++ +.|+|++|||.++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 194 (214)
T cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSE 194 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHH
Confidence 69999999999888654 5799999999754
No 264
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=1.2e-26 Score=163.35 Aligned_cols=113 Identities=34% Similarity=0.496 Sum_probs=87.0
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce-eeeccccchhhHhhHHHHHHHHHHH
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL-RIGRHSRHLEDLLTMEEAVHAKLRK 96 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (158)
.++ ++.|++. .+++++||++++||+++|+||||||||||++++++.....- .+-.... ..
T Consensus 4 ~~l-~~~~~~~--~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------------~~ 64 (144)
T cd03221 4 ENL-SKTYGGK--LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------------VK 64 (144)
T ss_pred EEE-EEEECCc--eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------------EE
Confidence 344 7788653 58999999999999999999999999999999998653221 1111000 00
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 97 FGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 97 ~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
++ .+.+||+||+||++||++++. +||+.+...+.+.+++.+.|+|++||+.++
T Consensus 65 i~--------~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~ 129 (144)
T cd03221 65 IG--------YFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYF 129 (144)
T ss_pred EE--------EEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 00 112399999999999988775 699999999999999888899999999753
No 265
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.94 E-value=1.6e-26 Score=178.14 Aligned_cols=142 Identities=23% Similarity=0.316 Sum_probs=100.6
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------ 71 (158)
.+++.+.++ ++.|+.. .+|+++||+|++|++++|+|+||||||||+++|++... ..+
T Consensus 22 ~~~l~~~~l-~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 22 KVVFDTQNL-NLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred ceEEEEeee-EEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 457777676 8888753 58999999999999999999999999999999997532 111
Q ss_pred -------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCC----CCCCCCCCCCCCChHHHHHHH
Q 044538 72 -------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGL----PGHNHLTPIANLSGGQKVRVM 120 (158)
Q Consensus 72 -------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l----~~~~~~~~~~~LSgGqkqrv~ 120 (158)
.+++.++.. .+.+. ..+.+.+.++.+++ .... .+++.+||||||||++
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgGe~qrv~ 177 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGGQQQRLC 177 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHHHHHHHH
Confidence 122222221 01110 01123344555543 2222 3467899999999999
Q ss_pred HHHHHhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 121 FTLVSMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 121 ia~~~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
||++++. +||+.+...+.+.++++ +.|||++|||+++
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~ 228 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQ 228 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHH
Confidence 9988775 69999999999988776 3699999999764
No 266
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.94 E-value=3.4e-26 Score=170.97 Aligned_cols=138 Identities=23% Similarity=0.225 Sum_probs=94.0
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------ceee
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------KLRI 73 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------~~~~ 73 (158)
.+. .+.|+.. .++++++||++++|++++|+||||||||||+++|++.... +..+
T Consensus 4 ~~~-~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 4 TNG-YFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eee-EEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 344 7788754 4589999999999999999999999999999999964210 0123
Q ss_pred eccccch-------hhHhhH-----HHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL-------EDLLTM-----EEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~~-----~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.++.. .+.+.. .+...+.++.+++.+.. ...++..|||||+||++||++++.
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 161 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI 161 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 4433321 011110 12334455555543210 123568999999999999998775
Q ss_pred --------CCCHHHHHHHHH--HH---hhcCCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAV--TL---DEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~--~l---~~~~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+ .+ ++.+.|+|++|||.++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 162 VFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 699998887766 33 3445799999999764
No 267
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.94 E-value=2e-26 Score=166.77 Aligned_cols=135 Identities=26% Similarity=0.377 Sum_probs=88.1
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR 95 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (158)
+.++ ++.|+.....+++++||++++||+++|+||||||||||+++|++..... ..+-........ .... ... .
T Consensus 3 ~~~l-~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~-~~~---~ 76 (173)
T cd03246 3 VENV-SFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ-WDPN-ELG---D 76 (173)
T ss_pred EEEE-EEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEccc-CCHH-HHH---h
Confidence 3444 8888754345899999999999999999999999999999999864321 111111111000 0000 011 1
Q ss_pred HcCCCCC---CCCCCCC--CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538 96 KFGLPGH---NHLTPIA--NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS 155 (158)
Q Consensus 96 ~~~l~~~---~~~~~~~--~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~ 155 (158)
.+++-.. .....+. -|||||+||++||++++. +||+.++..+.+.++++ +.|+|++|||.
T Consensus 77 ~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 77 HVGYLPQDDELFSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred heEEECCCCccccCcHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 1111000 0000011 199999999999998775 69999999999888664 46999999997
Q ss_pred CC
Q 044538 156 RL 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 157 ~~ 158 (173)
T cd03246 157 ET 158 (173)
T ss_pred HH
Confidence 53
No 268
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=4.5e-26 Score=167.49 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=90.5
Q ss_pred hhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---cc--e-------------eee
Q 044538 15 LQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---QK--L-------------RIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~~--~-------------~~~ 74 (158)
+.+.++ ++.|++. ..++++++||++++|++++|+||||||||||+++|++... .. + .++
T Consensus 4 l~~~~l-~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 4 LTWKNL-NYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEeee-EEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 445555 8888642 2458999999999999999999999999999999997421 11 1 122
Q ss_pred ccccch--hhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHH
Q 044538 75 RHSRHL--EDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT 140 (158)
Q Consensus 75 ~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~ 140 (158)
+.++.. ....+..+.+.... . ..+|||||+||++||++++. +||+.+...+.+.
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~-~-----------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~ 150 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA-L-----------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRF 150 (192)
T ss_pred EecccCccccCCcHHHHHHHHH-H-----------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHH
Confidence 222211 11122223222110 0 01899999999999988775 6999999999998
Q ss_pred Hhhc---CCeEEEEeecCC
Q 044538 141 LDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 141 l~~~---~~tvi~vtHd~~ 156 (158)
++++ +.|+|++|||.+
T Consensus 151 l~~~~~~~~tiiivtH~~~ 169 (192)
T cd03232 151 LKKLADSGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHcCCEEEEEEcCCh
Confidence 8765 479999999975
No 269
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.94 E-value=2.9e-26 Score=173.37 Aligned_cols=139 Identities=28% Similarity=0.317 Sum_probs=94.6
Q ss_pred hheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 17 LIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 17 ~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
+.++ ++.|+.. ..++++++||++++|++++|+||||||||||+++|++.... +..+++
T Consensus 3 i~~l-~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (238)
T cd03249 3 FKNV-SFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGL 81 (238)
T ss_pred EEEE-EEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEE
Confidence 3444 8888643 23589999999999999999999999999999999964211 011333
Q ss_pred cccchh-hHhhH------------HHHHHHHHHHc-----------CCCCCCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 76 HSRHLE-DLLTM------------EEAVHAKLRKF-----------GLPGHNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 76 ~~~~~~-~~~~~------------~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.++... ...+. .+.+.+.++.+ ++..... +++.+|||||+||++||++++.
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 82 VSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred ECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 333210 00011 11122222222 2322222 4568999999999999988775
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.+++. +.|||++|||+++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~ 200 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLST 200 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 69999999999988765 3689999999764
No 270
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-26 Score=187.46 Aligned_cols=142 Identities=26% Similarity=0.297 Sum_probs=107.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh-------------------hcceeee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR-------------------RQKLRIG 74 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~-------------------~~~~~~~ 74 (158)
.+++.++ ++.|+.++ ++|+++||+|++||.+||+|+|||||||++|++.... .-+..+|
T Consensus 351 ~I~F~dV-~f~y~~k~-~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDV-HFSYGPKR-KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEee-EEEeCCCC-ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 4667666 99998764 4899999999999999999999999999999997321 1122367
Q ss_pred ccccch--hhH-h----------hHHHHHHHHHHHcCCCCCCCCC----------CCCCCChHHHHHHHHHHHHhh----
Q 044538 75 RHSRHL--EDL-L----------TMEEAVHAKLRKFGLPGHNHLT----------PIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 75 ~~~~~~--~~~-~----------~~~~~~~~~l~~~~l~~~~~~~----------~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+.||+- ++. . ...+++.+..+++++.+...+. +...|||||||||++||+++-
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 777642 111 0 1146777888888886532221 235899999999999998774
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||.++..++++.+.+. +.|+|+|-||++.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~l 548 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDL 548 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchh
Confidence 79999999999998773 4799999999875
No 271
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=2.6e-26 Score=192.97 Aligned_cols=143 Identities=27% Similarity=0.335 Sum_probs=106.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.+.++ +|+|++...++|+|+||++++|++++|+||||||||||++++++...+ +..+
T Consensus 338 ~i~~~~v-~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 338 SLTLNNV-SFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred eEEEEEE-EEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 3666666 999976444689999999999999999999999999999999864321 0113
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCC---------CCCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHL---------TPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~---------~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.+|+. .++.. .++++.++++.+++.+.... .....||||||||++|||+++.
T Consensus 417 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 417 SVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred eEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4433321 11111 23567788888888654332 1235799999999999999875
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.+. +.|+|+|||+++.
T Consensus 497 lilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~ 536 (574)
T PRK11160 497 LLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTG 536 (574)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhH
Confidence 69999999999999876 4799999999753
No 272
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-26 Score=188.33 Aligned_cols=137 Identities=30% Similarity=0.402 Sum_probs=102.9
Q ss_pred eeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------eeecccc
Q 044538 19 EVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------RIGRHSR 78 (158)
Q Consensus 19 ~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------~~~~~~~ 78 (158)
++ ++.|+.++ ++++|+||++++|+.++|+|+||||||||+++++|.... .+ .+++.+|
T Consensus 325 ~l-~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 325 NL-SFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred ce-EEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 55 99998876 689999999999999999999999999999999974321 11 1222222
Q ss_pred ch-------hhHh------hHHHHHHHHHHHcCCCCCCCC-----C----CCCCCChHHHHHHHHHHHHhh---------
Q 044538 79 HL-------EDLL------TMEEAVHAKLRKFGLPGHNHL-----T----PIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 79 ~~-------~~~~------~~~~~~~~~l~~~~l~~~~~~-----~----~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
.. .+++ ..++++.++++..++.+.... . ....|||||+|||++|||++.
T Consensus 403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDE 482 (559)
T COG4988 403 NPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDE 482 (559)
T ss_pred CCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 21 1222 124667788888777554332 1 224699999999999999875
Q ss_pred ---CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 ---HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||.++...+.+.+.+.. .|+|++||++..
T Consensus 483 pTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~ 517 (559)
T COG4988 483 PTAHLDAETEQIILQALQELAKQKTVLVITHRLED 517 (559)
T ss_pred CccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHH
Confidence 799999999999998764 799999999753
No 273
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.94 E-value=2.1e-26 Score=193.62 Aligned_cols=142 Identities=25% Similarity=0.342 Sum_probs=103.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~ 74 (158)
+.+.++ +|+|++...++|+|+||+|++|+.++|+||||||||||+++|++...+. ..++
T Consensus 342 i~~~~v-sf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 342 IEFRNV-TFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEE-EEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 566666 9999765456899999999999999999999999999999999743211 1234
Q ss_pred ccccch-------hhHhh-------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT-------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~-------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|+. .++.. .++++.++++..++.+... + ....+||||||||++|||+++.
T Consensus 421 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ 500 (582)
T PRK11176 421 LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_pred EEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 444431 11111 1356666777666432111 1 1235799999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.+. +.|+|+|||+++.
T Consensus 501 ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~ 541 (582)
T PRK11176 501 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 69999999999999876 3799999999753
No 274
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.8e-26 Score=174.83 Aligned_cols=138 Identities=20% Similarity=0.296 Sum_probs=99.6
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce-----------------
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL----------------- 71 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~----------------- 71 (158)
+.++ ++.|+. .++++++||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 8 ~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 8 VKNL-NLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred eeeE-EEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 3444 888864 358999999999999999999999999999999987532 110
Q ss_pred --eeeccccch-------hhHhh--------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHHH
Q 044538 72 --RIGRHSRHL-------EDLLT--------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLVS 125 (158)
Q Consensus 72 --~~~~~~~~~-------~~~~~--------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~~ 125 (158)
.+++.++.. .+.+. ..+.+.++++.+++.+. ...+++.+||||||||++||+++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 164 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI 164 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence 123322221 01100 11334567888998541 12245689999999999999887
Q ss_pred hh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 126 MY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 126 l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+. +||+.+...+.+.++++ +.|||++|||.++
T Consensus 165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~ 210 (251)
T PRK14244 165 AVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQ 210 (251)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 75 69999999999888765 4799999999764
No 275
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.94 E-value=2.3e-26 Score=195.83 Aligned_cols=141 Identities=20% Similarity=0.236 Sum_probs=107.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccch----
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHL---- 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~---- 80 (158)
++++.++ ++.|+++. ++++++||++++||+++|+||||||||||+++|++.... +..+++.+|..
T Consensus 451 ~i~~~nv-~~~~~~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 451 GIKFENI-PLVTPNGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred eEEEEee-EEECCCCC-eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCC
Confidence 4666666 88886443 589999999999999999999999999999999975321 11244444431
Q ss_pred ---hhHhh-------------HHHHHHHHHHHcCCCCCCCCCC---------CCCCChHHHHHHHHHHHHhh--------
Q 044538 81 ---EDLLT-------------MEEAVHAKLRKFGLPGHNHLTP---------IANLSGGQKVRVMFTLVSMY-------- 127 (158)
Q Consensus 81 ---~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkqrv~ia~~~l~-------- 127 (158)
.+... ..+++.++++.+++.+... ++ ..+||||||||++|||+++.
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~-~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLD 607 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILE-REGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILD 607 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHh-hcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11110 1345677888888865433 22 36899999999999998875
Q ss_pred ----CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 128 ----HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++.+.|+|+||||+++
T Consensus 608 Epts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~ 641 (659)
T TIGR00954 608 ECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSL 641 (659)
T ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHH
Confidence 699999999999999888899999999764
No 276
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=2.5e-26 Score=210.91 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=108.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG 74 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~ 74 (158)
.+.+.++ ++.|+.+.+.+++|+||++++||+++|+||||||||||+++|+|...+ +..+|
T Consensus 928 ~L~I~nL-sK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNL-VKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeE-EEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEE
Confidence 4556565 888864335689999999999999999999999999999999964311 11244
Q ss_pred ccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 75 RHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 75 ~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
+.+|.. . +.+ ...+++.++++.+++.+..+ +++.+||||||||++||+|++.
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~-~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRN-EEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 443321 1 100 01245678899999987654 5679999999999999998775
Q ss_pred -----CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.++..+++.|++. +.|||++|||+++
T Consensus 1086 DEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmde 1122 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDE 1122 (2272)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 79999999999999776 4699999999864
No 277
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.94 E-value=1.8e-26 Score=192.20 Aligned_cols=142 Identities=28% Similarity=0.372 Sum_probs=104.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.+.++ +|+|++..+++++|+||++++|+.++|+||||||||||+++|++...+ +..+
T Consensus 320 ~i~~~~v-~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGL-SVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEE-EEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 3566666 999986555689999999999999999999999999999999864321 0123
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|.. .+++. .++++.++++..++.+.... ....+||||||||++|||+++.
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 4444331 11111 13556677777766432111 1346899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+.+. +.|+|+|||+++
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 518 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLA 518 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 69999999999999875 479999999974
No 278
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.94 E-value=4.3e-26 Score=175.14 Aligned_cols=143 Identities=21% Similarity=0.292 Sum_probs=102.3
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ce------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KL------------ 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~------------ 71 (158)
.+++.+.++ +++|+.. .+|+++||+|++||+++|+||||||||||+++|++.... .+
T Consensus 14 ~~~l~~~~l-~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKL-NFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEE-EEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456776666 9988753 589999999999999999999999999999999975320 11
Q ss_pred ---------eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCC---CCCCCCCCCCChHHHHHH
Q 044538 72 ---------RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPG---HNHLTPIANLSGGQKVRV 119 (158)
Q Consensus 72 ---------~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 119 (158)
.+++.++.. .+.+. ..+.+..+++.+++.. ....+++.+|||||+||+
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 122322210 01110 0134455667777632 112346689999999999
Q ss_pred HHHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 120 MFTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||++++. +||+.+...+.+.++++. .|||+||||+++
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~ 222 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQ 222 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHH
Confidence 99988775 699999999998887654 699999999764
No 279
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.94 E-value=7.5e-26 Score=166.58 Aligned_cols=129 Identities=28% Similarity=0.327 Sum_probs=91.1
Q ss_pred hhhheeeeEEcCCC----CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--hcc-ee---------------
Q 044538 15 LQLIEVISFSYPNL----QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--RQK-LR--------------- 72 (158)
Q Consensus 15 l~~~~~~~~~~~~~----~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--~~~-~~--------------- 72 (158)
+.+.++ ++.|+.. ..++++++||++++|++++|+||||||||||+++|++.. ... ..
T Consensus 4 l~~~~l-s~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 4 LSFRNL-TVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEee-EEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 445555 8888752 245899999999999999999999999999999999865 321 11
Q ss_pred -eeccccch--hhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 73 -IGRHSRHL--EDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 73 -~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
+++.++.. ....+..+.+.... +..+|||||+||++||++++. +||+.+...+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~------------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA------------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH------------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 22222211 11112222221100 012799999999999998775 6999999999
Q ss_pred HHHHhhc---CCeEEEEeecCC
Q 044538 138 AVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 138 ~~~l~~~---~~tvi~vtHd~~ 156 (158)
.+.++++ +.|+|++|||++
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCch
Confidence 9888765 469999999975
No 280
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=190.04 Aligned_cols=140 Identities=14% Similarity=0.206 Sum_probs=99.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c------------------e
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K------------------L 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~------------------~ 71 (158)
+++.+.++ ++.+ ..+|+++||+|++||+++|+||||||||||+++|++.... . .
T Consensus 249 ~~i~~~~l-~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNL-TSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCc-cccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 45555555 5542 2479999999999999999999999999999999864210 0 0
Q ss_pred eeeccccch-----h-----------hHh-------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 72 RIGRHSRHL-----E-----------DLL-------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 72 ~~~~~~~~~-----~-----------~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
.+++.++.. . ... ...+.+.++++.+++.....++++.+|||||||||+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 403 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIG 403 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHH
Confidence 133332210 0 000 01234567788888853233467899999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhh---cCCeEEEEeecCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDE---FAGGVVLVSHDSRL 157 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~~~ 157 (158)
++++. +||+.++..+.+.+++ .+.|||++|||+++
T Consensus 404 ~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~ 453 (491)
T PRK10982 404 RWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPE 453 (491)
T ss_pred HHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHH
Confidence 88764 7999999999887744 46799999999864
No 281
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=5.6e-26 Score=164.12 Aligned_cols=135 Identities=30% Similarity=0.403 Sum_probs=87.9
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHH
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLR 95 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (158)
+.++ ++.|++....+++++||++++|++++|+||||||||||+++|++..... ..+-+....... .... ... .
T Consensus 3 ~~~l-~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~-~~~---~ 76 (171)
T cd03228 3 FKNV-SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRD-LDLE-SLR---K 76 (171)
T ss_pred EEEE-EEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhh-cCHH-HHH---h
Confidence 3344 8888754235899999999999999999999999999999999864321 111111111100 0000 000 1
Q ss_pred HcCCCC---CCCCCCCC-C-CChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538 96 KFGLPG---HNHLTPIA-N-LSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 96 ~~~l~~---~~~~~~~~-~-LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 156 (158)
.+++-. ......+. . |||||+||++||++++. +||+.++..+.+.++++. .|+|++|||++
T Consensus 77 ~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 156 (171)
T cd03228 77 NIAYVPQDPFLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS 156 (171)
T ss_pred hEEEEcCCchhccchHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence 111100 00000000 1 99999999999988765 699999999999887653 69999999976
Q ss_pred C
Q 044538 157 L 157 (158)
Q Consensus 157 ~ 157 (158)
+
T Consensus 157 ~ 157 (171)
T cd03228 157 T 157 (171)
T ss_pred H
Confidence 4
No 282
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.94 E-value=9.8e-26 Score=167.25 Aligned_cols=137 Identities=18% Similarity=0.175 Sum_probs=96.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.+.++ +++|+.....+++++||+|++|++++|+||||||||||+++|++.... +..+
T Consensus 6 ~l~~~~l-~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 6 EIEVENL-SVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred eEEEEEE-EEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4566565 888875333589999999999999999999999999999999864211 1123
Q ss_pred eccccch--hhHhhHHHHH--------HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 74 GRHSRHL--EDLLTMEEAV--------HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 74 ~~~~~~~--~~~~~~~~~~--------~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
++.++.. .+ .+..+.+ .++.+.+++ . .++.+|||||+||++||++++. +||+
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~----~-~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRV----S-EGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred EEEecCCcccC-ccHHHHhcccCCCCHHHHHHHhhc----c-CCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 3333321 11 0111111 112222221 2 3568999999999999998775 6999
Q ss_pred HHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 132 QSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
.+...+.+.++++ +.|+|++|||.++
T Consensus 159 ~~~~~l~~~l~~~~~~~tiii~th~~~~ 186 (207)
T cd03369 159 ATDALIQKTIREEFTNSTILTIAHRLRT 186 (207)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCHHH
Confidence 9999999988775 4699999999764
No 283
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.94 E-value=3.3e-26 Score=165.56 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=85.9
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHHH
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLRK 96 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 96 (158)
.++ +++|+.. ++++++||++.+||+++|+||||||||||+++|++..... ..+-........ .. . ..-..
T Consensus 4 ~~l-~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~--~---~~~~~ 74 (173)
T cd03230 4 RNL-SKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EP--E---EVKRR 74 (173)
T ss_pred EEE-EEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc-ch--H---hhhcc
Confidence 344 7888643 5899999999999999999999999999999999864321 111111111000 00 0 00011
Q ss_pred cCCCCCC----CCCCC-C--CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeec
Q 044538 97 FGLPGHN----HLTPI-A--NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHD 154 (158)
Q Consensus 97 ~~l~~~~----~~~~~-~--~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd 154 (158)
+++-... ....+ . .|||||+||++||++++. +||+.+...+.+.++++ +.|+|++|||
T Consensus 75 i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 75 IGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred EEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 1110000 00000 0 199999999999998775 69999999999988765 3689999999
Q ss_pred CCC
Q 044538 155 SRL 157 (158)
Q Consensus 155 ~~~ 157 (158)
.++
T Consensus 155 ~~~ 157 (173)
T cd03230 155 LEE 157 (173)
T ss_pred HHH
Confidence 753
No 284
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.93 E-value=3.2e-26 Score=196.11 Aligned_cols=142 Identities=27% Similarity=0.353 Sum_probs=103.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+++.++ +|+|++..+++|+|+||+|++||.++|+||||||||||+++|++...+ +..++
T Consensus 464 I~~~~v-sf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 464 IEFRNV-SFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEEEEE-EEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 566666 999976555689999999999999999999999999999999864321 11244
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC----------CCCCCCCChHHHHHHHHHHHHhh----
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH----------LTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
+.+|.. .+++. .++++.++++..++.+... ......||||||||++|||+++.
T Consensus 543 ~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i 622 (694)
T TIGR03375 543 YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI 622 (694)
T ss_pred EECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 444431 11111 1355666666665532111 01235799999999999999875
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.+. +.|+|+|||+++.
T Consensus 623 liLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~ 662 (694)
T TIGR03375 623 LLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSL 662 (694)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 69999999999999876 4799999999753
No 285
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=2.8e-26 Score=169.62 Aligned_cols=142 Identities=23% Similarity=0.325 Sum_probs=99.5
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ce
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KL 71 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~ 71 (158)
+|+++.++ +..|+. ..+|++|||++++||+++|+|+||+|||||++.|++..+. +.
T Consensus 2 ~mL~v~~l-~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENL-SAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeE-eecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 46777776 888876 3589999999999999999999999999999999964321 12
Q ss_pred eeecccc--chhhHhhHHHH-----------------HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 72 RIGRHSR--HLEDLLTMEEA-----------------VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 72 ~~~~~~~--~~~~~~~~~~~-----------------~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
.+++.++ ..++.++++++ .+++.+.|-.-....+++..+|||||||.++||||++.
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 2344433 22333333322 33344454321222335678999999999999999887
Q ss_pred -------CCCHHHHHHHHHHHhhcC----CeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEFA----GGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~~----~tvi~vtHd~~~ 157 (158)
+|-|.-..++.+.+++.. .||++|.++..+
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~ 199 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF 199 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH
Confidence 355777777777776543 499999998653
No 286
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=8.3e-26 Score=173.32 Aligned_cols=138 Identities=20% Similarity=0.210 Sum_probs=100.0
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce------------------
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL------------------ 71 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~------------------ 71 (158)
.+..++.|+. ..+++++||++++|++++|+||||||||||+++|++... ..+
T Consensus 11 ~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 11 CKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 3444888864 358999999999999999999999999999999986531 100
Q ss_pred -eeeccccch-------hhHhh-----------HHHHHHHHHHHcCCCCCC---CCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 72 -RIGRHSRHL-------EDLLT-----------MEEAVHAKLRKFGLPGHN---HLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 72 -~~~~~~~~~-------~~~~~-----------~~~~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
.+++.++.. .+.+. ..+.+.++++.+++.... ...++.+|||||+||++||++++.
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 122222210 11111 123566788888885321 124568999999999999998875
Q ss_pred ----------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~ 157 (158)
+||+.++..+.+.++++. .|+|++|||+++
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~ 210 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQ 210 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 699999999999988763 699999999764
No 287
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.93 E-value=4.3e-26 Score=191.32 Aligned_cols=142 Identities=22% Similarity=0.301 Sum_probs=102.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~ 74 (158)
+.+.++ +++|+....++|+|+||++++|++++|+|+||||||||+++|++...+. ..++
T Consensus 331 i~~~~v-~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 331 VEFRNV-TFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEE-EEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 555565 9999764456899999999999999999999999999999998753211 1134
Q ss_pred ccccch-------hhHhh-------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT-------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~-------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|+. .+++. .++++.++++.+++.+... + .....||||||||++|||+++.
T Consensus 410 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~ 489 (571)
T TIGR02203 410 LVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAP 489 (571)
T ss_pred EEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 444331 11111 1355666777766532111 1 1224799999999999998875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||..+...+.+.+.+. +.|+|+|||+.+.
T Consensus 490 illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~ 530 (571)
T TIGR02203 490 ILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST 530 (571)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHH
Confidence 69999999999999876 3799999999753
No 288
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.1e-26 Score=189.74 Aligned_cols=142 Identities=28% Similarity=0.422 Sum_probs=96.9
Q ss_pred hhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 14 MLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
.+++.++ +|+|+..+ .++|+|+||+|+|||++||+||||+||||+.+++.....+ +..
T Consensus 465 ~IeF~~V-sFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 465 VIEFEDV-SFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred eEEEEEe-eeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 4667776 99998764 4789999999999999999999999999999988621110 112
Q ss_pred eeccccch-------hhHh------hHHHHHHH---------HHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 73 IGRHSRHL-------EDLL------TMEEAVHA---------KLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 73 ~~~~~~~~-------~~~~------~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+|.+.|.+ .++. ..+++++. .+..+ |.+.... .+..+||||||||+|||||++.
T Consensus 544 Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG-EkG~qLSGGQKQRIAIARALlr~ 622 (716)
T KOG0058|consen 544 IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVG-EKGSQLSGGQKQRIAIARALLRN 622 (716)
T ss_pred eeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CccccccchHHHHHHHHHHHhcC
Confidence 33332221 0100 01223333 33333 1221111 2346999999999999999876
Q ss_pred -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
.||.++...+.+.+.+. +.|||+|.|.+..
T Consensus 623 P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLST 665 (716)
T KOG0058|consen 623 PRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLST 665 (716)
T ss_pred CCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhH
Confidence 59999999999988754 3799999998753
No 289
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.2e-25 Score=169.76 Aligned_cols=138 Identities=25% Similarity=0.280 Sum_probs=93.3
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-----------------eeeecc
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-----------------LRIGRH 76 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-----------------~~~~~~ 76 (158)
+.++ +++|+.. ..+++++||+|++|++++|+||||||||||+++|++.... . ..+++.
T Consensus 3 ~~~l-~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 3 FENV-TFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEE-EEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 3344 8888643 3489999999999999999999999999999999964321 0 013333
Q ss_pred ccch-------hhHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh-----
Q 044538 77 SRHL-------EDLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 77 ~~~~-------~~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
++.. .+.+. ..+.+...++.++ +..... +++.+||||||||++||++++.
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVG-ERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhh-cCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 2221 00000 0111222222222 222222 3467999999999999988775
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.+. +.|||++||+.++
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 198 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLST 198 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 69999999998888665 4699999999764
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.93 E-value=4.6e-26 Score=188.81 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=94.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch---------
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL--------- 80 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~--------- 80 (158)
.+++++||+|.+||+++|+||||||||||+++|++.... +..+++.++..
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 379999999999999999999999999999999864210 01123333221
Q ss_pred --hhHh------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 81 --EDLL------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 81 --~~~~------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
.+.+ ...+.+.++++.+++.....++++.+|||||||||+||++++. +
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 0110 0113466788999995323346789999999999999988764 7
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||+.++..+.+.+.++ +.|||+||||+++
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~ 458 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDLPE 458 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 9999999998887543 6799999999864
No 291
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.93 E-value=8.6e-26 Score=173.52 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=92.6
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---ee----eecccc--------chhhHh---------h
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LR----IGRHSR--------HLEDLL---------T 85 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~----~~~~~~--------~~~~~~---------~ 85 (158)
.++++++||+|++|++++|+||||||||||+++|++..... +. .++..+ ...+.+ .
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~ 116 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFK 116 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999763211 10 111000 011111 0
Q ss_pred ---HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCe
Q 044538 86 ---MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGG 147 (158)
Q Consensus 86 ---~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~t 147 (158)
..+.+..+++.+++.+... +++.+|||||+||++||++++. +||+.+...+.+.+.++ +.|
T Consensus 117 ~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~t 195 (264)
T PRK13546 117 RKEIKAMTPKIIEFSELGEFIY-QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKT 195 (264)
T ss_pred HHHHHHHHHHHHHHcCCchhhc-CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 1123445677888876544 5778999999999999988775 69999998888887654 579
Q ss_pred EEEEeecCCC
Q 044538 148 VVLVSHDSRL 157 (158)
Q Consensus 148 vi~vtHd~~~ 157 (158)
+|++|||.++
T Consensus 196 iIiisH~~~~ 205 (264)
T PRK13546 196 IFFVSHNLGQ 205 (264)
T ss_pred EEEEcCCHHH
Confidence 9999999754
No 292
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.93 E-value=8e-26 Score=190.39 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=98.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------eeeec
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------LRIGR 75 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------~~~~~ 75 (158)
+.+.++ ++.|..+ +++|+|+||++++|+.++|+||||||||||+++|++..... ..+++
T Consensus 350 i~~~~v-sf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 350 IEAEDL-EILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred EEEEee-EEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEE
Confidence 455555 7655443 46899999999999999999999999999999998654211 12344
Q ss_pred cccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh----
Q 044538 76 HSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 76 ~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
.+|.. .++.. .++++.++++..++.+ ... .....||||||||++||||++.
T Consensus 428 v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg-e~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred ecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc-cCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 44431 11111 1345556666555432 111 1235799999999999999875
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||.++...+.+.+.+. +.|+|+|||+++
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~ 545 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence 69999999999999876 379999999875
No 293
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=8.8e-26 Score=159.56 Aligned_cols=133 Identities=23% Similarity=0.331 Sum_probs=99.8
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------------ceeeec
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------------KLRIGR 75 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------------~~~~~~ 75 (158)
++.|+.. .+|-||+|+.+.||.+.++||||+|||||+|.+.....+ +..+|.
T Consensus 9 n~~yg~~--q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgm 86 (242)
T COG4161 9 NCFYGAH--QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGM 86 (242)
T ss_pred ccccccc--hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhh
Confidence 7788765 479999999999999999999999999999998732210 011232
Q ss_pred cccc--hhhHhh-------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 76 HSRH--LEDLLT-------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 76 ~~~~--~~~~~~-------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
.++. +++.++ ...++.++++++.+.+..++.| -.|||||+|||+||||++.
T Consensus 87 vfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-lhlsggqqqrvaiaralmmkpqvllf 165 (242)
T COG4161 87 VFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-LHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred hhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-eecccchhhhHHHHHHHhcCCcEEee
Confidence 2221 112111 1245678899999998877655 6799999999999999886
Q ss_pred -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
.|||+-..++.++++++ +.|-++|||..++
T Consensus 166 deptaaldpeitaqvv~iikel~~tgitqvivthev~v 203 (242)
T COG4161 166 DEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203 (242)
T ss_pred cCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH
Confidence 58999888888888776 4688999998764
No 294
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.93 E-value=6.2e-26 Score=167.72 Aligned_cols=126 Identities=22% Similarity=0.245 Sum_probs=88.1
Q ss_pred hheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hcceee--------------------
Q 044538 17 LIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQKLRI-------------------- 73 (158)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~~~~~-------------------- 73 (158)
+.++ ++.|++ ..+++++||++.+||+++|+||||||||||+++|++.. .....+
T Consensus 3 ~~~l-~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDL-HVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEE-EEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 3444 888874 35899999999999999999999999999999999862 111111
Q ss_pred eccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538 74 GRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141 (158)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l 141 (158)
++.++... ....-.+.+.+ +....+|||||+||++||++++. +||+.+...+.+.+
T Consensus 80 ~~v~q~~~--~~~~~~~~~~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L 147 (200)
T cd03217 80 FLAFQYPP--EIPGVKNADFL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVI 147 (200)
T ss_pred EEeecChh--hccCccHHHHH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 11111100 00000111111 12235899999999999998775 69999999999888
Q ss_pred hhc---CCeEEEEeecCCC
Q 044538 142 DEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 142 ~~~---~~tvi~vtHd~~~ 157 (158)
+++ +.|+|++|||+++
T Consensus 148 ~~~~~~~~tiii~sh~~~~ 166 (200)
T cd03217 148 NKLREEGKSVLIITHYQRL 166 (200)
T ss_pred HHHHHCCCEEEEEecCHHH
Confidence 765 4799999999753
No 295
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.93 E-value=5.1e-26 Score=208.83 Aligned_cols=142 Identities=20% Similarity=0.308 Sum_probs=108.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG 74 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~ 74 (158)
++.+.++ ++.|++..+.+++|+||+|++||++||+||||||||||+++|+|.... +..+|
T Consensus 1937 ~L~v~nL-sK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1937 ILRLNEL-TKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred eEEEEEE-EEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 5666665 888875434689999999999999999999999999999999964211 11245
Q ss_pred ccccch--h------hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 75 RHSRHL--E------DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 75 ~~~~~~--~------~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
+.+|.. . +.+ ...+.+.++++.+++.+..+ +++.+||||||||++||+|++.
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-k~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-RLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 544431 1 111 01234567889999976554 6779999999999999998875
Q ss_pred -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+++.+++.+++. +.|||++||++++
T Consensus 2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee 2132 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132 (2272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 79999999999988764 4699999999864
No 296
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=7.7e-26 Score=184.27 Aligned_cols=142 Identities=22% Similarity=0.266 Sum_probs=106.0
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---------------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------- 70 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------- 70 (158)
.+++++.++ +++|+.. .+|+++||++.+||+++|+|.||||||||+|+|+|...+.
T Consensus 6 ~~ll~~~~i-~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 6 PPLLELRGI-SKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred cceeeeecc-eEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence 456777776 9999875 5899999999999999999999999999999999632210
Q ss_pred eeeeccccc------------------------hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 71 LRIGRHSRH------------------------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 71 ~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
..+....|. +.+...+.+++.++++.+++... .+.++.+||.||||.|+||+|+.
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence 011111111 11222345678889999998633 44688999999999999999876
Q ss_pred h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
. .|+......+++.++++ +.+||+|||.+++
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E 207 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDE 207 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 5 47777777777766554 5799999999865
No 297
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.2e-26 Score=164.84 Aligned_cols=136 Identities=32% Similarity=0.382 Sum_probs=86.5
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhh-HHHHHHHHHH
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLT-MEEAVHAKLR 95 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~ 95 (158)
.++ ++.|+. .++++++||++++|++++|+||||||||||+++|++..... ..+-........ .. ........+.
T Consensus 4 ~~l-~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~~~i~ 79 (178)
T cd03229 4 KNV-SKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTD-LEDELPPLRRRIG 79 (178)
T ss_pred EEE-EEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-cchhHHHHhhcEE
Confidence 344 788864 35899999999999999999999999999999999764321 111111111100 00 0000000000
Q ss_pred ----HcCCCCC-CCCCCCC-CCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEee
Q 044538 96 ----KFGLPGH-NHLTPIA-NLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSH 153 (158)
Q Consensus 96 ----~~~l~~~-~~~~~~~-~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtH 153 (158)
...+... ....... .|||||+||++||++++. +||+.++..+.+.++++ +.|+|++||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 0000000 0000011 199999999999988775 69999999999888664 479999999
Q ss_pred cCCC
Q 044538 154 DSRL 157 (158)
Q Consensus 154 d~~~ 157 (158)
|.++
T Consensus 160 ~~~~ 163 (178)
T cd03229 160 DLDE 163 (178)
T ss_pred CHHH
Confidence 9754
No 298
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.93 E-value=1.1e-25 Score=171.48 Aligned_cols=140 Identities=21% Similarity=0.309 Sum_probs=99.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------cce---------------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------QKL--------------- 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------~~~--------------- 71 (158)
+.+.++ ++.|+. .++++++||+|.+|++++|+||||||||||+++|++... ..+
T Consensus 4 l~~~~v-~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENL-NTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeE-EEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 344444 888864 358999999999999999999999999999999986421 100
Q ss_pred ----eeeccccch-------hhHhh-------------HHHHHHHHHHHcCCCCC---CCCCCCCCCChHHHHHHHHHHH
Q 044538 72 ----RIGRHSRHL-------EDLLT-------------MEEAVHAKLRKFGLPGH---NHLTPIANLSGGQKVRVMFTLV 124 (158)
Q Consensus 72 ----~~~~~~~~~-------~~~~~-------------~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~ia~~ 124 (158)
.+++.++.. .+.+. ..+.+.++++.+++... ..++++.+|||||+||++||++
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara 160 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 123322210 00000 11335566778887421 1235678999999999999998
Q ss_pred Hhh------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 125 SMY------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 125 ~l~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++. +||+.+...+.+.+++. +.|||++|||+++
T Consensus 161 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 207 (250)
T PRK14266 161 IAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQ 207 (250)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence 775 69999999999988765 3699999999754
No 299
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.93 E-value=9.2e-26 Score=187.40 Aligned_cols=125 Identities=14% Similarity=0.175 Sum_probs=94.9
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch-----h----
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL-----E---- 81 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~-----~---- 81 (158)
+|+++||+|++|++++|+||||||||||+++|++.... +..+++.++.. .
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 58999999999999999999999999999999864210 01244444321 0
Q ss_pred --hHh---------------hHHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 82 --DLL---------------TMEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 82 --~~~---------------~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
+.+ ...+.+.++++.+++. ... ++++.+||||||||++||++++. +||+
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~ 436 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA-EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCc-cCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcCh
Confidence 000 0113456788999996 444 46779999999999999988775 6999
Q ss_pred HHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 132 QSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
.++..+.+.++++ +.|||+||||+++
T Consensus 437 ~~~~~l~~~l~~l~~~g~tiIivsHd~~~ 465 (510)
T PRK15439 437 SARNDIYQLIRSIAAQNVAVLFISSDLEE 465 (510)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEECCCHHH
Confidence 9999999888764 5799999999864
No 300
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.93 E-value=1e-25 Score=171.60 Aligned_cols=125 Identities=27% Similarity=0.328 Sum_probs=94.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------------eeeeccccch--------hhHh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------LRIGRHSRHL--------EDLL 84 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------~~~~~~~~~~--------~~~~ 84 (158)
+|+++||++++|++++|+||||||||||+++|++..... ..+++.++.. .+.+
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 689999999999999999999999999999998643110 0133333221 0100
Q ss_pred -----------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHH
Q 044538 85 -----------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSI 134 (158)
Q Consensus 85 -----------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~ 134 (158)
...+++.++++.+++....+ +++.+||||||||++||++++. +||+.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~ 169 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLG-RSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQ 169 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhc-CCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHH
Confidence 01235678899999976544 5679999999999999999872 5899999
Q ss_pred HHHHHHHhhc---CCeEEEEeecCCC
Q 044538 135 VAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 135 ~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
..+.+.++++ +.|||++|||+++
T Consensus 170 ~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 170 AALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 9999888765 4699999999763
No 301
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=1.9e-25 Score=188.26 Aligned_cols=140 Identities=24% Similarity=0.294 Sum_probs=102.2
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~ 74 (158)
+++.++ +|+|+.. .++|+|+||++++||.++|+|+||||||||+++|++...+. ..++
T Consensus 341 i~~~~v-~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 341 IDIDNV-SFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred EEEEEE-EEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 555565 9999753 45899999999999999999999999999999998643211 1234
Q ss_pred ccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh-----
Q 044538 75 RHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
+.+|+. .++.. .++++.++++.+|+.+... + .....||||||||++||||++.
T Consensus 419 ~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 419 MVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 444431 11111 1356667777776542111 0 1235799999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+++...+.+.+++. ++|+|+|||+++
T Consensus 499 llDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~ 536 (592)
T PRK10790 499 ILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLS 536 (592)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 69999999999999876 479999999875
No 302
>PRK13409 putative ATPase RIL; Provisional
Probab=99.93 E-value=1.1e-25 Score=189.40 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=101.4
Q ss_pred heeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----------------------
Q 044538 18 IEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----------------------- 71 (158)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----------------------- 71 (158)
.+.++++|+.. ..+|++++ .+++|++++|+||||||||||+++|++...+. +
T Consensus 76 ~~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 76 EEEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred ccCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 33358888753 35799999 99999999999999999999999999643211 0
Q ss_pred -------eeeccccchh-----------hHh---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 72 -------RIGRHSRHLE-----------DLL---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 72 -------~~~~~~~~~~-----------~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
.+++..++.. +.+ ...+++.++++.+++....+ +++.+|||||||||+||++++.
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~-~~~~~LSgGe~qrv~ia~al~~~p~ 232 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILD-RDISELSGGELQRVAIAAALLRDAD 232 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 0111111110 001 11245677889999976544 6789999999999999988764
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+..+..+.+.++++ +.|||+||||+++
T Consensus 233 lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~ 273 (590)
T PRK13409 233 FYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAV 273 (590)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 69999999999888776 7899999999864
No 303
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.93 E-value=1.1e-25 Score=172.06 Aligned_cols=133 Identities=22% Similarity=0.293 Sum_probs=97.1
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce---------------------------
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL--------------------------- 71 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~--------------------------- 71 (158)
+++|+... .+++++|+ +.+|++++|+||||||||||+++|++.... .+
T Consensus 7 ~~~y~~~~-~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~ 84 (255)
T cd03236 7 VHRYGPNS-FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84 (255)
T ss_pred ceeecCcc-hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhh
Confidence 88886432 58999995 999999999999999999999999964321 11
Q ss_pred ---eeeccccchh-------hH-------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 72 ---RIGRHSRHLE-------DL-------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 72 ---~~~~~~~~~~-------~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
.+++.+++.. .. ....+.+.++++.+++..... +++.+||||||||++||++++.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~-~~~~~LS~G~~qrv~laral~~~p~illl 163 (255)
T cd03236 85 GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD-RNIDQLSGGELQRVAIAAALARDADFYFF 163 (255)
T ss_pred cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0111111100 00 011345678899999976544 5678999999999999988775
Q ss_pred -----CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 -----HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|||++|||+++
T Consensus 164 DEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~ 201 (255)
T cd03236 164 DEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAV 201 (255)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence 69999988888777654 5799999999754
No 304
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.3e-25 Score=160.36 Aligned_cols=143 Identities=20% Similarity=0.216 Sum_probs=103.8
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------------- 70 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------------- 70 (158)
.+|.+.+.++ ++.|+... -.+||||++.|||+++|+|+||||||||+++|++...+.
T Consensus 3 ~~PLL~V~~l-sk~Yg~~~--gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 3 DKPLLSVSGL-SKLYGPGK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred CCcceeehhh-hhhhCCCc--CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 3566666666 88887653 589999999999999999999999999999998532110
Q ss_pred ---------eeeeccccchhhH-----------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHH
Q 044538 71 ---------LRIGRHSRHLEDL-----------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVR 118 (158)
Q Consensus 71 ---------~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 118 (158)
-..|+.-|+..+- -...+.+.++++.+.++....+..+.++||||+||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 0012211111110 11235677899999997654444558999999999
Q ss_pred HHHHHHHhh------------CCCHHHHHHHHHHHh----hcCCeEEEEeecCC
Q 044538 119 VMFTLVSMY------------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSR 156 (158)
Q Consensus 119 v~ia~~~l~------------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~ 156 (158)
+.||+-+.. +||...+..+++.++ +++.++++||||+.
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~ 213 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence 999987664 689888888887775 45679999999975
No 305
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.93 E-value=1.2e-25 Score=186.22 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=94.9
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccch----------
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRHL---------- 80 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~~---------- 80 (158)
+++++||+|.+||+++|+||||||||||+++|++.... +..+++.+|..
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 69999999999999999999999999999999864210 01244444331
Q ss_pred -hhHh------------------hHHHHHHHHHHHcCCC-CCCCCCCCCCCChHHHHHHHHHHHHhh------------C
Q 044538 81 -EDLL------------------TMEEAVHAKLRKFGLP-GHNHLTPIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 81 -~~~~------------------~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
.+.+ ...+++.++++.+++. ... ++++.+|||||||||+||++++. +
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM-EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc-cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 0000 0123466788999995 444 46789999999999999998764 7
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||+.++..+.+.++++ +.|||++|||+++
T Consensus 426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~ 457 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEMPE 457 (501)
T ss_pred CCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 9999999999888765 4699999999764
No 306
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.93 E-value=1.4e-25 Score=192.48 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=100.3
Q ss_pred hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
.+++.++ +|+|++. .+++|+|+||++++||.++|+||||||||||+++|++.... +..
T Consensus 478 ~I~~~nV-sf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 478 LIEFQDV-SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred eEEEEEE-EEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 3566666 9999754 24689999999999999999999999999999999864321 112
Q ss_pred eeccccch-------hhHhh------HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh--
Q 044538 73 IGRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 73 ~~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
+++.+|.. .++.. .++++.++++..++.+... + ....+||||||||++|||+++.
T Consensus 557 i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 557 VALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred ceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 34444331 11111 1356666777766543211 1 1235799999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
+||+++...+.+.....+.|+|+|||+++
T Consensus 637 ~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~ 675 (711)
T TIGR00958 637 RVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLS 675 (711)
T ss_pred CEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHH
Confidence 69999988888833333579999999975
No 307
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=4.4e-25 Score=163.42 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=89.8
Q ss_pred hhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-c--ee---------------
Q 044538 16 QLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-K--LR--------------- 72 (158)
Q Consensus 16 ~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-~--~~--------------- 72 (158)
.+.++ +|.|+.+ ...+|+++||++++|++++|+||||||||||+++|++... . . +.
T Consensus 5 ~~~~~-~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 83 (202)
T cd03233 5 SWRNI-SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPG 83 (202)
T ss_pred EEEcc-EEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcc
Confidence 34455 8999753 4568999999999999999999999999999999998643 1 1 11
Q ss_pred -eeccccc--hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 73 -IGRHSRH--LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 73 -~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
+++.++. ....++..+.+..... .. .++++.+|||||+||++||++++. +||+.++..+
T Consensus 84 ~i~~~~q~~~~~~~~tv~~~l~~~~~-~~-----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 157 (202)
T cd03233 84 EIIYVSEEDVHFPTLTVRETLDFALR-CK-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157 (202)
T ss_pred eEEEEecccccCCCCcHHHHHhhhhh-hc-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH
Confidence 1222221 1111233333322111 11 234668999999999999998775 6999999999
Q ss_pred HHHHhhc----CCeEEEEeec
Q 044538 138 AVTLDEF----AGGVVLVSHD 154 (158)
Q Consensus 138 ~~~l~~~----~~tvi~vtHd 154 (158)
.+.++++ +.|+|+++|+
T Consensus 158 ~~~l~~~~~~~~~t~ii~~~h 178 (202)
T cd03233 158 LKCIRTMADVLKTTTFVSLYQ 178 (202)
T ss_pred HHHHHHHHHhCCCEEEEEEcC
Confidence 9888764 3466665543
No 308
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.93 E-value=4.2e-25 Score=169.03 Aligned_cols=143 Identities=18% Similarity=0.155 Sum_probs=98.1
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
+.+.+.++ ++.|+.....+++++||+|++|++++|+|+||||||||+++|++.... +..
T Consensus 18 ~~i~~~~l-~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDL-CVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEE-EEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 35666666 888875434589999999999999999999999999999999964211 011
Q ss_pred eeccccch--hh-----HhhH-----HHHHHHHHH---------Hc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 73 IGRHSRHL--ED-----LLTM-----EEAVHAKLR---------KF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 73 ~~~~~~~~--~~-----~~~~-----~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
+++.++.. .+ .+.. .+.+.++++ .+ +++.... .++.+|||||+||++||++++.
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-EGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEec-cCCCcCCHHHHHHHHHHHHHhcCC
Confidence 33333221 00 0000 112222223 33 3333222 3457999999999999998775
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|++||+++.
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~ 217 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVST 217 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHH
Confidence 69999999998888764 4799999999864
No 309
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.93 E-value=3.4e-25 Score=185.18 Aligned_cols=141 Identities=23% Similarity=0.333 Sum_probs=99.2
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~ 73 (158)
.+.+.++ +++|+....++++|+||++++|+.++|+||||||||||++++++...+. ..+
T Consensus 316 ~i~~~~v-~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENV-TIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEE-EEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 3566666 9999765456899999999999999999999999999999998643210 123
Q ss_pred eccccch-------hhHhh------HHHHHHHHHH---------Hc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLR---------KF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~---------~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
++.+|.. .++.. .++++.++++ .+ |++.... ....+||||||||++|||+++.
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~-~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccC-CCcCCCCHHHHHHHHHHHHHhcCC
Confidence 3333321 11111 1123333333 33 3333222 3457899999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||+++...+.+.+.+. +.|+|++||+.+
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~ 515 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH
Confidence 69999999999988775 479999999975
No 310
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.93 E-value=2e-25 Score=188.02 Aligned_cols=139 Identities=27% Similarity=0.350 Sum_probs=99.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~ 74 (158)
+.+.++ +|+|+.. +++|+|+||++++|+.++|+|+||||||||++++++...+. ..++
T Consensus 335 I~~~~v-sf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 412 (588)
T PRK13657 335 VEFDDV-SFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIA 412 (588)
T ss_pred EEEEEE-EEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 555565 9999753 35899999999999999999999999999999999653211 1234
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|.. .+++. .++++..+++.+++.+ ... .....||||||||++|||+++.
T Consensus 413 ~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~-~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVG-ERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 443321 11111 1344555666555432 111 1235799999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
+||+.+...+.+.+.+. +.|+|+|||+.+
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~ 531 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHH
Confidence 69999999999988775 479999999964
No 311
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.93 E-value=2.4e-25 Score=191.08 Aligned_cols=140 Identities=23% Similarity=0.281 Sum_probs=101.6
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+.+.++ +|+|+.. +++|+|+||+|++|+.++|+||||||||||+++|++...+ +..++
T Consensus 474 I~~~~v-sf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 551 (708)
T TIGR01193 474 IVINDV-SYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFIN 551 (708)
T ss_pred EEEEEE-EEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheE
Confidence 556565 9999743 4689999999999999999999999999999999864321 11244
Q ss_pred ccccch-------hhHhh-------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 75 RHSRHL-------EDLLT-------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~-------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
+.+|+. .++.. .++++.++++..++.+ ... .....||||||||++||||++.
T Consensus 552 ~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~-e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 552 YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS-EEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec-CCCCCCCHHHHHHHHHHHHHhhCC
Confidence 444431 11111 1345566666665532 111 1346799999999999999875
Q ss_pred ----------CCCHHHHHHHHHHHhhc-CCeEEEEeecCCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF-AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~-~~tvi~vtHd~~~ 157 (158)
+||+++...+.+.+.+. +.|+|+|||+++.
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~ 671 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSV 671 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHH
Confidence 69999999999998875 4799999999753
No 312
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.92 E-value=5.2e-25 Score=184.98 Aligned_cols=142 Identities=24% Similarity=0.342 Sum_probs=101.5
Q ss_pred hhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----------------ee
Q 044538 15 LQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----------------RI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----------------~~ 73 (158)
+.+.++ ++.|+... +++|+|+||++++||.++|+||||||||||+++|++...+. + .+
T Consensus 338 i~~~~v-~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 338 IEFEQV-NFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEE-EEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 556565 99997532 46899999999999999999999999999999999753211 1 23
Q ss_pred eccccch-------hhHhh------HHHHHHHHHHHcCCCCCC-------C---CCCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------EDLLT------MEEAVHAKLRKFGLPGHN-------H---LTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~~~-------~---~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
++.+|+. .+++. .++++.++++.+++.+.. + ......||||||||++|||+++.
T Consensus 417 ~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ 496 (576)
T TIGR02204 417 ALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAP 496 (576)
T ss_pred eEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCC
Confidence 4444331 11111 134566666666553211 0 11235799999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|+|||+.+.
T Consensus 497 ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~ 537 (576)
T TIGR02204 497 ILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLAT 537 (576)
T ss_pred eEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHH
Confidence 69999999999888876 4799999998753
No 313
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.92 E-value=8e-25 Score=183.87 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=100.2
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~ 74 (158)
+.+.++ +++|++...++|+++||++++|++++|+||||||||||+++|++...+. ..++
T Consensus 314 I~~~~v-~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 314 LDVNIR-QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEE-EEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 455555 9999765456899999999999999999999999999999998643210 1123
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcCCCC-----------CCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLPG-----------HNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~~-----------~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|.. .++.. .++++.++++..++.+ ... .....||||||||++|||+++.
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVG-ERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceec-CCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 333221 11111 1244555566555432 111 2346799999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+++...+.+.+++. +.|+|+|||+++.
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~ 512 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSA 512 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhH
Confidence 69999999999999775 4799999999753
No 314
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.92 E-value=1.7e-25 Score=162.39 Aligned_cols=111 Identities=23% Similarity=0.219 Sum_probs=80.8
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHHHcCCC
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLRKFGLP 100 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 100 (158)
++.|++. .++++ +|++++||+++|+||||||||||+++|++..... ..+-..... ++..
T Consensus 7 ~~~~~~~--~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------------i~~~ 66 (177)
T cd03222 7 VKRYGVF--FLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------------PVYK 66 (177)
T ss_pred EEEECCE--EEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------------EEEE
Confidence 7788653 46777 4999999999999999999999999999865321 111111000 1110
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 101 GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 101 ~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
. ... .||||||||++||++++. +||+.++..+.+.++++ +.|+|++|||+++
T Consensus 67 ~---q~~--~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 67 P---QYI--DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred c---ccC--CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 0 001 299999999999988775 69999999888888664 3799999999754
No 315
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.92 E-value=5.4e-25 Score=184.40 Aligned_cols=141 Identities=20% Similarity=0.244 Sum_probs=100.9
Q ss_pred hhhheeeeEEcCCC---CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------
Q 044538 15 LQLIEVISFSYPNL---QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----------------- 71 (158)
Q Consensus 15 l~~~~~~~~~~~~~---~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----------------- 71 (158)
+++.++ +++|++. ..++|+|+||++++|++++|+||||||||||+++|++...+ .+
T Consensus 338 i~~~~v-~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 338 IELKDV-HMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEE-EEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 555565 9999753 23589999999999999999999999999999999864321 11
Q ss_pred eeeccccch--h-h----Hh---hHHHHHHHHHHHcCCCCCCCCC-----CCCCCChHHHHHHHHHHHHhh---------
Q 044538 72 RIGRHSRHL--E-D----LL---TMEEAVHAKLRKFGLPGHNHLT-----PIANLSGGQKVRVMFTLVSMY--------- 127 (158)
Q Consensus 72 ~~~~~~~~~--~-~----~~---~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGqkqrv~ia~~~l~--------- 127 (158)
.+++.+|+. . . .. ..++++.++++.+++.+..... ....||||||||++|||+++.
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred hCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 122333321 0 0 00 1235677889999887543221 125799999999999999875
Q ss_pred ---CCCHHHHHHHHHHH-h---hcCCeEEEEeecCC
Q 044538 128 ---HLDTQSIVAVAVTL-D---EFAGGVVLVSHDSR 156 (158)
Q Consensus 128 ---~lD~~~~~~l~~~l-~---~~~~tvi~vtHd~~ 156 (158)
+||+++...+.+.+ + ..+.|+|+|||+++
T Consensus 497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~ 532 (555)
T TIGR01194 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ 532 (555)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH
Confidence 69999999887654 2 23689999999974
No 316
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=4.9e-25 Score=174.14 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=103.7
Q ss_pred hhhhhheeeeEEcCCC---------CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------
Q 044538 13 PMLQLIEVISFSYPNL---------QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~---------~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------------- 70 (158)
+.++..++ .++|+-. ...+++++||++.+|+.+||+|+||||||||-.++.......
T Consensus 275 ~ll~~~~v-~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDL-RVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecce-EEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCcccccc
Confidence 35555555 7777421 124789999999999999999999999999987776321110
Q ss_pred ---------eeeeccccchh----hHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHH
Q 044538 71 ---------LRIGRHSRHLE----DLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKV 117 (158)
Q Consensus 71 ---------~~~~~~~~~~~----~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 117 (158)
..+..++|+.+ +.+ ..++++.++++.+|+++....++++++||||||
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQ 433 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQ 433 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhh
Confidence 01111222211 111 123678889999999987777888999999999
Q ss_pred HHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 118 RVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 118 rv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
|++||||+.. .||...+.+++++|+++ +.+-+|||||+..
T Consensus 434 RIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V 489 (534)
T COG4172 434 RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV 489 (534)
T ss_pred HHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH
Confidence 9999999765 58888888888887654 4689999999753
No 317
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.92 E-value=8.2e-25 Score=183.03 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=101.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.+.++ +|+|+.. .++|+|+||++++|+.++|+||||||||||+++|++...+ +..+
T Consensus 322 ~i~~~~v-~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 322 TLELRNV-TFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred eEEEEEE-EEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhhe
Confidence 3556665 9999753 3589999999999999999999999999999999964321 0123
Q ss_pred eccccch--hh-Hh------hHHHHHHHHHHHcCCCCCCCC--C--CCCCCChHHHHHHHHHHHHhh------------C
Q 044538 74 GRHSRHL--ED-LL------TMEEAVHAKLRKFGLPGHNHL--T--PIANLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 74 ~~~~~~~--~~-~~------~~~~~~~~~l~~~~l~~~~~~--~--~~~~LSgGqkqrv~ia~~~l~------------~ 128 (158)
++.+|+. .+ .. ..++.+.+.++.+++...... . ...+||||||||++|||+++. +
T Consensus 400 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~ 479 (547)
T PRK10522 400 SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAAD 479 (547)
T ss_pred EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 3333321 11 00 123456778888888653321 1 135899999999999999875 6
Q ss_pred CCHHHHHHHHHHHhh----cCCeEEEEeecCC
Q 044538 129 LDTQSIVAVAVTLDE----FAGGVVLVSHDSR 156 (158)
Q Consensus 129 lD~~~~~~l~~~l~~----~~~tvi~vtHd~~ 156 (158)
||+++...+.+.+.+ .+.|+|+|||+.+
T Consensus 480 LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~ 511 (547)
T PRK10522 480 QDPHFRREFYQVLLPLLQEMGKTIFAISHDDH 511 (547)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEechH
Confidence 999999988877753 2579999999864
No 318
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.92 E-value=4.8e-25 Score=174.15 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=103.2
Q ss_pred chhhhhheeeeEEcC--CCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------
Q 044538 12 SPMLQLIEVISFSYP--NLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------- 69 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~--~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------- 69 (158)
.+.+.+.|+ ++.|. ++...++++|||++.+||.+||+|+||||||-..+.+++....
T Consensus 4 ~~lL~v~nL-sV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 4 MPLLSIRNL-SVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred Ccceeeecc-EEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 456666665 77774 4455789999999999999999999999999766555432110
Q ss_pred ------c---eeeeccccchh----hHh-------------------hHHHHHHHHHHHcCCCCCCC--CCCCCCCChHH
Q 044538 70 ------K---LRIGRHSRHLE----DLL-------------------TMEEAVHAKLRKFGLPGHNH--LTPIANLSGGQ 115 (158)
Q Consensus 70 ------~---~~~~~~~~~~~----~~~-------------------~~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGq 115 (158)
. -.++..+|... +.. ..++++.++++.+|+++... +.++++|||||
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq 162 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ 162 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence 0 01233333211 111 12366788999999976322 24569999999
Q ss_pred HHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCCC
Q 044538 116 KVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 116 kqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~~ 157 (158)
||||.||+|+.+ .||...+.+|+++|+++ +.++++||||+..
T Consensus 163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i 220 (534)
T COG4172 163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI 220 (534)
T ss_pred hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH
Confidence 999999988775 58888888888888654 6899999999864
No 319
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.92 E-value=5.6e-25 Score=170.42 Aligned_cols=140 Identities=19% Similarity=0.206 Sum_probs=92.7
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e----eeeccccch-----
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L----RIGRHSRHL----- 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~----~~~~~~~~~----- 80 (158)
+.+.+.++ ++. . ..+|+++||+|++|++++|+||||||||||+++|++..... + .+++.++..
T Consensus 38 ~~l~i~nl-s~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~~ 112 (282)
T cd03291 38 NNLFFSNL-CLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPG 112 (282)
T ss_pred CeEEEEEE-EEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccccc
Confidence 34565555 553 2 35899999999999999999999999999999999764321 1 134433321
Q ss_pred --hhHhh-----HHHHHHHHHHHcCCCCC----------CCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 81 --EDLLT-----MEEAVHAKLRKFGLPGH----------NHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 81 --~~~~~-----~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
.+.+. ....+...++.+++... ....++.+|||||+||++||++++. +||+
T Consensus 113 tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~ 192 (282)
T cd03291 113 TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 192 (282)
T ss_pred CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 11110 01122333444444211 0112357999999999999988775 6999
Q ss_pred HHHHHHHHHH-hhc--CCeEEEEeecCCC
Q 044538 132 QSIVAVAVTL-DEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 132 ~~~~~l~~~l-~~~--~~tvi~vtHd~~~ 157 (158)
.+...+.+.+ ++. +.|||++|||+++
T Consensus 193 ~~~~~l~~~ll~~~~~~~tIiiisH~~~~ 221 (282)
T cd03291 193 FTEKEIFESCVCKLMANKTRILVTSKMEH 221 (282)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCChHH
Confidence 9988887643 332 5799999999864
No 320
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.92 E-value=4.5e-25 Score=189.02 Aligned_cols=141 Identities=26% Similarity=0.327 Sum_probs=101.4
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-----------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-----------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-----------------~~~~ 74 (158)
+.+.++ +|+|+...+++|+|+||++++|+.++|+|+||||||||+++|++...+ . ..++
T Consensus 456 i~~~~v-sf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 456 ITFENI-RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEE-EEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 556666 999976545689999999999999999999999999999999964321 1 1133
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcCCC-----------CCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFGLP-----------GHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l~-----------~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|+. .+++. .++++.++++..++. .... .....||||||||++|||+++.
T Consensus 535 ~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~-~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 535 VVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred EEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEec-CCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 333321 11111 124455555555443 2222 2346899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+++. +.|+|+|||+++.
T Consensus 614 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 654 (694)
T TIGR01846 614 ILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLST 654 (694)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHH
Confidence 69999999999999876 4799999999754
No 321
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=3.6e-25 Score=164.98 Aligned_cols=140 Identities=21% Similarity=0.341 Sum_probs=105.1
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc----------------ceeeeccc
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ----------------KLRIGRHS 77 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~----------------~~~~~~~~ 77 (158)
++++.++ +++|+.. .+++|+||++++|+++|++|||||||||++|+|.+.... +-++||.+
T Consensus 2 ~L~ie~v-tK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGV-TKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecc-hhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 3455555 8888754 589999999999999999999999999999999864221 12355544
Q ss_pred cc--------hhhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------
Q 044538 78 RH--------LEDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------- 127 (158)
Q Consensus 78 ~~--------~~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------- 127 (158)
.. ..+.+ ....++..+++++++..... +++.+||-|++|++.+.++++.
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~-~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccccc-chHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 21 11111 12356778999999988765 5789999999999999666543
Q ss_pred --CCCHHHHHHHHHHHhh---cCCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDE---FAGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~---~~~tvi~vtHd~~~ 157 (158)
+|||.+.+.+.+.+.+ .+.|||++||.|+.
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~ 192 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEH 192 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHH
Confidence 7999998888777654 46899999999864
No 322
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.92 E-value=1.1e-24 Score=183.66 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=97.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c-----------------eeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K-----------------LRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~-----------------~~~~ 74 (158)
+.+.++ +++|++.. ++++|+||++++|++++|+||||||||||+++|++...+ . ..++
T Consensus 335 i~~~~v-~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 335 VEFRHI-TFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEE-EEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 555565 89997543 579999999999999999999999999999999864321 0 1133
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|.. .+++. .++++.++++..++ +.... .....||||||||++|||+++.
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~-~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG-ERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhc-CCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 333321 11111 12333344443332 22222 3456899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
+||+.+...+.+.+.+. +.|+|+|||+.+.
T Consensus 492 ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~ 532 (585)
T TIGR01192 492 ILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLST 532 (585)
T ss_pred EEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHH
Confidence 69999999999998775 4799999999753
No 323
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1.1e-25 Score=162.88 Aligned_cols=142 Identities=24% Similarity=0.357 Sum_probs=101.4
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc----------------------
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------- 70 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------- 70 (158)
+++.+.++ +++|++- .+++++||++.+||.-+|||||||||||++++|++..++.
T Consensus 4 ~iL~~~~v-sVsF~GF--~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGV-SVSFGGF--KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEece-EEEEcce--eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 45666666 9999875 3899999999999999999999999999999998643211
Q ss_pred eeeeccccch--------hhHh--------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 71 LRIGRHSRHL--------EDLL--------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 71 ~~~~~~~~~~--------~~~~--------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
..+|+.+|.+ .+++ ...+++.++|+..|+.+..+ +....||.|||||+.|+
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-RLAALLSHGQKQWLEIG 159 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-hhhhhhccchhhhhhhh
Confidence 1233333211 1111 11257888999999988665 56789999999999997
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSRLI 158 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~ 158 (158)
+.++. ++-.+.....-++++... ++|++|.|||+|+
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fv 209 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFV 209 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHH
Confidence 54443 233444555555555543 6999999999874
No 324
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=2.1e-25 Score=180.91 Aligned_cols=146 Identities=38% Similarity=0.684 Sum_probs=115.7
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce---------eeeccccchh
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL---------RIGRHSRHLE 81 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~---------~~~~~~~~~~ 81 (158)
+.|.+.+.++ +|.|+.+. .++++++|-+..++.+++|||||||||||++++.+...+.. .++++.|+..
T Consensus 386 p~pvi~~~nv-~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~ 463 (614)
T KOG0927|consen 386 PPPVIMVQNV-SFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLA 463 (614)
T ss_pred CCCeEEEecc-ccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhH
Confidence 4556666666 99998765 67899999999999999999999999999999987543321 2333323211
Q ss_pred hH--------------h---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 82 DL--------------L---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 82 ~~--------------~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
+. + ...+.++.++.+||+.......|+++||+|||.||++|+.++. +||.+
T Consensus 464 e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~ 543 (614)
T KOG0927|consen 464 EQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIE 543 (614)
T ss_pred hhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCch
Confidence 11 1 1236678899999999777778999999999999999877653 79999
Q ss_pred HHHHHHHHHhhcCCeEEEEeecCCCC
Q 044538 133 SIVAVAVTLDEFAGGVVLVSHDSRLI 158 (158)
Q Consensus 133 ~~~~l~~~l~~~~~tvi~vtHd~~~~ 158 (158)
++..+-+.|.++.++||+||||..++
T Consensus 544 tid~laeaiNe~~Ggvv~vSHDfrlI 569 (614)
T KOG0927|consen 544 TIDALAEAINEFPGGVVLVSHDFRLI 569 (614)
T ss_pred hHHHHHHHHhccCCceeeeechhhHH
Confidence 99999999999999999999998753
No 325
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-24 Score=154.48 Aligned_cols=131 Identities=24% Similarity=0.374 Sum_probs=96.7
Q ss_pred EcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeee-----cccc----c------------
Q 044538 24 SYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIG-----RHSR----H------------ 79 (158)
Q Consensus 24 ~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~-----~~~~----~------------ 79 (158)
++..+...+|.++||++.+||.+-|.||||||||||+|+++|...+. +.+. .... .
T Consensus 9 ~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~ 88 (209)
T COG4133 9 SCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKT 88 (209)
T ss_pred hhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccc
Confidence 34444456899999999999999999999999999999999753221 0000 0000 0
Q ss_pred ---hhhHhh---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHH
Q 044538 80 ---LEDLLT---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIV 135 (158)
Q Consensus 80 ---~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~ 135 (158)
..+++. ..+.+.++++.||+....+ .|+.+||-|||+||+||+..+. ++|.+...
T Consensus 89 eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~d-lp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 89 ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLED-LPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred hhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccc-cchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 001111 1255778999999988765 6899999999999999877654 69999999
Q ss_pred HHHHHHhhc---CCeEEEEeecC
Q 044538 136 AVAVTLDEF---AGGVVLVSHDS 155 (158)
Q Consensus 136 ~l~~~l~~~---~~tvi~vtHd~ 155 (158)
.+-..+... ++-||++||+.
T Consensus 168 ~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 168 LLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHhcCCCEEEEecCCc
Confidence 888888664 35799999975
No 326
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.92 E-value=6.1e-25 Score=163.96 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=85.9
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee--------eeccccc-----hhhHhh---------H
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR--------IGRHSRH-----LEDLLT---------M 86 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~--------~~~~~~~-----~~~~~~---------~ 86 (158)
+|+|+||+|++|++++|+||||||||||+++|++.... .+. ++..... ..+.+. .
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999975321 111 1110000 001110 0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh-c-CCeEEEEe
Q 044538 87 EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE-F-AGGVVLVS 152 (158)
Q Consensus 87 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~-~-~~tvi~vt 152 (158)
.+....+.+.++++... ++++.+||+|||||++||++++. ++|+.+...+.+.+.+ . ..++|++|
T Consensus 82 ~~~~~~~~~~~~l~~~~-~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vs 160 (213)
T PRK15177 82 DEFSHFCYQLTQLEQCY-TDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLT 160 (213)
T ss_pred HHHHHHHHHHhChhHHh-hchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEE
Confidence 11122233456666543 35778999999999999988775 5789888888887643 2 35899999
Q ss_pred ecCCC
Q 044538 153 HDSRL 157 (158)
Q Consensus 153 Hd~~~ 157 (158)
||+++
T Consensus 161 H~~~~ 165 (213)
T PRK15177 161 HNPRL 165 (213)
T ss_pred CCHHH
Confidence 99754
No 327
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=6.8e-25 Score=175.26 Aligned_cols=154 Identities=43% Similarity=0.702 Sum_probs=124.5
Q ss_pred CCCCCCCCCchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---------cceee
Q 044538 3 YFHEPTESTSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------QKLRI 73 (158)
Q Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------~~~~~ 73 (158)
.|++|+....|++-+-++ +|.|++. ++.+.+++|-|.--..++|+||||.|||||++++.+... .++.+
T Consensus 575 ~FPep~~L~PPvLGlH~V-tFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i 652 (807)
T KOG0066|consen 575 QFPEPTKLNPPVLGLHDV-TFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI 652 (807)
T ss_pred ecCCCCCCCCCeeecccc-cccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence 367777777778777776 9999875 468999999999999999999999999999999986432 24567
Q ss_pred eccccchhhHhhH---------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 74 GRHSRHLEDLLTM---------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 74 ~~~~~~~~~~~~~---------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
|.+.++..+.++. .+.++..|..||+..+.+.-.+..|||||+-||++|-.++.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 8776654333321 25677888999998877766778999999999999765553
Q ss_pred -CCCHHHHHHHHHHHhhcCCeEEEEeecCCCC
Q 044538 128 -HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~~ 158 (158)
+||.+++..+-+.+.++.++|||||||.+++
T Consensus 733 NNLDIESIDALaEAIney~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 733 NNLDIESIDALAEAINEYNGGVIMVSHDERLI 764 (807)
T ss_pred CCcchhhHHHHHHHHHhccCcEEEEeccccee
Confidence 6999999999999999999999999997753
No 328
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=8.8e-25 Score=165.11 Aligned_cols=127 Identities=24% Similarity=0.299 Sum_probs=96.1
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceee-eccccc-------------------hh-----
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRI-GRHSRH-------------------LE----- 81 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~-~~~~~~-------------------~~----- 81 (158)
..+++|+||+|++|++++++|||||||||++++++|...+ .+++ |+.++. .+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3589999999999999999999999999999999975432 1111 111110 00
Q ss_pred hHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHH
Q 044538 82 DLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAV 137 (158)
Q Consensus 82 ~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l 137 (158)
+.+ ...++...+.+.+++++... +|++.||-|||.|+.||++++. +||...+..+
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk-~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLK-WPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhh-hhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 001 01256667778889987655 7899999999999999888775 6999999999
Q ss_pred HHHHhhcC----CeEEEEeecCCC
Q 044538 138 AVTLDEFA----GGVVLVSHDSRL 157 (158)
Q Consensus 138 ~~~l~~~~----~tvi~vtHd~~~ 157 (158)
.+.+++++ .||+++||+++-
T Consensus 196 r~Flke~n~~~~aTVllTTH~~~d 219 (325)
T COG4586 196 REFLKEYNEERQATVLLTTHIFDD 219 (325)
T ss_pred HHHHHHHHHhhCceEEEEecchhh
Confidence 99987764 799999999863
No 329
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.92 E-value=1.6e-24 Score=196.52 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=100.9
Q ss_pred hhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc------------------------
Q 044538 15 LQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ------------------------ 69 (158)
Q Consensus 15 l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~------------------------ 69 (158)
+++.++ +|+|+.. ..++|+|+||+|++|+++||+||||||||||+++|.+....
T Consensus 1166 I~f~nV-sF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1166 IEIMDV-NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred EEEEEE-EEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 556666 9999753 24689999999999999999999999999999999864332
Q ss_pred ---------------------------------cee-----------------eeccccch-------hhHhh------H
Q 044538 70 ---------------------------------KLR-----------------IGRHSRHL-------EDLLT------M 86 (158)
Q Consensus 70 ---------------------------------~~~-----------------~~~~~~~~-------~~~~~------~ 86 (158)
.+. +++++|.. .++.. .
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at 1324 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDAT 1324 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCC
Confidence 011 22222221 01110 1
Q ss_pred HHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538 87 EEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF 144 (158)
Q Consensus 87 ~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~ 144 (158)
++++.++++..++.+... + .....||||||||++||||++. +||.++...+.+.|.+.
T Consensus 1325 ~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~ 1404 (1466)
T PTZ00265 1325 REDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDI 1404 (1466)
T ss_pred HHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHH
Confidence 355666777666533111 1 1235799999999999999875 69999999999999875
Q ss_pred ----CCeEEEEeecCC
Q 044538 145 ----AGGVVLVSHDSR 156 (158)
Q Consensus 145 ----~~tvi~vtHd~~ 156 (158)
+.|+|+|||++.
T Consensus 1405 ~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1405 KDKADKTIITIAHRIA 1420 (1466)
T ss_pred hccCCCEEEEEechHH
Confidence 479999999864
No 330
>PLN03211 ABC transporter G-25; Provisional
Probab=99.91 E-value=3e-24 Score=182.68 Aligned_cols=127 Identities=25% Similarity=0.322 Sum_probs=95.1
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------------------eeeeccccch--------hhH
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------------------LRIGRHSRHL--------EDL 83 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------------------~~~~~~~~~~--------~~~ 83 (158)
+.+|+|+|+++++||+++|+||||||||||+++|++..... ..+++..|.. .+.
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 45899999999999999999999999999999999753210 1134433321 011
Q ss_pred h------------h---HHHHHHHHHHHcCCCCCCC----CCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 84 L------------T---MEEAVHAKLRKFGLPGHNH----LTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 84 ~------------~---~~~~~~~~l~~~~l~~~~~----~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
+ . ..++++++++.+|+.+..+ ++.+..||||||||++||++++. +||..
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~ 240 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDAT 240 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHH
Confidence 0 0 1234667889999965432 23457899999999999988775 69999
Q ss_pred HHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 133 SIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 133 ~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+...+.+.++++ +.|||++||+++
T Consensus 241 ~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 241 AAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 999999888764 579999999975
No 331
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.91 E-value=1.5e-24 Score=162.86 Aligned_cols=119 Identities=24% Similarity=0.351 Sum_probs=88.6
Q ss_pred EEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------ceeeeccccch----------hhHh--------
Q 044538 38 MGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------KLRIGRHSRHL----------EDLL-------- 84 (158)
Q Consensus 38 l~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------~~~~~~~~~~~----------~~~~-------- 84 (158)
|+|++|++++|+||||||||||+++|++.... ...+++.++.. .+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999964210 11234433321 0100
Q ss_pred --------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538 85 --------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF 144 (158)
Q Consensus 85 --------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~ 144 (158)
...+++.++++.+++....+ .++.+||||||||++||++++. +||+.+...+.+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELAD-RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhc-CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01234677889999976544 5678999999999999988775 69999999999888764
Q ss_pred ---CCeEEEEeecCCC
Q 044538 145 ---AGGVVLVSHDSRL 157 (158)
Q Consensus 145 ---~~tvi~vtHd~~~ 157 (158)
+.|+|++|||+++
T Consensus 160 ~~~~~tvii~sH~~~~ 175 (223)
T TIGR03771 160 AGAGTAILMTTHDLAQ 175 (223)
T ss_pred HHcCCEEEEEeCCHHH
Confidence 4699999999763
No 332
>PLN03232 ABC transporter C family member; Provisional
Probab=99.91 E-value=1.5e-24 Score=197.65 Aligned_cols=143 Identities=14% Similarity=0.116 Sum_probs=103.9
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+++.++ +++|+...+++|+|+||+|++||.+||+|+||||||||+++|.+.... +..+
T Consensus 1234 ~I~f~nV-sf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i 1312 (1495)
T PLN03232 1234 SIKFEDV-HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVL 1312 (1495)
T ss_pred cEEEEEE-EEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhc
Confidence 3666666 999965545689999999999999999999999999999999853210 1123
Q ss_pred eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.+|+. .+++. .++++.++++..++.+... + .....||||||||++||||++.
T Consensus 1313 ~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1313 SIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 4444431 11111 1356677777766543211 1 1235899999999999999875
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++|.++...+.+.+++. ++|+|+|+|+++.
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~t 1432 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNT 1432 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence 69999999999999875 4799999998753
No 333
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.91 E-value=2.7e-24 Score=180.53 Aligned_cols=139 Identities=28% Similarity=0.406 Sum_probs=97.5
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIG 74 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~ 74 (158)
+++.++ +|.|++. +++++|+||++++||.+||+|||||||||+++++.+.... +..++
T Consensus 329 I~f~~v-sf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 329 IEFENV-SFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred EEEEEE-EEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 566666 9999853 3589999999999999999999999999999999853221 11233
Q ss_pred ccccch-------hhHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 75 RHSRHL-------EDLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+.+|+. .++.. .++++.++++..+ ++.... .....||||||||++||||++.
T Consensus 407 ~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg-e~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred EEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceec-CCCccCCHHHHHHHHHHHHHhcCCC
Confidence 333321 11111 1245555555443 222222 2335899999999999999875
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
++|+++...+.+.+.+. +.|+|+|+|++.
T Consensus 486 ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRls 525 (567)
T COG1132 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525 (567)
T ss_pred EEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHh
Confidence 69999999999988643 358999999874
No 334
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.91 E-value=3.3e-24 Score=161.35 Aligned_cols=129 Identities=25% Similarity=0.278 Sum_probs=86.6
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCCcchHH-HHHHhhh---------------------hc--c---e--eeec----
Q 044538 29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLP-NLLAVRR---------------------RQ--K---L--RIGR---- 75 (158)
Q Consensus 29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl-~~i~~~~---------------------~~--~---~--~~~~---- 75 (158)
...+|+++||+|++||+++|+||||||||||+ ..+.... .. . . .+..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 34689999999999999999999999999995 3332100 00 0 0 0000
Q ss_pred ---ccc-ch---------hhHhhH---HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 76 ---HSR-HL---------EDLLTM---EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 76 ---~~~-~~---------~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
.+. .. ...+.. .....+.++.+++.....++++.+|||||+||++||++++.
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 000 00 000000 11224678889997532345679999999999999988753
Q ss_pred --CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 128 --HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+||+.....+.+.+++. +.|+|+||||+++
T Consensus 167 t~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~ 201 (226)
T cd03270 167 SIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDT 201 (226)
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHH
Confidence 58899988888887653 5799999999753
No 335
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.91 E-value=2.7e-24 Score=182.99 Aligned_cols=143 Identities=29% Similarity=0.394 Sum_probs=106.5
Q ss_pred hhhhhheeeeEEcCCC--CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------
Q 044538 13 PMLQLIEVISFSYPNL--QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------- 69 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~--~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------- 69 (158)
+|+.+.++ ++.|+.. ...+|+++||++++||+++|+||||||||||+++|++....
T Consensus 3 ~~l~~~nl-~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 3 ALLELKDI-RRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred cEEEEeeE-EEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 46677676 9999642 23589999999999999999999999999999999964210
Q ss_pred ---ceeeeccccch--------hhHh------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 70 ---KLRIGRHSRHL--------EDLL------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 70 ---~~~~~~~~~~~--------~~~~------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
+..+++.++.. .+.. ...+++.++++.+++.+..+ +++.+||+||+||++||++++
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-~~~~~LS~Gq~qrv~LAraL~ 160 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-YQPSQLSGGQQQRVSIARALM 160 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-CCcccCCHHHHHHHHHHHHHh
Confidence 11233333221 1111 01235677889999986544 567899999999999999887
Q ss_pred h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
. +||+.++..+.+.++++ +.|+|++||+.++
T Consensus 161 ~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~ 206 (648)
T PRK10535 161 NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQV 206 (648)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 5 69999999999888765 4799999999753
No 336
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.91 E-value=2.2e-24 Score=174.09 Aligned_cols=141 Identities=25% Similarity=0.335 Sum_probs=97.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.++++ .+.-++.++++++++||++.+||.++||||||||||||.|++.+.+.+ -..+
T Consensus 334 ~L~Ve~l-~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 334 ALSVERL-TAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred eeeEeee-eecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 4666666 666677777899999999999999999999999999999999864321 1236
Q ss_pred eccccchh-------hHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHLE-------DLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~~-------~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
||.+|+.. ++.. ..+.+-++.+.-| .+...-. -...||||||||+++|||+..
T Consensus 413 GYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 413 GYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred CcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCC
Confidence 77776531 1110 0122222222222 1111111 125899999999999998764
Q ss_pred ----------CCCHHHHHHHHHHHhh---cCCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDE---FAGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~---~~~tvi~vtHd~~ 156 (158)
+||.+....+.+.+.+ .++|+|+|||...
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs 533 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS 533 (580)
T ss_pred cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence 7999999988887744 4689999999864
No 337
>PLN03130 ABC transporter C family member; Provisional
Probab=99.91 E-value=3.1e-24 Score=196.16 Aligned_cols=143 Identities=17% Similarity=0.161 Sum_probs=103.7
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+++.++ +++|+...+++|+|+||+|++||.+||+|+||||||||+++|.+.... +..+
T Consensus 1237 ~I~f~nV-sf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~I 1315 (1622)
T PLN03130 1237 SIKFEDV-VLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVL 1315 (1622)
T ss_pred cEEEEEE-EEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhcc
Confidence 4666666 999976545689999999999999999999999999999999853210 1124
Q ss_pred eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------C----CCCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------L----TPIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~----~~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.+|+. .+++. .++++.++++..++.+... + .....||||||||+|||||++.
T Consensus 1316 siVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 4444432 11111 1355667777665532111 1 1235899999999999999885
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++|.++...+.+.+++. ++|+|+|+|+++.
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~t 1435 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNT 1435 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHH
Confidence 69999999999999875 4799999998753
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.91 E-value=2.6e-24 Score=195.27 Aligned_cols=142 Identities=21% Similarity=0.289 Sum_probs=100.3
Q ss_pred hhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce------------------e
Q 044538 15 LQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL------------------R 72 (158)
Q Consensus 15 l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~------------------~ 72 (158)
+++.++ +++|+... .++|+|+||+|++|++++|+||||||||||+++|++...+ .+ .
T Consensus 383 I~~~nV-sf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 383 IQFKNV-RFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred EEEEEE-EEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 555565 99997542 3689999999999999999999999999999999864211 01 1
Q ss_pred eeccccch-------hhHhh------------------------------------------------------------
Q 044538 73 IGRHSRHL-------EDLLT------------------------------------------------------------ 85 (158)
Q Consensus 73 ~~~~~~~~-------~~~~~------------------------------------------------------------ 85 (158)
+++.+|.. .+.+.
T Consensus 462 Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 541 (1466)
T PTZ00265 462 IGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541 (1466)
T ss_pred ccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccccc
Confidence 33333221 00000
Q ss_pred ---HHHHHHHHHHHcCCCCCC----------CCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHH
Q 044538 86 ---MEEAVHAKLRKFGLPGHN----------HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT 140 (158)
Q Consensus 86 ---~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~ 140 (158)
.++++.++++.+++.+.. ......+||||||||++||||++. +||+.+...+.+.
T Consensus 542 ~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~ 621 (1466)
T PTZ00265 542 QTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621 (1466)
T ss_pred ccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 013455566666654321 013457899999999999999875 6999999999999
Q ss_pred Hhhc----CCeEEEEeecCCC
Q 044538 141 LDEF----AGGVVLVSHDSRL 157 (158)
Q Consensus 141 l~~~----~~tvi~vtHd~~~ 157 (158)
+++. +.|+|+|||+++.
T Consensus 622 L~~~~~~~g~TvIiIsHrls~ 642 (1466)
T PTZ00265 622 INNLKGNENRITIIIAHRLST 642 (1466)
T ss_pred HHHHhhcCCCEEEEEeCCHHH
Confidence 8776 4799999999753
No 339
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.1e-24 Score=158.64 Aligned_cols=141 Identities=23% Similarity=0.330 Sum_probs=98.8
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---------------------ee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---------------------LR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---------------------~~ 72 (158)
|+++.++ ++...+. +.+|+++||+|++||+.+|+||||||||||..+|+|..... .+
T Consensus 3 ~L~I~dL-hv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDL-HVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeee-EEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 4555554 6666553 36899999999999999999999999999999999643211 11
Q ss_pred --eeccccch--------hhH---------------hhHHHHHHHHHHHcCCCCCCCCCCCC-CCChHHHHHHHHHHHHh
Q 044538 73 --IGRHSRHL--------EDL---------------LTMEEAVHAKLRKFGLPGHNHLTPIA-NLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 73 --~~~~~~~~--------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ia~~~l 126 (158)
+...+|++ .+. ....+++++.++.+++++....|.+. -+|||||+|..|+.+++
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~ 160 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLL 160 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHh
Confidence 11112211 011 11235677889999998744445553 59999999999987665
Q ss_pred h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
. +||..+...+.+.+.++ +.++++|||..+
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 4 68988887776666554 579999999754
No 340
>PTZ00243 ABC transporter; Provisional
Probab=99.91 E-value=4.4e-24 Score=194.81 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=105.4
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
.+.+.++ +++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.+.... +..+
T Consensus 1308 ~I~f~nV-sf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1308 SLVFEGV-QMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred eEEEEEE-EEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 3666666 999976555689999999999999999999999999999999853210 1124
Q ss_pred eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------CC----CCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------LT----PIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~~----~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.+|.. .+++. .++++.++++..++.+... +. ...+||||||||+|||||++.
T Consensus 1387 ~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1387 SMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred eEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 4444431 11111 1466788888887754211 11 235799999999999999885
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
++|.++...+.+.+++. +.|+|+|+|+++
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ 1506 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLH 1506 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHH
Confidence 48999999999999775 479999999875
No 341
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.91 E-value=9.1e-24 Score=147.61 Aligned_cols=139 Identities=31% Similarity=0.331 Sum_probs=97.8
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceee
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~ 73 (158)
+.+.|+ +...++. ..|-++||+|.+||++.|+||||||||||+..+.+.... ...+
T Consensus 3 l~l~nv-sl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~ 79 (213)
T COG4136 3 LCLKNV-SLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQI 79 (213)
T ss_pred eeeeee-eecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhe
Confidence 344455 6666554 468899999999999999999999999999988753211 1123
Q ss_pred eccccc--hhhHh-----------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------
Q 044538 74 GRHSRH--LEDLL-----------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 74 ~~~~~~--~~~~~-----------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
|..+|+ +++.+ .....+..++++.|++...+. -+.+||||||-||++-|+++.
T Consensus 80 GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-dP~tlSGGQrARvaL~R~Lla~Pk~lLL 158 (213)
T COG4136 80 GILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-DPATLSGGQRARVALLRALLAQPKALLL 158 (213)
T ss_pred eeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-ChhhcCcchHHHHHHHHHHHhCcceeee
Confidence 332222 11111 123456788999999987774 458999999999999877765
Q ss_pred -----CCCHH----HHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 128 -----HLDTQ----SIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----~lD~~----~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+||.. .++++...++..+..+|+||||...
T Consensus 159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 35543 3455666667777889999999864
No 342
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=3.4e-24 Score=172.53 Aligned_cols=140 Identities=21% Similarity=0.344 Sum_probs=106.6
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------cee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~ 72 (158)
.+.+.++ ++.|++ ..+.++|||+|++||+.||+|+||||||||+++|.|...+ +..
T Consensus 4 ~l~~~~i-tK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGI-TKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEecc-EEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4556666 999984 3589999999999999999999999999999999864321 123
Q ss_pred eeccccchh--hHh---------------------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhhC-
Q 044538 73 IGRHSRHLE--DLL---------------------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYH- 128 (158)
Q Consensus 73 ~~~~~~~~~--~~~---------------------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~~- 128 (158)
+|...|++. +.+ ...+++.++.+++|++-..+ .++.+||-||||||.|-+++..+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-~~V~dLsVG~qQRVEIlKaLyr~a 159 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-AKVADLSVGEQQRVEILKALYRGA 159 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-ceeecCCcchhHHHHHHHHHhcCC
Confidence 444444431 111 22467788899999976544 67899999999999998887764
Q ss_pred -----------CCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 129 -----------LDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 129 -----------lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
|-|...+++++.++++ +.|||+|||-+++
T Consensus 160 ~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 160 RLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 5588888888877655 5899999998754
No 343
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=4.7e-24 Score=186.46 Aligned_cols=142 Identities=28% Similarity=0.337 Sum_probs=98.5
Q ss_pred hhhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------cee
Q 044538 14 MLQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLR 72 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~ 72 (158)
.+++.++ .|+|+..+ ..+|+++||.|++|+.++|+|||||||||++.+|.....+ +-.
T Consensus 350 ~ief~nV-~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 350 EIEFRNV-CFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred ceEEEEE-EecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 3566666 99998764 4789999999999999999999999999999999843211 112
Q ss_pred eeccccchh-------hHhh------HHHHHHHHHHHcC-----------CCCCCCCCCCCCCChHHHHHHHHHHHHhh-
Q 044538 73 IGRHSRHLE-------DLLT------MEEAVHAKLRKFG-----------LPGHNHLTPIANLSGGQKVRVMFTLVSMY- 127 (158)
Q Consensus 73 ~~~~~~~~~-------~~~~------~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgGqkqrv~ia~~~l~- 127 (158)
+|.+.|.+. ++.. ..+++.++.+..+ ++..... +..+||||||||+|||||++.
T Consensus 429 iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge-~g~qLSGGQKQRIAIARalv~~ 507 (1228)
T KOG0055|consen 429 IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGE-RGVQLSGGQKQRIAIARALVRN 507 (1228)
T ss_pred cCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccC-CCCCCChHHHHHHHHHHHHHhC
Confidence 333333210 1100 0123333333222 2222222 235799999999999999875
Q ss_pred -----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
.||+++...+.+.|++. +.|.|+|+|++..
T Consensus 508 P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLSt 550 (1228)
T KOG0055|consen 508 PKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLST 550 (1228)
T ss_pred CCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhh
Confidence 69999999999999876 4699999999754
No 344
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.90 E-value=6.9e-24 Score=193.51 Aligned_cols=143 Identities=21% Similarity=0.179 Sum_probs=104.3
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~ 73 (158)
-+++.++ +++|+....++|+|+||+|++||.+||+|++|||||||+++|.+.... +..+
T Consensus 1284 ~I~f~nV-sf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i 1362 (1522)
T TIGR00957 1284 RVEFRNY-CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKI 1362 (1522)
T ss_pred cEEEEEE-EEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcC
Confidence 3666666 999976545689999999999999999999999999999999853210 1123
Q ss_pred eccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------CC----CCCCCChHHHHHHHHHHHHhh----
Q 044538 74 GRHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------LT----PIANLSGGQKVRVMFTLVSMY---- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~~----~~~~LSgGqkqrv~ia~~~l~---- 127 (158)
++.+|+. .+++. .++++.++++..++.+... +. ....||||||||+|||||++.
T Consensus 1363 ~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1363 TIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred eEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 4444431 11111 1356677777776543111 11 235799999999999999875
Q ss_pred --------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 --------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 --------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++|.++...+.+.+++. ++|+|+|+|+++.
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~t 1482 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNT 1482 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 69999999999999775 4799999998753
No 345
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.90 E-value=2.3e-23 Score=189.74 Aligned_cols=142 Identities=19% Similarity=0.238 Sum_probs=105.0
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------------------ceeee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------------------KLRIG 74 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------------------~~~~~ 74 (158)
.+.+.++ +++|+...+++|+|+||+|++||.+||+|+||||||||+++|.+.... +..++
T Consensus 1217 ~I~f~nV-s~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGL-TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEE-EEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceE
Confidence 3666666 999986556799999999999999999999999999999999854321 11234
Q ss_pred ccccch-------hhHhh-----HHHHHHHHHHHcCCCCCCC------CCC----CCCCChHHHHHHHHHHHHhh-----
Q 044538 75 RHSRHL-------EDLLT-----MEEAVHAKLRKFGLPGHNH------LTP----IANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 75 ~~~~~~-------~~~~~-----~~~~~~~~l~~~~l~~~~~------~~~----~~~LSgGqkqrv~ia~~~l~----- 127 (158)
+.+|.. .+++. .++++.++++.+++.+... +.. ...||||||||+|||||++.
T Consensus 1296 ~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1296 VIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred EEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 444431 11111 2466778888887643211 111 24799999999999999875
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
++|..+...+.+.|++. ++|||+|||+++
T Consensus 1376 lLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ 1413 (1490)
T TIGR01271 1376 LLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVE 1413 (1490)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 69999999999999875 479999999865
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=9e-24 Score=150.45 Aligned_cols=122 Identities=32% Similarity=0.477 Sum_probs=85.4
Q ss_pred eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccchhhHhhHHHHHHHHHHHcCC
Q 044538 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHLEDLLTMEEAVHAKLRKFGL 99 (158)
Q Consensus 21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 99 (158)
+++.|++. .+++++||++++|++++|+||||||||||+++|++..... ..+-+....... .. ..+....+++
T Consensus 5 ~~~~~~~~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~-~~----~~~~~~~i~~ 77 (157)
T cd00267 5 LSFRYGGR--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK-LP----LEELRRRIGY 77 (157)
T ss_pred EEEEeCCe--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEccc-CC----HHHHHhceEE
Confidence 37777653 5899999999999999999999999999999999865322 111111111100 00 0011111111
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 100 PGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 100 ~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
+.+||+||+||++||++++. +||..+...+.+.+.++ +.|+|++||++++
T Consensus 78 --------~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~ 142 (157)
T cd00267 78 --------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPEL 142 (157)
T ss_pred --------EeeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 12399999999999988764 69999999999888764 3599999999754
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.89 E-value=2.9e-23 Score=189.20 Aligned_cols=143 Identities=22% Similarity=0.257 Sum_probs=100.1
Q ss_pred hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------ceeeeccccch----
Q 044538 14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------KLRIGRHSRHL---- 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------~~~~~~~~~~~---- 80 (158)
.+.+.++ +|.|+.. ..++|+|+||++++|+.++|+||+|||||||+++|.+.... +..+++.+|..
T Consensus 614 ~I~~~~v-sF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~ 692 (1495)
T PLN03232 614 AISIKNG-YFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFN 692 (1495)
T ss_pred cEEEEee-EEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcccccc
Confidence 3556665 9999753 34689999999999999999999999999999999975432 12355555542
Q ss_pred ---hhHhh-----HHHHHHHHHHHcCCCCCC------CCC----CCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 81 ---EDLLT-----MEEAVHAKLRKFGLPGHN------HLT----PIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 81 ---~~~~~-----~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.++.. .+++..++++..++.+.. .+. ....||||||||++||||+.. +||
T Consensus 693 gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD 772 (1495)
T PLN03232 693 ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772 (1495)
T ss_pred ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 11111 134566666665553211 111 235799999999999999775 699
Q ss_pred HHHHHHHHHH-Hhh--cCCeEEEEeecCCC
Q 044538 131 TQSIVAVAVT-LDE--FAGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~~-l~~--~~~tvi~vtHd~~~ 157 (158)
.+....+++. +.. .+.|+|+|||+++.
T Consensus 773 ~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~ 802 (1495)
T PLN03232 773 AHVAHQVFDSCMKDELKGKTRVLVTNQLHF 802 (1495)
T ss_pred HHHHHHHHHHHhhhhhcCCEEEEEECChhh
Confidence 9988877654 443 24799999999753
No 348
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.89 E-value=4e-23 Score=188.58 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=98.9
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c----eeeeccccchh-----
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K----LRIGRHSRHLE----- 81 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~----~~~~~~~~~~~----- 81 (158)
.+.+.++ ++.|+....++|+|+||++++|++++|+||||||||||+++|++.... . ..+++.+|...
T Consensus 636 ~i~~~~~-~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 636 SITVHNA-TFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred cEEEEEe-EEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCc
Confidence 4566666 899975445689999999999999999999999999999999975422 1 13455554321
Q ss_pred --hHhh-----HHHHHHHHHHHcC------CCCCC----CCCCCCCCChHHHHHHHHHHHHhh------------CCCHH
Q 044538 82 --DLLT-----MEEAVHAKLRKFG------LPGHN----HLTPIANLSGGQKVRVMFTLVSMY------------HLDTQ 132 (158)
Q Consensus 82 --~~~~-----~~~~~~~~l~~~~------l~~~~----~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~ 132 (158)
++.. ..++.+++++..+ ..+.. ...+..+||||||||++||||+.. +||+.
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~ 794 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 794 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 1110 0122233333222 21111 113457899999999999999775 69999
Q ss_pred HHHHHHHHHhh-----cCCeEEEEeecCCC
Q 044538 133 SIVAVAVTLDE-----FAGGVVLVSHDSRL 157 (158)
Q Consensus 133 ~~~~l~~~l~~-----~~~tvi~vtHd~~~ 157 (158)
....+.+.+.+ .+.|+|+||||+++
T Consensus 795 ~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~ 824 (1522)
T TIGR00957 795 VGKHIFEHVIGPEGVLKNKTRILVTHGISY 824 (1522)
T ss_pred HHHHHHHHHhhhhhhhcCCEEEEEeCChhh
Confidence 99999988753 24799999999864
No 349
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.89 E-value=4.5e-23 Score=180.38 Aligned_cols=140 Identities=27% Similarity=0.365 Sum_probs=97.4
Q ss_pred hhhheeeeEEcCCCC-CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---c-----------------ceee
Q 044538 15 LQLIEVISFSYPNLQ-DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---Q-----------------KLRI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~~~-~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---~-----------------~~~~ 73 (158)
+++.++ +|.||..+ .++|+|+||++++|+.+||+|||||||||.+.+|-.... . +..+
T Consensus 988 I~~~~V-~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 988 IEFRNV-SFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEeee-EeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 566666 99998654 368999999999999999999999999999988852110 0 0112
Q ss_pred eccccch-------hhHh------hHHHHHHHHHHHcCC-----------CCCCCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 74 GRHSRHL-------EDLL------TMEEAVHAKLRKFGL-----------PGHNHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 74 ~~~~~~~-------~~~~------~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
+.+.|.+ .++. -..+++.++++..+. +.... .+..+||||||||+|||||++.
T Consensus 1067 ~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG-erG~QLSGGQKQRIAIARAilRnP 1145 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVG-ERGVQLSGGQKQRIAIARAILRNP 1145 (1228)
T ss_pred ceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccC-cccCcCCchHHHHHHHHHHHHcCC
Confidence 2222211 0000 012344455544332 22222 1346999999999999999876
Q ss_pred ----------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 128 ----------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
.||.++.+.+.+.|++. +.|+|+|.|.+.
T Consensus 1146 kILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1146 KILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLS 1186 (1228)
T ss_pred CeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchh
Confidence 59999999999999876 469999999875
No 350
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.7e-24 Score=160.05 Aligned_cols=122 Identities=25% Similarity=0.287 Sum_probs=94.6
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------------------------cceeeeccccc--hhhHhh---
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------------------------QKLRIGRHSRH--LEDLLT--- 85 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------------------------~~~~~~~~~~~--~~~~~~--- 85 (158)
+++|+.+...++||.|+||||||||+|+|+|..+ .+.++||++|+ +++.++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 7999999989999999999999999999996432 12346776664 122221
Q ss_pred ---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538 86 ---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF 144 (158)
Q Consensus 86 ---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~ 144 (158)
......++.+.+|+.+...+ ++.+|||||||||+|+||++. .||.....+++-.++++
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL 174 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL 174 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhh-CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH
Confidence 23567788999999987764 558999999999999999876 58888888887666554
Q ss_pred ----CCeEEEEeecCCC
Q 044538 145 ----AGGVVLVSHDSRL 157 (158)
Q Consensus 145 ----~~tvi~vtHd~~~ 157 (158)
+..|++|||.+++
T Consensus 175 ~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 175 RDEINIPILYVSHSLDE 191 (352)
T ss_pred HHhcCCCEEEEecCHHH
Confidence 4689999998764
No 351
>PLN03130 ABC transporter C family member; Provisional
Probab=99.89 E-value=4.6e-23 Score=188.61 Aligned_cols=143 Identities=22% Similarity=0.245 Sum_probs=100.2
Q ss_pred hhhhheeeeEEcCCC-CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------eeeeccccch----
Q 044538 14 MLQLIEVISFSYPNL-QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------LRIGRHSRHL---- 80 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~-~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------~~~~~~~~~~---- 80 (158)
.+.+.++ +|.|+.. ..++|+|+||+|++|+.++|+||+|||||||+++|.+..... ..+++.+|..
T Consensus 614 ~I~~~nv-sf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfn 692 (1622)
T PLN03130 614 AISIKNG-YFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFN 692 (1622)
T ss_pred ceEEEee-EEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCC
Confidence 3566666 9999753 246899999999999999999999999999999999754321 2355655542
Q ss_pred ---hhHhh-----HHHHHHHHHHHcCCCCCC------CC----CCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 81 ---EDLLT-----MEEAVHAKLRKFGLPGHN------HL----TPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 81 ---~~~~~-----~~~~~~~~l~~~~l~~~~------~~----~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.++.. .+++..++++..++.+.. .+ .....||||||||++||||+.. +||
T Consensus 693 gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD 772 (1622)
T PLN03130 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772 (1622)
T ss_pred CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccC
Confidence 11111 135566666666553211 11 1235799999999999999775 699
Q ss_pred HHHHHHHHH-HHhhc--CCeEEEEeecCCC
Q 044538 131 TQSIVAVAV-TLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~-~l~~~--~~tvi~vtHd~~~ 157 (158)
++....+++ .+... +.|+|+|||++..
T Consensus 773 ~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~ 802 (1622)
T PLN03130 773 AHVGRQVFDKCIKDELRGKTRVLVTNQLHF 802 (1622)
T ss_pred HHHHHHHHHHHhhHHhcCCEEEEEECCHhH
Confidence 988877764 44432 4799999999753
No 352
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.89 E-value=1.6e-22 Score=183.26 Aligned_cols=140 Identities=19% Similarity=0.269 Sum_probs=102.3
Q ss_pred hhhheeeeEEcCC--CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------cce-------------ee
Q 044538 15 LQLIEVISFSYPN--LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKL-------------RI 73 (158)
Q Consensus 15 l~~~~~~~~~~~~--~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~-------------~~ 73 (158)
+...++ ++.|+. +.+.+|+|+|+++++|++++|+||||||||||+++|++... +.+ .+
T Consensus 760 l~~~nl-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 760 FHWRNL-TYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred EEEEee-EEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 344444 777742 23468999999999999999999999999999999997542 111 13
Q ss_pred eccccch--------hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCC----CCChHHHHHHHHHHHHh
Q 044538 74 GRHSRHL--------EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIA----NLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 74 ~~~~~~~--------~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqrv~ia~~~l 126 (158)
++.+|.. .+.+ ...++++++++.+++.+..+ +.++ .||||||||++||++++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d-~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYAD-AVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCC-CeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 3433321 0111 01245678899999976544 4444 79999999999998876
Q ss_pred h-------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 127 Y-------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 127 ~-------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
. +||..+...+++.|++. +.|||+++||++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~ 963 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 4 68999999999888765 479999999975
No 353
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.89 E-value=5.2e-23 Score=151.87 Aligned_cols=119 Identities=22% Similarity=0.321 Sum_probs=85.9
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------------ceeeeccccchhhHh--h
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------------KLRIGRHSRHLEDLL--T 85 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------------~~~~~~~~~~~~~~~--~ 85 (158)
+++++++.+| +++|+||||||||||++++++.... ...+++.+|.....+ .
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 5789999999 9999999999999999999753210 112334333322111 1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc--CCe
Q 044538 86 MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF--AGG 147 (158)
Q Consensus 86 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~--~~t 147 (158)
..+++.++++. .+.. ++++.+||||||||++||++++ . +||+.....+.+.+++. +.+
T Consensus 93 ~~~~~~~~l~~---~~~~-~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~t 168 (197)
T cd03278 93 SQGDVSEIIEA---PGKK-VQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQ 168 (197)
T ss_pred ehhhHHHHHhC---CCcc-ccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCE
Confidence 13456666666 3333 3567899999999999998764 1 59999999999988876 368
Q ss_pred EEEEeecCCC
Q 044538 148 VVLVSHDSRL 157 (158)
Q Consensus 148 vi~vtHd~~~ 157 (158)
||++|||+++
T Consensus 169 iIiitH~~~~ 178 (197)
T cd03278 169 FIVITHRKGT 178 (197)
T ss_pred EEEEECCHHH
Confidence 9999999753
No 354
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.89 E-value=9e-23 Score=172.86 Aligned_cols=127 Identities=25% Similarity=0.322 Sum_probs=95.5
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------e--------------eeeccccch--------
Q 044538 29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------L--------------RIGRHSRHL-------- 80 (158)
Q Consensus 29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------~--------------~~~~~~~~~-------- 80 (158)
.+++|+|+|+++++||+++|+||||||||||+++|++..... + .+++.+|..
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 456899999999999999999999999999999999754221 1 123333321
Q ss_pred hhHh---------------hHHHHHHHHHHHcCCCCCCCCCCCC------CCChHHHHHHHHHHHHhh------------
Q 044538 81 EDLL---------------TMEEAVHAKLRKFGLPGHNHLTPIA------NLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 81 ~~~~---------------~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqrv~ia~~~l~------------ 127 (158)
.+.+ ...+++.++++.+|+.+..+ .+++ .||||||||++||++++.
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCAN-TRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCc-CccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 0111 01235778899999976544 4444 599999999999998775
Q ss_pred CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||..+...+++.+++. +.|+|+++|++.
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~ 227 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPS 227 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 69999999999888765 479999999974
No 355
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=4.6e-23 Score=153.79 Aligned_cols=128 Identities=24% Similarity=0.282 Sum_probs=88.0
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce---------------eeeccccch-hh----------
Q 044538 29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL---------------RIGRHSRHL-ED---------- 82 (158)
Q Consensus 29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~---------------~~~~~~~~~-~~---------- 82 (158)
...+|+||||++++||.+||+|+||||||||+++|++...+.. ..|+.++.. .+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 4578999999999999999999999999999999997543211 112221110 00
Q ss_pred --HhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhhC------------CCHHHHHHHHHHHhhc---C
Q 044538 83 --LLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMYH------------LDTQSIVAVAVTLDEF---A 145 (158)
Q Consensus 83 --~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~~------------lD~~~~~~l~~~l~~~---~ 145 (158)
....++.+++..+.-.|.+..+ .|+.++|-||+-|+++|.+...+ -|+.=.+.-.+.+.++ +
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~-~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~ 197 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFID-QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhh-CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcC
Confidence 0112355666666667766654 79999999999999998776554 3444444444444333 4
Q ss_pred CeEEEEeecCCC
Q 044538 146 GGVVLVSHDSRL 157 (158)
Q Consensus 146 ~tvi~vtHd~~~ 157 (158)
.|+|+||||++.
T Consensus 198 ~tiv~VSHd~~~ 209 (249)
T COG1134 198 KTIVLVSHDLGA 209 (249)
T ss_pred CEEEEEECCHHH
Confidence 799999999864
No 356
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.1e-23 Score=148.44 Aligned_cols=127 Identities=27% Similarity=0.351 Sum_probs=96.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh----------------------------cceeeeccccchh
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR----------------------------QKLRIGRHSRHLE 81 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~----------------------------~~~~~~~~~~~~~ 81 (158)
.++++++||+++.|||+++-||||+|||||++++.+... .+..+||..|.+.
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 478999999999999999999999999999999974211 1122455443321
Q ss_pred -------------hH-------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CC
Q 044538 82 -------------DL-------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HL 129 (158)
Q Consensus 82 -------------~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~l 129 (158)
+. -....++..++.++++++....-++.++||||||||.|||.++. .|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 00 01235677899999998866666779999999999999988764 58
Q ss_pred CHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 130 DTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 130 D~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
|..++..+++++++. +.++|=|=||.+
T Consensus 184 Da~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 184 DATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred cccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 999999999988664 467888889853
No 357
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.88 E-value=5.7e-23 Score=150.80 Aligned_cols=126 Identities=24% Similarity=0.366 Sum_probs=88.2
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------eeeccccchh----hHhh
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL-----------------RIGRHSRHLE----DLLT 85 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~-----------------~~~~~~~~~~----~~~~ 85 (158)
+++|+++|++|++|+++.|+|.||||||||+++++|.... .+ .+++++|++. +.++
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lT 98 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccccc
Confidence 4689999999999999999999999999999999964221 11 1122223211 1111
Q ss_pred H------------------------HHHHHHHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 86 M------------------------EEAVHAKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 86 ~------------------------~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
. .+..++.++.+ |+++... .++.-|||||||-+++++|.+.
T Consensus 99 ieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~-~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLS-DRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred HHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhc-ChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 1 12233444444 4455444 4778999999999999887664
Q ss_pred CCCHHHHHHHHH----HHhhcCCeEEEEeecCC
Q 044538 128 HLDTQSIVAVAV----TLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 128 ~lD~~~~~~l~~----~l~~~~~tvi~vtHd~~ 156 (158)
+|||.....+++ ++.+.+.|.+||||+++
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 699988877775 45566789999999985
No 358
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.8e-23 Score=167.05 Aligned_cols=135 Identities=26% Similarity=0.387 Sum_probs=102.2
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc------eeeeccc--cc-------hhhHh--
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK------LRIGRHS--RH-------LEDLL-- 84 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~------~~~~~~~--~~-------~~~~~-- 84 (158)
++.|++. .+|++-++++..|..|||+|+||+|||||+|+|+...-.. .+-.+.. +. ..+.+
T Consensus 87 dLa~G~k--~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 87 DLAYGGK--ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred eeeecch--hhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence 7777754 5799999999999999999999999999999998521110 0000000 00 00000
Q ss_pred --------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc
Q 044538 85 --------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF 144 (158)
Q Consensus 85 --------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~ 144 (158)
+..+....+|..+|+.+....+|..+||||-|-|+++|||++. +||..+..++.+.|..+
T Consensus 165 e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~ 244 (582)
T KOG0062|consen 165 EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW 244 (582)
T ss_pred hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC
Confidence 1122233378899998877778999999999999999999875 68999999999999999
Q ss_pred CCeEEEEeecCCCC
Q 044538 145 AGGVVLVSHDSRLI 158 (158)
Q Consensus 145 ~~tvi~vtHd~~~~ 158 (158)
+.|+|+||||..|+
T Consensus 245 ~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 245 KITSLIVSHDRNFL 258 (582)
T ss_pred CceEEEEeccHHHH
Confidence 99999999998763
No 359
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.1e-22 Score=161.63 Aligned_cols=141 Identities=26% Similarity=0.360 Sum_probs=96.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh--------------------hcceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR--------------------RQKLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~--------------------~~~~~~ 73 (158)
.+++.|+ +|.|..+. ++|+||||++.+|+.+||+||||+||||++|++...- .-+..+
T Consensus 537 ~i~fsnv-tF~Y~p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNV-TFAYDPGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEe-EEecCCCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 3567777 99998764 6899999999999999999999999999999986210 011234
Q ss_pred eccccch---hhHh----------hHHHHHHHHHHHc-------CCCCCCCC---CCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL---EDLL----------TMEEAVHAKLRKF-------GLPGHNHL---TPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~---~~~~----------~~~~~~~~~l~~~-------~l~~~~~~---~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
|.++|+. .+.. ...+++.++.+.. ++++.-.. .+.-.|||||||||+|||+++.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 5444431 0000 0123333333332 33321110 1224799999999999998764
Q ss_pred ---------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 156 (158)
.||..+.+.+...+.+.. .|-|+|.|.+.
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLS 734 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLS 734 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeeh
Confidence 589999999999998874 58889999875
No 360
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.88 E-value=2.4e-22 Score=144.70 Aligned_cols=142 Identities=21% Similarity=0.219 Sum_probs=98.8
Q ss_pred hhhhheeeeEEcCC-------CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e------------
Q 044538 14 MLQLIEVISFSYPN-------LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L------------ 71 (158)
Q Consensus 14 ~l~~~~~~~~~~~~-------~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~------------ 71 (158)
.+++.++ +++|.+ ....+++.|||++.+|+.++++|.||||||||.++++|...+. +
T Consensus 4 LLeV~nL-sKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 4 LLEVRNL-SKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred hhhhhhh-hhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 4455554 655532 1235789999999999999999999999999999998632210 0
Q ss_pred -----eeeccccch----hhH----------------h---hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHH
Q 044538 72 -----RIGRHSRHL----EDL----------------L---TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 72 -----~~~~~~~~~----~~~----------------~---~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
.+...+|+. .+. + ...+++.+.++.+|+-+.....++..||-|||||||+||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 011111111 000 0 113567788999999765555677999999999999999
Q ss_pred HHhh------------CCCHHHHHHHHHHHh----hcCCeEEEEeecCC
Q 044538 124 VSMY------------HLDTQSIVAVAVTLD----EFAGGVVLVSHDSR 156 (158)
Q Consensus 124 ~~l~------------~lD~~~~~~l~~~l~----~~~~tvi~vtHd~~ 156 (158)
|++. +||...+.++.+++- +.+.+-|+|+.++.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG 211 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG 211 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh
Confidence 8764 689888887777653 44678888888764
No 361
>PLN03140 ABC transporter G family member; Provisional
Probab=99.88 E-value=3.5e-22 Score=181.15 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=94.7
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-----c--------------eeeeccccch--------hh
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-----K--------------LRIGRHSRHL--------ED 82 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-----~--------------~~~~~~~~~~--------~~ 82 (158)
..+|+|+|+++++|++++|+||||||||||+++|++.... . ..+++..|.. .+
T Consensus 893 ~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E 972 (1470)
T PLN03140 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRE 972 (1470)
T ss_pred ceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHH
Confidence 3689999999999999999999999999999999975321 0 1133433321 01
Q ss_pred Hh------------h---HHHHHHHHHHHcCCCCCCCCCCC-----CCCChHHHHHHHHHHHHhh------------CCC
Q 044538 83 LL------------T---MEEAVHAKLRKFGLPGHNHLTPI-----ANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 83 ~~------------~---~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.+ . ..+.++++++.+++.+..+ ..+ ..|||||||||+||++++. +||
T Consensus 973 ~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~-~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 973 SLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKD-AIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhC-CccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 00 0 1134677899999976544 333 5899999999999988775 799
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 131 TQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
..+...+++.+++. +.|||+++||++
T Consensus 1052 ~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1052 ARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 99999999888765 579999999986
No 362
>PTZ00243 ABC transporter; Provisional
Probab=99.86 E-value=1.6e-21 Score=178.23 Aligned_cols=127 Identities=23% Similarity=0.270 Sum_probs=87.4
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccch-------hhHhh-----HHHHH
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHL-------EDLLT-----MEEAV 90 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~-------~~~~~-----~~~~~ 90 (158)
+++|+|+||+|++|++++|+||||||||||+++|++.... ...+++.+|.. .+... ..++.
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~ 752 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARL 752 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHH
Confidence 4589999999999999999999999999999999975422 12355554431 11110 01112
Q ss_pred H---------HHHHHc--CCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH--hhc-
Q 044538 91 H---------AKLRKF--GLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL--DEF- 144 (158)
Q Consensus 91 ~---------~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l--~~~- 144 (158)
. +.++.+ |+..... .+..+||||||||++||||+.. +||+.....+++.+ ...
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~ 831 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALA 831 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhC
Confidence 2 233334 4443333 4568999999999999999775 69998887776532 222
Q ss_pred CCeEEEEeecCCC
Q 044538 145 AGGVVLVSHDSRL 157 (158)
Q Consensus 145 ~~tvi~vtHd~~~ 157 (158)
+.|+|++|||+++
T Consensus 832 ~~TvIlvTH~~~~ 844 (1560)
T PTZ00243 832 GKTRVLATHQVHV 844 (1560)
T ss_pred CCEEEEEeCCHHH
Confidence 4799999999754
No 363
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.86 E-value=8e-22 Score=155.61 Aligned_cols=109 Identities=26% Similarity=0.328 Sum_probs=79.3
Q ss_pred EECCCCCCcchHHHHHHhhhhc------------------ceeeeccccch--------hhHhh------------HHHH
Q 044538 48 IVGPNDTGKSPLPNLLAVRRRQ------------------KLRIGRHSRHL--------EDLLT------------MEEA 89 (158)
Q Consensus 48 liG~nGsGKSTLl~~i~~~~~~------------------~~~~~~~~~~~--------~~~~~------------~~~~ 89 (158)
|+||||||||||+++|++.... ...+++.++.. .+.+. ..++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 5899999999999999964321 01234333321 11110 1235
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEee
Q 044538 90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSH 153 (158)
Q Consensus 90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtH 153 (158)
+.++++.+++.+..+ +++.+|||||||||+||++++. +||+..+..+.+.+++. +.|+|+|||
T Consensus 81 ~~~~l~~~~l~~~~~-~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFAD-RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhc-CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 677899999987554 5679999999999999998775 69999999998888653 579999999
Q ss_pred cCCC
Q 044538 154 DSRL 157 (158)
Q Consensus 154 d~~~ 157 (158)
|+++
T Consensus 160 d~~e 163 (325)
T TIGR01187 160 DQEE 163 (325)
T ss_pred CHHH
Confidence 9754
No 364
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.3e-22 Score=159.67 Aligned_cols=147 Identities=38% Similarity=0.563 Sum_probs=118.6
Q ss_pred CchhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh---------cceeeeccccchh
Q 044538 11 TSPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR---------QKLRIGRHSRHLE 81 (158)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~---------~~~~~~~~~~~~~ 81 (158)
..|.+.+.++ +|.|..+..+.+.++++++..-..++++|+||+||||+++++.+... .+.++++..|+-.
T Consensus 359 ~~p~l~i~~V-~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 359 SPPNLRISYV-AFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV 437 (582)
T ss_pred CCCeeEEEee-eccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence 3456777776 88887655357899999999999999999999999999999986322 3445666655433
Q ss_pred hHhh----------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHH
Q 044538 82 DLLT----------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQS 133 (158)
Q Consensus 82 ~~~~----------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~ 133 (158)
+.+. .++++++.+..||++.....+++..||||||-||++|+..+. +||.++
T Consensus 438 d~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 2221 246788899999999877777788999999999999876553 799999
Q ss_pred HHHHHHHHhhcCCeEEEEeecCCCC
Q 044538 134 IVAVAVTLDEFAGGVVLVSHDSRLI 158 (158)
Q Consensus 134 ~~~l~~~l~~~~~tvi~vtHd~~~~ 158 (158)
...+.+.|+.+.++||+||||.+|+
T Consensus 518 l~AL~~Al~~F~GGVv~VSHd~~fi 542 (582)
T KOG0062|consen 518 LGALAKALKNFNGGVVLVSHDEEFI 542 (582)
T ss_pred HHHHHHHHHhcCCcEEEEECcHHHH
Confidence 9999999999999999999998763
No 365
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.85 E-value=3.9e-21 Score=147.18 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEE
Q 044538 89 AVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVL 150 (158)
Q Consensus 89 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~ 150 (158)
+..++++.+|+......+++.+|||||+||++||++++. +||+.....+.+.++++ +.|+|+
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 345678889997633346779999999999999988764 48999999888887664 579999
Q ss_pred EeecCCC
Q 044538 151 VSHDSRL 157 (158)
Q Consensus 151 vtHd~~~ 157 (158)
||||+++
T Consensus 228 itH~~~~ 234 (261)
T cd03271 228 IEHNLDV 234 (261)
T ss_pred EeCCHHH
Confidence 9999864
No 366
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.85 E-value=2e-21 Score=177.19 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=85.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce----eeeccccch-------hhHhh-----HHHHHH
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----RIGRHSRHL-------EDLLT-----MEEAVH 91 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----~~~~~~~~~-------~~~~~-----~~~~~~ 91 (158)
++|+|+||+|++|++++|+||||||||||+++|++.... .+ .+++.+|.. .++.. ..++..
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~ 519 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYT 519 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHH
Confidence 579999999999999999999999999999999975421 11 245544431 11110 011122
Q ss_pred HHHHHcCCC---------C--CCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHH-Hhhc--C
Q 044538 92 AKLRKFGLP---------G--HNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVT-LDEF--A 145 (158)
Q Consensus 92 ~~l~~~~l~---------~--~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~-l~~~--~ 145 (158)
++++..++. + ... .+..+||||||||++||||+.. +||+.....+.+. +.+. +
T Consensus 520 ~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~ 598 (1490)
T TIGR01271 520 SVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598 (1490)
T ss_pred HHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 222222221 1 111 2357899999999999999765 6999999998874 4443 5
Q ss_pred CeEEEEeecCCC
Q 044538 146 GGVVLVSHDSRL 157 (158)
Q Consensus 146 ~tvi~vtHd~~~ 157 (158)
.|+|+||||++.
T Consensus 599 ~tvilvtH~~~~ 610 (1490)
T TIGR01271 599 KTRILVTSKLEH 610 (1490)
T ss_pred CeEEEEeCChHH
Confidence 799999999764
No 367
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.85 E-value=8.8e-21 Score=172.03 Aligned_cols=126 Identities=17% Similarity=0.177 Sum_probs=91.8
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-------cc----------------eeeeccccch------
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-------QK----------------LRIGRHSRHL------ 80 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-------~~----------------~~~~~~~~~~------ 80 (158)
+.+|+|+|+++++||+++|+||||||||||+|+|++... .. ..+++..|..
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 468999999999999999999999999999999997521 00 0133333220
Q ss_pred --hhHh----------------hHH---HH-HHHHHHHcCCCCCCCC----CCCCCCChHHHHHHHHHHHHhh-------
Q 044538 81 --EDLL----------------TME---EA-VHAKLRKFGLPGHNHL----TPIANLSGGQKVRVMFTLVSMY------- 127 (158)
Q Consensus 81 --~~~~----------------~~~---~~-~~~~l~~~~l~~~~~~----~~~~~LSgGqkqrv~ia~~~l~------- 127 (158)
.+.+ ... ++ ++.+++.+|+.+..+. ..+..|||||||||+||++++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 0000 011 12 2457888999764432 2346799999999999988775
Q ss_pred -----CCCHHHHHHHHHHHhhc----CCeEEEEeecC
Q 044538 128 -----HLDTQSIVAVAVTLDEF----AGGVVLVSHDS 155 (158)
Q Consensus 128 -----~lD~~~~~~l~~~l~~~----~~tvi~vtHd~ 155 (158)
+||..+...+.+.|++. +.|+|+++|+.
T Consensus 234 DEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~ 270 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRALKTSANILDTTPLVAIYQC 270 (1394)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 79999999999888764 46899999996
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.85 E-value=3.8e-21 Score=133.57 Aligned_cols=97 Identities=35% Similarity=0.439 Sum_probs=68.6
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---e-----------------eeeccccc--hhhHh-----h
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---L-----------------RIGRHSRH--LEDLL-----T 85 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~-----------------~~~~~~~~--~~~~~-----~ 85 (158)
|+|+||+|++|++++|+|+||||||||+++|++..... + .+++.++. +.... .
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999754321 1 12222222 11111 2
Q ss_pred HHHHHHHHHHHcCCCCCCC---CCCCCCCChHHHHHHHHHHHHhhCC
Q 044538 86 MEEAVHAKLRKFGLPGHNH---LTPIANLSGGQKVRVMFTLVSMYHL 129 (158)
Q Consensus 86 ~~~~~~~~l~~~~l~~~~~---~~~~~~LSgGqkqrv~ia~~~l~~l 129 (158)
..+++.++++.+++..... .++...||+|||||++||++++.+.
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~ 127 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNP 127 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCC
Confidence 2356778888888765322 1234899999999999999887653
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.85 E-value=2.8e-21 Score=175.40 Aligned_cols=126 Identities=21% Similarity=0.201 Sum_probs=91.9
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccch--------h
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRHL--------E 81 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~~--------~ 81 (158)
..+|+|+|+.+++|++++|+||||||||||+++|++..... ..+++..|.. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999753211 1233333320 0
Q ss_pred hHhh-------------------HHH---------------------------HHHHHHHHcCCCCCCC----CCCCCCC
Q 044538 82 DLLT-------------------MEE---------------------------AVHAKLRKFGLPGHNH----LTPIANL 111 (158)
Q Consensus 82 ~~~~-------------------~~~---------------------------~~~~~l~~~~l~~~~~----~~~~~~L 111 (158)
+.+. ..+ .++.+++.+|+++..+ +..+..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 0000 000 1345788899975331 2356789
Q ss_pred ChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhhc----CCeEEEEeecC
Q 044538 112 SGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDS 155 (158)
Q Consensus 112 SgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~ 155 (158)
||||||||+||++++. +||..+..++.+.|++. +.|+|+++|+.
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp 397 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQP 397 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence 9999999999988764 79999999999988765 46999999985
No 370
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=5.3e-21 Score=155.49 Aligned_cols=140 Identities=24% Similarity=0.361 Sum_probs=101.0
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ceeeecccc--------------
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLRIGRHSR-------------- 78 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~~~~~~~-------------- 78 (158)
.+.++ ++.|.+ ..+++|++|++.+|+.+||+|+|||||||+++++.+...+ ++.+....+
T Consensus 77 k~~sl-s~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~ 153 (614)
T KOG0927|consen 77 KIESL-SLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV 153 (614)
T ss_pred eeeee-eeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence 34444 666654 4579999999999999999999999999999999864321 100000000
Q ss_pred -----------chhhH-------------------------hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH
Q 044538 79 -----------HLEDL-------------------------LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 79 -----------~~~~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia 122 (158)
...+. -+.+.++..++..+|+......+.+..||||++.|+++|
T Consensus 154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA 233 (614)
T KOG0927|consen 154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA 233 (614)
T ss_pred hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence 00000 001233445666677766666677889999999999999
Q ss_pred HHHhh------------CCCHHHHHHHHHHHhhcCC-eEEEEeecCCCC
Q 044538 123 LVSMY------------HLDTQSIVAVAVTLDEFAG-GVVLVSHDSRLI 158 (158)
Q Consensus 123 ~~~l~------------~lD~~~~~~l~~~l~~~~~-tvi~vtHd~~~~ 158 (158)
++++. |||.+++.++.+.|.++.. ++|+++|+.+++
T Consensus 234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfl 282 (614)
T KOG0927|consen 234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFL 282 (614)
T ss_pred HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhh
Confidence 99764 8999999999999999987 899999998763
No 371
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.84 E-value=3.7e-21 Score=168.34 Aligned_cols=135 Identities=21% Similarity=0.335 Sum_probs=105.7
Q ss_pred eeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccc
Q 044538 21 ISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRH 79 (158)
Q Consensus 21 ~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~ 79 (158)
+++.|+.... +++++||.|++||+.|+.|+|||||||+++++.|.... ...+||.+|.
T Consensus 570 L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~ 648 (885)
T KOG0059|consen 570 LSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF 648 (885)
T ss_pred eeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCch
Confidence 3777876544 89999999999999999999999999999999864321 1125665553
Q ss_pred h--hhHhh------------------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------
Q 044538 80 L--EDLLT------------------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------ 127 (158)
Q Consensus 80 ~--~~~~~------------------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------ 127 (158)
. .+.++ ..+.++..++.+++.+... ++++.+|||+|+|+++|.|++.
T Consensus 649 d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-~~~~~ySgG~kRkLs~aialig~p~vi~LDEPst 727 (885)
T KOG0059|consen 649 DALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-KQVRTYSGGNKRRLSFAIALIGDPSVILLDEPST 727 (885)
T ss_pred hhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-cchhhCCCcchhhHHHHHHHhcCCCEEEecCCCC
Confidence 1 11111 2345778899999988766 5789999999999999988765
Q ss_pred CCCHHHHHHHHHHHhhcC---CeEEEEeecCCC
Q 044538 128 HLDTQSIVAVAVTLDEFA---GGVVLVSHDSRL 157 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~~---~tvi~vtHd~~~ 157 (158)
++||.+++.+++.+++.. .++|++||.+++
T Consensus 728 GmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE 760 (885)
T KOG0059|consen 728 GLDPKARRHLWDIIARLRKNGKAIILTSHSMEE 760 (885)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 699999999999987653 399999999875
No 372
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=3e-20 Score=165.44 Aligned_cols=144 Identities=22% Similarity=0.269 Sum_probs=100.0
Q ss_pred hhhhhheeeeEEcCC-CCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccchh---
Q 044538 13 PMLQLIEVISFSYPN-LQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHLE--- 81 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~-~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~~--- 81 (158)
+.+.+.+. +++.+. ...+.|+||||+|++|+.+||+||-|||||+|+.+|.|.-.. +..++|.+|...
T Consensus 517 ~~i~i~~~-sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 517 NAIEIKNG-SFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN 595 (1381)
T ss_pred ceEEEeee-eEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC
Confidence 34555565 777765 334589999999999999999999999999999999875321 223566665421
Q ss_pred ----hHh-----hHHHHHHHHHHHcCCCCCCCC----------CCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 82 ----DLL-----TMEEAVHAKLRKFGLPGHNHL----------TPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 82 ----~~~-----~~~~~~~~~l~~~~l~~~~~~----------~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
++. -.+++.++.++...|..+... .+.-+||||||||+++|||.-. .+|
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 110 123566667766665432211 1335899999999999998654 578
Q ss_pred HHHHHHHHHHHh-hc--CCeEEEEeecCCC
Q 044538 131 TQSIVAVAVTLD-EF--AGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~~l~-~~--~~tvi~vtHd~~~ 157 (158)
.+.-..+.+..- .. ++|+|+|||.+++
T Consensus 676 ahvg~~if~~ci~~~L~~KT~ILVTHql~~ 705 (1381)
T KOG0054|consen 676 AHVGKHIFEECIRGLLRGKTVILVTHQLQF 705 (1381)
T ss_pred HhhhHHHHHHHHHhhhcCCEEEEEeCchhh
Confidence 888777776543 22 3799999998765
No 373
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=1.2e-19 Score=153.32 Aligned_cols=127 Identities=29% Similarity=0.333 Sum_probs=96.0
Q ss_pred CCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccc--hhhHh--
Q 044538 29 QDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRH--LEDLL-- 84 (158)
Q Consensus 29 ~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~--~~~~~-- 84 (158)
.+.+|++||.++++||++||+||+|||||||+++++++.... ...++..|+ +.+.+
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 357899999999999999999999999999999999754321 113333332 11111
Q ss_pred -------------------hHHHHHHHHHHHcCCCCCCCCCCCC-----CCChHHHHHHHHHHHHhh------------C
Q 044538 85 -------------------TMEEAVHAKLRKFGLPGHNHLTPIA-----NLSGGQKVRVMFTLVSMY------------H 128 (158)
Q Consensus 85 -------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGqkqrv~ia~~~l~------------~ 128 (158)
...++++++++.+|+..-. +..++ .+|||||+||+||.-++. +
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~-~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCA-DTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhc-cceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1246788999999998533 34444 599999999999877664 6
Q ss_pred CCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 129 LDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 129 lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
||..+...+++.|+++ +.|||++=|++.
T Consensus 201 LDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs 231 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARSGRTVICTIHQPS 231 (613)
T ss_pred cchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence 9999998888888765 579999999864
No 374
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.82 E-value=5.6e-20 Score=152.80 Aligned_cols=141 Identities=23% Similarity=0.258 Sum_probs=103.5
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce------eeeccccch---
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL------RIGRHSRHL--- 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~------~~~~~~~~~--- 80 (158)
..+.+.|+ ++.-+.+. ..+++.||++++|+.+.|.||||||||||+|+|+|..+. ++ ..-+.+|.+
T Consensus 391 ~~i~~~nl-~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p 468 (604)
T COG4178 391 HGITLENL-SLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLP 468 (604)
T ss_pred ceeEEeee-eEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCC
Confidence 45666666 77777665 579999999999999999999999999999999975431 10 011122211
Q ss_pred ----hhHh--------hHHHHHHHHHHHcCCCCCCC------CCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 81 ----EDLL--------TMEEAVHAKLRKFGLPGHNH------LTPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 81 ----~~~~--------~~~~~~~~~l~~~~l~~~~~------~~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
.+.+ -.++.+.+.|.++||.+... ++. ..||+|||||+++||.++. +||
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~-~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD-RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHh-hhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 0000 12466778888888864211 122 5799999999999988775 699
Q ss_pred HHHHHHHHHHHhh--cCCeEEEEeecCC
Q 044538 131 TQSIVAVAVTLDE--FAGGVVLVSHDSR 156 (158)
Q Consensus 131 ~~~~~~l~~~l~~--~~~tvi~vtHd~~ 156 (158)
+++...+.+.+++ ...|||-|+|...
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~t 575 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPT 575 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchh
Confidence 9999999999988 5689999999754
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.82 E-value=6.5e-20 Score=136.81 Aligned_cols=123 Identities=20% Similarity=0.212 Sum_probs=78.7
Q ss_pred eeeeEEee-CCCEEEEECCCCCCcchHHHHHHhh----hhcc----------------eeeeccccchhh--------Hh
Q 044538 34 SNVDMGID-MGTCVAIVGPNDTGKSPLPNLLAVR----RRQK----------------LRIGRHSRHLED--------LL 84 (158)
Q Consensus 34 ~~isl~i~-~G~~~~liG~nGsGKSTLl~~i~~~----~~~~----------------~~~~~~~~~~~~--------~~ 84 (158)
.+++|+.. +|++++|+||||||||||+++|+.. .... ..++..++.... .+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 46677654 5899999999999999999999731 1000 011111111000 01
Q ss_pred hHHHHHHH-HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----------------------hCCCHHHHHHHHHHH
Q 044538 85 TMEEAVHA-KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----------------------YHLDTQSIVAVAVTL 141 (158)
Q Consensus 85 ~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----------------------~~lD~~~~~~l~~~l 141 (158)
...+..+. .+...++..... +++.+||+||+||+++|++++ .++|+.....+.+.+
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~-~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLA-RPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhc-CCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 11111111 233344444433 567899999999999998874 168999988888877
Q ss_pred hhc---CCeEEEEeecCCC
Q 044538 142 DEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 142 ~~~---~~tvi~vtHd~~~ 157 (158)
+++ +.|+|+||||+++
T Consensus 177 ~~~~~~~~tii~itH~~~~ 195 (213)
T cd03279 177 ELIRTENRMVGVISHVEEL 195 (213)
T ss_pred HHHHhCCCEEEEEECchHH
Confidence 665 4699999999864
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.81 E-value=2e-19 Score=142.22 Aligned_cols=140 Identities=24% Similarity=0.325 Sum_probs=93.7
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeeeccc---cc---------
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIGRHS---RH--------- 79 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~~~~---~~--------- 79 (158)
+++.++ .|.|.... .-+.+||++|++||++.|+|.|||||||+++++.|..++. +.....+ ..
T Consensus 323 lelrnv-rfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfS 400 (546)
T COG4615 323 LELRNV-RFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFS 400 (546)
T ss_pred eeeeee-eeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHH
Confidence 555555 77776543 4689999999999999999999999999999999764331 1111000 00
Q ss_pred -------hhhH-h-----hHHHHHHHHHHHcCCCCCCC--CC--CCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 80 -------LEDL-L-----TMEEAVHAKLRKFGLPGHNH--LT--PIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 80 -------~~~~-~-----~~~~~~~~~l~~~~l~~~~~--~~--~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
+++. + ...+.+..+++++.+..... +. ..-.||-|||+|+++..|++. +-|
T Consensus 401 avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQD 480 (546)
T COG4615 401 AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQD 480 (546)
T ss_pred HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCC
Confidence 0000 0 11255666777766543211 11 125799999999999766653 578
Q ss_pred HHHHHHHHHH----HhhcCCeEEEEeecCC
Q 044538 131 TQSIVAVAVT----LDEFAGGVVLVSHDSR 156 (158)
Q Consensus 131 ~~~~~~l~~~----l~~~~~tvi~vtHd~~ 156 (158)
|.-++++.+. +++.++||+.||||-.
T Consensus 481 PaFRR~FY~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 481 PAFRREFYQVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred hHHHHHHHHHHhHHHHHhCCeEEEEecCch
Confidence 8887776654 5788999999999953
No 377
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.81 E-value=1.3e-20 Score=134.83 Aligned_cols=123 Identities=25% Similarity=0.265 Sum_probs=86.7
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceee--e-----------------ccccc--------hhhH--
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRI--G-----------------RHSRH--------LEDL-- 83 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~--~-----------------~~~~~--------~~~~-- 83 (158)
|-.+|.++..||++-++||||||||||+-.+++.......+ + |..+. .+.+
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 66899999999999999999999999999888643221111 1 00000 0111
Q ss_pred -----hhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh-------------------CCCHHHHHHHHH
Q 044538 84 -----LTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY-------------------HLDTQSIVAVAV 139 (158)
Q Consensus 84 -----~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~-------------------~lD~~~~~~l~~ 139 (158)
.+....+.++...++++++.. +.+++|||||-|||-+|+..+. .||......+..
T Consensus 95 L~qP~~~~a~~i~~i~~~L~l~DKL~-Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdr 173 (248)
T COG4138 95 LHQPDKTRTELLNDVAGALALDDKLG-RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDR 173 (248)
T ss_pred hcCchHHHHHHHHHHHhhhcccchhh-hhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHH
Confidence 122355677788899988776 5679999999999999754332 478766665555
Q ss_pred HHhh---cCCeEEEEeecCC
Q 044538 140 TLDE---FAGGVVLVSHDSR 156 (158)
Q Consensus 140 ~l~~---~~~tvi~vtHd~~ 156 (158)
.+.+ .+.+|||++||++
T Consensus 174 ll~~~c~~G~~vims~HDLN 193 (248)
T COG4138 174 LLSALCQQGLAIVMSSHDLN 193 (248)
T ss_pred HHHHHHhCCcEEEEeccchh
Confidence 5544 4679999999986
No 378
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.79 E-value=7.8e-19 Score=133.05 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=78.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh------------hc-----c--------ee-------------
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR------------RQ-----K--------LR------------- 72 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~------------~~-----~--------~~------------- 72 (158)
.++++++ |++++|+||||||||||+++|++.. .. . ..
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~~ 90 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPID 90 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCCC
Confidence 3567776 7899999999999999999997320 00 0 00
Q ss_pred ---------eeccccc--hhhHhhHHHHHHHHHHHcCCCCC-------------------CCCCCCCCCChHHHHHHHHH
Q 044538 73 ---------IGRHSRH--LEDLLTMEEAVHAKLRKFGLPGH-------------------NHLTPIANLSGGQKVRVMFT 122 (158)
Q Consensus 73 ---------~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~-------------------~~~~~~~~LSgGqkqrv~ia 122 (158)
+++.++. +.+.....+++...++.+++... ....++.+||||||||++||
T Consensus 91 ~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la 170 (243)
T cd03272 91 KEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALA 170 (243)
T ss_pred CCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHH
Confidence 0000000 00000112455667777776431 11245689999999999999
Q ss_pred HHHh----h------------CCCHHHHHHHHHHHhhc--CCeEEEEeecC
Q 044538 123 LVSM----Y------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDS 155 (158)
Q Consensus 123 ~~~l----~------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~ 155 (158)
++++ . +||+.....+++.++++ +.++|++||+.
T Consensus 171 ~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~ 221 (243)
T cd03272 171 LIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRP 221 (243)
T ss_pred HHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 8874 1 59999999999998876 35778888874
No 379
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.79 E-value=1.2e-18 Score=128.65 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=80.3
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccc--hhh-Hh--hHH
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRH--LED-LL--TME 87 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~--~~~-~~--~~~ 87 (158)
++++++++.+| +.+|+||||||||||+..|....... ..+....+. ..+ .. ...
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 90 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQ 90 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHH
Confidence 56788888887 88999999999999999886321100 001111110 011 01 112
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc-----C-
Q 044538 88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF-----A- 145 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~-----~- 145 (158)
+.+.++++. .... .+++.+||+|||||++||+++. . ++|......+.+.+.+. +
T Consensus 91 ~~~~~~l~~---~~~~-~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~ 166 (198)
T cd03276 91 DMARSFLTS---NKAA-VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGR 166 (198)
T ss_pred HHHHHHhcc---cccc-CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCc
Confidence 455566655 3333 3577999999999999988763 2 69999988888877653 2
Q ss_pred CeEEEEeecCCCC
Q 044538 146 GGVVLVSHDSRLI 158 (158)
Q Consensus 146 ~tvi~vtHd~~~~ 158 (158)
.+||++||+++.+
T Consensus 167 ~~iii~th~~~~i 179 (198)
T cd03276 167 QFIFITPQDISGL 179 (198)
T ss_pred EEEEEECCccccc
Confidence 4799999998764
No 380
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.7e-19 Score=140.82 Aligned_cols=140 Identities=28% Similarity=0.325 Sum_probs=93.0
Q ss_pred hhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc--------------------ceeeec
Q 044538 16 QLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ--------------------KLRIGR 75 (158)
Q Consensus 16 ~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~--------------------~~~~~~ 75 (158)
.+.++ +|.|... +++|+++||++++|+.++++||+|+||||+++++...... +..+|.
T Consensus 264 ~F~~V-~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 264 AFINV-SFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred EEEEE-Eeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 34454 8888765 4689999999999999999999999999999998621110 112444
Q ss_pred cccch--h-hHh----------hHHHHHHHHHHHcCCCCC------CCCC----CCCCCChHHHHHHHHHHHHhh-----
Q 044538 76 HSRHL--E-DLL----------TMEEAVHAKLRKFGLPGH------NHLT----PIANLSGGQKVRVMFTLVSMY----- 127 (158)
Q Consensus 76 ~~~~~--~-~~~----------~~~~~~~~~l~~~~l~~~------~~~~----~~~~LSgGqkqrv~ia~~~l~----- 127 (158)
.+|+. + +.. ...+++..+.+...+.+. ..+. +.-.|||||||||+|||.++.
T Consensus 342 VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il 421 (497)
T COG5265 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPIL 421 (497)
T ss_pred CcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEE
Confidence 44431 1 100 001333333333322211 1111 224799999999999998775
Q ss_pred -------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 -------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 -------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
.||....+++...|++. +.|.++|.|.+.-
T Consensus 422 ~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst 460 (497)
T COG5265 422 ILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST 460 (497)
T ss_pred EEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh
Confidence 58999999999999876 4689999998753
No 381
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.79 E-value=3e-19 Score=143.25 Aligned_cols=133 Identities=24% Similarity=0.401 Sum_probs=91.0
Q ss_pred EEcCCCCCcceeeeeEEe-----eCCCEEEEECCCCCCcchHHHHHHhhhh------cceeeeccccchhhHh--hHH--
Q 044538 23 FSYPNLQDIRLSNVDMGI-----DMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKLRIGRHSRHLEDLL--TME-- 87 (158)
Q Consensus 23 ~~~~~~~~~~l~~isl~i-----~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~~~~~~~~~~~~~~--~~~-- 87 (158)
+.|+.-.+ .+.++.|++ ..||+++++||||-||||+.++|+|... ....++|.+|+..... ++.
T Consensus 343 v~y~~~~k-~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~ 421 (591)
T COG1245 343 VEYPDLKK-TYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDL 421 (591)
T ss_pred eecchhee-ecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHH
Confidence 44544322 355666665 5567899999999999999999997543 2355677666543211 111
Q ss_pred ------------HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHhh
Q 044538 88 ------------EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLDE 143 (158)
Q Consensus 88 ------------~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~~ 143 (158)
.--.++++-++++.... +++.+|||||.|||+||+++.. +||.+.+..+.+.+++
T Consensus 422 l~~~~~~~~~~s~~~~ei~~pl~l~~i~e-~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 422 LRSAIRSAFGSSYFKTEIVKPLNLEDLLE-RPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred HHHhhhhhcccchhHHhhcCccchHHHHh-cccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 11234556677766544 6889999999999999877654 6888877666665554
Q ss_pred c----CCeEEEEeecCCC
Q 044538 144 F----AGGVVLVSHDSRL 157 (158)
Q Consensus 144 ~----~~tvi~vtHd~~~ 157 (158)
+ ..|.++|.||+.+
T Consensus 501 ~~e~~~kta~vVdHDi~~ 518 (591)
T COG1245 501 FIENNEKTALVVDHDIYM 518 (591)
T ss_pred HHhhcCceEEEEecceeh
Confidence 3 5799999999754
No 382
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.78 E-value=2.2e-18 Score=141.24 Aligned_cols=141 Identities=21% Similarity=0.212 Sum_probs=99.0
Q ss_pred hhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---c---------eeeeccccch
Q 044538 13 PMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---K---------LRIGRHSRHL 80 (158)
Q Consensus 13 ~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~---------~~~~~~~~~~ 80 (158)
+++++.++ ++.-++....+++++||+|++|+.+.|+||||||||+|+|++++.+.. . ..+-+.+|.+
T Consensus 432 n~i~~e~v-~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 432 NAIEFEEV-SLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred ceEEeeee-eecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 46777776 777777444577899999999999999999999999999999975431 0 0112222221
Q ss_pred ------------hhH--------hhHHHHHHHHHHHcCCCCC-----------CCCCCCCCCChHHHHHHHHHHHHhh--
Q 044538 81 ------------EDL--------LTMEEAVHAKLRKFGLPGH-----------NHLTPIANLSGGQKVRVMFTLVSMY-- 127 (158)
Q Consensus 81 ------------~~~--------~~~~~~~~~~l~~~~l~~~-----------~~~~~~~~LSgGqkqrv~ia~~~l~-- 127 (158)
.+. ...++.+.+.|+.+++.+. ..++ ...||+||+||+++||....
T Consensus 511 Ymt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW-~dvLS~GEqQRLa~ARLfy~kP 589 (659)
T KOG0060|consen 511 YMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDW-MDVLSPGEQQRLAFARLFYHKP 589 (659)
T ss_pred CccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccH-HhhcCHHHHHHHHHHHHHhcCC
Confidence 010 0012455556665544321 1222 36899999999999876553
Q ss_pred ----------CCCHHHHHHHHHHHhhcCCeEEEEeecC
Q 044538 128 ----------HLDTQSIVAVAVTLDEFAGGVVLVSHDS 155 (158)
Q Consensus 128 ----------~lD~~~~~~l~~~l~~~~~tvi~vtHd~ 155 (158)
++|.+....+.+.+++.+.|.|-|+|..
T Consensus 590 k~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRk 627 (659)
T KOG0060|consen 590 KFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRK 627 (659)
T ss_pred ceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHH
Confidence 5778888899999999999999999974
No 383
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.77 E-value=2.1e-18 Score=153.84 Aligned_cols=142 Identities=19% Similarity=0.204 Sum_probs=100.9
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh--------------------cceee
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR--------------------QKLRI 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~--------------------~~~~~ 73 (158)
-+++.++ +++|..+..++|++|||+|++||.+||+|..|||||||..++-.... -+.++
T Consensus 1138 ~I~f~~~-~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1138 EIEFEDL-SLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred eEEEEEe-EEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 4677776 99998776789999999999999999999999999999888752110 01122
Q ss_pred eccccch-------------hhHhhHHHHHHHHHHHcCCCCC-------CC---CCCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL-------------EDLLTMEEAVHAKLRKFGLPGH-------NH---LTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~-------------~~~~~~~~~~~~~l~~~~l~~~-------~~---~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
+..+|++ .+..+ ++++.++|+...+.+. .+ .....++|-||||.+|+|||++.
T Consensus 1217 sIIPQdPvLFsGTvR~NLDPf~e~s-D~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSGTVRFNLDPFDEYS-DDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSK 1295 (1381)
T ss_pred eeeCCCCceecCccccccCcccccC-HHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCC
Confidence 2233321 11111 3556666665544221 11 11236899999999999999886
Q ss_pred ---------CCCHHHHHHHHHHHhhc--CCeEEEEeecCCC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSRL 157 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~~ 157 (158)
++|+++-..+.+.+++. .+|||.|-|+++-
T Consensus 1296 ILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~T 1336 (1381)
T KOG0054|consen 1296 ILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNT 1336 (1381)
T ss_pred EEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccch
Confidence 58999988899999763 4799999999864
No 384
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.77 E-value=1.4e-18 Score=127.30 Aligned_cols=137 Identities=16% Similarity=0.220 Sum_probs=96.5
Q ss_pred hhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---cee-----------------e
Q 044538 14 MLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KLR-----------------I 73 (158)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~~-----------------~ 73 (158)
.+++.+. .|+|+... +++-|+|++++.|....++|.||||||||+++++|.... .++ .
T Consensus 13 aievsgl-~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 13 AIEVSGL-QFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred eEEEecc-EEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4566666 89998655 689999999999999999999999999999999864210 000 0
Q ss_pred eccccch------------hhHhhH-----------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---
Q 044538 74 GRHSRHL------------EDLLTM-----------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--- 127 (158)
Q Consensus 74 ~~~~~~~------------~~~~~~-----------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--- 127 (158)
.|....+ ...+.. .++-+++++.++++- +++.+.+|-|||+||.|++-++.
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl---~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDL---RWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccc---eEEEeeccccchhhhHHHHhccccee
Confidence 0100000 000000 144556677777653 24678999999999999766553
Q ss_pred ---------CCCHHHHHHHHHHHhhc----CCeEEEEeecC
Q 044538 128 ---------HLDTQSIVAVAVTLDEF----AGGVVLVSHDS 155 (158)
Q Consensus 128 ---------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~ 155 (158)
+||.-++..+++.+++. +.||++.||-.
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF 208 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF 208 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec
Confidence 68999999999998653 57999999954
No 385
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.76 E-value=7.5e-19 Score=131.08 Aligned_cols=121 Identities=22% Similarity=0.323 Sum_probs=79.8
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh------cceeeeccccc---------------hhh-----H
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR------QKLRIGRHSRH---------------LED-----L 83 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~------~~~~~~~~~~~---------------~~~-----~ 83 (158)
..+++++++ ++++|+|||||||||++++|..... ....+++..+. +.. .
T Consensus 17 ~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (212)
T cd03274 17 EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPL 91 (212)
T ss_pred CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHH
Confidence 347888887 8999999999999999999872100 00011111100 000 0
Q ss_pred h-----hHHH-H----HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHH
Q 044538 84 L-----TMEE-A----VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAV 137 (158)
Q Consensus 84 ~-----~~~~-~----~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l 137 (158)
+ ...+ . ..++++.+++++..+ +++..||+|||||++||+++.. ++|+.+...+
T Consensus 92 l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~-~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l 170 (212)
T cd03274 92 LKSKGIDLDHNRFLILQGEVEQIAQMPKKSW-KNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIV 170 (212)
T ss_pred HHHCCcCCCCCceEEcCCcEEEeeccccccc-cchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHH
Confidence 0 0000 0 134446667765444 4568999999999999987631 5899999999
Q ss_pred HHHHhhcC--CeEEEEeecCC
Q 044538 138 AVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 138 ~~~l~~~~--~tvi~vtHd~~ 156 (158)
.+.++++. .++|++||+.+
T Consensus 171 ~~~l~~~~~~~~~iivs~~~~ 191 (212)
T cd03274 171 ANYIKERTKNAQFIVISLRNN 191 (212)
T ss_pred HHHHHHHcCCCEEEEEECcHH
Confidence 99998874 58999999853
No 386
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.74 E-value=4.5e-18 Score=136.54 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=88.2
Q ss_pred eEEcCCCCCcceeeeeE-EeeCCCEEEEECCCCCCcchHHHHHHhhhhcceee---------------------------
Q 044538 22 SFSYPNLQDIRLSNVDM-GIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRI--------------------------- 73 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl-~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~--------------------------- 73 (158)
..+|+.+. ++=..+ ...+|+++||+||||-||||.+++++|...+++.-
T Consensus 81 vHRYg~Ng---FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 81 VHRYGVNG---FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred eeeccCCc---eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 66676432 222222 24789999999999999999999999754433210
Q ss_pred ------eccccchh-----------hHhhH---HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------
Q 044538 74 ------GRHSRHLE-----------DLLTM---EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------ 127 (158)
Q Consensus 74 ------~~~~~~~~-----------~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------ 127 (158)
...+|+.. +.+.. .-...++.+.+++..... +.+++|||||.||++||++++.
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~-r~v~~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD-RDVSELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhh-hhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence 00011100 00000 023556788889987655 6789999999999999888765
Q ss_pred ------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 ------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
.||...+....+.++++ +.+||+|.||+.
T Consensus 237 FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa 274 (591)
T COG1245 237 FDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA 274 (591)
T ss_pred EcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHH
Confidence 48888777766666665 468999999974
No 387
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.74 E-value=8e-18 Score=124.85 Aligned_cols=119 Identities=20% Similarity=0.169 Sum_probs=69.1
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHH----hhhhc-c----------------eeeeccccch-h------hHhhHH
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLA----VRRRQ-K----------------LRIGRHSRHL-E------DLLTME 87 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~----~~~~~-~----------------~~~~~~~~~~-~------~~~~~~ 87 (158)
.++++.+| +++|+||||||||||+++|. +.... . ..++..++.. . ..++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 45667777 99999999999999999985 22111 0 0111111111 0 001111
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCChHHHHH------HHHHHHHhh------------CCCHHHHH-HHHHHHhhc----
Q 044538 88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVR------VMFTLVSMY------------HLDTQSIV-AVAVTLDEF---- 144 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr------v~ia~~~l~------------~lD~~~~~-~l~~~l~~~---- 144 (158)
+.+... ..-...... ++++.+||+||+|| +++|+++.. +||+.... .+.+.+++.
T Consensus 95 ~~~~~~-~~~~~~~~~-~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~ 172 (204)
T cd03240 95 ENVIFC-HQGESNWPL-LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172 (204)
T ss_pred hceeee-chHHHHHHH-hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc
Confidence 111000 000000011 24568999999997 455555443 69999988 888888664
Q ss_pred CCeEEEEeecCCC
Q 044538 145 AGGVVLVSHDSRL 157 (158)
Q Consensus 145 ~~tvi~vtHd~~~ 157 (158)
+.++|++|||+++
T Consensus 173 ~~~iiiitH~~~~ 185 (204)
T cd03240 173 NFQLIVITHDEEL 185 (204)
T ss_pred CCEEEEEEecHHH
Confidence 4589999999753
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.2e-17 Score=145.82 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=54.3
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEE
Q 044538 90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLV 151 (158)
Q Consensus 90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~v 151 (158)
..++++.+|+......+++.+|||||+||++||++++. +||+.....+++.++++ +.|||++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 34567788887533346779999999999999988763 59999999888888765 5799999
Q ss_pred eecCCC
Q 044538 152 SHDSRL 157 (158)
Q Consensus 152 tHd~~~ 157 (158)
|||+++
T Consensus 888 ~H~~~~ 893 (924)
T TIGR00630 888 EHNLDV 893 (924)
T ss_pred eCCHHH
Confidence 999764
No 389
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=2.2e-18 Score=138.27 Aligned_cols=137 Identities=23% Similarity=0.395 Sum_probs=103.0
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh---hcceeeeccccc-------------------
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR---RQKLRIGRHSRH------------------- 79 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~---~~~~~~~~~~~~------------------- 79 (158)
.|..+...+..+.+-|+.|--|..|+|+||||-|||||++.|+.+. .+++.+-+..+.
T Consensus 269 nF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kR 348 (807)
T KOG0066|consen 269 NFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKR 348 (807)
T ss_pred eeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHH
Confidence 4444444445789999999999999999999999999999997432 111111000000
Q ss_pred ---------------------------hhhHh------hHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 80 ---------------------------LEDLL------TMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 80 ---------------------------~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
..+.+ ..+.+++++|.-+|++.....+|...+|||-|-||++|||+.
T Consensus 349 l~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALf 428 (807)
T KOG0066|consen 349 LALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALF 428 (807)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHh
Confidence 00000 113567788889999887777888999999999999999875
Q ss_pred h------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCCC
Q 044538 127 Y------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRLI 158 (158)
Q Consensus 127 ~------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~~ 158 (158)
. +||.....|+-+.|+.|..|++|||||..|+
T Consensus 429 lEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFL 472 (807)
T KOG0066|consen 429 LEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFL 472 (807)
T ss_pred cCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchH
Confidence 4 7999999999999999999999999998763
No 390
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.73 E-value=1.6e-17 Score=126.79 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCCCC-------------------CCCCCCCCCChHHHHHHHHHHHHh----h------------CCCHH
Q 044538 88 EAVHAKLRKFGLPGH-------------------NHLTPIANLSGGQKVRVMFTLVSM----Y------------HLDTQ 132 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~-------------------~~~~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~ 132 (158)
+++.++++.+++... ..+.++.+||+|||||++||+++. . +||+.
T Consensus 125 ~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~ 204 (251)
T cd03273 125 QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS 204 (251)
T ss_pred HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHH
Confidence 567788999998621 112456899999999999998764 1 58999
Q ss_pred HHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 133 SIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 133 ~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
....+.+.++++ +.++|+|||+.+
T Consensus 205 ~~~~~~~~l~~~~~g~~ii~iSH~~~ 230 (251)
T cd03273 205 HTQNIGRMIKTHFKGSQFIVVSLKEG 230 (251)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 999999988775 468999999854
No 391
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.73 E-value=1.6e-17 Score=132.28 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=90.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeecc-----------------ccchhhHhh--------
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRH-----------------SRHLEDLLT-------- 85 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~-----------------~~~~~~~~~-------- 85 (158)
.+++|+||++++|++++|+|+|||||||+++++.+.......-.|. +....+.+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl 476 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHL 476 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHH
Confidence 5799999999999999999999999999999999754322110110 100000000
Q ss_pred -----HHHHHHHHHHHcCCCCC-CCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHHh----h
Q 044538 86 -----MEEAVHAKLRKFGLPGH-NHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTLD----E 143 (158)
Q Consensus 86 -----~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l~----~ 143 (158)
....+.++++..|+.+. ..+++.++||-|||.|+.||+++.. +||+.+...+...+. +
T Consensus 477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 01235678889998753 3345678999999999999866442 799988877776664 4
Q ss_pred cCCeEEEEeecCCC
Q 044538 144 FAGGVVLVSHDSRL 157 (158)
Q Consensus 144 ~~~tvi~vtHd~~~ 157 (158)
.+.|++++||+.++
T Consensus 557 ~giTlivvThrpEv 570 (593)
T COG2401 557 AGITLIVVTHRPEV 570 (593)
T ss_pred hCCeEEEEecCHHH
Confidence 56799999998764
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.72 E-value=5.9e-17 Score=141.86 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=53.5
Q ss_pred HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhhc---CCeEEEEe
Q 044538 91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDEF---AGGVVLVS 152 (158)
Q Consensus 91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~~---~~tvi~vt 152 (158)
.+.++.+|+......+++.+|||||+||+.||++++. +||+.....+++.++++ +.|||+||
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit 890 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE 890 (943)
T ss_pred HHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567788987533346778999999999999988764 48999998888888665 57999999
Q ss_pred ecCCC
Q 044538 153 HDSRL 157 (158)
Q Consensus 153 Hd~~~ 157 (158)
||+++
T Consensus 891 H~~~~ 895 (943)
T PRK00349 891 HNLDV 895 (943)
T ss_pred cCHHH
Confidence 99764
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.71 E-value=3.8e-17 Score=124.42 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCCCCC---------------------CCCCCCCCChHHHHHHHHHHHHhh----------------CCC
Q 044538 88 EAVHAKLRKFGLPGHN---------------------HLTPIANLSGGQKVRVMFTLVSMY----------------HLD 130 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~~---------------------~~~~~~~LSgGqkqrv~ia~~~l~----------------~lD 130 (158)
+.+.+.++.+|+.... ...++.+||+|||||++||++++. +||
T Consensus 112 ~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD 191 (247)
T cd03275 112 KEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALD 191 (247)
T ss_pred HHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCC
Confidence 4556788888885321 112347999999999999987741 689
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 131 TQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+.....+.+.++++ +.++|+||||.+
T Consensus 192 ~~~~~~l~~~i~~~~~~g~~vi~isH~~~ 220 (247)
T cd03275 192 NTNVGKVASYIREQAGPNFQFIVISLKEE 220 (247)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEECCHH
Confidence 99999888888776 468999999964
No 394
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.70 E-value=9.5e-17 Score=146.46 Aligned_cols=66 Identities=26% Similarity=0.368 Sum_probs=53.3
Q ss_pred HHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh---h------------CCCHHHHHHHHHHHhhc---CCeEEEEee
Q 044538 92 AKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM---Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSH 153 (158)
Q Consensus 92 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l---~------------~lD~~~~~~l~~~l~~~---~~tvi~vtH 153 (158)
++++.+|+......+++.+|||||+||++||++++ . +||+.....+++.++++ +.|||+|||
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsH 870 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870 (1809)
T ss_pred HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 46788899764234677999999999999998886 1 69999999888888654 579999999
Q ss_pred cCCC
Q 044538 154 DSRL 157 (158)
Q Consensus 154 d~~~ 157 (158)
|+++
T Consensus 871 dl~~ 874 (1809)
T PRK00635 871 NMHV 874 (1809)
T ss_pred CHHH
Confidence 9864
No 395
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.69 E-value=1.5e-16 Score=129.77 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=86.8
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------ceeeeccccchh-----------
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------KLRIGRHSRHLE----------- 81 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------~~~~~~~~~~~~----------- 81 (158)
.+--+.++ .++..++|+|++|--+.|+||||||||+|+|++.+.++- ...+-|.+|.+.
T Consensus 488 pvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQII 566 (728)
T KOG0064|consen 488 PVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQII 566 (728)
T ss_pred ceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceee
Confidence 44445544 367899999999999999999999999999999975431 111222222110
Q ss_pred -----hHhh----HHHHHHHHHHHcCCC---------CCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCH
Q 044538 82 -----DLLT----MEEAVHAKLRKFGLP---------GHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDT 131 (158)
Q Consensus 82 -----~~~~----~~~~~~~~l~~~~l~---------~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~ 131 (158)
+.+. .++.....|..+.++ +...++. ..||||||||+++||.... ...+
T Consensus 567 YPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWk-d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsi 645 (728)
T KOG0064|consen 567 YPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWK-DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSI 645 (728)
T ss_pred cCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHH-hhccchHHHHHHHHHHHhcCcchhhhhhhhccccc
Confidence 0110 012333344333322 1122333 6899999999999876543 2334
Q ss_pred HHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 132 QSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 132 ~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
.....+.+..++.+.+.|-|||...
T Consensus 646 dvE~~i~~~ak~~gi~llsithrps 670 (728)
T KOG0064|consen 646 DVEGKIFQAAKDAGISLLSITHRPS 670 (728)
T ss_pred chHHHHHHHHHhcCceEEEeecCcc
Confidence 5567888999999999999999865
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.65 E-value=2.1e-16 Score=116.40 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=94.2
Q ss_pred CCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee----------------------------ccc
Q 044538 26 PNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG----------------------------RHS 77 (158)
Q Consensus 26 ~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~----------------------------~~~ 77 (158)
+.+...+++++|+++.+||+-|++|+||||||-..++|++..++++.+- ..+
T Consensus 16 sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIF 95 (330)
T COG4170 16 SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIF 95 (330)
T ss_pred CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhh
Confidence 4555568999999999999999999999999999999986544332211 111
Q ss_pred cchhh---------------------------Hhh-HHHHHHHHHHHcCCCCCCC--CCCCCCCChHHHHHHHHHHHHhh
Q 044538 78 RHLED---------------------------LLT-MEEAVHAKLRKFGLPGHNH--LTPIANLSGGQKVRVMFTLVSMY 127 (158)
Q Consensus 78 ~~~~~---------------------------~~~-~~~~~~~~l~~~~l~~~~~--~~~~~~LSgGqkqrv~ia~~~l~ 127 (158)
|.... .+. ...++.+++.++|+.+..+ ..++.+|-.||-|+|.||.|+..
T Consensus 96 QeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~An 175 (330)
T COG4170 96 QEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred cCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhcc
Confidence 11000 000 0255678899999976432 23457999999999999877654
Q ss_pred ------------CCCHHHHHHHHHHHhhc----CCeEEEEeecCC
Q 044538 128 ------------HLDTQSIVAVAVTLDEF----AGGVVLVSHDSR 156 (158)
Q Consensus 128 ------------~lD~~~~~~l~~~l~~~----~~tvi~vtHd~~ 156 (158)
.+|+....+++++|... +.||+++|||+.
T Consensus 176 qPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~ 220 (330)
T COG4170 176 QPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ 220 (330)
T ss_pred CCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH
Confidence 47888888888887654 368999999974
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.65 E-value=1.7e-16 Score=117.36 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=73.1
Q ss_pred eeeeeEEeeCCC-EEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538 33 LSNVDMGIDMGT-CVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIAN 110 (158)
Q Consensus 33 l~~isl~i~~G~-~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 110 (158)
+.++||++.+|+ +++|+||||||||||++++....- -...| +.+.. .... ...+.+.+..++..+... ...++
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~-~~~~G~~vp~~--~~~~-~~~~~~~~~~lg~~~~l~-~~~s~ 91 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTL-MAQSGLPIPAA--EGSS-LPVFENIFADIGDEQSIE-QSLST 91 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHH-HHHcCCCcccc--cccc-CcCccEEEEecCchhhhh-cCcch
Confidence 558999999995 799999999999999999872110 00011 00000 0000 000111222334433333 35689
Q ss_pred CChHHHHHHHHHHHHhh-----------CCCHHHHHHHH----HHHhhcCCeEEEEeecCC
Q 044538 111 LSGGQKVRVMFTLVSMY-----------HLDTQSIVAVA----VTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 111 LSgGqkqrv~ia~~~l~-----------~lD~~~~~~l~----~~l~~~~~tvi~vtHd~~ 156 (158)
+|+||+|++.+++++.. ++|+.....+. +.+.+.+.++|++||+.+
T Consensus 92 fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~ 152 (200)
T cd03280 92 FSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGE 152 (200)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHH
Confidence 99999999999765321 68988876664 333444679999999843
No 398
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=1.3e-15 Score=112.99 Aligned_cols=121 Identities=13% Similarity=0.109 Sum_probs=78.3
Q ss_pred CcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeeecc-ccchhhHhhHHHHHHHHHHHcCCCCCCCCCCC
Q 044538 30 DIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIGRH-SRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPI 108 (158)
Q Consensus 30 ~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 108 (158)
..+.+|++|++.+|++++|+||||+||||+++++++...-. .+|.. +.. ...+. ..+.++..++..+... +..
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la-~~G~~vpa~-~~~l~---~~d~I~~~~~~~d~~~-~~~ 89 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMA-QIGCFVPAE-YATLP---IFNRLLSRLSNDDSME-RNL 89 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHH-HcCCCcchh-hcCcc---ChhheeEecCCccccc-hhh
Confidence 35789999999999999999999999999999997543211 12221 111 11111 1233455566654333 456
Q ss_pred CCCChHHHHHHHHHHHHhh------------CCCHHHH----HHHHHHHhhcCCeEEEEeecCCC
Q 044538 109 ANLSGGQKVRVMFTLVSMY------------HLDTQSI----VAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l~------------~lD~~~~----~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
+.+|+|++|+..+. +.+. ++|+... ..+++.+.+.+.++|++||+.++
T Consensus 90 S~fs~e~~~~~~il-~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l 153 (204)
T cd03282 90 STFASEMSETAYIL-DYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDI 153 (204)
T ss_pred hHHHHHHHHHHHHH-HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHH
Confidence 89999999876553 3322 4555442 34555555667899999998754
No 399
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.59 E-value=7.5e-15 Score=109.62 Aligned_cols=124 Identities=18% Similarity=0.130 Sum_probs=71.4
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-------------eeee---------ccccc---hhhHh---
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-------------LRIG---------RHSRH---LEDLL--- 84 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-------------~~~~---------~~~~~---~~~~~--- 84 (158)
++++.+++.+| +.+|+||||||||||+..|....... +..| ..... ..+..
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 45667777664 77999999999999999886321100 0000 00000 00000
Q ss_pred hHHHH--------HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh----------------hCCCHHHHHHHHHH
Q 044538 85 TMEEA--------VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM----------------YHLDTQSIVAVAVT 140 (158)
Q Consensus 85 ~~~~~--------~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l----------------~~lD~~~~~~l~~~ 140 (158)
..... ..+.+..+.-........+.+||+|||||+.+|+++. .++|+.....+.+.
T Consensus 93 ~~q~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~ 172 (213)
T cd03277 93 LPQDRVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDM 172 (213)
T ss_pred EchHHHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHH
Confidence 00000 1123333322111123456899999999988764422 16999999988888
Q ss_pred Hhhc----C-CeEEEEeecCCC
Q 044538 141 LDEF----A-GGVVLVSHDSRL 157 (158)
Q Consensus 141 l~~~----~-~tvi~vtHd~~~ 157 (158)
+.+. + .++|++|||+..
T Consensus 173 l~~~~~~~g~~~viiith~~~~ 194 (213)
T cd03277 173 LVETACKEGTSQYFLITPKLLP 194 (213)
T ss_pred HHHHhhcCCCceEEEEchhhcc
Confidence 8554 2 379999998643
No 400
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.59 E-value=5.3e-15 Score=107.56 Aligned_cols=118 Identities=21% Similarity=0.263 Sum_probs=67.7
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc-eeeeccccch---hhHhhH---HHHHHHH--HHHcCCCCCCCC
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK-LRIGRHSRHL---EDLLTM---EEAVHAK--LRKFGLPGHNHL 105 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~-~~~~~~~~~~---~~~~~~---~~~~~~~--l~~~~l~~~~~~ 105 (158)
+..+...++.+.+|+||||||||+++..|......+ .+.... ... .+.... ...++-. ...+-+.. .+.
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~-~~~ 91 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRG-SLLFLAGGGVKAGINSASVEITFDKSYFLVLQ-GKV 91 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCc-chhhhcccccCCCCceEEEEEEEECceEEecC-CcC
Confidence 444555444599999999999999999987422111 000000 000 000000 0000000 00111111 122
Q ss_pred CCCCCCChHHHHHHHHHHHHh----h------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFTLVSM----Y------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l----~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
.++ ||+||+||++||+++. . ++|+.....+.+.+.+. +.++|++||+.+
T Consensus 92 ~~~--LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~ 159 (178)
T cd03239 92 EQI--LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE 159 (178)
T ss_pred ccc--CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 343 9999999999998764 1 58999998888888664 368999999965
No 401
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.53 E-value=1.8e-14 Score=103.23 Aligned_cols=110 Identities=23% Similarity=0.261 Sum_probs=68.1
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc---eeeeccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCC
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK---LRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIAN 110 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 110 (158)
...++.+.++.++.|+|||||||||+++.+....... .......+.... .. ...+. + . ....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~-~~-~~~~~-------~---i--~~~~~ 77 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCI-VA-AVSAE-------L---I--FTRLQ 77 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCc-ce-eeEEE-------E---e--hheee
Confidence 4556667777899999999999999999986422111 000000000000 00 00000 0 0 11246
Q ss_pred CChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 111 LSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 111 LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
||+||+||+.+|+++.. ++|+.....+.+.+.++ +.++|++||+.++
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~ 143 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPEL 143 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHH
Confidence 99999999999887742 58888888777776554 4699999999753
No 402
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.53 E-value=1.1e-13 Score=117.62 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHh---hcCCeEEEEe
Q 044538 91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLD---EFAGGVVLVS 152 (158)
Q Consensus 91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~---~~~~tvi~vt 152 (158)
.+.|..+||.....-++..+|||||.|||-+|.-+.. +|...-...+++.|. +.+.|||+|.
T Consensus 803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIE 882 (935)
T COG0178 803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882 (935)
T ss_pred HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 3456778887654446888999999999999865542 455555665555554 4567999999
Q ss_pred ecCCCC
Q 044538 153 HDSRLI 158 (158)
Q Consensus 153 Hd~~~~ 158 (158)
|+++.+
T Consensus 883 HNLdVI 888 (935)
T COG0178 883 HNLDVI 888 (935)
T ss_pred cccceE
Confidence 999864
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=5.8e-15 Score=130.45 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=93.3
Q ss_pred CCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh-------------------cceeeeccccchh--hHhh
Q 044538 27 NLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR-------------------QKLRIGRHSRHLE--DLLT 85 (158)
Q Consensus 27 ~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~-------------------~~~~~~~~~~~~~--~~~~ 85 (158)
++++.+|+||+=-+.||..+||+|+||||||||+++|+++.. -+...||..|... +.++
T Consensus 801 G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 801 GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 345678999999999999999999999999999999996521 0123454433210 1111
Q ss_pred ---------------------HHHHHHHHHHHcCCCCCCCCCCCC----CCChHHHHHHHHHHHHh-------------h
Q 044538 86 ---------------------MEEAVHAKLRKFGLPGHNHLTPIA----NLSGGQKVRVMFTLVSM-------------Y 127 (158)
Q Consensus 86 ---------------------~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqkqrv~ia~~~l-------------~ 127 (158)
..+.++++++.+++++..+ .-++ -||.+||+|+.||--+. .
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~d-aiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTS 959 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYAD-ALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTS 959 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhh-hhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCC
Confidence 1255788889999976443 3334 49999999999963222 2
Q ss_pred CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 128 HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 128 ~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
+||.++...+++.+++. +.|||++=|++.
T Consensus 960 GLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 960 GLDSQAAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred CccHHHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 79999998888888775 579999999864
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.53 E-value=7.9e-15 Score=108.50 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=69.0
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCC
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANL 111 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 111 (158)
+-..++++.+|++++|+||||||||||+++++...... ..| +.+.... .... ....+..++..+... ...+.+
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~-~~g~~~~~~~~-~i~~---~dqi~~~~~~~d~i~-~~~s~~ 92 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLA-QIGCFVPAESA-SIPL---VDRIFTRIGAEDSIS-DGRSTF 92 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHH-HcCCCcccccc-ccCC---cCEEEEEecCccccc-CCceeH
Confidence 34667888899999999999999999999998432100 011 1110000 0000 111222333333222 345788
Q ss_pred ChHHHHHHHHHHHHh-----------hCCCHHHHHHH----HHHHhhcCCeEEEEeecCCC
Q 044538 112 SGGQKVRVMFTLVSM-----------YHLDTQSIVAV----AVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 112 SgGqkqrv~ia~~~l-----------~~lD~~~~~~l----~~~l~~~~~tvi~vtHd~~~ 157 (158)
|.+++|...++..+. .++|+.....+ ++.+.+.+.++|++||+.++
T Consensus 93 ~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~ 153 (202)
T cd03243 93 MAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHEL 153 (202)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHH
Confidence 888888666643221 16888766544 34444456799999999754
No 405
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=2.3e-14 Score=107.63 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=77.1
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCC
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIA 109 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 109 (158)
.+.+|++++..++++++|+||||+||||++++++...-- ...| +.+..... ...+.+++..+++.+.. ..
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~l-a~~g~~vpa~~~~----~~~~~~il~~~~l~d~~----~~ 88 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLM-AQIGCFVPCDSAD----IPIVDCILARVGASDSQ----LK 88 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHH-HHhCCCcCcccEE----EeccceeEeeeccccch----hc
Confidence 468999999999999999999999999999998732110 0112 11111000 01233456677776432 46
Q ss_pred CCChHHHHHHHHHHHH--hh---------------CCCHHHHHHHH-HHHhh-cCCeEEEEeecC
Q 044538 110 NLSGGQKVRVMFTLVS--MY---------------HLDTQSIVAVA-VTLDE-FAGGVVLVSHDS 155 (158)
Q Consensus 110 ~LSgGqkqrv~ia~~~--l~---------------~lD~~~~~~l~-~~l~~-~~~tvi~vtHd~ 155 (158)
.+|.|++|++.+++++ +. .+|.....+.. +.+.+ .+.++|++||+.
T Consensus 89 ~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~ 153 (222)
T cd03285 89 GVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFH 153 (222)
T ss_pred CcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechH
Confidence 7999999999997665 22 36776665443 55554 467999999974
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.50 E-value=7.3e-14 Score=127.94 Aligned_cols=67 Identities=24% Similarity=0.249 Sum_probs=53.0
Q ss_pred HHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh---------------CCCHHHHHHHHHHHhh---cCCeEEEEe
Q 044538 91 HAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY---------------HLDTQSIVAVAVTLDE---FAGGVVLVS 152 (158)
Q Consensus 91 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~---------------~lD~~~~~~l~~~l~~---~~~tvi~vt 152 (158)
.+.|..+||.....-++..+|||||.||+-||.-+.. +|++.....+++.+++ .+.|||+|+
T Consensus 1680 L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivie 1759 (1809)
T PRK00635 1680 LQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759 (1809)
T ss_pred HHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4567888998766667889999999999999866542 5788888888777554 468999999
Q ss_pred ecCCC
Q 044538 153 HDSRL 157 (158)
Q Consensus 153 Hd~~~ 157 (158)
||+++
T Consensus 1760 H~~~~ 1764 (1809)
T PRK00635 1760 HDPAL 1764 (1809)
T ss_pred CCHHH
Confidence 99864
No 407
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.49 E-value=2.8e-13 Score=104.75 Aligned_cols=48 Identities=25% Similarity=0.362 Sum_probs=39.3
Q ss_pred CCCChHHHHHHHHHHHHh----------------hCCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 109 ANLSGGQKVRVMFTLVSM----------------YHLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l----------------~~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
..|||||+||+++|++++ .+||+.....+.+.+.+. +.++|++|||++
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~ 234 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQ 234 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHH
Confidence 359999999999986532 169999999999988776 368999999964
No 408
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.3e-13 Score=108.69 Aligned_cols=126 Identities=18% Similarity=0.275 Sum_probs=92.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---------------------ceeeeccccc-----------
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---------------------KLRIGRHSRH----------- 79 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---------------------~~~~~~~~~~----------- 79 (158)
.++|+||++.+||++||.|--|||+|-|++.|.+.... +..+++.+.+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 47899999999999999999999999999999863210 0012222111
Q ss_pred -----------------hhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCC
Q 044538 80 -----------------LEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLD 130 (158)
Q Consensus 80 -----------------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD 130 (158)
+.+.-...+.+.++.+.+++.......++.+||||-||||.||+.+.. +.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 000011224567788888886655557889999999999999987764 688
Q ss_pred HHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 131 TQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 131 ~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
.-+..++.++++++ +.+||++|-++.+
T Consensus 434 VGAK~eIy~li~~lA~~G~ail~iSSElpE 463 (500)
T COG1129 434 VGAKAEIYRLIRELAAEGKAILMISSELPE 463 (500)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence 88888888887765 5799999988764
No 409
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.42 E-value=1.8e-12 Score=96.83 Aligned_cols=61 Identities=26% Similarity=0.402 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEE
Q 044538 88 EAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVV 149 (158)
Q Consensus 88 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi 149 (158)
..+...+..+.+.. ..||||||.+++||-.+.. +||...+..+.+.|.+.. .-+|
T Consensus 121 ~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~i 193 (220)
T PF02463_consen 121 KDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFI 193 (220)
T ss_dssp HHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred cccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44555566555533 3899999999999744321 699999999999999886 5799
Q ss_pred EEeecC
Q 044538 150 LVSHDS 155 (158)
Q Consensus 150 ~vtHd~ 155 (158)
++||+.
T Consensus 194 i~Th~~ 199 (220)
T PF02463_consen 194 ITTHNP 199 (220)
T ss_dssp EE-S-H
T ss_pred cccccc
Confidence 999985
No 410
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.38 E-value=4e-12 Score=103.22 Aligned_cols=144 Identities=19% Similarity=0.266 Sum_probs=102.5
Q ss_pred chhhhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhc---ce-----------------
Q 044538 12 SPMLQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQ---KL----------------- 71 (158)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~---~~----------------- 71 (158)
.+.+++.++ +..-..+ ...+++|||++.+||++||.|-.|-|.+-|+.+|++..+. ++
T Consensus 255 ~~vL~V~~L-~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDL-SVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeee-EeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 456666555 5544332 3579999999999999999999999999999999975421 00
Q ss_pred --eeeccccch-----------h-------------------hHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHH
Q 044538 72 --RIGRHSRHL-----------E-------------------DLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRV 119 (158)
Q Consensus 72 --~~~~~~~~~-----------~-------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 119 (158)
.+++.+.+. . +.....+.+.++++.|++.......++..||||.+||+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~ 412 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKL 412 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehh
Confidence 112221110 0 00112355677889999875444457889999999999
Q ss_pred HHHHHHhh------------CCCHHHHHHHHHHHhhc---CCeEEEEeecCCC
Q 044538 120 MFTLVSMY------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSRL 157 (158)
Q Consensus 120 ~ia~~~l~------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~~ 157 (158)
-+||-+.. +||..+.+.+.+.+.+. +.+|+++|-|+++
T Consensus 413 IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDE 465 (501)
T COG3845 413 ILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDE 465 (501)
T ss_pred hhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHH
Confidence 99887653 79999999888877543 5789999999875
No 411
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.33 E-value=1.5e-12 Score=112.86 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=70.7
Q ss_pred eeeEEeeCC-CEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 044538 35 NVDMGIDMG-TCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLS 112 (158)
Q Consensus 35 ~isl~i~~G-~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 112 (158)
++|+++.++ ++++|+||||+|||||++++++..... ..| +.+......+.. .......++...... ...+++|
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~a-q~G~~Vpa~~~~~~~~---~d~i~~~i~~~~si~-~~LStfS 387 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMF-QSGIPIPANEHSEIPY---FEEIFADIGDEQSIE-QNLSTFS 387 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHH-HhCCCccCCccccccc---hhheeeecChHhHHh-hhhhHHH
Confidence 579999887 899999999999999999998652110 011 111100000000 011111222222122 2458899
Q ss_pred hHHHHHHHHHHHHh-----------hCCCHHHHHHHH----HHHhhcCCeEEEEeecCC
Q 044538 113 GGQKVRVMFTLVSM-----------YHLDTQSIVAVA----VTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 113 gGqkqrv~ia~~~l-----------~~lD~~~~~~l~----~~l~~~~~tvi~vtHd~~ 156 (158)
+|+++++.|+..+. .++|+.....+. +.+.+.+.++|++||+.+
T Consensus 388 ~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 388 GHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 99999999876531 268887776553 334445678999999864
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.32 E-value=4.4e-12 Score=93.79 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=28.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++|++|+. |++++|+||||||||||++++++.
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHH
Confidence 4567666655 799999999999999999999864
No 413
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.26 E-value=6.7e-12 Score=100.78 Aligned_cols=131 Identities=21% Similarity=0.375 Sum_probs=82.3
Q ss_pred EEcCCCCCcceeeeeEEeeCCC-----EEEEECCCCCCcchHHHHHHhhhhc-------ceeeeccccchhhHh--hH--
Q 044538 23 FSYPNLQDIRLSNVDMGIDMGT-----CVAIVGPNDTGKSPLPNLLAVRRRQ-------KLRIGRHSRHLEDLL--TM-- 86 (158)
Q Consensus 23 ~~~~~~~~~~l~~isl~i~~G~-----~~~liG~nGsGKSTLl~~i~~~~~~-------~~~~~~~~~~~~~~~--~~-- 86 (158)
+.|+...+ .+.+..+.|..|+ ++..+|+||.||||+++++++...+ .+.+++.+|...+-. ++
T Consensus 343 y~Yp~m~k-~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ 421 (592)
T KOG0063|consen 343 YSYPKMKK-TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQ 421 (592)
T ss_pred eccCccee-eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHH
Confidence 55665543 4788999999886 5899999999999999999984321 223444443221100 00
Q ss_pred ------------HHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHh------------hCCCHHHHHHHHHHHh
Q 044538 87 ------------EEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSM------------YHLDTQSIVAVAVTLD 142 (158)
Q Consensus 87 ------------~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l------------~~lD~~~~~~l~~~l~ 142 (158)
..-+.+.++-+.++...+ +-+..|||||+|||++|..+= ..||.+.+...-..++
T Consensus 422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~d-qevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Askvik 500 (592)
T KOG0063|consen 422 LLHTKIRDAYMHPQFVNDVMKPLQIENIID-QEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIK 500 (592)
T ss_pred HHHHHhHhhhcCHHHHHhhhhhhhHHHHHh-HHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHH
Confidence 122344555555554433 456899999999999964321 1477766554444444
Q ss_pred h----cCCeEEEEeecC
Q 044538 143 E----FAGGVVLVSHDS 155 (158)
Q Consensus 143 ~----~~~tvi~vtHd~ 155 (158)
+ .+.|-.+|.||.
T Consensus 501 RfilhakktafvVEhdf 517 (592)
T KOG0063|consen 501 RFILHAKKTAFVVEHDF 517 (592)
T ss_pred HHHHhccchhhhhhhHH
Confidence 3 346778888874
No 414
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.25 E-value=6.4e-12 Score=83.79 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=32.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
++|++++|++++|++++|+||||||||||++++.
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 5799999999999999999999999999999986
No 415
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.23 E-value=1.7e-11 Score=91.75 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.+|++++..+ ++++|+|||||||||+++.+++
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence 467899999887 9999999999999999999975
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.22 E-value=3.4e-12 Score=93.27 Aligned_cols=106 Identities=17% Similarity=0.107 Sum_probs=61.2
Q ss_pred EEEEECCCCCCcchHHHHHHhhhhcceeeec-cccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHH
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRRRQKLRIGR-HSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTL 123 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~ 123 (158)
+++|+||||+||||+++.++...... ..|. .+.. ... -....+++..++..+... ...+++|+|++|...++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la-~~G~~v~a~---~~~-~~~~d~il~~~~~~d~~~-~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMA-QIGSFVPAE---SAE-LPVFDRIFTRIGASDSLA-QGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHH-HhCCCeeeh---heE-ecccceEEEEeCCCCchh-ccccHHHHHHHHHHHHHH
Confidence 36899999999999999987322100 1111 0000 000 011123345556555443 456899999998776654
Q ss_pred HHh-----------hCCCHHHHHHH----HHHHhh-cCCeEEEEeecCC
Q 044538 124 VSM-----------YHLDTQSIVAV----AVTLDE-FAGGVVLVSHDSR 156 (158)
Q Consensus 124 ~~l-----------~~lD~~~~~~l----~~~l~~-~~~tvi~vtHd~~ 156 (158)
.+. .++|+.....+ ++.+.+ .+.++|++||+.+
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 311 16888755444 333333 3678999999864
No 417
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.5e-10 Score=89.27 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=36.7
Q ss_pred CCCCChHHHHHHHHHHHHh---------------------hCCCHHHHHHHHHHHhhcCCeEEEEeecC
Q 044538 108 IANLSGGQKVRVMFTLVSM---------------------YHLDTQSIVAVAVTLDEFAGGVVLVSHDS 155 (158)
Q Consensus 108 ~~~LSgGqkqrv~ia~~~l---------------------~~lD~~~~~~l~~~l~~~~~tvi~vtHd~ 155 (158)
...+|+||+|++++|+++. .+||+.....+.+.+.+.+ .+++++|+.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~-q~ii~~~~~ 248 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV-QTFVTTTDL 248 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC-CEEEEeCCc
Confidence 3568999999999987753 1699999999999998876 455555554
No 418
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.15 E-value=3.7e-11 Score=96.56 Aligned_cols=116 Identities=22% Similarity=0.355 Sum_probs=75.6
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhhhccee-----------eecc----------------------ccchhhHh---
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRRRQKLR-----------IGRH----------------------SRHLEDLL--- 84 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~~-----------~~~~----------------------~~~~~~~~--- 84 (158)
.+|++.+++|.||-||||-++++++..+.++. +++. +|+.....
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 68999999999999999999999976543321 0100 01000000
Q ss_pred --h---------HHHHHHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh------------CCCHHHHHHHHHHH
Q 044538 85 --T---------MEEAVHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY------------HLDTQSIVAVAVTL 141 (158)
Q Consensus 85 --~---------~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~------------~lD~~~~~~l~~~l 141 (158)
. ..+...+++..+.|..... +-+.+|||||.||.+||++.+. .||...+......+
T Consensus 178 k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~-re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~I 256 (592)
T KOG0063|consen 178 KGTVGSLLDRKDERDNKEEVCDQLDLNNLLD-REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITI 256 (592)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHhhHHH-hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHH
Confidence 0 0122345566666665443 5568999999999999877654 47777766555555
Q ss_pred hhcC---CeEEEEeecCCC
Q 044538 142 DEFA---GGVVLVSHDSRL 157 (158)
Q Consensus 142 ~~~~---~tvi~vtHd~~~ 157 (158)
+.+- .=||+|.||+..
T Consensus 257 Rsl~~p~~YiIVVEHDLsV 275 (592)
T KOG0063|consen 257 RSLINPDRYIIVVEHDLSV 275 (592)
T ss_pred HHhhCCCCeEEEEEeechH
Confidence 5542 459999999864
No 419
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.09 E-value=8.9e-11 Score=88.18 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=33.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+.+|++|.+.+|++++|+||||+||||+++++++
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999986
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.08 E-value=5.6e-10 Score=83.37 Aligned_cols=31 Identities=35% Similarity=0.502 Sum_probs=25.0
Q ss_pred eeeEEeeCC--CEEEEECCCCCCcchHHHHHHh
Q 044538 35 NVDMGIDMG--TCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 35 ~isl~i~~G--~~~~liG~nGsGKSTLl~~i~~ 65 (158)
..++.+.++ .+++|+||||+|||||++.+..
T Consensus 19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred cceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence 345555555 7899999999999999999873
No 421
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.03 E-value=1.6e-10 Score=100.55 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=68.8
Q ss_pred eeeEEeeC-CCEEEEECCCCCCcchHHHHHHhhhhcceeee-ccccchhhHhhHHHHHHHHHHHcCCCCCCCCCCCCCCC
Q 044538 35 NVDMGIDM-GTCVAIVGPNDTGKSPLPNLLAVRRRQKLRIG-RHSRHLEDLLTMEEAVHAKLRKFGLPGHNHLTPIANLS 112 (158)
Q Consensus 35 ~isl~i~~-G~~~~liG~nGsGKSTLl~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 112 (158)
+.++.+.. +.++.|+|||++||||+++.++...--. ..| +.+......+. ....++..+|-..... ...+++|
T Consensus 318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~ma-q~G~~vpa~~~~~i~---~~~~i~~~ig~~~si~-~~lStfS 392 (782)
T PRK00409 318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAALMA-KSGLPIPANEPSEIP---VFKEIFADIGDEQSIE-QSLSTFS 392 (782)
T ss_pred CceeEECCCceEEEEECCCCCCcHHHHHHHHHHHHHH-HhCCCcccCCCcccc---ccceEEEecCCccchh-hchhHHH
Confidence 55666654 4679999999999999999886321100 111 11110000000 0111222334333332 3458999
Q ss_pred hHHHHHHHHHHHHh-----------hCCCHHHHHHHH----HHHhhcCCeEEEEeecCC
Q 044538 113 GGQKVRVMFTLVSM-----------YHLDTQSIVAVA----VTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 113 gGqkqrv~ia~~~l-----------~~lD~~~~~~l~----~~l~~~~~tvi~vtHd~~ 156 (158)
+||+|++.|++++- .++|+.....+. +.+.+.+.++|++||+.+
T Consensus 393 ~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e 451 (782)
T PRK00409 393 GHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE 451 (782)
T ss_pred HHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH
Confidence 99999999976632 268887655553 344455679999999865
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.02 E-value=3.3e-09 Score=85.09 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=40.3
Q ss_pred CCCChHHHHHHHHHHHHhh---------------------CCCHHHHHHHHHHHhhcCCeEEEEeecCC
Q 044538 109 ANLSGGQKVRVMFTLVSMY---------------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l~---------------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~ 156 (158)
..+|.||+|++++|.++.. +||+..+..+.+.+.+.+..++++||+.+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~ 340 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLE 340 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChh
Confidence 5899999999999865531 69999999999999876668999999864
No 423
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.01 E-value=2.1e-09 Score=87.94 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=33.1
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||+++|++..
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 182 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT 182 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 478999 999999999999999999999999998654
No 424
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.01 E-value=4.9e-10 Score=99.88 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=84.6
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcc--------------------eeeeccccch----------
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQK--------------------LRIGRHSRHL---------- 80 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~--------------------~~~~~~~~~~---------- 80 (158)
.+++|+|.-+++|+.+.++||.|||||||++.+++..... ....|..+..
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVre 208 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRE 208 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEee
Confidence 5899999999999999999999999999999999642210 1112211110
Q ss_pred --------------hhHhhHHH----HHHHHHHHcCCCCCCCC----CCCCCCChHHHHHHHHHHHHhh-----------
Q 044538 81 --------------EDLLTMEE----AVHAKLRKFGLPGHNHL----TPIANLSGGQKVRVMFTLVSMY----------- 127 (158)
Q Consensus 81 --------------~~~~~~~~----~~~~~l~~~~l~~~~~~----~~~~~LSgGqkqrv~ia~~~l~----------- 127 (158)
.+.....+ ..+.+++.+|++.-.+. .-..-.|||||+||.+|-++..
T Consensus 209 TldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 209 TLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred hhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 00111112 34578899999754331 1235799999999999744332
Q ss_pred -CCCHHHHHHHHHHHhhcC----CeEEEEeec
Q 044538 128 -HLDTQSIVAVAVTLDEFA----GGVVLVSHD 154 (158)
Q Consensus 128 -~lD~~~~~~l~~~l~~~~----~tvi~vtHd 154 (158)
+||..+.-++.+.+++.. .|.+++=++
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q 320 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQ 320 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEecc
Confidence 799999999999888763 466665554
No 425
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.96 E-value=2.9e-10 Score=93.04 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=29.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHH
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPN 61 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~ 61 (158)
.+|++||+++++||+++|+||||||||||++
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4689999999999999999999999999999
No 426
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.94 E-value=1.6e-09 Score=95.60 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=52.6
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS 155 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~ 155 (158)
.++.+|+.....++++.+|||||+|||+||+++.. +||+.....+++.|+++ +.|||+||||+
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~ 551 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDE 551 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 57788887553457889999999999999988654 58899998888887654 57999999997
Q ss_pred CC
Q 044538 156 RL 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 552 ~~ 553 (943)
T PRK00349 552 DT 553 (943)
T ss_pred HH
Confidence 64
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.92 E-value=2.9e-09 Score=93.88 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=52.2
Q ss_pred HHHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhc---CCeEEEEeecC
Q 044538 93 KLRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEF---AGGVVLVSHDS 155 (158)
Q Consensus 93 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~ 155 (158)
.+..+|+.....++++.+|||||+|||.||+++.. +||+.....+.+.|+++ +.|||+||||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 46778886543346789999999999999988753 68999998888888654 56999999997
Q ss_pred CC
Q 044538 156 RL 157 (158)
Q Consensus 156 ~~ 157 (158)
++
T Consensus 550 ~~ 551 (924)
T TIGR00630 550 ET 551 (924)
T ss_pred HH
Confidence 64
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.90 E-value=1.9e-09 Score=64.87 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=27.2
Q ss_pred eeeeeEEeeC-CCEEEEECCCCCCcchHHHHHHh
Q 044538 33 LSNVDMGIDM-GTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 33 l~~isl~i~~-G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+++-++++.+ |+++.|.|||||||||+++++..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455777775 56999999999999999998864
No 429
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.82 E-value=3.8e-09 Score=79.18 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.5
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+-+|++|+..+|++++|+||||+||||+++.++.
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~ 52 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCL 52 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHH
Confidence 46789999999999999999999999999999874
No 430
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.82 E-value=1e-09 Score=91.16 Aligned_cols=116 Identities=12% Similarity=0.142 Sum_probs=63.7
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhh--hh--cce-eeeccccchhhHhh--------HHHH----------------
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVR--RR--QKL-RIGRHSRHLEDLLT--------MEEA---------------- 89 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~--~~--~~~-~~~~~~~~~~~~~~--------~~~~---------------- 89 (158)
=+++|..+.|.||+|||||||..-++.. .. .+. .+... ....+... ..+.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence 4789999999999999999998766432 22 221 11111 00000000 0000
Q ss_pred HHHHHHHcCCCCCCCCCCCCCCChHHHHHHHHH--HHHhhCCCH--HHHHHHH---HHHhhcCCeEEEEeecCC
Q 044538 90 VHAKLRKFGLPGHNHLTPIANLSGGQKVRVMFT--LVSMYHLDT--QSIVAVA---VTLDEFAGGVVLVSHDSR 156 (158)
Q Consensus 90 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ia--~~~l~~lD~--~~~~~l~---~~l~~~~~tvi~vtHd~~ 156 (158)
....++.+++..... +....+|+|++|||.|+ .++...+|. ..+..+. +.+++.+.|+|++||+.+
T Consensus 96 ~~~~~~~~~l~~~l~-~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~TvLLtsh~~~ 168 (484)
T TIGR02655 96 GQDVVGGFDLSALIE-RINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTTVMTTERIE 168 (484)
T ss_pred cccccccCCHHHHHH-HHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 001112222222211 23468999999999997 344444443 2334444 445556789999999864
No 431
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.80 E-value=1.4e-08 Score=77.57 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=28.1
Q ss_pred eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 35 NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 35 ~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|.=+.+.+|+.++|+||+|+|||||++.+...
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 44568899999999999999999999998753
No 432
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.75 E-value=1.2e-07 Score=69.09 Aligned_cols=49 Identities=12% Similarity=0.245 Sum_probs=35.0
Q ss_pred CCCCChHHHHHHHHHHHHhh-----------CCCHHHHHHHHHHHhhc---CCeEEEEeecCC
Q 044538 108 IANLSGGQKVRVMFTLVSMY-----------HLDTQSIVAVAVTLDEF---AGGVVLVSHDSR 156 (158)
Q Consensus 108 ~~~LSgGqkqrv~ia~~~l~-----------~lD~~~~~~l~~~l~~~---~~tvi~vtHd~~ 156 (158)
.+..|.||-=--.+.++.-. .|.+..+..++..|+++ +.-+||+||.+-
T Consensus 127 Lh~~SHGEsf~~i~~~rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 127 LHHMSHGESFLAIFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred hhhhccchHHHHHHHHHhccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 46789999765555555432 46788888888887765 456999999853
No 433
>PRK13695 putative NTPase; Provisional
Probab=98.74 E-value=8.3e-09 Score=74.49 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=58.8
Q ss_pred EEEEECCCCCCcchHHHHHHhhhhc-cee-eeccccchhhHh--------hHHHHHHHHHHHcCC-CCCCCCCCCCCCCh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRRRQ-KLR-IGRHSRHLEDLL--------TMEEAVHAKLRKFGL-PGHNHLTPIANLSG 113 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~~~-~~~-~~~~~~~~~~~~--------~~~~~~~~~l~~~~l-~~~~~~~~~~~LSg 113 (158)
.++|+|+||||||||++.+...... ... .++..+...... .........+...+. ......++...+||
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lsg 81 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYTEEVREGGKRIGFKIIDLDTGEEGILARVGFPSRPRVGKYVVNLED 81 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEcHHHHhcCCccceEEEEcCCCCeEEccccCCCCCCceeeEEEehHH
Confidence 4789999999999999988654321 111 222221110000 000001112223332 11111223457999
Q ss_pred HHHHHHHHHHHHhh--------------CCCHHHHHHHHHHHhhcCCeEEEEeecC
Q 044538 114 GQKVRVMFTLVSMY--------------HLDTQSIVAVAVTLDEFAGGVVLVSHDS 155 (158)
Q Consensus 114 Gqkqrv~ia~~~l~--------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~ 155 (158)
+++-+..++...+. .+|......+.+.+ +.+.++|+++|+.
T Consensus 82 le~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~ 136 (174)
T PRK13695 82 LERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRR 136 (174)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECch
Confidence 99999988665542 12333344444555 5678999999984
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.69 E-value=2.4e-07 Score=70.02 Aligned_cols=28 Identities=39% Similarity=0.444 Sum_probs=24.1
Q ss_pred EeeCCCEEEEECCCCCCcchH-HHHHHhh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPL-PNLLAVR 66 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTL-l~~i~~~ 66 (158)
-+++|+++.|.|||||||||| ++++...
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999 5666654
No 435
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.68 E-value=1.2e-07 Score=77.89 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=33.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||+++|++..
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 187 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT 187 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478888 999999999999999999999999998654
No 436
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=1e-07 Score=77.86 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=33.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
.+++++ |++.+|++++|+|+||||||||+++|++...
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~ 180 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ 180 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence 479999 9999999999999999999999999987543
No 437
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=1.8e-07 Score=76.38 Aligned_cols=100 Identities=14% Similarity=0.159 Sum_probs=60.9
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhhcce-eeeccccchhhHhhHHHHHHHHHHHcCCC
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRRQKL-RIGRHSRHLEDLLTMEEAVHAKLRKFGLP 100 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 100 (158)
+..|..+. .+++. .|.+.+|+.++|+|+||+|||||++++++...... .+....+. .....+.++..+..-++.
T Consensus 137 ~~~l~TGi-raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer---g~ev~e~~~~~l~~~gl~ 211 (432)
T PRK06793 137 TDVFETGI-KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER---GREVKDFIRKELGEEGMR 211 (432)
T ss_pred hhccCCCC-EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC---cccHHHHHHHHhhhcccc
Confidence 44454332 36766 59999999999999999999999999987553321 12221111 112223333344443433
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHh
Q 044538 101 GHNHLTPIANLSGGQKVRVMFTLVSM 126 (158)
Q Consensus 101 ~~~~~~~~~~LSgGqkqrv~ia~~~l 126 (158)
....-...++-|.|+|+|++.+++.+
T Consensus 212 ~tvvv~~tsd~s~~~r~ra~~~a~~i 237 (432)
T PRK06793 212 KSVVVVATSDESHLMQLRAAKLATSI 237 (432)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 21111234789999999999976554
No 438
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.57 E-value=9.9e-08 Score=77.04 Aligned_cols=50 Identities=28% Similarity=0.373 Sum_probs=42.9
Q ss_pred hhhheeeeEEcCCCCCccee-----------eeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 15 LQLIEVISFSYPNLQDIRLS-----------NVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~-----------~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+.+.++ ++.|++.. .+|+ |+++.+.+|+.++|+||+|||||||++.+...
T Consensus 131 i~Fe~L-Tf~YP~er-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~ 191 (415)
T TIGR00767 131 VLFENL-TPLYPNER-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQA 191 (415)
T ss_pred eEEEEe-eecCCCcc-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHh
Confidence 456666 99998754 5786 99999999999999999999999999998753
No 439
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.52 E-value=6.3e-07 Score=69.25 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.2
Q ss_pred CEEEEECCCCCCcchHHHHHHhhhh
Q 044538 44 TCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 44 ~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
..++|+||||||||||++.+++...
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5689999999999999999997654
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.52 E-value=1e-06 Score=63.79 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.5
Q ss_pred EEEECCCCCCcchHHHHHHh
Q 044538 46 VAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 46 ~~liG~nGsGKSTLl~~i~~ 65 (158)
+.|.||+|+|||||.--++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67899999999999765543
No 441
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=98.51 E-value=8.8e-08 Score=69.70 Aligned_cols=31 Identities=26% Similarity=0.544 Sum_probs=26.3
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
++++++++.+| +++|+||||+||||++.+|.
T Consensus 10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~ 40 (202)
T PF13476_consen 10 FKDLEIDFSPG-LNVIYGPNGSGKSTILEAIR 40 (202)
T ss_dssp EEEEEEE--SE-EEEEEESTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-cEEEECCCCCCHHHHHHHHH
Confidence 57888999776 99999999999999999886
No 442
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.49 E-value=1.1e-06 Score=72.92 Aligned_cols=36 Identities=33% Similarity=0.472 Sum_probs=30.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++++.++.+.+|.+++++||||+||||++..|+...
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHH
Confidence 355677778899999999999999999999988643
No 443
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.46 E-value=5.8e-08 Score=70.95 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=30.2
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+-+.+.+.+|+.++|+||||||||||++.+++..
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34467789999999999999999999999998643
No 444
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.45 E-value=1.2e-07 Score=69.27 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCCcchHHHHHHhhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
|++++|+||||||||||+++|+...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 7899999999999999999998643
No 445
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.44 E-value=1.1e-07 Score=70.58 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=24.5
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++|++++|+||||||||||++.|++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999998653
No 446
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.41 E-value=9.4e-07 Score=69.91 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=37.1
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
...|..+ ..+++++ |.+.+|++++|+|+||+|||||+++|++...
T Consensus 50 ~~~l~tG-i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 50 DEVLPTG-VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred eeEcCCC-cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 4445443 3478999 9999999999999999999999999986543
No 447
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.41 E-value=2e-07 Score=67.71 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+|++++|+|+|||||||+++.+++..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999999998643
No 448
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.40 E-value=7.2e-06 Score=61.84 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=61.3
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHhhh-hcceeeeccccchhhHhhHHHHHHHHHHHcCCCCCCC------------C
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAVRR-RQKLRIGRHSRHLEDLLTMEEAVHAKLRKFGLPGHNH------------L 105 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------------~ 105 (158)
=+++|.++.|.|++|||||||...++... .......+.... + +. +.+.+.++.+|++.... .
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e--~--~~-~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~ 95 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE--N--TS-KSYLKQMESVKIDISDFFLWGYLRIFPLNT 95 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC--C--CH-HHHHHHHHHCCCChhHHHhCCCceEEeccc
Confidence 47899999999999999999988875332 111111111111 0 11 11222234444321100 0
Q ss_pred CCCCCCChHHHHHHHHHHHHhh-----------------CCCHHHHHHHHHHH---hhcCCeEEEEeecCC
Q 044538 106 TPIANLSGGQKVRVMFTLVSMY-----------------HLDTQSIVAVAVTL---DEFAGGVVLVSHDSR 156 (158)
Q Consensus 106 ~~~~~LSgGqkqrv~ia~~~l~-----------------~lD~~~~~~l~~~l---~~~~~tvi~vtHd~~ 156 (158)
......|.++.+.+..+...+. ..|......+++.+ .+.+.|+++++|+..
T Consensus 96 ~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 96 EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 1123456788888877655442 23444444554444 444679999999754
No 449
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.37 E-value=4.6e-07 Score=74.26 Aligned_cols=50 Identities=18% Similarity=0.142 Sum_probs=39.9
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+...++ +..|..+. .+++.++ .+.+|++++|+||||||||||++++++..
T Consensus 140 ~~r~~v-~~~l~TGi-~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 140 MTRARV-ETGLRTGV-RVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred eEeecc-eEEcCCCc-EEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444 77776543 4788885 99999999999999999999999998654
No 450
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.36 E-value=1.5e-06 Score=71.06 Aligned_cols=35 Identities=14% Similarity=0.311 Sum_probs=31.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+++.+ |.+.+|++++|+|+||+|||||++++++..
T Consensus 152 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 152 AINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred eecce-EEEcCCCEEEEECCCCCChhHHHHHhccCC
Confidence 56666 999999999999999999999999998643
No 451
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.34 E-value=3.4e-07 Score=67.53 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.7
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++|++++|+||||||||||++.++...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 589999999999999999999998654
No 452
>PRK08149 ATP synthase SpaL; Validated
Probab=98.34 E-value=4.9e-07 Score=73.83 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=33.2
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ +++.+|++++|+|+||+|||||+++|+...
T Consensus 140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC
Confidence 479999 999999999999999999999999998644
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.30 E-value=4.5e-07 Score=65.46 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|++++|+||||||||||++.|+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHcc
Confidence 789999999999999999999853
No 454
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.27 E-value=5.7e-07 Score=64.99 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCcchHHHHHHhh
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
|++++|+|||||||||+.+.|+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999998764
No 455
>PRK05922 type III secretion system ATPase; Validated
Probab=98.27 E-value=3.9e-06 Score=68.70 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=31.2
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+++.+ +.+.+|+.++|+|+||+|||||+++|++..
T Consensus 147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccC
Confidence 56655 999999999999999999999999998654
No 456
>COG3950 Predicted ATP-binding protein involved in virulence [General function prediction only]
Probab=98.24 E-value=7.6e-07 Score=70.30 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=29.5
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
+.++.+++.+++.+.|+|||||||||+++++.
T Consensus 14 f~~lditf~e~~ttIivgpNGsGKTtvLdair 45 (440)
T COG3950 14 FLNLDITFGESETTIIVGPNGSGKTTVLDAIR 45 (440)
T ss_pred hhhceeecCCCceEEEECCCCCChhhHHHHHH
Confidence 56889999999999999999999999998874
No 457
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.24 E-value=1.2e-05 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHhhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++.|.||||+||||++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999887654
No 458
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.22 E-value=2.9e-06 Score=69.27 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=32.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
++ |.+|.+.+|++++|+|+||+|||||+++|++...
T Consensus 130 ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~ 165 (418)
T TIGR03498 130 VI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD 165 (418)
T ss_pred EE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC
Confidence 45 5799999999999999999999999999986543
No 459
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.22 E-value=1.1e-06 Score=71.98 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=36.3
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+..+..+ ..+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus 136 ~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 136 TQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred hheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCC
Confidence 4444433 3479999 999999999999999999999999998644
No 460
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=9.1e-07 Score=72.16 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=24.5
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+.+|++++++||||+||||++..|++.
T Consensus 188 ~~~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 188 IEQGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999988864
No 461
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=8.4e-07 Score=80.68 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=27.6
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++..++++++|+|++|+|||||++.+...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHH
Confidence 4677889999999999999999999999754
No 462
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.2e-06 Score=71.94 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=33.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus 157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~ 192 (451)
T PRK05688 157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFT 192 (451)
T ss_pred eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899 999999999999999999999999998654
No 463
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.21 E-value=3.6e-06 Score=71.02 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=41.7
Q ss_pred CCCCCChHHHHHHHHHHHHh----------h-------------CCCHHHHHHHHHHHhhcC-CeEEEEeecCCC
Q 044538 107 PIANLSGGQKVRVMFTLVSM----------Y-------------HLDTQSIVAVAVTLDEFA-GGVVLVSHDSRL 157 (158)
Q Consensus 107 ~~~~LSgGqkqrv~ia~~~l----------~-------------~lD~~~~~~l~~~l~~~~-~tvi~vtHd~~~ 157 (158)
++..|||||+||++||++++ . +||+.....+.+.+.+.. .+||+|||+.+.
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHD 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhc
Confidence 55799999999999997654 1 388889999999888763 589999999653
No 464
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.19 E-value=5.4e-06 Score=67.61 Aligned_cols=45 Identities=16% Similarity=0.165 Sum_probs=36.2
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+..|..+ ..+++.+ |.+.+|++++|+|+||+|||||+++|+....
T Consensus 118 ~~~~~tG-i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~ 162 (411)
T TIGR03496 118 DEPLDVG-VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE 162 (411)
T ss_pred ceEeeee-EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4444433 2468878 9999999999999999999999999986543
No 465
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.18 E-value=9.6e-07 Score=76.47 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=30.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++.++.+++|++++++||||+||||++..|++.
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhh
Confidence 46678888889999999999999999999988854
No 466
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.18 E-value=1.8e-06 Score=70.64 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=33.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||+++++...
T Consensus 151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~ 186 (439)
T PRK06936 151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSA 186 (439)
T ss_pred ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCC
Confidence 478999 999999999999999999999999998644
No 467
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=1.2e-06 Score=70.52 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.1
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++++.++.+.+|++++++||||+||||++..|+..
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56778889999999999999999999999888754
No 468
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.16 E-value=7e-06 Score=67.01 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=32.9
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||+++|+...
T Consensus 126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999 999999999999999999999999988644
No 469
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=98.15 E-value=1.5e-06 Score=71.16 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=32.4
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.+++++ +++.+|++++|+|+||+|||||+++|+..
T Consensus 146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~ 180 (434)
T PRK08472 146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKG 180 (434)
T ss_pred HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 478999 99999999999999999999999999854
No 470
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.14 E-value=1.9e-06 Score=70.70 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=33.0
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus 152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~ 187 (441)
T PRK09099 152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGT 187 (441)
T ss_pred eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999 999999999999999999999999998643
No 471
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.14 E-value=8.2e-06 Score=61.78 Aligned_cols=22 Identities=50% Similarity=0.647 Sum_probs=19.3
Q ss_pred CCEEEEECCCCCCcchHHHHHH
Q 044538 43 GTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 43 G~~~~liG~nGsGKSTLl~~i~ 64 (158)
|.+..|+||.|+|||||.--++
T Consensus 1 g~~~ll~g~~G~GKS~lal~la 22 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLA 22 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHH
Confidence 6788999999999999977665
No 472
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=98.14 E-value=1.5e-06 Score=71.07 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=33.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||+|||||++++++..
T Consensus 134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~ 169 (422)
T TIGR02546 134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGA 169 (422)
T ss_pred eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCC
Confidence 479999 999999999999999999999999998654
No 473
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.13 E-value=1.6e-06 Score=65.35 Aligned_cols=28 Identities=36% Similarity=0.453 Sum_probs=23.7
Q ss_pred eeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 40 IDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 40 i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
-.+..+++|.||||||||||.+.++...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998643
No 474
>PLN02796 D-glycerate 3-kinase
Probab=98.13 E-value=5.2e-07 Score=71.65 Aligned_cols=37 Identities=19% Similarity=0.159 Sum_probs=30.9
Q ss_pred cceeeeeEEe---eCCCE-----EEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGI---DMGTC-----VAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i---~~G~~-----~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++++.+ ++|+. +||.|+||||||||++.|....
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 3577888887 67776 9999999999999999998643
No 475
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.13 E-value=1.8e-06 Score=77.85 Aligned_cols=28 Identities=36% Similarity=0.637 Sum_probs=22.8
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
+++.|.+| +++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~ll~ai~ 44 (1179)
T TIGR02168 17 TTINFDKG-ITGIVGPNGCGKSNIVDAIR 44 (1179)
T ss_pred eeEEecCC-cEEEECCCCCChhHHHHHHH
Confidence 35555554 99999999999999998764
No 476
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.13 E-value=1.7e-06 Score=64.15 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 41 DMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 41 ~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.++.+++|.|+||||||||.+.|+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
No 477
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.12 E-value=5e-06 Score=73.52 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=27.3
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+=+|+++. ..+.++.|.|||.+||||++|.++.
T Consensus 597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l 629 (854)
T PRK05399 597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVAL 629 (854)
T ss_pred EecceeeC-CCCcEEEEECCCCCCcHHHHHHHHH
Confidence 44567776 6678999999999999999998864
No 478
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.11 E-value=1.4e-06 Score=65.40 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEECCCCCCcchHHHHHHhhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
++||.||||||||||.+.|....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999998643
No 479
>PRK15494 era GTPase Era; Provisional
Probab=98.10 E-value=2.4e-06 Score=68.07 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=41.6
Q ss_pred hhhheeeeEEcCCCCCcceeeeeEEeeCCC-------EEEEECCCCCCcchHHHHHHh
Q 044538 15 LQLIEVISFSYPNLQDIRLSNVDMGIDMGT-------CVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 15 l~~~~~~~~~~~~~~~~~l~~isl~i~~G~-------~~~liG~nGsGKSTLl~~i~~ 65 (158)
....++ +++|+. ...+++.+++++++|+ .++|+|..|+|||||++.+.+
T Consensus 19 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~ 74 (339)
T PRK15494 19 TEALAA-AVREDA-STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIG 74 (339)
T ss_pred cccccc-cccCCC-CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhC
Confidence 344555 788884 4568999999999999 999999999999999999875
No 480
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.08 E-value=2.7e-06 Score=69.82 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=32.1
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++++ |.+.+|++++|+|+||||||||+++|++..
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~ 188 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNA 188 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccc
Confidence 367777 999999999999999999999999998543
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.07 E-value=2.1e-06 Score=63.09 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEECCCCCCcchHHHHHHhhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
+++|.||||||||||.+.|....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998653
No 482
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.06 E-value=3.2e-06 Score=76.22 Aligned_cols=31 Identities=26% Similarity=0.509 Sum_probs=27.3
Q ss_pred eeeEE---eeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 35 NVDMG---IDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 35 ~isl~---i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.|+|+ +..+.+++|+|||||||||+++.|+.
T Consensus 19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~ 52 (1047)
T PRK10246 19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICL 52 (1047)
T ss_pred eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 58888 45689999999999999999999983
No 483
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.3e-05 Score=69.46 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=45.6
Q ss_pred HHHcCCCCCCCCCCCCCCChHHHHHHHHHHHHhh--------------CCCHHHHHHHHHH---HhhcCCeEEEEeecCC
Q 044538 94 LRKFGLPGHNHLTPIANLSGGQKVRVMFTLVSMY--------------HLDTQSIVAVAVT---LDEFAGGVVLVSHDSR 156 (158)
Q Consensus 94 l~~~~l~~~~~~~~~~~LSgGqkqrv~ia~~~l~--------------~lD~~~~~~l~~~---l~~~~~tvi~vtHd~~ 156 (158)
|-.+||+.....|...+|||||.||+-+|..+=+ +|.+.-...+++. |++.+-|+|+|.||.+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 4457887766667788999999999999866432 3444444555554 5566789999999965
No 484
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.05 E-value=2.7e-06 Score=66.35 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.-.++||.||||||||||+++|...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~l 85 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQAL 85 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988754
No 485
>PRK06820 type III secretion system ATPase; Validated
Probab=98.05 E-value=4.3e-06 Score=68.59 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=32.8
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRR 67 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~ 67 (158)
.+++.+ +++.+|+.++|+|+||+|||||+++|+...
T Consensus 152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~ 187 (440)
T PRK06820 152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADS 187 (440)
T ss_pred ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccC
Confidence 478999 999999999999999999999999998543
No 486
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.05 E-value=2.2e-06 Score=67.24 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=32.3
Q ss_pred cceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 31 IRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 31 ~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++++++...++.+++|+|++|||||||+..+..
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999998874
No 487
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.04 E-value=4.9e-06 Score=66.96 Aligned_cols=49 Identities=20% Similarity=0.087 Sum_probs=41.1
Q ss_pred CCCChHHHHHHHHHHHHhh---------------------CCCHHHHHHHHHHHhhcCCeEEEEeecCCC
Q 044538 109 ANLSGGQKVRVMFTLVSMY---------------------HLDTQSIVAVAVTLDEFAGGVVLVSHDSRL 157 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l~---------------------~lD~~~~~~l~~~l~~~~~tvi~vtHd~~~ 157 (158)
..+|.||++++++|.+++. +||+..+..+++.+.+.+..++++||+.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~ 343 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDH 343 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhh
Confidence 3799999999999866542 599999999999997766789999998753
No 488
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.04 E-value=3.9e-06 Score=58.21 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=24.4
Q ss_pred EeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 39 GIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 39 ~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
.+++|++++|.|+.|||||||.+.++.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999999974
No 489
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.04 E-value=4.8e-06 Score=70.60 Aligned_cols=48 Identities=27% Similarity=0.362 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhc--CCeEEEEeecCC
Q 044538 109 ANLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEF--AGGVVLVSHDSR 156 (158)
Q Consensus 109 ~~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~--~~tvi~vtHd~~ 156 (158)
..|||||+||++||++++. ++|+.....+.+.+++. +.+||+|||++.
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~ 504 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQ 504 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHH
Confidence 4789999999999977653 58899988888888765 478999999964
No 490
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.04 E-value=1.9e-06 Score=67.84 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=28.9
Q ss_pred eeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 36 VDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 36 isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+++.+..|+.++|+||+|||||||++.+++...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 567788999999999999999999999986543
No 491
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.04 E-value=1.8e-06 Score=62.68 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=28.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAV 65 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~ 65 (158)
+|+++++..+++++ +|+|++|||||||++.+..
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence 47788888877777 9999999999999999875
No 492
>PRK10869 recombination and repair protein; Provisional
Probab=98.04 E-value=5.7e-06 Score=69.97 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHHHHhh----------------CCCHHHHHHHHHHHhhcC--CeEEEEeecCC
Q 044538 110 NLSGGQKVRVMFTLVSMY----------------HLDTQSIVAVAVTLDEFA--GGVVLVSHDSR 156 (158)
Q Consensus 110 ~LSgGqkqrv~ia~~~l~----------------~lD~~~~~~l~~~l~~~~--~tvi~vtHd~~ 156 (158)
.+||||+||++||++++. ++|......+.+.+++.. .+||+|||++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~ 494 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQ 494 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 589999999999987663 588999998888887764 68999999974
No 493
>PRK09183 transposase/IS protein; Provisional
Probab=98.03 E-value=2.8e-06 Score=65.28 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=30.0
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
.|.+++| +++|+.+.|+||+|+|||+|...++..
T Consensus 92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3667888 999999999999999999999998643
No 494
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.02 E-value=6.3e-06 Score=68.86 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=34.7
Q ss_pred eEEcCCCCCcceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 22 SFSYPNLQDIRLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 22 ~~~~~~~~~~~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
...++.. ..++|+.+.+ +|.+++|.|||||||||+.+.++..
T Consensus 266 A~~~g~~--RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~ 307 (512)
T PRK13477 266 AVRCGST--RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKK 307 (512)
T ss_pred EEEeCCe--EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4445443 3689999988 8899999999999999999999843
No 495
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.02 E-value=3.4e-06 Score=56.83 Aligned_cols=22 Identities=45% Similarity=0.664 Sum_probs=19.8
Q ss_pred EEEEECCCCCCcchHHHHHHhh
Q 044538 45 CVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 45 ~~~liG~nGsGKSTLl~~i~~~ 66 (158)
+++|.|++||||||+.+.++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 496
>PRK02224 chromosome segregation protein; Provisional
Probab=98.00 E-value=4.4e-06 Score=74.03 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=25.3
Q ss_pred eeeeEEeeCCCEEEEECCCCCCcchHHHHHH
Q 044538 34 SNVDMGIDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 34 ~~isl~i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
.+.+++|.+| +++|+|||||||||++..|.
T Consensus 15 ~~~~~~f~~g-~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 15 ADADLRLEDG-VTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3456777775 99999999999999999876
No 497
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.00 E-value=5e-06 Score=59.46 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=25.3
Q ss_pred eeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhh
Q 044538 33 LSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVR 66 (158)
Q Consensus 33 l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~ 66 (158)
++.+-=.+ ++++++++|+||+|||||+|.|.+.
T Consensus 26 ~~~l~~~l-~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 26 IEELKELL-KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34444333 3599999999999999999999753
No 498
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=98.00 E-value=4.6e-06 Score=68.45 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=30.7
Q ss_pred ceeeeeEEeeCCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 32 RLSNVDMGIDMGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 32 ~l~~isl~i~~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
+++ .-|++.+|++++|+|+||+|||||++++++...
T Consensus 165 aID-~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~ 200 (455)
T PRK07960 165 AIN-ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ 200 (455)
T ss_pred eee-ecccccCCcEEEEECCCCCCccHHHHHHhCCCC
Confidence 444 449999999999999999999999999986543
No 499
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.00 E-value=4.4e-06 Score=74.41 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=25.3
Q ss_pred eeeEE-eeCCCEEEEECCCCCCcchHHHHHH
Q 044538 35 NVDMG-IDMGTCVAIVGPNDTGKSPLPNLLA 64 (158)
Q Consensus 35 ~isl~-i~~G~~~~liG~nGsGKSTLl~~i~ 64 (158)
+++|+ +....+++|+|||||||||++.+|+
T Consensus 16 ~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 16 DIDIEKLFDSGIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred ccceeecCCCCeEEEECCCCCcHHHHHHHHH
Confidence 66666 4455699999999999999999997
No 500
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.99 E-value=5.3e-06 Score=55.94 Aligned_cols=27 Identities=37% Similarity=0.552 Sum_probs=23.1
Q ss_pred CCCEEEEECCCCCCcchHHHHHHhhhh
Q 044538 42 MGTCVAIVGPNDTGKSPLPNLLAVRRR 68 (158)
Q Consensus 42 ~G~~~~liG~nGsGKSTLl~~i~~~~~ 68 (158)
++..+.|+||+|+||||+++.++....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence 367899999999999999999986543
Done!